Citrus Sinensis ID: 021527
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | 2.2.26 [Sep-21-2011] | |||||||
| Q42529 | 312 | Tryptophan synthase alpha | yes | no | 0.906 | 0.903 | 0.805 | 1e-127 | |
| O22765 | 275 | Tryptophan synthase alpha | no | no | 0.861 | 0.974 | 0.779 | 1e-124 | |
| P42390 | 347 | Indole-3-glycerol phospha | N/A | no | 0.829 | 0.743 | 0.583 | 2e-90 | |
| B7JUK2 | 267 | Tryptophan synthase alpha | yes | no | 0.836 | 0.973 | 0.570 | 1e-83 | |
| B0JXU3 | 264 | Tryptophan synthase alpha | yes | no | 0.836 | 0.984 | 0.559 | 2e-81 | |
| Q10W95 | 265 | Tryptophan synthase alpha | yes | no | 0.842 | 0.988 | 0.556 | 3e-81 | |
| B8HPH2 | 267 | Tryptophan synthase alpha | yes | no | 0.842 | 0.981 | 0.543 | 3e-81 | |
| Q8KX32 | 264 | Tryptophan synthase alpha | yes | no | 0.836 | 0.984 | 0.536 | 1e-80 | |
| B0C6F8 | 267 | Tryptophan synthase alpha | yes | no | 0.836 | 0.973 | 0.532 | 2e-80 | |
| P77960 | 264 | Tryptophan synthase alpha | N/A | no | 0.836 | 0.984 | 0.532 | 7e-80 |
| >sp|Q42529|TRPA2_ARATH Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana GN=TSA1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/283 (80%), Positives = 263/283 (92%), Gaps = 1/283 (0%)
Query: 29 STLSLKRFTPMAAL-TASPTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLD 87
S+LS KRFTPMA+L T+SPT+GLA+TFT+LKKQGKVA IPYITAGDPDLSTTAEALK+LD
Sbjct: 29 SSLSFKRFTPMASLSTSSPTLGLADTFTQLKKQGKVAFIPYITAGDPDLSTTAEALKVLD 88
Query: 88 SCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147
+CGSDIIELGVPYSDPLADGPVIQAAATRSL RGTN ++IL ML +VVPQ+SCPI+LFTY
Sbjct: 89 ACGSDIIELGVPYSDPLADGPVIQAAATRSLERGTNLDSILEMLDKVVPQISCPISLFTY 148
Query: 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDR 207
YNPILKRG+ FMS++R +G++GLVVPDVPLEETE L+KEA+ N IELVL TTPTTPT+R
Sbjct: 149 YNPILKRGLGKFMSSIRAVGVQGLVVPDVPLEETEMLRKEALNNDIELVLLTTPTTPTER 208
Query: 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQ 267
MK IV+ASEGF+YLVSSIGVTGAR+S+SG VQ+LL++IKE++ KPVAVGFGISKPEHV+Q
Sbjct: 209 MKLIVDASEGFIYLVSSIGVTGARSSVSGKVQSLLKDIKEATDKPVAVGFGISKPEHVKQ 268
Query: 268 VAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 310
+AGWGADGVIVGSAMVKLLG+A+SP EGLKELEK KSLKSAL
Sbjct: 269 IAGWGADGVIVGSAMVKLLGDAKSPTEGLKELEKLTKSLKSAL 311
|
The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Required for tryptophan biosynthesis. Contributes to the tryptophan-independent indole biosynthesis, and possibly to auxin production. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 1EC: .EC: 2EC: .EC: 8 |
| >sp|O22765|TRPA1_ARATH Tryptophan synthase alpha chain OS=Arabidopsis thaliana GN=TRPA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/268 (77%), Positives = 246/268 (91%)
Query: 43 TASPTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSD 102
T S TVGL+ETF RLK QGKVALIPYITAGDPDLSTTA+ALK+LDSCGSDIIELGVPYSD
Sbjct: 6 TPSSTVGLSETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPYSD 65
Query: 103 PLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMST 162
PLADGP IQAAA RSL +GTNFN+I+SMLKEV+PQ+SCPIALFTYYNPIL+RGV+N+M+
Sbjct: 66 PLADGPAIQAAARRSLLKGTNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYMTV 125
Query: 163 VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222
+++ G+ GL+VPDVPLEETE+L+ EA K++IELVL TTPTTP +RM AIVEASEGF+YLV
Sbjct: 126 IKNAGVHGLLVPDVPLEETETLRNEARKHQIELVLLTTPTTPKERMNAIVEASEGFIYLV 185
Query: 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282
SS+GVTG R S++ VQ+LL++IKE+++KPVAVGFGISKPEHV+QVA WGADGVIVGSAM
Sbjct: 186 SSVGVTGTRESVNEKVQSLLQQIKEATSKPVAVGFGISKPEHVKQVAEWGADGVIVGSAM 245
Query: 283 VKLLGEAQSPEEGLKELEKFAKSLKSAL 310
VK+LGE++SPE+GLKELE F KSLKSAL
Sbjct: 246 VKILGESESPEQGLKELEFFTKSLKSAL 273
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The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate (By similarity). Contributes to the tryptophan-independent indole biosynthesis, and possibly to auxin production. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 8 |
| >sp|P42390|TRPA_MAIZE Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays GN=BX1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 332 bits (851), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 153/262 (58%), Positives = 204/262 (77%), Gaps = 4/262 (1%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+++T L +GK A IPYITAGDPDL+TTAEAL+LLD CG+D+IELGVP SDP DGP+
Sbjct: 90 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPI 149
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQA+ R+LA GT +A+L ML+EV P++SCP+ L +YY PI+ R ++ +++ G+
Sbjct: 150 IQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRS----LAEMKEAGVH 205
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GL+VPD+P SL EA N +ELVL TTP P DRMK I +ASEGFVYLVS GVTG
Sbjct: 206 GLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTG 265
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
RA+++ V++L++E+K+ + KPVAVGFGISKPEHV+Q+A WGADGVI+GSAMV+ LGEA
Sbjct: 266 PRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEA 325
Query: 290 QSPEEGLKELEKFAKSLKSALP 311
SP++GL+ LE++A+ +K+ALP
Sbjct: 326 ASPKQGLRRLEEYARGMKNALP 347
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The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria, tryptophan synthase alpha (TSA) activity is almost completely dependent on formation of an active alpha2beta2 complex with tryptophan synthase beta (TSB), and indole is usually not released during tryptophan synthesis. In maize, the TSA homolog BX1 catalyzes the formation of free indole from indole-3-glycerol phosphate, independently of TSB. Zea mays (taxid: 4577) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|B7JUK2|TRPA_CYAP8 Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) GN=trpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (792), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/261 (57%), Positives = 193/261 (73%), Gaps = 1/261 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+++ F L+ + + ALIP+ITAGDPDL TTA+AL+LLD+ G+D+IELGVPYSDPLADGPV
Sbjct: 4 VSDCFQSLRDRRQCALIPFITAGDPDLETTAKALRLLDASGADLIELGVPYSDPLADGPV 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQAAATR+L RG +L ++KEV P++ PI LFTYYNPI RGV+ F+ V+ G++
Sbjct: 64 IQAAATRALGRGVKLEDVLGVVKEVSPEIKAPIILFTYYNPIFYRGVEAFLQQVKAAGVQ 123
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GLVVPD+PLEE ESL K A + I + L PT+P +R++AI S+GF+YLVS GVTG
Sbjct: 124 GLVVPDLPLEEAESLLKPAHEVGIAVTLLVAPTSPIERIEAIARQSQGFIYLVSVTGVTG 183
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
R+ ++ V+ LL ++ ++ KP+ VGFGISKPEH QV WGAD VIVGSAMVK L E
Sbjct: 184 MRSQVTSRVKELLTSLRSATDKPIGVGFGISKPEHALQVKNWGADAVIVGSAMVKRLAEG 243
Query: 290 QSPEEGLKELEKFAKSLKSAL 310
+PEEGLK + F + LK AL
Sbjct: 244 -TPEEGLKAIGAFCQDLKQAL 263
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The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Cyanothece sp. (strain PCC 8801) (taxid: 41431) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|B0JXU3|TRPA_MICAN Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) GN=trpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 302 bits (774), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/261 (55%), Positives = 187/261 (71%), Gaps = 1/261 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+ E F L+ QG ALIP+ITAGDPDLSTTA+AL++LD G+D+IELGVPYSDPLADGPV
Sbjct: 4 VTECFRSLRSQGNCALIPFITAGDPDLSTTAQALRILDRAGADLIELGVPYSDPLADGPV 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQ+AATR+L RG +L ++K ++ PI LFTYYNPI RG+D F+ ++ G+
Sbjct: 64 IQSAATRALNRGVKLEDVLEIVKNAQGEVKAPIILFTYYNPIYHRGIDVFLDQIKAAGVS 123
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GLVVPD+PLEE ESL + A IE++L PT+P +R++AI S+GF+YLVS GVTG
Sbjct: 124 GLVVPDLPLEEAESLLQPAAAKGIEVILLVAPTSPPERIQAIALQSQGFIYLVSVTGVTG 183
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
R ++ V+ LL I+ + KPV VGFGIS+P QV WGAD VIVGSAMVK L +
Sbjct: 184 MRKQVATRVEELLDSIRSVTDKPVGVGFGISEPTQALQVKNWGADAVIVGSAMVKRLAD- 242
Query: 290 QSPEEGLKELEKFAKSLKSAL 310
SP +GLK LE+F +SLK A+
Sbjct: 243 NSPSDGLKSLEEFCRSLKQAI 263
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The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|Q10W95|TRPA_TRIEI Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 302 bits (773), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/264 (55%), Positives = 196/264 (74%), Gaps = 2/264 (0%)
Query: 48 VGLAETFTRLKKQG-KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLAD 106
+ +++ F L+ + ALIP+ITAGDPDL TTA+AL++LD G+++IELGVPYSDPLAD
Sbjct: 2 ISVSDCFESLRNNSSQCALIPFITAGDPDLETTAKALEVLDRSGANMIELGVPYSDPLAD 61
Query: 107 GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDI 166
GPVIQAAATRSL RGT ++L +++ V P++ PI LFTYYNPIL RGV+NF+ + D+
Sbjct: 62 GPVIQAAATRSLNRGTTLESVLEVVQTVSPKLRSPIILFTYYNPILYRGVENFLKKIYDV 121
Query: 167 GIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226
G RGLVVPD+PLEE + L + A IEL L PT+P +R+KAI S+GF+YLVS G
Sbjct: 122 GARGLVVPDLPLEEADILLEPAKDIGIELTLLVAPTSPKERIKAIAHQSQGFIYLVSVTG 181
Query: 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286
VTG RA + V+ LL +++E + KP+ VGFGIS+PE QV WG+D VIVGSA+VK L
Sbjct: 182 VTGMRAQMQTRVEDLLAQMREVTDKPIGVGFGISQPEQALQVKKWGSDAVIVGSAVVKRL 241
Query: 287 GEAQSPEEGLKELEKFAKSLKSAL 310
E SP+EGLK + +F ++LK+A+
Sbjct: 242 AEG-SPDEGLKAIGEFCQNLKAAI 264
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The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Trichodesmium erythraeum (strain IMS101) (taxid: 203124) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|B8HPH2|TRPA_CYAP4 Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=trpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/263 (54%), Positives = 189/263 (71%), Gaps = 1/263 (0%)
Query: 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADG 107
V ++ F+ L+ + + ALIP+ITAGDP L TA+AL++LD G+D+IELGVPYSDPLADG
Sbjct: 2 VSVSTCFSALRDRAQCALIPFITAGDPSLEITAKALQVLDQQGADLIELGVPYSDPLADG 61
Query: 108 PVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIG 167
P IQAAATR+L +GT +A+L M+ V P + P+ LFTYYNPI RGV+ F+ V G
Sbjct: 62 PTIQAAATRALQKGTRLDAVLEMISHVAPNLRSPLILFTYYNPIFHRGVEPFLQQVAQAG 121
Query: 168 IRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227
++GLVVPD+PLEE +++ +A IEL L PTTP R+ AI E S+GF+YLVS+ GV
Sbjct: 122 VQGLVVPDLPLEEADTVLTQAAAVGIELTLLVAPTTPRSRIAAIAERSQGFIYLVSTTGV 181
Query: 228 TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287
TG R+ + G V LL E+++ + KP+ VGFGIS+PEH +QV WGAD IVGSA VK L
Sbjct: 182 TGMRSKVEGRVHELLLELQQVTDKPIGVGFGISQPEHARQVMEWGADAAIVGSAFVKRLA 241
Query: 288 EAQSPEEGLKELEKFAKSLKSAL 310
E +PE+GL + F +SLK+AL
Sbjct: 242 EG-TPEQGLAAIADFCRSLKTAL 263
|
The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|Q8KX32|TRPA_SYNP2 Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 140/261 (53%), Positives = 196/261 (75%), Gaps = 1/261 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
++E F LK+ G+ ALIP+ITAGDPDL TT +ALK+LD+ G+D IELGVPYSDPLADGP
Sbjct: 4 VSERFRSLKQAGQCALIPFITAGDPDLETTEQALKILDAAGADFIELGVPYSDPLADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQAAATR+L+RG +L++++ V Q++ PI LFTYYNPI RG+D FM+ V G++
Sbjct: 64 IQAAATRALSRGVTLEQVLAIVQRVHGQLTAPIILFTYYNPIFYRGIDAFMAQVAAAGVK 123
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GLV+PD+PLEE++ + A + ++L+L PT+PT+R++AI +AS+GF+YLVS GVTG
Sbjct: 124 GLVIPDLPLEESQMVLDAATSHGLDLILLVAPTSPTERIEAIAKASQGFIYLVSVTGVTG 183
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
AR S++ V LL ++++ + KP+ VGFG+S P +Q+ WGADGVIVGSA+VK L
Sbjct: 184 ARTSVASRVGELLPKLRQVTDKPIGVGFGVSDPAQARQLKEWGADGVIVGSAVVKRLATG 243
Query: 290 QSPEEGLKELEKFAKSLKSAL 310
+P EGL +++F +SLK A+
Sbjct: 244 -TPAEGLAAVKEFCESLKEAI 263
|
The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|B0C6F8|TRPA_ACAM1 Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) GN=trpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (764), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 190/261 (72%), Gaps = 1/261 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+++ F +L+ +G+ ALIP++TAGDPDL+TTA AL+ LD+ G+D+IELGVPYSDPLADGPV
Sbjct: 4 VSDCFAQLRDRGQCALIPFLTAGDPDLATTASALRQLDASGADLIELGVPYSDPLADGPV 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQAAATR+L RGT + +L M+ E+ P++ PI LFTYYNPI RGV F+ + G+R
Sbjct: 64 IQAAATRALQRGTRLDQVLEMVTELSPEIRAPIILFTYYNPIYHRGVAEFLQQIAKAGVR 123
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GLVVPD+PLEE+E+L ++A IE+ L PT+ +R++ I S+GF+YLVS+ GVTG
Sbjct: 124 GLVVPDLPLEESENLLQQAADLGIEVTLLVAPTSSKERIEKIALRSQGFIYLVSTTGVTG 183
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
R + VQ L+ ++++ + KP+ VGFGIS+ EH +QV WGAD IVGSA V L E
Sbjct: 184 MRTKVENRVQDLIADLRQVTDKPIGVGFGISRTEHARQVMDWGADAAIVGSAFVNRLSEG 243
Query: 290 QSPEEGLKELEKFAKSLKSAL 310
SP +GL + F +SLKS+L
Sbjct: 244 -SPSQGLSAISTFCRSLKSSL 263
|
The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Acaryochloris marina (strain MBIC 11017) (taxid: 329726) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|P77960|TRPA_SYNY3 Tryptophan synthase alpha chain OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 193/261 (73%), Gaps = 1/261 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+A F L+++G+ ALIP++TAGDPDL+TTAEAL++LD G+D+IELGVPYSDPLADGPV
Sbjct: 4 VAACFNALRQRGECALIPFLTAGDPDLATTAEALRILDRAGADLIELGVPYSDPLADGPV 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQAAATR+L +G + +L++++EV ++ PI LFTYYNPI +GV+ F+ ++ G++
Sbjct: 64 IQAAATRALQKGVKLDDVLAIVREVHQDIAAPIILFTYYNPIFYQGVEVFLDKIKAAGVK 123
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GLVVPD+PLEE++ L + + +EL+L PT+ +R AI + S+GFVYLVS GVTG
Sbjct: 124 GLVVPDLPLEESDRLLEATAERGLELILLVAPTSSPERQTAIAKKSQGFVYLVSVTGVTG 183
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
R + V+ LL +++ + KP+ VGFGIS+PE +QV WGAD VIVGSAMVK L E
Sbjct: 184 VRTEVGSRVEALLAGMRQVTDKPIGVGFGISQPEQAEQVKAWGADAVIVGSAMVKRLAEG 243
Query: 290 QSPEEGLKELEKFAKSLKSAL 310
+P EGL+ LE F + LK+A+
Sbjct: 244 -TPTEGLQALETFCRELKTAI 263
|
The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | ||||||
| 388491266 | 311 | unknown [Lotus japonicus] | 1.0 | 1.0 | 0.762 | 1e-136 | |
| 356572236 | 311 | PREDICTED: indole-3-glycerol phosphate l | 1.0 | 1.0 | 0.749 | 1e-134 | |
| 255559913 | 313 | trytophan synthase alpha subunit, putati | 0.990 | 0.984 | 0.789 | 1e-133 | |
| 449455268 | 312 | PREDICTED: indole-3-glycerol phosphate l | 0.990 | 0.987 | 0.766 | 1e-133 | |
| 224062268 | 310 | predicted protein [Populus trichocarpa] | 0.987 | 0.990 | 0.794 | 1e-132 | |
| 449446897 | 312 | PREDICTED: indole-3-glycerol phosphate l | 0.932 | 0.929 | 0.786 | 1e-129 | |
| 225437203 | 316 | PREDICTED: indole-3-glycerol phosphate l | 0.977 | 0.962 | 0.75 | 1e-129 | |
| 224085571 | 310 | predicted protein [Populus trichocarpa] | 0.987 | 0.990 | 0.779 | 1e-129 | |
| 356504969 | 311 | PREDICTED: indole-3-glycerol phosphate l | 1.0 | 1.0 | 0.745 | 1e-127 | |
| 209968797 | 313 | indole-3-glycerol phosphate lyase IGL1 [ | 0.967 | 0.961 | 0.731 | 1e-127 |
| >gi|388491266|gb|AFK33699.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/311 (76%), Positives = 270/311 (86%)
Query: 1 MAALQATTNFVHLKNPHAHYLPRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQ 60
MA ++ F +K P A + K+ + +KR TP+AA+ TVGL+ETF+RLKKQ
Sbjct: 1 MAIALKSSCFFQVKKPEAGFPVYFSSKKAIIWVKRNTPVAAIRTMETVGLSETFSRLKKQ 60
Query: 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR 120
GKVA IPYITAGDPDLSTTAEALK+LDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR
Sbjct: 61 GKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR 120
Query: 121 GTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 180
GTNFNAI+SMLKEV PQ+SCP+ALF+YYNPILKRG D FMST+RD G+ GLVVPDVPLEE
Sbjct: 121 GTNFNAIISMLKEVTPQLSCPVALFSYYNPILKRGTDKFMSTIRDSGVHGLVVPDVPLEE 180
Query: 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT 240
TE L+ EA KN IELVL TTPTTP DRMKAIV+A+EGFVYLVSS+GVTGARAS+S VQ
Sbjct: 181 TEILRTEAKKNGIELVLLTTPTTPIDRMKAIVDAAEGFVYLVSSVGVTGARASVSDKVQA 240
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELE 300
LL+EIKE+++KPVAVGFGISKPEHV+QVAGWGADGVIVGSAMVK+LG+A+SP+EGLKELE
Sbjct: 241 LLQEIKEATSKPVAVGFGISKPEHVEQVAGWGADGVIVGSAMVKILGDAKSPQEGLKELE 300
Query: 301 KFAKSLKSALP 311
F +SLKSALP
Sbjct: 301 NFTRSLKSALP 311
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572236|ref|XP_003554276.1| PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/311 (74%), Positives = 270/311 (86%)
Query: 1 MAALQATTNFVHLKNPHAHYLPRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQ 60
MA ++ + LK P A + K+ +S+KR+TP+AA+ VGL+ TFTRLKK+
Sbjct: 1 MALALKSSCLLQLKKPEAGFNVCFSSKKAIISVKRYTPVAAIRIMDAVGLSATFTRLKKE 60
Query: 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR 120
GKVA IPYITAGDPDLSTTAEALKLLDSCGSDIIELG+PYSDPLADGPVIQAAATRSLA+
Sbjct: 61 GKVAFIPYITAGDPDLSTTAEALKLLDSCGSDIIELGIPYSDPLADGPVIQAAATRSLAK 120
Query: 121 GTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 180
GTNFN I+ MLKEVVPQ+SCPIALFTYYNPILKRG + FMST+RD G+ GLVVPDVPLEE
Sbjct: 121 GTNFNVIIDMLKEVVPQLSCPIALFTYYNPILKRGTEKFMSTIRDTGVHGLVVPDVPLEE 180
Query: 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT 240
TE+L+ EA K+ IELVL TTPTTP DRMKAIV+ +EGFVYLVSS+GVTGARAS+SG VQ+
Sbjct: 181 TETLRTEAKKHGIELVLLTTPTTPPDRMKAIVDVAEGFVYLVSSVGVTGARASVSGSVQS 240
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELE 300
LL+EIKE++TKPVAVGFGISKPEHV+QVAGWGADGVIVGSA+VK+LGEA+SP+EGLKELE
Sbjct: 241 LLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAIVKVLGEAKSPQEGLKELE 300
Query: 301 KFAKSLKSALP 311
+SLK+ALP
Sbjct: 301 VLTRSLKAALP 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559913|ref|XP_002520975.1| trytophan synthase alpha subunit, putative [Ricinus communis] gi|223539812|gb|EEF41392.1| trytophan synthase alpha subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/309 (78%), Positives = 275/309 (88%), Gaps = 1/309 (0%)
Query: 3 ALQATTNFVHLKNPHAHYLPRLPCHKST-LSLKRFTPMAALTASPTVGLAETFTRLKKQG 61
AL++TT+F+H + P H L R P +K T +S +RF PMA LTA+ + L+ETF+ LKK+G
Sbjct: 4 ALKSTTSFLHDRKPETHLLIRSPSYKPTVISTRRFAPMATLTAAKNLSLSETFSNLKKRG 63
Query: 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG 121
KVA IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG
Sbjct: 64 KVAFIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG 123
Query: 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 181
TNF+AI SMLKEVVPQ+SCPIALFTYYNPILKRG++ FMSTV+DIG+ GLVVPDVPLEET
Sbjct: 124 TNFDAITSMLKEVVPQLSCPIALFTYYNPILKRGIEKFMSTVKDIGVHGLVVPDVPLEET 183
Query: 182 ESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTL 241
E L+ EA K IELVL TTPTTPT+RMKAIVEA+EGFVYLVSS+GVTGARAS+S VQTL
Sbjct: 184 ELLRNEAAKKNIELVLLTTPTTPTERMKAIVEAAEGFVYLVSSVGVTGARASVSDRVQTL 243
Query: 242 LREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
L+EIKE++ KPVAVGFGISKPEHV+QVAGWGADGVIVGSAMVK+LGEA+SPEEGL+EL
Sbjct: 244 LQEIKEATAKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPEEGLEELAT 303
Query: 302 FAKSLKSAL 310
KSLKSAL
Sbjct: 304 LTKSLKSAL 312
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455268|ref|XP_004145375.1| PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic-like [Cucumis sativus] gi|449522017|ref|XP_004168025.1| PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/308 (76%), Positives = 264/308 (85%)
Query: 4 LQATTNFVHLKNPHAHYLPRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGKV 63
L ++ F K P P PC S KR PMA+LTAS VGL+ETF++LK+QGKV
Sbjct: 5 LNSSRLFQFNKIPTTLIFPPHPCKISVFQSKRVVPMASLTASSAVGLSETFSKLKEQGKV 64
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
A IPYITAGDPDLSTTAEALK+L + GSDIIELGVPYSDPLADGPVIQAAATRSLARGTN
Sbjct: 65 AFIPYITAGDPDLSTTAEALKVLSTSGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 124
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
F+AI+SMLKEV+P++SCPIALF+YYNPILKRG+ NFM T++D G+RGLVVPDVPLEETE
Sbjct: 125 FSAIISMLKEVIPELSCPIALFSYYNPILKRGIGNFMLTIKDAGVRGLVVPDVPLEETEI 184
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
L+KEA+K+ IELVL TTPTTP DRMKAIVEASEGFVYLVSS+GVTGARAS+S VQTLL
Sbjct: 185 LRKEAVKHSIELVLLTTPTTPRDRMKAIVEASEGFVYLVSSVGVTGARASVSNKVQTLLE 244
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303
EIKE + KPVAVGFGISKPEHV+QV+ WGADG+IVGSAMVKLLGEAQSPEEGLK LE F
Sbjct: 245 EIKEVTEKPVAVGFGISKPEHVKQVSSWGADGIIVGSAMVKLLGEAQSPEEGLKALENFT 304
Query: 304 KSLKSALP 311
KSL SALP
Sbjct: 305 KSLTSALP 312
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224062268|ref|XP_002300807.1| predicted protein [Populus trichocarpa] gi|222842533|gb|EEE80080.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/311 (79%), Positives = 280/311 (90%), Gaps = 4/311 (1%)
Query: 2 AALQATTNFVHLKNPHAHYLPRLPCHKSTL-SLKRFTPMAALTASPTVGLAETFTRLKKQ 60
AAL++T +F+ LK P H+L R HK T+ S +RF PMA+LTA ++G+ ETF+ LKKQ
Sbjct: 3 AALKSTPSFLQLKKPETHFLVR---HKPTIVSTRRFAPMASLTAIRSLGIGETFSNLKKQ 59
Query: 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR 120
GKVALIPYITAGDPDL TTAEALK+LD+CG DIIELGVPYSDPLADGPVIQAAATRSLAR
Sbjct: 60 GKVALIPYITAGDPDLKTTAEALKVLDACGCDIIELGVPYSDPLADGPVIQAAATRSLAR 119
Query: 121 GTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 180
GTNF AI SML+EVVPQ+SCPIALFTYYNPILKRG++ FMSTV+DIG+ GLVVPDVPLEE
Sbjct: 120 GTNFEAITSMLREVVPQVSCPIALFTYYNPILKRGIEKFMSTVKDIGVHGLVVPDVPLEE 179
Query: 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT 240
T L+KEA+KNK+ELVL TTPTTPT+RMKAIVEA++GFVYLVSS+GVTGARAS+S VQT
Sbjct: 180 TGVLRKEAVKNKLELVLLTTPTTPTERMKAIVEAADGFVYLVSSVGVTGARASVSDRVQT 239
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELE 300
LLR+IKES+TKPVAVGFGISKPEHV+QVA WGADGVIVGSAMVKLLGEA+SPEEGLKELE
Sbjct: 240 LLRDIKESTTKPVAVGFGISKPEHVKQVAAWGADGVIVGSAMVKLLGEAKSPEEGLKELE 299
Query: 301 KFAKSLKSALP 311
F KSLK+ALP
Sbjct: 300 SFTKSLKAALP 310
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446897|ref|XP_004141207.1| PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic-like [Cucumis sativus] gi|449515605|ref|XP_004164839.1| PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/291 (78%), Positives = 254/291 (87%), Gaps = 1/291 (0%)
Query: 20 YLPRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGKVALIPYITAGDPDLSTT 79
+ PR PC S KRF PMAAL A P VGL+ETF L++QGKVALIPYITAGDPDLSTT
Sbjct: 22 FSPR-PCKISVSQSKRFAPMAALAAYPVVGLSETFKNLREQGKVALIPYITAGDPDLSTT 80
Query: 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139
AEALK+L CGSDIIELGVPYSDPLADGPVIQAAATRSLAR TNFNAI+SMLK V+P++S
Sbjct: 81 AEALKVLSKCGSDIIELGVPYSDPLADGPVIQAAATRSLARETNFNAIISMLKGVIPELS 140
Query: 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 199
PI+LFTYYNPILKRGV+NFM ++D G+RGLVVPDVPLEETE L+KEA+K+ IELVL T
Sbjct: 141 RPISLFTYYNPILKRGVENFMMIIKDTGVRGLVVPDVPLEETEVLRKEAVKHNIELVLLT 200
Query: 200 TPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGI 259
TPTTP +RMK IVEASEGFVYLVSSIGVTG R S+S VQTLL E+KE + KPVAVGFGI
Sbjct: 201 TPTTPKERMKNIVEASEGFVYLVSSIGVTGTRTSVSSRVQTLLEEVKEVTEKPVAVGFGI 260
Query: 260 SKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 310
SKPEHV+QVA WGADG+I+GSAMVKLLGEAQSPEEGLKELE F +SLKSAL
Sbjct: 261 SKPEHVKQVAEWGADGIIIGSAMVKLLGEAQSPEEGLKELENFTRSLKSAL 311
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437203|ref|XP_002281599.1| PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/308 (75%), Positives = 267/308 (86%), Gaps = 4/308 (1%)
Query: 7 TTNFVHLKNPHAHYLPR----LPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGK 62
+ +FV L AH L P + ++S K F PMAA+ A P VGL+ETF +L+KQG+
Sbjct: 8 SVSFVGLNKSEAHLLFGSGFGFPSTRLSVSFKAFKPMAAVAAVPAVGLSETFDKLRKQGQ 67
Query: 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT 122
VALIPYITAGDPDLSTTAEALK+LDSCGSDIIELG+PYSDPLADGPVIQAAATRSLARGT
Sbjct: 68 VALIPYITAGDPDLSTTAEALKVLDSCGSDIIELGLPYSDPLADGPVIQAAATRSLARGT 127
Query: 123 NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE 182
N NA++SMLKEVVPQ+SCP+ALF+YYNPILKRG+ FM+ ++D+G+ GLVVPDVPLEETE
Sbjct: 128 NLNAVISMLKEVVPQLSCPVALFSYYNPILKRGIGKFMTIIKDVGVHGLVVPDVPLEETE 187
Query: 183 SLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLL 242
L+ E++KN IELVL TTPTTP DRMKAIV ASEGFVYLVSS+GVTGARAS+S VQTLL
Sbjct: 188 ILRMESIKNNIELVLLTTPTTPIDRMKAIVAASEGFVYLVSSVGVTGARASVSSRVQTLL 247
Query: 243 REIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKF 302
+EIK++++KPVAVGFGISKPEHV+QV WGADGVIVGSAMVK+LGEA+SPEEGLKELE F
Sbjct: 248 QEIKQATSKPVAVGFGISKPEHVKQVVAWGADGVIVGSAMVKVLGEAKSPEEGLKELETF 307
Query: 303 AKSLKSAL 310
KSLKSAL
Sbjct: 308 TKSLKSAL 315
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085571|ref|XP_002307623.1| predicted protein [Populus trichocarpa] gi|222857072|gb|EEE94619.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/309 (77%), Positives = 277/309 (89%), Gaps = 2/309 (0%)
Query: 3 ALQATTNFVHLKNPHAHYLPRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGK 62
AL++T +F+ LK P +++ R +S +RF PMA+LTA+ ++G+ ETF+ LKKQGK
Sbjct: 4 ALKSTPSFLQLKKPETYFIVR--NKPPIVSTRRFAPMASLTATRSLGIGETFSNLKKQGK 61
Query: 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT 122
VALIPYITAGDPDLSTTAEALKLLD+CG DIIELGVPYSDPLADGPVIQAAATRSLARGT
Sbjct: 62 VALIPYITAGDPDLSTTAEALKLLDACGCDIIELGVPYSDPLADGPVIQAAATRSLARGT 121
Query: 123 NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE 182
NF AI SMLKEVVPQ+SCPIALFTYYNPILKRG++ FMSTV DIG+ GLVVPDVPLEET+
Sbjct: 122 NFEAITSMLKEVVPQVSCPIALFTYYNPILKRGIEKFMSTVNDIGVHGLVVPDVPLEETQ 181
Query: 183 SLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLL 242
L+KEA+KN +ELVL TTPTTPT+RMKAIVEA++GFVYLVSS+GVTG RAS+S VQTLL
Sbjct: 182 VLRKEAVKNGLELVLLTTPTTPTERMKAIVEAADGFVYLVSSVGVTGTRASVSDRVQTLL 241
Query: 243 REIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKF 302
++IKE++TKPVAVGFGISKPEHV+QVAGWGADGVIVGSAMVKLLGEA+SPEEGLKELE F
Sbjct: 242 QDIKETTTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKLLGEAKSPEEGLKELESF 301
Query: 303 AKSLKSALP 311
KSLK+ALP
Sbjct: 302 TKSLKAALP 310
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504969|ref|XP_003521265.1| PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/311 (74%), Positives = 270/311 (86%)
Query: 1 MAALQATTNFVHLKNPHAHYLPRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQ 60
MA ++ F+ LK P A + K+ +S+KR TP+AA+ VGL+ TFTRLKK+
Sbjct: 1 MALALKSSCFLQLKKPEAGFNVCFSSKKAIISVKRHTPVAAIRTMEAVGLSATFTRLKKE 60
Query: 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR 120
GKVA IPY+TAGDPDLSTTAEALK+LDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA+
Sbjct: 61 GKVAFIPYVTAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAK 120
Query: 121 GTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 180
GTN NAI+ MLKEVVPQ+SCPIALFTYYNPILKRG D FMST+RD G+ GLVVPDVPLEE
Sbjct: 121 GTNLNAIIDMLKEVVPQLSCPIALFTYYNPILKRGTDKFMSTIRDSGVHGLVVPDVPLEE 180
Query: 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT 240
TE+L+ EA K+ IELVL TTPTTPT+RM+AIV+ +EGFVYLVSS+GVTGARAS+SG VQ+
Sbjct: 181 TETLRTEAKKHGIELVLLTTPTTPTNRMRAIVDVAEGFVYLVSSVGVTGARASVSGSVQS 240
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELE 300
LL+EIKE++TKPVAVGFGISKPEHV+QV WGADGVIVGSA+VK+LGEA+SP+EGLKELE
Sbjct: 241 LLKEIKEATTKPVAVGFGISKPEHVKQVVVWGADGVIVGSAIVKVLGEAKSPQEGLKELE 300
Query: 301 KFAKSLKSALP 311
F +SLK+ALP
Sbjct: 301 VFTRSLKAALP 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|209968797|gb|ACJ02772.1| indole-3-glycerol phosphate lyase IGL1 [Lamium galeobdolon] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/309 (73%), Positives = 263/309 (85%), Gaps = 8/309 (2%)
Query: 8 TNFVHLKNPHAHYLPRLPCHKSTL------SLKRFTPMAALTASPTVGLAETFTRLKKQG 61
T F+ L+ ++ LP P + S+L S K MA LTA+PTVGL++TF+RLK+QG
Sbjct: 6 TGFLQLRTNYS--LPEYPLYPSSLTSSTNRSFKLRPIMATLTAAPTVGLSKTFSRLKQQG 63
Query: 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG 121
KVA IPYITAGDPDLSTTAE LK+LDSCGSDIIELGVPYSDPLADGPVIQAAA+R+LARG
Sbjct: 64 KVAFIPYITAGDPDLSTTAEVLKVLDSCGSDIIELGVPYSDPLADGPVIQAAASRALARG 123
Query: 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 181
TNF+ I++MLKEVVPQ+SCP+ALFTYYNPILKRG FM+T++D GI GLVVPDVPLEET
Sbjct: 124 TNFDKIIAMLKEVVPQLSCPVALFTYYNPILKRGAGKFMATLQDTGIHGLVVPDVPLEET 183
Query: 182 ESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTL 241
E L+KEA+ IELVL TTPTTP RM++IVE SEGFVYLVSS+GVTGARAS+S VQ L
Sbjct: 184 EILRKEAISKNIELVLLTTPTTPKARMQSIVEVSEGFVYLVSSVGVTGARASVSDRVQNL 243
Query: 242 LREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
L+EIKE++ KPVAVGFGISKPEHV+QVA WGADGVIVGSAMVK+L EA+SPEEG+KE+E
Sbjct: 244 LKEIKEATDKPVAVGFGISKPEHVKQVADWGADGVIVGSAMVKILAEAKSPEEGIKEIET 303
Query: 302 FAKSLKSAL 310
+ KSLKSAL
Sbjct: 304 YTKSLKSAL 312
|
Source: Lamium galeobdolon Species: Lamium galeobdolon Genus: Lamium Family: Lamiaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | ||||||
| TAIR|locus:3685290 | 312 | TSA1 "tryptophan synthase alph | 0.906 | 0.903 | 0.805 | 2.3e-119 | |
| TAIR|locus:2132328 | 275 | AT4G02610 [Arabidopsis thalian | 0.861 | 0.974 | 0.779 | 6.8e-111 | |
| TIGR_CMR|GSU_2371 | 264 | GSU_2371 "tryptophan synthase, | 0.832 | 0.981 | 0.425 | 2.7e-52 | |
| TIGR_CMR|CHY_1581 | 267 | CHY_1581 "tryptophan synthase, | 0.829 | 0.966 | 0.4 | 2e-49 | |
| CGD|CAL0004378 | 702 | TRP5 [Candida albicans (taxid: | 0.787 | 0.349 | 0.405 | 5.9e-45 | |
| UNIPROTKB|Q59KP3 | 702 | TRP5 "Likely tryptophan synthe | 0.787 | 0.349 | 0.405 | 5.9e-45 | |
| TIGR_CMR|BA_1254 | 258 | BA_1254 "tryptophan synthase, | 0.752 | 0.906 | 0.398 | 9.1e-45 | |
| TIGR_CMR|SPO_0815 | 263 | SPO_0815 "tryptophan synthase, | 0.797 | 0.942 | 0.409 | 8.1e-44 | |
| TIGR_CMR|DET_1488 | 255 | DET_1488 "tryptophan synthase, | 0.790 | 0.964 | 0.362 | 3.5e-43 | |
| ASPGD|ASPL0000007723 | 723 | trpB [Emericella nidulans (tax | 0.819 | 0.352 | 0.355 | 1.1e-42 |
| TAIR|locus:3685290 TSA1 "tryptophan synthase alpha chain" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1175 (418.7 bits), Expect = 2.3e-119, P = 2.3e-119
Identities = 228/283 (80%), Positives = 263/283 (92%)
Query: 29 STLSLKRFTPMAAL-TASPTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLD 87
S+LS KRFTPMA+L T+SPT+GLA+TFT+LKKQGKVA IPYITAGDPDLSTTAEALK+LD
Sbjct: 29 SSLSFKRFTPMASLSTSSPTLGLADTFTQLKKQGKVAFIPYITAGDPDLSTTAEALKVLD 88
Query: 88 SCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147
+CGSDIIELGVPYSDPLADGPVIQAAATRSL RGTN ++IL ML +VVPQ+SCPI+LFTY
Sbjct: 89 ACGSDIIELGVPYSDPLADGPVIQAAATRSLERGTNLDSILEMLDKVVPQISCPISLFTY 148
Query: 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDR 207
YNPILKRG+ FMS++R +G++GLVVPDVPLEETE L+KEA+ N IELVL TTPTTPT+R
Sbjct: 149 YNPILKRGLGKFMSSIRAVGVQGLVVPDVPLEETEMLRKEALNNDIELVLLTTPTTPTER 208
Query: 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQ 267
MK IV+ASEGF+YLVSSIGVTGAR+S+SG VQ+LL++IKE++ KPVAVGFGISKPEHV+Q
Sbjct: 209 MKLIVDASEGFIYLVSSIGVTGARSSVSGKVQSLLKDIKEATDKPVAVGFGISKPEHVKQ 268
Query: 268 VAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 310
+AGWGADGVIVGSAMVKLLG+A+SP EGLKELEK KSLKSAL
Sbjct: 269 IAGWGADGVIVGSAMVKLLGDAKSPTEGLKELEKLTKSLKSAL 311
|
|
| TAIR|locus:2132328 AT4G02610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
Identities = 209/268 (77%), Positives = 246/268 (91%)
Query: 43 TASPTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSD 102
T S TVGL+ETF RLK QGKVALIPYITAGDPDLSTTA+ALK+LDSCGSDIIELGVPYSD
Sbjct: 6 TPSSTVGLSETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPYSD 65
Query: 103 PLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMST 162
PLADGP IQAAA RSL +GTNFN+I+SMLKEV+PQ+SCPIALFTYYNPIL+RGV+N+M+
Sbjct: 66 PLADGPAIQAAARRSLLKGTNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYMTV 125
Query: 163 VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222
+++ G+ GL+VPDVPLEETE+L+ EA K++IELVL TTPTTP +RM AIVEASEGF+YLV
Sbjct: 126 IKNAGVHGLLVPDVPLEETETLRNEARKHQIELVLLTTPTTPKERMNAIVEASEGFIYLV 185
Query: 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282
SS+GVTG R S++ VQ+LL++IKE+++KPVAVGFGISKPEHV+QVA WGADGVIVGSAM
Sbjct: 186 SSVGVTGTRESVNEKVQSLLQQIKEATSKPVAVGFGISKPEHVKQVAEWGADGVIVGSAM 245
Query: 283 VKLLGEAQSPEEGLKELEKFAKSLKSAL 310
VK+LGE++SPE+GLKELE F KSLKSAL
Sbjct: 246 VKILGESESPEQGLKELEFFTKSLKSAL 273
|
|
| TIGR_CMR|GSU_2371 GSU_2371 "tryptophan synthase, alpha subunit" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 111/261 (42%), Positives = 162/261 (62%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+A TF LK + AL+ +ITAGDPDL+ T + LL G+DI+ELGVP+SDP+ADGP
Sbjct: 4 IAGTFAELKHNSRKALVTFITAGDPDLAATEALIPLLAESGADIVELGVPFSDPMADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQ ++ R+LA GT IL M++ V + PI L YYNPIL G++ F + G+
Sbjct: 64 IQLSSERALAAGTTLPKILDMVRRVRTRCQVPIVLMGYYNPILIHGLERFAADASAAGVD 123
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
G+++ D+P EE + A ++ ++++ TPT+ R++ + + GFVY VS GVTG
Sbjct: 124 GVLLVDLPPEEAAEFKACADRHGLDVIFLLTPTSDEGRIRKVARQARGFVYYVSVTGVTG 183
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
AR+ + V + + I+E+ T PV VGFGIS P+ QVA ADGV+VGSA+VKL
Sbjct: 184 ARSGVEASVSSNVAAIREAITVPVVVGFGISTPDQAAQVAA-SADGVVVGSAIVKLFERF 242
Query: 290 QSPEEGLKELEKFAKSLKSAL 310
+ E G +E+ F +L+ A+
Sbjct: 243 TAAELG-REVATFVSALREAI 262
|
|
| TIGR_CMR|CHY_1581 CHY_1581 "tryptophan synthase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 104/260 (40%), Positives = 163/260 (62%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+ + F + +G+ ALI Y GDP+L+ + E +K L + G+D+IE+G+P+SDPLADGPV
Sbjct: 4 IGQVFAEKRSRGEKALIAYTMGGDPNLTFSLEIIKTLAAAGADLIEVGLPFSDPLADGPV 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQ A R+LA G+ +L+++ ++S P+ + +Y NPIL+ GVD F+ G
Sbjct: 64 IQRAGQRALAAGSGPEEVLALIAAARQELSLPLVIMSYLNPILQIGVDEFLRRAAGAGAD 123
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GL++PD+P+EE E ++ A ++L+ PTT R++ IV + GF+Y VS GVTG
Sbjct: 124 GLIIPDLPVEEGEEIRVSAAGYGLDLIPLVAPTTGQKRLEKIVGQASGFIYCVSVTGVTG 183
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE- 288
AR S+ V +LL+ +K+ + PV +GFGI KPE + + + DGVIVGSA+V+++
Sbjct: 184 ARDSLPAEVISLLQNVKKLTELPVCLGFGIGKPEQIAYIKDY-CDGVIVGSALVEIIENY 242
Query: 289 AQSPEEGLKELEKFAKSLKS 308
Q+ E K LE A +++
Sbjct: 243 VQNRMEKDKVLELIATKVQT 262
|
|
| CGD|CAL0004378 TRP5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 5.9e-45, P = 5.9e-45
Identities = 101/249 (40%), Positives = 145/249 (58%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
L ETF R KK+G+ AL+ +ITAG P + T L+ + + G DIIELGVP+SDP+ADGP
Sbjct: 5 LKETFARCKKEGRNALVNFITAGFPTIDDTIPILQNMQNAGVDIIELGVPFSDPIADGPT 64
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A +L G L +L + Q ++ PI L YYNPILK G F+ + G
Sbjct: 65 IQQANNIALDNGITVPKCLELLSQARDQGVTVPIILMGYYNPILKYGEQKFLKDAAEAGA 124
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
G +V D+P EE + E K + V P T DR+K + E ++ F+Y+VS +G T
Sbjct: 125 NGFIVVDLPPEEAIKFRTECTKYGLSYVPLVAPATSNDRLKILGEIADSFIYVVSKMGTT 184
Query: 229 GARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286
GA +S +Q L +++ + P+AVGFG+S EH V G ADGV++GS ++ L+
Sbjct: 185 GASTKVSTGIQELCDRVRKYAGPDTPLAVGFGVSTREHFLTV-GEVADGVVIGSKIITLI 243
Query: 287 GEAQSPEEG 295
G+++ E G
Sbjct: 244 GDSKPGERG 252
|
|
| UNIPROTKB|Q59KP3 TRP5 "Likely tryptophan synthetase alpha chain" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 5.9e-45, P = 5.9e-45
Identities = 101/249 (40%), Positives = 145/249 (58%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
L ETF R KK+G+ AL+ +ITAG P + T L+ + + G DIIELGVP+SDP+ADGP
Sbjct: 5 LKETFARCKKEGRNALVNFITAGFPTIDDTIPILQNMQNAGVDIIELGVPFSDPIADGPT 64
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A +L G L +L + Q ++ PI L YYNPILK G F+ + G
Sbjct: 65 IQQANNIALDNGITVPKCLELLSQARDQGVTVPIILMGYYNPILKYGEQKFLKDAAEAGA 124
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
G +V D+P EE + E K + V P T DR+K + E ++ F+Y+VS +G T
Sbjct: 125 NGFIVVDLPPEEAIKFRTECTKYGLSYVPLVAPATSNDRLKILGEIADSFIYVVSKMGTT 184
Query: 229 GARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286
GA +S +Q L +++ + P+AVGFG+S EH V G ADGV++GS ++ L+
Sbjct: 185 GASTKVSTGIQELCDRVRKYAGPDTPLAVGFGVSTREHFLTV-GEVADGVVIGSKIITLI 243
Query: 287 GEAQSPEEG 295
G+++ E G
Sbjct: 244 GDSKPGERG 252
|
|
| TIGR_CMR|BA_1254 BA_1254 "tryptophan synthase, alpha subunit" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 94/236 (39%), Positives = 137/236 (58%)
Query: 59 KQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL 118
+ GK A IPY+ GD L E ++ LD G+ I+E+G+P+SDP+ADGP IQ A R+L
Sbjct: 11 ENGKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRAL 70
Query: 119 ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL 178
G I L EV ++ P L TY NP+L G + F+ + G+ G++VPD+P
Sbjct: 71 DSGVTVKGIFQALIEVRKEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPY 130
Query: 179 EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHV 238
EE + + + I L+ T T+P +R+K I SEGFVY V+ GVTG R + +
Sbjct: 131 EEQDIIAPLLREANIALIPLVTVTSPIERIKKITSESEGFVYAVTVAGVTGVRQNFKDEI 190
Query: 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEE 294
+ L ++K + PV GFGIS EHV+++ DGV+VGS +++LL E + EE
Sbjct: 191 HSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELL-ENEKREE 244
|
|
| TIGR_CMR|SPO_0815 SPO_0815 "tryptophan synthase, alpha subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 104/254 (40%), Positives = 144/254 (56%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F LK QGK A + Y+ AGDPD T+ E +K L G DIIELG+P++DP+ADGP IQ A
Sbjct: 8 FAELKAQGKKAFVSYVMAGDPDFDTSLELVKGLPGAGVDIIELGLPFTDPMADGPTIQLA 67
Query: 114 ATRSLARGTNFNAILSMLKEV-VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLV 172
R+L G L + E + PI + YYNPI RGVD F++ + GI GL+
Sbjct: 68 GQRALDGGMTLQRTLDLATEFRKTDNTTPIVMMGYYNPIYSRGVDRFLADAKAAGIDGLI 127
Query: 173 VPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232
V D+P EE L A + + TPTT R+ +++ + GFVY VS G+TG+
Sbjct: 128 VVDLPPEEDSELCLPAQAAGLNFIRLATPTTDDKRLPRVLQNTSGFVYYVSITGITGSAE 187
Query: 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP 292
+ + V + IK ++ PV VGFGI+ PE + +A ADG +VGSA+V +G A P
Sbjct: 188 AEATDVGPEVARIKAATDLPVIVGFGINTPEKSRAIASV-ADGAVVGSAIVGQIG-AGKP 245
Query: 293 EEGLKELEKFAKSL 306
+ E+ F K+L
Sbjct: 246 ---VAEVLAFVKTL 256
|
|
| TIGR_CMR|DET_1488 DET_1488 "tryptophan synthase, alpha subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 91/251 (36%), Positives = 150/251 (59%)
Query: 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA 119
Q + +LI YIT G PD+ TT + LL+ G DIIELG+P+SDPLADG IQ A+ ++L
Sbjct: 9 QKRKSLIAYITVGYPDIETTLRLVPLLEENGVDIIELGIPFSDPLADGVTIQNASYQALQ 68
Query: 120 RGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE 179
G LS+ + ++S P+ YYNPI G+ F G+ G ++PD+P
Sbjct: 69 NGVTPEVCLSVAALLKEKISIPMVFMGYYNPIYNYGLTKFCQKCATAGVSGFIIPDLPPG 128
Query: 180 ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQ 239
E + + A + ++++ PT+ +R+K + S GF+YLVS GVTGA A++ +
Sbjct: 129 EAQDIDFAATEAGLDIIFLLAPTSTDERIKLVAAKSRGFIYLVSHSGVTGATANLPADLS 188
Query: 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
+ + +++++ +P+AVGFGIS PE Q +A + +DG+IVGS +++L+ + L+++
Sbjct: 189 SFVNRVRKTARQPLAVGFGISTPEQAQNIAKF-SDGIIVGSRILQLV----QTDPSLEKV 243
Query: 300 EKFAKSLKSAL 310
F + L+ +L
Sbjct: 244 ATFIRQLRQSL 254
|
|
| ASPGD|ASPL0000007723 trpB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 1.1e-42, P = 1.1e-42
Identities = 92/259 (35%), Positives = 154/259 (59%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+ TF ++K++ + AL+ YITAG P + + + L L++ G+DIIELGVP++DP+ADGP
Sbjct: 4 IKNTFEKVKREKRAALVAYITAGYPTIEESVDILLGLENGGADIIELGVPFTDPIADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A T++LA G + +L M++ + + PI L YYNP+L G + + +++G+
Sbjct: 64 IQKANTKALANGVTVSTVLEMVRSARNRGLKAPIMLMGYYNPMLSYGEERMLRDCKEVGV 123
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
G ++ D+P EE + + V P T RMK + + ++ F+Y+VS +GVT
Sbjct: 124 NGFIMVDLPPEEAVRFRDLCTSTGLSYVPLIAPATSESRMKLLCKIADSFIYVVSRMGVT 183
Query: 229 GARASISGHVQTLLREI-KESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287
GA ++S ++ LL + K S P A+GFG+S EH V ++GV++GS ++ +LG
Sbjct: 184 GATGTLSSNIPELLARVHKWSGNVPTALGFGVSTREHFLSVQEI-SEGVVIGSQIITVLG 242
Query: 288 EAQSPEEGLKELEKFAKSL 306
EA + + K E++ S+
Sbjct: 243 EAPAGQAAQKA-EEYLSSV 260
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7TUC8 | TRPA_PROMP | 4, ., 2, ., 1, ., 2, 0 | 0.4576 | 0.8327 | 0.9283 | yes | no |
| A9BHQ2 | TRPA_PETMO | 4, ., 2, ., 1, ., 2, 0 | 0.3961 | 0.8070 | 0.9728 | yes | no |
| Q39SS2 | TRPA_GEOMG | 4, ., 2, ., 1, ., 2, 0 | 0.4534 | 0.8231 | 0.9516 | yes | no |
| Q8TLP4 | TRPA_METAC | 4, ., 2, ., 1, ., 2, 0 | 0.4252 | 0.8167 | 0.9338 | yes | no |
| Q8DLN9 | TRPA_THEEB | 4, ., 2, ., 1, ., 2, 0 | 0.5287 | 0.8295 | 0.9699 | yes | no |
| Q67PJ3 | TRPA_SYMTH | 4, ., 2, ., 1, ., 2, 0 | 0.4153 | 0.8295 | 0.9247 | yes | no |
| Q46LX8 | TRPA_PROMT | 4, ., 2, ., 1, ., 2, 0 | 0.4980 | 0.8424 | 0.9667 | yes | no |
| Q74AI3 | TRPA_GEOSL | 4, ., 2, ., 1, ., 2, 0 | 0.4252 | 0.8327 | 0.9810 | yes | no |
| B0K8T7 | TRPA_THEP3 | 4, ., 2, ., 1, ., 2, 0 | 0.4099 | 0.8327 | 0.9885 | yes | no |
| Q2LUE0 | TRPA_SYNAS | 4, ., 2, ., 1, ., 2, 0 | 0.4351 | 0.8327 | 0.9773 | yes | no |
| Q3AYG5 | TRPA_SYNS9 | 4, ., 2, ., 1, ., 2, 0 | 0.5037 | 0.8424 | 0.9739 | yes | no |
| A2C129 | TRPA_PROM1 | 4, ., 2, ., 1, ., 2, 0 | 0.4980 | 0.8424 | 0.9849 | yes | no |
| Q7TV26 | TRPA_PROMM | 4, ., 2, ., 1, ., 2, 0 | 0.5115 | 0.8327 | 0.9418 | yes | no |
| P77960 | TRPA_SYNY3 | 4, ., 2, ., 1, ., 2, 0 | 0.5325 | 0.8360 | 0.9848 | N/A | no |
| O22765 | TRPA1_ARATH | 4, ., 1, ., 2, ., 8 | 0.7798 | 0.8617 | 0.9745 | no | no |
| B1WNQ1 | TRPA_CYAA5 | 4, ., 2, ., 1, ., 2, 0 | 0.5287 | 0.8360 | 0.9848 | yes | no |
| Q7TTU8 | TRPA_SYNPX | 4, ., 2, ., 1, ., 2, 0 | 0.5095 | 0.8231 | 0.9516 | yes | no |
| Q7VD15 | TRPA_PROMA | 4, ., 2, ., 1, ., 2, 0 | 0.5076 | 0.8327 | 0.9700 | yes | no |
| Q10W95 | TRPA_TRIEI | 4, ., 2, ., 1, ., 2, 0 | 0.5568 | 0.8424 | 0.9886 | yes | no |
| Q3ABS4 | TRPA_CARHZ | 4, ., 2, ., 1, ., 2, 0 | 0.4 | 0.8295 | 0.9662 | yes | no |
| Q465F4 | TRPA_METBF | 4, ., 2, ., 1, ., 2, 0 | 0.4329 | 0.8167 | 0.9657 | yes | no |
| A4XNC8 | TRPA_PSEMY | 4, ., 2, ., 1, ., 2, 0 | 0.3931 | 0.8360 | 0.9665 | yes | no |
| B7JUK2 | TRPA_CYAP8 | 4, ., 2, ., 1, ., 2, 0 | 0.5708 | 0.8360 | 0.9737 | yes | no |
| Q7NHC5 | TRPA_GLOVI | 4, ., 2, ., 1, ., 2, 0 | 0.5115 | 0.8327 | 0.9384 | yes | no |
| B9LKB2 | TRPA_CHLSY | 4, ., 2, ., 1, ., 2, 0 | 0.3854 | 0.8327 | 0.9736 | yes | no |
| Q8KX32 | TRPA_SYNP2 | 4, ., 2, ., 1, ., 2, 0 | 0.5363 | 0.8360 | 0.9848 | yes | no |
| B0K2T8 | TRPA_THEPX | 4, ., 2, ., 1, ., 2, 0 | 0.4176 | 0.8327 | 0.9885 | yes | no |
| B0C6F8 | TRPA_ACAM1 | 4, ., 2, ., 1, ., 2, 0 | 0.5325 | 0.8360 | 0.9737 | yes | no |
| A9WFI5 | TRPA_CHLAA | 4, ., 2, ., 1, ., 2, 0 | 0.3854 | 0.8327 | 0.9736 | yes | no |
| P07344 | TRPA_PSEAE | 4, ., 2, ., 1, ., 2, 0 | 0.3984 | 0.8006 | 0.9291 | yes | no |
| Q5N324 | TRPA_SYNP6 | 4, ., 2, ., 1, ., 2, 0 | 0.5095 | 0.8231 | 0.9624 | yes | no |
| Q42529 | TRPA2_ARATH | 4, ., 1, ., 2, ., 8 | 0.8056 | 0.9067 | 0.9038 | yes | no |
| B0JXU3 | TRPA_MICAN | 4, ., 2, ., 1, ., 2, 0 | 0.5593 | 0.8360 | 0.9848 | yes | no |
| Q31R76 | TRPA_SYNE7 | 4, ., 2, ., 1, ., 2, 0 | 0.5095 | 0.8231 | 0.9624 | yes | no |
| Q8PT96 | TRPA_METMA | 4, ., 2, ., 1, ., 2, 0 | 0.3941 | 0.8520 | 0.9778 | yes | no |
| Q3MBD2 | TRPA_ANAVT | 4, ., 2, ., 1, ., 2, 0 | 0.5440 | 0.8360 | 0.9774 | yes | no |
| A1AN65 | TRPA_PELPD | 4, ., 2, ., 1, ., 2, 0 | 0.4122 | 0.8360 | 0.9737 | yes | no |
| B8HPH2 | TRPA_CYAP4 | 4, ., 2, ., 1, ., 2, 0 | 0.5437 | 0.8424 | 0.9812 | yes | no |
| Q8R9N0 | TRPA_THETN | 4, ., 2, ., 1, ., 2, 0 | 0.4202 | 0.8199 | 0.9732 | yes | no |
| A7I4T3 | TRPA_METB6 | 4, ., 2, ., 1, ., 2, 0 | 0.4094 | 0.8135 | 0.9547 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.2.1.20 | 0.914 |
| 3rd Layer | 4.2.1 | 0.921 |
| 3rd Layer | 4.1.2 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 311 | |||
| PLN02591 | 250 | PLN02591, PLN02591, tryptophan synthase | 1e-168 | |
| PRK13111 | 258 | PRK13111, trpA, tryptophan synthase subunit alpha; | 1e-121 | |
| cd04724 | 242 | cd04724, Tryptophan_synthase_alpha, Ttryptophan sy | 1e-115 | |
| pfam00290 | 258 | pfam00290, Trp_syntA, Tryptophan synthase alpha ch | 1e-111 | |
| COG0159 | 265 | COG0159, TrpA, Tryptophan synthase alpha chain [Am | 1e-111 | |
| TIGR00262 | 256 | TIGR00262, trpA, tryptophan synthase, alpha subuni | 1e-101 | |
| CHL00200 | 263 | CHL00200, trpA, tryptophan synthase alpha subunit; | 3e-98 | |
| PRK13125 | 244 | PRK13125, trpA, tryptophan synthase subunit alpha; | 2e-31 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 6e-09 | |
| cd04729 | 219 | cd04729, NanE, N-acetylmannosamine-6-phosphate epi | 3e-05 | |
| pfam00977 | 230 | pfam00977, His_biosynth, Histidine biosynthesis pr | 7e-05 | |
| cd00331 | 217 | cd00331, IGPS, Indole-3-glycerol phosphate synthas | 2e-04 | |
| COG0134 | 254 | COG0134, TrpC, Indole-3-glycerol phosphate synthas | 3e-04 | |
| pfam01884 | 231 | pfam01884, PcrB, PcrB family | 4e-04 | |
| PRK01130 | 221 | PRK01130, PRK01130, N-acetylmannosamine-6-phosphat | 8e-04 | |
| cd04723 | 233 | cd04723, HisA_HisF, Phosphoribosylformimino-5-amin | 8e-04 | |
| pfam00977 | 230 | pfam00977, His_biosynth, Histidine biosynthesis pr | 9e-04 | |
| cd00564 | 196 | cd00564, TMP_TenI, Thiamine monophosphate synthase | 9e-04 | |
| PRK00278 | 260 | PRK00278, trpC, indole-3-glycerol-phosphate syntha | 0.001 | |
| COG1411 | 229 | COG1411, COG1411, Uncharacterized protein related | 0.002 |
| >gnl|CDD|178201 PLN02591, PLN02591, tryptophan synthase | Back alignment and domain information |
|---|
Score = 467 bits (1203), Expect = e-168
Identities = 196/250 (78%), Positives = 227/250 (90%)
Query: 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG 121
KVA IPYITAGDPDL TTAEAL+LLD+CG+D+IELGVPYSDPLADGPVIQAAATR+L +G
Sbjct: 1 KVAFIPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKG 60
Query: 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 181
T ++++SMLKEV PQ+SCPI LFTYYNPILKRG+D FM+T+++ G+ GLVVPD+PLEET
Sbjct: 61 TTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEET 120
Query: 182 ESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTL 241
E+L+ EA KN IELVL TTPTTPT+RMKAI EASEGFVYLVSS GVTGARAS+SG V++L
Sbjct: 121 EALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESL 180
Query: 242 LREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
L+E+KE + KPVAVGFGISKPEH +Q+AGWGADGVIVGSAMVK LGEA+SPEEGLK LEK
Sbjct: 181 LQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGEAKSPEEGLKRLEK 240
Query: 302 FAKSLKSALP 311
AKSLK+ALP
Sbjct: 241 LAKSLKAALP 250
|
Length = 250 |
| >gnl|CDD|237285 PRK13111, trpA, tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 348 bits (896), Expect = e-121
Identities = 124/260 (47%), Positives = 169/260 (65%), Gaps = 5/260 (1%)
Query: 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQ 111
F LK +G+ ALIPYITAGDPDL T+ E +K L G+DIIELG+P+SDP+ADGPVIQ
Sbjct: 1 ALFAALKAEGRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQ 60
Query: 112 AAATRSLARGTNFNAILSMLKEV-VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
AA+ R+LA G + +++E+ + PI L TYYNPI + GV+ F + + G+ G
Sbjct: 61 AASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDG 120
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
L++PD+P EE E L+ A K+ ++L+ PTT +R+K I + GFVY VS GVTGA
Sbjct: 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGA 180
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ 290
R++ + + L+ +K + PVAVGFGIS PE +A ADGVIVGSA+VK++ E
Sbjct: 181 RSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA-VADGVIVGSALVKIIEEN- 238
Query: 291 SPEEGLKELEKFAKSLKSAL 310
E L+ L F K LK+AL
Sbjct: 239 --PEALEALAAFVKELKAAL 256
|
Length = 258 |
| >gnl|CDD|240075 cd04724, Tryptophan_synthase_alpha, Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Score = 332 bits (853), Expect = e-115
Identities = 121/244 (49%), Positives = 171/244 (70%), Gaps = 2/244 (0%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
ALIPYITAGDPDL TT E LK L G+DIIELG+P+SDP+ADGPVIQAA+ R+LA G
Sbjct: 1 ALIPYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVT 60
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
+L ++KE+ + + PI L YYNPIL+ G++ F+ ++ G+ GL++PD+P EE E
Sbjct: 61 LKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEE 120
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
++ A + ++L+ PTTP +R+K I E + GF+Y VS GVTGAR + ++ L++
Sbjct: 121 FREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIK 180
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303
I++ + P+AVGFGIS PE +VA + ADGVIVGSA+VK++ E EE L+ L++ A
Sbjct: 181 RIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIEEG-GEEEALEALKELA 238
Query: 304 KSLK 307
+SLK
Sbjct: 239 ESLK 242
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. Length = 242 |
| >gnl|CDD|201134 pfam00290, Trp_syntA, Tryptophan synthase alpha chain | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-111
Identities = 123/258 (47%), Positives = 174/258 (67%), Gaps = 3/258 (1%)
Query: 56 RLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAAT 115
LK + + A +P++TAGDPDL TT E L+ L+ G+D IELG+P+SDPLADGP IQ A
Sbjct: 2 NLKAKNEAAFVPFVTAGDPDLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANL 61
Query: 116 RSLARGTNFNAILSMLKEV-VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174
R+LA G + L +++E+ S PI L TYYNP+L G++ F + + G+ GL++P
Sbjct: 62 RALAGGMTLDQTLELVEEIRNKGTSVPIVLMTYYNPVLNYGIERFYAQAAEAGVDGLIIP 121
Query: 175 DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI 234
D+P EE + L++ A K+ I+L+ PTT +R+K I EA+ GFVYLVS GVTGAR +
Sbjct: 122 DLPPEEADPLREAAEKHGIDLIFLVAPTTSDERLKTISEAASGFVYLVSRAGVTGARNAF 181
Query: 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPE 293
+ + L+ +K+ + PVAVGFGIS PEHV+++A GADGVIVGSA+V ++ E PE
Sbjct: 182 NAQLDELVERLKKYTNVPVAVGFGISTPEHVKKIA-AGADGVIVGSAIVDIIEENLDDPE 240
Query: 294 EGLKELEKFAKSLKSALP 311
+ L +LE+F LK+A
Sbjct: 241 QMLAKLEEFVGKLKAATK 258
|
Length = 258 |
| >gnl|CDD|223237 COG0159, TrpA, Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-111
Identities = 128/262 (48%), Positives = 176/262 (67%), Gaps = 3/262 (1%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
L + F +LK + + ALIPY+TAGDPDL T+ E +K L G+DI+ELGVP+SDP+ADGP
Sbjct: 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQAA R+LA G L +++E+ + PI L TYYNPI G++ F+ ++ G+
Sbjct: 64 IQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV 123
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
GL+VPD+P EE++ L K A K+ I+ + PTTP +R+K I EA+ GF+Y VS +GVT
Sbjct: 124 DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVT 183
Query: 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
GAR +S V+ L++ +++ + PV VGFGIS PE QVA ADGVIVGSA+VK++ E
Sbjct: 184 GARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKIIEE 242
Query: 289 AQSPEEGLKELEKFAKSLKSAL 310
EE L+EL K LK+AL
Sbjct: 243 G-LDEEALEELRALVKELKAAL 263
|
Length = 265 |
| >gnl|CDD|161792 TIGR00262, trpA, tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Score = 295 bits (758), Expect = e-101
Identities = 121/256 (47%), Positives = 171/256 (66%), Gaps = 2/256 (0%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F LK++G+ A IP++TAGDP L T+ E +K L G+D +ELGVP+SDPLADGP IQAA
Sbjct: 1 FETLKQRGEGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAA 60
Query: 114 ATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLV 172
R+L G +LK+V + + PI L TYYN I ++GV+ F + +++G+ G++
Sbjct: 61 DLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVL 120
Query: 173 VPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232
V D+PLEE+ L + A K+ ++ + P +R+K I E S+GFVYLVS GVTGAR
Sbjct: 121 VADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARN 180
Query: 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQS 291
+ + L++ +K S KPV VGFGISKPE V+Q GADGVIVGSA+VK++ E +
Sbjct: 181 RAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEENLNT 240
Query: 292 PEEGLKELEKFAKSLK 307
PE+ L+ LE+F ++LK
Sbjct: 241 PEKMLQALEEFVQNLK 256
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]- [AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences [Amino acid biosynthesis, Aromatic amino acid family]. Length = 256 |
| >gnl|CDD|214394 CHL00200, trpA, tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Score = 290 bits (743), Expect = 3e-98
Identities = 121/258 (46%), Positives = 177/258 (68%), Gaps = 5/258 (1%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F +L KQ ALIP+ITAGDPD+ T +ALK+LD G+DIIELG+PYSDPLADGP+IQ A
Sbjct: 8 FEKLDKQ--CALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEA 65
Query: 114 ATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV 173
+ R+L +G N N ILS+L EV ++ PI +FTYYNP+L G++ F+ + G++GL++
Sbjct: 66 SNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLII 125
Query: 174 PDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS 233
PD+P EE++ L IEL+L PT+ R++ I A+ G +YLVS+ GVTG +
Sbjct: 126 PDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTE 185
Query: 234 ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK-LLGEAQSP 292
+ ++ L+ IK+ + KP+ +GFGIS E ++Q+ GW +G+++GSA V+ LLG SP
Sbjct: 186 LDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGS--SP 243
Query: 293 EEGLKELEKFAKSLKSAL 310
E+GL +L +F K K ++
Sbjct: 244 EKGLDQLSEFCKVAKKSI 261
|
Length = 263 |
| >gnl|CDD|237286 PRK13125, trpA, tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-31
Identities = 79/255 (30%), Positives = 131/255 (51%), Gaps = 25/255 (9%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
L+ Y+TAG P++ + E + L DI+ELG+P P DGPVI+ + R
Sbjct: 5 GLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSH-----RKVK 58
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
I +L+EV +S PI L TY + +DNF++ RD+G G++ PD+ ++ +
Sbjct: 59 GLDIWPLLEEVRKDVSVPIILMTYLEDYVDS-LDNFLNMARDVGADGVLFPDLLIDYPDD 117
Query: 184 LQK--EAMKNK-IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV---TGARASISGH 237
L+K E +KNK ++ V FT+P P + + + S F+Y G+ TG +S
Sbjct: 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY----GLRPATGVPLPVS-- 171
Query: 238 VQTLLREIKE-SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 296
V+ ++ ++ K + VGFG+ PE + GADGV+VG+A ++ L + G+
Sbjct: 172 VERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEEL-----EKNGV 226
Query: 297 KELEKFAKSLKSALP 311
+ K ++ AL
Sbjct: 227 ESALNLLKKIRGALD 241
|
Length = 244 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 6e-09
Identities = 55/220 (25%), Positives = 74/220 (33%), Gaps = 24/220 (10%)
Query: 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNF 124
+I + AG P E K G+D I +G SDP +
Sbjct: 1 VILALLAGGPS-GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVL---------- 49
Query: 125 NAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL---EET 181
KEV + P+ + N VD + R G G+ + E
Sbjct: 50 -------KEVAAETDLPLGVQLAINDAAAA-VDIAAAAARAAGADGVEIHGAVGYLARED 101
Query: 182 ESLQKEAMKNKIELVLFT-TPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT 240
L +E + ++ + T A EA V L + G G R
Sbjct: 102 LELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGR-DAVPIADL 160
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280
LL K S PV G GI+ PE + GADGVIVGS
Sbjct: 161 LLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|240080 cd04729, NanE, N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 210 AIVEASEGFVYLVSSI-GVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQV 268
A+ A GF + +++ G T A LL+E++++ PV I+ PE +
Sbjct: 136 ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKA 195
Query: 269 AGWGADGVIVGSA 281
GAD V+VGSA
Sbjct: 196 LELGADAVVVGSA 208
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. Length = 219 |
| >gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 7e-05
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282
L RE+ E+ PV G+ E ++++ G DGVI GSA+
Sbjct: 183 LTRELAEAVNIPVIASGGVGSLEDLKELFSEGVDGVIAGSAL 224
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalyzed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel . This family belong to the common phosphate binding site TIM barrel family. Length = 230 |
| >gnl|CDD|238203 cd00331, IGPS, Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-04
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
GIS PE V+++A GAD V++G ++++ A P L+EL
Sbjct: 180 GISTPEDVKRLAEAGADAVLIGESLMR----APDPGAALREL 217
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. Length = 217 |
| >gnl|CDD|223212 COG0134, TrpC, Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
GIS PE V+++A GAD +VG A+++ A PEE L+EL
Sbjct: 215 GISTPEDVRRLAKAGADAFLVGEALMR----ADDPEEALREL 252
|
Length = 254 |
| >gnl|CDD|202027 pfam01884, PcrB, PcrB family | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 40/247 (16%)
Query: 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127
++T DPD + E ++++ G+D I +G G + +
Sbjct: 10 HLTLLDPDETNPEEIIEIVAESGTDAIMIG-------------------GSTGGVTLDNV 50
Query: 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDN--FMSTVRD------IGIRGLVVPDVPLE 179
+ ++K+V PI LF + R D FMS + +G L V +
Sbjct: 51 VRLIKKVY---GLPIILFPGNPSGVSRYADAIFFMSLLNSANPDWIVGAHALGAQTV-KK 106
Query: 180 ETESLQKEA--MKNKIELVLFTTPTTPTDRMKAIVEASEGFV--YLVSSIGVTGARASIS 235
E + + V + P R K + A L I A +
Sbjct: 107 IGEEIIPMGYIVVEPDSKVGWVGEARPIPRNKPDIAAYYALAAKLLGMRIFYLEAGSGAP 166
Query: 236 GHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEE 294
G V + +K+ + VG GI E +++A GAD ++ G+ + E E
Sbjct: 167 GPVPEEVIAVKKVLDDARLIVGGGIKSGEKAKEMARAGADVIVTGNV----IEEKGKVER 222
Query: 295 GLKELEK 301
+ + +
Sbjct: 223 AIDAILE 229
|
This family contains proteins that are related to PcrB. The function of these proteins is unknown. Length = 231 |
| >gnl|CDD|234907 PRK01130, PRK01130, N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 8e-04
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 226 GVTGARASISGHVQTLLREIKESSTKPV-AVGFGISKPEHVQQVAGWGADGVIVGSA 281
G T LL+E+ ++ PV A G I+ PE ++ GA V+VG A
Sbjct: 149 GYTEETKKPEEPDFALLKELLKAVGCPVIAEG-RINTPEQAKKALELGAHAVVVGGA 204
|
Length = 221 |
| >gnl|CDD|240074 cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279
+V I G S G LL + + PV G+ E ++ + GA G +V
Sbjct: 162 LIVLDIDRVG---SGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVA 218
Query: 280 SAM 282
SA+
Sbjct: 219 SAL 221
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''- phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. Length = 233 |
| >gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 9e-04
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 232 ASISGHVQ--TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284
A+ G L+ EI E PV VG GI E +++ GAD VI+G+A VK
Sbjct: 53 AAKEGRPVNLDLIEEIAEEVFIPVQVGGGIRSLEDAERLLSAGADKVIIGTAAVK 107
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalyzed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel . This family belong to the common phosphate binding site TIM barrel family. Length = 230 |
| >gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 9e-04
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 241 LLREIKESSTKP-VAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
LLREI E P VA+G GI PE+ +V GADGV V SA + A P +EL
Sbjct: 141 LLREIAELVEIPVVAIG-GI-TPENAAEVLAAGADGVAVISA----ITGADDPAAAAREL 194
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. Length = 196 |
| >gnl|CDD|234710 PRK00278, trpC, indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
GI PE ++++A GAD V+VG ++++ A P L+EL
Sbjct: 219 GIFTPEDLKRLAKAGADAVLVGESLMR----ADDPGAALREL 256
|
Length = 260 |
| >gnl|CDD|224329 COG1411, COG1411, Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284
GA + SG LL ++ E S PV +G G+ E ++ + G G GV+V +A+ +
Sbjct: 160 GAVGTKSGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE 215
|
Length = 229 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 100.0 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 100.0 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 100.0 | |
| PLN02591 | 250 | tryptophan synthase | 100.0 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 100.0 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 100.0 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 100.0 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 100.0 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 100.0 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 99.92 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 99.89 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 99.87 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.86 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 99.83 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 99.8 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.8 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 99.8 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 99.79 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 99.78 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 99.78 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 99.77 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 99.71 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 99.7 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 99.69 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.69 | |
| PRK08005 | 210 | epimerase; Validated | 99.68 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 99.67 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 99.67 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.66 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 99.65 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 99.65 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 99.64 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 99.63 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 99.61 | |
| PRK14057 | 254 | epimerase; Provisional | 99.61 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 99.6 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 99.59 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 99.58 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 99.57 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.57 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 99.55 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 99.54 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.54 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 99.53 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.52 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 99.51 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 99.47 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 99.46 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.45 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 99.43 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 99.42 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 99.41 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 99.39 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.36 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.36 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 99.36 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 99.35 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 99.35 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 99.32 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.32 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 99.29 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 99.29 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.29 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.28 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.26 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 99.26 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 99.26 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 99.25 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.24 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.23 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.23 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.22 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.22 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 99.2 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.2 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.19 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 99.17 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.16 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 99.16 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 99.15 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 99.15 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 99.15 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.13 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.12 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 99.12 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 99.11 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.1 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 99.1 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 99.09 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.07 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 99.06 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 99.06 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 99.03 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.03 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 99.01 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.01 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 99.01 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.0 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 98.98 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 98.97 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.95 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 98.95 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 98.95 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 98.94 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.94 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 98.89 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 98.88 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 98.87 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 98.86 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 98.84 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 98.84 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 98.84 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 98.83 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.81 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 98.8 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 98.8 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 98.8 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 98.79 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 98.79 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 98.79 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 98.78 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 98.77 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.76 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 98.76 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 98.76 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.75 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 98.73 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 98.72 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 98.72 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.72 | |
| PLN02535 | 364 | glycolate oxidase | 98.72 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 98.7 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 98.68 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 98.66 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 98.66 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 98.63 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 98.63 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 98.63 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 98.62 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.6 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 98.6 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 98.59 | |
| PLN02979 | 366 | glycolate oxidase | 98.58 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 98.58 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 98.57 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 98.56 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 98.56 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 98.55 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 98.54 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 98.54 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.54 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.52 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 98.52 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 98.52 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.51 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.51 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 98.48 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 98.48 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 98.46 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.44 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.44 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 98.44 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 98.44 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.43 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 98.43 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.43 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 98.43 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 98.42 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 98.41 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 98.41 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 98.4 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.4 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 98.4 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 98.4 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 98.39 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 98.38 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 98.38 | |
| PRK10128 | 267 | 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | 98.37 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 98.34 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 98.34 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 98.34 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 98.34 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 98.31 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 98.29 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 98.28 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 98.26 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 98.25 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 98.25 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 98.24 | |
| PRK13305 | 218 | sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; | 98.24 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.21 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.19 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 98.19 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.17 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 98.17 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 98.17 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 98.16 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 98.16 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 98.15 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 98.15 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.15 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.14 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 98.14 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 98.13 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.11 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 98.1 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 98.1 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 98.09 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 98.08 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.08 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 98.07 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 98.07 | |
| TIGR01740 | 213 | pyrF orotidine 5'-phosphate decarboxylase, subfami | 98.06 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 98.06 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 98.06 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.06 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 98.02 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.01 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 98.01 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 98.01 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 98.01 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 98.01 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 97.98 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 97.98 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 97.97 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 97.97 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.96 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 97.96 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 97.96 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 97.96 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 97.95 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 97.95 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 97.95 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 97.92 | |
| PRK10558 | 256 | alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro | 97.92 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.92 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.91 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 97.91 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 97.91 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.9 | |
| TIGR03239 | 249 | GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co | 97.9 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 97.9 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 97.89 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.89 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 97.89 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 97.89 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 97.89 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 97.86 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 97.86 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 97.86 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.85 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.83 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.83 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 97.82 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 97.82 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 97.82 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.82 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.81 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 97.8 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 97.8 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 97.8 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 97.79 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 97.79 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.79 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 97.78 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 97.77 | |
| TIGR02311 | 249 | HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola | 97.77 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 97.76 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 97.75 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 97.75 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 97.74 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 97.74 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.73 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 97.73 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.73 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 97.73 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 97.73 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 97.73 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 97.72 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 97.71 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 97.7 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 97.7 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 97.69 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 97.68 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.68 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 97.68 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 97.67 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 97.64 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 97.63 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 97.63 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 97.61 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 97.61 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 97.59 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 97.59 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.58 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 97.57 | |
| COG0149 | 251 | TpiA Triosephosphate isomerase [Carbohydrate trans | 97.57 | |
| cd00311 | 242 | TIM Triosephosphate isomerase (TIM) is a glycolyti | 97.54 | |
| cd00740 | 252 | MeTr MeTr subgroup of pterin binding enzymes. This | 97.53 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 97.53 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 97.53 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 97.52 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 97.51 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.48 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 97.48 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 97.48 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 97.47 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 97.46 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 97.45 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 97.45 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 97.45 | |
| KOG4013 | 255 | consensus Predicted Cu2+ homeostasis protein CutC | 97.45 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 97.44 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 97.44 | |
| TIGR00676 | 272 | fadh2 5,10-methylenetetrahydrofolate reductase, pr | 97.43 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 97.42 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 97.4 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 97.4 | |
| PF00215 | 226 | OMPdecase: Orotidine 5'-phosphate decarboxylase / | 97.4 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 97.39 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 97.38 | |
| PRK14565 | 237 | triosephosphate isomerase; Provisional | 97.38 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 97.37 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 97.36 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 97.35 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.34 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.32 | |
| TIGR00677 | 281 | fadh2_euk methylenetetrahydrofolate reductase, euk | 97.31 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 97.29 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 97.28 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 97.26 | |
| PRK08645 | 612 | bifunctional homocysteine S-methyltransferase/5,10 | 97.26 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 97.26 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 97.26 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 97.25 | |
| PRK00042 | 250 | tpiA triosephosphate isomerase; Provisional | 97.25 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 97.24 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 97.23 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.23 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 97.21 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 97.21 | |
| PF02219 | 287 | MTHFR: Methylenetetrahydrofolate reductase; InterP | 97.2 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 97.2 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 97.18 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 97.17 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 97.16 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 97.15 | |
| cd04725 | 216 | OMP_decarboxylase_like Orotidine 5'-phosphate deca | 97.15 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 97.13 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 97.12 | |
| PRK14567 | 253 | triosephosphate isomerase; Provisional | 97.11 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 97.1 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 97.09 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 97.08 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 97.06 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 97.06 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.05 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 97.04 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 97.03 | |
| PRK09432 | 296 | metF 5,10-methylenetetrahydrofolate reductase; Pro | 97.02 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.01 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 96.97 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 96.95 | |
| PLN02389 | 379 | biotin synthase | 96.94 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 96.94 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.91 | |
| PTZ00333 | 255 | triosephosphate isomerase; Provisional | 96.89 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 96.88 | |
| cd00537 | 274 | MTHFR Methylenetetrahydrofolate reductase (MTHFR). | 96.88 | |
| PRK06852 | 304 | aldolase; Validated | 96.87 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 96.84 | |
| PLN02429 | 315 | triosephosphate isomerase | 96.83 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 96.82 | |
| PLN02540 | 565 | methylenetetrahydrofolate reductase | 96.81 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.8 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 96.79 | |
| PLN02561 | 253 | triosephosphate isomerase | 96.77 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 96.73 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 96.7 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 96.69 | |
| PRK14905 | 355 | triosephosphate isomerase/PTS system glucose/sucro | 96.68 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 96.67 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 96.62 | |
| PRK03739 | 552 | 2-isopropylmalate synthase; Validated | 96.62 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 96.61 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 96.61 | |
| PF03328 | 221 | HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family | 96.6 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 96.59 | |
| TIGR00419 | 205 | tim triosephosphate isomerase. Triosephosphate iso | 96.59 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 96.57 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 96.57 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 96.56 | |
| TIGR00677 | 281 | fadh2_euk methylenetetrahydrofolate reductase, euk | 96.54 | |
| PRK15108 | 345 | biotin synthase; Provisional | 96.52 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 96.52 | |
| PRK09432 | 296 | metF 5,10-methylenetetrahydrofolate reductase; Pro | 96.51 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 96.51 | |
| COG0113 | 330 | HemB Delta-aminolevulinic acid dehydratase [Coenzy | 96.51 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 96.5 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 96.5 | |
| PRK08508 | 279 | biotin synthase; Provisional | 96.48 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 96.48 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 96.47 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 96.46 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 96.46 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 96.45 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 96.42 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.42 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 96.41 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 96.4 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 96.39 | |
| PRK06256 | 336 | biotin synthase; Validated | 96.39 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 96.39 | |
| PRK09283 | 323 | delta-aminolevulinic acid dehydratase; Validated | 96.39 | |
| TIGR00676 | 272 | fadh2 5,10-methylenetetrahydrofolate reductase, pr | 96.38 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.37 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 96.34 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 96.33 | |
| cd00537 | 274 | MTHFR Methylenetetrahydrofolate reductase (MTHFR). | 96.33 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 96.31 | |
| COG3836 | 255 | HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola | 96.31 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 96.31 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 96.3 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 96.3 | |
| cd00384 | 314 | ALAD_PBGS Porphobilinogen synthase (PBGS), which i | 96.29 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 96.29 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 96.28 | |
| PRK15492 | 260 | triosephosphate isomerase; Provisional | 96.27 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 96.25 | |
| COG5564 | 276 | Predicted TIM-barrel enzyme, possibly a dioxygenas | 96.25 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 96.25 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 96.24 | |
| PRK09490 | 1229 | metH B12-dependent methionine synthase; Provisiona | 96.24 | |
| PRK13384 | 322 | delta-aminolevulinic acid dehydratase; Provisional | 96.22 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.22 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 96.21 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 96.18 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.18 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 96.17 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 96.16 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.15 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 96.14 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 96.14 | |
| PF00121 | 244 | TIM: Triosephosphate isomerase; InterPro: IPR00065 | 96.13 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 96.12 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 96.1 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 96.1 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 96.06 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 96.05 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 96.04 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 96.02 | |
| COG0284 | 240 | PyrF Orotidine-5'-phosphate decarboxylase [Nucleot | 96.02 | |
| PLN02540 | 565 | methylenetetrahydrofolate reductase | 96.0 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 95.97 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 95.97 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 95.96 | |
| PRK07094 | 323 | biotin synthase; Provisional | 95.94 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 95.93 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 95.92 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 95.9 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 95.85 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 95.85 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 95.82 | |
| TIGR02082 | 1178 | metH 5-methyltetrahydrofolate--homocysteine methyl | 95.82 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 95.8 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 95.78 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 95.76 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 95.76 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 95.75 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 95.68 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 95.68 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 95.67 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 95.67 | |
| PRK14566 | 260 | triosephosphate isomerase; Provisional | 95.67 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 95.65 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 95.65 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 95.65 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 95.61 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 95.6 | |
| cd04824 | 320 | eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas | 95.59 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 95.59 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 95.56 | |
| PRK04165 | 450 | acetyl-CoA decarbonylase/synthase complex subunit | 95.55 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 95.54 | |
| PRK15452 | 443 | putative protease; Provisional | 95.5 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 95.48 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.46 | |
| cd00453 | 340 | FTBP_aldolase_II Fructose/tagarose-bisphosphate al | 95.44 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 95.4 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 95.39 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 95.38 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 95.38 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 95.37 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.37 | |
| cd08579 | 220 | GDPD_memb_like Glycerophosphodiester phosphodieste | 95.35 | |
| cd04823 | 320 | ALAD_PBGS_aspartate_rich Porphobilinogen synthase | 95.35 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 95.35 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 95.34 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 95.3 | |
| cd02072 | 128 | Glm_B12_BD B12 binding domain of glutamate mutase | 95.27 |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-76 Score=542.54 Aligned_cols=262 Identities=49% Similarity=0.844 Sum_probs=252.8
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|+|+++.|+++++++|++||+|+|+|||+++++.++++.|.++|+|+||||+|||||+||||+||+|+.|||++|+++++
T Consensus 1 m~r~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~ 80 (265)
T COG0159 1 MSRLDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLED 80 (265)
T ss_pred CchHHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 127 ILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 127 ~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
+|++++++|++ .++|+++|+||||++++|+++|++.|+++|+||+|+||||+||..++.+.+++|||+.|++++|+|++
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~ 160 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD 160 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 99999999965 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+|++++++.++||+|++|++|+||.+......+.++++++|+.+++|+++|||||++||++++.++ ||||||||||++.
T Consensus 161 ~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~ 239 (265)
T COG0159 161 ERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKI 239 (265)
T ss_pred HHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHHH
Confidence 999999999999999999999999998876668999999999999999999999999999999999 9999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHhhC
Q 021527 286 LGEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
++++.+ ++.++++.+|+++|++++
T Consensus 240 i~~~~~-~~~~~~~~~l~~~l~~~~ 263 (265)
T COG0159 240 IEEGLD-EEALEELRALVKELKAAL 263 (265)
T ss_pred HHhccc-hhhHHHHHHHHHHHHHHh
Confidence 987533 567999999999999875
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-74 Score=535.09 Aligned_cols=261 Identities=45% Similarity=0.857 Sum_probs=249.8
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|++|++.|+++ ++|++||+|+++||||++++.++++.|+++|||+||||+|||||+||||+||+|+.|||++|+++++
T Consensus 1 M~~i~~~f~~~--~~~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~ 78 (263)
T CHL00200 1 MNTISNVFEKL--DKQCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNK 78 (263)
T ss_pred CchHHHHHHHh--cCCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHH
Confidence 78899999876 4788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
+|++++++|++.++|+++|+|||++++||.++|++.|+++|+||+++||||+||..++.+.|+++|++.|++++|+|+++
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~e 158 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKS 158 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|++.+++.++||+|+||..|+||.+..++..+.++++++|+.+++|++|||||+++||++++.++|||||||||++++.+
T Consensus 159 ri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 159 RIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred HHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHhhC
Q 021527 287 GEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
++ .+.++.++++.+|+++++.+.
T Consensus 239 ~~-~~~~~~~~~~~~~~~~~~~~~ 261 (263)
T CHL00200 239 LG-SSPEKGLDQLSEFCKVAKKSI 261 (263)
T ss_pred Hh-cChhhHHHHHHHHHHHHHHHh
Confidence 74 234567899999999998764
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-75 Score=536.26 Aligned_cols=257 Identities=49% Similarity=0.873 Sum_probs=236.8
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
|+++|+++|++||+|+++||||++++.++++.|+++|+|+||||+|||||+||||+||+|+.|||++|++++++|+++++
T Consensus 1 f~~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ 80 (259)
T PF00290_consen 1 FAELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKE 80 (259)
T ss_dssp HHHHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred ChhHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-ccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 134 VV-PQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 134 ir-~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
+| +..++|+++|+|||++++||.++|++.|+++|+||+|+||||+||..++++.|+++|++.|++++|+|+++|+++++
T Consensus 81 ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~ 160 (259)
T PF00290_consen 81 IRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIA 160 (259)
T ss_dssp HHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHH
T ss_pred HhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH
Confidence 99 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCC-
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS- 291 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~- 291 (311)
+.+.||+|++|+.|+||.+..++..+.++++++|+.+++||++||||+++||++++. .|||||||||+|++.+++...
T Consensus 161 ~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~~~ 239 (259)
T PF00290_consen 161 KQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENGDD 239 (259)
T ss_dssp HH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTCCH
T ss_pred HhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcccc
Confidence 999999999999999999998888899999999999999999999999999999999 779999999999999986433
Q ss_pred chhHHHHHHHHHHHHHhhCC
Q 021527 292 PEEGLKELEKFAKSLKSALP 311 (311)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~ 311 (311)
.+..++++.+++++|+.+++
T Consensus 240 ~~~~~~~~~~~~~~lk~~~~ 259 (259)
T PF00290_consen 240 AEKFLKELKEFVRELKEATK 259 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 46679999999999998864
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-73 Score=521.25 Aligned_cols=250 Identities=78% Similarity=1.236 Sum_probs=240.2
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
+++||+|+++||||++++.++++.|+++|||+||||+|||||+||||+||+|+.|||++|++++++|++++++|++.++|
T Consensus 1 ~~~li~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p 80 (250)
T PLN02591 1 KVAFIPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCP 80 (250)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+++|+|||++++||.++|+++|+++|+||+|+||||+||..++++.++++|++.|++++|+|+++|++++++.+.||+|+
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~ 160 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYL 160 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~ 301 (311)
+|+.|+||.++..++.+.++++++|+.+++||++||||+++||++++.++|||||||||+|++.+++..++++.++++.+
T Consensus 161 Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~~~~~~~~~~~~~~~ 240 (250)
T PLN02591 161 VSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGEAKSPEEGLKRLEK 240 (250)
T ss_pred eeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhhhccChhHHHHHHHH
Confidence 99999999999888889999999999999999999999999999999999999999999999999764345567889999
Q ss_pred HHHHHHhhCC
Q 021527 302 FAKSLKSALP 311 (311)
Q Consensus 302 ~~~~l~~~~~ 311 (311)
|+++|+.+++
T Consensus 241 ~~~~l~~~~~ 250 (250)
T PLN02591 241 LAKSLKAALP 250 (250)
T ss_pred HHHHHHhhcC
Confidence 9999998764
|
|
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-72 Score=488.48 Aligned_cols=262 Identities=55% Similarity=0.911 Sum_probs=248.4
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
..|++.|.++|++||.+|++|+|+||||.+++.++++.|+++|+|+||||+|||||+||||.||+++.+||.+|++++++
T Consensus 3 eql~~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i 82 (268)
T KOG4175|consen 3 EQLSETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSI 82 (268)
T ss_pred hHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 128 LSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 128 ~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
++++++.|.+ +.+||++|+||||+++||.++|++.++++|++|+|++|+|+||+..++++|+++|+.+|++++|+|+++
T Consensus 83 ~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtde 162 (268)
T KOG4175|consen 83 IEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDE 162 (268)
T ss_pred HHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHH
Confidence 9999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
|++.+++.+++|||+||++|+||.+...+..+.++++|+|+.+ +.|+.||||||++||.+++.++ ||||||||++++.
T Consensus 163 Rmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~l 241 (268)
T KOG4175|consen 163 RMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVKL 241 (268)
T ss_pred HHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHHH
Confidence 9999999999999999999999999999999999999999998 8999999999999999999999 9999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHhhC
Q 021527 286 LGEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
+.++..++....+.+=|.+.++.++
T Consensus 242 ~g~ae~g~~~~v~~Ey~~~~lk~a~ 266 (268)
T KOG4175|consen 242 LGEAESGEQGLVELEYFTKSLKSAL 266 (268)
T ss_pred hccCCCccchhHHHHHHHHHhhccc
Confidence 9887655555555555555566554
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-70 Score=503.98 Aligned_cols=254 Identities=49% Similarity=0.852 Sum_probs=242.7
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
.|+++++++|++||+|+++||||++++.++++.|+++|||+||||+|||||+||||+||+|+.|||++|++++++|++++
T Consensus 2 ~~~~~~~~~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~ 81 (258)
T PRK13111 2 LFAALKAEGRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVR 81 (258)
T ss_pred hhHHHHhcCCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-ccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 133 EVV-PQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 133 ~ir-~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
++| +..++|+++|+|||++++||+++|++.|+++|+||+|+||||+||..++.+.++++|++.|++++|+|+++|++.+
T Consensus 82 ~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i 161 (258)
T PRK13111 82 EIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKI 161 (258)
T ss_pred HHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH
Confidence 999 5589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCC
Q 021527 212 VEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS 291 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~ 291 (311)
++.+.||||++++.|+||.++..+..+.++++++|+.+++|+++||||++++|++++.++ ||||||||+|++.+++.
T Consensus 162 ~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~~~-- 238 (258)
T PRK13111 162 ASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIEEN-- 238 (258)
T ss_pred HHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHHhc--
Confidence 999999999999999999988888889999999999999999999999999999999987 99999999999999752
Q ss_pred chhHHHHHHHHHHHHHhhC
Q 021527 292 PEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~ 310 (311)
. ..++++.+|++++++++
T Consensus 239 ~-~~~~~~~~~~~~l~~~~ 256 (258)
T PRK13111 239 P-EALEALAAFVKELKAAL 256 (258)
T ss_pred c-hHHHHHHHHHHHHHHHh
Confidence 1 56889999999998765
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-68 Score=493.31 Aligned_cols=253 Identities=47% Similarity=0.808 Sum_probs=239.3
Q ss_pred HHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 55 TRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 55 ~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
+++++++|++||+|+++||||++++.+++++|+++|||+||||+|||||+||||+||+|+.|||++|++++++|++++++
T Consensus 2 ~~~~~~~~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~i 81 (256)
T TIGR00262 2 ETLKQRGEGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKV 81 (256)
T ss_pred chhhhcCCceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH
Q 021527 135 VPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 135 r~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~ 213 (311)
|++ .++|+++|+|+||+++||.++|++.++++|+||+++||+|+||..++.+.++++|++.+++++|+|+.+|++.+++
T Consensus 82 r~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~ 161 (256)
T TIGR00262 82 RQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAE 161 (256)
T ss_pred HhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHH
Confidence 977 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcC-Cc
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ-SP 292 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~-~~ 292 (311)
.+.||+|++|+.|+||.+..+++++.++++++|+.+++||+|||||+|+||++++.++|||||||||++++.+++.. ++
T Consensus 162 ~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~~~~~~ 241 (256)
T TIGR00262 162 KSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEENLNTP 241 (256)
T ss_pred hCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhccCCH
Confidence 99999999999999999877888899999999999999999999999999999999999999999999999997631 34
Q ss_pred hhHHHHHHHHHHHHH
Q 021527 293 EEGLKELEKFAKSLK 307 (311)
Q Consensus 293 ~~~~~~~~~~~~~l~ 307 (311)
++.++.+.+|+++|+
T Consensus 242 ~~~~~~i~~~~~~l~ 256 (256)
T TIGR00262 242 EKMLQALEEFVQNLK 256 (256)
T ss_pred HHHHHHHHHHHHHhC
Confidence 566788888888764
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-59 Score=428.53 Aligned_cols=242 Identities=50% Similarity=0.893 Sum_probs=227.8
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
+||+|+|+|||+.+.+.+.++.|+++|||+||+|+|||||++|||+||+++.|||++|++++.++++++++|+..++|++
T Consensus 1 ~li~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~ 80 (242)
T cd04724 1 ALIPYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIV 80 (242)
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+|+|+||++++|+++|++.++++|+||+++||+|+||..++.+.++++|++.+++++|+|+.+|++.+.+.+.+|+|++|
T Consensus 81 lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s 160 (242)
T cd04724 81 LMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVS 160 (242)
T ss_pred EEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
+.|+||.++..++.+.+.++++|+.+++||+|||||+++|+++++.++ |||+||||+|++.+++.. .+...+.+.+|+
T Consensus 161 ~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~~~~-~~~~~~~~~~~~ 238 (242)
T cd04724 161 RTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIEEGG-EEEALEALKELA 238 (242)
T ss_pred CCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHHHhcc-chhHHHHHHHHH
Confidence 999999988777888899999999999999999999999999999999 999999999999997632 234566677777
Q ss_pred HHHH
Q 021527 304 KSLK 307 (311)
Q Consensus 304 ~~l~ 307 (311)
+.++
T Consensus 239 ~~~~ 242 (242)
T cd04724 239 ESLK 242 (242)
T ss_pred HHhC
Confidence 6653
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-51 Score=374.14 Aligned_cols=235 Identities=30% Similarity=0.521 Sum_probs=217.4
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
.|++||+|+++|||+.+++.++++.++++ +|+||||+|||||++|||+||+++.+|+++|+ +++++++|+.+++
T Consensus 2 ~~~~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~-----~~~v~~vr~~~~~ 75 (244)
T PRK13125 2 MRPGLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDI-----WPLLEEVRKDVSV 75 (244)
T ss_pred CCcceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCc-----HHHHHHHhccCCC
Confidence 36889999999999999999999999998 99999999999999999999999999999998 7899999988999
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
|+++|+|+|+ +.++.++|++.++++|+||+++||+|+ ++..++.+.++++|++.++.++|+|+.+|++.+.+..++
T Consensus 76 Pl~lM~y~n~-~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~ 154 (244)
T PRK13125 76 PIILMTYLED-YVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPL 154 (244)
T ss_pred CEEEEEecch-hhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC
Confidence 9999999999 588999999999999999999999996 578889999999999999999999999999999999999
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 296 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~ 296 (311)
|+|+ +++|+||. .+++++.+.++++|+.+ +.|+++||||++++|++++.+.||||+||||++++.+++. ..
T Consensus 155 ~l~m-sv~~~~g~--~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~-----~~ 226 (244)
T PRK13125 155 FIYY-GLRPATGV--PLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELEKN-----GV 226 (244)
T ss_pred EEEE-EeCCCCCC--CchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhc-----CH
Confidence 9998 88999987 47778888999999988 5899999999999999999999999999999999988641 26
Q ss_pred HHHHHHHHHHHhhC
Q 021527 297 KELEKFAKSLKSAL 310 (311)
Q Consensus 297 ~~~~~~~~~l~~~~ 310 (311)
+++.+++++++.++
T Consensus 227 ~~~~~~~~~~~~~~ 240 (244)
T PRK13125 227 ESALNLLKKIRGAL 240 (244)
T ss_pred HHHHHHHHHHHHHh
Confidence 67788888887664
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=185.16 Aligned_cols=183 Identities=20% Similarity=0.297 Sum_probs=150.6
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE--EEEecCcch
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI--ALFTYYNPI 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi--ilm~Y~n~i 151 (311)
.|.+.+.+.++.+.++|+|.||++ ++||++++... ..++.++++++..+.|+ .+|+|
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~------~~Dg~~~~~~~-----------~~~~~v~~i~~~~~~~v~v~lm~~---- 66 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVD------VMDGHFVPNLT-----------FGPPVLEALRKYTDLPIDVHLMVE---- 66 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc------CCCCCCCCCcc-----------cCHHHHHHHHhcCCCcEEEEeeeC----
Confidence 455789999999999999999998 99999988321 34678999987777884 57765
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEec-CCccCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSS-IGVTGA 230 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~-~G~TG~ 230 (311)
+.++|++.+.++|+||+++++.+.++.....+.++++|++.++.++++++.++++++.... .++|+++. .|.||.
T Consensus 67 ---~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~-d~i~~~~~~~g~tg~ 142 (210)
T TIGR01163 67 ---NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDV-DLVLLMSVNPGFGGQ 142 (210)
T ss_pred ---CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhC-CEEEEEEEcCCCCcc
Confidence 4678999999999999999998877777888999999999999999999999988886554 44677765 356663
Q ss_pred CCCCCchHHHHHHHHhhcCC-----CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 231 RASISGHVQTLLREIKESST-----KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 231 ~~~~~~~~~~~l~~vk~~~~-----~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..++...+.++++++.++ +|++++|||+ +++++++.+.|||++||||++++
T Consensus 143 --~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 143 --KFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred --cccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 345555677888877653 7999999996 79999999999999999999996
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=175.81 Aligned_cols=184 Identities=20% Similarity=0.319 Sum_probs=145.9
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcc
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNP 150 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~ 150 (311)
..|...+.+.++.+.++|+|.||++ .+||++++... -.++.++++++..+.| +.+|+|
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~------~~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~v~l~v~--- 71 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVD------VMDGHFVPNLT-----------IGPPVVEAIRKVTKLPLDVHLMVE--- 71 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe------CccCCcCCCcC-----------cCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 3444678999999999999999998 77887765211 1256778887665444 557765
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEec-CCccC
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSS-IGVTG 229 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~-~G~TG 229 (311)
+.++|++.+.++|+||+++++.+.++..+..+.++++|+...+.+.|+++.++++.+....+ |+|+++. .|+||
T Consensus 72 ----d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d-~i~~~~~~~g~tg 146 (220)
T PRK05581 72 ----NPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLD-LVLLMSVNPGFGG 146 (220)
T ss_pred ----CHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCC-EEEEEEECCCCCc
Confidence 67889999999999999999998877778889999999999998888888899888766555 8888875 45666
Q ss_pred CCCCCCchHHHHHHHHhhcCC-----CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 230 ARASISGHVQTLLREIKESST-----KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~~-----~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. ...+...+.++++|+.++ .+++++|||+ ++++.++.++|+|+|||||+|++
T Consensus 147 ~--~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 147 Q--KFIPEVLEKIRELRKLIDERGLDILIEVDGGIN-ADNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred c--cccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhC
Confidence 3 445556677888877653 3477999998 59999999999999999999997
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=167.16 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=144.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE--EEecCcchh
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA--LFTYYNPIL 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii--lm~Y~n~i~ 152 (311)
|.....+.++.+.++|+|+||++ .+||++++... -.++.++++++..+.|+. +|++ |
T Consensus 10 d~~~~~~~~~~~~~~G~~~i~l~------~~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~v~l~~~-d--- 68 (211)
T cd00429 10 DFANLGEELKRLEEAGADWIHID------VMDGHFVPNLT-----------FGPPVVKALRKHTDLPLDVHLMVE-N--- 68 (211)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe------cccCCCCCccc-----------cCHHHHHHHHhhCCCcEEEEeeeC-C---
Confidence 44667899999999999999997 66776554221 114577888866556653 4443 4
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecC-CccCCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSI-GVTGAR 231 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~-G~TG~~ 231 (311)
..+|++.+.++|+||+++++.+.++..+..+.++++|+..++.+.|+++.++++++... .+++|+++.. |.||.
T Consensus 69 ---~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~d~i~~~~~~~g~tg~- 143 (211)
T cd00429 69 ---PERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDE-VDLVLVMSVNPGFGGQ- 143 (211)
T ss_pred ---HHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhh-CCEEEEEEECCCCCCc-
Confidence 36789999999999999999988787888999999999999988888888888887554 5678887764 55553
Q ss_pred CCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 232 ASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..++...+.++++|+.+ ++|++++|||+ ++++.++.+.||||+||||++++.
T Consensus 144 -~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 144 -KFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred -ccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhCC
Confidence 45556667888888876 48999999998 699999999999999999999974
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-20 Score=167.31 Aligned_cols=183 Identities=19% Similarity=0.202 Sum_probs=144.9
Q ss_pred EEeCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 68 YITAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 68 yi~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
-.-+|+|=. +...++++++.++|+..++++ + ++.++++|+.+++|++.|
T Consensus 12 ~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~---------~--------------------~~~i~~i~~~~~~Pil~~ 62 (221)
T PRK01130 12 QALPGEPLHSPEIMAAMALAAVQGGAVGIRAN---------G--------------------VEDIKAIRAVVDVPIIGI 62 (221)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC---------C--------------------HHHHHHHHHhCCCCEEEE
Confidence 445899976 568999999999999999984 1 347788888889999999
Q ss_pred ec---Cc-chhccCHHHHHHHHHHcCCcEEEecCCCh------hhHHHHHHHHHH-cCCCeEEEeCCCChHHHHHHHHHh
Q 021527 146 TY---YN-PILKRGVDNFMSTVRDIGIRGLVVPDVPL------EETESLQKEAMK-NKIELVLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 146 ~Y---~n-~i~~~g~~~fi~~~~~aGadGviipDlp~------ee~~~~~~~~~~-~gi~~I~lisp~t~~eri~~i~~~ 214 (311)
+| +| +++.++..++++.++++|+| ++++|++. ++..++.+.+++ .++..+ .+.++.++++.. .
T Consensus 63 ~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi---~~v~t~ee~~~a--~ 136 (221)
T PRK01130 63 IKRDYPDSEVYITPTLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKEYPGQLLM---ADCSTLEEGLAA--Q 136 (221)
T ss_pred EecCCCCCCceECCCHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEE---EeCCCHHHHHHH--H
Confidence 98 67 67888888899999999999 77888764 677889999999 555433 444556776544 3
Q ss_pred CCceEEEEe-cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 215 SEGFVYLVS-SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 215 a~gfiY~vs-~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..|+.|+.. ..|.|+..........++++++++.+++||+++|||++++++.++++.|||||+|||+|++.
T Consensus 137 ~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 137 KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 467888854 45666654322333457899999988999999999999999999999999999999999984
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-19 Score=162.32 Aligned_cols=213 Identities=23% Similarity=0.336 Sum_probs=146.9
Q ss_pred CccEEEEE----eCCCCCh--------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCC--hHHHHHHHHHHHHcCCCHHHH
Q 021527 62 KVALIPYI----TAGDPDL--------STTAEALKLLDSCGSDIIELGVPYSDPLAD--GPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 62 ~~~li~yi----~~G~P~~--------~~~~e~~~~L~~~GaD~IElG~PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~ 127 (311)
+|.+|+.+ +||+|.+ +..++.++.|+++|+|.|.+.+-++-||.. +|.+.+++.+
T Consensus 2 ~KpiIGmvHL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~----------- 70 (254)
T PF03437_consen 2 EKPIIGMVHLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMAR----------- 70 (254)
T ss_pred CCCEEEEEcCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHH-----------
Confidence 57888877 8999985 468899999999999999998888777764 6666666655
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCc--------EEEecCCCh-----hhHHHHHHHHHHcCCC
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR--------GLVVPDVPL-----EETESLQKEAMKNKIE 194 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGad--------GviipDlp~-----ee~~~~~~~~~~~gi~ 194 (311)
++.++++++++|+.+...+|.- ..-+..+..+|+| |..+.|..+ .|..++++.+... +.
T Consensus 71 --i~~~v~~~~~~p~GVnvL~nd~-----~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ 142 (254)
T PF03437_consen 71 --IAREVRREVSVPVGVNVLRNDP-----KAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VK 142 (254)
T ss_pred --HHHHHHHhCCCCEEeeeecCCC-----HHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCC-eE
Confidence 7888898899999998888632 2344556666665 233334322 3456666555433 33
Q ss_pred eEEEe--------CCCChHHHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHH
Q 021527 195 LVLFT--------TPTTPTDRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEH 264 (311)
Q Consensus 195 ~I~li--------sp~t~~eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~ 264 (311)
...-+ .+.+.++..+...+. +++.+ +||..++.+++. +.++++|+.+++||++|.|++ +||
T Consensus 143 ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDavi-------VtG~~TG~~~~~-~~l~~vr~~~~~PVlvGSGvt-~~N 213 (254)
T PF03437_consen 143 ILADVHVKHSSPLATRDLEEAAKDAVERGGADAVI-------VTGKATGEPPDP-EKLKRVREAVPVPVLVGSGVT-PEN 213 (254)
T ss_pred EEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEE-------ECCcccCCCCCH-HHHHHHHhcCCCCEEEecCCC-HHH
Confidence 33222 222233444333232 23332 566666666654 569999999899999999996 899
Q ss_pred HHHHHHcCCcEEEEhhHhhchhhhcCCc--hhHHHHHHHHHHHHH
Q 021527 265 VQQVAGWGADGVIVGSAMVKLLGEAQSP--EEGLKELEKFAKSLK 307 (311)
Q Consensus 265 v~~v~~~GADGvIVGSaiv~~~~~~~~~--~~~~~~~~~~~~~l~ 307 (311)
+.++++. |||+||||.|.+- +.+ .-..+++++|++..+
T Consensus 214 i~~~l~~-ADG~IVGS~~K~~----G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 214 IAEYLSY-ADGAIVGSYFKKD----GKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred HHHHHHh-CCEEEEeeeeeeC----CEeCCcCCHHHHHHHHHHhh
Confidence 9999998 9999999999971 111 234678889988765
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=150.26 Aligned_cols=181 Identities=22% Similarity=0.197 Sum_probs=138.4
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNP 150 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~ 150 (311)
..|+.++..++++.|.++ ++++|+|.||. . ..| ++.++.+|++ .++|+++..+.++
T Consensus 8 d~~~~~~~~~~~~~l~~~-i~~ieig~~~~---------~-------~~g------~~~i~~i~~~~~~~~i~~~~~v~~ 64 (202)
T cd04726 8 DLLDLEEALELAKKVPDG-VDIIEAGTPLI---------K-------SEG------MEAVRALREAFPDKIIVADLKTAD 64 (202)
T ss_pred cCCCHHHHHHHHHHhhhc-CCEEEcCCHHH---------H-------HhC------HHHHHHHHHHCCCCEEEEEEEecc
Confidence 779999999999999999 99999998882 1 123 5678888876 5889988766553
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChh-hHHHHHHHHHHcCCCeEE-EeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLE-ETESLQKEAMKNKIELVL-FTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~e-e~~~~~~~~~~~gi~~I~-lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
.. +.|++.+.++|+|++++++.+.. ...++.+.++++|+..+. +.+|.|+.++.+ ... .+..|+.-..+.+
T Consensus 65 ~~----~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~--~~~d~v~~~~~~~ 137 (202)
T cd04726 65 AG----ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLK--LGVDIVILHRGID 137 (202)
T ss_pred cc----HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHH--CCCCEEEEcCccc
Confidence 32 35678999999999999987653 467788999999998776 479999888765 333 3444543222333
Q ss_pred CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+...+ .+...+.++++++..++|+++++||+ ++++.++.+.|||++++||+|++
T Consensus 138 ~~~~~-~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 138 AQAAG-GWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred ccccC-CCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhcC
Confidence 33222 22334678888876789999999997 99999999999999999999987
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=157.38 Aligned_cols=187 Identities=20% Similarity=0.223 Sum_probs=133.9
Q ss_pred EEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH--HHHHHHHHhhccCCCcEEE-E--ecCc-chhccCHHHHHHHHHHcC
Q 021527 94 IELGVPYSDPLADGPVIQAAATRSLARGTNFN--AILSMLKEVVPQMSCPIAL-F--TYYN-PILKRGVDNFMSTVRDIG 167 (311)
Q Consensus 94 IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~--~~~~~i~~ir~~~~iPiil-m--~Y~n-~i~~~g~~~fi~~~~~aG 167 (311)
+-...-..+|++|++.+++++++++++|.+.- ..++.++++|+.+++|++. + .|-+ .++......+++.+.++|
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aG 92 (219)
T cd04729 13 VSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAG 92 (219)
T ss_pred EEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcC
Confidence 44455567888889999888888888887654 4567888888878999864 2 2211 111111134889999999
Q ss_pred CcEEEecCCCh------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe-cCCccCCCCCCCchHHH
Q 021527 168 IRGLVVPDVPL------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS-SIGVTGARASISGHVQT 240 (311)
Q Consensus 168 adGviipDlp~------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs-~~G~TG~~~~~~~~~~~ 240 (311)
+|. ++.|.+. ++..++.+.++++| +..+++...+++++ ... ...|+.|+.. ..|.|+..........+
T Consensus 93 ad~-I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea-~~a--~~~G~d~i~~~~~g~t~~~~~~~~~~~~ 167 (219)
T cd04729 93 ADI-IALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEA-LNA--AKLGFDIIGTTLSGYTEETAKTEDPDFE 167 (219)
T ss_pred CCE-EEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHH-HHH--HHcCCCEEEccCccccccccCCCCCCHH
Confidence 995 5555432 36778888888888 55555566666554 332 3468888864 45666654322222347
Q ss_pred HHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 241 ~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+++++++.+++|++++|||++++++.++++.|||||+|||+|++.
T Consensus 168 ~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 168 LLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 899999988999999999999999999999999999999999984
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.7e-18 Score=152.84 Aligned_cols=197 Identities=16% Similarity=0.256 Sum_probs=151.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc--EEEEecCcchh
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP--IALFTYYNPIL 152 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP--iilm~Y~n~i~ 152 (311)
.....+.++.|+++|+|++|++ ++||.++..-+ .| .++++.+|+. +++| +.||..
T Consensus 11 ~~~l~~~i~~l~~~g~~~lH~D------vmDG~Fvpn~t-----fg------~~~i~~i~~~~~~~~~dvHLMv~----- 68 (220)
T PRK08883 11 FARLGEDVEKVLAAGADVVHFD------VMDNHYVPNLT-----FG------APICKALRDYGITAPIDVHLMVK----- 68 (220)
T ss_pred HHHHHHHHHHHHHcCCCEEEEe------cccCcccCccc-----cC------HHHHHHHHHhCCCCCEEEEeccC-----
Confidence 3677899999999999999998 99998876532 12 4578888876 5677 788873
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~ 232 (311)
.+++|++.++++|+|-+.++=-..+...++.+.++++|++..+.++|.||.+.++.+....+.+ .++|+.+.+|.+.
T Consensus 69 --~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~v-lvMtV~PGfgGq~ 145 (220)
T PRK08883 69 --PVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLI-LLMSVNPGFGGQS 145 (220)
T ss_pred --CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeE-EEEEecCCCCCce
Confidence 4678999999999999988722123466788999999999999999999999988887755554 4467777777765
Q ss_pred CCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 233 SISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 233 ~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
-++ ...+.++++|+.. ++|+.|.|||+ ++++.++.++|||++|+||++.+. .++.+.++++++.+
T Consensus 146 fi~-~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~----~d~~~~i~~l~~~~ 215 (220)
T PRK08883 146 FIP-HTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQ----PDYKAVIDEMRAEL 215 (220)
T ss_pred ecH-hHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCC----CCHHHHHHHHHHHH
Confidence 444 4456788888765 38999999998 899999999999999999999872 22344444444433
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=149.15 Aligned_cols=190 Identities=17% Similarity=0.216 Sum_probs=138.1
Q ss_pred CCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 61 GKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
++..+|.=+=.-.|+. ....+.++.++++|+++|++- .++.+-+ ..++.++.+
T Consensus 9 ~~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~---~~~~~~~------------------g~~~~~~~i 67 (217)
T cd00331 9 GGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVL---TEPKYFQ------------------GSLEDLRAV 67 (217)
T ss_pred CCceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEE---eCccccC------------------CCHHHHHHH
Confidence 4567777664434442 468999999999999999995 2322211 123577777
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
|+.+++||+++++.. . ..+++.+.++|+||+++ .|++.++..++.+.++..|++.+..+. + .+++++..
T Consensus 68 ~~~v~iPi~~~~~i~-----~-~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~--~-~~e~~~~~ 138 (217)
T cd00331 68 REAVSLPVLRKDFII-----D-PYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVH--D-EEELERAL 138 (217)
T ss_pred HHhcCCCEEECCeec-----C-HHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEEC--C-HHHHHHHH
Confidence 777899999876422 1 23899999999999995 578888888899999999999877664 3 45565554
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+ .|+.|+. .++.++.. ..+++ +.++++++. .++|++++|||++++|++++.++|||||+|||+|++..
T Consensus 139 ~--~g~~~i~-~t~~~~~~--~~~~~-~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~ 208 (217)
T cd00331 139 A--LGAKIIG-INNRDLKT--FEVDL-NTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAP 208 (217)
T ss_pred H--cCCCEEE-EeCCCccc--cCcCH-HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 4 3454442 11333332 23333 678888876 47899999999999999999999999999999999854
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-18 Score=152.51 Aligned_cols=153 Identities=22% Similarity=0.275 Sum_probs=118.5
Q ss_pred HHHHhhccCCCcEEEEecCcchhc-cCHHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcCCCeEEEeCCCCh
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILK-RGVDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNKIELVLFTTPTTP 204 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~-~g~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~gi~~I~lisp~t~ 204 (311)
.++.+++.+++|++...|...-+. +--+.|++.++++|+||++++| ++++|..++...++++|+..| ++.++
T Consensus 47 ~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I-~~v~~-- 123 (223)
T PRK04302 47 DIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESV-VCVNN-- 123 (223)
T ss_pred HHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEE-EEcCC--
Confidence 445555557899988866432111 2235689999999999999998 888999999999999999988 45554
Q ss_pred HHHHHHHHHhCCceEEEEec--CCcc-CCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 205 TDRMKAIVEASEGFVYLVSS--IGVT-GARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~--~G~T-G~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.++++.+.+...+|+|+.+. .|++ +.+...+..+.+.++.+|+.. ++||++||||++++++..+.+.|+|||+|||
T Consensus 124 ~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 124 PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLAS 203 (223)
T ss_pred HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEeh
Confidence 46777776677889999763 4432 322334556777888898864 7999999999999999999999999999999
Q ss_pred Hhhch
Q 021527 281 AMVKL 285 (311)
Q Consensus 281 aiv~~ 285 (311)
++++.
T Consensus 204 a~l~~ 208 (223)
T PRK04302 204 GVVKA 208 (223)
T ss_pred HHhCC
Confidence 99984
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-17 Score=147.09 Aligned_cols=215 Identities=23% Similarity=0.368 Sum_probs=146.6
Q ss_pred CccEEEEE----eCCCC----Ch----hhHHHHHHHHHHCCCCEEEEcCCCCCCCCC--hHHHHHHHHHHHHcCCCHHHH
Q 021527 62 KVALIPYI----TAGDP----DL----STTAEALKLLDSCGSDIIELGVPYSDPLAD--GPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 62 ~~~li~yi----~~G~P----~~----~~~~e~~~~L~~~GaD~IElG~PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~ 127 (311)
+|.+|+.+ .||+| ++ +..++.+++|+++|+|.|.+-+-|+-|+.- ||...+++.+
T Consensus 7 ~k~vIGvvHL~PLPGsp~~~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~----------- 75 (263)
T COG0434 7 KKPVIGVVHLLPLPGSPYDAGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAV----------- 75 (263)
T ss_pred CCceEEEEecCCCCCCccccCCHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHH-----------
Confidence 56888766 89999 22 568899999999999999997766666662 6666666654
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCc--------EEEecCCCh-----hhHHHHHHHHHHcCCC
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR--------GLVVPDVPL-----EETESLQKEAMKNKIE 194 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGad--------GviipDlp~-----ee~~~~~~~~~~~gi~ 194 (311)
++++++.+.++|+.+...+|.- ..-+..+...|++ |+.+.|-.+ .|..+++..+. .+++
T Consensus 76 --iv~~v~r~v~iPvGvNVLrNd~-----vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~-~~v~ 147 (263)
T COG0434 76 --IVREVVREVSIPVGVNVLRNDA-----VAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG-SRVK 147 (263)
T ss_pred --HHHHHHHhccccceeeeecccc-----HHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc-CCcE
Confidence 7889999999999999888731 2334456666666 223333222 35666776666 3454
Q ss_pred eEE---------EeCCCChHHHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHH
Q 021527 195 LVL---------FTTPTTPTDRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPE 263 (311)
Q Consensus 195 ~I~---------lisp~t~~eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e 263 (311)
... +..+ +-++-.+...+. +++.| .||.+++-+++. +.|+.+|+.+++|+++|.|++ +|
T Consensus 148 vlADv~VKHa~~l~~~-~~~~~v~dtver~~aDaVI-------~tG~~TG~~~d~-~el~~a~~~~~~pvlvGSGv~-~e 217 (263)
T COG0434 148 VLADVHVKHAVHLGNR-SLEEAVKDTVERGLADAVI-------VTGSRTGSPPDL-EELKLAKEAVDTPVLVGSGVN-PE 217 (263)
T ss_pred EEeecchhcccccCCc-CHHHHHHHHHHccCCCEEE-------EecccCCCCCCH-HHHHHHHhccCCCEEEecCCC-HH
Confidence 332 2222 223444442232 33333 455555555654 569999999999999999997 89
Q ss_pred HHHHHHHcCCcEEEEhhHhhchhhhcCCc-hhHHHHHHHHHHHHHhh
Q 021527 264 HVQQVAGWGADGVIVGSAMVKLLGEAQSP-EEGLKELEKFAKSLKSA 309 (311)
Q Consensus 264 ~v~~v~~~GADGvIVGSaiv~~~~~~~~~-~~~~~~~~~~~~~l~~~ 309 (311)
|+.+++++ |||+||||.|++-=. .+ +-.++++++|++..+..
T Consensus 218 N~~~~l~~-adG~IvgT~lK~~G~---~~n~VD~~Rv~~~v~~a~~~ 260 (263)
T COG0434 218 NIEELLKI-ADGVIVGTSLKKGGV---TWNPVDLERVRRFVEAARRL 260 (263)
T ss_pred HHHHHHHH-cCceEEEEEEccCCE---ecCccCHHHHHHHHHHHHHh
Confidence 99999999 999999999998321 11 33467788888777654
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.8e-17 Score=148.54 Aligned_cols=216 Identities=19% Similarity=0.283 Sum_probs=150.0
Q ss_pred ccEEEEE----eCCCCCh--------hhHHHHHHHHHHCCCCEEEEcCCCCCCC--CChHHHHHHHHHHHHcCCCHHHHH
Q 021527 63 VALIPYI----TAGDPDL--------STTAEALKLLDSCGSDIIELGVPYSDPL--ADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 63 ~~li~yi----~~G~P~~--------~~~~e~~~~L~~~GaD~IElG~PfsDP~--aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
|.+|+.+ .||+|.+ +..++.++.|+++|+|.|.+.+-|+-|+ .-+|.+.+++.+
T Consensus 2 kpvIGmvHl~pLPGsP~~~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~------------ 69 (257)
T TIGR00259 2 KPVIGMVHLLPLPGSPSFDDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAV------------ 69 (257)
T ss_pred CCEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHH------------
Confidence 4577766 7899985 4688899999999999999999999998 568888877765
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCc--------EEEecCCCh-----hhHHHHHHHHHHcCCCe
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR--------GLVVPDVPL-----EETESLQKEAMKNKIEL 195 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGad--------GviipDlp~-----ee~~~~~~~~~~~gi~~ 195 (311)
++.++++++++|+.+...+|.- ..-+..++.+|+| |..+.|-.+ .|..+|++.+. .++..
T Consensus 70 -i~~~v~~~~~~p~GvnvL~nd~-----~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~-~~v~i 142 (257)
T TIGR00259 70 -IAGQLKSDVSIPLGINVLRNDA-----VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG-SEVKI 142 (257)
T ss_pred -HHHHHHHhcCCCeeeeeecCCC-----HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC-CCcEE
Confidence 7888999999999998877622 3345556667766 334444422 45677777766 34544
Q ss_pred EEEeC-----C---CChHHHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHH
Q 021527 196 VLFTT-----P---TTPTDRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEH 264 (311)
Q Consensus 196 I~lis-----p---~t~~eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~ 264 (311)
..-+. | .+.++..+..... +++.+ +||..++.+.+. +.++++|+. .++|+++|+|++ ++|
T Consensus 143 ~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavi-------vtG~~TG~~~d~-~~l~~vr~~~~~~PvllggGvt-~eN 213 (257)
T TIGR00259 143 LADIVVKHAVHLGNRDLESIALDTVERGLADAVI-------LSGKTTGTEVDL-ELLKLAKETVKDTPVLAGSGVN-LEN 213 (257)
T ss_pred EeceeecccCcCCCCCHHHHHHHHHHhcCCCEEE-------ECcCCCCCCCCH-HHHHHHHhccCCCeEEEECCCC-HHH
Confidence 33221 2 2223333332222 23332 445444444443 568888874 479999999996 899
Q ss_pred HHHHHHcCCcEEEEhhHhhchhhhcCCc--hhHHHHHHHHHHHHHhhCC
Q 021527 265 VQQVAGWGADGVIVGSAMVKLLGEAQSP--EEGLKELEKFAKSLKSALP 311 (311)
Q Consensus 265 v~~v~~~GADGvIVGSaiv~~~~~~~~~--~~~~~~~~~~~~~l~~~~~ 311 (311)
+.++++. +||++|||.|.+ + +.+ ....+++++|++.++..++
T Consensus 214 v~e~l~~-adGviVgS~~K~---~-G~~~n~~D~~rV~~Fm~~v~~~~~ 257 (257)
T TIGR00259 214 VEELLSI-ADGVIVATTIKK---D-GVFNNFVDQARVSQFVEKVAHGLK 257 (257)
T ss_pred HHHHHhh-CCEEEECCCccc---C-CccCCCcCHHHHHHHHHHHHHhcC
Confidence 9999998 999999999984 2 212 2457889999999887653
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-15 Score=137.60 Aligned_cols=205 Identities=16% Similarity=0.245 Sum_probs=153.8
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc--
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP-- 141 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP-- 141 (311)
+.|=+.+.|+ ....+.++.|+++|+|++|++ ++||.++.+-+ .| .+.++.+|+. +++|
T Consensus 6 i~pSil~ad~--~~l~~~i~~l~~~g~d~lHiD------imDG~FVPN~t-----fg------~~~i~~lr~~~~~~~~d 66 (223)
T PRK08745 6 IAPSILSADF--ARLGEEVDNVLKAGADWVHFD------VMDNHYVPNLT-----IG------PMVCQALRKHGITAPID 66 (223)
T ss_pred EEeehhhcCH--HHHHHHHHHHHHcCCCEEEEe------cccCccCCCcc-----cC------HHHHHHHHhhCCCCCEE
Confidence 4444555544 678899999999999999998 99998876532 11 4588888877 5777
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+.||.. .+++|++.+.++|+|-+.++=-......+..+.++++|++.-+-+.|.|+.+.++.+... -..|.+
T Consensus 67 vHLMv~-------~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~-vD~Vlv 138 (223)
T PRK08745 67 VHLMVE-------PVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPE-LDLVLV 138 (223)
T ss_pred EEeccC-------CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhh-cCEEEE
Confidence 688873 467899999999999998872111235678899999999999999999999988877663 345566
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 296 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~ 296 (311)
+|+....|.+ .+.+...+.++++|+.. +..|.|.+||+ .+++.++.++|||.+|+||++.+. .++.+.+
T Consensus 139 MtV~PGf~GQ-~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~----~d~~~~~ 212 (223)
T PRK08745 139 MSVNPGFGGQ-AFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNA----PDYAQVI 212 (223)
T ss_pred EEECCCCCCc-cccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCC----CCHHHHH
Confidence 7776666655 35555667788877752 35699999997 799999999999999999999862 1244445
Q ss_pred HHHHHH
Q 021527 297 KELEKF 302 (311)
Q Consensus 297 ~~~~~~ 302 (311)
+++++.
T Consensus 213 ~~lr~~ 218 (223)
T PRK08745 213 AQMRAA 218 (223)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-15 Score=135.03 Aligned_cols=184 Identities=18% Similarity=0.291 Sum_probs=131.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcchh
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNPIL 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~i~ 152 (311)
|+..+.+.++.+.++|+|+|++. ..||....... .| .+.++.+|+..+.| +.+|.
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld------~~d~~f~~~~~-----~g------~~~~~~l~~~~~~~~~vhlmv------ 74 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVD------VMDGHFVPNLT-----IG------PPVVKALRKHTDAPLDCHLMV------ 74 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe------cccCCcCCccc-----cC------HHHHHHHHhcCCCcEEEEecc------
Confidence 44578889999999999999996 56664332110 00 15777777766666 33433
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCC--ChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhC-CceEEEEecCCccC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDV--PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEAS-EGFVYLVSSIGVTG 229 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDl--p~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a-~gfiY~vs~~G~TG 229 (311)
...+++++.+.++|+||++++.- ..+...+..+.++++|+..-..+.|.|+.+.++.+.+.. -.++-+++...+++
T Consensus 75 -~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~ 153 (229)
T PLN02334 75 -TNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFG 153 (229)
T ss_pred -CCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCC
Confidence 24578999999999999966643 233455667778888987777778888888877765541 23333345554333
Q ss_pred CCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 230 ARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. ...++...+.++++|+. .+.|+.+-+||+ ++++.++.++|||+++|||++.+
T Consensus 154 ~-~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~-~e~i~~l~~aGad~vvvgsai~~ 207 (229)
T PLN02334 154 G-QSFIPSMMDKVRALRKKYPELDIEVDGGVG-PSTIDKAAEAGANVIVAGSAVFG 207 (229)
T ss_pred c-cccCHHHHHHHHHHHHhCCCCcEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 2 23566667888999887 468999999995 89999999999999999999987
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=135.95 Aligned_cols=192 Identities=22% Similarity=0.327 Sum_probs=153.6
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--E
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--I 142 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--i 142 (311)
+.|=|.+.|. ..+.+.++.++++|+|+++++ ++||.++.+-+- | ...++.+|+.++.| +
T Consensus 6 iapSILsaD~--~~l~~el~~~~~agad~iH~D------VMDghFVPNiTf-----G------p~~v~~l~~~t~~p~Dv 66 (220)
T COG0036 6 IAPSILSADF--ARLGEELKALEAAGADLIHID------VMDGHFVPNITF-----G------PPVVKALRKITDLPLDV 66 (220)
T ss_pred eeeehhhCCH--hHHHHHHHHHHHcCCCEEEEe------ccCCCcCCCccc-----C------HHHHHHHhhcCCCceEE
Confidence 4444555443 778899999999999999998 999988765331 1 45788888877777 7
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+|.. .++++++.+.++|+|-+.+.=-..+...+..+.+|++|++.-..+.|.||.+-++.+.. .-.+|.++
T Consensus 67 HLMV~-------~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~-~vD~VllM 138 (220)
T COG0036 67 HLMVE-------NPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD-DVDLVLLM 138 (220)
T ss_pred EEecC-------CHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-hCCEEEEE
Confidence 88874 56899999999999999886222235678899999999999999999999998877755 34667788
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESST----KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
|++...|.+ .+-+++.+.|+++|+..+ .-+.|.+||+ .+++.++.++|||-+|.||++.+.
T Consensus 139 sVnPGfgGQ-~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF~~ 203 (220)
T COG0036 139 SVNPGFGGQ-KFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSALFGA 203 (220)
T ss_pred eECCCCccc-ccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEeCC
Confidence 888877776 455567788999998754 3589999997 699999999999999999999873
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-15 Score=135.59 Aligned_cols=156 Identities=14% Similarity=0.222 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEEecCcchhc---cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILK---RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF 198 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~---~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l 198 (311)
++.+++++.++++++..+.|+.+ |.++. ++.+++++.+.++|+|+|+++|.. ..++.+.++++++..+..
T Consensus 36 ~~~~~~~~~~~~i~~~~~~~~~v----~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~---~~~~~~~~~~~~i~~i~~ 108 (236)
T cd04730 36 LTPEALRAEIRKIRALTDKPFGV----NLLVPSSNPDFEALLEVALEEGVPVVSFSFGP---PAEVVERLKAAGIKVIPT 108 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEE----eEecCCCCcCHHHHHHHHHhCCCCEEEEcCCC---CHHHHHHHHHcCCEEEEe
Confidence 35667778888888766567654 33333 378899999999999999999873 345677778888877665
Q ss_pred eCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 199 TTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 199 isp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
+.+ .++++.+.+...+++++.+. +.+|.....+....++++++++.+++|++++|||++++|+.+++..|||||+|
T Consensus 109 v~~---~~~~~~~~~~gad~i~~~~~-~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 109 VTS---VEEARKAEAAGADALVAQGA-EAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred CCC---HHHHHHHHHcCCCEEEEeCc-CCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 532 35566666655566666543 33343322223456789999998899999999999999999999999999999
Q ss_pred hhHhhchhhh
Q 021527 279 GSAMVKLLGE 288 (311)
Q Consensus 279 GSaiv~~~~~ 288 (311)
||++++..+.
T Consensus 185 gS~l~~~~e~ 194 (236)
T cd04730 185 GTRFLATEES 194 (236)
T ss_pred chhhhcCccc
Confidence 9999998864
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-15 Score=133.57 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=145.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcchh
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNPIL 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~i~ 152 (311)
|+....+.++.|.++|+|.+|++ ++||..+..-+ .| .+.++.+|+.++.| +.||..
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiD------vMDG~FVPN~t-----fG------~~~i~~l~~~t~~~~DvHLMv~----- 68 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLD------IEDTSFINNIT-----FG------MKTIQAVAQQTRHPLSFHLMVS----- 68 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe------ccCCCcCCccc-----cC------HHHHHHHHhcCCCCeEEEeccC-----
Confidence 34678899999999999999998 89997776532 11 46888888877777 688874
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~ 232 (311)
.+++|++.+.++|+|-+.++=-..+...+..+.++++|++.-+-+.|.||.+-++.+... -..|.++|+....|.+
T Consensus 69 --~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~-vD~VlvMsV~PGf~GQ- 144 (210)
T PRK08005 69 --SPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQ-LDALMIMTSEPDGRGQ- 144 (210)
T ss_pred --CHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHh-cCEEEEEEecCCCccc-
Confidence 468899999999999998872111235678899999999999999999999888777553 3556667777666655
Q ss_pred CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 233 SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 233 ~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+...+.++++|+.. ...+.|.+||+ .+++.++.++|||.+|+||++.+
T Consensus 145 ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~ 196 (210)
T PRK08005 145 QFIAAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAAAGAQHLVIGRALFT 196 (210)
T ss_pred eecHHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhC
Confidence 35566677899888864 34799999997 79999999999999999999986
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=133.67 Aligned_cols=172 Identities=22% Similarity=0.275 Sum_probs=121.9
Q ss_pred eCCCCCh-hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 70 TAGDPDL-STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~-~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+.=||+. +...++++.+.++|+|.|++| |. -|++.+++.+.++.+|+.+++|++++-.
T Consensus 3 ~~iDP~k~e~~~~ia~~v~~~gtDaI~VG---------GS-----------~gvt~~~~~~~v~~ik~~~~lPvilfp~- 61 (205)
T TIGR01769 3 TLIDPEKSDEIEKIAKNAKDAGTDAIMVG---------GS-----------LGIVESNLDQTVKKIKKITNLPVILFPG- 61 (205)
T ss_pred cccCCCcHHHHHHHHHHHHhcCCCEEEEc---------Cc-----------CCCCHHHHHHHHHHHHhhcCCCEEEECC-
Confidence 4447876 455566779999999999998 41 2467778888999999989999999843
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCCh--------hhHHHHHHHHHHcCCCeEEE----e--------------CCC
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPL--------EETESLQKEAMKNKIELVLF----T--------------TPT 202 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~--------ee~~~~~~~~~~~gi~~I~l----i--------------sp~ 202 (311)
| .+ ...-++|++++|-+-. ....+....++++|++.++- + .|.
T Consensus 62 ~------~~-----~i~~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~ 130 (205)
T TIGR01769 62 N------VN-----GLSRYADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPY 130 (205)
T ss_pred C------cc-----ccCcCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCC
Confidence 1 11 1113699999975443 22334444558889877752 1 133
Q ss_pred ChHHHHHHHHHhC----CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 203 TPTDRMKAIVEAS----EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 203 t~~eri~~i~~~a----~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.+.+....++..+ -.++|++...|. ....+ .++++++|+.+++|+++||||+++|+++++++.|||+|||
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa---~~~v~---~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGA---SYPVN---PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCC---CCCCC---HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 4445554444432 357888765543 21223 4789999999999999999999999999999999999999
Q ss_pred h
Q 021527 279 G 279 (311)
Q Consensus 279 G 279 (311)
|
T Consensus 205 G 205 (205)
T TIGR01769 205 G 205 (205)
T ss_pred C
Confidence 8
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=133.29 Aligned_cols=181 Identities=23% Similarity=0.370 Sum_probs=124.1
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
+++..+.-| ||+.....+.++.+.+.|.|.|.+| |. -|++.+++.+.++.+|+ +++
T Consensus 6 ~~~~h~~li---DP~k~~~~~~~~~~~~~gtdai~vG---------GS-----------~~vt~~~~~~~v~~ik~-~~l 61 (232)
T PRK04169 6 KGWLHVTLL---DPDKPLPDEALEAICESGTDAIIVG---------GS-----------DGVTEENVDELVKAIKE-YDL 61 (232)
T ss_pred cCceEEEEE---CCCCCCCHHHHHHHHhcCCCEEEEc---------CC-----------CccchHHHHHHHHHHhc-CCC
Confidence 344455555 8887777777799999999999998 42 14566677889999998 899
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh--------hhHHHHHHHHHHcCCCeEEE----eC--------
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--------EETESLQKEAMKNKIELVLF----TT-------- 200 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--------ee~~~~~~~~~~~gi~~I~l----is-------- 200 (311)
|++++-+ | .+. ..-++|++++|-+-. ....+.....++.|++.++- +.
T Consensus 62 Pvilfp~-~------~~~-----i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~ 129 (232)
T PRK04169 62 PVILFPG-N------IEG-----ISPGADAYLFPSVLNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVV 129 (232)
T ss_pred CEEEeCC-C------ccc-----cCcCCCEEEEEEEecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeee
Confidence 9999853 1 111 112599999975432 33444555557778876651 11
Q ss_pred ------CCChHHHHHHHHHh-----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCC-cEEEeeCCCCHHHHHHH
Q 021527 201 ------PTTPTDRMKAIVEA-----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAVGFGISKPEHVQQV 268 (311)
Q Consensus 201 ------p~t~~eri~~i~~~-----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~-Pv~vGfGIst~e~v~~v 268 (311)
|.+.++-. ..... ...++|+....+ +|. ..+ .++++++|+.++. |+++||||+++|+++++
T Consensus 130 ~~~~~~~~~~~~~~-~~~~lA~~~~g~~~vYle~gs~-~g~--~~~---~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~ 202 (232)
T PRK04169 130 GTAAPIPLDKPDIA-AYAALAAEYLGMPIVYLEYGGG-AGD--PVP---PEMVKAVKKALDITPLIYGGGIRSPEQAREL 202 (232)
T ss_pred eccccCCCChHHHH-HHHHHHHHHcCCCeEEEECCCC-CCC--CCC---HHHHHHHHHhcCCCcEEEECCCCCHHHHHHH
Confidence 22323322 22222 234678874322 222 222 4689999998887 99999999999999999
Q ss_pred HHcCCcEEEEhhHhhc
Q 021527 269 AGWGADGVIVGSAMVK 284 (311)
Q Consensus 269 ~~~GADGvIVGSaiv~ 284 (311)
+..|||+|||||++++
T Consensus 203 l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 203 MAAGADTIVVGNIIEE 218 (232)
T ss_pred HHhCCCEEEEChHHhh
Confidence 9999999999999996
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=128.47 Aligned_cols=169 Identities=21% Similarity=0.255 Sum_probs=118.5
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe---cCc-chhccCH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT---YYN-PILKRGV 156 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~---Y~n-~i~~~g~ 156 (311)
..+++...+|+-.|=.. | .+.|+.+|+.+++||+-.. |-+ ++|.+..
T Consensus 3 ~mA~Aa~~gGA~giR~~---------~--------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT 53 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRAN---------G--------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPT 53 (192)
T ss_dssp HHHHHHHHCT-SEEEEE---------S--------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-S
T ss_pred HHHHHHHHCCceEEEcC---------C--------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCC
Confidence 56677778888888775 3 3578889999999998875 443 7899999
Q ss_pred HHHHHHHHHcCCcEEEecCCC----hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVP----LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGAR 231 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp----~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~ 231 (311)
.+-++.+.++|+|-+-+ |.. ++...++.+.+++.+ ..++..-.|- |..... ..-||.++. +..|.|+..
T Consensus 54 ~~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADist~-ee~~~A--~~~G~D~I~TTLsGYT~~t 127 (192)
T PF04131_consen 54 LKEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADISTL-EEAINA--AELGFDIIGTTLSGYTPYT 127 (192)
T ss_dssp HHHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE-SSH-HHHHHH--HHTT-SEEE-TTTTSSTTS
T ss_pred HHHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeecCCH-HHHHHH--HHcCCCEEEcccccCCCCC
Confidence 99999999999998755 221 256788999999988 4444444444 443332 346888885 688999987
Q ss_pred CCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+ .....++++++++. ++||++.++|+|||+++++++.||+.|||||||.+..
T Consensus 128 ~~-~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~ 180 (192)
T PF04131_consen 128 KG-DGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQ 180 (192)
T ss_dssp TT-SSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HH
T ss_pred CC-CCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHH
Confidence 77 54556899999886 8999999999999999999999999999999999965
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-14 Score=130.63 Aligned_cols=194 Identities=15% Similarity=0.126 Sum_probs=148.2
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
+-.+.|=+.+.|+ ....+.++.|.++|+|++|++ ++||.++.+-+ .| .+.++.+|+...+-
T Consensus 12 ~~~I~pSil~ad~--~~l~~el~~l~~~g~d~lHiD------VMDG~FVPNit-----fG------p~~i~~i~~~~~~D 72 (228)
T PRK08091 12 QQPISVGILASNW--LKFNETLTTLSENQLRLLHFD------IADGQFSPFFT-----VG------AIAIKQFPTHCFKD 72 (228)
T ss_pred CCeEEeehhhcCH--HHHHHHHHHHHHCCCCEEEEe------ccCCCcCCccc-----cC------HHHHHHhCCCCCEE
Confidence 3345566666655 788899999999999999998 99998876532 12 45777887533334
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCC--CeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI--ELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi--~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+.+|.. .+++|++.+.++|+|-+.++==......+..+.++++|+ +.-+-+.|.||.+.++.+... -..|
T Consensus 73 vHLMv~-------~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-vD~V 144 (228)
T PRK08091 73 VHLMVR-------DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-IDLI 144 (228)
T ss_pred EEeccC-------CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-cCEE
Confidence 788874 468899999999999998871111235677889999998 888889999999998877664 3556
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.++|+....|.+. +.+...+.++++|+.. +.-|.|.+||+ .++++++.++|||.+|+||++.+
T Consensus 145 LiMtV~PGfgGQ~-f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF~ 212 (228)
T PRK08091 145 QILTLDPRTGTKA-PSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALFS 212 (228)
T ss_pred EEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhhC
Confidence 6677777666653 4555667788777642 46699999997 79999999999999999999986
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=143.53 Aligned_cols=185 Identities=21% Similarity=0.289 Sum_probs=135.0
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe-c
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT-Y 147 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~-Y 147 (311)
+-....++++..+.++.+.++|+|+||+|.|. +. ...++.++++++....+.++.- -
T Consensus 8 ~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~---------~~-------------~~~~~~i~~l~~~~~~~~ii~D~k 65 (430)
T PRK07028 8 VALDLLELDRAVEIAKEAVAGGADWIEAGTPL---------IK-------------SEGMNAIRTLRKNFPDHTIVADMK 65 (430)
T ss_pred EEeccCCHHHHHHHHHHHHhcCCcEEEeCCHH---------HH-------------HhhHHHHHHHHHHCCCCEEEEEee
Confidence 34466778999999999999999999998432 11 1124577777776555555421 1
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChh-hHHHHHHHHHHcCCCeEE-EeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE-ETESLQKEAMKNKIELVL-FTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~e-e~~~~~~~~~~~gi~~I~-lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
... .| ..+++.+.++|+|++++++.+.+ ...++.+.++++|++.++ +++|.++.++++.+.+ .|..|+....
T Consensus 66 l~d---~g-~~~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~p 139 (430)
T PRK07028 66 TMD---TG-AIEVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHV 139 (430)
T ss_pred ecc---ch-HHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEe
Confidence 110 12 35889999999999999876543 345788889999998877 5787777787766544 4566664444
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 226 GVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|.++.. ..+...+.++++++.+++||++.+||+ ++++.++++.||||+++||+|++
T Consensus 140 g~~~~~--~~~~~~~~l~~l~~~~~iPI~a~GGI~-~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 140 GIDQQM--LGKDPLELLKEVSEEVSIPIAVAGGLD-AETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred ccchhh--cCCChHHHHHHHHhhCCCcEEEECCCC-HHHHHHHHHcCCCEEEEChHHcC
Confidence 554432 223345789999888889999999995 79999999999999999999997
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-14 Score=129.34 Aligned_cols=208 Identities=15% Similarity=0.214 Sum_probs=153.0
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--E
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--I 142 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--i 142 (311)
+.|=|.+.|+ ....+.++.+.+ |+|++|++ ++||.++..-+ +. .+.++.+|+.+++| +
T Consensus 5 I~pSil~ad~--~~l~~el~~l~~-g~d~lH~D------iMDG~FVPN~t-------fg----~~~i~~ir~~t~~~~Dv 64 (229)
T PRK09722 5 ISPSLMCMDL--LKFKEQIEFLNS-KADYFHID------IMDGHFVPNLT-------LS----PFFVSQVKKLASKPLDV 64 (229)
T ss_pred EEeehhhcCH--HHHHHHHHHHHh-CCCEEEEe------cccCccCCCcc-------cC----HHHHHHHHhcCCCCeEE
Confidence 4444444444 677788889888 89999998 89998776432 11 45888888777777 6
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
.||.. .+++|++.+.++|+|-+.++ ........+..+.++++|++.-+-+.|.|+.+.++.+... -..|.+
T Consensus 65 HLMv~-------~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~-vD~VLv 136 (229)
T PRK09722 65 HLMVT-------DPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHL-LDKITV 136 (229)
T ss_pred EEEec-------CHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHh-cCEEEE
Confidence 88874 46789999999999999887 2111235568899999999999999999999988877664 355666
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh-HhhchhhhcCCchhH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGS-AMVKLLGEAQSPEEG 295 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS-aiv~~~~~~~~~~~~ 295 (311)
+|+....|.+ .+.+...+.++++|+.. +.-+.|.+||+ .+++.++.++|||.+|+|| ++.+.- .+..+.
T Consensus 137 MsV~PGf~GQ-~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~~---~d~~~~ 211 (229)
T PRK09722 137 MTVDPGFAGQ-PFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNLD---EDIDEA 211 (229)
T ss_pred EEEcCCCcch-hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCCC---CCHHHH
Confidence 7776655554 45566677888887642 35699999997 7999999999999999995 477521 123455
Q ss_pred HHHHHHHHHH
Q 021527 296 LKELEKFAKS 305 (311)
Q Consensus 296 ~~~~~~~~~~ 305 (311)
++.+++.+++
T Consensus 212 i~~l~~~~~~ 221 (229)
T PRK09722 212 WDIMTAQIEA 221 (229)
T ss_pred HHHHHHHHHH
Confidence 6666655443
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-14 Score=129.90 Aligned_cols=178 Identities=23% Similarity=0.305 Sum_probs=123.7
Q ss_pred EEeCCCCChh---hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE
Q 021527 68 YITAGDPDLS---TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL 144 (311)
Q Consensus 68 yi~~G~P~~~---~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil 144 (311)
|++.=||+.. ...+.++++.++|.|.|.+| |. -|++.+++.+.++.+|+ ..+|+++
T Consensus 2 h~~liDPdK~~~~~~~~~~~~~~~~gtdai~vG---------GS-----------~~vt~~~~~~~v~~ik~-~~lPvil 60 (223)
T TIGR01768 2 HFTLIDPDKTNPSEADEIAKAAAESGTDAILIG---------GS-----------QGVTYEKTDTLIEALRR-YGLPIIL 60 (223)
T ss_pred ceeeECCCCCCccccHHHHHHHHhcCCCEEEEc---------CC-----------CcccHHHHHHHHHHHhc-cCCCEEE
Confidence 3444588875 78899999999999999998 41 24666777888899986 4499999
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEecCCCh--------hhHHHHHHHHHHcCCCeEEE----eC------------
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--------EETESLQKEAMKNKIELVLF----TT------------ 200 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--------ee~~~~~~~~~~~gi~~I~l----is------------ 200 (311)
+-. | .+ ...-++|++++|-+-. ....+.....++.+++.++- +.
T Consensus 61 fp~-~------~~-----~i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~ 128 (223)
T TIGR01768 61 FPS-N------PT-----NVSRDADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAK 128 (223)
T ss_pred eCC-C------cc-----ccCcCCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeeccccc
Confidence 852 2 11 1113699999975432 33445556667777776651 11
Q ss_pred --CCChHHHHHHHHHh-----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcC
Q 021527 201 --PTTPTDRMKAIVEA-----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWG 272 (311)
Q Consensus 201 --p~t~~eri~~i~~~-----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~G 272 (311)
|.+.++-. ..... ...++|+....| .| ...+ .+.++++|+.+ ++|+++||||+++|++++++++|
T Consensus 129 ~~p~~~~~~a-a~~~lA~~~~g~~~vYlE~gs~-~g--~~v~---~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG 201 (223)
T TIGR01768 129 PIPYDKEDLA-AYAAMAEEMLGMPIIYLEAGSG-AP--EPVP---PELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG 201 (223)
T ss_pred ccCCCcHHHH-HHHHHHHHHcCCcEEEEEecCC-CC--CCcC---HHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC
Confidence 33333332 22222 345789874322 22 2233 36799999988 89999999999999999999999
Q ss_pred CcEEEEhhHhhch
Q 021527 273 ADGVIVGSAMVKL 285 (311)
Q Consensus 273 ADGvIVGSaiv~~ 285 (311)
||+|||||++++-
T Consensus 202 AD~VVVGs~~~~d 214 (223)
T TIGR01768 202 ADTIVTGNVIEED 214 (223)
T ss_pred CCEEEECcHHhhC
Confidence 9999999999973
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-14 Score=127.48 Aligned_cols=181 Identities=24% Similarity=0.386 Sum_probs=111.7
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
.|+.++.-| ||+....-+.++.+.+.|.|.|.+| |.. .+.+++++.+.++++ +++
T Consensus 6 ~~~~h~~li---DPdK~~~~~~~~~~~~~gtDai~VG---------GS~----------~~~~~d~vv~~ik~~---~~l 60 (230)
T PF01884_consen 6 WRKLHATLI---DPDKPNPEEALEAACESGTDAIIVG---------GSD----------TGVTLDNVVALIKRV---TDL 60 (230)
T ss_dssp ----EEEEE----TTSS-HHHHHHHHHCTT-SEEEEE----------ST----------HCHHHHHHHHHHHHH---SSS
T ss_pred cccceEEEE---CCCCCCcHHHHHHHHhcCCCEEEEC---------CCC----------CccchHHHHHHHHhc---CCC
Confidence 355455555 8888777788888899999999998 422 134456666666555 899
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC--------CChhhHHHHHHHHHHcCCCeEEE----eC--------
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD--------VPLEETESLQKEAMKNKIELVLF----TT-------- 200 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD--------lp~ee~~~~~~~~~~~gi~~I~l----is-------- 200 (311)
|++++-.-. .... -++|++++|- +-.....+.....++.+++.++. +.
T Consensus 61 PvilfPg~~-------~~vs-----~~aDail~~svlNs~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v 128 (230)
T PF01884_consen 61 PVILFPGSP-------SQVS-----PGADAILFPSVLNSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARV 128 (230)
T ss_dssp -EEEETSTC-------CG-------TTSSEEEEEEETTBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHH
T ss_pred CEEEeCCCh-------hhcC-----cCCCEEEEEEEecCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEe
Confidence 999985321 1111 3699999963 33455566667778888888863 22
Q ss_pred ------CCChHHHHHHHHHh-----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH
Q 021527 201 ------PTTPTDRMKAIVEA-----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA 269 (311)
Q Consensus 201 ------p~t~~eri~~i~~~-----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~ 269 (311)
|...++.. ..... ...++|+....|..| ..+ .+.++.+|+..+.|++||+||+|+|+++++.
T Consensus 129 ~~a~pi~~~~~~ia-a~~alA~~~~g~~~iYLEaGSGa~~---~v~---~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~ 201 (230)
T PF01884_consen 129 TGARPIPLDKPEIA-AAAALAAEYLGMPIIYLEAGSGAYG---PVP---EEVIAAVKKLSDIPLIVGGGIRSPEQAREMA 201 (230)
T ss_dssp TTB-----SHHHHH-HHHHHHHHHTT-SEEEEE--TTSSS----HH---HHHHHHHHHSSSSEEEEESS--SHHHHHHHH
T ss_pred ecceecCCCcHHHH-HHHHHHHHHhCCCEEEEEeCCCCCC---Ccc---HHHHHHHHhcCCccEEEeCCcCCHHHHHHHH
Confidence 22222222 22221 346799986444322 222 3445555666799999999999999999999
Q ss_pred HcCCcEEEEhhHhhch
Q 021527 270 GWGADGVIVGSAMVKL 285 (311)
Q Consensus 270 ~~GADGvIVGSaiv~~ 285 (311)
++|||.||||++|.+-
T Consensus 202 ~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 202 EAGADTIVVGNAIEED 217 (230)
T ss_dssp CTTSSEEEESCHHHHH
T ss_pred HCCCCEEEECCEEEEc
Confidence 9999999999999973
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.6e-14 Score=128.34 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=145.9
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI 142 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi 142 (311)
-.+.|=+.+.|+ ....+.++.|+++|+|++|++ ++||.++..-+ .| .+.++.+|+....-+
T Consensus 20 ~~IspSil~aD~--~~L~~el~~l~~~g~d~lHiD------VMDG~FVPNit-----fG------p~~i~~i~~~~p~Dv 80 (254)
T PRK14057 20 YPLSVGILAGQW--IALHRYLQQLEALNQPLLHLD------LMDGQFCPQFT-----VG------PWAVGQLPQTFIKDV 80 (254)
T ss_pred CceEeehhhcCH--HHHHHHHHHHHHCCCCEEEEe------ccCCccCCccc-----cC------HHHHHHhccCCCeeE
Confidence 345555555544 788899999999999999998 99997776532 12 357777776332337
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCC---------CeEEEeCCCChHHHHHHHHH
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI---------ELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi---------~~I~lisp~t~~eri~~i~~ 213 (311)
.+|.. .+++|++.+.++|+|-+.++==......+..+.++++|+ ..-+-+.|.||.+.++.+..
T Consensus 81 HLMV~-------~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~ 153 (254)
T PRK14057 81 HLMVA-------DQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS 153 (254)
T ss_pred EeeeC-------CHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH
Confidence 88875 468899999999999998872111235677888999997 36677899999998887766
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. -..|.++|+....|.+. +.+...+.|+++|+.. ++-|.|.+||+ .+++.++.++|||.+|+||++.+
T Consensus 154 ~-vD~VLvMtV~PGfgGQ~-Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~GSalF~ 226 (254)
T PRK14057 154 D-VEVIQLLAVNPGYGSKM-RSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSGSALFR 226 (254)
T ss_pred h-CCEEEEEEECCCCCchh-ccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChHhhC
Confidence 4 45566778777666653 5555667788777642 36699999997 79999999999999999999986
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-14 Score=127.66 Aligned_cols=199 Identities=15% Similarity=0.259 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g 155 (311)
....+.++.|++.|+|.+|++ ++||.++.+.+ . ..+.++++|+.. ++|+-+-..-+ .
T Consensus 19 ~~l~~~~~~l~~~~~~~~H~D------imDg~fvpn~~-----~------G~~~v~~lr~~~~~~~lDvHLm~~-----~ 76 (228)
T PTZ00170 19 SKLADEAQDVLSGGADWLHVD------VMDGHFVPNLS-----F------GPPVVKSLRKHLPNTFLDCHLMVS-----N 76 (228)
T ss_pred HHHHHHHHHHHHcCCCEEEEe------cccCccCCCcC-----c------CHHHHHHHHhcCCCCCEEEEECCC-----C
Confidence 678899999999999999998 89997765421 1 256888888765 77754433322 3
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhC-CceEEEEecC-CccCCCC
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEAS-EGFVYLVSSI-GVTGARA 232 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a-~gfiY~vs~~-G~TG~~~ 232 (311)
.+++++.+.++|+|-+.++=-...+ ..+..+.++++|...-.-+.|.|+.+.++.+.+.. ...|-+++.. |..|.
T Consensus 77 p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq-- 154 (228)
T PTZ00170 77 PEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQ-- 154 (228)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCCCc--
Confidence 5789999999999999887332233 66788889999988777788999989887775211 1222233433 33333
Q ss_pred CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHH
Q 021527 233 SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 233 ~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
...+...+.++++|+.. +..+.|.+||+ ++++.++.++|||.+||||++.+. .++.+.++++++.++
T Consensus 155 ~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a----~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 155 SFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKA----KDRKQAIELLRESVQ 222 (228)
T ss_pred EecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCC----CCHHHHHHHHHHHHH
Confidence 23445566788888864 46799999997 799999999999999999999862 235555555554443
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-13 Score=117.91 Aligned_cols=193 Identities=19% Similarity=0.210 Sum_probs=137.9
Q ss_pred eCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe-
Q 021527 70 TAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT- 146 (311)
Q Consensus 70 ~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~- 146 (311)
++|.|-. +.....+++..++|+-.|-+. | .+-++.+|+.+++||+-..
T Consensus 24 l~~~pl~~~~iv~~mA~Aa~~gGAvgiR~~---------g--------------------v~dIkai~~~v~vPIIGIiK 74 (229)
T COG3010 24 LPGEPLDSPEIVAAMALAAEQGGAVGIRIE---------G--------------------VEDIKAIRAVVDVPIIGIIK 74 (229)
T ss_pred CCCCCCcchhHHHHHHHHHHhCCcceEeec---------c--------------------hhhHHHHHhhCCCCeEEEEe
Confidence 6666654 345556666677777666663 2 4578889999999988775
Q ss_pred --cCc-chhccCHHHHHHHHHHcCCcEEEecCCCh-----hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 147 --YYN-PILKRGVDNFMSTVRDIGIRGLVVPDVPL-----EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 147 --Y~n-~i~~~g~~~fi~~~~~aGadGviipDlp~-----ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
|-| +++.+.+-+-++.+.++|++-+-+ |... +...++....+..| ...+....|.+|- +..+..||
T Consensus 75 rd~~~s~v~ITptlkeVd~L~~~Ga~IIA~-DaT~R~RP~~~~~~~i~~~k~~~--~l~MAD~St~ee~---l~a~~~G~ 148 (229)
T COG3010 75 RDYPDSPVRITPTLKEVDALAEAGADIIAF-DATDRPRPDGDLEELIARIKYPG--QLAMADCSTFEEG---LNAHKLGF 148 (229)
T ss_pred cCCCCCCceecccHHHHHHHHHCCCcEEEe-ecccCCCCcchHHHHHHHhhcCC--cEEEeccCCHHHH---HHHHHcCC
Confidence 544 688888899999999999997544 4332 24555665544443 3444444444444 33557899
Q ss_pred EEEE-ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHH
Q 021527 219 VYLV-SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 297 (311)
Q Consensus 219 iY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~ 297 (311)
.++. +..|.|+...........+++++.+ .+.+|++.+.++||++++++.++||++|+|||||.|.-+
T Consensus 149 D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~---------- 217 (229)
T COG3010 149 DIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEE---------- 217 (229)
T ss_pred cEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHH----------
Confidence 9985 5889999544433344578999887 789999999999999999999999999999999999532
Q ss_pred HHHHHHHHHHh
Q 021527 298 ELEKFAKSLKS 308 (311)
Q Consensus 298 ~~~~~~~~l~~ 308 (311)
-...|++.+++
T Consensus 218 It~~F~~~ik~ 228 (229)
T COG3010 218 ITQWFVDAIKS 228 (229)
T ss_pred HHHHHHHHHhc
Confidence 23566666654
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-13 Score=123.20 Aligned_cols=177 Identities=22% Similarity=0.299 Sum_probs=124.9
Q ss_pred EEeCCCCCh-hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 68 YITAGDPDL-STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 68 yi~~G~P~~-~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
|++.=||+. +...++++.+.++|.|.|.+| |. -|++.+++.+.+++||+++++|++++.
T Consensus 18 H~tliDP~k~~~~~ei~~~~~~~GTDaImIG---------GS-----------~gvt~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 18 HLTLIDPDKTEEADEIAEAAAEAGTDAIMIG---------GS-----------DGVTEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred EEEEeCcccccccHHHHHHHHHcCCCEEEEC---------Cc-----------ccccHHHHHHHHHHHHhhcCCCEEEec
Confidence 677779999 899999999999999999998 41 257778889999999999999999986
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--------hhHHHHHHHHHHcCCCeEEE----eC--------------
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--------EETESLQKEAMKNKIELVLF----TT-------------- 200 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--------ee~~~~~~~~~~~gi~~I~l----is-------------- 200 (311)
+- .+...+ ++|++.+|-+.. ....+-.....+++++.++. +.
T Consensus 78 ~~-------~~~is~-----~aDavff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~i 145 (240)
T COG1646 78 GS-------PSGISP-----YADAVFFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPI 145 (240)
T ss_pred CC-------hhccCc-----cCCeEEEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccC
Confidence 42 111111 689998875443 22334455566677776642 22
Q ss_pred CCChHHHHHHHHHh-----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcE
Q 021527 201 PTTPTDRMKAIVEA-----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADG 275 (311)
Q Consensus 201 p~t~~eri~~i~~~-----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADG 275 (311)
|.+.++- ...... ...++|+....| .| .| ...+.++++++.+ |+++|+||+++|+++++.++|||.
T Consensus 146 p~~~~~i-aa~y~la~~~~g~~~~YlEagsg-a~----~P-v~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~agAD~ 216 (240)
T COG1646 146 PLDKEDI-AAYYALAEKYLGMPVVYLEAGSG-AG----DP-VPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAGADT 216 (240)
T ss_pred CCCcHHH-HHHHHHHHHHhCCeEEEEEecCC-CC----CC-cCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcCCCE
Confidence 3333332 222232 235688875322 22 12 2236678777655 999999999999999999999999
Q ss_pred EEEhhHhhch
Q 021527 276 VIVGSAMVKL 285 (311)
Q Consensus 276 vIVGSaiv~~ 285 (311)
+|+|+.+.+-
T Consensus 217 IVtG~iiee~ 226 (240)
T COG1646 217 IVTGTIIEED 226 (240)
T ss_pred EEECceeecC
Confidence 9999998873
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-15 Score=133.95 Aligned_cols=182 Identities=19% Similarity=0.310 Sum_probs=133.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcchhc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNPILK 153 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~i~~ 153 (311)
.....+.++.|+++|+|.+|++ ++||..+...+ +. .+.++.+|+.+++| +.+|+.
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiD------iMDg~fvpn~~-------~g----~~~i~~i~~~~~~~~DvHLMv~------ 67 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHID------IMDGHFVPNLT-------FG----PDIIKAIRKITDLPLDVHLMVE------ 67 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE------EEBSSSSSSB--------B-----HHHHHHHHTTSSSEEEEEEESS------
T ss_pred HHHHHHHHHHHHHcCCCEEEEe------ecccccCCccc-------CC----HHHHHHHhhcCCCcEEEEeeec------
Confidence 3678899999999999999998 88886654321 11 46888888888788 688764
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS 233 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~ 233 (311)
.+++|++.++++|+|-+.++=-..+...++.+.++++|++.-+.+.|.|+.+.++.+.. .-.+|.++|+....|.+ .
T Consensus 68 -~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV~PG~~Gq-~ 144 (201)
T PF00834_consen 68 -NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLD-QVDMVLVMSVEPGFGGQ-K 144 (201)
T ss_dssp -SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS-TTTSSB--
T ss_pred -cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh-hcCEEEEEEecCCCCcc-c
Confidence 35679999999999998887112234667889999999999899999999888766644 23455666665544443 4
Q ss_pred CCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 234 ISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.+...+.++++|+.. +..+.|.+||+ .+++.++.++|||.+|+||++.+
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIFK 199 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEESHHHHT
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhC
Confidence 5566677888887753 47899999998 59999999999999999999986
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-13 Score=120.91 Aligned_cols=179 Identities=19% Similarity=0.315 Sum_probs=130.7
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
..++| .+.++.+.+.|+|.+.+= ..|+ +. ..+.+ +++++++++..++|+++-+-.
T Consensus 27 ~~~dp-----~~~a~~~~~~g~d~l~v~------dl~~---------~~~~~~~~----~~~i~~i~~~~~~pv~~~GgI 82 (234)
T cd04732 27 YSDDP-----VEVAKKWEEAGAKWLHVV------DLDG---------AKGGEPVN----LELIEEIVKAVGIPVQVGGGI 82 (234)
T ss_pred ECCCH-----HHHHHHHHHcCCCEEEEE------CCCc---------cccCCCCC----HHHHHHHHHhcCCCEEEeCCc
Confidence 44566 899999999999999993 1121 11 13444 358888888889999997643
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe----------------CCCChHHHHHHHH
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT----------------TPTTPTDRMKAIV 212 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li----------------sp~t~~eri~~i~ 212 (311)
+. .+.++.+.+.|+|.+++++.++++...+.+..+++|-+.+.+. ++.++.+.++.+.
T Consensus 83 ~~------~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
T cd04732 83 RS------LEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFE 156 (234)
T ss_pred CC------HHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHH
Confidence 31 2456777889999999999988887778888888876333322 2334556666665
Q ss_pred Hh-CCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 213 EA-SEGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 213 ~~-a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+. ++.++|. ++.. |...+.+ .++++++++.+++|+++++||+++++++++.+.|||||+|||++.+
T Consensus 157 ~~ga~~iii~~~~~~---g~~~g~~---~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 157 ELGVKAIIYTDISRD---GTLSGPN---FELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred HcCCCEEEEEeecCC---CccCCCC---HHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 55 4455554 3333 3333322 4789999998899999999999999999999999999999999987
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-13 Score=118.36 Aligned_cols=197 Identities=15% Similarity=0.285 Sum_probs=151.4
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc----EEEEecCc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP----IALFTYYN 149 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP----iilm~Y~n 149 (311)
-|+..+.+..+++.++|+|+|+++ ++||.++.+-. +- --+++.+|+.+..| +.+|.
T Consensus 14 ~dfanL~~e~~~~l~~GadwlHlD------VMDg~FVpNiT---------~G--~pvV~slR~~~~~~~ffD~HmMV--- 73 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLHLD------VMDGHFVPNIT---------FG--PPVVESLRKHTGADPFFDVHMMV--- 73 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEEEe------eecccccCCcc---------cc--hHHHHHHHhccCCCcceeEEEee---
Confidence 355667788999999999999998 89997775432 11 23778888876555 55654
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG 229 (311)
..++++++....+|++.+.++--..++..++.+.+++.|++.-+-+.|.|+-+.+...++ --.++.++|+....|
T Consensus 74 ----~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGFG 148 (224)
T KOG3111|consen 74 ----ENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGFG 148 (224)
T ss_pred ----cCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCCc
Confidence 357899999999999999997444455678999999999999999999999888766544 336778888888788
Q ss_pred CCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHH
Q 021527 230 ARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~ 301 (311)
.+ .+-++....++.+|+.. ++-+-|.+|+. ++++.++.++||+.+|.||++.+.- ++.+.+..+++
T Consensus 149 GQ-kFme~mm~KV~~lR~kyp~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~a~----d~~~vi~~lr~ 215 (224)
T KOG3111|consen 149 GQ-KFMEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFGAA----DPSDVISLLRN 215 (224)
T ss_pred hh-hhHHHHHHHHHHHHHhCCCceEEecCCcC-cchHHHHHHcCCCEEEecceeecCC----CHHHHHHHHHH
Confidence 76 45556667899999765 55677999996 8999999999999999999999843 34444444443
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-13 Score=119.26 Aligned_cols=181 Identities=22% Similarity=0.182 Sum_probs=126.2
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYN 149 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n 149 (311)
...++.++..+.++.| ++|+|+||+|.|+..| ..++.++++|+. .+.++++-.-.
T Consensus 6 lD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~----------------------~g~~~i~~l~~~~~~~~i~~d~k~- 61 (206)
T TIGR03128 6 LDLLDIEEALELAEKV-ADYVDIIEIGTPLIKN----------------------EGIEAVKEMKEAFPDRKVLADLKT- 61 (206)
T ss_pred ecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHH----------------------hCHHHHHHHHHHCCCCEEEEEEee-
Confidence 4678899999999999 8999999998666332 124577777765 34555532210
Q ss_pred chhccCHHHH-HHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCeEEE-eCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 150 PILKRGVDNF-MSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIELVLF-TTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 150 ~i~~~g~~~f-i~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~I~l-isp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
.+...+ ++.+.++|+|-++++=... +...++.+.++++|+..+.- .+|.++.+.++...+. |..|+-...|
T Consensus 62 ----~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~--g~d~v~~~pg 135 (206)
T TIGR03128 62 ----MDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKEL--GADYIGVHTG 135 (206)
T ss_pred ----ccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHc--CCCEEEEcCC
Confidence 123345 7889999999998874432 34567888999999987765 5888877776655443 5555532233
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..|... .+...+.++++++..+ .++++-+|| +++++.++.+.|||++++||++++
T Consensus 136 ~~~~~~--~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 136 LDEQAK--GQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred cCcccC--CCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence 333322 2222356777777654 567778999 589999999999999999999987
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-13 Score=114.57 Aligned_cols=184 Identities=29% Similarity=0.314 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...++++.+.++|+|.++++.+..+|..+....+ +.++.+++..++|+++..+.|..... .
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 73 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDK-----------------EVLKEVAAETDLPLGVQLAINDAAAA-V 73 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccc-----------------cHHHHHHhhcCCcEEEEEccCCchhh-h
Confidence 58899999999999999999999988876653321 24555566678999998887754321 1
Q ss_pred HHHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR 231 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~ 231 (311)
....+.+.++|+|++.++.... +...++.+.+++. ++..+.-+.+....++.. +.+..-.++++....+.++..
T Consensus 74 ~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~~ 152 (200)
T cd04722 74 DIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGGR 152 (200)
T ss_pred hHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCCc
Confidence 1123578999999999986542 2345566666665 777777776655433321 223233444444433322222
Q ss_pred CCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.........+.++++..++||++++||++++++.++++.|||+++|||
T Consensus 153 -~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 153 -DAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred -cCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 222222345666777788999999999999999999999999999997
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=122.57 Aligned_cols=174 Identities=26% Similarity=0.386 Sum_probs=115.3
Q ss_pred EeCCCCChh-hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC--CHHHHHHHHHHhhccCCCcEEEE
Q 021527 69 ITAGDPDLS-TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT--NFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 69 i~~G~P~~~-~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~--~~~~~~~~i~~ir~~~~iPiilm 145 (311)
++.=||+.. ...+..+.+.+.|.|.|.+| |.. |+ +++++++.++++++ .+|++++
T Consensus 3 ~~~iDP~K~~~~~~~~~~~~~~gtdai~vG---------GS~-----------~v~~~~~~~~~~ik~~~~--~~Pvilf 60 (219)
T cd02812 3 VTKLDPDKELVDEEIAKLAEESGTDAIMVG---------GSD-----------GVSSTLDNVVRLIKRIRR--PVPVILF 60 (219)
T ss_pred ceeeCCCCCCCHHHHHHHHHhcCCCEEEEC---------Ccc-----------chhhhHHHHHHHHHHhcC--CCCEEEe
Confidence 344588874 33445555666999999998 422 23 56677777777765 6999998
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCChh--------hHHHHHHHHHH--cCCCeEEE----eC-----------
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE--------ETESLQKEAMK--NKIELVLF----TT----------- 200 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~e--------e~~~~~~~~~~--~gi~~I~l----is----------- 200 (311)
-.- .+. ..-|+|++++|-+-.. ...+.....++ .+++.++- +.
T Consensus 61 p~~-------~~~-----i~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a 128 (219)
T cd02812 61 PSN-------PEA-----VSPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGA 128 (219)
T ss_pred CCC-------ccc-----cCcCCCEEEEEeeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeecc
Confidence 531 111 1236999999865432 23334444455 56665541 12
Q ss_pred -CCChHHHHHHHHHhCC----ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCc
Q 021527 201 -PTTPTDRMKAIVEASE----GFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGAD 274 (311)
Q Consensus 201 -p~t~~eri~~i~~~a~----gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GAD 274 (311)
|...++.+..++..++ -++|+- .+|.. .+ .++++++|+.+ +.|+++||||+++|++++++++|||
T Consensus 129 ~~~~~~e~~~ayA~aae~~g~~ivyLe----~SG~~--~~---~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD 199 (219)
T cd02812 129 KTDLKPEDAAAYALAAEYLGMPIVYLE----YSGAY--GP---PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGAD 199 (219)
T ss_pred CcCCCHHHHHHHHHHHHHcCCeEEEeC----CCCCc--CC---HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 3333455545544432 346664 34443 22 36899999998 9999999999999999999999999
Q ss_pred EEEEhhHhhch
Q 021527 275 GVIVGSAMVKL 285 (311)
Q Consensus 275 GvIVGSaiv~~ 285 (311)
+|||||++++-
T Consensus 200 ~VVVGsai~~~ 210 (219)
T cd02812 200 TIVVGNIVEED 210 (219)
T ss_pred EEEECchhhCC
Confidence 99999999984
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=118.35 Aligned_cols=174 Identities=21% Similarity=0.320 Sum_probs=127.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.|+|.+.+= + .|+ ++ ..+.+ +++++++++.+++|+.+-+-.. . .+
T Consensus 31 ~~~a~~~~~~g~~~l~v~---d---l~~---------~~~g~~~~----~~~i~~i~~~~~~pi~~ggGI~-----~-~e 85 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVV---D---LDG---------AKEGGPVN----LPVIKKIVRETGVPVQVGGGIR-----S-LE 85 (230)
T ss_pred HHHHHHHHHcCCCEEEEE---e---CCc---------cccCCCCc----HHHHHHHHHhcCCCEEEeCCcC-----C-HH
Confidence 899999999999999992 1 122 11 12223 3588888888889999965321 1 34
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe-C---------------CCChHHHHHHHHHhC-CceEEE
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT-T---------------PTTPTDRMKAIVEAS-EGFVYL 221 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li-s---------------p~t~~eri~~i~~~a-~gfiY~ 221 (311)
-++.+.++|+|.++++..+.++...+.+.++++|.+.+.+. . +..+.+.++.+.+.. ..++|.
T Consensus 86 d~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 86 DVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred HHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 67788999999999999888887888888999986644321 1 234456666666653 446655
Q ss_pred -EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 -VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 -vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++..|.+ .+.+ .++++++++.+++|+++++||+++++++++.+.|||||+|||++.+
T Consensus 166 ~~~~~g~~---~g~~---~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 166 DISRDGTL---SGPN---FELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYE 223 (230)
T ss_pred eecCCCCc---CCCC---HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 4444432 2222 4678888888899999999999999999999999999999999987
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-12 Score=124.82 Aligned_cols=181 Identities=24% Similarity=0.262 Sum_probs=133.8
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~ 148 (311)
-...|+.++..++++.|.+.+++++|+|.|. + ++.| ++.++++|+. .+.|+.+-.-.
T Consensus 178 ALD~~~~~~A~~i~~~l~~~~~~~iKvG~~L---------~-------~~~G------~~iVk~Lr~~~~~~~I~~DLK~ 235 (391)
T PRK13307 178 ALDLPDLEEVERVLSQLPKSDHIIIEAGTPL---------I-------KKFG------LEVISKIREVRPDAFIVADLKT 235 (391)
T ss_pred ecCCCCHHHHHHHHHhcccccceEEEECHHH---------H-------HHhC------HHHHHHHHHhCCCCeEEEEecc
Confidence 4578999999999999998889999999554 2 2223 4678888876 56776664432
Q ss_pred cchhccCHHHH-HHHHHHcCCcEEEecCCChh-hHHHHHHHHHHcCCCeEE-EeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 149 NPILKRGVDNF-MSTVRDIGIRGLVVPDVPLE-ETESLQKEAMKNKIELVL-FTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 149 n~i~~~g~~~f-i~~~~~aGadGviipDlp~e-e~~~~~~~~~~~gi~~I~-lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
. .+.++ ++.+.++|+|.+.++-.... ...+..+.++++|++.+. ++.|.++.++++.+ .....++-+.+..
T Consensus 236 ~-----Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~v 309 (391)
T PRK13307 236 L-----DTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGI 309 (391)
T ss_pred c-----ChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEcccc
Confidence 2 23455 77899999999999854433 467788999999999888 88999998988776 3333444443322
Q ss_pred CccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 226 GVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. +|.+ .+ ..+.++++|+. .+.++.|.+||+ ++++.++.+.|||++||||+|++
T Consensus 310 d-p~~~---~~-~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 310 D-EEGT---EH-AWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKAGADILVVGRAITK 363 (391)
T ss_pred C-CCcc---cc-hHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 1 1211 22 23568888875 478999999998 89999999999999999999997
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.9e-12 Score=111.92 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...+.++.+.++|+|++|+..+- .+++.... .+.-++++.+..++|+++
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~l~~------------ 70 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKG----LDTRERLE--------------LARALKELCRRYGVPLIV------------ 70 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCC----CCHHHHHH--------------HHHHHHHHHHHhCCeEEE------------
Confidence 457889999999999999997553 22322221 112233343456777766
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASIS 235 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~ 235 (311)
.++++.+.+.|+||++++.-... ...+ ..++..+ ..+.++..|..+-. +.. ..|+.|+. +..-.|+.+.+..
T Consensus 71 ~~~~~~a~~~gad~vh~~~~~~~-~~~~-~~~~~~~--~~~g~~~~t~~e~~-~a~--~~gaD~v~~~~~~~~~~~~~~~ 143 (212)
T PRK00043 71 NDRVDLALAVGADGVHLGQDDLP-VADA-RALLGPD--AIIGLSTHTLEEAA-AAL--AAGADYVGVGPIFPTPTKKDAK 143 (212)
T ss_pred eChHHHHHHcCCCEEecCcccCC-HHHH-HHHcCCC--CEEEEeCCCHHHHH-HHh--HcCCCEEEECCccCCCCCCCCC
Confidence 24678899999999999743211 1111 2222333 33334444544432 222 35666663 2222344333332
Q ss_pred ch-HHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 236 GH-VQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 236 ~~-~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+. ..+.++++++..+ +||++.+||+ ++++.++.+.||||+++||+|.+
T Consensus 144 ~~~g~~~~~~~~~~~~~~~v~a~GGI~-~~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 144 APQGLEGLREIRAAVGDIPIVAIGGIT-PENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred CCCCHHHHHHHHHhcCCCCEEEECCcC-HHHHHHHHHcCCCEEEEeHHhhc
Confidence 22 2577888888776 9999999995 89999999999999999999987
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=113.84 Aligned_cols=189 Identities=16% Similarity=0.220 Sum_probs=129.0
Q ss_pred cCCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 60 QGKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
+++..+|+=+=.-.|.. ....++++.++++||++|-+= .||..-| -+ ++.+++
T Consensus 47 ~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvl---te~~~f~--------------g~----~~~l~~ 105 (260)
T PRK00278 47 AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVL---TDERFFQ--------------GS----LEYLRA 105 (260)
T ss_pred cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEe---cccccCC--------------CC----HHHHHH
Confidence 45567777663334432 346899999999999999773 4444333 12 467888
Q ss_pred hhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 134 VVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 134 ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
+|+.+++||+..-|.. ... .++.+.++|+|++++. +++.++..++.+.++..|+..+.=+ .+.+| ++..
T Consensus 106 v~~~v~iPvl~kdfi~-----~~~-qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvev--h~~~E-~~~A 176 (260)
T PRK00278 106 ARAAVSLPVLRKDFII-----DPY-QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEV--HDEEE-LERA 176 (260)
T ss_pred HHHhcCCCEEeeeecC-----CHH-HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEe--CCHHH-HHHH
Confidence 8888999998743322 222 5788999999999884 5677788999999999998765444 33333 3333
Q ss_pred HHhCCceEEEEecCCccCCC-CCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 212 VEASEGFVYLVSSIGVTGAR-ASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~-~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+ .|+.|+. +++.. ....++ .+...++.+.. +.|++..+||++++++.++.+.|||||+|||+|++.
T Consensus 177 ~~--~gadiIg----in~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 177 LK--LGAPLIG----INNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred HH--cCCCEEE----ECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 22 3555543 22211 112223 34556665544 368999999999999999999999999999999984
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-12 Score=115.46 Aligned_cols=176 Identities=22% Similarity=0.345 Sum_probs=119.0
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH--
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD-- 157 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~-- 157 (311)
.+.++.+.+.|+|.+++= |- |+ +. .+. .+-.+.++++.+..++|+++-+ |+.
T Consensus 35 ~e~a~~~~~~G~~~l~i~----dl--~~---------~~-~~~--~~~~~~i~~i~~~~~~~l~v~G--------Gi~~~ 88 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLV----DL--DG---------AF-EGE--RKNAEAIEKIIEAVGVPVQLGG--------GIRSA 88 (241)
T ss_pred HHHHHHHHHcCCCEEEEE----ec--hh---------hh-cCC--cccHHHHHHHHHHcCCcEEEcC--------CcCCH
Confidence 889999999999999983 21 21 11 110 1224578888888899999954 443
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE-EeCC---------------CChHHHHHHHHHhCCceEEE
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL-FTTP---------------TTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~-lisp---------------~t~~eri~~i~~~a~gfiY~ 221 (311)
+-++.+.++|+|++++.-...++...+.+..+.+|-+.+. -++. ..+.+.++.+.+..-+.+++
T Consensus 89 ~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~ 168 (241)
T PRK13585 89 EDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILF 168 (241)
T ss_pred HHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 3477888999999999755444444456666666644442 2221 13445555555544455555
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+.. ..|...+. ..+.++++++.+++||++++||++++++.++.+.|||||+|||++.+-
T Consensus 169 ~~~~-~~g~~~g~---~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 169 TNVD-VEGLLEGV---NTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred Eeec-CCCCcCCC---CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 4321 12332222 236788998888999999999999999999999999999999999873
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-11 Score=109.07 Aligned_cols=182 Identities=23% Similarity=0.255 Sum_probs=128.0
Q ss_pred cEEEEEeCCCCChhhH---HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 64 ALIPYITAGDPDLSTT---AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~---~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
.+-.|+..+.+..... .+.++.+.++|++.+++ ++...+....+ +.-.-++.+.++.++
T Consensus 5 ~~~lylvt~~~~~~~~~~~~~~ve~al~~Gv~~vQl----R~K~~~~~~~~--------------~~a~~~~~lc~~~~v 66 (211)
T COG0352 5 LLRLYLVTDRPLIYDGVDLLEWVEAALKGGVTAVQL----REKDLSDEEYL--------------ALAEKLRALCQKYGV 66 (211)
T ss_pred ccceEEEcCCccccccchhHHHHHHHHhCCCeEEEE----ecCCCChHHHH--------------HHHHHHHHHHHHhCC
Confidence 3456888777766432 79999999999999999 45444432221 112345566677899
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
|+++ ++.++.+.+.|+|||+++ |+|..+..++ .+-..++-+|..+ .+..++..+....|
T Consensus 67 ~liI------------Nd~~dlA~~~~AdGVHlGq~D~~~~~ar~~------~~~~~iIG~S~h~-~eea~~A~~~g~DY 127 (211)
T COG0352 67 PLII------------NDRVDLALAVGADGVHLGQDDMPLAEAREL------LGPGLIIGLSTHD-LEEALEAEELGADY 127 (211)
T ss_pred eEEe------------cCcHHHHHhCCCCEEEcCCcccchHHHHHh------cCCCCEEEeecCC-HHHHHHHHhcCCCE
Confidence 9999 356778889999999997 7887765543 3445566667664 45555544433344
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+-+.+.+ .|-++.+.++...+.++.+++..++|+++=+||+ ++++.++++.|||||.|-|+|..
T Consensus 128 v~~Gpif-pT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~-~~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 128 VGLGPIF-PTSTKPDAPPLGLEGLREIRELVNIPVVAIGGIN-LENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred EEECCcC-CCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHhCCCeEEehhHhhc
Confidence 4444444 4555555566566788889888889986666775 89999999999999999999998
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-11 Score=107.31 Aligned_cols=176 Identities=16% Similarity=0.068 Sum_probs=118.2
Q ss_pred EEeC-CCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 68 YITA-GDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 68 yi~~-G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
|+.. .+.+.+.+.+.++.+.++| +++|++ +++-.+.....+ ....++++.+..++|+++.
T Consensus 16 y~It~~~~~~~~~~~~l~~al~~G~v~~vQl----R~K~l~~~~~~~--------------~a~~l~~l~~~~gv~liIN 77 (221)
T PRK06512 16 VLVAPPIADGAELAKLLRAALQGGDVASVIL----PQYGLDEATFQK--------------QAEKLVPVIQEAGAAALIA 77 (221)
T ss_pred EEEeCCCcccccHHHHHHHHHcCCCccEEEE----eCCCCCHHHHHH--------------HHHHHHHHHHHhCCEEEEe
Confidence 5533 3333356889999999999 799999 555555422221 1223344445678999983
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV- 222 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v- 222 (311)
+.++.+.+.|+|||+++ |+++.+..+ ..|-+.++-++..++.+...+. ...|..|+.
T Consensus 78 ------------d~~dlA~~~~adGVHLg~~d~~~~~~r~------~~~~~~iiG~s~~~s~~~a~~A--~~~gaDYv~~ 137 (221)
T PRK06512 78 ------------GDSRIAGRVKADGLHIEGNLAALAEAIE------KHAPKMIVGFGNLRDRHGAMEI--GELRPDYLFF 137 (221)
T ss_pred ------------CHHHHHHHhCCCEEEECccccCHHHHHH------hcCCCCEEEecCCCCHHHHHHh--hhcCCCEEEE
Confidence 45778889999999999 777655442 2344556666533334433332 235666763
Q ss_pred -ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 223 -SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 223 -s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.. |.++...++...+.++.+++.+++||++=+||+ ++++.++.+.|||||.|-|+|.+
T Consensus 138 Gpv~--t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI~-~~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 138 GKLG--ADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGSD-LASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred CCCC--CCCCCCCCCCChHHHHHHHHhCCCCEEEEeCCC-HHHHHHHHHhCCCEEEEhHHhhC
Confidence 332 334444444445778888888899998888995 89999999999999999999997
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-11 Score=110.87 Aligned_cols=184 Identities=20% Similarity=0.296 Sum_probs=140.9
Q ss_pred eCCCCCh-----hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHHHHHHhhccCCCcEE
Q 021527 70 TAGDPDL-----STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG-TNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 70 ~~G~P~~-----~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G-~~~~~~~~~i~~ir~~~~iPii 143 (311)
.=|+++. +...+.++.+.+.|+..+|+- ..|| |.+.+ .| ++.++++.+.+++||.
T Consensus 19 ~qGd~~~~~~y~~~P~~~a~~~~~~Ga~~lHlV------DLdg---------A~~g~~~n----~~~i~~i~~~~~~~vQ 79 (241)
T COG0106 19 VQGDYGKETVYSDDPLEVAKKWSDQGAEWLHLV------DLDG---------AKAGGPRN----LEAIKEILEATDVPVQ 79 (241)
T ss_pred ecccCCcceEecCCHHHHHHHHHHcCCcEEEEe------eccc---------cccCCccc----HHHHHHHHHhCCCCEE
Confidence 4455554 245899999999999999996 5677 43222 33 3688999999999999
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-e---------------CCCChHHH
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-T---------------TPTTPTDR 207 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-i---------------sp~t~~er 207 (311)
+-+=.+ ..+.++.+.++|++-||+.-.+.++...+++.++++| +.|.+ + +.-+..+-
T Consensus 80 vGGGIR------s~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l 152 (241)
T COG0106 80 VGGGIR------SLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEEL 152 (241)
T ss_pred eeCCcC------CHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHH
Confidence 976322 1356778899999999999999999999999999999 65553 1 22234455
Q ss_pred HHHHHHh-CCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 208 MKAIVEA-SEGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 208 i~~i~~~-a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
++++.+. ...|+|. ++..|+- .+.+ .+.++++.+.+++|+++.+||++-+|++.+.+. |.+|+|||+||+.
T Consensus 153 ~~~~~~~g~~~ii~TdI~~DGtl---~G~n---~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 153 AKRLEEVGLAHILYTDISRDGTL---SGPN---VDLVKELAEAVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred HHHHHhcCCCeEEEEeccccccc---CCCC---HHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhc
Confidence 6666555 4678888 6776632 2333 356788888889999999999999999999999 8999999999997
Q ss_pred h
Q 021527 285 L 285 (311)
Q Consensus 285 ~ 285 (311)
.
T Consensus 227 g 227 (241)
T COG0106 227 G 227 (241)
T ss_pred C
Confidence 3
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.5e-11 Score=109.03 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=128.9
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
..++| .+.++.+.+.|+|.+++- ..|+ +...+.+ ++.++++.+.+.+|+.+-+-.+
T Consensus 33 ~~~dp-----~~~a~~~~~~g~~~l~i~------DLd~---------~~~~~~n----~~~i~~i~~~~~~~v~vgGGir 88 (233)
T cd04723 33 STSDP-----LDVARAYKELGFRGLYIA------DLDA---------IMGRGDN----DEAIRELAAAWPLGLWVDGGIR 88 (233)
T ss_pred cCCCH-----HHHHHHHHHCCCCEEEEE------eCcc---------ccCCCcc----HHHHHHHHHhCCCCEEEecCcC
Confidence 35677 899999999999999994 2343 1123334 4588888888889998876332
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCC-CeEEEeC-----------CCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI-ELVLFTT-----------PTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi-~~I~lis-----------p~t~~eri~~i~~~a~g 217 (311)
. .+-++.+.++|++-+++.-..+.. ..+.+.++++|= ..++-+. ..++.+.++.+.+....
T Consensus 89 ~------~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (233)
T cd04723 89 S------LENAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEE 161 (233)
T ss_pred C------HHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCe
Confidence 1 245667888999999998877777 667778888875 3343222 22355666777666445
Q ss_pred eEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 218 FVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 218 fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
++|+ ++..| +..+.+ .++++++.+.+++|+++|+||++.++++++++.|+|+|||||++...
T Consensus 162 li~~di~~~G---~~~g~~---~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 162 LIVLDIDRVG---SGQGPD---LELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred EEEEEcCccc---cCCCcC---HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 5555 33333 222322 36788888888999999999999999999999999999999999874
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-11 Score=108.18 Aligned_cols=174 Identities=15% Similarity=0.166 Sum_probs=125.3
Q ss_pred HHHHHHHHH-CCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 80 AEALKLLDS-CGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 80 ~e~~~~L~~-~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
.+.++.+.+ .|+|.+++- ..|| +. ....| +++++++.+.+++|+.+-+-.+. .
T Consensus 34 ~~~a~~~~~~~Ga~~l~iv------DLd~---------a~~~~~~n----~~~I~~i~~~~~~pi~vGGGIrs------~ 88 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIV------DLIG---------AKAQHARE----FDYIKSLRRLTTKDIEVGGGIRT------K 88 (234)
T ss_pred HHHHHHHHhccCCCEEEEE------ECcc---------cccCCcch----HHHHHHHHhhcCCeEEEcCCcCC------H
Confidence 779999998 799999994 2344 11 11223 46899998888999988653221 2
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC---------------CCChHHHHHHHHHhC-CceEEE
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT---------------PTTPTDRMKAIVEAS-EGFVYL 221 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis---------------p~t~~eri~~i~~~a-~gfiY~ 221 (311)
+-++.+.++|++-+++.-..+++...+.+.++++|=..+.-+. ..++.+.++++.+.. ..++|.
T Consensus 89 e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 168 (234)
T PRK13587 89 SQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYT 168 (234)
T ss_pred HHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 4577788899999999988777777788888888733332211 122345566665543 456776
Q ss_pred -EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 -VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 -vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++..|+ ..+.+ .++++++++.+++|+++++||+++|+++++++.|+|||||||++.+
T Consensus 169 di~~dGt---~~G~~---~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 169 DIAKDGK---MSGPN---FELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred cccCcCC---CCccC---HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 555442 22333 3678888888899999999999999999999999999999999997
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-11 Score=106.64 Aligned_cols=175 Identities=21% Similarity=0.316 Sum_probs=117.4
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.|+|.+++= | .|| ++ ..+.+ ++.++++++.+++|+++-+-.. . .+
T Consensus 33 ~~~a~~~~~~g~~~i~v~----d--ld~---------~~~g~~~~----~~~i~~i~~~~~~pv~~~GGI~-----~-~e 87 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLV----D--LDG---------AKAGKPVN----LELIEAIVKAVDIPVQVGGGIR-----S-LE 87 (233)
T ss_pred HHHHHHHHHcCCCEEEEE----e--CCc---------cccCCccc----HHHHHHHHHHCCCCEEEcCCcC-----C-HH
Confidence 899999999999999993 1 133 11 11233 4688888888899998865322 1 24
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC---------------CCChHHHHHHHHHhCCc-eEEE-
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT---------------PTTPTDRMKAIVEASEG-FVYL- 221 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis---------------p~t~~eri~~i~~~a~g-fiY~- 221 (311)
-++.+.+.|++++++.-..++....+.+.+++++-..++-+. ...+.+..+.+.+..-+ +++.
T Consensus 88 d~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~ 167 (233)
T PRK00748 88 TVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTD 167 (233)
T ss_pred HHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEee
Confidence 567788899999999765555444455555554322222221 22334555555444344 3333
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhch
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVKL 285 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~~ 285 (311)
++..| ...+.+ .+.++++++.+++|+++++||++++|++++.+.| +|||+||+++...
T Consensus 168 ~~~~g---~~~G~d---~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 168 ISRDG---TLSGPN---VEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred ecCcC---CcCCCC---HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 33333 222322 4678999888899999999999999999999998 9999999999873
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-10 Score=101.42 Aligned_cols=170 Identities=21% Similarity=0.244 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
....+.++.+.++|++.|++-.+-.++ .+.+ +.++.++++....++++++.
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~~~~---~~~~---------------~~~~~i~~~~~~~~~~l~~~----------- 62 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKDLSA---RELL---------------ELARALRELCRKYGVPLIIN----------- 62 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCCH---HHHH---------------HHHHHHHHHHHHhCCeEEEe-----------
Confidence 567899999999999999997542211 1111 11223333323356676652
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE--ecCCccCCCCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV--SSIGVTGARASI 234 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v--s~~G~TG~~~~~ 234 (311)
++++.+.+.|+||+++++.... ...+ ..+...+ ..+.++..++ +.+.+..+ .|+.|+. +.. .|+.+.+.
T Consensus 63 -~~~~~a~~~g~~~vh~~~~~~~-~~~~-~~~~~~~--~~~g~~~~t~-~~~~~~~~--~g~d~i~~~~~~-~~~~~~~~ 133 (196)
T cd00564 63 -DRVDLALAVGADGVHLGQDDLP-VAEA-RALLGPD--LIIGVSTHSL-EEALRAEE--LGADYVGFGPVF-PTPTKPGA 133 (196)
T ss_pred -ChHHHHHHcCCCEEecCcccCC-HHHH-HHHcCCC--CEEEeeCCCH-HHHHHHhh--cCCCEEEECCcc-CCCCCCCC
Confidence 3566788999999999853211 1111 2222233 3444454554 44444333 3555552 222 23333332
Q ss_pred -CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 235 -SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 235 -~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+...+.++++++..++||++.+||+ ++++.++.+.|+||+++||++.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 134 GPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCCEEEEehHhhcC
Confidence 33345778888888889999999996 799999999999999999999863
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-11 Score=111.69 Aligned_cols=178 Identities=22% Similarity=0.301 Sum_probs=123.4
Q ss_pred HHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 79 TAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+.+.++..+++|+=.+.. -+| +|+-..| |+.=-+-.+.|++|++.+++||+-.. +.|.
T Consensus 17 ~~~qa~~ae~aga~~v~~~~~~~-~~~~~~~-------------~v~R~~~~~~I~~Ik~~V~iPVIGi~------K~~~ 76 (283)
T cd04727 17 NAEQARIAEEAGAVAVMALERVP-ADIRAAG-------------GVARMADPKMIKEIMDAVSIPVMAKV------RIGH 76 (283)
T ss_pred CHHHHHHHHHcCceEEeeeccCc-hhhhhcC-------------CeeecCCHHHHHHHHHhCCCCeEEee------ehhH
Confidence 468899999999988776 333 3443333 32111235689999999999998853 3444
Q ss_pred HHHHHHHHHcCCcEEEecCCChh--hHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCC---
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLE--ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGA--- 230 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~e--e~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~--- 230 (311)
.+-++.+.++|+|-+ |.... -..++...++.. .+..++..-.|-+|-+. +...||.++. +..|.||.
T Consensus 77 ~~Ea~~L~eaGvDiI---DaT~r~rP~~~~~~~iK~~-~~~l~MAD~stleEal~---a~~~Gad~I~TTl~gyT~~~~~ 149 (283)
T cd04727 77 FVEAQILEALGVDMI---DESEVLTPADEEHHIDKHK-FKVPFVCGARNLGEALR---RISEGAAMIRTKGEAGTGNVVE 149 (283)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCcHHHHHHHHHHH-cCCcEEccCCCHHHHHH---HHHCCCCEEEecCCCCCCcHHH
Confidence 566778999999987 43211 145566666664 24444444444444433 3457888885 46678886
Q ss_pred --------------------------CCCCCchHHHHHHHHhhcCCCcEE--EeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 231 --------------------------RASISGHVQTLLREIKESSTKPVA--VGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 231 --------------------------~~~~~~~~~~~l~~vk~~~~~Pv~--vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.....+ ..++|+++++..++||+ +-+||+||+|+.++.+.|||||+|||+|
T Consensus 150 ~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~-d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI 228 (283)
T cd04727 150 AVRHMRAVNGEIRKLQSMSEEELYAVAKEIQA-PYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGI 228 (283)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhhcccCC-CHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHh
Confidence 112222 24789999998889997 9999999999999999999999999999
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 229 ~~ 230 (283)
T cd04727 229 FK 230 (283)
T ss_pred hc
Confidence 97
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=112.51 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
....+.+..+.++|+++|.+ +++-.|..... +....+.++.+..++++++
T Consensus 157 ~~ll~~l~~al~~Gv~~VQL----R~K~~~~~~~~--------------~~a~~L~~l~~~~~~~lII------------ 206 (347)
T PRK02615 157 ENLLEVVEAALKGGVTLVQY----RDKTADDRQRL--------------EEAKKLKELCHRYGALFIV------------ 206 (347)
T ss_pred hhHHHHHHHHHHcCCCEEEE----CCCCCCHHHHH--------------HHHHHHHHHHHHhCCeEEE------------
Confidence 45788899999999999999 45544432111 1123444555567788888
Q ss_pred HHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE-EecCCccCCCCC
Q 021527 157 DNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARAS 233 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~ 233 (311)
.++++.+...|+|||+++ |+|..+...+ .|-+.++.++.++.++-. +. ...|+.|+ ++-...|.++.+
T Consensus 207 ND~vdlAl~~~aDGVHLgq~dl~~~~aR~l------lg~~~iIG~S~Hs~~e~~-~A--~~~GaDYI~lGPvf~T~tKp~ 277 (347)
T PRK02615 207 NDRVDIALAVDADGVHLGQEDLPLAVARQL------LGPEKIIGRSTTNPEEMA-KA--IAEGADYIGVGPVFPTPTKPG 277 (347)
T ss_pred eChHHHHHHcCCCEEEeChhhcCHHHHHHh------cCCCCEEEEecCCHHHHH-HH--HHcCCCEEEECCCcCCCCCCC
Confidence 356788899999999997 7776554322 355567677777655532 22 24577787 343445666655
Q ss_pred CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 234 ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.++-..+.++.+++.+++|+++=+||+ ++++.++...|||||.|+|++.+
T Consensus 278 ~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 278 KAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCcEEEEeHHHhC
Confidence 444445788888888899999999996 89999999999999999999997
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-10 Score=102.16 Aligned_cols=201 Identities=24% Similarity=0.231 Sum_probs=138.3
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~ 148 (311)
-...++++...++++.+.+. +|+||+|.|. |.+ .| ++.|+++|+. .+.+|+...
T Consensus 9 ALD~~~l~~Ai~~a~~v~~~-~diiEvGTpL---------ik~-------eG------~~aV~~lr~~~pd~~IvAD~-- 63 (217)
T COG0269 9 ALDLLDLEEAIEIAEEVADY-VDIIEVGTPL---------IKA-------EG------MRAVRALRELFPDKIIVADL-- 63 (217)
T ss_pred eecccCHHHHHHHHHHhhhc-ceEEEeCcHH---------HHH-------hh------HHHHHHHHHHCCCCeEEeee--
Confidence 45789999999999999999 9999999544 332 23 4578888876 455566643
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCe-EEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIEL-VLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~-I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
.+.-.. .=+.+.+.++|+|-+.+.-+.. +-.....+.++++|.+. +-++...++++|.+.+.+. |..|+.=..|
T Consensus 64 Kt~D~G--~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~--gvd~~~~H~g 139 (217)
T COG0269 64 KTADAG--AIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKEL--GVDQVILHRG 139 (217)
T ss_pred eecchh--HHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHh--CCCEEEEEec
Confidence 222222 2257889999999988865444 34566888999999864 3467777888998887654 3333332223
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCC--CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHH
Q 021527 227 VTGARASISGHVQTLLREIKESST--KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
.=-...+..++ .+.+..+|+..+ ..|.|.+||+ ++++..+...|+|-||||++|.+.- +| .+..++|.+
T Consensus 140 ~D~q~~G~~~~-~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~~~~~~ivIvGraIt~a~----dp---~~~a~~~~~ 210 (217)
T COG0269 140 RDAQAAGKSWG-EDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFKGIGADIVIVGRAITGAK----DP---AEAARKFKE 210 (217)
T ss_pred ccHhhcCCCcc-HHHHHHHHHhhccCceEEEecCCC-HHHHHHHhcCCCCEEEECchhcCCC----CH---HHHHHHHHH
Confidence 21111222221 245777777664 7999999996 9999999999999999999999832 23 345566666
Q ss_pred HHHh
Q 021527 305 SLKS 308 (311)
Q Consensus 305 ~l~~ 308 (311)
.|+.
T Consensus 211 ~i~~ 214 (217)
T COG0269 211 EIDK 214 (217)
T ss_pred HHhc
Confidence 6643
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-10 Score=103.32 Aligned_cols=179 Identities=19% Similarity=0.201 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
...+.++.+++.|+|.|.+= |-..+| ...|.+ ++.++++++.+++|+++-+-.+ . .
T Consensus 28 d~~~~a~~~~~~G~~~i~i~----d~~~~~----------~~~~~~----~~~i~~i~~~~~~pv~~~GGI~-----s-~ 83 (243)
T cd04731 28 DPVELAKRYNEQGADELVFL----DITASS----------EGRETM----LDVVERVAEEVFIPLTVGGGIR-----S-L 83 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEE----cCCccc----------ccCccc----HHHHHHHHHhCCCCEEEeCCCC-----C-H
Confidence 45899999999999977773 111122 012333 3688889888899999876332 1 2
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCC-eEEEeC--------------------CCChHHHHHHHHHhCC
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIE-LVLFTT--------------------PTTPTDRMKAIVEASE 216 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~-~I~lis--------------------p~t~~eri~~i~~~a~ 216 (311)
+-++.+.+.|++++++.-..++....+.+.+++++-+ .+.-+. +....+.++.+.+ .
T Consensus 84 ~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~--~ 161 (243)
T cd04731 84 EDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE--L 161 (243)
T ss_pred HHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH--C
Confidence 3456666789999999765555555566666666543 332222 2222344444433 3
Q ss_pred ceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhch
Q 021527 217 GFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVKL 285 (311)
Q Consensus 217 gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~~ 285 (311)
|+.++ ++.....|...+. ..++++++++.+++||++.+||++++++.++++. |+|||+||++|...
T Consensus 162 G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~ 229 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGY---DLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred CCCEEEEeccCCCCCCCCC---CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence 44333 2222222333333 2477899988889999999999999999999987 99999999999973
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=108.26 Aligned_cols=180 Identities=22% Similarity=0.275 Sum_probs=122.2
Q ss_pred HHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 79 TAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+.|.++..+++|+=.+.. -+|. |.-++|-+- ++ +-.+.|++|++.+++||+-.. +.|.
T Consensus 19 ~~eqa~iae~aga~avm~le~~p~-d~r~~ggv~------------R~-~~p~~I~~I~~~V~iPVig~~------kigh 78 (287)
T TIGR00343 19 NPEQAKIAEEAGAVAVMALERVPA-DIRASGGVA------------RM-SDPKMIKEIMDAVSIPVMAKV------RIGH 78 (287)
T ss_pred CHHHHHHHHHcCceEEEeeccCch-hhHhcCCee------------ec-CCHHHHHHHHHhCCCCEEEEe------eccH
Confidence 368899999999988776 3333 333333221 11 225689999999999998853 4455
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCC-----
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGA----- 230 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~----- 230 (311)
..-++.+.++|+|-+=-.+.+ .-..++....+. ..+..+++...+-.|-+.. ...||.++- +..|.||.
T Consensus 79 ~~Ea~~L~~~GvDiIDeTe~l-rPade~~~~~K~-~f~vpfmad~~~l~EAlra---i~~GadmI~Tt~e~gTg~v~~av 153 (287)
T TIGR00343 79 FVEAQILEALGVDYIDESEVL-TPADWTFHIDKK-KFKVPFVCGARDLGEALRR---INEGAAMIRTKGEAGTGNIVEAV 153 (287)
T ss_pred HHHHHHHHHcCCCEEEccCCC-CcHHHHHHHHHH-HcCCCEEccCCCHHHHHHH---HHCCCCEEeccccCCCccHHHHH
Confidence 556678899999987211211 114455555554 3344444454554554443 357887775 45677885
Q ss_pred -------------------------CCCCCchHHHHHHHHhhcCCCcEE--EeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 231 -------------------------RASISGHVQTLLREIKESSTKPVA--VGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 231 -------------------------~~~~~~~~~~~l~~vk~~~~~Pv~--vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
.....+ ..++|+++++..++||+ +-+||.||+|+..+.+.|||||+|||+|.
T Consensus 154 ~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ 232 (287)
T TIGR00343 154 RHMRKINEEIRQIQNMLEEEDLAAVAKELRV-PVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 232 (287)
T ss_pred HHHHHHHHHHHHHhcccchhHHhhhhcccCC-CHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhh
Confidence 111222 34789999888889998 99999999999999999999999999999
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 233 k 233 (287)
T TIGR00343 233 K 233 (287)
T ss_pred c
Confidence 7
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-10 Score=100.29 Aligned_cols=175 Identities=22% Similarity=0.274 Sum_probs=111.9
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
||+-....+...+.+..+.++|++.|.+ ++|-.+....++ ..+.+.++.++.++|+++.
T Consensus 4 It~~~~~~~~~~~~l~~~~~~gv~~v~l----R~k~~~~~~~~~--------------~a~~l~~~~~~~~~~liin--- 62 (180)
T PF02581_consen 4 ITDPRLCGDDFLEQLEAALAAGVDLVQL----REKDLSDEELLE--------------LARRLAELCQKYGVPLIIN--- 62 (180)
T ss_dssp EE-STTSTCHHHHHHHHHHHTT-SEEEE----E-SSS-HHHHHH--------------HHHHHHHHHHHTTGCEEEE---
T ss_pred EeCCchhcchHHHHHHHHHHCCCcEEEE----cCCCCCccHHHH--------------HHHHHHHHhhcceEEEEec---
Confidence 4544454578999999999999999999 555444433322 2233344445568899994
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
++.+.+.+.|+|||+++ |++..+.. +.+ +-+.++.++..+.++ +++..+..-.|+.+...+
T Consensus 63 ---------~~~~la~~~~~dGvHl~~~~~~~~~~r---~~~---~~~~~ig~S~h~~~e-~~~a~~~g~dYv~~gpvf- 125 (180)
T PF02581_consen 63 ---------DRVDLALELGADGVHLGQSDLPPAEAR---KLL---GPDKIIGASCHSLEE-AREAEELGADYVFLGPVF- 125 (180)
T ss_dssp ---------S-HHHHHHCT-SEEEEBTTSSSHHHHH---HHH---TTTSEEEEEESSHHH-HHHHHHCTTSEEEEETSS-
T ss_pred ---------CCHHHHHhcCCCEEEecccccchHHhh---hhc---ccceEEEeecCcHHH-HHHhhhcCCCEEEECCcc-
Confidence 35677888999999997 55544433 222 334566677777666 444433333444444444
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|-++.+.++--.+.++++++..++||++=+||+ ++++.++.+.|||||.|.|+|
T Consensus 126 ~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 126 PTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVAVISAI 180 (180)
T ss_dssp --SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred CCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEEEEeeC
Confidence 3555555555556778888888899999999995 799999999999999999886
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5e-10 Score=103.55 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=115.7
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+|.+.+- |=.+++ -..+.+ ++.++++++.+++|+++-+=.. ..+.
T Consensus 33 ~~~a~~~~~~G~~~i~i~----dl~~~~----------~~~~~~----~~~i~~i~~~~~ipv~~~GGi~------s~~~ 88 (253)
T PRK02083 33 VELAKRYNEEGADELVFL----DITASS----------EGRDTM----LDVVERVAEQVFIPLTVGGGIR------SVED 88 (253)
T ss_pred HHHHHHHHHcCCCEEEEE----eCCccc----------ccCcch----HHHHHHHHHhCCCCEEeeCCCC------CHHH
Confidence 899999999999999993 111111 011223 5689999988999999976322 1345
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCC-eEEEeC---------------------CCChHHHHHHHHHhCCc
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIE-LVLFTT---------------------PTTPTDRMKAIVEASEG 217 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~-~I~lis---------------------p~t~~eri~~i~~~a~g 217 (311)
++.+.+.|++++++.-..++....+.+..+.+|=+ .+..+. ..+..+.++++.+ .|
T Consensus 89 ~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~g 166 (253)
T PRK02083 89 ARRLLRAGADKVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE--LG 166 (253)
T ss_pred HHHHHHcCCCEEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH--cC
Confidence 56667799999998754444444455556666522 222221 1123344455444 34
Q ss_pred eEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhch
Q 021527 218 FVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVKL 285 (311)
Q Consensus 218 fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~~ 285 (311)
+-++ ++.....|..++.+ .++++++++.+++||++++||++++++.++++. |+|||++||+|...
T Consensus 167 ~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 167 AGEILLTSMDRDGTKNGYD---LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred CCEEEEcCCcCCCCCCCcC---HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 4322 22222334444443 467888888889999999999999999999975 99999999999973
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-10 Score=101.76 Aligned_cols=177 Identities=15% Similarity=0.191 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
+..+.++.+.+.|+|.+.+= |--.+| -..|.+. ++++++++.+++|+++-+-.+ . .
T Consensus 31 dp~~~a~~~~~~g~~~i~i~----dl~~~~----------~~~~~n~----~~~~~i~~~~~~pv~~~ggi~-----~-~ 86 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVL----DIDASK----------RGREPLF----ELISNLAEECFMPLTVGGGIR-----S-L 86 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEE----eCCCcc----------cCCCCCH----HHHHHHHHhCCCCEEEECCCC-----C-H
Confidence 34899999999999988882 211121 0134454 588888888899998864222 1 2
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE-EeC---------------------CCChHHHHHHHHHhC
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL-FTT---------------------PTTPTDRMKAIVEAS 215 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~-lis---------------------p~t~~eri~~i~~~a 215 (311)
+.++.+.+.|++++++....++....+.+..++++-+.+. .+. +..+.+.++.+.+..
T Consensus 87 ~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G 166 (232)
T TIGR03572 87 EDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLG 166 (232)
T ss_pred HHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcC
Confidence 3455577889999999876666666666667777654332 111 122334455554433
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHH-HHHcCCcEEEEhhHh
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQ-VAGWGADGVIVGSAM 282 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~-v~~~GADGvIVGSai 282 (311)
-.++.+.+ ....|...+. ..++++++++.+++||++++||++++++.+ +.+.|||||+|||+|
T Consensus 167 ~d~i~i~~-i~~~g~~~g~---~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 167 AGEILLNS-IDRDGTMKGY---DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCEEEEeC-CCccCCcCCC---CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 23333222 1123333333 257899999989999999999999999999 888999999999997
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-09 Score=100.99 Aligned_cols=175 Identities=17% Similarity=0.197 Sum_probs=117.6
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+|.+++= | .|+.. -..+.+ +++++++++.+++|+++-+=.. . .+.
T Consensus 33 ~~~a~~~~~~G~~~l~v~----D--l~~~~--------~~~~~n----~~~i~~i~~~~~~pv~~~GGi~-----s-~~d 88 (254)
T TIGR00735 33 VELAQRYDEEGADELVFL----D--ITASS--------EGRTTM----IDVVERTAETVFIPLTVGGGIK-----S-IED 88 (254)
T ss_pred HHHHHHHHHcCCCEEEEE----c--CCccc--------ccChhh----HHHHHHHHHhcCCCEEEECCCC-----C-HHH
Confidence 899999999999999994 1 12200 012222 5688999888999999975321 1 345
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCC-CeEEEeC-----------------------CCChHHHHHHHHHhC
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI-ELVLFTT-----------------------PTTPTDRMKAIVEAS 215 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi-~~I~lis-----------------------p~t~~eri~~i~~~a 215 (311)
++.+.++|++++++.-..+++...+.+..+.+|= ..++-+. .....+.++.+.+..
T Consensus 89 ~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G 168 (254)
T TIGR00735 89 VDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG 168 (254)
T ss_pred HHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC
Confidence 6667779999999986666666666666777763 3333332 111223344444433
Q ss_pred CceEEE--EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 216 EGFVYL--VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 216 ~gfiY~--vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
-.++.+ ++..| ...+.+ .++++++++.+++||++.+||++++++.++++.| +|||++|+++..
T Consensus 169 ~~~iivt~i~~~g---~~~g~~---~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 169 AGEILLTSMDKDG---TKSGYD---LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred CCEEEEeCcCccc---CCCCCC---HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 333333 22222 222222 4678999998999999999999999999999988 999999999986
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-09 Score=95.09 Aligned_cols=172 Identities=13% Similarity=0.164 Sum_probs=109.3
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEE
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALF 145 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm 145 (311)
+|+......+.+.+.++ +.++|+++|++ ++|-.+. +++.+.++++++. ...++++.
T Consensus 6 ~it~~~~~~~~~~~~~~-~~~~g~~~iql----R~k~~~~-----------------~~~~~~~~~l~~~~~~~~~liin 63 (201)
T PRK07695 6 VISNGHQSFEELVAVAM-QIHSEVDYIHI----REREKSA-----------------KELYEGVESLLKKGVPASKLIIN 63 (201)
T ss_pred EEECCccccchHHHHHH-HHhCCCCEEEE----cCCCCCH-----------------HHHHHHHHHHHHhCCCCCeEEEE
Confidence 34544433455666776 77899999999 5554444 3334455555532 12346662
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecC--CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPD--VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipD--lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
++.+.+.+.|+||++++. ++.++ +++. .. +.+..++..+. +...+..+ .|+.|++.
T Consensus 64 ------------~~~~la~~~~~~gvHl~~~~~~~~~---~r~~---~~-~~~ig~s~~s~-e~a~~a~~--~Gadyi~~ 121 (201)
T PRK07695 64 ------------DRVDIALLLNIHRVQLGYRSFSVRS---VREK---FP-YLHVGYSVHSL-EEAIQAEK--NGADYVVY 121 (201)
T ss_pred ------------CHHHHHHHcCCCEEEeCcccCCHHH---HHHh---CC-CCEEEEeCCCH-HHHHHHHH--cCCCEEEE
Confidence 357788899999999973 44332 2222 22 33444555554 44444333 56667642
Q ss_pred -cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 224 -SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 224 -~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
....|.++.+.+....+.++++++.+++||++-+|| +++++.++.+.|+|||.|||+|.+
T Consensus 122 g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 122 GHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 222243333333323467888888889999999999 699999999999999999999997
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-10 Score=102.20 Aligned_cols=180 Identities=22% Similarity=0.278 Sum_probs=121.1
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
..||| .+.++.+.+.|+|.|++- ..|+ +...+.+ +++++++.+.+++|+.+-+=..
T Consensus 30 ~~~dp-----~~~a~~~~~~g~~~l~iv------DLd~---------~~g~~~n----~~~i~~i~~~~~~pv~vgGGir 85 (241)
T PRK14024 30 SYGSP-----LDAALAWQRDGAEWIHLV------DLDA---------AFGRGSN----RELLAEVVGKLDVKVELSGGIR 85 (241)
T ss_pred ECCCH-----HHHHHHHHHCCCCEEEEE------eccc---------cCCCCcc----HHHHHHHHHHcCCCEEEcCCCC
Confidence 35677 889999999999999994 2344 1223333 3689999888899999875322
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE--e------------CCCChHHHHHHHHHhC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF--T------------TPTTPTDRMKAIVEAS 215 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l--i------------sp~t~~eri~~i~~~a 215 (311)
. .+.++.+.+.|++-+++.-..+++...+.+.+++++=..++- + +...+.+.++.+.+..
T Consensus 86 s------~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G 159 (241)
T PRK14024 86 D------DESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG 159 (241)
T ss_pred C------HHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC
Confidence 1 246778888999999998766665555555555554222210 1 1112234455554443
Q ss_pred Cc-eEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH---cCCcEEEEhhHhhch
Q 021527 216 EG-FVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG---WGADGVIVGSAMVKL 285 (311)
Q Consensus 216 ~g-fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~---~GADGvIVGSaiv~~ 285 (311)
-+ ++|. ++..| ...+.+ .++++++++.+++||++++||+|.+|+.++.+ .|+|||+||+++..-
T Consensus 160 ~~~iiv~~~~~~g---~~~G~d---~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 160 CSRYVVTDVTKDG---TLTGPN---LELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred CCEEEEEeecCCC---CccCCC---HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 33 3433 33333 222322 47889999988999999999999999999864 499999999999973
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-09 Score=95.73 Aligned_cols=168 Identities=21% Similarity=0.239 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...+.++.+.++|++.|++= ++-.+..... +.+..+..+.+..+.|+++.
T Consensus 13 ~~~~~~~~~~~~~g~~~v~lR----~~~~~~~~~~--------------~~~~~l~~~~~~~~~~l~i~----------- 63 (196)
T TIGR00693 13 ADLLNRVEAALKGGVTLVQLR----DKGSNTRERL--------------ALAEKLQELCRRYGVPFIVN----------- 63 (196)
T ss_pred ccHHHHHHHHHhcCCCEEEEe----cCCCCHHHHH--------------HHHHHHHHHHHHhCCeEEEE-----------
Confidence 457788899999999999994 3333332222 12233444444567888883
Q ss_pred HHHHHHHHHcCCcEEEecC--CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE-EecCCccCCCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPD--VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARAS 233 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipD--lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~ 233 (311)
++++.+.+.|+|||++++ ++.++.. .. .+-..+..++-.+..+.. +..+ .|..|+ .+..-.|+++..
T Consensus 64 -~~~~la~~~g~~GvHl~~~~~~~~~~r---~~---~~~~~~ig~s~h~~~e~~-~a~~--~g~dyi~~~~v~~t~~k~~ 133 (196)
T TIGR00693 64 -DRVDLALALGADGVHLGQDDLPASEAR---AL---LGPDKIIGVSTHNLEELA-EAEA--EGADYIGFGPIFPTPTKKD 133 (196)
T ss_pred -CHHHHHHHcCCCEEecCcccCCHHHHH---Hh---cCCCCEEEEeCCCHHHHH-HHhH--cCCCEEEECCccCCCCCCC
Confidence 356788899999999973 4333322 11 223345556666654432 3223 466665 333345665544
Q ss_pred C-CchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 234 I-SGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 234 ~-~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. +....+.++++++.. ++||++.+||+ ++++.++.+.|+|||.+||++.+
T Consensus 134 ~~~~~g~~~l~~~~~~~~~~pv~a~GGI~-~~~~~~~~~~G~~gva~~~~i~~ 185 (196)
T TIGR00693 134 PAPPAGVELLREIAATSIDIPIVAIGGIT-LENAAEVLAAGADGVAVVSAIMQ 185 (196)
T ss_pred CCCCCCHHHHHHHHHhcCCCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHhhC
Confidence 2 222346777777654 59999999996 89999999999999999999997
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.8e-10 Score=101.75 Aligned_cols=175 Identities=23% Similarity=0.269 Sum_probs=121.7
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
.+|| .+.++.+.+.|+|.+++- ..|| |. ..+.+ ++++++|.+.+ .|+.+-+
T Consensus 29 ~~dP-----~~~A~~~~~~ga~~lhiv------DLd~---------a~~g~~~n----~~~i~~i~~~~-~~v~vGG--- 80 (241)
T PRK14114 29 EKDP-----AELVEKLIEEGFTLIHVV------DLSK---------AIENSVEN----LPVLEKLSEFA-EHIQIGG--- 80 (241)
T ss_pred CCCH-----HHHHHHHHHCCCCEEEEE------ECCC---------cccCCcch----HHHHHHHHhhc-CcEEEec---
Confidence 4677 899999999999999994 2344 22 12223 46888888776 6888764
Q ss_pred chhccCH--HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe---------------CCCChHHHHHHHH
Q 021527 150 PILKRGV--DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT---------------TPTTPTDRMKAIV 212 (311)
Q Consensus 150 ~i~~~g~--~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li---------------sp~t~~eri~~i~ 212 (311)
|+ .+-++.+.++|++-+++.-..++....+.+. .+++-..++-+ +..++.+.++++.
T Consensus 81 -----GIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~-~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~ 154 (241)
T PRK14114 81 -----GIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFL-KEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLK 154 (241)
T ss_pred -----CCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHH-HHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHH
Confidence 33 2456778889999999987766665544444 55663433211 1223445566665
Q ss_pred HhC-CceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-----C-CcEEEEhhHhhc
Q 021527 213 EAS-EGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-----G-ADGVIVGSAMVK 284 (311)
Q Consensus 213 ~~a-~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-----G-ADGvIVGSaiv~ 284 (311)
+.. ..++|. ++..| +.++.+ .++++++++.+++||++++||++.+|+.++.+. | ++||||||||..
T Consensus 155 ~~g~~~ii~tdI~rdG---t~~G~d---~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~ 228 (241)
T PRK14114 155 EYGLEEIVHTEIEKDG---TLQEHD---FSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLE 228 (241)
T ss_pred hcCCCEEEEEeechhh---cCCCcC---HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHC
Confidence 554 345565 56555 223333 367888888889999999999999999999986 6 999999999987
Q ss_pred h
Q 021527 285 L 285 (311)
Q Consensus 285 ~ 285 (311)
-
T Consensus 229 g 229 (241)
T PRK14114 229 G 229 (241)
T ss_pred C
Confidence 3
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=108.54 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=119.8
Q ss_pred HHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 80 AEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
.+.++..+++|+|.+.+ |.|. |....| |.-.-+-.+.|+++++.+++||+... +.|.-
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~ps-d~~~~g-------------g~~Rm~~p~~I~aIk~~V~iPVigk~------Righ~ 86 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPA-DIRAAG-------------GVARMADPKMIEEIMDAVSIPVMAKA------RIGHF 86 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCc-hHhhcC-------------CeeecCCHHHHHHHHHhCCCCeEEee------hhhHH
Confidence 58889999999998877 7775 555555 22111225688899999999998853 34544
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe--------------
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS-------------- 223 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs-------------- 223 (311)
.-++.+.++|+|-+=-.+.+ .-+.++....+. .++..+++.-.+-.|-+.. ...||.++-+
T Consensus 87 ~Ea~~L~~~GvDiID~Te~l-rpad~~~~~~K~-~f~~~fmad~~~l~EAlra---i~~GadmI~Ttge~gtg~v~~av~ 161 (293)
T PRK04180 87 VEAQILEALGVDYIDESEVL-TPADEEYHIDKW-DFTVPFVCGARNLGEALRR---IAEGAAMIRTKGEAGTGNVVEAVR 161 (293)
T ss_pred HHHHHHHHcCCCEEeccCCC-CchHHHHHHHHH-HcCCCEEccCCCHHHHHHH---HHCCCCeeeccCCCCCccHHHHHH
Confidence 55678899999987222211 013345555544 3344444444444454433 3568777643
Q ss_pred -----------cCCccCCCCC----CCchHHHHHHHHhhcCCCcEE--EeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 224 -----------SIGVTGARAS----ISGHVQTLLREIKESSTKPVA--VGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 224 -----------~~G~TG~~~~----~~~~~~~~l~~vk~~~~~Pv~--vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..|.|..... ......++|+++++..++||+ +-+||.||+++.++.+.|||||+|||+|.+
T Consensus 162 h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 162 HMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred HHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 2333332200 111234789999998889997 999999999999999999999999999996
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-09 Score=96.21 Aligned_cols=173 Identities=18% Similarity=0.167 Sum_probs=123.2
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC----C
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM----S 139 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~----~ 139 (311)
.+++-+-.- +.+...+.+++|.++|+..+|+- |+.| +.++.+++++++. +
T Consensus 14 ~vi~vir~~--~~~~a~~~~~al~~~Gi~~iEit--~~~~----------------------~a~~~i~~l~~~~~~~p~ 67 (213)
T PRK06552 14 GVVAVVRGE--SKEEALKISLAVIKGGIKAIEVT--YTNP----------------------FASEVIKELVELYKDDPE 67 (213)
T ss_pred CEEEEEECC--CHHHHHHHHHHHHHCCCCEEEEE--CCCc----------------------cHHHHHHHHHHHcCCCCC
Confidence 366655433 56999999999999999999994 3433 2356777877664 3
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+-|..-+-.| .+-++.+.++|++=++-|.+.. ++.+.|+++|+..++.+. |+.|-... ...|+.
T Consensus 68 ~~vGaGTV~~-------~~~~~~a~~aGA~FivsP~~~~----~v~~~~~~~~i~~iPG~~--T~~E~~~A---~~~Gad 131 (213)
T PRK06552 68 VLIGAGTVLD-------AVTARLAILAGAQFIVSPSFNR----ETAKICNLYQIPYLPGCM--TVTEIVTA---LEAGSE 131 (213)
T ss_pred eEEeeeeCCC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHcCCCEECCcC--CHHHHHHH---HHcCCC
Confidence 4455544333 4567889999999998887753 366778999998887653 54444332 236666
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
|+-- +. .+ .. . .++++.++...+ +|++.-+||+ ++|+.++++.|+|++.+||.+++...
T Consensus 132 ~vkl-FP-a~---~~--G-~~~ik~l~~~~p~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~~~ 191 (213)
T PRK06552 132 IVKL-FP-GS---TL--G-PSFIKAIKGPLPQVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELNKLAS 191 (213)
T ss_pred EEEE-CC-cc---cC--C-HHHHHHHhhhCCCCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHhCccc
Confidence 6631 21 01 11 1 367888888764 9999999997 89999999999999999999987653
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-10 Score=102.23 Aligned_cols=176 Identities=14% Similarity=0.179 Sum_probs=118.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+|.|.+= |=-.+| -..|.+ +++++++.+..++|+++-+-.+. .+-
T Consensus 33 ~~~a~~~~~~g~~~l~i~----Dl~~~~----------~~~~~n----~~~i~~i~~~~~~pv~~gGGi~s------~~d 88 (258)
T PRK01033 33 INAVRIFNEKEVDELIVL----DIDASK----------RGSEPN----YELIENLASECFMPLCYGGGIKT------LEQ 88 (258)
T ss_pred HHHHHHHHHcCCCEEEEE----ECCCCc----------CCCccc----HHHHHHHHHhCCCCEEECCCCCC------HHH
Confidence 899999999999999993 211221 012334 46888888888999988653221 234
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE-EEe--------------------CCCChHHHHHHHHHhCCc-
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV-LFT--------------------TPTTPTDRMKAIVEASEG- 217 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I-~li--------------------sp~t~~eri~~i~~~a~g- 217 (311)
++.+.+.|++++++.-..++....+.+.+++++=..+ .-+ ++..+.+.++.+.+..-+
T Consensus 89 ~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ 168 (258)
T PRK01033 89 AKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGE 168 (258)
T ss_pred HHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCE
Confidence 5566688999999986555655556666666652212 111 233344555555454334
Q ss_pred eEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhHhhch
Q 021527 218 FVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA-GWGADGVIVGSAMVKL 285 (311)
Q Consensus 218 fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSaiv~~ 285 (311)
++|. ++..| ...+. ..++++++++.+++||++++||++.+++.+++ +.|+|||++|++|.-.
T Consensus 169 ii~~~i~~~G---~~~G~---d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 169 ILLNSIDRDG---TMKGY---DLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred EEEEccCCCC---CcCCC---CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 3333 33333 22232 24678999998999999999999999999998 7999999999999874
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-09 Score=102.83 Aligned_cols=170 Identities=18% Similarity=0.257 Sum_probs=115.9
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC--CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY--SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf--sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
..++.=+. |. +.+.+.+.++.+++.|+|+|||.+.. .+|-..|... .+.+.++++.+++.+++
T Consensus 100 ~pvi~si~-g~-~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~-------------~~~~~eiv~~v~~~~~i 164 (325)
T cd04739 100 IPVIASLN-GV-SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEV-------------EQRYLDILRAVKSAVTI 164 (325)
T ss_pred CeEEEEeC-CC-CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchH-------------HHHHHHHHHHHHhccCC
Confidence 44555553 43 44889999999999999999997743 4553333211 12456788999988899
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
||++-.--| + ..+.++++.+.++|+||+++..--.. ..++ . +..+ +
T Consensus 165 Pv~vKl~p~--~-~~~~~~a~~l~~~Gadgi~~~nt~~~-----------~~id------~----~~~~----------~ 210 (325)
T cd04739 165 PVAVKLSPF--F-SALAHMAKQLDAAGADGLVLFNRFYQ-----------PDID------L----ETLE----------V 210 (325)
T ss_pred CEEEEcCCC--c-cCHHHHHHHHHHcCCCeEEEEcCcCC-----------CCcc------c----cccc----------e
Confidence 999974222 1 24677888899999999988532100 0000 0 0000 0
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
....|.+|.. .-+...+++.++++.+++||+..+||.|++|+.+.+.+|||+|-|||+++.
T Consensus 211 -~~~~glSG~~--~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~ 271 (325)
T cd04739 211 -VPNLLLSSPA--EIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR 271 (325)
T ss_pred -ecCCCcCCcc--chhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh
Confidence 0012344432 223345789999988899999999999999999999999999999999987
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-09 Score=99.69 Aligned_cols=178 Identities=23% Similarity=0.295 Sum_probs=111.3
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+. +..+|++++=+-+=--|... +.+++++.+.. .+ +.++ -|
T Consensus 17 tgky~s~~~~~~a---i~asg~~ivTvalrR~~~~~-----------------~~~~~~~~i~~----~~--~~~l--pN 68 (250)
T PRK00208 17 TGKYPSPQVMQEA---IEASGAEIVTVALRRVNLGQ-----------------GGDNLLDLLPP----LG--VTLL--PN 68 (250)
T ss_pred cCCCCCHHHHHHH---HHHhCCCeEEEEEEeecCCC-----------------CcchHHhhccc----cC--CEEC--CC
Confidence 6778877766554 45599999988532222110 11344444432 12 2332 25
Q ss_pred chhccCHHHHHH---HHHHcCCcEE----EecC--CChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGL----VVPD--VPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGv----iipD--lp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+--.+..++-++ .+.+++-.-+ +++| ....+..+..+.++.. |+..+++++++. ...+++++. |
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~--~~ak~l~~~--G 144 (250)
T PRK00208 69 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDP--VLAKRLEEA--G 144 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHc--C
Confidence 554555555443 3455543222 2343 2233455566666666 999888998763 444455554 4
Q ss_pred eEEEE---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLV---SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+++ +..| || .++.. .++++.+++..++||+++.||++|+|+.++.+.|||||+|||++.+
T Consensus 145 ~~~vmPlg~pIG-sg--~gi~~--~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 145 CAAVMPLGAPIG-SG--LGLLN--PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred CCEeCCCCcCCC-CC--CCCCC--HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 44443 3333 44 34422 4678888888889999999999999999999999999999999997
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-09 Score=103.19 Aligned_cols=170 Identities=18% Similarity=0.274 Sum_probs=114.6
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
..++.=|. -.+.+.+.+.++.++++|+|+|||.+ |-.++-..|... .+.+.++++++++.+++
T Consensus 102 ~pvi~sI~--g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~-------------~~~~~eil~~v~~~~~i 166 (334)
T PRK07565 102 IPVIASLN--GSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEV-------------EQRYLDILRAVKSAVSI 166 (334)
T ss_pred CcEEEEec--cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccH-------------HHHHHHHHHHHHhccCC
Confidence 44555443 34568889999999999999999964 233443233211 12356889999998999
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
||++....| . ..+.++++.+.++|+|||.+..-.. ......+....
T Consensus 167 PV~vKl~p~--~-~~~~~~a~~l~~~G~dgI~~~n~~~---------------------~~~~d~~~~~~---------- 212 (334)
T PRK07565 167 PVAVKLSPY--F-SNLANMAKRLDAAGADGLVLFNRFY---------------------QPDIDLETLEV---------- 212 (334)
T ss_pred cEEEEeCCC--c-hhHHHHHHHHHHcCCCeEEEECCcC---------------------CCCcChhhccc----------
Confidence 999864222 1 2456788889999999997752100 00000011000
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
....|.+|. ..-+...+++.++++.+++||+..+||.|.+|+.+.+..|||+|-|||+++.
T Consensus 213 -~~~~glsg~--~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 213 -VPGLVLSTP--AELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLR 273 (334)
T ss_pred -ccCCCCCCc--hhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh
Confidence 001134443 2333445778899888899999999999999999999999999999999997
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-09 Score=98.77 Aligned_cols=177 Identities=18% Similarity=0.129 Sum_probs=122.9
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP 150 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~ 150 (311)
.||| .+.++.+.+.|+|.+++- ..|+ +...+.+ +++++++.+....|+.+-+=..
T Consensus 29 ~~dP-----~~~a~~~~~~ga~~lhiv------DLd~---------a~~~~~n----~~~i~~i~~~~~~~v~vGGGIr- 83 (232)
T PRK13586 29 LGNP-----IEIASKLYNEGYTRIHVV------DLDA---------AEGVGNN----EMYIKEISKIGFDWIQVGGGIR- 83 (232)
T ss_pred cCCH-----HHHHHHHHHCCCCEEEEE------ECCC---------cCCCcch----HHHHHHHHhhCCCCEEEeCCcC-
Confidence 3688 899999999999999994 2343 1112233 3688888774334988865221
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-eC---------------CCChHHHHHHHHHh
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-TT---------------PTTPTDRMKAIVEA 214 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-is---------------p~t~~eri~~i~~~ 214 (311)
..+-++.+.+.|++-+++.-..+++.+.+.+.++++|-+.|.+ +. .-++.+-++++.+.
T Consensus 84 -----s~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~ 158 (232)
T PRK13586 84 -----DIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNEL 158 (232)
T ss_pred -----CHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhc
Confidence 1245677888999999999888777777788888886433321 11 11334555555554
Q ss_pred C-CceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 215 S-EGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 215 a-~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. ..++|. ++..| +..+.+. ++++++++. ..|+++++||++.+|++++.+.|+|||+||+|+..
T Consensus 159 g~~~ii~tdI~~dG---t~~G~d~---el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 159 ELLGIIFTYISNEG---TTKGIDY---NVKDYARLI-RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred CCCEEEEecccccc---cCcCcCH---HHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 3 467777 66665 2234443 567777766 45699999999999999999999999999999985
|
|
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-09 Score=94.90 Aligned_cols=188 Identities=16% Similarity=0.117 Sum_probs=124.0
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP 141 (311)
+.++.=+ ..|+.++..++++.|.+ .+|++++|.|+ + +..| ++.++++|+. .+.|
T Consensus 4 ~~l~vAL--D~~~~~~a~~l~~~l~~-~v~~~kvG~~l---------~-------~~~G------~~~i~~lk~~~~~~~ 58 (216)
T PRK13306 4 PLLQIAL--DNQDLESAIEDAKKVAE-EVDIIEVGTIL---------L-------LAEG------MKAVRVLRALYPDKI 58 (216)
T ss_pred CcEEEEe--cCCCHHHHHHHHHHccc-cCCEEEEChHH---------H-------HHhC------HHHHHHHHHHCCCCE
Confidence 3344433 77899999999999876 58999999776 1 1122 4577788876 5677
Q ss_pred EEEEecCcchhccCHHHHHH-HHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 142 IALFTYYNPILKRGVDNFMS-TVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~-~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
|.+..-.. .+.+++. .+.++|+|.+.++-....+ ..+..+.++++|.....-+.|.++.++++..... +..
T Consensus 59 v~~DLK~~-----Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~--~~~ 131 (216)
T PRK13306 59 IVADTKIA-----DAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDA--GIS 131 (216)
T ss_pred EEEEEeec-----CCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcC--Chh
Confidence 76643222 2234554 5889999999998655444 6667777788887655556677788888754332 332
Q ss_pred EE---EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 220 YL---VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 220 Y~---vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
++ .+.....+.. ...+...+.++++++. +.-+.|.+||+ ++++..+.+.|||.+|||++|.+.
T Consensus 132 ~~vl~~a~~~~~~G~-v~s~~~~~~ir~~~~~-~~~i~V~gGI~-~~~~~~~~~~~ad~~VvGr~I~~a 197 (216)
T PRK13306 132 QVIYHRSRDAQLAGV-AWGEKDLNKVKKLSDM-GFKVSVTGGLV-VEDLKLFKGIPVKTFIAGRAIRGA 197 (216)
T ss_pred hhhhhhhhhhhhcCC-CCCHHHHHHHHHHhcC-CCeEEEcCCCC-HhhHHHHhcCCCCEEEECCcccCC
Confidence 33 2322111111 2233334456666542 34489999997 788888899999999999998873
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.2e-09 Score=99.33 Aligned_cols=177 Identities=21% Similarity=0.261 Sum_probs=116.2
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
...+++=|... +.+.+.+.++.++++|+|+|||. |+-|...+ +--..|.+.+.+.++++.+|+.+++|
T Consensus 89 ~~p~ivsi~g~--~~~~~~~~a~~~~~~G~d~iElN--~~cP~~~~--------~g~~~~~~~~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 89 GTPVIASIAGS--TVEEFVEVAEKLADAGADAIELN--ISCPNVKG--------GGMAFGTDPEAVAEIVKAVKKATDVP 156 (296)
T ss_pred CCcEEEEEecC--CHHHHHHHHHHHHHcCCCEEEEE--CCCCCCCC--------CcccccCCHHHHHHHHHHHHhccCCC
Confidence 34465555433 35899999999999999999997 45555432 01123456677788999999888999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.+ . ....++++.+.++|+|++.+.+-.. |.. +...+.... + ..+
T Consensus 157 v~vKl~~~--~-~~~~~~a~~~~~~G~d~i~~~nt~~-------------g~~----~~~~~~~~~---~---~~~---- 206 (296)
T cd04740 157 VIVKLTPN--V-TDIVEIARAAEEAGADGLTLINTLK-------------GMA----IDIETRKPI---L---GNV---- 206 (296)
T ss_pred EEEEeCCC--c-hhHHHHHHHHHHcCCCEEEEECCCc-------------ccc----cccccCcee---e---cCC----
Confidence 98853222 1 1234667777888888876653211 000 011110000 0 000
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+...++++++++.+++||+..+||.+++++.+++..|||+|-||++++.
T Consensus 207 --~gg~sg~--~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~ 265 (296)
T cd04740 207 --TGGLSGP--AIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV 265 (296)
T ss_pred --cceecCc--ccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc
Confidence 0123332 2233345789999998899999999999999999999999999999999987
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-08 Score=91.70 Aligned_cols=170 Identities=19% Similarity=0.231 Sum_probs=118.0
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--E
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--I 142 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--i 142 (311)
+++-+- ..+.+...+.++++.++|+..+|+- +++| +.++.+++++++...+ |
T Consensus 12 ~~~v~r--~~~~~~~~~~~~a~~~gGi~~iEvt--~~~~----------------------~~~~~i~~l~~~~~~~~~i 65 (206)
T PRK09140 12 LIAILR--GITPDEALAHVGALIEAGFRAIEIP--LNSP----------------------DPFDSIAALVKALGDRALI 65 (206)
T ss_pred EEEEEe--CCCHHHHHHHHHHHHHCCCCEEEEe--CCCc----------------------cHHHHHHHHHHHcCCCcEE
Confidence 555443 3466999999999999999999995 3443 1234677777665434 4
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
..-+-.+ .+-++.+.++|+++++.|-... ++.+.++..|+..++- ..|+.|-. +. ...|..|+.
T Consensus 66 GaGTV~~-------~~~~~~a~~aGA~fivsp~~~~----~v~~~~~~~~~~~~~G--~~t~~E~~-~A--~~~Gad~vk 129 (206)
T PRK09140 66 GAGTVLS-------PEQVDRLADAGGRLIVTPNTDP----EVIRRAVALGMVVMPG--VATPTEAF-AA--LRAGAQALK 129 (206)
T ss_pred eEEecCC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHCCCcEEcc--cCCHHHHH-HH--HHcCCCEEE
Confidence 4433332 5678899999999999986543 3455567778765554 55665533 22 235666663
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+. ++ ... .++++.+++.. ++|+++=+||+ ++|+.++++.|+|++.|||++.+.
T Consensus 130 -~Fp-a~---~~G---~~~l~~l~~~~~~~ipvvaiGGI~-~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 130 -LFP-AS---QLG---PAGIKALRAVLPPDVPVFAVGGVT-PENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred -ECC-CC---CCC---HHHHHHHHhhcCCCCeEEEECCCC-HHHHHHHHHCCCeEEEEehHhccc
Confidence 121 11 122 36788888876 49999999995 899999999999999999999984
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-09 Score=98.11 Aligned_cols=175 Identities=17% Similarity=0.067 Sum_probs=121.7
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+..+++- ..|| +...+.| +++++++.+.+.+|+.+-+=.. . .+-
T Consensus 34 ~~~a~~~~~~g~~~lhiv------DLd~---------a~g~~~n----~~~i~~i~~~~~~~v~vgGGIr-----s-~e~ 88 (243)
T TIGR01919 34 ESAAKWWEQGGAEWIHLV------DLDA---------AFGGGNN----EMMLEEVVKLLVVVEELSGGRR-----D-DSS 88 (243)
T ss_pred HHHHHHHHhCCCeEEEEE------ECCC---------CCCCcch----HHHHHHHHHHCCCCEEEcCCCC-----C-HHH
Confidence 577788899999999996 4455 2223334 3588888888889998865221 1 345
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe------------------CCCChHHHHHHHHHhC-CceEE
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT------------------TPTTPTDRMKAIVEAS-EGFVY 220 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li------------------sp~t~~eri~~i~~~a-~gfiY 220 (311)
++.+.+.|++-+++.-..++....+.+.++.+|=..+.-+ +..++.+-++++.+.. ..++|
T Consensus 89 ~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~ 168 (243)
T TIGR01919 89 LRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVV 168 (243)
T ss_pred HHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEE
Confidence 6678889999999987777666666666666653222211 1222345566665543 45666
Q ss_pred E-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH---HcCCcEEEEhhHhhch
Q 021527 221 L-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA---GWGADGVIVGSAMVKL 285 (311)
Q Consensus 221 ~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~---~~GADGvIVGSaiv~~ 285 (311)
. ++..|+ ..+.+ .++++++++.+++||++++||++.||+.++. +.|+||||||+||...
T Consensus 169 tdI~~dGt---~~G~d---~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 169 TDSKKDGL---SGGPN---ELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYAR 231 (243)
T ss_pred EecCCccc---CCCcC---HHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcC
Confidence 6 555553 23433 3678888888899999999999999999986 4599999999999873
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-08 Score=91.76 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=112.9
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
.|+..++ .+.++.+.++|+++|+| +++-++...... ....+.++.++.++|+++.
T Consensus 15 ly~i~~~------~~~l~~~l~~G~~~vqL----R~k~~~~~~~~~--------------la~~l~~~~~~~~~~liIn- 69 (211)
T PRK03512 15 LYPVVDS------VQWIERLLDAGVRTLQL----RIKDRRDEEVEA--------------DVVAAIALGRRYQARLFIN- 69 (211)
T ss_pred EEEEECC------HHHHHHHHhCCCCEEEE----cCCCCCHHHHHH--------------HHHHHHHHHHHhCCeEEEe-
Confidence 4666554 25688999999999999 566565533322 1223334445678999983
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE--
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-- 222 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-- 222 (311)
++.+.+.+.|+|||+++ |+|..+..+. .|-..++-++..+..+ +.+. ...|..|+.
T Consensus 70 -----------d~~~lA~~~~adGVHlg~~d~~~~~~r~~------~~~~~~iG~S~H~~~e-~~~A--~~~gaDYi~lg 129 (211)
T PRK03512 70 -----------DYWRLAIKHQAYGVHLGQEDLETADLNAI------RAAGLRLGVSTHDDME-IDVA--LAARPSYIALG 129 (211)
T ss_pred -----------CHHHHHHHcCCCEEEcChHhCCHHHHHHh------cCCCCEEEEeCCCHHH-HHHH--hhcCCCEEEEC
Confidence 45777888999999997 6765444321 2445566666666544 3332 235667773
Q ss_pred ecCCccCCCCC-CCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 223 SSIGVTGARAS-ISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~-~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.. .|-++.+ .++--.+.++++++. .++||++=+||+ ++++.++...|++||.|-|+|.+
T Consensus 130 pvf-~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisai~~ 191 (211)
T PRK03512 130 HVF-PTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLATGVGSIAVVSAITQ 191 (211)
T ss_pred Ccc-CCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhHhhC
Confidence 333 3444432 222223456666655 589999999997 89999999999999999999996
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-10 Score=103.11 Aligned_cols=182 Identities=23% Similarity=0.301 Sum_probs=122.3
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
+...++| .+.++.+.+.|+|.+++- ..|| +. .| -..-++.++++.+++.+|+.+-+=
T Consensus 25 ~~~~~dP-----~~~a~~~~~~g~~~l~iv------DLda---------a~-~g--~~~n~~~i~~i~~~~~~~i~vgGG 81 (229)
T PF00977_consen 25 TVYSGDP-----VEVAKAFNEQGADELHIV------DLDA---------AK-EG--RGSNLELIKEIAKETGIPIQVGGG 81 (229)
T ss_dssp ECECCCH-----HHHHHHHHHTT-SEEEEE------EHHH---------HC-CT--HHHHHHHHHHHHHHSSSEEEEESS
T ss_pred eEECcCH-----HHHHHHHHHcCCCEEEEE------EccC---------cc-cC--chhHHHHHHHHHhcCCccEEEeCc
Confidence 4456777 899999999999999994 1222 11 11 112357889999888899999763
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-eC----------------CCChHHHHHH
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-TT----------------PTTPTDRMKA 210 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-is----------------p~t~~eri~~ 210 (311)
.. ..+-++.+.+.|++-+++.-..++....+.+.++++|-+.|.+ +. ..++.+.+++
T Consensus 82 Ir------s~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~ 155 (229)
T PF00977_consen 82 IR------SIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKR 155 (229)
T ss_dssp E-------SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHH
T ss_pred cC------cHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHH
Confidence 21 1345678899999999998655555555667777777633322 11 1223455666
Q ss_pred HHHhC-CceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 211 IVEAS-EGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 211 i~~~a-~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.+.. ..++|. ++..| +.++.+ .++++++++.++.|+++++||++.+|+.++.+.|+|||+|||||..
T Consensus 156 ~~~~g~~~ii~tdi~~dG---t~~G~d---~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 156 LEELGAGEIILTDIDRDG---TMQGPD---LELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp HHHTT-SEEEEEETTTTT---TSSS-----HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred HHhcCCcEEEEeeccccC---CcCCCC---HHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 65554 345555 44444 333333 3678899888899999999999999999999999999999999965
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4e-09 Score=96.57 Aligned_cols=168 Identities=18% Similarity=0.263 Sum_probs=114.8
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+. +|.+++- -.|| ++ ..+.| ++.++++++..++|+.+-+=.+ ..+
T Consensus 33 ~~~a~~~~~~-~~~l~iv------Dldg---------a~~g~~~n----~~~i~~i~~~~~~pv~~gGGIr------s~e 86 (228)
T PRK04128 33 VEIALRFSEY-VDKIHVV------DLDG---------AFEGKPKN----LDVVKNIIRETGLKVQVGGGLR------TYE 86 (228)
T ss_pred HHHHHHHHHh-CCEEEEE------ECcc---------hhcCCcch----HHHHHHHHhhCCCCEEEcCCCC------CHH
Confidence 7888888888 9988882 2355 22 11234 4688888888899999865322 135
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe---------------CCCChHHHHHHHHHhCCceEEE-E
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT---------------TPTTPTDRMKAIVEASEGFVYL-V 222 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li---------------sp~t~~eri~~i~~~a~gfiY~-v 222 (311)
.++.+.+.|++++++.-..+ +...+.+.++++| +.++-+ +..++.+-++.+.+....++|. +
T Consensus 87 dv~~l~~~G~~~vivGtaa~-~~~~l~~~~~~~g-~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~t~i 164 (228)
T PRK04128 87 SIKDAYEIGVENVIIGTKAF-DLEFLEKVTSEFE-GITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNYVNRFIYTSI 164 (228)
T ss_pred HHHHHHHCCCCEEEECchhc-CHHHHHHHHHHcC-CEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHHhCEEEEEec
Confidence 67778889999999987666 5555666777776 433311 2333345555555555677777 5
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+..|+ .++.+ ++.+. ..++||++++||++.||+.++.+.|+|||+|||+|...
T Consensus 165 ~~dGt---~~G~d----~l~~~---~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 165 ERDGT---LTGIE----EIERF---WGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred cchhc---ccCHH----HHHHh---cCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 65552 22322 22222 24799999999999999999999999999999999873
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.9e-09 Score=97.38 Aligned_cols=184 Identities=17% Similarity=0.159 Sum_probs=118.0
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLA-DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
..+|+=+. |..+.+.+.+.++.+++.|+|+|||.+-...+.. .|. - ..-+.+.+.+.++++.+++.+++|
T Consensus 100 ~p~i~si~-G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~------G--~~l~~~~~~~~~iv~~v~~~~~~P 170 (299)
T cd02940 100 KILIASIM-CEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGM------G--AAVGQDPELVEEICRWVREAVKIP 170 (299)
T ss_pred CeEEEEec-CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCC------c--hhhccCHHHHHHHHHHHHHhcCCC
Confidence 34554444 4346689999999999999999999654433311 110 0 011235567778899999888999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.|. ..+.++++.+.++|+||+++.+-... ..++ .+++. +.........+
T Consensus 171 v~vKl~~~~---~~~~~~a~~~~~~Gadgi~~~Nt~~~----------~~~i------d~~~~--~~~~~~~~~~~---- 225 (299)
T cd02940 171 VIAKLTPNI---TDIREIARAAKEGGADGVSAINTVNS----------LMGV------DLDGT--PPAPGVEGKTT---- 225 (299)
T ss_pred eEEECCCCc---hhHHHHHHHHHHcCCCEEEEeccccc----------cccc------ccccC--CccccccCCCC----
Confidence 998753321 14567888899999999887532100 0011 11110 00000000000
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+-..+.+.++++.+ ++||+..+||++.+|+.+.+.+|||+|-|||+++.
T Consensus 226 --~gg~sG~--a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 226 --YGGYSGP--AVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred --cCcccCC--CcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 1134443 23334467899999988 89999999999999999999999999999999887
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.6e-09 Score=95.38 Aligned_cols=179 Identities=22% Similarity=0.284 Sum_probs=109.9
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+ .+..+|++++=+-+==-|.. ....+++++.+.. .+ +.++ -|
T Consensus 16 tgky~s~~~~~~---ai~aSg~~ivTva~rR~~~~----------------~~~~~~~~~~i~~----~~--~~~l--pN 68 (248)
T cd04728 16 TGKYPSPAIMKE---AIEASGAEIVTVALRRVNIG----------------DPGGESFLDLLDK----SG--YTLL--PN 68 (248)
T ss_pred cCCCCCHHHHHH---HHHHhCCCEEEEEEEecccC----------------CCCcchHHhhccc----cC--CEEC--CC
Confidence 667777666555 45559999998853222210 1122334444422 12 2332 25
Q ss_pred chhccCHHHHHH---HHHHcCCcEE----EecC--CChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGL----VVPD--VPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGv----iipD--lp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+--.+..++-++ .+.+++-.-+ +++| ..+.+..+..+.++.. |+..+++++++. ...+.+.+. |
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~--~~ar~l~~~--G 144 (248)
T cd04728 69 TAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDP--VLAKRLEDA--G 144 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHc--C
Confidence 444455555443 3455543222 2343 1123445556666666 999998998763 444455554 4
Q ss_pred eEEEEe---cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVS---SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs---~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+++. ..| || .++.. .++|+.+++..++||+++.||++|+|+.++.+.|||||+|||++.+
T Consensus 145 ~~~vmPlg~pIG-sg--~Gi~~--~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 145 CAAVMPLGSPIG-SG--QGLLN--PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CCEeCCCCcCCC-CC--CCCCC--HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 444443 333 44 34422 5788899888889999999999999999999999999999999997
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=98.27 Aligned_cols=179 Identities=21% Similarity=0.253 Sum_probs=111.4
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
+...||| .+.++.+.+.|+|.+++- ..|| +...+.+ +++++++.+. +|+.+-+=
T Consensus 32 ~~~~~dP-----~~~a~~~~~~g~~~l~iv------DLd~---------~~~~~~n----~~~i~~i~~~--~~v~vgGG 85 (221)
T TIGR00734 32 SRLSSSP-----DDAAKVIEEIGARFIYIA------DLDR---------IVGLGDN----FSLLSKLSKR--VELIADCG 85 (221)
T ss_pred eecCCCH-----HHHHHHHHHcCCCEEEEE------Eccc---------ccCCcch----HHHHHHHHhh--CcEEEcCc
Confidence 3456888 899999999999999994 2344 1112233 4688888776 48777652
Q ss_pred CcchhccCHHHHHHHHHH--cCCcEEEecCCChhhHHHHHHHHHHcCCCeE--EEeCC---CChHHHHHHHHHhCCceEE
Q 021527 148 YNPILKRGVDNFMSTVRD--IGIRGLVVPDVPLEETESLQKEAMKNKIELV--LFTTP---TTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~--aGadGviipDlp~ee~~~~~~~~~~~gi~~I--~lisp---~t~~eri~~i~~~a~gfiY 220 (311)
.. ..+ -++.+.. .|++-+++.-..+++...+.+.+.-..++.- .+... .+..+..+.+.....+++|
T Consensus 86 ir-----s~e-~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~~~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~~ii~ 159 (221)
T TIGR00734 86 VR-----SPE-DLETLPFTLEFASRVVVATETLDITELLRECYTVVSLDFKEKFLDASGLFESLEEVRDFLNSFDYGLIV 159 (221)
T ss_pred cC-----CHH-HHHHHHhhhccceEEeecChhhCCHHHHHHhhhEEEEEeECCccccccccccHHHHHHHHHhcCCEEEE
Confidence 21 122 2444422 3699998887766655544444311111110 00000 1122223333222236777
Q ss_pred E-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 221 L-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 221 ~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. ++.. |+..+.+ .++++++++.+++|+++++||++++|++++.+.|||||+|||+|..
T Consensus 160 tdI~~d---Gt~~G~d---~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 160 LDIHSV---GTMKGPN---LELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred EECCcc---ccCCCCC---HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 5 3443 3333333 4788999888899999999999999999999999999999999975
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-08 Score=88.77 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=116.7
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
.+++-+. .++.+...+.++.+.++|++++|+= +++| +..+.++.++++++... +
T Consensus 13 ~~~~v~r--~~~~~~~~~~~~~~~~~Gv~~vqlr--~k~~-------------------~~~e~~~~~~~~~~~~~--~- 66 (187)
T PRK07455 13 RAIAVIR--APDLELGLQMAEAVAAGGMRLIEIT--WNSD-------------------QPAELISQLREKLPECI--I- 66 (187)
T ss_pred CEEEEEE--cCCHHHHHHHHHHHHHCCCCEEEEe--CCCC-------------------CHHHHHHHHHHhCCCcE--E-
Confidence 3555554 3466899999999999999999993 2222 12234445555543221 1
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+.++++. .+.++.+.++|+||++.|.+..+ ..+.++.+++..++- ..|+.|-.+. ...|+.|+--
T Consensus 67 ---g~gtvl~---~d~~~~A~~~gAdgv~~p~~~~~----~~~~~~~~~~~~i~G--~~t~~e~~~A---~~~Gadyv~~ 131 (187)
T PRK07455 67 ---GTGTILT---LEDLEEAIAAGAQFCFTPHVDPE----LIEAAVAQDIPIIPG--ALTPTEIVTA---WQAGASCVKV 131 (187)
T ss_pred ---eEEEEEc---HHHHHHHHHcCCCEEECCCCCHH----HHHHHHHcCCCEEcC--cCCHHHHHHH---HHCCCCEEEE
Confidence 1223322 47889999999999999987633 445567788876655 3555554322 2367777742
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+. |.. ..-.++++.+++.. ++|+++=+||+ ++|+.++++.|||||.|||++.+
T Consensus 132 -Fp-t~~-----~~G~~~l~~~~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 132 -FP-VQA-----VGGADYIKSLQGPLGHIPLIPTGGVT-LENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred -Cc-CCc-----ccCHHHHHHHHhhCCCCcEEEeCCCC-HHHHHHHHHCCCeEEEEehhccc
Confidence 22 211 11246899999887 69999999995 89999999999999999999986
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-08 Score=94.17 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=127.4
Q ss_pred EEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 66 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 66 i~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
..|-..++| .+.++.+.+.|++++|+- ..|| ..+.+ ++.+++|++ +++||-+-
T Consensus 37 ~~y~~~~dP-----~~~A~~~~~~Ga~~lHvV------DLdg-----------g~~~n----~~~i~~i~~-~~~~vqvG 89 (262)
T PLN02446 37 TNFESDKSA-----AEFAEMYKRDGLTGGHVI------MLGA-----------DDASL----AAALEALRA-YPGGLQVG 89 (262)
T ss_pred EEeCCCCCH-----HHHHHHHHHCCCCEEEEE------ECCC-----------CCccc----HHHHHHHHh-CCCCEEEe
Confidence 345556788 899999999999999995 3355 11223 468888888 88999887
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhh----HHHHHHHHHHcCCCeEEE-e-------------------CC
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE----TESLQKEAMKNKIELVLF-T-------------------TP 201 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee----~~~~~~~~~~~gi~~I~l-i-------------------sp 201 (311)
|=.+ . +-++.+.+.|++-|++.-+.+++ ...+.+.++++|-+.|.+ + +.
T Consensus 90 GGIR------~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~ 162 (262)
T PLN02446 90 GGVN------S-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSD 162 (262)
T ss_pred CCcc------H-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCC
Confidence 6321 2 45677889999999998877776 677788888887433322 1 12
Q ss_pred CChHHHHHHHHHh-CCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc--CCcEEE
Q 021527 202 TTPTDRMKAIVEA-SEGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW--GADGVI 277 (311)
Q Consensus 202 ~t~~eri~~i~~~-a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~--GADGvI 277 (311)
.++.+.+.+..+. ...|+|. ++..|+ ..+.+ .++++++++.+++||++.+||++.+|+.++.+. |.+|+|
T Consensus 163 ~~~~e~~~~~~~~g~~eii~TdI~rDGt---l~G~d---~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvI 236 (262)
T PLN02446 163 LAVDEETLEFLAAYCDEFLVHGVDVEGK---RLGID---EELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVT 236 (262)
T ss_pred CCHHHHHHHHHHhCCCEEEEEEEcCCCc---ccCCC---HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEE
Confidence 2333444444443 4567777 666552 33333 367888888899999999999999999999997 579999
Q ss_pred EhhHhh
Q 021527 278 VGSAMV 283 (311)
Q Consensus 278 VGSaiv 283 (311)
||+|+.
T Consensus 237 vGkAl~ 242 (262)
T PLN02446 237 VGSALD 242 (262)
T ss_pred EEeeHH
Confidence 999993
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-08 Score=90.63 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=114.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~ 153 (311)
+.+...+.++.+.++|+++||+- +++| ...+.++.++++. ++++...+-.+
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~--~~~~----------------------~~~~~i~~l~~~~~~~~iGag~v~~---- 65 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEIT--LRTP----------------------GALEAIRALRKEFPEALIGAGTVLT---- 65 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe--CCCh----------------------hHHHHHHHHHHHCCCCEEEEEeCCC----
Confidence 35888999999999999999995 2221 1234677777664 35555543221
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS 233 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~ 233 (311)
.+-++.+.++|+|+++.|... .++.+.++++|+..++-++ |+.| +.+. ...|+.|+.- .. .
T Consensus 66 ---~~~~~~a~~~Ga~~i~~p~~~----~~~~~~~~~~~~~~i~gv~--t~~e-~~~A--~~~Gad~i~~-~p---~--- 126 (190)
T cd00452 66 ---PEQADAAIAAGAQFIVSPGLD----PEVVKAANRAGIPLLPGVA--TPTE-IMQA--LELGADIVKL-FP---A--- 126 (190)
T ss_pred ---HHHHHHHHHcCCCEEEcCCCC----HHHHHHHHHcCCcEECCcC--CHHH-HHHH--HHCCCCEEEE-cC---C---
Confidence 456788999999999988543 3466777888887766554 5544 3333 2367777642 11 1
Q ss_pred CCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 234 ISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
++...++++.+++.. ++|+++-+|| +++++.++++.|+|++.+||.+.+.
T Consensus 127 -~~~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~~~ 177 (190)
T cd00452 127 -EAVGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLPKD 177 (190)
T ss_pred -cccCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcchh
Confidence 111346888888876 5999999999 6999999999999999999999853
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.1e-08 Score=87.92 Aligned_cols=193 Identities=19% Similarity=0.212 Sum_probs=128.9
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPi 142 (311)
.+++-+- .++.++..+.+++|.++|+++||++ ++.| +.++.+++++++. ++-|
T Consensus 16 ~~iaV~r--~~~~~~a~~i~~al~~~Gi~~iEit--l~~~----------------------~~~~~I~~l~~~~p~~~I 69 (212)
T PRK05718 16 PVVPVIV--INKLEDAVPLAKALVAGGLPVLEVT--LRTP----------------------AALEAIRLIAKEVPEALI 69 (212)
T ss_pred CEEEEEE--cCCHHHHHHHHHHHHHcCCCEEEEe--cCCc----------------------cHHHHHHHHHHHCCCCEE
Confidence 3555554 4567999999999999999999998 5544 2245777777653 3445
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
+.-+-.+ .+-++.+.++|++=++.|.+.. ++.+.|+++|+..++-+ .|+.| +....+..-.++-+-
T Consensus 70 GAGTVl~-------~~~a~~a~~aGA~FivsP~~~~----~vi~~a~~~~i~~iPG~--~TptE-i~~a~~~Ga~~vKlF 135 (212)
T PRK05718 70 GAGTVLN-------PEQLAQAIEAGAQFIVSPGLTP----PLLKAAQEGPIPLIPGV--STPSE-LMLGMELGLRTFKFF 135 (212)
T ss_pred EEeeccC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHcCCCEeCCC--CCHHH-HHHHHHCCCCEEEEc
Confidence 5544333 3568889999999999998753 46677888998887654 35545 444434333333332
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHH
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~ 301 (311)
.. +..| . ..+++.++... ++|++.-+||+ ++++.+.++.|+..++.||.+++.-.- .+...+++++
T Consensus 136 Pa-~~~g-----g---~~~lk~l~~p~p~~~~~ptGGV~-~~ni~~~l~ag~v~~vggs~L~~~~~~---~~~~~~~i~~ 202 (212)
T PRK05718 136 PA-EASG-----G---VKMLKALAGPFPDVRFCPTGGIS-PANYRDYLALPNVLCIGGSWMVPKDAI---ENGDWDRITR 202 (212)
T ss_pred cc-hhcc-----C---HHHHHHHhccCCCCeEEEeCCCC-HHHHHHHHhCCCEEEEEChHhCCcchh---ccccHHHHHH
Confidence 10 1111 1 26788888865 69999999997 799999999997777778998752110 1223456666
Q ss_pred HHHHHHhh
Q 021527 302 FAKSLKSA 309 (311)
Q Consensus 302 ~~~~l~~~ 309 (311)
.++++.+.
T Consensus 203 ~a~~~~~~ 210 (212)
T PRK05718 203 LAREAVAL 210 (212)
T ss_pred HHHHHHHh
Confidence 66665443
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-08 Score=101.18 Aligned_cols=179 Identities=21% Similarity=0.216 Sum_probs=119.1
Q ss_pred EEEEEeCCCCC----hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 65 LIPYITAGDPD----LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 65 li~yi~~G~P~----~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
+-.|++..+.. .+.+.+.++.+.++|+++|.| +++-.|...+.+. .+.+.++.++.++
T Consensus 291 ~~ly~it~~~~~~~~~~~~~~~l~~~l~~Gv~~vql----R~k~~~~~~~~~~--------------a~~l~~~~~~~~~ 352 (502)
T PLN02898 291 LFLYAVTDSGMNKKWGRSTVDAVRAAIEGGATIVQL----REKEAETREFIEE--------------AKACLAICRSYGV 352 (502)
T ss_pred ceEEEEECccccccccchHHHHHHHHHHcCCCEEEE----ccCCCCHHHHHHH--------------HHHHHHHHHHhCC
Confidence 33466544322 145778899999999999999 4555554333221 1223333345678
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
++++ .++.+.+.+.|+|||+++ |++..+..+ ..+-+.++-++..+.++- ... ...|+
T Consensus 353 ~lii------------nd~~~lA~~~~adGvHl~~~d~~~~~~r~------~~~~~~~iG~S~h~~~e~-~~a--~~~ga 411 (502)
T PLN02898 353 PLLI------------NDRVDVALACDADGVHLGQSDMPVRLARS------LLGPGKIIGVSCKTPEQA-EQA--WKDGA 411 (502)
T ss_pred EEEE------------cChHHHHHhcCCCEEEeChHhcCHHHHHH------hcCCCCEEEEeCCCHHHH-HHH--hhcCC
Confidence 8888 345777888999999997 666444332 235556776777776553 232 23566
Q ss_pred EEEE--ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCc---EEEEhhHhhc
Q 021527 219 VYLV--SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGAD---GVIVGSAMVK 284 (311)
Q Consensus 219 iY~v--s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GAD---GvIVGSaiv~ 284 (311)
.|+. +.. .|.++...++--.+.++.+++..++||++=+||+ ++++.++.+.|+| ||.|+|++.+
T Consensus 412 dyi~~gpif-~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 412 DYIGCGGVF-PTNTKANNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred CEEEECCee-cCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHHHcCCCcCceEEEEeHHhc
Confidence 6662 333 3555443333335778888888899999999996 8999999999999 9999999986
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=96.73 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
.+.+.++.+.++|++.|++ ++|-+|-..+.+ ..+.++++.+..++++++.
T Consensus 145 ~~~~~~~~~l~~g~~~vql----R~k~~~~~~~~~--------------~~~~l~~~~~~~~~~liin------------ 194 (312)
T PRK08999 145 AFLARLERALAAGIRLIQL----RAPQLPPAAYRA--------------LARAALGLCRRAGAQLLLN------------ 194 (312)
T ss_pred HHHHHHHHHHHCCCcEEEE----eCCCCCHHHHHH--------------HHHHHHHHHHHhCCEEEEE------------
Confidence 5678888888999999999 565444322221 2234444445678899984
Q ss_pred HHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCC
Q 021527 158 NFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASI 234 (311)
Q Consensus 158 ~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~ 234 (311)
++.+.+.+.|+|||+++ |++..+. ++.+-+.+..+|..+.++. .+.. ..|..|+. +-.-.|.++.+.
T Consensus 195 d~~~la~~~~~~GvHl~~~d~~~~~~-------r~~~~~~~ig~S~h~~~~~-~~a~--~~~~dyi~~gpvf~t~tk~~~ 264 (312)
T PRK08999 195 GDPELAEDLGADGVHLTSAQLAALAA-------RPLPAGRWVAASCHDAEEL-ARAQ--RLGVDFAVLSPVQPTASHPGA 264 (312)
T ss_pred CcHHHHHhcCCCEEEcChhhcChHhh-------ccCCCCCEEEEecCCHHHH-HHHH--hcCCCEEEECCCcCCCCCCCC
Confidence 35677888999999998 5654332 2235456776776666553 3322 34666662 322345555444
Q ss_pred CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
++--.+.++++++.+++||++=+|| +++++.++.+.|||||.+-|+|
T Consensus 265 ~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 265 APLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 4333567888888889999999999 5899999999999999998876
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-09 Score=92.49 Aligned_cols=177 Identities=18% Similarity=0.248 Sum_probs=112.4
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEe
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFT 146 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~ 146 (311)
+-...++.++.+++++.+.+. ++++|+|.|| + +..| .++++++|+...+| +-+|-
T Consensus 8 ~alD~~~~~~~~~~~~~~~~~-~~~vk~g~~l---------~-------~~~G------~~~v~~ir~~~~i~~D~k~~d 64 (215)
T PRK13813 8 LALDVTDRERALKIAEELDDY-VDAIKVGWPL---------V-------LASG------LGIIEELKRYAPVIADLKVAD 64 (215)
T ss_pred EEeCCCCHHHHHHHHHhcccc-CCEEEEcHHH---------H-------HhhC------HHHHHHHHhcCCEEEEeeccc
Confidence 345788899999999888654 7999999666 1 1122 35777887765555 33332
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCeEEEeCCCCh------HHHHHHHHHh--CCc
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIELVLFTTPTTP------TDRMKAIVEA--SEG 217 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~I~lisp~t~------~eri~~i~~~--a~g 217 (311)
..|+ .+.+++.+.++|+|.+.++=... +...++.+.++++|+.....+.|.++ .+.+..+... ..|
T Consensus 65 i~~~-----~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G 139 (215)
T PRK13813 65 IPNT-----NRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAG 139 (215)
T ss_pred cHHH-----HHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 2222 24466888899999999975442 33667888899999987766666542 1222222221 234
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc-EEEeeCCCCH-HHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKP-VAVGFGISKP-EHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P-v~vGfGIst~-e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|. |.. .++...+.++++|+..+.+ .++-+||+.. .++.++.+.|||++|+|+++.+
T Consensus 140 ~~---------g~~--~~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~ 197 (215)
T PRK13813 140 AF---------GVV--APATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKAGADYVIVGRSIYN 197 (215)
T ss_pred CC---------eEE--ECCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcCCCEEEECcccCC
Confidence 32 111 1111235577777765433 2266699742 1488999999999999999886
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=92.65 Aligned_cols=159 Identities=25% Similarity=0.317 Sum_probs=105.0
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc--CCCCCCCCChHHHHHHHHHHHHcC----CCHHHHHHHHHHh
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG--VPYSDPLADGPVIQAAATRSLARG----TNFNAILSMLKEV 134 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG--~PfsDP~aDGp~Iq~a~~~Al~~G----~~~~~~~~~i~~i 134 (311)
.+..++.-|..++| +.+.+.++.+.++|+|.|||. -|.+.-.-| +.| -+.+.+.++++++
T Consensus 53 ~~~p~~~qi~g~~~--~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~------------~~G~~l~~~~~~~~eii~~v 118 (231)
T cd02801 53 EERPLIVQLGGSDP--ETLAEAAKIVEELGADGIDLNMGCPSPKVTKG------------GAGAALLKDPELVAEIVRAV 118 (231)
T ss_pred cCCCEEEEEcCCCH--HHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCC------------CeeehhcCCHHHHHHHHHHH
Confidence 34567777766666 789999999999999999994 332211111 112 2556678899999
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~ 214 (311)
++...+|+.+-.-. |. +.. ++..++.+.+.+.|++.+.+ +..+..+
T Consensus 119 ~~~~~~~v~vk~r~------~~------------------~~~-~~~~~~~~~l~~~Gvd~i~v-~~~~~~~-------- 164 (231)
T cd02801 119 REAVPIPVTVKIRL------GW------------------DDE-EETLELAKALEDAGASALTV-HGRTREQ-------- 164 (231)
T ss_pred HHhcCCCEEEEEee------cc------------------CCc-hHHHHHHHHHHHhCCCEEEE-CCCCHHH--------
Confidence 88777787774211 10 000 34555555566666655543 2222111
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
+..+ +. ..+.++++++.+++||++.+||++++++.++++. |||+|.+|.+++.
T Consensus 165 -----------~~~~-----~~-~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 165 -----------RYSG-----PA-DWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred -----------cCCC-----CC-CHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 0011 11 2367888999899999999999999999999997 8999999999886
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.8e-08 Score=89.85 Aligned_cols=189 Identities=20% Similarity=0.253 Sum_probs=115.8
Q ss_pred cCCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 60 QGKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
.++..+|.=+=--.|.. ....++++.+.++||++|-+- .||-.=| .-++.+..
T Consensus 45 ~~~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVl---Te~~~F~------------------Gs~~dL~~ 103 (254)
T PF00218_consen 45 EGRISVIAEIKRASPSKGDIREDFDPAEIAKAYEEAGAAAISVL---TEPKFFG------------------GSLEDLRA 103 (254)
T ss_dssp TSS-EEEEEE-SEETTTEESBSS-SHHHHHHHHHHTT-SEEEEE-----SCCCH------------------HHHHHHHH
T ss_pred CCCCeEEEEeecCCCCCCccCccCCHHHHHHHHHhcCCCEEEEE---CCCCCCC------------------CCHHHHHH
Confidence 47778888663333432 256899999999999999995 5553222 22567888
Q ss_pred hhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 134 VVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 134 ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
+|+.+++|+.-- ++... +--+..++.+|||+|++. =|+.+...++.+.++..|++.+.=+ ++. +.++..
T Consensus 104 v~~~~~~PvL~K----DFIid--~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEV--h~~-~El~~a 174 (254)
T PF00218_consen 104 VRKAVDLPVLRK----DFIID--PYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEV--HNE-EELERA 174 (254)
T ss_dssp HHHHSSS-EEEE----S---S--HHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEE--SSH-HHHHHH
T ss_pred HHHHhCCCcccc----cCCCC--HHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEE--CCH-HHHHHH
Confidence 888899998773 22211 224567889999997774 3444556899999999999877654 343 444444
Q ss_pred HHhCCceEEEEe-cCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 212 VEASEGFVYLVS-SIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 212 ~~~a~gfiY~vs-~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
...... +.-+- +.=.| +..++ +...++.... +..++...||++++++..+.++|+|||.||++|++.
T Consensus 175 l~~~a~-iiGINnRdL~t-----f~vd~-~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 175 LEAGAD-IIGINNRDLKT-----FEVDL-NRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp HHTT-S-EEEEESBCTTT-----CCBHT-HHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred HHcCCC-EEEEeCccccC-----cccCh-HHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 333222 22232 11111 12221 2333444432 477889999999999999999999999999999984
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.4e-08 Score=96.38 Aligned_cols=184 Identities=17% Similarity=0.111 Sum_probs=117.1
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCC-CCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSD-PLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsD-P~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
..+|+=| .|.++.+.+.+.++.+++.|+|+|||.+-... +...| .- -.-+.+.+.+.++++.+++.+++|
T Consensus 100 ~p~i~si-~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~------~g--~~~~~~~~~~~~i~~~v~~~~~~P 170 (420)
T PRK08318 100 RALIASI-MVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERG------MG--SAVGQVPELVEMYTRWVKRGSRLP 170 (420)
T ss_pred ceEEEEe-ccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccC------Cc--ccccCCHHHHHHHHHHHHhccCCc
Confidence 3344433 47777899999999999999999999754422 11100 00 001245667778999999888999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.|. ..+.++++.+.++|+|||++-+--... .+++ +.+. .....+ ....+
T Consensus 171 v~vKl~p~~---~~~~~~a~~~~~~Gadgi~~~Nt~~~~----------~~id------~~~~-~~~p~~-~~~~~---- 225 (420)
T PRK08318 171 VIVKLTPNI---TDIREPARAAKRGGADAVSLINTINSI----------TGVD------LDRM-IPMPIV-NGKSS---- 225 (420)
T ss_pred EEEEcCCCc---ccHHHHHHHHHHCCCCEEEEecccCcc----------cccc------cccc-CCCcee-cCCCC----
Confidence 998754331 135677888888999998765321100 0111 0000 000000 00000
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+-..++|.++++.+ ++||+.-+||.|.+|+.+.+.+|||+|-|||+++.
T Consensus 226 --~gg~SG~--a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 226 --HGGYCGP--AVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred --cccccch--hhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 1134443 22233457899998876 79999999999999999999999999999999886
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-08 Score=91.83 Aligned_cols=189 Identities=19% Similarity=0.299 Sum_probs=125.6
Q ss_pred cCCccEEEEEeCCCCChh------hHHHHHHHHHHCCCCEEEEcCCCCCC-CCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 60 QGKVALIPYITAGDPDLS------TTAEALKLLDSCGSDIIELGVPYSDP-LADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~------~~~e~~~~L~~~GaD~IElG~PfsDP-~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
.++..+|.=+=---|+.. .-.++++.++++|+++|-+= +|| +-+| + ++.++
T Consensus 43 ~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVL---Td~~~F~G---------------s----~e~L~ 100 (254)
T COG0134 43 SGKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVL---TDPKYFQG---------------S----FEDLR 100 (254)
T ss_pred CCCceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEe---cCccccCC---------------C----HHHHH
Confidence 478899987733344332 34679999999999999993 333 2233 1 46888
Q ss_pred HhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHH
Q 021527 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~ 210 (311)
.+|+.+.+||..-=+ ..- .-.+..+...|+|.|++. =|..++..++...++..|++.+.=+. + .+.++.
T Consensus 101 ~v~~~v~~PvL~KDF----iiD--~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh--~-~eEl~r 171 (254)
T COG0134 101 AVRAAVDLPVLRKDF----IID--PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVH--N-EEELER 171 (254)
T ss_pred HHHHhcCCCeeeccC----CCC--HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEEC--C-HHHHHH
Confidence 999999999877422 111 235778889999998775 35556689999999999999765443 2 344444
Q ss_pred HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 211 i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..+.....|= +-....+ .+..++ +...++.... +.-++...||++++++.++.++||||+.|||++++.
T Consensus 172 Al~~ga~iIG-INnRdL~----tf~vdl-~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 172 ALKLGAKIIG-INNRDLT----TLEVDL-ETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHhCCCCEEE-EeCCCcc----hheecH-HHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 4443333321 1111111 112222 2233343332 467889999999999999999999999999999994
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=5e-08 Score=92.37 Aligned_cols=176 Identities=20% Similarity=0.221 Sum_probs=112.6
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
..+|+=|..- +.+.+.+.++.++++| +|+|||.+ +-|...+- ....+.+.+.+.++++.+|+.+++|
T Consensus 92 ~p~i~si~g~--~~~~~~~~a~~~~~aG~~D~iElN~--~cP~~~~g--------g~~~~~~~~~~~eiv~~vr~~~~~p 159 (301)
T PRK07259 92 TPIIANVAGS--TEEEYAEVAEKLSKAPNVDAIELNI--SCPNVKHG--------GMAFGTDPELAYEVVKAVKEVVKVP 159 (301)
T ss_pred CcEEEEeccC--CHHHHHHHHHHHhccCCcCEEEEEC--CCCCCCCC--------ccccccCHHHHHHHHHHHHHhcCCC
Confidence 4455555332 4589999999999999 99999954 22322210 0112345667788999999888999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.+. ....++++.+.++|+|++.+.+-.. |.. +...+....+ ...
T Consensus 160 v~vKl~~~~---~~~~~~a~~l~~~G~d~i~~~nt~~-------------g~~----~~~~~~~~~~----~~~------ 209 (301)
T PRK07259 160 VIVKLTPNV---TDIVEIAKAAEEAGADGLSLINTLK-------------GMA----IDIKTRKPIL----ANV------ 209 (301)
T ss_pred EEEEcCCCc---hhHHHHHHHHHHcCCCEEEEEcccc-------------ccc----cccccCceee----cCC------
Confidence 988532211 1234567777788888876643210 110 0001000000 000
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+-..++++++++.+++||+..+||++++++.+++..|||+|-||++++.
T Consensus 210 --~gg~sg~--~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~ 268 (301)
T PRK07259 210 --TGGLSGP--AIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY 268 (301)
T ss_pred --cCccCCc--CcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc
Confidence 0112222 1222345789999998899999999999999999999999999999999987
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=85.69 Aligned_cols=191 Identities=19% Similarity=0.208 Sum_probs=129.3
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIA 143 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPii 143 (311)
+++-+-. .+.++..+.+++|.++|++.+|+- ++.| +.++.+++++++. ++.|+
T Consensus 10 liaVlr~--~~~e~a~~~~~al~~~Gi~~iEit--~~t~----------------------~a~~~i~~l~~~~~~~~vG 63 (204)
T TIGR01182 10 IVPVIRI--DDVDDALPLAKALIEGGLRVLEVT--LRTP----------------------VALDAIRLLRKEVPDALIG 63 (204)
T ss_pred EEEEEec--CCHHHHHHHHHHHHHcCCCEEEEe--CCCc----------------------cHHHHHHHHHHHCCCCEEE
Confidence 5555542 356899999999999999999995 3333 3356777777653 45566
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
.-+-.+ .+-++.+.++|++-++-|.+.. ++.+.|+++|+..++-+ .|+.|-...+ +..-.++=+-.
T Consensus 64 AGTVl~-------~~~a~~a~~aGA~FivsP~~~~----~v~~~~~~~~i~~iPG~--~TptEi~~A~-~~Ga~~vKlFP 129 (204)
T TIGR01182 64 AGTVLN-------PEQLRQAVDAGAQFIVSPGLTP----ELAKHAQDHGIPIIPGV--ATPSEIMLAL-ELGITALKLFP 129 (204)
T ss_pred EEeCCC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHcCCcEECCC--CCHHHHHHHH-HCCCCEEEECC
Confidence 554433 3568889999999998887742 47778999999888754 4555654433 32223332211
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHH
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKF 302 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~ 302 (311)
. +..|. ..+++.+|.-. ++|++.-+||+ ++|+.+.+++|+.++.+||.+++.-.- .+...+++++.
T Consensus 130 A-~~~GG--------~~yikal~~plp~i~~~ptGGV~-~~N~~~~l~aGa~~vg~Gs~L~~~~~~---~~~~~~~i~~~ 196 (204)
T TIGR01182 130 A-EVSGG--------VKMLKALAGPFPQVRFCPTGGIN-LANVRDYLAAPNVACGGGSWLVPKDLI---AAGDWDEITRL 196 (204)
T ss_pred c-hhcCC--------HHHHHHHhccCCCCcEEecCCCC-HHHHHHHHhCCCEEEEEChhhcCchhh---ccccHHHHHHH
Confidence 0 11110 26899998865 79999999997 799999999999999999999862210 12234566666
Q ss_pred HHHHHh
Q 021527 303 AKSLKS 308 (311)
Q Consensus 303 ~~~l~~ 308 (311)
++++..
T Consensus 197 a~~~~~ 202 (204)
T TIGR01182 197 AREALE 202 (204)
T ss_pred HHHHHh
Confidence 666543
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-08 Score=96.77 Aligned_cols=213 Identities=17% Similarity=0.195 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHc-CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 49 GLAETFTRLKKQ-GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 49 ~i~~~f~~~~~~-~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
++++ +.+++++ ....+|.=|. |--+.+.+.+.++.+++.|+|+|||.+ |...+..++ ....|.+.+
T Consensus 100 ~l~~-i~~~k~~~~~~pvIaSi~-~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~---------g~~~gq~~e 168 (385)
T PLN02495 100 MLAE-FKQLKEEYPDRILIASIM-EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKM---------GAAVGQDCD 168 (385)
T ss_pred HHHH-HHHHHhhCCCCcEEEEcc-CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCcc---------chhhccCHH
Confidence 3444 3444433 2234554443 434669999999999999999999975 333322221 111234555
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
-+-++++.+++.+++|+++----| . ..+..+++.+.+.|+|||+.-+--.. ..+++ +.+..
T Consensus 169 ~~~~i~~~Vk~~~~iPv~vKLsPn--~-t~i~~ia~aa~~~Gadgi~liNT~~~----------~~~ID------~~t~~ 229 (385)
T PLN02495 169 LLEEVCGWINAKATVPVWAKMTPN--I-TDITQPARVALKSGCEGVAAINTIMS----------VMGIN------LDTLR 229 (385)
T ss_pred HHHHHHHHHHHhhcCceEEEeCCC--h-hhHHHHHHHHHHhCCCEEEEecccCc----------ccccc------cccCc
Confidence 555666777877889999875433 1 13567888899999999987642110 01111 11100
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC------CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS------TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~------~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
... .+ .+. ...-|.+|. .+.+-....+.++++.+ ++||+.-+||.+.+|+.+.+.+|||.|-|+
T Consensus 230 p~~-~~----~~~---~~~GGlSG~--alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~ 299 (385)
T PLN02495 230 PEP-CV----EGY---STPGGYSSK--AVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVC 299 (385)
T ss_pred ccc-cc----CCC---CCCCCccch--hhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEe
Confidence 000 00 000 001123332 23333334455555543 489999999999999999999999999999
Q ss_pred hHhhchhhhcCC-chhHHHHHHHHHH
Q 021527 280 SAMVKLLGEAQS-PEEGLKELEKFAK 304 (311)
Q Consensus 280 Saiv~~~~~~~~-~~~~~~~~~~~~~ 304 (311)
|+++.. +.. .++..+++.+|++
T Consensus 300 Ta~~~~---Gp~vi~~i~~~L~~~m~ 322 (385)
T PLN02495 300 TGVMMH---GYPLVKNLCAELQDFMK 322 (385)
T ss_pred eeeeec---CcHHHHHHHHHHHHHHH
Confidence 999873 111 2344555666554
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-07 Score=93.42 Aligned_cols=173 Identities=14% Similarity=0.068 Sum_probs=111.7
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL 144 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil 144 (311)
+-.|.+..+ .++++.+.++|++.|++ +++-.+.....+. ...+.++.++.++++++
T Consensus 211 l~LY~Vtd~------~~~ve~aL~aGv~~VQL----ReK~ls~~el~~l--------------a~~l~~l~~~~gv~LiI 266 (437)
T PRK12290 211 LGLYPVVDD------VEWIERLLPLGINTVQL----RIKDPQQADLEQQ--------------IIRAIALGREYNAQVFI 266 (437)
T ss_pred ceEEEEeCC------HHHHHHHHhCCCCEEEE----eCCCCCHHHHHHH--------------HHHHHHHHHHhCCEEEE
Confidence 335765543 25688999999999999 4554454332221 12333444567899998
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE-
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL- 221 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~- 221 (311)
. ++.+.+.+.|+|||+++ |++..+...+ .|-..++-+|..+.+|. .+... .|..|+
T Consensus 267 N------------D~~dlAl~~gAdGVHLGQeDL~~~~aR~i------lg~~~iIGvStHs~eEl-~~A~~--~gaDYI~ 325 (437)
T PRK12290 267 N------------DYWQLAIKHQAYGVHLGQEDLEEANLAQL------TDAGIRLGLSTHGYYEL-LRIVQ--IQPSYIA 325 (437)
T ss_pred E------------CHHHHHHHcCCCEEEcChHHcchhhhhhh------cCCCCEEEEecCCHHHH-HHHhh--cCCCEEE
Confidence 3 45777888999999997 6765443322 23345666776665553 33323 455565
Q ss_pred -EecCCccCCCC-CCCchHHHHHHHHhhcC---------CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 -VSSIGVTGARA-SISGHVQTLLREIKESS---------TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 -vs~~G~TG~~~-~~~~~~~~~l~~vk~~~---------~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
...+ .|.++. ..++--.+.++++++.. ++|+++=+||+ ++++.++.+.|||||.|=|+|.+
T Consensus 326 lGPIF-pT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~-~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 326 LGHIF-PTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGID-QSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred ECCcc-CCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcC-HHHHHHHHHcCCCEEEEehHhhc
Confidence 3444 344443 23333345566555543 69998888895 89999999999999999999996
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.4e-08 Score=90.76 Aligned_cols=175 Identities=19% Similarity=0.240 Sum_probs=111.6
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCC--CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCG--SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~G--aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
.++.=|... +.+.+.+.++.+.++| +|.|||. ++-|...| +-...+.+.+.+.++++++|+.+++|
T Consensus 92 pl~~qi~g~--~~~~~~~~a~~~~~~~~~~d~ielN--~~cP~~~~--------~g~~l~~~~~~~~eiv~~vr~~~~~p 159 (300)
T TIGR01037 92 PLIASVYGS--SVEEFAEVAEKLEKAPPYVDAYELN--LSCPHVKG--------GGIAIGQDPELSADVVKAVKDKTDVP 159 (300)
T ss_pred cEEEEeecC--CHHHHHHHHHHHHhccCccCEEEEE--CCCCCCCC--------CccccccCHHHHHHHHHHHHHhcCCC
Confidence 355555433 4588999999998864 9999997 45555443 11123456677788999999888899
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.+. ....++++.+.++|+|++.+..--. +.. +- .....+ . . ...
T Consensus 160 v~vKi~~~~---~~~~~~a~~l~~~G~d~i~v~nt~~-------------~~~-~~-~~~~~~--~---~-~~~------ 209 (300)
T TIGR01037 160 VFAKLSPNV---TDITEIAKAAEEAGADGLTLINTLR-------------GMK-ID-IKTGKP--I---L-ANK------ 209 (300)
T ss_pred EEEECCCCh---hhHHHHHHHHHHcCCCEEEEEccCC-------------ccc-cc-cccCce--e---e-CCC------
Confidence 888642110 1234566667778888876642110 000 00 000000 0 0 000
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. ...+-..+.+.++++.+++||+..+||.+++++.+++..|||+|.||++++.
T Consensus 210 --~gg~sg~--~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~ 268 (300)
T TIGR01037 210 --TGGLSGP--AIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY 268 (300)
T ss_pred --Cccccch--hhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc
Confidence 0122332 1222235788999998899999999999999999999999999999999986
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-08 Score=93.21 Aligned_cols=178 Identities=18% Similarity=0.186 Sum_probs=111.7
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHC---CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSC---GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~---GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
.++.=| .|. .+++.+.++.+++. |+|+|||.+-. |...|- + ..+.+.+.+.++++.+++.+++
T Consensus 93 pvivsi-~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sC--Pn~~~~-------~--~~~~~~~~~~~i~~~v~~~~~i 158 (294)
T cd04741 93 PFFISV-TGS--AEDIAAMYKKIAAHQKQFPLAMELNLSC--PNVPGK-------P--PPAYDFDATLEYLTAVKAAYSI 158 (294)
T ss_pred eEEEEC-CCC--HHHHHHHHHHHHhhccccccEEEEECCC--CCCCCc-------c--cccCCHHHHHHHHHHHHHhcCC
Confidence 344443 355 68999999999885 79999997433 433221 0 1234677888899999999999
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHc--CCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDI--GIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~a--GadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
||.+-.-.+. ....+.++++.+.+. |+|||++.+--.. ++ .+.+. |.+.......+
T Consensus 159 Pv~vKl~p~~-~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~------------~~----~id~~----~~~~~~~~~~~- 216 (294)
T cd04741 159 PVGVKTPPYT-DPAQFDTLAEALNAFACPISFITATNTLGN------------GL----VLDPE----RETVVLKPKTG- 216 (294)
T ss_pred CEEEEeCCCC-CHHHHHHHHHHHhccccCCcEEEEEccCCc------------cc----cccCC----CCCcccCCCCC-
Confidence 9998753221 111234555556566 7888776421100 00 01110 00000000111
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+...+.++++++.+ ++||+.-+||.|.+|+.+.+.+|||+|-|||+++.
T Consensus 217 -----~gG~SG~--~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 217 -----FGGLAGA--YLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred -----CCCcCch--hhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 1134442 23444567789998887 49999999999999999999999999999999986
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-08 Score=89.41 Aligned_cols=182 Identities=20% Similarity=0.245 Sum_probs=124.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~ 153 (311)
+.++..++++.|.+.|+|.||+|.|.+.+.. |.+ ++.++.++++++.. ++++..|+-.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~--p~~--------------~~~~~~i~~l~~~~~~~~~~~l~~~----- 75 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAV--PQM--------------EDDWEVLRAIRKLVPNVKLQALVRN----- 75 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcccc--ccC--------------CCHHHHHHHHHhccCCcEEEEEccC-----
Confidence 5688999999999999999999999987654 332 23356777887764 6777676531
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCCh----------------hhHHHHHHHHHHcCCCeEEEeCCCC----hH----HHHH
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPL----------------EETESLQKEAMKNKIELVLFTTPTT----PT----DRMK 209 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~----------------ee~~~~~~~~~~~gi~~I~lisp~t----~~----eri~ 209 (311)
+ .++++.++++|++.+.+.+-.. ++..+..+.++++|++..+.+...+ +. +.++
T Consensus 76 -~-~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~ 153 (265)
T cd03174 76 -R-EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAK 153 (265)
T ss_pred -c-hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHH
Confidence 2 7789999999999999875432 4466778889999998776653222 22 3344
Q ss_pred HHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEee----CCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 210 AIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGF----GISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 210 ~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGf----GIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+.....+|+... +|. ..|.++.++++.+++..+ +|+-+=+ |... .+.....++|||.| .+-+.
T Consensus 154 ~~~~~g~~~i~l~Dt---~G~--~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~-an~laA~~aG~~~i---d~s~~ 224 (265)
T cd03174 154 ALEEAGADEISLKDT---VGL--ATPEEVAELVKALREALPDVPLGLHTHNTLGLAV-ANSLAALEAGADRV---DGSVN 224 (265)
T ss_pred HHHHcCCCEEEechh---cCC--cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHH-HHHHHHHHcCCCEE---Eeccc
Confidence 444444556777654 443 456778999999999765 6665522 4442 45566678999876 44444
Q ss_pred hhhh
Q 021527 285 LLGE 288 (311)
Q Consensus 285 ~~~~ 288 (311)
.+++
T Consensus 225 G~G~ 228 (265)
T cd03174 225 GLGE 228 (265)
T ss_pred cccc
Confidence 4443
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.4e-08 Score=89.80 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=121.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+++||+- | . |+ . | ++.++++.+.+++|+.+-+=.+ . +-
T Consensus 41 ~~~A~~~~~~Ga~~lHvV----D--L-g~------------~-n----~~~i~~i~~~~~~~v~vGGGIr------~-e~ 89 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVI----M--L-GP------------N-N----DDAAKEALHAYPGGLQVGGGIN------D-TN 89 (253)
T ss_pred HHHHHHHHHcCCCEEEEE----E--C-CC------------C-c----HHHHHHHHHhCCCCEEEeCCcC------H-HH
Confidence 689999999999999994 1 1 21 1 2 2578888888889998865322 1 45
Q ss_pred HHHHHHcCCcEEEecCCChhh----HHHHHHHHHHcCCCeEEE---------------e------CCCChH-HHHHHHHH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEE----TESLQKEAMKNKIELVLF---------------T------TPTTPT-DRMKAIVE 213 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee----~~~~~~~~~~~gi~~I~l---------------i------sp~t~~-eri~~i~~ 213 (311)
++.+.++|++.+++....+++ ...+.+.++++|-+.|.+ + +..++. +.++++.+
T Consensus 90 v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~ 169 (253)
T TIGR02129 90 AQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSK 169 (253)
T ss_pred HHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHh
Confidence 677888999999998755544 456677778876332221 1 122233 55666655
Q ss_pred hCCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc--CCcEEEEhhHhhchhh
Q 021527 214 ASEGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW--GADGVIVGSAMVKLLG 287 (311)
Q Consensus 214 ~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~--GADGvIVGSaiv~~~~ 287 (311)
....++|. ++.-|+ .++.+ .++++++++.+++||++.+|+++.+|+.++.+. |..++|+|.++.....
T Consensus 170 ~~~~il~TdI~rDGt---l~G~d---lel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f~~ 240 (253)
T TIGR02129 170 YCDEFLIHAADVEGL---CKGID---EELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIFGG 240 (253)
T ss_pred hCCEEEEeeecccCc---cccCC---HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHhCC
Confidence 55566766 666653 22333 367888888899999999999999999999665 6788999999998765
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.8e-07 Score=82.76 Aligned_cols=188 Identities=14% Similarity=0.194 Sum_probs=121.9
Q ss_pred CCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 61 GKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
++..+|.=+=.-.|+. -...++++.++++||+.|-+- .||-.-| -+ ++.++++
T Consensus 39 ~~~~vIaEiKr~SPs~G~i~~~~d~~~~A~~y~~~GA~aISVl---Te~~~F~--------------Gs----~~~l~~v 97 (247)
T PRK13957 39 RSFSIIAECKRKSPSAGELRADYHPVQIAKTYETLGASAISVL---TDQSYFG--------------GS----LEDLKSV 97 (247)
T ss_pred CCCeEEEEEecCCCCCCCcCCCCCHHHHHHHHHHCCCcEEEEE---cCCCcCC--------------CC----HHHHHHH
Confidence 3456676553333442 246789999999999999885 4443322 23 3578888
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
|+.+++||+.-.+.= -+.-+..+..+|||+|++. -++.++..++.+.+...|++.+.=+ ++. +.++...
T Consensus 98 ~~~v~~PvL~KDFIi------d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEV--h~~-~El~~a~ 168 (247)
T PRK13957 98 SSELKIPVLRKDFIL------DEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEV--HTE-DEAKLAL 168 (247)
T ss_pred HHhcCCCEEeccccC------CHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEE--CCH-HHHHHHH
Confidence 888899988754221 1234556777999998874 5666778999999999999977654 333 3343333
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.....+ .-+-..... .+..++ +...++.... +..++...||+|++|+..+.+. +|||.||+++++.
T Consensus 169 ~~ga~i-iGINnRdL~----t~~vd~-~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 169 DCGAEI-IGINTRDLD----TFQIHQ-NLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred hCCCCE-EEEeCCCCc----cceECH-HHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 322233 223211110 111111 2334444443 4667789999999999999987 9999999999994
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-07 Score=88.24 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEe-cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCC
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFT-YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTP 201 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~-Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp 201 (311)
+.+++-+.++++|+.++.|+.+.. +..|. .++.++.+.+.|++.|.+.--.+ .++.+.++++|+.++..+
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~----~~~~~~~~~~~~v~~v~~~~g~p---~~~i~~lk~~g~~v~~~v-- 116 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLSPF----VDELVDLVIEEKVPVVTTGAGNP---GKYIPRLKENGVKVIPVV-- 116 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCCCC----HHHHHHHHHhCCCCEEEEcCCCc---HHHHHHHHHcCCEEEEEc--
Confidence 445666788888887888987753 22222 35677888999999987742222 246777888898766544
Q ss_pred CChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 202 TTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 202 ~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+. +..++..+..-+.+.+... -.|...+ .....+++.++++.+++||++.+||.+++++.+++..|||||.+||.
T Consensus 117 ~s~-~~a~~a~~~GaD~Ivv~g~--eagGh~g-~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 117 ASV-ALAKRMEKAGADAVIAEGM--ESGGHIG-ELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred CCH-HHHHHHHHcCCCEEEEECc--ccCCCCC-CCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecchH
Confidence 233 3333333433333333221 1222211 12246789999998899999999999999999999999999999999
Q ss_pred hhchhhh
Q 021527 282 MVKLLGE 288 (311)
Q Consensus 282 iv~~~~~ 288 (311)
|.-..+.
T Consensus 193 f~~t~Es 199 (307)
T TIGR03151 193 FLCAKEC 199 (307)
T ss_pred Hhccccc
Confidence 9987754
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-07 Score=87.96 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=127.5
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCC--hHHHHHHH--------HHHH--HcC---CCHHHHHHHHH
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLAD--GPVIQAAA--------TRSL--ARG---TNFNAILSMLK 132 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aD--Gp~Iq~a~--------~~Al--~~G---~~~~~~~~~i~ 132 (311)
++.+--|+ ....+.++.+.++|+..++++-=+.+|..- .|-+-... ..++ ..| ...+.+++.++
T Consensus 12 v~~aag~~-~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~ 90 (289)
T cd02810 12 FGVAAGPL-LKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIA 90 (289)
T ss_pred CEeCCCCC-CCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHHH
Confidence 33443343 345688888999999999997666554421 11111000 0001 122 24566666666
Q ss_pred Hhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe----cCCC--------hhhHHHHHHHHHHc-CCCeEEE
Q 021527 133 EVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV----PDVP--------LEETESLQKEAMKN-KIELVLF 198 (311)
Q Consensus 133 ~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii----pDlp--------~ee~~~~~~~~~~~-gi~~I~l 198 (311)
+.++. .+.|+++-...+... ...+.++.+.+.|+|++-+ |... ++...++.+.+++. ++.+..=
T Consensus 91 ~~~~~~~~~pvi~si~g~~~~--~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vK 168 (289)
T cd02810 91 KAKKEFPGQPLIASVGGSSKE--DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVK 168 (289)
T ss_pred HHHhccCCCeEEEEeccCCHH--HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEE
Confidence 66655 578987743322111 1234566777889999876 2211 13355566666654 5555555
Q ss_pred eCCCChHHHHHHHHHh--CCceEEEEecCCccCC--------------CCC-----CCchHHHHHHHHhhcC--CCcEEE
Q 021527 199 TTPTTPTDRMKAIVEA--SEGFVYLVSSIGVTGA--------------RAS-----ISGHVQTLLREIKESS--TKPVAV 255 (311)
Q Consensus 199 isp~t~~eri~~i~~~--a~gfiY~vs~~G~TG~--------------~~~-----~~~~~~~~l~~vk~~~--~~Pv~v 255 (311)
+++..+.+.+.++++. ..|..+++...+..+. ... ..+...++++++|+.+ ++||+.
T Consensus 169 l~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia 248 (289)
T cd02810 169 LSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIG 248 (289)
T ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 6666654444444442 2355555432211110 001 1112357799999988 899999
Q ss_pred eeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 256 GFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 256 GfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+||++++++.+++..|||+|-|||+++.
T Consensus 249 ~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 249 VGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred ECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 99999999999999999999999999987
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=92.10 Aligned_cols=162 Identities=16% Similarity=0.207 Sum_probs=102.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-----CcEEEEecCc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-----CPIALFTYYN 149 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-----iPiilm~Y~n 149 (311)
..+++.+.++.+.+ ++|+||+.+ |-|..+|- + .+.+.+.+.++++++|+.++ +||.+-.-.|
T Consensus 155 ~~~d~~~~~~~~~~-~ad~lelN~--scP~~~g~-------~---~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~ 221 (344)
T PRK05286 155 AVDDYLICLEKLYP-YADYFTVNI--SSPNTPGL-------R---DLQYGEALDELLAALKEAQAELHGYVPLLVKIAPD 221 (344)
T ss_pred CHHHHHHHHHHHHh-hCCEEEEEc--cCCCCCCc-------c---cccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC
Confidence 34677777777655 699999984 55655431 1 13445566678888887765 9998865333
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG 229 (311)
. ....+.++++.+.++|+||+++..-..+ ..++. .+. . ..+ .-|.+|
T Consensus 222 ~-~~~~~~~ia~~l~~~Gadgi~~~nt~~~----------~~~~~-----~~~-----~------~~~------~gg~SG 268 (344)
T PRK05286 222 L-SDEELDDIADLALEHGIDGVIATNTTLS----------RDGLK-----GLP-----N------ADE------AGGLSG 268 (344)
T ss_pred C-CHHHHHHHHHHHHHhCCcEEEEeCCccc----------ccccc-----ccc-----c------CCC------CCCccc
Confidence 1 0012345667777778888777532110 00000 000 0 000 012233
Q ss_pred CCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 230 ARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. .+-+-..++++++++.+ ++||+.-+||.+++++.+++..|||+|-|||+++.
T Consensus 269 ~--~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~ 323 (344)
T PRK05286 269 R--PLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY 323 (344)
T ss_pred H--HHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 11222456899999887 79999999999999999999999999999999975
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-07 Score=88.31 Aligned_cols=208 Identities=18% Similarity=0.232 Sum_probs=120.1
Q ss_pred HHHHHHHHHHcC-CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC--CCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 50 LAETFTRLKKQG-KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY--SDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 50 i~~~f~~~~~~~-~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf--sDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
+.+.|...++.. ...+++=|-+..+......+..++++..++|.+|++++. ......| ..+.+.
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g-------------~~~f~~ 173 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEG-------------DRDFRG 173 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCC-------------cccHHH
Confidence 667777777654 455655443322211112334444555689999998644 1101111 134567
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
+++.++++++.+++||++-.--+. . ..+.++.+.++|+|++.+.... |-..+ ..+
T Consensus 174 ~le~i~~i~~~~~vPVivK~~g~g---~-s~~~a~~l~~~Gvd~I~Vsg~G--------------Gt~~~-------~ie 228 (352)
T PRK05437 174 WLDNIAEIVSALPVPVIVKEVGFG---I-SKETAKRLADAGVKAIDVAGAG--------------GTSWA-------AIE 228 (352)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCC---C-cHHHHHHHHHcCCCEEEECCCC--------------CCCcc-------chh
Confidence 789999999999999998632111 1 1467788888999998775321 10000 001
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..+.. . ...+.|.. ..| .+ ..+.+.++++. .++||++.+||+++.++.+++..|||+|-+|+++.+.
T Consensus 229 ~~R~~-~-~~~~~~~~-~~g-------~p--t~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 229 NYRAR-D-DRLASYFA-DWG-------IP--TAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred hhhhh-c-cccccccc-ccc-------CC--HHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 00000 0 00011110 011 12 23456667776 5899999999999999999999999999999999987
Q ss_pred hhhcCCchhHHHHHHHHHHHHHh
Q 021527 286 LGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+.+.+ +..-.+.++.+.++|+.
T Consensus 297 ~~~~g-~~~v~~~i~~~~~eL~~ 318 (352)
T PRK05437 297 ALEGG-EEAVIELIEQWIEELKI 318 (352)
T ss_pred HHhcc-HHHHHHHHHHHHHHHHH
Confidence 64321 22223345555555554
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.2e-07 Score=95.71 Aligned_cols=188 Identities=19% Similarity=0.178 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+.+.+.++.+.++|+++|.+ +++-.|....... ..-+.++.++.++++++.
T Consensus 19 ~~~~~~l~~~l~~g~~~iql----R~K~~~~~~~~~~--------------a~~l~~l~~~~~~~liin----------- 69 (755)
T PRK09517 19 EKVAGIVDSAISGGVSVVQL----RDKNAGVEDVRAA--------------AKELKELCDARGVALVVN----------- 69 (755)
T ss_pred ccHHHHHHHHHhcCCCEEEE----eCCCCCHHHHHHH--------------HHHHHHHHHHhCCeEEEe-----------
Confidence 45778888999999999999 5665555333221 223344445567899883
Q ss_pred HHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH-hCC---ceEEEE-ecCCccC
Q 021527 157 DNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE-ASE---GFVYLV-SSIGVTG 229 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~-~a~---gfiY~v-s~~G~TG 229 (311)
++.+.+.+.|+| |+++ |+|.++..+. .+-+.++-++..+.++..+..+. ... |..|+. +-.-.|.
T Consensus 70 -d~~~la~~~~~d-VHlg~~dl~~~~~r~~------~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~ 141 (755)
T PRK09517 70 -DRLDVAVELGLH-VHIGQGDTPYTQARRL------LPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTA 141 (755)
T ss_pred -ChHHHHHHcCCC-eecCCCcCCHHHHHHh------cCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccC
Confidence 457788899999 9887 6776554432 24455666777766553221111 121 367773 3223466
Q ss_pred CCCCCCc-hHHHHHHHHhhcCC---CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHH
Q 021527 230 ARASISG-HVQTLLREIKESST---KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 230 ~~~~~~~-~~~~~l~~vk~~~~---~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
++.+..+ --.+.++++++.++ +||++=+||+ ++++.++.+.|||||.|.|++.+. .++...++++.+-++.
T Consensus 142 tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~-~~~~~~~~~~Ga~giAvisai~~a----~d~~~a~~~l~~~~~~ 216 (755)
T PRK09517 142 TKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGVG-LRNAAELAATGIDGLCVVSAIMAA----ANPAAAARELRTAFQP 216 (755)
T ss_pred CCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCCC-HHHHHHHHHcCCCEEEEehHhhCC----CCHHHHHHHHHHHHHH
Confidence 6544432 23466787777776 9999999995 899999999999999999999862 2344444444444443
Q ss_pred H
Q 021527 306 L 306 (311)
Q Consensus 306 l 306 (311)
+
T Consensus 217 ~ 217 (755)
T PRK09517 217 T 217 (755)
T ss_pred h
Confidence 3
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-07 Score=95.10 Aligned_cols=197 Identities=14% Similarity=0.131 Sum_probs=128.6
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHHHHHHhhccCCCcEEEEecCcchh-----c
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT-NFNAILSMLKEVVPQMSCPIALFTYYNPIL-----K 153 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~-~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~-----~ 153 (311)
++.++.+.+.|||.|++= ..||- ..|. .-+..+++++++.+++.+|+-+-|=.+.+. .
T Consensus 270 ve~a~~y~~~Gadel~~~------Di~~~----------~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~ 333 (538)
T PLN02617 270 VELAGQYYKDGADEVAFL------NITGF----------RDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRY 333 (538)
T ss_pred HHHHHHHHHcCCCEEEEE------ECCCC----------cCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccc
Confidence 899999999999999983 11210 0000 001236799999999999999976332220 0
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhH------------HHHHHHHHHcCCC-eEEEeCCC------------------
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEET------------ESLQKEAMKNKIE-LVLFTTPT------------------ 202 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~------------~~~~~~~~~~gi~-~I~lisp~------------------ 202 (311)
+..-+-++.+.++|||-|++.-..++.. ..+.+.++++|=. .+.-+.+.
T Consensus 334 ~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~ 413 (538)
T PLN02617 334 YSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVT 413 (538)
T ss_pred cchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccc
Confidence 0111347888999999999986555432 4466777888865 33333321
Q ss_pred -------------------------ChHHHHHHHHHhCCceEEE--EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE
Q 021527 203 -------------------------TPTDRMKAIVEASEGFVYL--VSSIGVTGARASISGHVQTLLREIKESSTKPVAV 255 (311)
Q Consensus 203 -------------------------t~~eri~~i~~~a~gfiY~--vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v 255 (311)
...+.+++..+..-|-+.+ ++.- |+..+.+ .++++++++.+++||++
T Consensus 414 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~D---Gt~~G~d---~~l~~~v~~~~~ipvia 487 (538)
T PLN02617 414 NPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCD---GQGKGFD---IELVKLVSDAVTIPVIA 487 (538)
T ss_pred ccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccc---ccccCcC---HHHHHHHHhhCCCCEEE
Confidence 1224556665654454443 3433 3344444 36788888889999999
Q ss_pred eeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHH
Q 021527 256 GFGISKPEHVQQVAG-WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 256 GfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
.+|+.+++|+.++++ .|||++..+|-|...- ..+.++++++++
T Consensus 488 sGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~-------~~~~~~k~~l~~ 531 (538)
T PLN02617 488 SSGAGTPEHFSDVFSKTNASAALAAGIFHRKE-------VPISSVKEHLLE 531 (538)
T ss_pred ECCCCCHHHHHHHHhcCCccEEEEEeeeccCC-------CCHHHHHHHHHH
Confidence 999999999999997 5689999999887742 235566666653
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-07 Score=89.21 Aligned_cols=159 Identities=22% Similarity=0.353 Sum_probs=104.0
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC----CCHHHHHHHHHHhhcc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG----TNFNAILSMLKEVVPQ 137 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G----~~~~~~~~~i~~ir~~ 137 (311)
...+++=+...+| +.+.+.++.++++|+|+|||.. ..|. . .+. . -..| .+.+-+.++++.+|+.
T Consensus 62 ~~p~i~ql~g~~~--~~~~~aa~~~~~~G~d~IelN~--gcP~--~-~~~---~--~~~Gs~l~~~~~~~~ei~~~vr~~ 129 (319)
T TIGR00737 62 ETPISVQLFGSDP--DTMAEAAKINEELGADIIDINM--GCPV--P-KIT---K--KGAGSALLRDPDLIGKIVKAVVDA 129 (319)
T ss_pred cceEEEEEeCCCH--HHHHHHHHHHHhCCCCEEEEEC--CCCH--H-Hhc---C--CCccchHhCCHHHHHHHHHHHHhh
Confidence 3456666665666 8889999999999999999942 2231 0 000 0 0012 2456778899999988
Q ss_pred CCCcEEEEec--CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhC
Q 021527 138 MSCPIALFTY--YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEAS 215 (311)
Q Consensus 138 ~~iPiilm~Y--~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a 215 (311)
+++||.+-.- |.. ......+|++.+.++|+|.+.+. ..+. .
T Consensus 130 ~~~pv~vKir~g~~~-~~~~~~~~a~~l~~~G~d~i~vh--------------------------~r~~----------~ 172 (319)
T TIGR00737 130 VDIPVTVKIRIGWDD-AHINAVEAARIAEDAGAQAVTLH--------------------------GRTR----------A 172 (319)
T ss_pred cCCCEEEEEEcccCC-CcchHHHHHHHHHHhCCCEEEEE--------------------------cccc----------c
Confidence 8999877531 110 00113456666666666666542 1110 0
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhHhhc
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA-GWGADGVIVGSAMVK 284 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSaiv~ 284 (311)
. +..| + ...+.++++|+.+++||++.+||++++++.+++ ..|||+|.+|.+++.
T Consensus 173 ~---------~~~~-----~-~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 173 Q---------GYSG-----E-ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred c---------cCCC-----c-hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 0 1111 1 124789999999999999999999999999999 578999999998774
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-06 Score=80.32 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=117.0
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh----cc-C
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV----PQ-M 138 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir----~~-~ 138 (311)
.+++-+..- +.++..+.+++|.++|+..+|+- |+.| +.++.+++++ ++ .
T Consensus 16 ~vi~Vvr~~--~~~~a~~~~~al~~gGi~~iEiT--~~tp----------------------~a~~~i~~l~~~~~~~~p 69 (222)
T PRK07114 16 GMVPVFYHA--DVEVAKKVIKACYDGGARVFEFT--NRGD----------------------FAHEVFAELVKYAAKELP 69 (222)
T ss_pred CEEEEEEcC--CHHHHHHHHHHHHHCCCCEEEEe--CCCC----------------------cHHHHHHHHHHHHHhhCC
Confidence 466666533 55899999999999999999994 4444 1234555554 22 2
Q ss_pred CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 139 SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
++-|..-+-.| .+-++.+.++|++=++-|.+.. ++.+.|+++|+..++.+ .|+.|-+..+ +..-.+
T Consensus 70 ~~~vGaGTVl~-------~e~a~~a~~aGA~FiVsP~~~~----~v~~~~~~~~i~~iPG~--~TpsEi~~A~-~~Ga~~ 135 (222)
T PRK07114 70 GMILGVGSIVD-------AATAALYIQLGANFIVTPLFNP----DIAKVCNRRKVPYSPGC--GSLSEIGYAE-ELGCEI 135 (222)
T ss_pred CeEEeeEeCcC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHcCCCEeCCC--CCHHHHHHHH-HCCCCE
Confidence 34455544333 4567889999999998897753 36778899999888765 3555554333 322223
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCC-HHHHHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISK-PEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst-~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+=+-.. +.-| ..+++.++.-. ++|++.-+||+- .+|+.+.++.|+.+|.+||.++.
T Consensus 136 vKlFPA-~~~G---------~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 136 VKLFPG-SVYG---------PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred EEECcc-cccC---------HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 222110 0111 26899998865 689999999983 48999999999999999999985
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.80 E-value=8e-07 Score=85.52 Aligned_cols=204 Identities=18% Similarity=0.243 Sum_probs=116.3
Q ss_pred HHHHHHHHcCC-ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC--CCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 52 ETFTRLKKQGK-VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY--SDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 52 ~~f~~~~~~~~-~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf--sDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
+.|...++... ..++.=+.+..+......+..+..+..++|.+|+++.. ......| ..+.+.++
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~-------------~~df~~~~ 167 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEG-------------DRDFRGWL 167 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCC-------------CcCHHHHH
Confidence 55666665543 44444332211101122334444444579999998633 1101111 23455677
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE---EeCCCChH
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL---FTTPTTPT 205 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~---lisp~t~~ 205 (311)
+.++.+++.+++||++-.--+ .-..+.++.+.++|+|++.+.... |-.... .-.+...
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~----g~s~~~a~~l~~~Gvd~I~vsG~G--------------Gt~~~~ie~~r~~~~~- 228 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGF----GISRETAKRLADAGVKAIDVAGAG--------------GTSWARVENYRAKDSD- 228 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCC----CCCHHHHHHHHHcCCCEEEECCCC--------------CCcccccccccccccc-
Confidence 899999999999999864211 012467888999999999875321 000000 0000000
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++ -+.|.. ..| .+ ..+.+.++++.. ++||++.+||++.+++.+.+..|||+|-+|++|.+
T Consensus 229 ~~---------~~~~~~-~~g-------~~--t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 229 QR---------LAEYFA-DWG-------IP--TAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred cc---------cccccc-ccc-------cc--HHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 00 000110 001 11 234566777766 89999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHh
Q 021527 285 LLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.+.+ ..+.-.+.++.+..+|+.
T Consensus 290 ~~~~--g~~~~~~~i~~~~~el~~ 311 (326)
T cd02811 290 AALE--GEEAVIETIEQIIEELRT 311 (326)
T ss_pred HHhc--CHHHHHHHHHHHHHHHHH
Confidence 8754 222234455555556554
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-07 Score=82.41 Aligned_cols=184 Identities=19% Similarity=0.262 Sum_probs=103.7
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC---CcEEEEecCcchhccC
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS---CPIALFTYYNPILKRG 155 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~---iPiilm~Y~n~i~~~g 155 (311)
..+.++.+.++|+|++.+=+--..|- -++. +.++++++... -++.++. |+ .
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R----------------~v~~----~~a~~l~~~~~~~~~~V~v~v--n~----~ 61 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPR----------------YVSP----EQAREIVAALPPFVKRVGVFV--NE----D 61 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCC----------------CCCH----HHHHHHHHhCCCCCcEEEEEe--CC----C
Confidence 35788889999999999853222220 0122 23344433221 2344432 32 2
Q ss_pred HHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE--EecCC----cc
Q 021527 156 VDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL--VSSIG----VT 228 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~--vs~~G----~T 228 (311)
.+...+.+.+.|+|+|.++ +-+.+....++ +..|.+.+..+..++..+ .........+..|+ -+..+ .|
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e~~~~~~~l~---~~~~~~~i~~i~~~~~~~-~~~~~~~~~~aD~il~dt~~~~~~Gg~ 137 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDESPEYCAQLR---ARLGLPVIKAIRVKDEED-LEKAAAYAGEVDAILLDSKSGGGGGGT 137 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHH---hhcCCcEEEEEecCChhh-HHHhhhccccCCEEEEcCCCCCCCCCC
Confidence 3445567788999999998 33334433333 223666663333333222 11111222343444 23211 12
Q ss_pred CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhchhhhcCCchhHHHHHHHHHHH
Q 021527 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
|. ..+ .+.+++++ .++|+++.+|| +++|+.++.+.| +||+.|+|.+...-+ ....+++++|++.
T Consensus 138 g~--~~~---~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg-----~kd~~ki~~~~~~ 202 (203)
T cd00405 138 GK--TFD---WSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPG-----IKDPEKIRAFIEA 202 (203)
T ss_pred cc--eEC---hHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCC-----CcCHHHHHHHHHh
Confidence 21 122 24555554 57899999999 599999999998 999999999986421 1345777887764
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.7e-07 Score=85.76 Aligned_cols=175 Identities=22% Similarity=0.320 Sum_probs=113.8
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
....-+-|..+.+.+.+..+++.| +|++||.+ |-|-..| .+++ |.+.+.+-++++++++..++||.+-
T Consensus 99 i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNi--ScPnt~g-------~~~l--~~~~e~l~~l~~~vk~~~~~Pv~vK 167 (310)
T COG0167 99 IGKNKGGPSEEAWADYARLLEEAGDADAIELNI--SCPNTPG-------GRAL--GQDPELLEKLLEAVKAATKVPVFVK 167 (310)
T ss_pred eEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEc--cCCCCCC-------hhhh--ccCHHHHHHHHHHHHhcccCceEEE
Confidence 344667788899999999999999 99999984 5565665 1222 2333444556777888888999986
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
-- | ....+.+..+.+.+.|+||++...-... +.. +. ..+..+ . .+.+ .-
T Consensus 168 l~--P-~~~di~~iA~~~~~~g~Dgl~~~NT~~~------------~~~-id-~~~~~~------~--~~~~------~G 216 (310)
T COG0167 168 LA--P-NITDIDEIAKAAEEAGADGLIAINTTKS------------GMK-ID-LETKKP------V--LANE------TG 216 (310)
T ss_pred eC--C-CHHHHHHHHHHHHHcCCcEEEEEeeccc------------ccc-cc-cccccc------c--cCcC------CC
Confidence 32 2 1122344555667777777766531100 000 00 000000 0 0111 11
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCC--CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 226 GVTGARASISGHVQTLLREIKESST--KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
|.+|. .+.+--.++|+++++.++ +||+-=+||.|.+|+.+.+.+||+.|.|||+++..
T Consensus 217 GLSG~--~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~ 276 (310)
T COG0167 217 GLSGP--PLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYK 276 (310)
T ss_pred CcCcc--cchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeee
Confidence 34443 344445678999999865 99999999999999999999999999999999984
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.2e-07 Score=85.13 Aligned_cols=155 Identities=23% Similarity=0.243 Sum_probs=103.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+.+.+.++.+.+.|+|.|++.+=. |. .| .+ ...+.++++++.+++|+++-.-
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~--p~-~~--------------~~--~~~~~i~~l~~~~~~pvivK~v------- 180 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDT--PV-LG--------------RR--LTWDDLAWLRSQWKGPLILKGI------- 180 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--CC-CC--------------CC--CCHHHHHHHHHhcCCCEEEeec-------
Confidence 55778888999999999999985311 11 11 11 1235788899888899988632
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
...+.++.+.++|+|+|++..-. |-. + | +|
T Consensus 181 ~s~~~a~~a~~~G~d~I~v~~~g--------------G~~-----------------------~-~-------~g----- 210 (299)
T cd02809 181 LTPEDALRAVDAGADGIVVSNHG--------------GRQ-----------------------L-D-------GA----- 210 (299)
T ss_pred CCHHHHHHHHHCCCCEEEEcCCC--------------CCC-----------------------C-C-------CC-----
Confidence 11456788899999998876311 100 0 0 11
Q ss_pred CchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhH-HHHHHHHHHHHHh
Q 021527 235 SGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKELEKFAKSLKS 308 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~-~~~~~~~~~~l~~ 308 (311)
+ ...+.+.++++.. ++||++.+||++++++.+.+..|||+|-||+.++..+...+ .++ .+.++.+.++|+.
T Consensus 211 ~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g--~~~v~~~i~~l~~el~~ 284 (299)
T cd02809 211 P-ATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGG--EAGVAHVLEILRDELER 284 (299)
T ss_pred c-CHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC--HHHHHHHHHHHHHHHHH
Confidence 1 1235677776655 59999999999999999999999999999999998764211 222 2344445555543
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-08 Score=95.21 Aligned_cols=165 Identities=21% Similarity=0.216 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCC-hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLAD-GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aD-Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
.+++.+.++.++ .|+|+|||.+ |-|-.+ ++..+ ...+...++++.+++..++|+++-.-.|.- ..
T Consensus 111 ~~d~~~~a~~~~-~~ad~lElN~--ScPn~~~~~~~~----------~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~-~~ 176 (295)
T PF01180_consen 111 IEDWAELAKRLE-AGADALELNL--SCPNVPGGRPFG----------QDPELVAEIVRAVREAVDIPVFVKLSPNFT-DI 176 (295)
T ss_dssp HHHHHHHHHHHH-HHCSEEEEES--TSTTSTTSGGGG----------GHHHHHHHHHHHHHHHHSSEEEEEE-STSS-CH
T ss_pred HHHHHHHHHHhc-CcCCceEEEe--eccCCCCccccc----------cCHHHHHHHHHHHHhccCCCEEEEecCCCC-ch
Confidence 478999999988 8899999974 334333 22221 111223346666777779999987533211 01
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
.....+..+.+.|++||...+-- .....+...+... . ...++- |.+|. .+
T Consensus 177 ~~~~~~~~~~~~g~~gi~~~Nt~----------------~~~~~id~~~~~~----~--~~~~~g------GlSG~--~i 226 (295)
T PF01180_consen 177 EPFAIAAELAADGADGIVAINTF----------------GQGDAIDLETRRP----V--LGNGFG------GLSGP--AI 226 (295)
T ss_dssp HHHHHHHHHHTHTECEEEE---E----------------EEEE-EETTTTEE----S--SSGGEE------EEEEG--GG
T ss_pred HHHHHHHHhhccceeEEEEecCc----------------cCcccccchhcce----e--eccccC------CcCch--hh
Confidence 11234455567888888754210 0011112222100 0 001111 23343 23
Q ss_pred CchHHHHHHHHhhcCC--CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 235 SGHVQTLLREIKESST--KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~~--~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+-..+++.++++.++ +||+..+||.|++|+.+.+.+|||.|-|+|+++.
T Consensus 227 ~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~ 278 (295)
T PF01180_consen 227 RPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIY 278 (295)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHH
T ss_pred hhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhh
Confidence 3445678999999887 9999999999999999999999999999999976
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-07 Score=89.22 Aligned_cols=176 Identities=17% Similarity=0.197 Sum_probs=107.2
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLA-DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
+.+|.=+ .|+. .+++.+.++.++++| +|+|||.+-. |-. .+.. .|.+.+.+.++++.+++.+++
T Consensus 93 ~pvI~Si-~G~~-~~~~~~~a~~~~~~g~ad~iElN~Sc--Pn~~~~~~----------~g~d~~~~~~i~~~v~~~~~~ 158 (310)
T PRK02506 93 KPHFLSV-VGLS-PEETHTILKKIQASDFNGLVELNLSC--PNVPGKPQ----------IAYDFETTEQILEEVFTYFTK 158 (310)
T ss_pred CCEEEEE-EeCc-HHHHHHHHHHHhhcCCCCEEEEECCC--CCCCCccc----------cccCHHHHHHHHHHHHHhcCC
Confidence 4555555 3432 478889999999998 9999997543 322 2211 245666777899999988899
Q ss_pred cEEEEecCcchhccCHHHHHHHHH---HcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVR---DIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~---~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
|+++-.--|. ....+.+.+. +.|++|+..-. ..+.... +...+ .+. ......+
T Consensus 159 Pv~vKlsp~~----~~~~~a~~~~~~~~~g~~~i~~~n--------------t~~~~~~--iD~~~--~~~--~~~~~~~ 214 (310)
T PRK02506 159 PLGVKLPPYF----DIVHFDQAAAIFNKFPLAFVNCIN--------------SIGNGLV--IDPED--ETV--VIKPKNG 214 (310)
T ss_pred ccEEecCCCC----CHHHHHHHHHHhCcCceEEEEEec--------------cCCCceE--EecCC--CCc--cccCCCC
Confidence 9888643331 1233333333 33444433221 0000011 11111 010 0000010
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+-..+++.++++.+ ++||+.-+||.|.+|+.+.+.+|||.|-|||+++.
T Consensus 215 ------~GGlSG~--~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 215 ------FGGIGGD--YIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred ------CCcCCch--hccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 1134443 34444567888998876 69999999999999999999999999999999987
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-07 Score=89.31 Aligned_cols=161 Identities=24% Similarity=0.328 Sum_probs=100.4
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-HHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-ATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
..+++-+...+| +.+.+.++.+.+.|+|+|+|.+=- |. +.+.+. .-.+| ..+.+.+.++++.+++.+++|
T Consensus 65 ~~~~vQl~g~~~--~~~~~aa~~~~~~g~d~IdlN~gC--P~---~~v~~~g~Gs~l--l~~p~~~~eiv~av~~a~d~p 135 (321)
T PRK10415 65 GIRTVQIAGSDP--KEMADAARINVESGAQIIDINMGC--PA---KKVNRKLAGSAL--LQYPDLVKSILTEVVNAVDVP 135 (321)
T ss_pred CCEEEEEeCCCH--HHHHHHHHHHHHCCCCEEEEeCCC--CH---HHHcCCCcccHH--hcCHHHHHHHHHHHHHhcCCc
Confidence 345555554555 778888888888999999996332 32 001000 00001 135667778888998888899
Q ss_pred EEEEec--CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 142 IALFTY--YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 142 iilm~Y--~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+.+-.- |++ ......+|++.+.++|+|.+.+. +.+..+ .
T Consensus 136 v~vKiR~G~~~-~~~~~~~~a~~le~~G~d~i~vh--------------------------~rt~~~----------~-- 176 (321)
T PRK10415 136 VTLKIRTGWAP-EHRNCVEIAQLAEDCGIQALTIH--------------------------GRTRAC----------L-- 176 (321)
T ss_pred eEEEEEccccC-CcchHHHHHHHHHHhCCCEEEEe--------------------------cCcccc----------c--
Confidence 877431 110 00112345555555666555443 111000 0
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhc
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVK 284 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~ 284 (311)
.+|. . ..++++++|+.+++||+..+||.|+++++++++ .|||||.+|.++..
T Consensus 177 -------~~G~-----a-~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 177 -------FNGE-----A-EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred -------cCCC-----c-ChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 1111 1 136799999999999999999999999999997 59999999988873
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-07 Score=82.65 Aligned_cols=172 Identities=20% Similarity=0.223 Sum_probs=113.4
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPi 142 (311)
.+++-+..-+ .++..+.+++|.++|+..+|+- |+.| +.++.+++++++ .++-|
T Consensus 9 ~iiaVir~~~--~~~a~~~~~al~~gGi~~iEiT--~~t~----------------------~a~~~I~~l~~~~p~~~v 62 (196)
T PF01081_consen 9 KIIAVIRGDD--PEDAVPIAEALIEGGIRAIEIT--LRTP----------------------NALEAIEALRKEFPDLLV 62 (196)
T ss_dssp SEEEEETTSS--GGGHHHHHHHHHHTT--EEEEE--TTST----------------------THHHHHHHHHHHHTTSEE
T ss_pred CEEEEEEcCC--HHHHHHHHHHHHHCCCCEEEEe--cCCc----------------------cHHHHHHHHHHHCCCCee
Confidence 3666665444 4889999999999999999994 4444 224566666654 34445
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
..-+-.| .+-++.+.++|++=++-|.+. .++.+.|+++|+..++-+. ||.|-...+ +..-.++=+-
T Consensus 63 GAGTV~~-------~e~a~~a~~aGA~FivSP~~~----~~v~~~~~~~~i~~iPG~~--TptEi~~A~-~~G~~~vK~F 128 (196)
T PF01081_consen 63 GAGTVLT-------AEQAEAAIAAGAQFIVSPGFD----PEVIEYAREYGIPYIPGVM--TPTEIMQAL-EAGADIVKLF 128 (196)
T ss_dssp EEES--S-------HHHHHHHHHHT-SEEEESS------HHHHHHHHHHTSEEEEEES--SHHHHHHHH-HTT-SEEEET
T ss_pred EEEeccC-------HHHHHHHHHcCCCEEECCCCC----HHHHHHHHHcCCcccCCcC--CHHHHHHHH-HCCCCEEEEe
Confidence 5544333 456888999999999999764 3477888999999988764 554554333 3222333221
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.. +.-| -..+++.++.-. +++++.-+||+ ++|+.+.+++|+.++.+||.+++.
T Consensus 129 PA-~~~G--------G~~~ik~l~~p~p~~~~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 129 PA-GALG--------GPSYIKALRGPFPDLPFMPTGGVN-PDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp TT-TTTT--------HHHHHHHHHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred cc-hhcC--------cHHHHHHHhccCCCCeEEEcCCCC-HHHHHHHHhCCCEEEEECchhcCH
Confidence 10 0111 136899999865 79999999997 699999999999999999999985
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-06 Score=78.28 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=126.7
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIA 143 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPii 143 (311)
+++-+- ..+.++..+.+++|.++|+..||+- ++.| +.++.+++++++. ++-|.
T Consensus 6 vv~Vir--~~~~~~a~~ia~al~~gGi~~iEit--~~tp----------------------~a~~~I~~l~~~~~~~~vG 59 (201)
T PRK06015 6 VIPVLL--IDDVEHAVPLARALAAGGLPAIEIT--LRTP----------------------AALDAIRAVAAEVEEAIVG 59 (201)
T ss_pred EEEEEE--cCCHHHHHHHHHHHHHCCCCEEEEe--CCCc----------------------cHHHHHHHHHHHCCCCEEe
Confidence 444443 2356899999999999999999994 4444 2356777777654 34455
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
.-+-.| .+-++.+.++|++=++-|.+.. ++.+.|+++|+..++-+ .||.|-+..+ +..-.++=+-.
T Consensus 60 AGTVl~-------~e~a~~ai~aGA~FivSP~~~~----~vi~~a~~~~i~~iPG~--~TptEi~~A~-~~Ga~~vK~FP 125 (201)
T PRK06015 60 AGTILN-------AKQFEDAAKAGSRFIVSPGTTQ----ELLAAANDSDVPLLPGA--ATPSEVMALR-EEGYTVLKFFP 125 (201)
T ss_pred eEeCcC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHcCCCEeCCC--CCHHHHHHHH-HCCCCEEEECC
Confidence 544333 4567889999999998887753 36677899999888765 3555654433 32222332211
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch--hhhcCCchhHHHHHH
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL--LGEAQSPEEGLKELE 300 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~--~~~~~~~~~~~~~~~ 300 (311)
. +.-|. ..+++.+|.-. ++|++.-+||+ ++|+.+.+++|+..++.||.+++. +. +...++++
T Consensus 126 a-~~~GG--------~~yikal~~plp~~~l~ptGGV~-~~n~~~~l~ag~~~~~ggs~l~~~~~~~-----~~~~~~i~ 190 (201)
T PRK06015 126 A-EQAGG--------AAFLKALSSPLAGTFFCPTGGIS-LKNARDYLSLPNVVCVGGSWVAPKELVA-----AGDWAGIT 190 (201)
T ss_pred c-hhhCC--------HHHHHHHHhhCCCCcEEecCCCC-HHHHHHHHhCCCeEEEEchhhCCchhhh-----cccHHHHH
Confidence 0 01110 26899998865 79999999997 799999999999999999999863 22 22345666
Q ss_pred HHHHHHH
Q 021527 301 KFAKSLK 307 (311)
Q Consensus 301 ~~~~~l~ 307 (311)
+.++++.
T Consensus 191 ~~a~~~~ 197 (201)
T PRK06015 191 KLAAEAA 197 (201)
T ss_pred HHHHHHH
Confidence 6666554
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-07 Score=89.26 Aligned_cols=187 Identities=16% Similarity=0.266 Sum_probs=117.7
Q ss_pred CccEEEEEeCCCCChh------hHHHHHHHHHHCCCCEEEEcCCCCCCC-CChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 62 KVALIPYITAGDPDLS------TTAEALKLLDSCGSDIIELGVPYSDPL-ADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~------~~~e~~~~L~~~GaD~IElG~PfsDP~-aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
+..+|.=+=--.|+.. .-.++++.++++||++|-+= .||. -.| + ++.++++
T Consensus 118 ~~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISVL---Td~~~F~G---------------s----~e~L~~v 175 (338)
T PLN02460 118 QPGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSVL---TDEKYFQG---------------S----FENLEAI 175 (338)
T ss_pred CcceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEEe---cCcCcCCC---------------C----HHHHHHH
Confidence 3567766633334321 45799999999999999983 3332 223 1 4678888
Q ss_pred hcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 135 VPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 135 r~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
|+. +++||+.-=+ ... .-=+..+...|||.|++. =|+.++..+|.+.++..|++.+.=+ ++ .+.++..
T Consensus 176 r~~~v~lPvLrKDF----IID--~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEV--H~-~~ElerA 246 (338)
T PLN02460 176 RNAGVKCPLLCKEF----IVD--AWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEV--HD-EREMDRV 246 (338)
T ss_pred HHcCCCCCEeeccc----cCC--HHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEe--CC-HHHHHHH
Confidence 987 8999877321 111 112456788999998774 3555678899999999999876544 33 3334333
Q ss_pred HHhCCceEEEEecCCccCCC-CCCCchHHHHHHHHhh-----c---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 212 VEASEGFVYLVSSIGVTGAR-ASISGHVQTLLREIKE-----S---STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~-~~~~~~~~~~l~~vk~-----~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.+. .|.-.+ |+..-. ..+..++ +...++.. . .++-++...||+|++|+..+.++|+|||.||++|
T Consensus 247 l~~-~ga~iI----GINNRdL~Tf~vDl-~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsL 320 (338)
T PLN02460 247 LGI-EGVELI----GINNRSLETFEVDI-SNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESL 320 (338)
T ss_pred Hhc-CCCCEE----EEeCCCCCcceECH-HHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHH
Confidence 332 133211 222210 1122222 22333333 1 1344667899999999999999999999999999
Q ss_pred hch
Q 021527 283 VKL 285 (311)
Q Consensus 283 v~~ 285 (311)
++.
T Consensus 321 Mr~ 323 (338)
T PLN02460 321 VKQ 323 (338)
T ss_pred hCC
Confidence 993
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-07 Score=87.62 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-----CcEEEEecCcch
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-----CPIALFTYYNPI 151 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-----iPiilm~Y~n~i 151 (311)
+++.+.++.+.+ ++|+||+.+ |-|..+|- ..+.+.+.+.++++.+|+.++ +||.+-.-.|.
T Consensus 148 ~d~~~~~~~~~~-~ad~ielN~--scP~~~g~----------~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~- 213 (327)
T cd04738 148 EDYVIGVRKLGP-YADYLVVNV--SSPNTPGL----------RDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDL- 213 (327)
T ss_pred HHHHHHHHHHHh-hCCEEEEEC--CCCCCCcc----------ccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCC-
Confidence 455555566544 499999974 66655441 113455666778888887765 89988653221
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR 231 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~ 231 (311)
....+.++++.+.++|+|||.+..-..+ ... ...| . . . .+ .-|.+|.
T Consensus 214 ~~~~~~~ia~~l~~aGad~I~~~n~~~~-------------~~~--~~~~-----~---~-~--~~------~gG~sG~- 260 (327)
T cd04738 214 SDEELEDIADVALEHGVDGIIATNTTIS-------------RPG--LLRS-----P---L-A--NE------TGGLSGA- 260 (327)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccc-------------ccc--cccc-----c---c-c--CC------CCccCCh-
Confidence 0012355667777888888766421100 000 0000 0 0 0 00 0022221
Q ss_pred CCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 232 ASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
...+...+.++++|+.+ ++||+.-+||.|++|+.+++..|||.|-|||+++.
T Consensus 261 -~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 261 -PLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred -hhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 12223457899999988 79999999999999999999999999999999975
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-06 Score=75.31 Aligned_cols=173 Identities=16% Similarity=0.162 Sum_probs=105.4
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh--
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL-- 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~-- 152 (311)
|.+...+.++.+.++|+|.|++. |.+ ++.+.+.....++|+++-...+...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~---------g~~------------------i~~~~~~~~~~~~~v~~~v~~~~~~~~ 63 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVN---------PGY------------------VRLAADALAGSDVPVIVVVGFPTGLTT 63 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEC---------HHH------------------HHHHHHHhCCCCCeEEEEecCCCCCCc
Confidence 78899999999999999999997 311 2222221111158877765444311
Q ss_pred ccCHHHHHHHHHHcCCcEEEec-CC--C----hhhHHHHHHHHHH---cCCCeEEEeCCCC--hHHHHHHHHH--hCCce
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVP-DV--P----LEETESLQKEAMK---NKIELVLFTTPTT--PTDRMKAIVE--ASEGF 218 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviip-Dl--p----~ee~~~~~~~~~~---~gi~~I~lisp~t--~~eri~~i~~--~a~gf 218 (311)
.....+.++.+.+.|+|++.+. .. + .++..++...+.+ .++.++....|.. +.+.+.+..+ ...|+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 1123456778999999999874 21 1 2344444444433 4887776665532 2333333322 13466
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+++-...|.+. ... + .+.++++++.. +.|+.+.+|+++++++...+..||||+++|
T Consensus 144 ~~iK~~~~~~~--~~~--~-~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 144 DFIKTSTGFGG--GGA--T-VEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CEEEeCCCCCC--CCC--C-HHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 55532222111 011 1 24566676665 579999999999999999999999999986
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=7e-07 Score=82.58 Aligned_cols=168 Identities=20% Similarity=0.311 Sum_probs=104.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc-chhccCH--
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN-PILKRGV-- 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n-~i~~~g~-- 156 (311)
.+.+...+++|||-|||+ ++ +..| |.|.. +..++.+++.+++|+.+|.--. .-|.|.-
T Consensus 11 ~~~a~~A~~~GAdRiELc---~~-L~~G-------------GlTPS--~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E 71 (248)
T PRK11572 11 MECALTAQQAGADRIELC---AA-PKEG-------------GLTPS--LGVLKSVRERVTIPVHPIIRPRGGDFCYSDGE 71 (248)
T ss_pred HHHHHHHHHcCCCEEEEc---cC-cCCC-------------CcCCC--HHHHHHHHHhcCCCeEEEEecCCCCCCCCHHH
Confidence 577888899999999997 33 2333 45443 3567777778899999994111 0122222
Q ss_pred ----HHHHHHHHHcCCcEEEec----C--CChhhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHHhCCceEEEE
Q 021527 157 ----DNFMSTVRDIGIRGLVVP----D--VPLEETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 157 ----~~fi~~~~~aGadGviip----D--lp~ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+.++.+++.|+|||++. | +..+...++.+.+ .+++..+-- .+ .+.+-++.+.+ -||.-+.
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a--~~~~vTFHRAfD~~~-d~~~al~~l~~--lG~~rIL 146 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA--GPLAVTFHRAFDMCA-NPLNALKQLAD--LGVARIL 146 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh--cCCceEEechhhccC-CHHHHHHHHHH--cCCCEEE
Confidence 345677899999999995 2 2223356666665 356655532 22 22344555555 3776665
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
+ +|...... +-.+.|+++.+.. +.-|++|+||+ ++|+.++.+.|+.-+=
T Consensus 147 T----SGg~~~a~-~g~~~L~~lv~~a~~~~Im~GgGV~-~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 147 T----SGQQQDAE-QGLSLIMELIAASDGPIIMAGAGVR-LSNLHKFLDAGVREVH 196 (248)
T ss_pred C----CCCCCCHH-HHHHHHHHHHHhcCCCEEEeCCCCC-HHHHHHHHHcCCCEEe
Confidence 4 34433322 2335566655543 33399999997 7999999888887653
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.1e-07 Score=82.40 Aligned_cols=172 Identities=19% Similarity=0.149 Sum_probs=116.3
Q ss_pred ChhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 46 PTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 46 ~m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
+.+||++.+.++++.. .+ -+..|+-+.+.+.+.++.+.+ ++|+|||..=..-|-.- ..-+-.+ -..+.+
T Consensus 53 ~~~~i~~e~~~~~~~~--~v--ivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~----~~g~G~~--Ll~dp~ 121 (231)
T TIGR00736 53 FNSYIIEQIKKAESRA--LV--SVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEIT----EIGIGQE--LLKNKE 121 (231)
T ss_pred HHHHHHHHHHHHhhcC--CE--EEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHc----CCCCchh--hcCCHH
Confidence 5679999888885322 23 345567777899999999876 79999996444333111 0000001 123566
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
.+.++++.++ +.++||.+-.-.+.. .-...++.+.+.++|+|++.+..
T Consensus 122 ~l~~iv~av~-~~~~PVsvKiR~~~~-~~~~~~~a~~l~~aGad~i~Vd~------------------------------ 169 (231)
T TIGR00736 122 LLKEFLTKMK-ELNKPIFVKIRGNCI-PLDELIDALNLVDDGFDGIHVDA------------------------------ 169 (231)
T ss_pred HHHHHHHHHH-cCCCcEEEEeCCCCC-cchHHHHHHHHHHcCCCEEEEee------------------------------
Confidence 7778888888 458998887543311 01234678888889999985510
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+..|. +....+.|+++++.+ ++||+..+||.|.|++.++++.|||||-||+++.+
T Consensus 170 --------------------~~~g~----~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 170 --------------------MYPGK----PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred --------------------CCCCC----chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 00010 001247899999987 49999999999999999999999999999998875
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-07 Score=87.51 Aligned_cols=168 Identities=20% Similarity=0.242 Sum_probs=101.8
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
...+++=|...+| +.+.+.++.+.++|+|+|||.. |...=.-|| +--+|. .+.+-+.++++.+++.++
T Consensus 64 e~p~~vQl~g~~p--~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~------~Gs~L~--~~p~~~~eiv~avr~~v~ 133 (333)
T PRK11815 64 EHPVALQLGGSDP--ADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGR------FGACLM--AEPELVADCVKAMKDAVS 133 (333)
T ss_pred CCcEEEEEeCCCH--HHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCC------eeeHHh--cCHHHHHHHHHHHHHHcC
Confidence 4567777766666 7888999999999999999953 332111121 000110 255667789999998888
Q ss_pred CcEEEEe---cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 140 CPIALFT---YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 140 iPiilm~---Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
+||.+-. +.+........+|++.+.++|+|.+++. ..+.. . .
T Consensus 134 ~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh--------------------------~Rt~~-----~----~ 178 (333)
T PRK11815 134 IPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVH--------------------------ARKAW-----L----K 178 (333)
T ss_pred CceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEc--------------------------CCchh-----h----c
Confidence 9988742 1110000011234444444455544433 11110 0 0
Q ss_pred ceEEEEecCCccCCCC-CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARA-SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~-~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|.+|... ..++...+.++++++.+ ++||+..+||++++++.++++ |||||.||.++..
T Consensus 179 ---------g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~ 238 (333)
T PRK11815 179 ---------GLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYH 238 (333)
T ss_pred ---------CCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHh
Confidence 1111110 12222346788998875 899999999999999999997 5999999988764
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-06 Score=77.63 Aligned_cols=171 Identities=22% Similarity=0.272 Sum_probs=102.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc-
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN- 149 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n- 149 (311)
++..++..+.++.+.++|+|.+-+- |. +++..++. .+.|+++.....
T Consensus 17 ~~~~~d~~~~~~~~~~~g~~av~v~-~~-----------------------------~~~~~~~~~~~~~~~i~~~~~~~ 66 (235)
T cd00958 17 NPGLEDPEETVKLAAEGGADAVALT-KG-----------------------------IARAYGREYAGDIPLIVKLNGST 66 (235)
T ss_pred CccccCHHHHHHHHHhcCCCEEEeC-hH-----------------------------HHHhcccccCCCCcEEEEECCCC
Confidence 3455677899999999999999884 11 12221111 133433221100
Q ss_pred chh--ccCHHH---HHHHHHHcCCcEEEec----CCCh----hhHHHHHHHHHHcCCCeEEEeCC--------CChHHHH
Q 021527 150 PIL--KRGVDN---FMSTVRDIGIRGLVVP----DVPL----EETESLQKEAMKNKIELVLFTTP--------TTPTDRM 208 (311)
Q Consensus 150 ~i~--~~g~~~---fi~~~~~aGadGviip----Dlp~----ee~~~~~~~~~~~gi~~I~lisp--------~t~~eri 208 (311)
.+. ....+. .++.+.+.|++++.+. +++. ++..++++.++++|++++.-... .++ +.+
T Consensus 67 ~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~-~~i 145 (235)
T cd00958 67 SLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDP-DLI 145 (235)
T ss_pred CCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCH-HHH
Confidence 000 112233 3678899999988442 2322 24667888889999997764332 122 222
Q ss_pred HHHH--HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCC--CCHH----HHHHHHHcCCcEEEEhh
Q 021527 209 KAIV--EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGI--SKPE----HVQQVAGWGADGVIVGS 280 (311)
Q Consensus 209 ~~i~--~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGI--st~e----~v~~v~~~GADGvIVGS 280 (311)
...+ ....|..|+-.. .|+ + .+.++++.+.+++||++-+|+ .|++ +++++.+.||+|+.+|+
T Consensus 146 ~~~~~~a~~~GaD~Ik~~--~~~-------~-~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 146 AYAARIGAELGADIVKTK--YTG-------D-AESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred HHHHHHHHHHCCCEEEec--CCC-------C-HHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEech
Confidence 2211 112466666432 222 1 356888888888998885565 5664 49999999999999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
++.+
T Consensus 216 ~i~~ 219 (235)
T cd00958 216 NIFQ 219 (235)
T ss_pred hhhc
Confidence 9996
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-06 Score=83.45 Aligned_cols=171 Identities=17% Similarity=0.230 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCC------------CCCCCChHHHHHH-
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPY------------SDPLADGPVIQAA- 113 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~Pf------------sDP~aDGp~Iq~a- 113 (311)
.+++.-+. ..+...|-.|+ ..|.+.+.+.++..+++|+..|-+ +.|. +-|. -+.+...
T Consensus 114 slEeva~~--~~~~~wfQlY~---~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~--~~~~~~~~ 186 (364)
T PLN02535 114 TVEEVASS--CNAVRFLQLYV---YKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQ--LKNFEGLL 186 (364)
T ss_pred CHHHHHhc--CCCCeEEEEec---cCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcc--hhhHhhhh
Confidence 34554332 23456777888 677889999999999999999888 2222 2221 0011100
Q ss_pred -----------HH----HHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh
Q 021527 114 -----------AT----RSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL 178 (311)
Q Consensus 114 -----------~~----~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ 178 (311)
.. .-+....++ +.++.+|+.+++||++-+-.+ .+..+.+.++|+|+|++..-.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~tW----~~i~~lr~~~~~PvivKgV~~-------~~dA~~a~~~GvD~I~vsn~G- 254 (364)
T PLN02535 187 STEVVSDKGSGLEAFASETFDASLSW----KDIEWLRSITNLPILIKGVLT-------REDAIKAVEVGVAGIIVSNHG- 254 (364)
T ss_pred ccCCCccccccHHHHHHhccCCCCCH----HHHHHHHhccCCCEEEecCCC-------HHHHHHHHhcCCCEEEEeCCC-
Confidence 00 000112333 567778888889988875432 345777888888888775321
Q ss_pred hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEe
Q 021527 179 EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVG 256 (311)
Q Consensus 179 ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vG 256 (311)
| |. .+ ..+...+.+.++++.. ++||++.
T Consensus 255 -------------G--------------r~----------------~d-------~~~~t~~~L~ev~~av~~~ipVi~d 284 (364)
T PLN02535 255 -------------A--------------RQ----------------LD-------YSPATISVLEEVVQAVGGRVPVLLD 284 (364)
T ss_pred -------------c--------------CC----------------CC-------CChHHHHHHHHHHHHHhcCCCEEee
Confidence 0 00 00 0011234566665543 6999999
Q ss_pred eCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 257 FGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 257 fGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
+||++..|+.+.+..|||+|.||+++...+..
T Consensus 285 GGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~ 316 (364)
T PLN02535 285 GGVRRGTDVFKALALGAQAVLVGRPVIYGLAA 316 (364)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHHHhhhhh
Confidence 99999999999999999999999999997753
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-05 Score=75.13 Aligned_cols=209 Identities=18% Similarity=0.204 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++. +-++..|= ..|++...-++++.++.+..+|---.|-...+. ..+.+.
T Consensus 5 ~~~~~l~~A~~~-~yaV~Afn---~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~-----------------~~~~~~ 63 (281)
T PRK06806 5 QMKELLKKANQE-NYGVGAFS---VANMEMVMGAIKAAEELNSPIILQIAEVRLNHS-----------------PLHLIG 63 (281)
T ss_pred cHHHHHHHHHHC-CceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccC-----------------ChHHHH
Confidence 356777766554 34555555 347888889999999999888765433322222 222333
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCe----EEE
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIEL----VLF 198 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~----I~l 198 (311)
.+++...++.++||.+-. + +....++++.+.+.|++.|-+ .++|.+| ..++++.|+++|+.+ .-+
T Consensus 64 ~~~~~~a~~~~vpv~lHl--D---H~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl 138 (281)
T PRK06806 64 PLMVAAAKQAKVPVAVHF--D---HGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRV 138 (281)
T ss_pred HHHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE
Confidence 456666667899998853 2 222346888999999999988 4677765 667889999998742 111
Q ss_pred -----------eCCCChHHHHHHHHHhCCceEEEEecCC-ccCCCCCCCchHHHHHHHHhhcCCCcEEEee--CCCCHHH
Q 021527 199 -----------TTPTTPTDRMKAIVEASEGFVYLVSSIG-VTGARASISGHVQTLLREIKESSTKPVAVGF--GISKPEH 264 (311)
Q Consensus 199 -----------isp~t~~eri~~i~~~a~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGf--GIst~e~ 264 (311)
.+-+++ +..++..+ ..|..|+.-..| +.|.....+.--.+.++++++.+++|++.=+ ||+ +|+
T Consensus 139 G~~d~~~~~~g~s~t~~-eea~~f~~-~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-~e~ 215 (281)
T PRK06806 139 GGSEDGSEDIEMLLTST-TEAKRFAE-ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-PED 215 (281)
T ss_pred CCccCCcccccceeCCH-HHHHHHHH-hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-HHH
Confidence 112343 44444433 356677743223 3443322233234779999998999987755 885 899
Q ss_pred HHHHHHcCCcEEEEhhHhhchh
Q 021527 265 VQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 265 v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+.++.+.|++++-|+|++....
T Consensus 216 ~~~~i~~G~~kinv~T~i~~a~ 237 (281)
T PRK06806 216 FKKCIQHGIRKINVATATFNSV 237 (281)
T ss_pred HHHHHHcCCcEEEEhHHHHHHH
Confidence 9999999999999999998744
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-06 Score=88.27 Aligned_cols=189 Identities=15% Similarity=0.183 Sum_probs=123.2
Q ss_pred cCCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 60 QGKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLA-DGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
.++..+|.=+=.-.|.. ..-.++++.++++||+.|-+= .||-. .| + ++.++
T Consensus 47 ~~~~~vIaEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVl---Te~~~F~G---------------s----~~~l~ 104 (695)
T PRK13802 47 ADGIPVIAEIKRASPSKGHLSDIPDPAALAREYEQGGASAISVL---TEGRRFLG---------------S----LDDFD 104 (695)
T ss_pred CCCCeEEEEeecCCCCCCcCCCCCCHHHHHHHHHHcCCcEEEEe---cCcCcCCC---------------C----HHHHH
Confidence 33456777774445543 256888999999999999994 44322 23 2 35778
Q ss_pred HhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-C-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHH
Q 021527 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-D-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-D-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~ 210 (311)
++|+.+++||+--= +..- +.-+..+...|+|.|++. . |+.++..++.+.++..|++.+.=+ .+. +.++.
T Consensus 105 ~vr~~v~~PvLrKD----FIid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEv--h~~-~el~~ 175 (695)
T PRK13802 105 KVRAAVHIPVLRKD----FIVT--DYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVET--HTR-EEIER 175 (695)
T ss_pred HHHHhCCCCEEecc----ccCC--HHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEe--CCH-HHHHH
Confidence 88888999977632 1110 224567888999998874 3 445678999999999999977644 333 33443
Q ss_pred HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 211 i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..+....+| -+-.... ..+..++ +...++.... +..++...||++++|+..+.+.|+|||.||++|++.
T Consensus 176 a~~~ga~ii-GINnRdL----~tf~vd~-~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 176 AIAAGAKVI-GINARNL----KDLKVDV-NKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHhCCCCEE-EEeCCCC----ccceeCH-HHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 333333332 2211100 0111222 3344444443 466778899999999999999999999999999994
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-07 Score=87.91 Aligned_cols=161 Identities=17% Similarity=0.260 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-------CcEEEEecC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-------CPIALFTYY 148 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-------iPiilm~Y~ 148 (311)
.+++.+.++.+.+ .+|+|||.+ |-|-.-| +..+.+.+.+.++++.+++.++ +||++-...
T Consensus 153 ~~dy~~~~~~~~~-~ad~iElNl--ScPn~~~----------~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP 219 (335)
T TIGR01036 153 KEDYAACLRKLGP-LADYLVVNV--SSPNTPG----------LRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAP 219 (335)
T ss_pred HHHHHHHHHHHhh-hCCEEEEEc--cCCCCCC----------cccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCC
Confidence 4566666666655 499999975 4443222 1122334445556666665444 999997654
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
|.-. -.+..+++.+.++|+||+++-+--.+ .+. +..|.. ..+ .-|.+
T Consensus 220 ~~~~-~~i~~ia~~~~~~GadGi~l~NT~~~-------------~~~--~~~~~~-----------~~~------~GGlS 266 (335)
T TIGR01036 220 DLTE-SDLEDIADSLVELGIDGVIATNTTVS-------------RSL--VQGPKN-----------SDE------TGGLS 266 (335)
T ss_pred CCCH-HHHHHHHHHHHHhCCcEEEEECCCCc-------------ccc--ccCccc-----------cCC------CCccc
Confidence 4110 02466788888999999987643211 011 001110 001 11345
Q ss_pred CCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 229 GARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|. .+.+-..++++++++.+ ++||+.-+||.|+||+.+.+.+|||.|.|||+++.
T Consensus 267 G~--~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 267 GK--PLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred CH--HHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 53 23344567888888876 68999999999999999999999999999999986
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-06 Score=80.32 Aligned_cols=68 Identities=25% Similarity=0.371 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhH-HHHHHHHHHHHHh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKELEKFAKSLKS 308 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~-~~~~~~~~~~l~~ 308 (311)
.+.+.++++.+++||++.+||++..|+.+.+..|||+|.||+.+...+... .+++ .+.++.+..+|+.
T Consensus 278 ~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~--G~~gv~~~l~~l~~el~~ 346 (361)
T cd04736 278 IEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAAR--GEAGVSEVLRLLKEEIDR 346 (361)
T ss_pred HHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 345667777678999999999999999999999999999999999988532 2333 3344444455554
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-06 Score=82.06 Aligned_cols=158 Identities=13% Similarity=0.231 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEecCcc--hhcc-------------------C--HHHHHHHHHHcCCcEEEec-CCCh
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFTYYNP--ILKR-------------------G--VDNFMSTVRDIGIRGLVVP-DVPL 178 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~Y~n~--i~~~-------------------g--~~~fi~~~~~aGadGviip-Dlp~ 178 (311)
+.+++-+.++++|+.++.|+.+.....+ .... + .++.++.+.+.+++.+.+. ..|.
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~ 125 (330)
T PF03060_consen 46 TPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPP 125 (330)
T ss_dssp SHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-
T ss_pred ChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccch
Confidence 3455667888888877779877543221 1100 0 0122223333445587775 5554
Q ss_pred hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhcCCCcEEEee
Q 021527 179 EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKESSTKPVAVGF 257 (311)
Q Consensus 179 ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~~~~Pv~vGf 257 (311)
+ ++.+.++++|+..+..++ +..+ .++..+..-..+.+... --|.+.+.+ .+...++.++++..++||++.+
T Consensus 126 ~---~~i~~l~~~gi~v~~~v~--s~~~-A~~a~~~G~D~iv~qG~--eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAG 197 (330)
T PF03060_consen 126 P---EVIERLHAAGIKVIPQVT--SVRE-ARKAAKAGADAIVAQGP--EAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAG 197 (330)
T ss_dssp H---HHHHHHHHTT-EEEEEES--SHHH-HHHHHHTT-SEEEEE-T--TSSEE---SSG-HHHHHHHHHHH-SS-EEEES
T ss_pred H---HHHHHHHHcCCccccccC--CHHH-HHHhhhcCCCEEEEecc--ccCCCCCccccceeeHHHHHhhhcCCcEEEec
Confidence 3 356778899987776553 4333 33444443333333311 122222211 2477899999999999999999
Q ss_pred CCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 258 GIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
||.+.+++..++..|||||.+||.|+-.-+.
T Consensus 198 GI~dg~~iaaal~lGA~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 198 GIADGRGIAAALALGADGVQMGTRFLATEES 228 (330)
T ss_dssp S--SHHHHHHHHHCT-SEEEESHHHHTSTTS
T ss_pred CcCCHHHHHHHHHcCCCEeecCCeEEecccc
Confidence 9999999999999999999999999976653
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.6e-06 Score=80.51 Aligned_cols=177 Identities=19% Similarity=0.269 Sum_probs=104.7
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCC--CCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDP--LADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP--~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
+..+..+..++|.+|+++++--. ...| ..+.+.+++.++++++.+++||++-.--+. -..+
T Consensus 132 ~~~~~i~~i~adal~i~ln~~q~~~~p~g-------------~~~f~~~le~i~~i~~~~~vPVivK~~g~g----~~~~ 194 (333)
T TIGR02151 132 EAQEAIDMIEADALAIHLNVLQELVQPEG-------------DRNFKGWLEKIAEICSQLSVPVIVKEVGFG----ISKE 194 (333)
T ss_pred HHHHHHHHhcCCCEEEcCcccccccCCCC-------------CcCHHHHHHHHHHHHHhcCCCEEEEecCCC----CCHH
Confidence 34444444568888888754111 1111 124456778999999999999998632111 1246
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchH
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHV 238 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~ 238 (311)
.++.+.++|+|++.+.--. |-.. ...+..+.. ....+ -|.. ..| . ..
T Consensus 195 ~a~~L~~aGvd~I~Vsg~g--------------Gt~~-------~~ie~~r~~-~~~~~-~~~~-~~g-------~--~t 241 (333)
T TIGR02151 195 VAKLLADAGVSAIDVAGAG--------------GTSW-------AQVENYRAK-GSNLA-SFFN-DWG-------I--PT 241 (333)
T ss_pred HHHHHHHcCCCEEEECCCC--------------CCcc-------cchhhhccc-ccccc-hhhh-ccc-------H--hH
Confidence 7888899999998875321 1000 000111000 00000 0100 001 1 12
Q ss_pred HHHHHHHhh-cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 239 QTLLREIKE-SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 239 ~~~l~~vk~-~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.+.+.++++ ..++||++.+||++++++.+++..|||+|-+|+++.+...+. .++.-.+.++.+.++|+.
T Consensus 242 ~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~-g~~~v~~~i~~~~~eL~~ 311 (333)
T TIGR02151 242 AASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDE-GEEAVIEEIELIIEELKV 311 (333)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 345666666 467999999999999999999999999999999999876422 223334455566666654
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.1e-06 Score=80.79 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=105.9
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCC--------------CCCCC----CCh--------HHHHHHH
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVP--------------YSDPL----ADG--------PVIQAAA 114 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~P--------------fsDP~----aDG--------p~Iq~a~ 114 (311)
+...|..|+ ..|.+.+.+.++..+++|+..|-+.+- |.-|. .+. +.. ...
T Consensus 125 ~~~wfQlY~---~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~-~~~ 200 (351)
T cd04737 125 GPKWFQLYM---SKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGI-SEI 200 (351)
T ss_pred CCeEEEEee---cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcch-hhh
Confidence 356677787 667788999999999999999998541 22221 000 000 000
Q ss_pred HHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCC
Q 021527 115 TRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIE 194 (311)
Q Consensus 115 ~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~ 194 (311)
...+....++ +.++++|+.+++||++-+-. ..++.+.+.+.|+|++++.+-. | .
T Consensus 201 ~~~~~~~~~~----~~l~~lr~~~~~PvivKgv~-------~~~dA~~a~~~G~d~I~vsnhG--------------G-r 254 (351)
T cd04737 201 YAAAKQKLSP----ADIEFIAKISGLPVIVKGIQ-------SPEDADVAINAGADGIWVSNHG--------------G-R 254 (351)
T ss_pred hhhccCCCCH----HHHHHHHHHhCCcEEEecCC-------CHHHHHHHHHcCCCEEEEeCCC--------------C-c
Confidence 0111122333 46778888888999997521 2467888889999998886421 1 0
Q ss_pred eEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcC
Q 021527 195 LVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWG 272 (311)
Q Consensus 195 ~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~G 272 (311)
.+ + + . +. ..+.+.++++.. ++||++.+||.+..|+.+.+..|
T Consensus 255 ~l-----------------------d-----~---~----~~-~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalG 298 (351)
T cd04737 255 QL-----------------------D-----G---G----PA-SFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASG 298 (351)
T ss_pred cC-----------------------C-----C---C----ch-HHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC
Confidence 00 0 0 0 11 123455555544 59999999999999999999999
Q ss_pred CcEEEEhhHhhchhh
Q 021527 273 ADGVIVGSAMVKLLG 287 (311)
Q Consensus 273 ADGvIVGSaiv~~~~ 287 (311)
||+|-||+++...+.
T Consensus 299 A~~V~iGr~~l~~la 313 (351)
T cd04737 299 ADAVAVGRPVLYGLA 313 (351)
T ss_pred CCEEEECHHHHHHHh
Confidence 999999999999874
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-05 Score=73.17 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=136.6
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..++. +.++..|= -.+++...-++++.++.+..+|---.|-.--+..| .+.+..
T Consensus 4 ~~~~l~~A~~~-~yav~Afn---~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~----------------~~~~~~ 63 (282)
T TIGR01859 4 GKEILQKAKKE-GYAVGAFN---FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGG----------------YKMAVA 63 (282)
T ss_pred HHHHHHHHHHC-CceEEEEE---ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCc----------------HHHHHH
Confidence 35666665554 34555555 34788899999999999999887642221111111 234566
Q ss_pred HHHHhhccCC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE-----
Q 021527 130 MLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL----- 197 (311)
Q Consensus 130 ~i~~ir~~~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~----- 197 (311)
+++.+.++.+ +|+.+-. + +....+.++.+.+.|++.|.+ -++|.+| ..++++.|+++|+.+-.
T Consensus 64 ~~~~~a~~~~~vpv~lhl--D---H~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~ 138 (282)
T TIGR01859 64 MVKTLIERMSIVPVALHL--D---HGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTL 138 (282)
T ss_pred HHHHHHHHCCCCeEEEEC--C---CCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCC
Confidence 7888888888 9999853 1 222346888999999999888 4788776 56788888999875331
Q ss_pred --------E--eCCCChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEee--CCCCHHH
Q 021527 198 --------F--TTPTTPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGF--GISKPEH 264 (311)
Q Consensus 198 --------l--isp~t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGf--GIst~e~ 264 (311)
. .+-+++ +..++..+ ..|..|+.-..|+ .|.-...+.--.+.|+++++.+++|++.=+ ||+ .++
T Consensus 139 gg~ed~~~g~~~~~t~~-eea~~f~~-~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~ 215 (282)
T TIGR01859 139 GGIEDGVDEKEAELADP-DEAEQFVK-ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQ 215 (282)
T ss_pred cCccccccccccccCCH-HHHHHHHH-HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHH
Confidence 0 122344 44444433 2366677433332 222222222224678999998899986644 886 799
Q ss_pred HHHHHHcCCcEEEEhhHhhchh
Q 021527 265 VQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 265 v~~v~~~GADGvIVGSaiv~~~ 286 (311)
++++.+.|++++-|+|.+....
T Consensus 216 i~~~i~~Gi~kiNv~T~l~~a~ 237 (282)
T TIGR01859 216 IKKAIKLGIAKINIDTDCRIAF 237 (282)
T ss_pred HHHHHHcCCCEEEECcHHHHHH
Confidence 9999999999999999987654
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.4e-06 Score=75.68 Aligned_cols=183 Identities=17% Similarity=0.215 Sum_probs=109.6
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+ .+..+|++++=+.+==-|- +. ...-+++++.+... + +.++ -|
T Consensus 23 Tgky~s~~~~~~---ai~aSg~evvTvalRR~~~--~~-------------~~~~~~~l~~i~~~----~--~~~L--PN 76 (267)
T CHL00162 23 TGKYKSLKDAIQ---SIEASGCEIVTVAIRRLNN--NL-------------LNDNSNLLNGLDWN----K--LWLL--PN 76 (267)
T ss_pred cCCCCCHHHHHH---HHHHhCCcEEEEEEEEecc--Cc-------------CCCcchHHHhhchh----c--cEEC--Cc
Confidence 667777766555 4556999999885322111 00 00112334444321 2 2232 25
Q ss_pred chhccCHHHHHHH---HHHcC-------CcE---EEecC----CC-hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 150 PILKRGVDNFMST---VRDIG-------IRG---LVVPD----VP-LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 150 ~i~~~g~~~fi~~---~~~aG-------adG---viipD----lp-~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
+--.+..++-++. +.+++ -+= =+++| +| +.|..+-.+.+-+.|+.+.++++++-.. .+++
T Consensus 77 TaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~--a~rL 154 (267)
T CHL00162 77 TAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPML--AKHL 154 (267)
T ss_pred CcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHH--HHHH
Confidence 4444555554443 35554 121 12333 22 1344555566667899998988876432 2223
Q ss_pred HHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 212 VEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+ -|..-++..-..-|+..++.+ ...|+.+++..++||++|-||.+++|+.++.+.|||||-+.|++.+
T Consensus 155 ed--~Gc~aVMPlgsPIGSg~Gl~n--~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 155 ED--IGCATVMPLGSPIGSGQGLQN--LLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred HH--cCCeEEeeccCcccCCCCCCC--HHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence 22 355455443334455455543 3578899998899999999999999999999999999999999996
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-06 Score=78.00 Aligned_cols=167 Identities=20% Similarity=0.321 Sum_probs=94.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc-chhccCH--
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN-PILKRGV-- 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n-~i~~~g~-- 156 (311)
.+.+...+++|||-|||. ++.. . .|.|.. +..++.+++..++|+.+|.--. .-|.|..
T Consensus 10 ~~~a~~A~~~GAdRiELc---~~l~-~-------------GGlTPS--~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E 70 (201)
T PF03932_consen 10 LEDALAAEAGGADRIELC---SNLE-V-------------GGLTPS--LGLIRQAREAVDIPVHVMIRPRGGDFVYSDEE 70 (201)
T ss_dssp HHHHHHHHHTT-SEEEEE---BTGG-G-------------T-B-----HHHHHHHHHHTTSEEEEE--SSSS-S---HHH
T ss_pred HHHHHHHHHcCCCEEEEC---CCcc-C-------------CCcCcC--HHHHHHHHhhcCCceEEEECCCCCCccCCHHH
Confidence 567777899999999997 3322 2 244443 4577788878999999994111 0122222
Q ss_pred ----HHHHHHHHHcCCcEEEec----CCCh--hhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHHhCCceEEEE
Q 021527 157 ----DNFMSTVRDIGIRGLVVP----DVPL--EETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 157 ----~~fi~~~~~aGadGviip----Dlp~--ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+.++.+++.|+||+++. |-.+ +...++.+.++ |++..+-- .+. +.+-++.+.+. ||..+.
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d-~~~al~~L~~l--G~~rVL 145 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG--GMPVTFHRAFDEVPD-PEEALEQLIEL--GFDRVL 145 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSST-HHHHHHHHHHH--T-SEEE
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCC-HHHHHHHHHhc--CCCEEE
Confidence 346677899999999995 3222 23556666654 66666532 222 34556666564 776666
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHH-cCCcEE
Q 021527 223 SSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAG-WGADGV 276 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~-~GADGv 276 (311)
|+ |........+ +.|+++.+. ..+-|++|+||+ ++|+..+.+ .|+.-+
T Consensus 146 TS----Gg~~~a~~g~-~~L~~lv~~a~~~i~Im~GgGv~-~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 146 TS----GGAPTALEGI-ENLKELVEQAKGRIEIMPGGGVR-AENVPELVEETGVREI 196 (201)
T ss_dssp ES----TTSSSTTTCH-HHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHHT-SEE
T ss_pred CC----CCCCCHHHHH-HHHHHHHHHcCCCcEEEecCCCC-HHHHHHHHHhhCCeEE
Confidence 43 3333333332 445554333 357799999997 599999987 665543
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-06 Score=79.44 Aligned_cols=179 Identities=12% Similarity=0.161 Sum_probs=114.3
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCC-CCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCcc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDP-LADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYNP 150 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP-~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n~ 150 (311)
-+.+...++++.|+++|+|.||+|+|-+.+ ...|... ..- .+.++++++. .+.++..|.-.+-
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~-----------~~~---~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSA-----------FCD---DEFLRRLLGDSKGNTKIAVMVDYGN 82 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCcc-----------CCC---HHHHHHHHhhhccCCEEEEEECCCC
Confidence 345788999999999999999999998654 1112110 111 1244444433 2577888764321
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecC--CChhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh----CCceEEEE
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPD--VPLEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA----SEGFVYLV 222 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipD--lp~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~----a~gfiY~v 222 (311)
...++++.+.++|++.+-+.+ --+++..+..+.++++|+++.+.+ +..++++.+.++++. ...-+|+.
T Consensus 83 ----~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 83 ----DDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred ----CCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 235688889999999977753 224567778889999998765542 233445555444443 23346666
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCC--CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESST--KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...| . ..|..+.++++.+|+..+ +|+-+ .+|... .+....+++|||.|
T Consensus 159 DT~G---~--~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~-AN~laA~~aGa~~v 212 (266)
T cd07944 159 DSFG---S--MYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLAL-ANTLEAIELGVEII 212 (266)
T ss_pred cCCC---C--CCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHH-HHHHHHHHcCCCEE
Confidence 5444 3 356788999999999875 66644 334433 45556678999865
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-05 Score=78.31 Aligned_cols=173 Identities=15% Similarity=0.240 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCC------------CCCCCC-ChHHHHH-
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVP------------YSDPLA-DGPVIQA- 112 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~P------------fsDP~a-DGp~Iq~- 112 (311)
.+++.-+. ..+...|-.|+ +.|.+.+.+.++..+++|+..|-+ +.| |+-|.. .-.....
T Consensus 111 slEeIa~a--~~~~~wfQLY~---~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~ 185 (366)
T PLN02979 111 SVEEVAST--GPGIRFFQLYV---YKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGL 185 (366)
T ss_pred CHHHHHhc--cCCCeEEEEee---cCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhc
Confidence 34554332 24567788888 778889999999999999999988 222 222210 0000000
Q ss_pred -----------HHH----HHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC
Q 021527 113 -----------AAT----RSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP 177 (311)
Q Consensus 113 -----------a~~----~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp 177 (311)
... ..+....++ +.++.+|+.+++||++-+-. ..+..+.+.++|+||+++..-.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~ltW----~dl~wlr~~~~~PvivKgV~-------~~~dA~~a~~~Gvd~I~VsnhG 254 (366)
T PLN02979 186 DLGKMDEANDSGLASYVAGQIDRTLSW----KDVQWLQTITKLPILVKGVL-------TGEDARIAIQAGAAGIIVSNHG 254 (366)
T ss_pred cccCCCcccchhHHHHHhhcCCCCCCH----HHHHHHHhccCCCEEeecCC-------CHHHHHHHHhcCCCEEEECCCC
Confidence 000 001112333 56788888899999997642 2567788999999998776331
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEE
Q 021527 178 LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAV 255 (311)
Q Consensus 178 ~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v 255 (311)
- + +++ ..+ ...+.+.++++.. ++||++
T Consensus 255 G----------r--qld--------------------------------------~~p-~t~~~L~ei~~~~~~~~~Vi~ 283 (366)
T PLN02979 255 A----------R--QLD--------------------------------------YVP-ATISALEEVVKATQGRIPVFL 283 (366)
T ss_pred c----------C--CCC--------------------------------------Cch-hHHHHHHHHHHHhCCCCeEEE
Confidence 0 0 000 001 1123455554432 489999
Q ss_pred eeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 256 GFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 256 GfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
.+||++..|+.+.+-.|||+|-||..+...+..
T Consensus 284 dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~ 316 (366)
T PLN02979 284 DGGVRRGTDVFKALALGASGIFIGRPVVFSLAA 316 (366)
T ss_pred eCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh
Confidence 999999999999999999999999999987753
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.5e-06 Score=81.30 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=49.4
Q ss_pred HHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 240 TLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 240 ~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+.+.++++.. ++||++.+||++..|+.+.+..|||+|-+|+.++..+...+ .+.-.+.++.+..+|+.
T Consensus 288 ~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G-~~gv~~~l~~l~~El~~ 357 (381)
T PRK11197 288 RALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAG-QAGVANLLDLIEKEMRV 357 (381)
T ss_pred HHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhcc-HHHHHHHHHHHHHHHHH
Confidence 4455554433 68999999999999999999999999999999999985421 22223344555555554
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-05 Score=72.57 Aligned_cols=171 Identities=20% Similarity=0.243 Sum_probs=117.5
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-CcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iPi 142 (311)
.+|+-|..-+| ++.+..+++|.++|++.||+ ||+.|. -++.|++++++.. +=|
T Consensus 14 ~vI~Vlr~~~~--e~a~~~a~Ali~gGi~~IEI--Tl~sp~----------------------a~e~I~~l~~~~p~~lI 67 (211)
T COG0800 14 PVVPVIRGDDV--EEALPLAKALIEGGIPAIEI--TLRTPA----------------------ALEAIRALAKEFPEALI 67 (211)
T ss_pred CeeEEEEeCCH--HHHHHHHHHHHHcCCCeEEE--ecCCCC----------------------HHHHHHHHHHhCcccEE
Confidence 47777765555 89999999999999999999 565552 2357777776543 223
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.--+-.| .+-++.+.++|++=++-|.+.. ++.+.|.++|+..++-+. |+.|-+..+ +..-..+=+-
T Consensus 68 GAGTVL~-------~~q~~~a~~aGa~fiVsP~~~~----ev~~~a~~~~ip~~PG~~--TptEi~~Al-e~G~~~lK~F 133 (211)
T COG0800 68 GAGTVLN-------PEQARQAIAAGAQFIVSPGLNP----EVAKAANRYGIPYIPGVA--TPTEIMAAL-ELGASALKFF 133 (211)
T ss_pred ccccccC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHhCCCcccCCCC--CHHHHHHHH-HcChhheeec
Confidence 3323333 3457789999999998898853 367788999998887653 554655433 3222222222
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.. +.|. ..+++.++.- .+++++.-+||+ ++|++..+..|+.+|=+||.+++
T Consensus 134 Pa~-~~Gg--------~~~~ka~~gP~~~v~~~pTGGVs-~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 134 PAE-VVGG--------PAMLKALAGPFPQVRFCPTGGVS-LDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred Ccc-ccCc--------HHHHHHHcCCCCCCeEeecCCCC-HHHHHHHHhCCceEEecCccccC
Confidence 111 2221 2467766664 378999999997 78999999999888888999995
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=85.92 Aligned_cols=165 Identities=17% Similarity=0.250 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc------cCCCcEEEEecCc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP------QMSCPIALFTYYN 149 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~------~~~iPiilm~Y~n 149 (311)
.+++.+.++.+.. .+|+|||.+-. |-.-| .+.+.....+.++++.+++.++ ..++||++-.-.|
T Consensus 203 ~~Dy~~~~~~~~~-~aDylelNiSc--PNtpg-------lr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPd 272 (409)
T PLN02826 203 AADYVQGVRALSQ-YADYLVINVSS--PNTPG-------LRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPD 272 (409)
T ss_pred HHHHHHHHHHHhh-hCCEEEEECCC--CCCCC-------cccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCC
Confidence 4667777777764 49999998544 33222 1222222334455555554443 2468998865222
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG 229 (311)
.- .-.+.++++.+.+.|+|||++.+-.+.. +. .+... .... ..-|.+|
T Consensus 273 l~-~~di~~ia~~a~~~G~dGIi~~NTt~~r--------------------~~----dl~~~-~~~~------~~GGlSG 320 (409)
T PLN02826 273 LS-KEDLEDIAAVALALGIDGLIISNTTISR--------------------PD----SVLGH-PHAD------EAGGLSG 320 (409)
T ss_pred CC-HHHHHHHHHHHHHcCCCEEEEEcccCcC--------------------cc----chhcc-cccc------cCCCcCC
Confidence 00 0123456666777777777665421110 00 00000 0000 0113444
Q ss_pred CCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 230 ARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. .+.+...+.+.++++.+ ++||+.-+||.|.+|+.+.+.+||+.|-|||+++.
T Consensus 321 ~--pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 321 K--PLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred c--cccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 3 23344567889998877 68999999999999999999999999999999987
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-06 Score=80.21 Aligned_cols=162 Identities=19% Similarity=0.184 Sum_probs=104.1
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-HHHHHHcCCCHHHHHHHHHHhhccC--
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-ATRSLARGTNFNAILSMLKEVVPQM-- 138 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-~~~Al~~G~~~~~~~~~i~~ir~~~-- 138 (311)
...+++=|...+| +.+.+.++.+.+.|+|.|||..=- | .|.+.+- .-.+|. -+.+.+.++++.+++.+
T Consensus 62 e~p~~vQl~g~~p--~~~~~aA~~~~~~g~d~IdiN~GC--P---~~~v~~~g~Gs~Ll--~~~~~~~eiv~avr~~~~~ 132 (312)
T PRK10550 62 GTLVRIQLLGQYP--QWLAENAARAVELGSWGVDLNCGC--P---SKTVNGSGGGATLL--KDPELIYQGAKAMREAVPA 132 (312)
T ss_pred CCcEEEEeccCCH--HHHHHHHHHHHHcCCCEEEEeCCC--C---chHHhcCCCchHhh--cCHHHHHHHHHHHHHhcCC
Confidence 4568887777777 778889999999999999995322 2 1111110 000111 35566788888888876
Q ss_pred CCcEEEEe--cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 139 SCPIALFT--YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 139 ~iPiilm~--Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++||.+-. .|+.... ..+|++.+.++|+|.+.++ +.|. .+
T Consensus 133 ~~pVsvKiR~g~~~~~~--~~~~a~~l~~~Gvd~i~Vh--------------------------~Rt~----------~~ 174 (312)
T PRK10550 133 HLPVTVKVRLGWDSGER--KFEIADAVQQAGATELVVH--------------------------GRTK----------ED 174 (312)
T ss_pred CcceEEEEECCCCCchH--HHHHHHHHHhcCCCEEEEC--------------------------CCCC----------cc
Confidence 48988863 1221100 2345555555666665543 1121 01
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA-GWGADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSaiv~ 284 (311)
|.+|.. .+ .+.++++|+.+++||+..+||.|++++.+++ ..|+|||-||-+++.
T Consensus 175 ---------~y~g~~--~~---~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 175 ---------GYRAEH--IN---WQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred ---------CCCCCc--cc---HHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 122210 11 2679999999999999999999999999988 578999999977664
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-05 Score=78.62 Aligned_cols=192 Identities=19% Similarity=0.254 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc----------------C-CCCCCC-----CC
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG----------------V-PYSDPL-----AD 106 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG----------------~-PfsDP~-----aD 106 (311)
.+++.-+. ...+...|-.|+ ..|.+.+.+.++..+++|+..|-+- + |+..+. .+
T Consensus 127 slEeIa~~-~~~~~~wfQlY~---~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~ 202 (383)
T cd03332 127 SIEDVAAA-AGDAPRWFQLYW---PKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFS 202 (383)
T ss_pred CHHHHHhh-cCCCCcEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhc
Confidence 45655432 223456677787 6788899999999999999999883 2 321000 00
Q ss_pred hHHHH------------------HHHHHHH----HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHH
Q 021527 107 GPVIQ------------------AAATRSL----ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVR 164 (311)
Q Consensus 107 Gp~Iq------------------~a~~~Al----~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~ 164 (311)
.|... ....... ....++ +.++++++.+++|+++-+-.+ .+.+..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW----~~i~~lr~~~~~pvivKgV~~-------~~dA~~a~ 271 (383)
T cd03332 203 DPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTW----EDLAFLREWTDLPIVLKGILH-------PDDARRAV 271 (383)
T ss_pred cchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCH----HHHHHHHHhcCCCEEEecCCC-------HHHHHHHH
Confidence 00000 0000000 111233 567778888889998875322 45677888
Q ss_pred HcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHH
Q 021527 165 DIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLRE 244 (311)
Q Consensus 165 ~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~ 244 (311)
+.|+||+++..-. | |. . + + . ++ ..+.|.+
T Consensus 272 ~~G~d~I~vsnhG--------------G--------------r~--~----d---------~------~-~~-t~~~L~e 300 (383)
T cd03332 272 EAGVDGVVVSNHG--------------G--------------RQ--V----D---------G------S-IA-ALDALPE 300 (383)
T ss_pred HCCCCEEEEcCCC--------------C--------------cC--C----C---------C------C-cC-HHHHHHH
Confidence 8899998876321 1 00 0 0 0 0 11 1244666
Q ss_pred HhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhH-HHHHHHHHHHHHh
Q 021527 245 IKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKELEKFAKSLKS 308 (311)
Q Consensus 245 vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~-~~~~~~~~~~l~~ 308 (311)
+++.+ ++||++.+||++..|+.+.+..|||+|-+|..+...+... .+++ .+.++.+..+|+.
T Consensus 301 i~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~--G~~gv~~~l~~l~~El~~ 365 (383)
T cd03332 301 IVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALG--GEDGVEHVLRNLLAELDL 365 (383)
T ss_pred HHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhc--cHHHHHHHHHHHHHHHHH
Confidence 65544 5899999999999999999999999999999999887532 1233 2334444455543
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-05 Score=77.55 Aligned_cols=173 Identities=15% Similarity=0.237 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCC------------CCCCCC-ChHHHHH-
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVP------------YSDPLA-DGPVIQA- 112 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~P------------fsDP~a-DGp~Iq~- 112 (311)
.+++.-+. ..+...|-.|+ .+|.+.+.+.++..+++|+..|-+ +.| |+-|.. ....+..
T Consensus 112 slEeva~~--~~~~~wfQlY~---~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~ 186 (367)
T PLN02493 112 SVEEVAST--GPGIRFFQLYV---YKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGL 186 (367)
T ss_pred CHHHHHhc--CCCCcEEEEee---cCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhc
Confidence 35554332 23456788898 778899999999999999999888 222 222211 0000100
Q ss_pred ---------------HHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC
Q 021527 113 ---------------AATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP 177 (311)
Q Consensus 113 ---------------a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp 177 (311)
.....+....++ +.++.+|+.+++||++-+-. ..+..+.+.++|+||+++..-.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~tW----~di~wlr~~~~~PiivKgV~-------~~~dA~~a~~~Gvd~I~VsnhG 255 (367)
T PLN02493 187 DLGKMDEANDSGLASYVAGQIDRTLSW----KDVQWLQTITKLPILVKGVL-------TGEDARIAIQAGAAGIIVSNHG 255 (367)
T ss_pred cccCCCcccchhHHHHHhhcCCCCCCH----HHHHHHHhccCCCEEeecCC-------CHHHHHHHHHcCCCEEEECCCC
Confidence 000001112344 46778888899999997642 2467778999999999886431
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEE
Q 021527 178 LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAV 255 (311)
Q Consensus 178 ~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v 255 (311)
| ... + ..++ ..+.|.++++.. ++||++
T Consensus 256 --------------G-rql-------------------d----------------~~~~-t~~~L~ei~~av~~~~~vi~ 284 (367)
T PLN02493 256 --------------A-RQL-------------------D----------------YVPA-TISALEEVVKATQGRIPVFL 284 (367)
T ss_pred --------------C-CCC-------------------C----------------Cchh-HHHHHHHHHHHhCCCCeEEE
Confidence 1 000 0 0011 123455554432 589999
Q ss_pred eeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 256 GFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 256 GfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
.+||++..|+.+.+-.|||+|-||..+...+..
T Consensus 285 dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~ 317 (367)
T PLN02493 285 DGGVRRGTDVFKALALGASGIFIGRPVVFSLAA 317 (367)
T ss_pred eCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh
Confidence 999999999999999999999999999987753
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.2e-06 Score=79.16 Aligned_cols=186 Identities=20% Similarity=0.257 Sum_probs=108.9
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCC------------CCCCCCChHHH------HHHHHHHHHcCCC
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVP------------YSDPLADGPVI------QAAATRSLARGTN 123 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~P------------fsDP~aDGp~I------q~a~~~Al~~G~~ 123 (311)
.|-.|+ ..|.+.+.+.++..+++|++.|-+ +.| |+.|.-.++.- ......-....+.
T Consensus 121 w~Qly~---~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 121 FFQLYV---NKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred EEEEee---cCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 355565 457788999999999999999877 444 22232000000 0000000111111
Q ss_pred HHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC
Q 021527 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT 203 (311)
Q Consensus 124 ~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t 203 (311)
.....+.++++++.+++|+++-+- +..+.++.+.++|+|++++..-. |-. + --.+.
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivKgv-------~~~~dA~~a~~~G~d~I~vsnhg--------------G~~-~-d~~~~- 253 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLKGV-------QTVEDAVLAAEYGVDGIVLSNHG--------------GRQ-L-DTAPA- 253 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEcC-------CCHHHHHHHHHcCCCEEEEECCC--------------ccc-C-CCCCC-
Confidence 112346788888888999998742 23567788889999998886421 100 0 00000
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHH-Hhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLRE-IKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~-vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+ .+.+ +.+ +++. -++||++.+||++..|+.+.+..|||+|-||++
T Consensus 254 ~~~------------------------------~L~~-i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~ 302 (344)
T cd02922 254 PIE------------------------------VLLE-IRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRP 302 (344)
T ss_pred HHH------------------------------HHHH-HHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 000 0111 222 1122 258999999999999999999999999999999
Q ss_pred hhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 282 MVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 282 iv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+...+...+ .+.-.+.+..+.++|+.
T Consensus 303 ~l~~l~~~G-~~gv~~~l~~l~~EL~~ 328 (344)
T cd02922 303 FLYALSAYG-EEGVEKAIQILKDEIET 328 (344)
T ss_pred HHHHHhhcc-HHHHHHHHHHHHHHHHH
Confidence 999886422 22223344455555554
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.9e-06 Score=75.80 Aligned_cols=197 Identities=20% Similarity=0.269 Sum_probs=139.0
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEE-cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIEL-GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IEl-G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
+-.+||| ++.++.+.+.|+|-+-+ ++--| .+| - +-.+++++++.+++.+|+-+-+
T Consensus 26 lrd~GDp-----VelA~~Y~e~GADElvFlDItAs---~~g--------------r--~~~~~vv~r~A~~vfiPltVGG 81 (256)
T COG0107 26 LRDAGDP-----VELAKRYNEEGADELVFLDITAS---SEG--------------R--ETMLDVVERVAEQVFIPLTVGG 81 (256)
T ss_pred hhhcCCh-----HHHHHHHHHcCCCeEEEEecccc---ccc--------------c--hhHHHHHHHHHhhceeeeEecC
Confidence 4478999 99999999999997655 32221 122 1 1236799999999999998865
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-eC---------------------C--C
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-TT---------------------P--T 202 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-is---------------------p--~ 202 (311)
-.+. -+.++.+..+|+|-+-+....++..+-..+.++++|-..|.. +. + -
T Consensus 82 GI~s------~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~ 155 (256)
T COG0107 82 GIRS------VEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGL 155 (256)
T ss_pred CcCC------HHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCc
Confidence 3221 245677889999999887655555555667777888755432 11 1 1
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSa 281 (311)
...+..++..+...|=|.+-|. .--|.+.+.+- ++++.+++.+++||++.+|..+++|..+++..| ||++...|-
T Consensus 156 d~~~Wa~~~e~~GAGEIlLtsm-D~DGtk~GyDl---~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsi 231 (256)
T COG0107 156 DAVEWAKEVEELGAGEILLTSM-DRDGTKAGYDL---ELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASI 231 (256)
T ss_pred CHHHHHHHHHHcCCceEEEeee-cccccccCcCH---HHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhh
Confidence 1236667777777776666433 24566666653 678899999999999999999999999999877 999998888
Q ss_pred hhchhhhcCCchhHHHHHHHHHHH
Q 021527 282 MVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 282 iv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
|.... -.+.++++|+++
T Consensus 232 FH~~~-------~~i~evK~yL~~ 248 (256)
T COG0107 232 FHFGE-------ITIGEVKEYLAE 248 (256)
T ss_pred hhcCc-------ccHHHHHHHHHH
Confidence 87643 235667777653
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-05 Score=77.34 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=98.6
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCC--CEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ 137 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~Ga--D~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~ 137 (311)
.+...|+.-+..|.. ....+.+..|.++|+ |+|.++ .++|. .+...+++++||++
T Consensus 81 ~~~~~l~v~~~vg~~--~~~~~~~~~Lv~ag~~~d~i~iD------~a~gh---------------~~~~~e~I~~ir~~ 137 (326)
T PRK05458 81 MHEQGLIASISVGVK--DDEYDFVDQLAAEGLTPEYITID------IAHGH---------------SDSVINMIQHIKKH 137 (326)
T ss_pred ccccccEEEEEecCC--HHHHHHHHHHHhcCCCCCEEEEE------CCCCc---------------hHHHHHHHHHHHhh
Confidence 333455666666642 345688888899955 999997 33331 12345678899887
Q ss_pred CC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 138 MS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 138 ~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
+. +||+.-.- +..+.+..+.++|+|++.+.--+ ..+ .++ +.
T Consensus 138 ~p~~~vi~g~V-------~t~e~a~~l~~aGad~i~vg~~~----------------G~~----~~t---~~-------- 179 (326)
T PRK05458 138 LPETFVIAGNV-------GTPEAVRELENAGADATKVGIGP----------------GKV----CIT---KI-------- 179 (326)
T ss_pred CCCCeEEEEec-------CCHHHHHHHHHcCcCEEEECCCC----------------Ccc----ccc---cc--------
Confidence 64 77666311 23456777888999997665222 000 011 00
Q ss_pred ceEEEEecCCccCCCCCCC-chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 217 GFVYLVSSIGVTGARASIS-GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.+|.. .+ .. ...+.++++..++||++.+||+++.|+.+.+..|||+|.+|++|....+
T Consensus 180 ----------~~g~~--~~~w~-l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~e 238 (326)
T PRK05458 180 ----------KTGFG--TGGWQ-LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEE 238 (326)
T ss_pred ----------ccCCC--CCccH-HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCcc
Confidence 00100 11 11 2346666666789999999999999999999999999999999995443
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.7e-06 Score=76.19 Aligned_cols=183 Identities=15% Similarity=0.109 Sum_probs=113.2
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC----
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY---- 148 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~---- 148 (311)
.+.++..++++.|++.|+|.||+|.|.. .+ .+.+. .+.+. ++.++++++. .+.++..+.-.
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~---~~------~~~~~--~~~~~---~e~i~~~~~~~~~~~l~~~~r~~~~~ 83 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGAT---FD------VCMRF--LNEDP---WERLRELRKAMPNTPLQMLLRGQNLV 83 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcc---hh------hhccc--cCCCH---HHHHHHHHHhCCCCceehhccccccc
Confidence 3457788999999999999999997642 00 00010 11222 3445555432 35566554321
Q ss_pred --cchhccCHHHHHHHHHHcCCcEEEecCC--ChhhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHHh----CC
Q 021527 149 --NPILKRGVDNFMSTVRDIGIRGLVVPDV--PLEETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVEA----SE 216 (311)
Q Consensus 149 --n~i~~~g~~~fi~~~~~aGadGviipDl--p~ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~~----a~ 216 (311)
++.-.-..+.+++.+.++|++.+-+-+- .++...+..+.++++|+...+.+ ++.++++...++++. .-
T Consensus 84 ~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga 163 (275)
T cd07937 84 GYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGA 163 (275)
T ss_pred CccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 1111112578999999999998777532 23567778888999998766533 244445554444332 33
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.-+|+....| . ..|..+.++++.+|+..++|+-+ .+|... .+....+++||+.|
T Consensus 164 ~~i~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~-aN~laA~~aGa~~v 221 (275)
T cd07937 164 DSICIKDMAG---L--LTPYAAYELVKALKKEVGLPIHLHTHDTSGLAV-ATYLAAAEAGVDIV 221 (275)
T ss_pred CEEEEcCCCC---C--CCHHHHHHHHHHHHHhCCCeEEEEecCCCChHH-HHHHHHHHhCCCEE
Confidence 3466665444 3 34778899999999987777766 456654 44555667899876
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=8e-05 Score=70.57 Aligned_cols=210 Identities=14% Similarity=0.108 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..+++ +-++..|=+ .+++.+.-++++.++.++.+|---.|-.-.+ ...+.+.
T Consensus 5 ~~~~~l~~A~~~-~yaV~Afn~---~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~-----------------~~~~~~~ 63 (286)
T PRK06801 5 SLANGLAHARKH-GYALGAFNV---LDSHFLRALFAAAKQERSPFIINIAEVHFKY-----------------ISLESLV 63 (286)
T ss_pred cHHHHHHHHHHC-CceEEEEee---CCHHHHHHHHHHHHHHCCCEEEEeCcchhhc-----------------CCHHHHH
Confidence 356777766544 345555543 3789999999999999998865432221111 2345566
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE---Ee
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL---FT 199 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~---li 199 (311)
.+++.+.++.++||.+.. + +.-..+.++.+.+.|++.|.+ .++|+|| ..++.+.++.+|+.+=. .+
T Consensus 64 ~~~~~~a~~~~vpV~lHl--D---H~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~v 138 (286)
T PRK06801 64 EAVKFEAARHDIPVVLNL--D---HGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAV 138 (286)
T ss_pred HHHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcc
Confidence 788888888999999853 2 222346889999999999998 5788776 56788889999986310 01
Q ss_pred --------------CCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC-CchHHHHHHHHhhcCCCcEEEee--CCCCH
Q 021527 200 --------------TPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI-SGHVQTLLREIKESSTKPVAVGF--GISKP 262 (311)
Q Consensus 200 --------------sp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~-~~~~~~~l~~vk~~~~~Pv~vGf--GIst~ 262 (311)
+-.|.++...+..+ ..|..|+--..|.|.....- +.--.+.++++++.+++|++.=+ ||+ .
T Consensus 139 gg~e~~v~~~~~~~~~~T~pe~a~~f~~-~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~ 216 (286)
T PRK06801 139 GGDEGGALYGEADSAKFTDPQLARDFVD-RTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-D 216 (286)
T ss_pred cCCCCCcccCCcccccCCCHHHHHHHHH-HHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-H
Confidence 01233344444443 24666773355655443222 22234679999888899986644 486 7
Q ss_pred HHHHHHHHcCCcEEEEhhHhhchh
Q 021527 263 EHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|+++++.+.|++.|=|+|.+....
T Consensus 217 e~~~~~i~~Gi~KINv~T~~~~a~ 240 (286)
T PRK06801 217 ADFRRAIELGIHKINFYTGMSQAA 240 (286)
T ss_pred HHHHHHHHcCCcEEEehhHHHHHH
Confidence 999999999999999999997654
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.5e-06 Score=80.37 Aligned_cols=163 Identities=20% Similarity=0.227 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCHH----HHHHHHHHhhccC--CCcEEEEe
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNFN----AILSMLKEVVPQM--SCPIALFT 146 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~~----~~~~~i~~ir~~~--~iPiilm~ 146 (311)
.+.+.++.+.++|+|.|||-. +.|-.+.+- +.|--+.|-+++ -++++++++|+.+ ++||.+-.
T Consensus 142 ~~~~aA~~a~~aGfDgveih~------~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHG------AHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcc------hhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 578889999999999999942 111111110 111122333332 3467888888876 66777743
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
..+... -+| +..++..++.+.+.+.|++.+-+...... +.. . .. +
T Consensus 216 s~~~~~---------------~~g-----~~~~e~~~la~~l~~~G~d~i~vs~g~~~-~~~---------~-~~----~ 260 (327)
T cd02803 216 SADDFV---------------PGG-----LTLEEAIEIAKALEEAGVDALHVSGGSYE-SPP---------P-II----P 260 (327)
T ss_pred chhccC---------------CCC-----CCHHHHHHHHHHHHHcCCCEEEeCCCCCc-ccc---------c-cc----C
Confidence 111000 011 34466667777777777776655432210 000 0 00 0
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
++. .......+.++++|+.+++||++++||++++++.++++. |||.|-+|++++.
T Consensus 261 -~~~--~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 261 -PPY--VPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred -CCC--CCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 000 001223467888999899999999999999999999998 7999999999886
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=78.36 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCC
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIE 194 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~ 194 (311)
+.+.+.++++++|+.. +.+..-.++. ...++++.+.++|+|.|.+..= .-.+-..+.+.+++.++.
T Consensus 117 ~p~l~~~ii~~vr~a~---VtvkiRl~~~---~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IP 190 (369)
T TIGR01304 117 KPELLGERIAEVRDSG---VITAVRVSPQ---NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVP 190 (369)
T ss_pred ChHHHHHHHHHHHhcc---eEEEEecCCc---CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCC
Confidence 3445567888888753 3333333432 4578999999999999987510 111233456666777876
Q ss_pred eEEEeCCCChHHHHHHHHHhCCceEEEE-ecCC-ccCCC-CCCCchHHHHHHHHhh-------cC---CCcEEEeeCCCC
Q 021527 195 LVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIG-VTGAR-ASISGHVQTLLREIKE-------SS---TKPVAVGFGISK 261 (311)
Q Consensus 195 ~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G-~TG~~-~~~~~~~~~~l~~vk~-------~~---~~Pv~vGfGIst 261 (311)
+|. -.-.+. +...+..+ .|...++ ...| .|+.. .+........+.++.+ .+ .+||++.+||++
T Consensus 191 VI~-G~V~t~-e~A~~~~~--aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t 266 (369)
T TIGR01304 191 VIA-GGVNDY-TTALHLMR--TGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIET 266 (369)
T ss_pred EEE-eCCCCH-HHHHHHHH--cCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 553 123343 43444434 3444333 2111 11110 0111112222333221 22 389999999999
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
..++.+.+..|||+|.+||+|....+.
T Consensus 267 g~di~kAlAlGAdaV~iGt~~a~a~Ea 293 (369)
T TIGR01304 267 SGDLVKAIACGADAVVLGSPLARAAEA 293 (369)
T ss_pred HHHHHHHHHcCCCEeeeHHHHHhhhcC
Confidence 999999999999999999999998764
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-05 Score=73.35 Aligned_cols=166 Identities=16% Similarity=0.189 Sum_probs=106.1
Q ss_pred ChhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 46 PTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 46 ~m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
+..++++.+.+++..+ ..+++=+...+| +.+.+.++.+.+. +|+|||..--..|- +...-.-.+| ..+.+
T Consensus 57 ~~~~~~~~~~~~~~~~-~p~~vqi~g~~~--~~~~~aa~~~~~~-~~~ielN~gCP~~~----v~~~g~G~~L--l~~p~ 126 (233)
T cd02911 57 PLEFIEGEIKALKDSN-VLVGVNVRSSSL--EPLLNAAALVAKN-AAILEINAHCRQPE----MVEAGAGEAL--LKDPE 126 (233)
T ss_pred hHHHHHHHHHHhhccC-CeEEEEecCCCH--HHHHHHHHHHhhc-CCEEEEECCCCcHH----HhcCCcchHH--cCCHH
Confidence 4567888777776554 356655555555 7888999998875 69999964433220 1000000011 13567
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
.+.++++.+|+ .++||.+-.-.+.- ....++++.+.++|+|++++-..
T Consensus 127 ~l~eiv~avr~-~~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~~~----------------------------- 174 (233)
T cd02911 127 RLSEFIKALKE-TGVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVDAM----------------------------- 174 (233)
T ss_pred HHHHHHHHHHh-cCCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEECcC-----------------------------
Confidence 77888999987 68998886422200 12345666666677776533110
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..|. ..+ .+.+++++ +++||+..+||.+++++.+++..|||+|-||.+
T Consensus 175 ---------------------~~g~--~ad---~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 175 ---------------------DPGN--HAD---LKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred ---------------------CCCC--CCc---HHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 0010 011 24577776 689999999999999999999999999999998
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.8e-05 Score=67.47 Aligned_cols=192 Identities=22% Similarity=0.313 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
+.+++.|.. |++| =+..|--|+ +....++++.+.+|++.+-+- +|.
T Consensus 3 ~~l~~~~~~-----~~al--KVIsGLnNFd~~~V~~i~~AA~~ggAt~vDIA-------adp------------------ 50 (242)
T PF04481_consen 3 SKLQQAFAQ-----RRAL--KVISGLNNFDAESVAAIVKAAEIGGATFVDIA-------ADP------------------ 50 (242)
T ss_pred hHHHHHHHh-----Ccch--hheeCccccCHHHHHHHHHHHHccCCceEEec-------CCH------------------
Confidence 367777875 5555 234566555 678999999999999999994 332
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC----------hhhHHHHHHHHHHcCCCe
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP----------LEETESLQKEAMKNKIEL 195 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp----------~ee~~~~~~~~~~~gi~~ 195 (311)
++++.+++..++||.+-+ -.++.|.. |.++|+|-+=+.+.. .||..++.++.|+. +..
T Consensus 51 ---~LV~~~~~~s~lPICVSa-------Vep~~f~~-aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~L-LP~ 118 (242)
T PF04481_consen 51 ---ELVKLAKSLSNLPICVSA-------VEPELFVA-AVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSL-LPD 118 (242)
T ss_pred ---HHHHHHHHhCCCCeEeec-------CCHHHHHH-HHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHh-CCC
Confidence 466677777899998843 23456665 778899988776432 24555555555553 222
Q ss_pred EEE--eCCCC-hHHHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHH----------HHHhhcCCCcEEEeeCCC
Q 021527 196 VLF--TTPTT-PTDRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLL----------REIKESSTKPVAVGFGIS 260 (311)
Q Consensus 196 I~l--isp~t-~~eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l----------~~vk~~~~~Pv~vGfGIs 260 (311)
+++ .-|.+ +-+....++.. ..|..++.+- |.|-++ ...+.+..++ ..+.+.+++||++..|++
T Consensus 119 ~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTE-Ggtss~-p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS 196 (242)
T PF04481_consen 119 ITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTE-GGTSSK-PTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLS 196 (242)
T ss_pred CceEEecCccccHHHHHHHHHHHHHhCCcEEEcC-CCCCCC-CCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcc
Confidence 322 22433 22332222221 4577777754 333332 2223333333 345666789999999998
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
. -++--...+||.||=|||++-+.-
T Consensus 197 ~-vT~PmAiaaGAsGVGVGSavn~Ln 221 (242)
T PF04481_consen 197 A-VTAPMAIAAGASGVGVGSAVNRLN 221 (242)
T ss_pred h-hhHHHHHHcCCcccchhHHhhhcc
Confidence 5 678888899999999999997743
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-05 Score=72.94 Aligned_cols=177 Identities=18% Similarity=0.241 Sum_probs=114.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
|.+...+.++.+.+.|||+|-+|...+ | . ...+.+...++.+++.+++|+.+.+|-
T Consensus 23 d~~~i~~~A~~~~~~GAdiIDVg~~~~-~-~----------------eE~~r~~~~v~~l~~~~~~plsIDT~~------ 78 (261)
T PRK07535 23 DAAFIQKLALKQAEAGADYLDVNAGTA-V-E----------------EEPETMEWLVETVQEVVDVPLCIDSPN------ 78 (261)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC-c-h----------------hHHHHHHHHHHHHHHhCCCCEEEeCCC------
Confidence 347788999999999999999996631 1 0 112344567778887789999998863
Q ss_pred CHHHHHHHHHHc--CCcEEEecCCChhh--HHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHHHHh-----CCce--
Q 021527 155 GVDNFMSTVRDI--GIRGLVVPDVPLEE--TESLQKEAMKNKIELVLFTT-----PTTPTDRMKAIVEA-----SEGF-- 218 (311)
Q Consensus 155 g~~~fi~~~~~a--GadGviipDlp~ee--~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i~~~-----a~gf-- 218 (311)
-+.++.+.+. |++ |+.|+..++ ..+..+.++++|...|.+.. |.|.++|++...+. ..|+
T Consensus 79 --~~v~eaaL~~~~G~~--iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~ 154 (261)
T PRK07535 79 --PAAIEAGLKVAKGPP--LINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPP 154 (261)
T ss_pred --HHHHHHHHHhCCCCC--EEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCH
Confidence 2345566665 776 566766543 45677889999998887654 55555554332221 3454
Q ss_pred --EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEe-----eCCCCHHHHHHH-----HHcCCcEEEEh
Q 021527 219 --VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVG-----FGISKPEHVQQV-----AGWGADGVIVG 279 (311)
Q Consensus 219 --iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vG-----fGIst~e~v~~v-----~~~GADGvIVG 279 (311)
+++-+..|.-|..........+.++++|+.. +.|+.+| ||.-...-+..+ .++|.|.+|+=
T Consensus 155 ~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~aI~n 228 (261)
T PRK07535 155 EDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAILD 228 (261)
T ss_pred hHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCEEeeC
Confidence 5665655533332222334456677777765 7999986 777544444333 57889988874
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.2e-05 Score=70.90 Aligned_cols=186 Identities=15% Similarity=0.197 Sum_probs=112.2
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc--cCCCcEEEE-----
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP--QMSCPIALF----- 145 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~--~~~iPiilm----- 145 (311)
+..+++..+.++...+.|+|.+-+. | | +++..++ ..++|+++-
T Consensus 35 ~~~~~d~~~~~~~a~~~~~~av~v~-----~---~----------------------~~~~~~~~~~~~~~l~~~i~~~~ 84 (267)
T PRK07226 35 IDGLVDIRDTVNKVAEGGADAVLMH-----K---G----------------------LARHGHRGYGRDVGLIVHLSAST 84 (267)
T ss_pred CcCcCCHHHHHHHHHhcCCCEEEeC-----H---h----------------------HHhhhccccCCCCcEEEEEcCCC
Confidence 3456788889999999999999984 2 2 2222222 234665552
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEec----CCCh----hhHHHHHHHHHHcCCCeEEEe--------CCCChHHHHH
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVP----DVPL----EETESLQKEAMKNKIELVLFT--------TPTTPTDRMK 209 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviip----Dlp~----ee~~~~~~~~~~~gi~~I~li--------sp~t~~eri~ 209 (311)
+|+..-...-.-..++++.+.|+|.+-+. ++.. ++..++.+.|+++|+.++... +..++ +.+.
T Consensus 85 ~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~-~~i~ 163 (267)
T PRK07226 85 SLSPDPNDKVLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDP-EVVA 163 (267)
T ss_pred CCCCCCCcceeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccH-HHHH
Confidence 22210000111235678999999987764 1211 245667888899999876642 22222 2222
Q ss_pred HHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC--CHHHHHHH----HHcCCcEEEEhhH
Q 021527 210 AIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS--KPEHVQQV----AGWGADGVIVGSA 281 (311)
Q Consensus 210 ~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs--t~e~v~~v----~~~GADGvIVGSa 281 (311)
..++. ..|..|+=+. .+| + .+.++++.+...+||.+-+||+ |.+++.+. +++||+|+.+|++
T Consensus 164 ~a~~~a~e~GAD~vKt~--~~~-------~-~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~ 233 (267)
T PRK07226 164 HAARVAAELGADIVKTN--YTG-------D-PESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRN 233 (267)
T ss_pred HHHHHHHHHCCCEEeeC--CCC-------C-HHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhh
Confidence 22121 2466777332 222 1 2567777776789999999999 76655555 5999999999999
Q ss_pred hhchhhhcCCchhHHHHHHHHH
Q 021527 282 MVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 282 iv~~~~~~~~~~~~~~~~~~~~ 303 (311)
+.+. .++...++++...+
T Consensus 234 i~~~----~~p~~~~~~l~~~v 251 (267)
T PRK07226 234 VFQH----EDPEAITRAISAVV 251 (267)
T ss_pred hhcC----CCHHHHHHHHHHHH
Confidence 9973 23455555555444
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-05 Score=72.10 Aligned_cols=210 Identities=15% Similarity=0.182 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHcCCccEEEEE----eCC-CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 49 GLAETFTRLKKQGKVALIPYI----TAG-DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi----~~G-~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
|++..|.. +.| +.++.-| ..| +++.++..+.++...+.|+|.+-+- | | .+.
T Consensus 6 rl~r~~~~--~~g-~~~~~aiDh~~l~gp~~~~~~~~~~~~~a~~~~~~~v~~~-----p---~-~~~------------ 61 (258)
T TIGR01949 6 RLERIFNR--ESG-RTVIVPMDHGVSNGPIKGLVDIRKTVNEVAEGGADAVLLH-----K---G-IVR------------ 61 (258)
T ss_pred HHHHhccC--CCC-CEEEEECCCccccCCCCCcCCHHHHHHHHHhcCCCEEEeC-----c---c-hhh------------
Confidence 44555531 234 5666655 222 4566788889999999999999984 2 1 011
Q ss_pred HHHHHHHHHHhhccCCCcEEEEe-cCcchhccC----HHHHHHHHHHcCCcEEEecCC--C------hhhHHHHHHHHHH
Q 021527 124 FNAILSMLKEVVPQMSCPIALFT-YYNPILKRG----VDNFMSTVRDIGIRGLVVPDV--P------LEETESLQKEAMK 190 (311)
Q Consensus 124 ~~~~~~~i~~ir~~~~iPiilm~-Y~n~i~~~g----~~~fi~~~~~aGadGviipDl--p------~ee~~~~~~~~~~ 190 (311)
...+. ...++++++-. +..|..... ....++.+.+.|++++-+-+- + +++..++.+.|++
T Consensus 62 ------~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~ 134 (258)
T TIGR01949 62 ------RGHRG-YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDD 134 (258)
T ss_pred ------hcccc-cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHH
Confidence 11111 12355654432 122222111 223578899999998877432 1 1245667788889
Q ss_pred cCCCeEEEeC------CCChHHHHHHHHH--hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC--
Q 021527 191 NKIELVLFTT------PTTPTDRMKAIVE--ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS-- 260 (311)
Q Consensus 191 ~gi~~I~lis------p~t~~eri~~i~~--~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs-- 260 (311)
+|+.++.... +..+.+.+...++ ...|..|+-+.. .+ + .+.++++.+..++||++-+||+
T Consensus 135 ~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~--~~-------~-~~~l~~~~~~~~iPVva~GGi~~~ 204 (258)
T TIGR01949 135 WGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPY--TG-------D-IDSFRDVVKGCPAPVVVAGGPKTN 204 (258)
T ss_pred cCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccC--CC-------C-HHHHHHHHHhCCCcEEEecCCCCC
Confidence 9988766322 2222222222111 135667764321 11 1 3568888777789998889998
Q ss_pred C----HHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 261 K----PEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 261 t----~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
+ .+++.++.+.||+|+.+|+++.+.- ++...++++.+.+
T Consensus 205 ~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~----dp~~~~~~l~~~i 247 (258)
T TIGR01949 205 SDREFLQMIKDAMEAGAAGVAVGRNIFQHD----DPVGITKAVCKIV 247 (258)
T ss_pred CHHHHHHHHHHHHHcCCcEEehhhHhhcCC----CHHHHHHHHHHHH
Confidence 4 6778888899999999999999742 3444444444433
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-05 Score=75.39 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=110.2
Q ss_pred HHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCC--CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 57 LKKQGKVALIPYITAGDPDLSTTAEALKLLDSCG--SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 57 ~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~G--aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
.++.+.+.+...+..|.. +...+.+..|.++| +|.|-++ .+.|.- +.+++.++++
T Consensus 75 vrk~k~~~L~v~~SvG~t--~e~~~r~~~lv~a~~~~d~i~~D------~ahg~s---------------~~~~~~i~~i 131 (321)
T TIGR01306 75 IKDMQERGLFASISVGVK--ACEYEFVTQLAEEALTPEYITID------IAHGHS---------------NSVINMIKHI 131 (321)
T ss_pred HHhccccccEEEEEcCCC--HHHHHHHHHHHhcCCCCCEEEEe------CccCch---------------HHHHHHHHHH
Confidence 344444556777778876 44468888899999 7999997 455521 3567899999
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~ 214 (311)
|+.+..|.++-+ | .+..+.++.+.++|+|++.+.--| ..+ .+| |+
T Consensus 132 ~~~~p~~~vi~G--n----V~t~e~a~~l~~aGad~I~V~~G~----------------G~~----~~t---r~------ 176 (321)
T TIGR01306 132 KTHLPDSFVIAG--N----VGTPEAVRELENAGADATKVGIGP----------------GKV----CIT---KI------ 176 (321)
T ss_pred HHhCCCCEEEEe--c----CCCHHHHHHHHHcCcCEEEECCCC----------------Ccc----ccc---ee------
Confidence 998888877655 2 124678889999999998765222 111 011 11
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
++..|.. .+.+ ..+.++++..++||++.+||++..|+.+.+.+|||+|-+|+.|...-+
T Consensus 177 -------~~g~g~~------~~~l-~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~E 235 (321)
T TIGR01306 177 -------KTGFGTG------GWQL-AALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEE 235 (321)
T ss_pred -------eeccCCC------chHH-HHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCccc
Confidence 0111110 1222 457777777789999999999999999999999999999999976553
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-05 Score=77.60 Aligned_cols=186 Identities=16% Similarity=0.180 Sum_probs=118.2
Q ss_pred CCccEEEEEeCCCCChh------hHHHHHHHHHHCCCCEEEEcCCCCCCC-CChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 61 GKVALIPYITAGDPDLS------TTAEALKLLDSCGSDIIELGVPYSDPL-ADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~------~~~e~~~~L~~~GaD~IElG~PfsDP~-aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
++..+|.=+=--.|... ...++++.+ ++||++|-+= +||- ..| + ++.+++
T Consensus 48 ~~~~vIaEiKraSPs~G~i~~~~d~~~~a~~y-~~gA~aiSVl---Te~~~F~G---------------s----~~~l~~ 104 (454)
T PRK09427 48 PKTAFILECKKASPSKGLIRDDFDPAEIARVY-KHYASAISVL---TDEKYFQG---------------S----FDFLPI 104 (454)
T ss_pred CCCceEEEeecCCCCCCccCCCCCHHHHHHHH-HcCCeEEEEe---cCcCcCCC---------------C----HHHHHH
Confidence 35678877744445431 457888888 8889999984 3332 233 2 357778
Q ss_pred hhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 134 VVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 134 ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
+|+.+++||+--=+ ..- +--+..+...|||.+++. =|+.++..++.+.++..|++.+.=+. + .+.++..
T Consensus 105 vr~~v~~PvLrKDF----iid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh--~-~~El~~a 175 (454)
T PRK09427 105 VRAIVTQPILCKDF----IID--PYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVS--N-EEELERA 175 (454)
T ss_pred HHHhCCCCEEeccc----cCC--HHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEEC--C-HHHHHHH
Confidence 88888999876321 111 223567888999998874 34446788999999999999776543 3 3444444
Q ss_pred HHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 212 VEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+....++ -+-.... ..+..++ +.-.++.... ++.++...||+|++|+..+.. |+|||.||+++++.
T Consensus 176 l~~~a~ii-GiNnRdL----~t~~vd~-~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~ 244 (454)
T PRK09427 176 IALGAKVI-GINNRNL----RDLSIDL-NRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAE 244 (454)
T ss_pred HhCCCCEE-EEeCCCC----ccceECH-HHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCC
Confidence 34332332 2211111 0111121 2233333333 567788999999999999875 69999999999994
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.3e-06 Score=78.97 Aligned_cols=155 Identities=19% Similarity=0.269 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcE
Q 021527 78 TTAEALKLLDSCGSDIIELGV-----------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPI 142 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPi 142 (311)
.+.+.++.+.++|.|.|||-. |.++.--| |-.+.+ +.+-.+++++.||+.+ +.||
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~n----------r~rf~~eiv~aIR~~vG~d~~v 224 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLEN----------RMRFLLEVVDAVRAVWPEDKPL 224 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHH----------HhHHHHHHHHHHHHHcCCCceE
Confidence 578888999999999999953 65555555 322222 2244577888888877 6777
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-. | ..++. + ..+..++..++.+.+.+.|++.+-+.....+.. .. +
T Consensus 225 ~vri--~------~~~~~--------~----~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~---------~~--~-- 271 (336)
T cd02932 225 FVRI--S------ATDWV--------E----GGWDLEDSVELAKALKELGVDLIDVSSGGNSPA---------QK--I-- 271 (336)
T ss_pred EEEE--c------ccccC--------C----CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcc---------cc--c--
Confidence 7632 2 11111 0 112246777777788888887665432111000 00 0
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.. .+....+.++++|+.+++||++++||.+++++.++++.| +|.|-+|.+++.
T Consensus 272 -----~~----~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 272 -----PV----GPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred -----CC----CccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 00 011123678889999999999999999999999999988 999999998886
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.5e-05 Score=75.30 Aligned_cols=192 Identities=18% Similarity=0.186 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc--CC------------CCCCCCChHHHHHH-
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG--VP------------YSDPLADGPVIQAA- 113 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG--~P------------fsDP~aDGp~Iq~a- 113 (311)
.+++.-.. ...+...|..|+ .+|.+.+.+.++..+++|+..|-+- .| |+-|..........
T Consensus 122 slEev~~~-~~~~~~wfQlY~---~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~ 197 (367)
T TIGR02708 122 DLPEISEA-LNGTPHWFQFYM---SKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLP 197 (367)
T ss_pred CHHHHHhh-cCCCceEEEEec---cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcc
Confidence 45555432 112355777787 7788899999999999999999883 22 33332111000000
Q ss_pred --------H-HHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHH
Q 021527 114 --------A-TRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 184 (311)
Q Consensus 114 --------~-~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~ 184 (311)
. ........++ +.++++++.+++||++-+- +..+.++.+.++|+|++++..-.-
T Consensus 198 ~~~~~~~~~~~~~~~~~~~w----~~i~~l~~~~~~PvivKGv-------~~~eda~~a~~~Gvd~I~VS~HGG------ 260 (367)
T TIGR02708 198 TGAGKSMDNVYKSAKQKLSP----RDIEEIAGYSGLPVYVKGP-------QCPEDADRALKAGASGIWVTNHGG------ 260 (367)
T ss_pred cCCccchhhhccccCCCCCH----HHHHHHHHhcCCCEEEeCC-------CCHHHHHHHHHcCcCEEEECCcCc------
Confidence 0 0000111333 4678888888999999752 225677788889999887763220
Q ss_pred HHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCH
Q 021527 185 QKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKP 262 (311)
Q Consensus 185 ~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~ 262 (311)
+ .++ + .+.. .+.|.++++.. ++||++.+||++.
T Consensus 261 ----r--q~~----------------------------------~----~~a~-~~~L~ei~~av~~~i~vi~dGGIr~g 295 (367)
T TIGR02708 261 ----R--QLD----------------------------------G----GPAA-FDSLQEVAEAVDKRVPIVFDSGVRRG 295 (367)
T ss_pred ----c--CCC----------------------------------C----CCcH-HHHHHHHHHHhCCCCcEEeeCCcCCH
Confidence 0 000 0 0111 23455555543 4899999999999
Q ss_pred HHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHH-HHHHHHHHHHHh
Q 021527 263 EHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL-KELEKFAKSLKS 308 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~-~~~~~~~~~l~~ 308 (311)
.|+.+.+..|||+|-||-.+...+... .++++ ..++.+..+|+.
T Consensus 296 ~Dv~KaLalGAd~V~igR~~l~~la~~--G~~gv~~~l~~l~~El~~ 340 (367)
T TIGR02708 296 QHVFKALASGADLVALGRPVIYGLALG--GSQGARQVFEYLNKELKR 340 (367)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987532 12333 334455555554
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.9e-06 Score=83.79 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~ 156 (311)
...+.++.|.++|+|+|++.. ++| .+. ..++.++++|+.+ ++||+.- | + ..
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~------a~G--------------~s~-~~~~~i~~ik~~~~~~~v~aG---~-V---~t 292 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDS------SQG--------------NSI-YQIDMIKKLKSNYPHVDIIAG---N-V---VT 292 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEec------CCC--------------Cch-HHHHHHHHHHhhCCCceEEEC---C-c---CC
Confidence 347999999999999999973 233 222 2356888888874 6777762 2 1 12
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+-++.+.++|+|++.+. +.+ | -+ .+|. + ++|. +.|.
T Consensus 293 ~~~a~~~~~aGad~I~vg-~g~-------------G--s~----~~t~---~------------------~~~~--g~p~ 329 (495)
T PTZ00314 293 ADQAKNLIDAGADGLRIG-MGS-------------G--SI----CITQ---E------------------VCAV--GRPQ 329 (495)
T ss_pred HHHHHHHHHcCCCEEEEC-CcC-------------C--cc----cccc---h------------------hccC--CCCh
Confidence 457788899999998653 110 1 00 0111 0 0110 1111
Q ss_pred -hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 237 -HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 237 -~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.....+.++.+..++|+++.+||.++.++.+.+.+|||+|.+||.|...-+
T Consensus 330 ~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 330 ASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEE 381 (495)
T ss_pred HHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccc
Confidence 111224444444579999999999999999999999999999999988553
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-05 Score=72.43 Aligned_cols=173 Identities=20% Similarity=0.311 Sum_probs=107.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcch
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPI 151 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i 151 (311)
+...+...++++.|.++|+|.||+|+|+..| .+ .+.++++++. .+.++..++..+..
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~---~~-------------------~~~v~~~~~~~~~~~~~~~~~~~~~ 67 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFPFASE---DD-------------------FEQVRRLREALPNARLQALCRANEE 67 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHCTSSH---HH-------------------HHHHHHHHHHHHSSEEEEEEESCHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEcccccCH---HH-------------------HHHhhhhhhhhcccccceeeeehHH
Confidence 4556889999999999999999999888654 11 1233333321 22566666665422
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCC----------------hhhHHHHHHHHHHcCCCeEEEeCC--CChHHHHHHHHH
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVP----------------LEETESLQKEAMKNKIELVLFTTP--TTPTDRMKAIVE 213 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp----------------~ee~~~~~~~~~~~gi~~I~lisp--~t~~eri~~i~~ 213 (311)
.+++.++.++++|++.+-+.+-- .+...+..+.+++.|++..+.... .++.+.+.++.+
T Consensus 68 ---~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 68 ---DIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp ---HHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred ---HHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 13445566677999988875422 235667788899999987554421 223344333333
Q ss_pred ----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 214 ----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 214 ----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.....+|+....|. ..|..+.++++.+|+..+ +|+-+ .+|-. ..+.-..+++|||-|
T Consensus 145 ~~~~~g~~~i~l~Dt~G~-----~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla-~An~laA~~aGa~~i 210 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGI-----MTPEDVAELVRALREALPDIPLGFHAHNDLGLA-VANALAALEAGADRI 210 (237)
T ss_dssp HHHHHT-SEEEEEETTS------S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-H-HHHHHHHHHTT-SEE
T ss_pred HHHHcCCeEEEeeCccCC-----cCHHHHHHHHHHHHHhccCCeEEEEecCCccch-hHHHHHHHHcCCCEE
Confidence 34456788776553 346778999999999875 66655 23333 245666778999996
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-05 Score=73.22 Aligned_cols=182 Identities=18% Similarity=0.271 Sum_probs=107.8
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchh
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPIL 152 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~ 152 (311)
-+.+...++++.|.+.|+|.||+|+| +.. .|... ..+....+-.+.++.+++. .+.++..|.- +
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~-~~~--~~~~~--------~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~--~-- 83 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHG-DGL--GGSSL--------NYGFAAHTDEEYLEAAAEALKQAKLGVLLL--P-- 83 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecC-CCC--CCccc--------ccCCCCCChHHHHHHHHHhccCCEEEEEec--C--
Confidence 44578899999999999999999976 211 00000 0000000112345555432 3456666531 0
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh----CCceEEEEec
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA----SEGFVYLVSS 224 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~----a~gfiY~vs~ 224 (311)
..+-.++++.+.++|+|.+-+.+-. .++..+..+.+++.|+.....+ +...+++.+.++++. ....+|+...
T Consensus 84 ~~~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT 163 (263)
T cd07943 84 GIGTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDS 163 (263)
T ss_pred CccCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1122478899999999987765322 2356778888899998765544 223344544443333 3345677654
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcCCC-cEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 225 IGVTGARASISGHVQTLLREIKESSTK-PVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~~~-Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.| . ..|..+.++++.+|+..+. |+-+ .+|... .+.....++|||.|
T Consensus 164 ~G---~--~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~-AN~laAi~aGa~~v 214 (263)
T cd07943 164 AG---A--MLPDDVRERVRALREALDPTPVGFHGHNNLGLAV-ANSLAAVEAGATRI 214 (263)
T ss_pred CC---C--cCHHHHHHHHHHHHHhCCCceEEEEecCCcchHH-HHHHHHHHhCCCEE
Confidence 44 3 3577889999999998765 5543 233332 34556667899865
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-05 Score=75.77 Aligned_cols=166 Identities=18% Similarity=0.327 Sum_probs=106.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~ 154 (311)
.++-+++++.|++.|+|.||+|+|.+.| . -++.++.+.+. .+..+..++-
T Consensus 21 ~~~k~~ia~~L~~~Gv~~IEvG~p~~~~---~-------------------~~e~i~~i~~~~~~~~v~~~~r------- 71 (363)
T TIGR02090 21 VEQKVEIARKLDELGVDVIEAGFPIASE---G-------------------EFEAIKKISQEGLNAEICSLAR------- 71 (363)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCh---H-------------------HHHHHHHHHhcCCCcEEEEEcc-------
Confidence 4678899999999999999999987643 1 13455565543 3444554432
Q ss_pred CHHHHHHHHHHcCCcEEEecC----C--------C----hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh--
Q 021527 155 GVDNFMSTVRDIGIRGLVVPD----V--------P----LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA-- 214 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipD----l--------p----~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~-- 214 (311)
...+.++.+.++|++.+.+.. . . .+...+..+.++++|+++.+.. +..++.+.+.++++.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~ 151 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAE 151 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHH
Confidence 236779999999999887732 1 1 1335567788899998754432 233445665555443
Q ss_pred --CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 --SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 --a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...-+|+.... |. ..|..+.++++.+++..++|+-+ .+|... .+....+++|||.|
T Consensus 152 ~~g~~~i~l~DT~---G~--~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~-AN~laA~~aGa~~v 213 (363)
T TIGR02090 152 EAGADRINIADTV---GV--LTPQKMEELIKKLKENVKLPISVHCHNDFGLAT-ANSIAGVKAGAEQV 213 (363)
T ss_pred hCCCCEEEEeCCC---Cc--cCHHHHHHHHHHHhcccCceEEEEecCCCChHH-HHHHHHHHCCCCEE
Confidence 22345665543 43 35778899999999877666544 344443 34556667898765
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-05 Score=72.35 Aligned_cols=215 Identities=21% Similarity=0.346 Sum_probs=112.4
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH----HcCCCHHHHHHHHHHhhccC-CCcE
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL----ARGTNFNAILSMLKEVVPQM-SCPI 142 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al----~~G~~~~~~~~~i~~ir~~~-~iPi 142 (311)
-.-+|.. -.++..+++|+|.|-+ |..|.+=+ +-.-+| ..|-.-+-++++.++|-+.+ ++||
T Consensus 19 g~gaGtG------lsAk~ae~gGaDlI~~-------ynsGrfR~-~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPV 84 (268)
T PF09370_consen 19 GAGAGTG------LSAKCAEKGGADLILI-------YNSGRFRM-AGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPV 84 (268)
T ss_dssp EEEESSH------HHHHHHHHTT-SEEEE--------HHHHHHH-TT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-E
T ss_pred EEeeccc------hhhHHHHhcCCCEEEE-------ecchhHhh-CCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCE
Confidence 3455654 6778889999999998 22232211 000000 11111234567778887764 4998
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEe-cC----------------CChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVV-PD----------------VPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGvii-pD----------------lp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
+.-...++-+ ...++|++.+++.|..||.. |. +.++.-.++...+++.|+-.+.++- + +
T Consensus 85 iaGv~atDP~-~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf--~-~ 160 (268)
T PF09370_consen 85 IAGVCATDPF-RDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVF--N-E 160 (268)
T ss_dssp EEEE-TT-TT---HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE---S-H
T ss_pred EEEecCcCCC-CcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeec--C-H
Confidence 8876555444 35789999999999999876 32 1222234567788888886666664 2 3
Q ss_pred HHHHHHHHhCCceEEE-E--ecCCccCCCCCCC-chHHHHHHHHhh----cC-C-CcEEEeeCCCCHHHHHHHHHc--CC
Q 021527 206 DRMKAIVEASEGFVYL-V--SSIGVTGARASIS-GHVQTLLREIKE----SS-T-KPVAVGFGISKPEHVQQVAGW--GA 273 (311)
Q Consensus 206 eri~~i~~~a~gfiY~-v--s~~G~TG~~~~~~-~~~~~~l~~vk~----~~-~-~Pv~vGfGIst~e~v~~v~~~--GA 273 (311)
+..+.+++.....+.+ + +.-|..|.++..+ .+..+.++++.+ .. + +-++-|+-|++|+|++.+++. |+
T Consensus 161 e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~ 240 (268)
T PF09370_consen 161 EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGI 240 (268)
T ss_dssp HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTE
T ss_pred HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCC
Confidence 4455565543333222 1 2223334433222 112233333333 22 2 346679999999999999865 46
Q ss_pred cEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 274 DGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 274 DGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
||++-||++.|.--| +.+.+.++++|.
T Consensus 241 ~Gf~G~Ss~ERlP~E--------~ai~~~~~~FK~ 267 (268)
T PF09370_consen 241 HGFIGASSMERLPVE--------RAITETVRAFKS 267 (268)
T ss_dssp EEEEESTTTTHHHHH--------HHHHHHHHHHHT
T ss_pred CEEecccchhhccHH--------HHHHHHHHHhhc
Confidence 999999999986533 355666666653
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-05 Score=75.68 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC-----ccC
Q 021527 157 DNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG-----VTG 229 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G-----~TG 229 (311)
.+.++.+.++|++.+.+. .-..+...++.+.+++.+-+....+....+.+..+...+ .|..+++...| .|.
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~vg~g~G~~~~t~ 173 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID--AGADGVKVGIGPGSICTTR 173 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh--cCCCEEEECCCCCcCcccc
Confidence 456778899999987652 112244556667777765222222222233455555544 34444431111 111
Q ss_pred CCCCCCchHHHHHHHHhhc---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 230 ARASISGHVQTLLREIKES---STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
...+........+.++.+. .++||+..+||.++.++.+.+..|||+|.+||.|....+.
T Consensus 174 ~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 174 IVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDES 235 (325)
T ss_pred eeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccC
Confidence 1111111222344444443 3699999999999999999999999999999999987653
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.3e-06 Score=81.41 Aligned_cols=140 Identities=23% Similarity=0.235 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~ 156 (311)
...+-++.|.++|+|+|++. .++|. -....+.++++|++ .++||++-.-. .
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd------~a~g~---------------~~~~~~~i~~i~~~~~~~~vi~G~v~-------t 275 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVID------SSHGH---------------SIYVIDSIKEIKKTYPDLDIIAGNVA-------T 275 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEE------CCCCc---------------HhHHHHHHHHHHHhCCCCCEEEEeCC-------C
Confidence 56788899999999999997 33341 12456789999987 58998883221 1
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+-++.+.++|+|++.+.=-| | -+ .+| |. ++|. +.|.
T Consensus 276 ~~~a~~l~~aGad~i~vg~g~--------------G--~~----~~t---~~------------------~~~~--g~p~ 312 (450)
T TIGR01302 276 AEQAKALIDAGADGLRVGIGP--------------G--SI----CTT---RI------------------VAGV--GVPQ 312 (450)
T ss_pred HHHHHHHHHhCCCEEEECCCC--------------C--cC----Ccc---ce------------------ecCC--CccH
Confidence 455677888999998653111 0 00 011 00 1111 1110
Q ss_pred -hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 237 -HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 237 -~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
.....+.++.+..++||++.+||+++.++.+.+.+|||.|.+||.|....+.
T Consensus 313 ~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~ 365 (450)
T TIGR01302 313 ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTES 365 (450)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcC
Confidence 1111233323335799999999999999999999999999999999987653
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-05 Score=77.03 Aligned_cols=170 Identities=16% Similarity=0.202 Sum_probs=107.0
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc--CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG--VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM 138 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG--~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~ 138 (311)
....++.=|...+| +.+.+.++.+++.|+|.|+|. =|...=.-+| +--+|- .+.+.+.++++.+++.+
T Consensus 53 ~e~p~~vQl~g~~p--~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g------~Gs~Ll--~~p~~~~~iv~av~~~~ 122 (318)
T TIGR00742 53 EESPVALQLGGSDP--NDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGN------FGACLM--GNADLVADCVKAMQEAV 122 (318)
T ss_pred CCCcEEEEEccCCH--HHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCC------eehHhh--cCHHHHHHHHHHHHHHh
Confidence 34567777776777 788899999999999999994 3332211111 000111 25667788999999888
Q ss_pred CCcEEEEe--cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 139 SCPIALFT--YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 139 ~iPiilm~--Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++||.+-. .|+.. -..++..++.+.+.+.|++.|. +.+.|... +
T Consensus 123 ~~PVsvKiR~g~~~~------------------------~~~~~~~~~~~~l~~~G~~~it-vHgRt~~~---------q 168 (318)
T TIGR00742 123 NIPVTVKHRIGIDPL------------------------DSYEFLCDFVEIVSGKGCQNFI-VHARKAWL---------S 168 (318)
T ss_pred CCCeEEEEecCCCCc------------------------chHHHHHHHHHHHHHcCCCEEE-EeCCchhh---------c
Confidence 99988864 22110 0123344455555555655443 23333210 1
Q ss_pred ceEEEEecCCccCCCC-CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARA-SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~-~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|.+|... ..++-..+.+.++++.. ++||+..+||.|++++.+.+. |+|||-||.++..
T Consensus 169 ---------g~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~ 228 (318)
T TIGR00742 169 ---------GLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE 228 (318)
T ss_pred ---------CCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence 2222211 12222346688898876 899999999999999999996 8999999988765
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.8e-05 Score=72.94 Aligned_cols=175 Identities=17% Similarity=0.236 Sum_probs=106.7
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-C-CCcEEEEecCcch
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-M-SCPIALFTYYNPI 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~-~iPiilm~Y~n~i 151 (311)
.+.+...++++.|.++|+|.||+|+|++.|. | ++.++.+++. . +.++..+.-....
T Consensus 17 ~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (273)
T cd07941 17 FSVEDKLRIARKLDELGVDYIEGGWPGSNPK-D---------------------TEFFARAKKLKLKHAKLAAFGSTRRA 74 (273)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcCCHH-H---------------------HHHHHHHHHcCCCCcEEEEEeccccc
Confidence 4457889999999999999999999996641 1 2334444432 2 4555555422211
Q ss_pred -hccCHHHHHHHHHHcCCcEEEec----CC--------C----hhhHHHHHHHHHHcCCCeEEEe-----CCCChHHHHH
Q 021527 152 -LKRGVDNFMSTVRDIGIRGLVVP----DV--------P----LEETESLQKEAMKNKIELVLFT-----TPTTPTDRMK 209 (311)
Q Consensus 152 -~~~g~~~fi~~~~~aGadGviip----Dl--------p----~ee~~~~~~~~~~~gi~~I~li-----sp~t~~eri~ 209 (311)
.....++.++.+.++|++.+-+. |. . ++...+..+.++++|+...+.. ++.++.+...
T Consensus 75 ~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~ 154 (273)
T cd07941 75 GVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYAL 154 (273)
T ss_pred CCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHH
Confidence 01112346778899999987763 21 1 1234667788899998754421 1233455544
Q ss_pred HHHH----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 210 AIVE----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 210 ~i~~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++++ ....-+|+....| . ..|..+.++++.+|+..+ +|+-+ .+|... .+....+++|||.+
T Consensus 155 ~~~~~~~~~g~~~i~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~-An~laA~~aGa~~i 224 (273)
T cd07941 155 ATLKAAAEAGADWLVLCDTNG---G--TLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAV-ANSLAAVEAGATQV 224 (273)
T ss_pred HHHHHHHhCCCCEEEEecCCC---C--CCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHH-HHHHHHHHcCCCEE
Confidence 4433 2233466665444 3 357788999999998764 66655 345544 34455567899865
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-05 Score=75.77 Aligned_cols=167 Identities=14% Similarity=0.216 Sum_probs=106.4
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.++-.++++.|.+.|+|.||+|+|...+ . -++.++++++. .+..+..++-
T Consensus 21 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~---~-------------------~~e~i~~i~~~~~~~~i~~~~r------ 72 (365)
T TIGR02660 21 TAAEKLAIARALDEAGVDELEVGIPAMGE---E-------------------ERAVIRAIVALGLPARLMAWCR------ 72 (365)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCH---H-------------------HHHHHHHHHHcCCCcEEEEEcC------
Confidence 45788999999999999999999997431 1 13455666543 3333433331
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCC----------------hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVP----------------LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp----------------~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~- 214 (311)
...+.++.+.++|++.+.+..-. ++...+..+.++++|+.+.+-. .+.++.+.+.++++.
T Consensus 73 -~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~ 151 (365)
T TIGR02660 73 -ARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVA 151 (365)
T ss_pred -CCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHH
Confidence 23677889999999987774311 1224467788899998744332 233345555554443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
....+++.... |. ..|..+.++++.+++..++|+-+ .+|...+ +....+++|||.|
T Consensus 152 ~~~Ga~~i~l~DT~---G~--~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~A-NalaA~~aGa~~v 214 (365)
T TIGR02660 152 AEAGADRFRFADTV---GI--LDPFSTYELVRALRQAVDLPLEMHAHNDLGMATA-NTLAAVRAGATHV 214 (365)
T ss_pred HHcCcCEEEEcccC---CC--CCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHH-HHHHHHHhCCCEE
Confidence 22345555544 43 35778899999999987777655 4555543 4455567999865
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-05 Score=75.99 Aligned_cols=162 Identities=18% Similarity=0.252 Sum_probs=102.1
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE----------------c--CCCC-----------CCC-------
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL----------------G--VPYS-----------DPL------- 104 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl----------------G--~Pfs-----------DP~------- 104 (311)
+...+..|.. -|.+.+.+.++..+++|++.|-+ | +|+. +|.
T Consensus 110 ~~~~~Qly~~---~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~ 186 (356)
T PF01070_consen 110 GPLWFQLYPP---RDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLE 186 (356)
T ss_dssp SEEEEEEEGB---SSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG--
T ss_pred CCeEEEEEEe---cCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCccccccccc
Confidence 3344555553 56688999999999999999998 2 2332 121
Q ss_pred --------CChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCC
Q 021527 105 --------ADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV 176 (311)
Q Consensus 105 --------aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl 176 (311)
.++...+......+....++ +.++++++++++||++-+-.+ .+.++.+.+.|+||+++..-
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w----~~i~~~~~~~~~pvivKgv~~-------~~da~~~~~~G~~~i~vs~h 255 (356)
T PF01070_consen 187 NNEAPPPGDNGAAAARFVGSQFDPSLTW----DDIEWIRKQWKLPVIVKGVLS-------PEDAKRAVDAGVDGIDVSNH 255 (356)
T ss_dssp ---CSSSSTSTCHHHHHHHCHB-TT-SH----HHHHHHHHHCSSEEEEEEE-S-------HHHHHHHHHTT-SEEEEESG
T ss_pred ccccccCCCcchhHHHHHHHhcCCCCCH----HHHHHHhcccCCceEEEeccc-------HHHHHHHHhcCCCEEEecCC
Confidence 12222333222222233444 468888888999999976432 45677888888888877632
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEE
Q 021527 177 PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVA 254 (311)
Q Consensus 177 p~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~ 254 (311)
.-.. .... ++ ..+.|.++++.. ++||+
T Consensus 256 GGr~-------------------------------------------------~d~~-~~-~~~~L~~i~~~~~~~~~i~ 284 (356)
T PF01070_consen 256 GGRQ-------------------------------------------------LDWG-PP-TIDALPEIRAAVGDDIPII 284 (356)
T ss_dssp TGTS-------------------------------------------------STTS--B-HHHHHHHHHHHHTTSSEEE
T ss_pred Cccc-------------------------------------------------Cccc-cc-cccccHHHHhhhcCCeeEE
Confidence 2100 0001 11 224455555533 68999
Q ss_pred EeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 255 VGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 255 vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+.+||++..|+.+.+-.|||.|-+|-.+...+.
T Consensus 285 ~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~ 317 (356)
T PF01070_consen 285 ADGGIRRGLDVAKALALGADAVGIGRPFLYALA 317 (356)
T ss_dssp EESS--SHHHHHHHHHTT-SEEEESHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHH
Confidence 999999999999999999999999999999884
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-05 Score=73.72 Aligned_cols=167 Identities=16% Similarity=0.178 Sum_probs=102.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.++-+++++.|.++|+|.||+|.|-..| .. .+.++.+++. .+..+..+.-
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~-----~~-----------------~~~~~~l~~~~~~~~v~~~~r------ 71 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTSPAASP-----QS-----------------RADCEAIAKLGLKAKILTHIR------ 71 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCH-----HH-----------------HHHHHHHHhCCCCCcEEEEec------
Confidence 35778999999999999999999875443 11 1233333221 2223333222
Q ss_pred cCHHHHHHHHHHcCCcEEEec------------CCChhh----HHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVP------------DVPLEE----TESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviip------------Dlp~ee----~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~- 214 (311)
...+-++.+.++|++.+.+. ....+| ..+..+.+++.|+.+.+.+ +-.++.+++.++.+.
T Consensus 72 -~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~ 150 (262)
T cd07948 72 -CHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAV 150 (262)
T ss_pred -CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHH
Confidence 22457888999999987773 122233 4556678889998755543 223445555544443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...-+++....| . ..|..+.++++.+|+..++|+-+ .+|... .+....+++|+|-|
T Consensus 151 ~~~g~~~i~l~Dt~G---~--~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~-an~~~a~~aG~~~v 213 (262)
T cd07948 151 DKLGVNRVGIADTVG---I--ATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAI-ANAYAALEAGATHI 213 (262)
T ss_pred HHcCCCEEEECCcCC---C--CCHHHHHHHHHHHHHhcCCeEEEEECCCCChHH-HHHHHHHHhCCCEE
Confidence 223356555444 3 35678899999999987777755 345543 44556667999854
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.6e-05 Score=69.39 Aligned_cols=199 Identities=20% Similarity=0.332 Sum_probs=125.9
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
|...|++.-++|+..+-.++..+.| ..++.+..+|.|++.|+...+- .+.+++.+
T Consensus 5 ~~n~lk~~L~~G~~~~G~~~~~~sp------~~~E~~a~~GfD~v~iD~EHg~-------------------~~~~~l~~ 59 (267)
T PRK10128 5 LSNPFKEGLRKGEVQIGLWLSSTTS------YMAEIAATSGYDWLLIDGEHAP-------------------NTIQDLYH 59 (267)
T ss_pred cchHHHHHHHcCCceEEEEecCCCc------HHHHHHHHcCCCEEEEccccCC-------------------CCHHHHHH
Confidence 3444555555688888888988888 6777778899999999865531 45556666
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHH-------------------
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAM------------------- 189 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~------------------- 189 (311)
++..++. ..++.++-.-+| -..+++++.+.|++||++|.+- .||++++++.++
T Consensus 60 ~i~a~~~-~g~~~lVRvp~~------~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~y 132 (267)
T PRK10128 60 QLQAIAP-YASQPVIRPVEG------SKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARW 132 (267)
T ss_pred HHHHHHh-cCCCeEEECCCC------CHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhcc
Confidence 7766664 334444433222 2457889999999999999764 345555555442
Q ss_pred --------HcCCCeEEEeCCCChH--HHHHHHHHhCCce--EEEE-----ecCCccCCCCCCCchHHHHHHHHhhcC---
Q 021527 190 --------KNKIELVLFTTPTTPT--DRMKAIVEASEGF--VYLV-----SSIGVTGARASISGHVQTLLREIKESS--- 249 (311)
Q Consensus 190 --------~~gi~~I~lisp~t~~--eri~~i~~~a~gf--iY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~~--- 249 (311)
..+=+.+.++.-.|++ +.+++|++. +|. +++. ...|..|.. ..+++.+.++++.+.+
T Consensus 133 g~~~~y~~~an~~~~vi~qiEt~~a~~n~~~I~~~-~gvd~i~~G~~Dls~slg~~~~~--~~pev~~ai~~v~~a~~~~ 209 (267)
T PRK10128 133 GRIENYMAQANDSLCLLVQVESKTALDNLDEILDV-EGIDGVFIGPADLSASLGYPDNA--GHPEVQRIIETSIRRIRAA 209 (267)
T ss_pred CChHHHHHHhccccEEEEEECCHHHHHhHHHHhCC-CCCCEEEECHHHHHHHcCCCCCC--CCHHHHHHHHHHHHHHHHc
Confidence 0011112222223433 567777664 444 4442 234544432 3566777788776654
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
++| +|+-..+++++++..+.|++-+.+|+-..-.
T Consensus 210 Gk~--~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~l 243 (267)
T PRK10128 210 GKA--AGFLAVDPDMAQKCLAWGANFVAVGVDTMLY 243 (267)
T ss_pred CCe--EEEcCCCHHHHHHHHHcCCcEEEEChHHHHH
Confidence 455 4666678999999999999999999866443
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.4e-05 Score=70.95 Aligned_cols=167 Identities=14% Similarity=0.228 Sum_probs=103.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.+...++++.|.++|+|.||+|+|...+ -+ .+.++++++. .+..+..++-.|
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~---~~-------------------~e~~~~l~~~~~~~~~~~~~r~~---- 71 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVGIPAMGE---EE-------------------REAIRAIVALGLPARLIVWCRAV---- 71 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCH---HH-------------------HHHHHHHHhcCCCCEEEEeccCC----
Confidence 45788999999999999999999986421 10 2344455442 344444443222
Q ss_pred cCHHHHHHHHHHcCCcEEEecC----C--------C----hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPD----V--------P----LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipD----l--------p----~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~- 214 (311)
.+.++.+.++|++.+-+.. . . ++...+..+.+++.|+++.+.+ ...++.+.+.++++.
T Consensus 72 ---~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (259)
T cd07939 72 ---KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVA 148 (259)
T ss_pred ---HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHH
Confidence 5667888999999776632 1 1 1234567788899998755433 222334554444443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...-+|+....| . ..|.++.++++.+|+..++|+-+ .+|... .+....+++|+|.|
T Consensus 149 ~~~G~~~i~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~-An~laAi~aG~~~v 211 (259)
T cd07939 149 QEAGADRLRFADTVG---I--LDPFTTYELIRRLRAATDLPLEFHAHNDLGLAT-ANTLAAVRAGATHV 211 (259)
T ss_pred HHCCCCEEEeCCCCC---C--CCHHHHHHHHHHHHHhcCCeEEEEecCCCChHH-HHHHHHHHhCCCEE
Confidence 233467765444 3 35778999999999887666544 334433 34556678998865
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-05 Score=74.43 Aligned_cols=182 Identities=18% Similarity=0.224 Sum_probs=107.9
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchh
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPIL 152 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~ 152 (311)
-+.+...++++.|+++|+|.||+|.+- .+ .|.. ...|.....-.+.++.+++. .+.++..|.-..
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~--g~-g~~s--------~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--- 87 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGD--GL-GGSS--------FNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPG--- 87 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCC--CC-CCcc--------ccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccC---
Confidence 445788999999999999999997421 10 0000 00111100012344555432 345666553211
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh----CCceEEEEec
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA----SEGFVYLVSS 224 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~----a~gfiY~vs~ 224 (311)
.+..+.++.+.++|+|.+-+.+-- .+...+..+.+++.|++....+ ++..+++.+.++++. ....+|++..
T Consensus 88 -~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT 166 (337)
T PRK08195 88 -IGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDS 166 (337)
T ss_pred -cccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 233567899999999997765321 2346778888999999766543 444455554444443 3345777765
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcC--CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 225 IGVTGARASISGHVQTLLREIKESS--TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.| . -.|.++.++++.+|+.. ++|+-+ .+|... .+....+++|||.|
T Consensus 167 ~G---~--~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~-ANslaAi~aGa~~i 218 (337)
T PRK08195 167 AG---A--LLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGV-ANSLAAVEAGATRI 218 (337)
T ss_pred CC---C--CCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHH-HHHHHHHHhCCCEE
Confidence 54 2 35778999999999987 455433 223332 34556678999843
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.3e-05 Score=72.72 Aligned_cols=183 Identities=20% Similarity=0.233 Sum_probs=108.5
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchh
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPIL 152 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~ 152 (311)
-+.+...++++.|+++|+|.||+|.+- -+. |. ....|.....-++.++++++. .+..+..|....
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~--gl~-g~--------s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--- 86 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGD--GLG-GS--------SFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG--- 86 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--CCC-Cc--------cccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC---
Confidence 345788999999999999999997321 000 00 000111100112344444433 235555443211
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh----CCceEEEEec
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA----SEGFVYLVSS 224 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~----a~gfiY~vs~ 224 (311)
.+..+.++.+.++|+|.+-+..-- .+...+..+.+++.|++....+ +..++++.+.++++. ....+|++..
T Consensus 87 -~~~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT 165 (333)
T TIGR03217 87 -IGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDS 165 (333)
T ss_pred -ccCHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccC
Confidence 234678999999999998875322 2346778888999999866443 444555555444443 3345777765
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCC-----HHHHHHHHHcCCcEE
Q 021527 225 IGVTGARASISGHVQTLLREIKESSTKPVAVGFGISK-----PEHVQQVAGWGADGV 276 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst-----~e~v~~v~~~GADGv 276 (311)
.|. -.|.++.++++.+|+..+..+-+||-.++ -.+.....++|||-+
T Consensus 166 ~G~-----~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 217 (333)
T TIGR03217 166 AGA-----MLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRI 217 (333)
T ss_pred CCC-----CCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEE
Confidence 542 35778999999999987522344543322 134456668998864
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00025 Score=67.51 Aligned_cols=207 Identities=17% Similarity=0.272 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++++ .++..|= ..+++...-++++.++.+..+|---.|-...+..| .+.+.
T Consensus 5 ~~~~~l~~A~~~~-yav~AfN---~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~----------------~~~~~ 64 (293)
T PRK07315 5 SAEKFVQAARDNG-YAVGGFN---TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGG----------------YKVCK 64 (293)
T ss_pred cHHHHHHHHHHCC-ceEEEEE---ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCc----------------HHHHH
Confidence 3567777766554 4555554 34788889999999999999876543322222121 23345
Q ss_pred HHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE---
Q 021527 129 SMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL--- 197 (311)
Q Consensus 129 ~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~--- 197 (311)
.+++.+.++. ++||.+-. + + |..+.++++.+.|++.|.+ .++|+|| ..++++.++++|+.+-.
T Consensus 65 ~~~~~~a~~~~~~vPV~lHL--D---H-~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG 138 (293)
T PRK07315 65 NLIENLVESMGITVPVAIHL--D---H-GHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVG 138 (293)
T ss_pred HHHHHHHHHcCCCCcEEEEC--C---C-CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 5677766666 78999853 2 2 3346889999999999988 4788876 66788888888764321
Q ss_pred ----------EeCCCChHHHHHHHHHhCCceEEEEecCCcc-CCC-CCCCchHHHHHHHHhhcC-CCcEEEee--CCCCH
Q 021527 198 ----------FTTPTTPTDRMKAIVEASEGFVYLVSSIGVT-GAR-ASISGHVQTLLREIKESS-TKPVAVGF--GISKP 262 (311)
Q Consensus 198 ----------lisp~t~~eri~~i~~~a~gfiY~vs~~G~T-G~~-~~~~~~~~~~l~~vk~~~-~~Pv~vGf--GIst~ 262 (311)
..+.-|+++...+.. ..|..|+.-..|.. |.- +..+.--.+.|+++++.+ ++|++.=+ ||+ .
T Consensus 139 ~i~g~ed~~~g~s~~t~peea~~f~--~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~ 215 (293)
T PRK07315 139 TIGGEEDGIIGKGELAPIEDAKAMV--ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-D 215 (293)
T ss_pred cccCcCccccCccCCCCHHHHHHHH--HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCC-H
Confidence 112213445555554 36777874333311 111 111112246799999988 59986633 475 7
Q ss_pred HHHHHHHHcCCcEEEEhhHhhc
Q 021527 263 EHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|+++++.+.|+++|-|+|.+..
T Consensus 216 e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 216 DQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHHHHHHcCCCEEEEccHHHH
Confidence 9999999999999999999974
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00056 Score=64.75 Aligned_cols=206 Identities=20% Similarity=0.277 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++++ -++..|= -.+++...-++++.++.++.+|--..|..-.+ ...+.+.
T Consensus 5 ~~k~ll~~A~~~~-yaV~AfN---~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~-----------------~g~~~~~ 63 (283)
T PRK07998 5 NGRILLDRIQEKH-VLAGAFN---TTNLETTISILNAIERSGLPNFIQIAPTNAQL-----------------SGYDYIY 63 (283)
T ss_pred cHHHHHHHHHHCC-CEEEEEe---eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhh-----------------CCHHHHH
Confidence 3566777766554 4555554 34778888999999999999886643321111 2244456
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCe-EE--Ee
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIEL-VL--FT 199 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~-I~--li 199 (311)
.+++...++.++||.+.. + +.-..+.++.|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+ .- .+
T Consensus 64 ~~~~~~A~~~~vPV~lHL--D---H~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (283)
T PRK07998 64 EIVKRHADKMDVPVSLHL--D---HGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAI 138 (283)
T ss_pred HHHHHHHHHCCCCEEEEC--c---CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 678888888899999853 2 222246788899999999999 5688875 667889999999753 11 11
Q ss_pred -C----------CCChHHHHHHHHHhCCceEEE----EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCCH
Q 021527 200 -T----------PTTPTDRMKAIVEASEGFVYL----VSSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISKP 262 (311)
Q Consensus 200 -s----------p~t~~eri~~i~~~a~gfiY~----vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst~ 262 (311)
. .-|.++...+..+.. |...+ .+..|..- + |.-..+.++++++.+++|++. |.|+. .
T Consensus 139 gg~ed~~~~~~~~~T~pe~a~~Fv~~T-gvD~LAvaiGt~HG~Y~---~-p~l~~~~l~~I~~~~~vPLVlHGgSG~~-~ 212 (283)
T PRK07998 139 LGKEDDHVSEADCKTEPEKVKDFVERT-GCDMLAVSIGNVHGLED---I-PRIDIPLLKRIAEVSPVPLVIHGGSGIP-P 212 (283)
T ss_pred CCccccccccccccCCHHHHHHHHHHh-CcCeeehhccccccCCC---C-CCcCHHHHHHHHhhCCCCEEEeCCCCCC-H
Confidence 1 123445555555533 33333 23344321 1 211247899999989999876 66775 5
Q ss_pred HHHHHHHHcCCcEEEEhhHhhchh
Q 021527 263 EHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|++++..+.|+-.+=|||.+....
T Consensus 213 e~~~~ai~~Gi~KiNi~Tel~~a~ 236 (283)
T PRK07998 213 EILRSFVNYKVAKVNIASDLRKAF 236 (283)
T ss_pred HHHHHHHHcCCcEEEECHHHHHHH
Confidence 999999999999999999987644
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-05 Score=75.28 Aligned_cols=179 Identities=20% Similarity=0.269 Sum_probs=106.3
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+ ++..+|++++=+-+=--|-.. ...+++++.+..- + +.++ -|
T Consensus 90 tg~y~s~~~~~~---a~~asg~e~vTva~rr~~~~~----------------~~~~~~~~~~~~~----~--~~~l--pN 142 (326)
T PRK11840 90 TGKYKDFEETAA---AVEASGAEIVTVAVRRVNVSD----------------PGAPMLTDYIDPK----K--YTYL--PN 142 (326)
T ss_pred cCCCCCHHHHHH---HHHHhCCCEEEEEEEeecCcC----------------CCcchHHHhhhhc----C--CEEC--cc
Confidence 666777665554 455689999977422211000 0112344444321 2 2332 25
Q ss_pred chhccCHHHHHH---HHHHcCCcEE----EecC--CChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGL----VVPD--VPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGv----iipD--lp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+--.+..++-++ .+.+++-.-+ +++| ....+..+..+.++.. |+...++++++. .-.+++++. |
T Consensus 143 Tag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~--~~a~~l~~~--g 218 (326)
T PRK11840 143 TAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDP--IAAKRLEDA--G 218 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHhc--C
Confidence 544555555443 4556543322 2343 2223445566666666 999878888763 333344443 4
Q ss_pred eEEEEe---cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVS---SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs---~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+-++. ..| ||. ++. -.+.|+.+.+..++||++|-||.+++|+.+..+.|||||-+-|++.+
T Consensus 219 ~~avmPl~~pIG-sg~--gv~--~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 219 AVAVMPLGAPIG-SGL--GIQ--NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred CEEEeecccccc-CCC--CCC--CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceecc
Confidence 444432 333 443 343 23678888777889999999999999999999999999999999986
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.9e-06 Score=78.69 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHhhccCCCcEEE--Ee----cCc--chh--ccCHHHHHHHHHH-cCCcEEEecCCChhhHHHHHHHHHH
Q 021527 122 TNFNAILSMLKEVVPQMSCPIAL--FT----YYN--PIL--KRGVDNFMSTVRD-IGIRGLVVPDVPLEETESLQKEAMK 190 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiil--m~----Y~n--~i~--~~g~~~fi~~~~~-aGadGviipDlp~ee~~~~~~~~~~ 190 (311)
...+++-++++++++.+..|... ++ +.| .+. ..+.++..+.+.+ .|+--+... +. +-..++.+.++.
T Consensus 48 ~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~-~g-~~~~~~i~~~~~ 125 (336)
T COG2070 48 LPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTS-FG-APPAEFVARLKA 125 (336)
T ss_pred CCHHHHHHHHHHHHHhcCCcchhcccccccccchhheecccccchHHhhhhHHhcCCCCEEecc-CC-CCcHHHHHHHHH
Confidence 34456667888888877777321 11 112 111 1344555554433 366555443 11 013446677788
Q ss_pred cCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-e-cCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHH
Q 021527 191 NKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-S-SIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQ 267 (311)
Q Consensus 191 ~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s-~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~ 267 (311)
+|+.++..+. +. ...++..+.....+-++ . .-|-+|. ...+.....++.++++..+ +||++.+||.+.+++..
T Consensus 126 ~g~~v~~~v~--~~-~~A~~~~~~G~d~vI~~g~eAGGH~g~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~A 201 (336)
T COG2070 126 AGIKVIHSVI--TV-REALKAERAGADAVIAQGAEAGGHRGG-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAA 201 (336)
T ss_pred cCCeEEEEeC--CH-HHHHHHHhCCCCEEEecCCcCCCcCCC-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHH
Confidence 8987665543 32 33333334333333333 2 1123332 1225567889999999998 89999999999999999
Q ss_pred HHHcCCcEEEEhhHhhchhhh
Q 021527 268 VAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 268 v~~~GADGvIVGSaiv~~~~~ 288 (311)
.+.+|||||.+||.|.-..|.
T Consensus 202 AlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 202 ALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred HHHhccHHHHhhhhhhccccc
Confidence 999999999999999987753
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0001 Score=68.78 Aligned_cols=167 Identities=18% Similarity=0.255 Sum_probs=104.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.+..+++++.|.++|+|.||+|+|...|- + ++.++.+++. .+.++..+.-.|
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~---~-------------------~~~~~~l~~~~~~~~~~~l~r~~---- 71 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAASPG---D-------------------FEAVKRIAREVLNAEICGLARAV---- 71 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHH---H-------------------HHHHHHHHHhCCCCEEEEEccCC----
Confidence 457889999999999999999998764331 0 1344555442 356666654222
Q ss_pred cCHHHHHHHHHHcC----CcEEEecCC------------C----hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHH
Q 021527 154 RGVDNFMSTVRDIG----IRGLVVPDV------------P----LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAI 211 (311)
Q Consensus 154 ~g~~~fi~~~~~aG----adGviipDl------------p----~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i 211 (311)
.+.++.+.++| ++.+-+.+- . ++...+..+.+++.|++..+.. ++.++.+...++
T Consensus 72 ---~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~ 148 (268)
T cd07940 72 ---KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEV 148 (268)
T ss_pred ---HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHH
Confidence 56788888888 888777431 1 2345567888899998755432 222345554444
Q ss_pred HHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC---CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 212 VEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST---KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 212 ~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~---~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++. ...-+|+....| . ..|.++.++++.+|+..+ +|+-+ .+|... .+....+++|+|-|
T Consensus 149 ~~~~~~~G~~~i~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~-An~laAi~aG~~~i 218 (268)
T cd07940 149 VEAAIEAGATTINIPDTVG---Y--LTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAV-ANSLAAVEAGARQV 218 (268)
T ss_pred HHHHHHcCCCEEEECCCCC---C--CCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHH-HHHHHHHHhCCCEE
Confidence 433 233466665444 3 357789999999999764 45433 233332 34556667898755
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.8e-05 Score=74.35 Aligned_cols=157 Identities=25% Similarity=0.338 Sum_probs=94.0
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcC------CCHHHHHHHHHH
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARG------TNFNAILSMLKE 133 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G------~~~~~~~~~i~~ 133 (311)
...+++=|...+| +.+.+.++.+.+.|+|.|.| |=|. .++.+.| .+.+.+.++++.
T Consensus 53 ~~p~~~Ql~g~~~--~~~~~aa~~~~~~~~~~IDlN~GCP~--------------~~v~~~g~Ga~Ll~~p~~~~~iv~~ 116 (309)
T PF01207_consen 53 ERPLIVQLFGNDP--EDLAEAAEIVAELGFDGIDLNMGCPA--------------PKVTKGGAGAALLKDPDLLAEIVKA 116 (309)
T ss_dssp T-TEEEEEE-S-H--HHHHHHHHHHCCTT-SEEEEEE---S--------------HHHHHCT-GGGGGC-HHHHHHHHHH
T ss_pred ccceeEEEeeccH--HHHHHHHHhhhccCCcEEeccCCCCH--------------HHHhcCCcChhhhcChHHhhHHHHh
Confidence 3468887777777 88899999998889999999 4444 1122233 377888899999
Q ss_pred hhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH
Q 021527 134 VVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 134 ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~ 213 (311)
+++.+++||-+-.-. |. + -..++..++.+.+.+.|++.|. +.+.|..++
T Consensus 117 ~~~~~~~pvsvKiR~------g~------------~------~~~~~~~~~~~~l~~~G~~~i~-vH~Rt~~q~------ 165 (309)
T PF01207_consen 117 VRKAVPIPVSVKIRL------GW------------D------DSPEETIEFARILEDAGVSAIT-VHGRTRKQR------ 165 (309)
T ss_dssp HHHH-SSEEEEEEES------EC------------T--------CHHHHHHHHHHHHTT--EEE-EECS-TTCC------
T ss_pred hhcccccceEEeccc------cc------------c------cchhHHHHHHHHhhhcccceEE-EecCchhhc------
Confidence 999889998775421 11 1 0123334444444444443332 223332111
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
..| + ...+.++++++.+++||++.+||.|++++.++++. |+|||.||-+.+.
T Consensus 166 -------------~~~-----~-a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 166 -------------YKG-----P-ADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp -------------CTS---------HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred -------------CCc-----c-cchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 111 1 12467999999999999999999999999999987 9999999977654
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0001 Score=72.36 Aligned_cols=166 Identities=19% Similarity=0.242 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~ 154 (311)
.+.-.++++.|.+.|+|.||+|+|...| .+ ++.++.+++. .+..+..++ .
T Consensus 25 ~e~k~~ia~~L~~~GV~~IE~G~p~~~~---~~-------------------~e~i~~i~~~~~~~~i~~~~-------r 75 (378)
T PRK11858 25 NEEKLAIARMLDEIGVDQIEAGFPAVSE---DE-------------------KEAIKAIAKLGLNASILALN-------R 75 (378)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCcCh---HH-------------------HHHHHHHHhcCCCeEEEEEc-------c
Confidence 4678999999999999999999998532 21 2345555432 232233322 1
Q ss_pred CHHHHHHHHHHcCCcEEEecC----C--------Ch----hhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh--
Q 021527 155 GVDNFMSTVRDIGIRGLVVPD----V--------PL----EETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA-- 214 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipD----l--------p~----ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~-- 214 (311)
...+.++.+.++|++.+.+.. . .. +...+..+.+++.|+.+.+.. ...++.+.+.++++.
T Consensus 76 ~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~ 155 (378)
T PRK11858 76 AVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAE 155 (378)
T ss_pred cCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHH
Confidence 235678899999999877742 1 11 234557778899998755432 223445555555443
Q ss_pred --CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 --SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 --a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...-+|+....| . ..|..+.++++.+++.+++|+-+ .+|...+ +....+++||+.|
T Consensus 156 ~~Ga~~I~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~A-N~laAv~aGa~~v 217 (378)
T PRK11858 156 EAGADRVRFCDTVG---I--LDPFTMYELVKELVEAVDIPIEVHCHNDFGMATA-NALAGIEAGAKQV 217 (378)
T ss_pred hCCCCEEEEeccCC---C--CCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHH-HHHHHHHcCCCEE
Confidence 223456655444 3 35778899999999887777655 4455543 4445567999876
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.4e-05 Score=74.57 Aligned_cols=160 Identities=13% Similarity=0.168 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHhhcc-C-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC---CChhhHHHHHHHHHHcCCC-
Q 021527 121 GTNFNAILSMLKEVVPQ-M-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD---VPLEETESLQKEAMKNKIE- 194 (311)
Q Consensus 121 G~~~~~~~~~i~~ir~~-~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD---lp~ee~~~~~~~~~~~gi~- 194 (311)
|.+.+++-+.|+++|+. + +.|+.+....++-...-.++.++.+.+.|+.-+.... +++. . ...+.+|+.
T Consensus 47 ~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~-~----~~~r~~G~~~ 121 (418)
T cd04742 47 GLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTPA-L----VRYRAKGLRR 121 (418)
T ss_pred CCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCcc-h----hhHHhcCCcc
Confidence 35667777889999886 4 7898885443322111124578888889998766543 2221 1 133445543
Q ss_pred -----------eEEEeC----------CCChHHHHHHHHHhC---------------CceEEEEec-CCccCCCCCCCch
Q 021527 195 -----------LVLFTT----------PTTPTDRMKAIVEAS---------------EGFVYLVSS-IGVTGARASISGH 237 (311)
Q Consensus 195 -----------~I~lis----------p~t~~eri~~i~~~a---------------~gfiY~vs~-~G~TG~~~~~~~~ 237 (311)
++.-++ |- |++-++++.+.. .+.|.+..- -|.||... ...
T Consensus 122 ~~~g~~~~~~~ViakVsr~evAs~~f~pp-p~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~g~~~--~~~ 198 (418)
T cd04742 122 DADGRVQIANRIIAKVSRPEVAEAFMSPA-PERILKKLLAEGKITEEQAELARRVPVADDITVEADSGGHTDNRP--LSV 198 (418)
T ss_pred cccccccccceEEEecCChhhhhhhcCCC-CHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEcccCCCCCCCcc--HHh
Confidence 222221 11 122233332221 234443321 13343321 123
Q ss_pred HHHHHHHHhhcC--------CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 238 VQTLLREIKESS--------TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 238 ~~~~l~~vk~~~--------~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
+...+.+++... ++||++.+||.|++.+..++.+|||||.+||.|.-..|.
T Consensus 199 Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea 257 (418)
T cd04742 199 LLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEA 257 (418)
T ss_pred HHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccc
Confidence 444455555433 589999999999999999999999999999999987764
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-05 Score=72.97 Aligned_cols=200 Identities=16% Similarity=0.120 Sum_probs=114.3
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNP 150 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~ 150 (311)
..|+.++..++++.|.. .+|++|+|.|. + +..| ++.++++++.. +.+|++..-+.+
T Consensus 11 D~~~~~~A~~l~~~l~~-~v~~iKVG~~L---------~-------~~~G------~~~i~~lk~~~~~~~IflDlKl~D 67 (218)
T PRK13305 11 DHTSLEAAQRDVTLLKD-HVDIVEAGTIL---------C-------LNEG------LGAVKALREQCPDKIIVADWKVAD 67 (218)
T ss_pred CCCCHHHHHHHHHHccc-cCCEEEECHHH---------H-------HHhC------HHHHHHHHHhCCCCEEEEEeeccc
Confidence 78999999999999875 68999999554 1 1223 45788888763 567887764443
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCC-eEEEeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIE-LVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~-~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
+-. -..+.+.+.|+|-+.+.-... +-.....+.++++|-+ .+-++.-+|. ++.+++.+ .|+.+++-..+..
T Consensus 68 Ip~----tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~t~-~~~~~l~~--~g~~~~v~h~a~~ 140 (218)
T PRK13305 68 AGE----TLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNWTL-DDARDWHR--IGVRQAIYHRGRD 140 (218)
T ss_pred ChH----HHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEecCc-chHHHHHH--cCCHHHHHHHHHH
Confidence 321 233456789998655543332 3344455544554432 1122222232 33333433 2322222121211
Q ss_pred CCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHH
Q 021527 229 GARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 306 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l 306 (311)
....+.--+. ..+..+|+.. +.++.|-.||+ ++.....-+.+.|-+|||.+|++. .+| .+.++++.+++
T Consensus 141 a~~~G~v~s~-~e~~~ir~~~~~~~~i~VtpGIr-~~~~~~~dq~rvd~iVVGR~It~A----~dP---~~aa~~i~~~i 211 (218)
T PRK13305 141 AQASGQQWGE-ADLARMKALSDIGLELSITGGIT-PADLPLFKDIRVKAFIAGRALAGA----ANP---AQVAADFHAQI 211 (218)
T ss_pred HHHhCCCCCH-HHHHHHHHHhCCCCcEEEeCCcC-ccccccccccCCCEEEECCcccCC----CCH---HHHHHHHHHHH
Confidence 1111111111 2356666654 46699999997 677777777889999999999983 234 34555555666
Q ss_pred HhhC
Q 021527 307 KSAL 310 (311)
Q Consensus 307 ~~~~ 310 (311)
++.+
T Consensus 212 ~~~~ 215 (218)
T PRK13305 212 DAIW 215 (218)
T ss_pred HHhh
Confidence 5443
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.4e-06 Score=75.07 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+.++.+.+. -..+|+++..|.- .+.++ ..++++++.+.+++|+.+|+||++.|+++++++.|+|+|||||+.
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~---~g~~~-n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa 105 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAF---EGKPK-NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKA 105 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchh---cCCcc-hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchh
Confidence 455666666665 4556778776642 12222 246788888888999999999999999999999999999999997
Q ss_pred h
Q 021527 283 V 283 (311)
Q Consensus 283 v 283 (311)
+
T Consensus 106 ~ 106 (228)
T PRK04128 106 F 106 (228)
T ss_pred c
Confidence 7
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-05 Score=70.74 Aligned_cols=184 Identities=20% Similarity=0.247 Sum_probs=97.8
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+. +..+|++++=+-+==-++-.. -..++ +++.++ ..++.+.- |
T Consensus 15 Tgky~s~~~m~~a---i~aSg~evvTvalRR~~~~~~---------------~~~~~---~~~~i~-~~~~~lLP----N 68 (247)
T PF05690_consen 15 TGKYPSPEVMREA---IEASGAEVVTVALRRVNLGSK---------------PGGDN---ILDYID-RSGYTLLP----N 68 (247)
T ss_dssp -STSSSHHHHHHH---HHHTT-SEEEEECCGSTTTS----------------TTCHH---CCCCTT-CCTSEEEE----E
T ss_pred cCCCCCHHHHHHH---HHHhCCcEEEEEEecccCCCC---------------CCCcc---HHHHhc-ccCCEECC----c
Confidence 7778887766554 455999999995322222110 00112 222222 12333333 4
Q ss_pred chhccCHHHHHH---HHHHcCCcEEE----ecC----CC-hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGLV----VPD----VP-LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGvi----ipD----lp-~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+--.+..++-++ .+.+++-.-.| ++| +| +-|..+-.+.+.+.|+.+.++++++-.. .+++.+ -|
T Consensus 69 TaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~--akrL~d--~G 144 (247)
T PF05690_consen 69 TAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVL--AKRLED--AG 144 (247)
T ss_dssp -TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHH--HHHHHH--TT
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHH--HHHHHH--CC
Confidence 444444555443 45666533222 243 12 1244445556677899999999876432 223333 34
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.--++..-..-|+..++.+ ...|+.+++..++||+|.-||.+|.|+.+..+.|+|||.|-|++.+.
T Consensus 145 caavMPlgsPIGSg~Gi~n--~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A 210 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQN--PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKA 210 (247)
T ss_dssp -SEBEEBSSSTTT---SST--HHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTS
T ss_pred CCEEEecccccccCcCCCC--HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhcc
Confidence 3333333223455445543 35788888888999999999999999999999999999999999873
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-05 Score=74.72 Aligned_cols=154 Identities=19% Similarity=0.220 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC----
Q 021527 78 TTAEALKLLDSCGSDIIELGV-----------PYSDPLAD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQMS---- 139 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~---- 139 (311)
.+.+.++.+.++|.|+|||-. |.++---| |. +.+- .+=++++++.||+.+.
T Consensus 145 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGs-lenR----------~r~~~eii~~vr~~vg~~~~ 213 (353)
T cd04735 145 AFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGS-LENR----------MRFPLAVVKAVQEVIDKHAD 213 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCc-HHHH----------HHHHHHHHHHHHHHhccccC
Confidence 578888999999999999953 43332222 22 2211 1224667778887654
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
.++.+..-.| .+++. -..+..+|..++.+.+.+.|++.|-+...... .. .
T Consensus 214 ~~~~v~~R~s------~~~~~------------~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~-~~-----~------ 263 (353)
T cd04735 214 KDFILGYRFS------PEEPE------------EPGIRMEDTLALVDKLADKGLDYLHISLWDFD-RK-----S------ 263 (353)
T ss_pred CCceEEEEEC------ccccc------------CCCCCHHHHHHHHHHHHHcCCCEEEeccCccc-cc-----c------
Confidence 3333322222 11111 11334577777888888888887765432211 00 0
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+ ..+ ....+.++.+|+.. ++||++.+||++++++.++++.|+|.|-+|.+++.
T Consensus 264 ~------~~~------~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 264 R------RGR------DDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred c------cCC------cchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 0 000 00123455566654 78999999999999999999999999999988875
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=72.54 Aligned_cols=78 Identities=31% Similarity=0.393 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+.+.++.+.+..-..+|+.+..|. .|. +. ..+.++++++.+++||.+|+||++.|+++++++.|||+|++|++
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~----~~-~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGK----PV-NLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCC----cc-cHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECch
Confidence 4556666665544455777766553 232 11 24678888888899999999999999999999999999999999
Q ss_pred hhch
Q 021527 282 MVKL 285 (311)
Q Consensus 282 iv~~ 285 (311)
+.+.
T Consensus 106 ~l~~ 109 (233)
T PRK00748 106 AVKN 109 (233)
T ss_pred HHhC
Confidence 9873
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.3e-05 Score=73.94 Aligned_cols=152 Identities=13% Similarity=0.168 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHCCCCEEEEc-----------CCCCCCCCChHHHHHHHHHHHHcCCCH----HHHHHHHHHhhccCCCcE
Q 021527 78 TTAEALKLLDSCGSDIIELG-----------VPYSDPLADGPVIQAAATRSLARGTNF----NAILSMLKEVVPQMSCPI 142 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG-----------~PfsDP~aDGp~Iq~a~~~Al~~G~~~----~~~~~~i~~ir~~~~iPi 142 (311)
.+.+.++.+.++|.|+|||- -|+++---| +.|=++ +=++++++.||+.++.||
T Consensus 143 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD------------~yGGslenR~Rf~~eii~~ir~~~~~~v 210 (337)
T PRK13523 143 AFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTD------------EYGGSPENRYRFLREIIDAVKEVWDGPL 210 (337)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCC------------CCCCCHHHHHHHHHHHHHHHHHhcCCCe
Confidence 57888899999999999993 244333223 122222 334678888888777777
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-. ..+++. -..+..||..++.+.+.+.|++.+-+...+... ...
T Consensus 211 ~vRi--------s~~d~~------------~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~---------~~~----- 256 (337)
T PRK13523 211 FVRI--------SASDYH------------PGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP---------ARI----- 256 (337)
T ss_pred EEEe--------cccccC------------CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC---------CCC-----
Confidence 7632 111111 112446788888888888898877764432110 000
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
....| . ..++.+++|+.+++||++.++|++++++.++++.| +|.|-+|-+++.
T Consensus 257 --~~~~~----~---~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 257 --DVYPG----Y---QVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred --CCCcc----c---cHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 00011 1 23567888998999999999999999999999887 999988887765
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00014 Score=67.88 Aligned_cols=172 Identities=21% Similarity=0.307 Sum_probs=103.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|||+|.+|...+.|-+++-..+. .++.+..+++.+++..++|+-+-+|.
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~----------E~~rl~~~v~~i~~~~~~plSIDT~~------ 85 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEE----------ELERVIPVLEALRGELDVLISVDTFR------ 85 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHH----------HHHHHHHHHHHHHhcCCCcEEEeCCC------
Confidence 45788999999999999999999877777555321111 12334567888888789999998874
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhH-HHHHHHHHHcCCCeEEEeC---CCC----------hHHHHHHHH---H--hC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEET-ESLQKEAMKNKIELVLFTT---PTT----------PTDRMKAIV---E--AS 215 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~-~~~~~~~~~~gi~~I~lis---p~t----------~~eri~~i~---~--~a 215 (311)
.+-++.+.+.|++ ++.|+..+.. .++.+.++++|...|.+-. |.+ .++++.... + ..
T Consensus 86 --~~v~e~al~~G~~--iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (257)
T cd00739 86 --AEVARAALEAGAD--IINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAES 161 (257)
T ss_pred --HHHHHHHHHhCCC--EEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3456777778877 4666554432 5677888999998887543 222 122321111 1 12
Q ss_pred Cc----eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH
Q 021527 216 EG----FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG 270 (311)
Q Consensus 216 ~g----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~ 270 (311)
.| -+|+-...|.+.+ ...+..+.+.++++|+. +.|+++|. |+..-+..+.+
T Consensus 162 ~Gi~~~~Ii~DPg~gf~ks-~~~~~~~l~~i~~l~~~-~~pil~G~--SrkSfig~~~~ 216 (257)
T cd00739 162 AGVARNRIILDPGIGFGKT-PEHNLELLRRLDELKQL-GLPVLVGA--SRKSFIGALLG 216 (257)
T ss_pred cCCCHHHEEEecCCCcccC-HHHHHHHHHHHHHHHhC-CCcEEEEe--cccHHHHHhcC
Confidence 34 3566555553222 11122334445555554 88998764 44444444443
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.9e-05 Score=68.69 Aligned_cols=164 Identities=23% Similarity=0.384 Sum_probs=98.6
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe-------cCcchh
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT-------YYNPIL 152 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~-------Y~n~i~ 152 (311)
.+-+...+++|+|-|||+ +-++.| |+|.. +-.+++.++..++|+..|. .||.-.
T Consensus 11 ~~~l~~A~~~GAdRiELC----~~La~G-------------G~TPS--yG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E 71 (241)
T COG3142 11 VEGLLAAQAAGADRIELC----DALAEG-------------GLTPS--YGVIKEAVELSKIPVYVMIRPRGGDFVYSDDE 71 (241)
T ss_pred HhhHHHHHHcCCceeehh----hccccC-------------CCCCC--HHHHHHHHhhcCCceEEEEecCCCCcccChHH
Confidence 467788899999999997 223333 44432 3477777777999999994 222111
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC------hhhHHHHHHHHHHcCCCeEEE----eCCCChHHHHHHHHHhCCceEEEE
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP------LEETESLQKEAMKNKIELVLF----TTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp------~ee~~~~~~~~~~~gi~~I~l----isp~t~~eri~~i~~~a~gfiY~v 222 (311)
..=..+.++.++++|++||++.-+. .+-.+++.+.+ .|+++.+- ..++ +.+.++.+.+ .||-=+.
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA--~gL~vTFHrAFD~~~d-~~~ale~li~--~Gv~RIL 146 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAA--GGLGVTFHRAFDECPD-PLEALEQLIE--LGVERIL 146 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHc--cCCceeeehhhhhcCC-HHHHHHHHHH--CCCcEEe
Confidence 1123567888999999999985322 22344454443 36665553 2343 4455655544 5554444
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-C-CcEEEeeCCCCHHHHHHH-HHcCC
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-T-KPVAVGFGISKPEHVQQV-AGWGA 273 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~-~Pv~vGfGIst~e~v~~v-~~~GA 273 (311)
++|.+.+... -.+.++++-+.. + +-|++|.||+ ++|++.+ ...|+
T Consensus 147 ----TsGg~~sa~e-g~~~l~~li~~a~gri~Im~GaGV~-~~N~~~l~~~tg~ 194 (241)
T COG3142 147 ----TSGGKASALE-GLDLLKRLIEQAKGRIIIMAGAGVR-AENIAELVLLTGV 194 (241)
T ss_pred ----cCCCcCchhh-hHHHHHHHHHHhcCCEEEEeCCCCC-HHHHHHHHHhcCc
Confidence 3444433222 234555544443 3 5688899997 7999998 44443
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00015 Score=73.99 Aligned_cols=171 Identities=18% Similarity=0.234 Sum_probs=103.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.+.-+++++.|++.|+|.||+|+|++.|- | ++.++++.+. .+..+..++-.+ .
T Consensus 24 s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~-d---------------------~~~v~~i~~~~~~~~i~a~~r~~---~ 78 (513)
T PRK00915 24 TVEEKLQIAKQLERLGVDVIEAGFPASSPG-D---------------------FEAVKRIARTVKNSTVCGLARAV---K 78 (513)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCChH-H---------------------HHHHHHHHhhCCCCEEEEEccCC---H
Confidence 347789999999999999999999997651 1 2344555433 345566665333 1
Q ss_pred cCHHHHHHHHHHcCCcEEEec----CCC--------hh----hHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVP----DVP--------LE----ETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviip----Dlp--------~e----e~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~- 214 (311)
..++.-.+..+++|++.+.+. |+- .+ ...+..+.++++|+++.+.. ...++.+.+.++++.
T Consensus 79 ~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 79 KDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAA 158 (513)
T ss_pred HHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHH
Confidence 123333333447787766653 221 12 24567888899998865544 223345555444443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST----KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
....+++....| . ..|..+.++++.+++.++ +|+-+ .+|...++ ....+++||+.|
T Consensus 159 ~~~Ga~~i~l~DTvG---~--~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvAN-slaAv~aGa~~V 225 (513)
T PRK00915 159 IDAGATTINIPDTVG---Y--TTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVAN-SLAAVEAGARQV 225 (513)
T ss_pred HHcCCCEEEEccCCC---C--CCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHH-HHHHHHhCCCEE
Confidence 223455555444 3 357788899999988764 55544 34665444 445567999865
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.5e-05 Score=69.51 Aligned_cols=161 Identities=17% Similarity=0.268 Sum_probs=99.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+...+.++.+.+.|||+|.+|...+.|-++- |..- ...+.+...++.+++..++|+.+.+|.
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~--~~~~--------~E~~rl~~~v~~l~~~~~~piSIDT~~------ 85 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTRPGAEP--VSVE--------EELERVIPVLRALAGEPDVPISVDTFN------ 85 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc--CCHH--------HHHHHHHHHHHHHHhcCCCeEEEeCCc------
Confidence 457889999999999999999999888785421 1000 112345668888888789999998863
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhH-HHHHHHHHHcCCCeEEEeCCC-------------ChHHHHHHHHH-----hC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEET-ESLQKEAMKNKIELVLFTTPT-------------TPTDRMKAIVE-----AS 215 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~-~~~~~~~~~~gi~~I~lisp~-------------t~~eri~~i~~-----~a 215 (311)
.+-++.+.+.|++ ++.|..-+.. .++.+.++++|...|.+.... +.+++.+...+ ..
T Consensus 86 --~~v~~aaL~~g~~--iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (258)
T cd00423 86 --AEVAEAALKAGAD--IINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATE 161 (258)
T ss_pred --HHHHHHHHHhCCC--EEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3456777888866 4666655443 567788999998877765422 22333222111 12
Q ss_pred Cc----eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEe
Q 021527 216 EG----FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVG 256 (311)
Q Consensus 216 ~g----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG 256 (311)
.| -+++-...|.-. .......+.+.++++|+..+.|+++|
T Consensus 162 ~Gi~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~~~~~g~Pil~G 205 (258)
T cd00423 162 AGIPPEDIILDPGIGFGK-TEEHNLELLRRLDAFRELPGLPLLLG 205 (258)
T ss_pred cCCCHHHEEEeCCCCccC-CHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 34 456655555322 11112234444555555447899887
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.5e-05 Score=73.32 Aligned_cols=168 Identities=22% Similarity=0.210 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCH----HHHHHHHHHhhccCCCcEEEEecC
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNF----NAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~----~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
.+.+.++.+.++|.|.|||-. +.|-.+++- +.|--+.|-++ +-++++++.||+.+..++.+..
T Consensus 142 ~f~~AA~ra~~aGfDgVeih~------ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~i-- 213 (343)
T cd04734 142 AFADAARRCQAGGLDGVELQA------AHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGI-- 213 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEcc------ccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEE--
Confidence 577888899999999999942 122221111 11111123222 3457788888888765554432
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcC-CCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK-IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~g-i~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~ 227 (311)
+.+.+++. .+| +..+|..++.+.+.+.| ++.+-+........+ ++.+.. +.
T Consensus 214 ----Rl~~~~~~-------~~G-----~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~---------~~~~~~---~~ 265 (343)
T cd04734 214 ----RISGDEDT-------EGG-----LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLL---------GLAHVV---PS 265 (343)
T ss_pred ----Eeehhhcc-------CCC-----CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCccc---------cccccc---CC
Confidence 22222221 111 34567777888888887 787765443321110 000000 00
Q ss_pred cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 228 TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
+... +....++++++|+.+++||++.+||.+++++.++++.| +|+|-+|-.++.
T Consensus 266 ~~~~---~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 266 MGMP---PGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred CCCC---cchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 0000 11124678889998899999999999999999999876 999999988775
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00054 Score=67.17 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec----CCCh---h-hHHHHHHHHHHcCC
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP----DVPL---E-ETESLQKEAMKNKI 193 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip----Dlp~---e-e~~~~~~~~~~~gi 193 (311)
++.+.+.++++++++. .+++-+ ..++. ...+.++.+.++|+|.|.+. |--+ + ....+.+.+++.++
T Consensus 115 ~~p~l~~~iv~~~~~~-~V~v~v--r~~~~---~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~i 188 (368)
T PRK08649 115 IKPELITERIAEIRDA-GVIVAV--SLSPQ---RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDV 188 (368)
T ss_pred CCHHHHHHHHHHHHhC-eEEEEE--ecCCc---CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCC
Confidence 3445566788888874 444433 22321 24678899999999999883 2111 1 24456777777787
Q ss_pred CeEEEeCCCChHHHHHHHHHhCCceEEE-EecCCccCCC----CCCCchHHHHHHHHhh----c------CCCcEEEeeC
Q 021527 194 ELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGAR----ASISGHVQTLLREIKE----S------STKPVAVGFG 258 (311)
Q Consensus 194 ~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~----~~~~~~~~~~l~~vk~----~------~~~Pv~vGfG 258 (311)
.+|. -.-.|. +-.++..+ .|...+ +..-+.++.. .+........+.++.+ . .++||++.+|
T Consensus 189 pVIa-G~V~t~-e~A~~l~~--aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGG 264 (368)
T PRK08649 189 PVIV-GGCVTY-TTALHLMR--TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGG 264 (368)
T ss_pred CEEE-eCCCCH-HHHHHHHH--cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCC
Confidence 7654 233343 33344434 343333 3322111111 1111112222333321 1 1589999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
|++..++.+.+.+|||+|.+||.|....+
T Consensus 265 I~~~~diakAlalGAd~Vm~Gs~fa~t~E 293 (368)
T PRK08649 265 IGTSGDIAKAIACGADAVMLGSPLARAAE 293 (368)
T ss_pred CCCHHHHHHHHHcCCCeecccchhccccc
Confidence 99999999999999999999999998665
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-05 Score=71.55 Aligned_cols=77 Identities=29% Similarity=0.437 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.|.+..+.+.+..-..+|+++..+. +|.. . ..++++++++.+++|+.+|+||++.|+++++++.|||.||+||+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~--~---~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~ 103 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGP--V---NLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA 103 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCC--C---cHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH
Confidence 4556677775544456888887775 3431 1 24678999888899999999999999999999999999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
+.+
T Consensus 104 ~l~ 106 (230)
T TIGR00007 104 AVE 106 (230)
T ss_pred Hhh
Confidence 876
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-05 Score=73.47 Aligned_cols=140 Identities=22% Similarity=0.256 Sum_probs=90.0
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~ 157 (311)
..+-++.|.++|+|+|-|+ .++| -+ +...+.++++|+.. ++||+.- |.. ..
T Consensus 109 ~~er~~~L~~agvD~ivID------~a~g--------------~s-~~~~~~ik~ik~~~~~~~viaG---NV~----T~ 160 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVID------SAHG--------------HS-EHVIDMIKKIKKKFPDVPVIAG---NVV----TY 160 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-------SST--------------TS-HHHHHHHHHHHHHSTTSEEEEE---EE-----SH
T ss_pred HHHHHHHHHHcCCCEEEcc------ccCc--------------cH-HHHHHHHHHHHHhCCCceEEec---ccC----CH
Confidence 4678888999999999997 3334 22 35567899998875 5888874 322 23
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCch
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGH 237 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~ 237 (311)
+-++.+.++|+|+|.+.=-| . +..| .|. +||..-+.-..
T Consensus 161 e~a~~L~~aGad~vkVGiGp----------------G-----siCt--Tr~------------------v~GvG~PQ~tA 199 (352)
T PF00478_consen 161 EGAKDLIDAGADAVKVGIGP----------------G-----SICT--TRE------------------VTGVGVPQLTA 199 (352)
T ss_dssp HHHHHHHHTT-SEEEESSSS----------------S-----TTBH--HHH------------------HHSBSCTHHHH
T ss_pred HHHHHHHHcCCCEEEEeccC----------------C-----cccc--ccc------------------ccccCCcHHHH
Confidence 44566888999998665111 1 1122 221 12211011112
Q ss_pred HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 238 VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
+. .+.+.++..++||+..+||++.-|+.+.+..|||.|-+||.|...-+.
T Consensus 200 v~-~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~Es 249 (352)
T PF00478_consen 200 VY-ECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDES 249 (352)
T ss_dssp HH-HHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTS
T ss_pred HH-HHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCC
Confidence 22 255555556899999999999999999999999999999999987653
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00019 Score=72.11 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=111.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe-------
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT------- 146 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~------- 146 (311)
..++.++++..|+++|++.||++- |-.... +.+ +--++-.+.++.+++. .++++..+.
T Consensus 24 ~t~dkl~ia~~Ld~~Gv~~IE~~g--------gatf~~-~~~-----f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G 89 (448)
T PRK12331 24 TTEEMLPILEKLDNAGYHSLEMWG--------GATFDA-CLR-----FLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLG 89 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC--------Cccchh-hhc-----cCCCCHHHHHHHHHHhCCCCEEEEEeccccccc
Confidence 347789999999999999999961 100000 000 0000113456666654 457766432
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHH----hCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVE----ASE 216 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~----~a~ 216 (311)
|.+ .-.--.++|++.+.++|+|.+-+.|-.- +...+..+.++++|+.....+ +|.++.+...++++ ..-
T Consensus 90 ~~~-~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Ga 168 (448)
T PRK12331 90 YRN-YADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGA 168 (448)
T ss_pred ccc-CchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCC
Confidence 321 0000236799999999999988875432 345667888899997643322 34444455433333 233
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.-||+....| . ..|..+.++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 169 d~I~i~Dt~G---~--l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~-AN~laAieaGad~v 226 (448)
T PRK12331 169 DSICIKDMAG---I--LTPYVAYELVKRIKEAVTVPLEVHTHATSGIAE-MTYLKAIEAGADII 226 (448)
T ss_pred CEEEEcCCCC---C--CCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHH-HHHHHHHHcCCCEE
Confidence 3456655433 3 34667889999999988888877 566654 45666778999976
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-05 Score=72.26 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+..+.+.+..-..+|++...+..|.. ...+.++++.+.+++|+.+|+||+|.|++++++..|||-+++||++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~-----~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRG-----SNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCC-----ccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 45566666655444558888876643321 2247899998888999999999999999999999999999999999
Q ss_pred hch
Q 021527 283 VKL 285 (311)
Q Consensus 283 v~~ 285 (311)
.+-
T Consensus 108 l~~ 110 (241)
T PRK14024 108 LEN 110 (241)
T ss_pred hCC
Confidence 873
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00028 Score=71.61 Aligned_cols=167 Identities=19% Similarity=0.285 Sum_probs=105.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.++-+++++.|.+.|+|.||+|+|.+.| + =++.++.+.+. .+..+..++-
T Consensus 22 s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~---~-------------------d~e~v~~i~~~~~~~~i~a~~r------ 73 (488)
T PRK09389 22 TPEEKLEIARKLDELGVDVIEAGSAITSE---G-------------------EREAIKAVTDEGLNAEICSFAR------ 73 (488)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcCCH---H-------------------HHHHHHHHHhcCCCcEEEeecc------
Confidence 34778999999999999999999998653 1 13455555543 3333444332
Q ss_pred cCHHHHHHHHHHcCCcEEEec----CCC--------h----hhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVP----DVP--------L----EETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviip----Dlp--------~----ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~- 214 (311)
...+.++.+.++|++.+.+. |+- . +...+..+.++++|+.+.+.. ...++.+.+.++.+.
T Consensus 74 -~~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 74 -AVKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAG 152 (488)
T ss_pred -cCHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 23667889999999987774 221 1 224556678889998655433 233445665444443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...-+++....|. ..|..+.++++.+++..++|+-+ .+|...+ +....+++||+.|
T Consensus 153 ~~~Ga~~i~l~DTvG~-----~~P~~~~~lv~~l~~~~~v~l~~H~HND~GlAvA-NalaAv~aGa~~V 215 (488)
T PRK09389 153 IEAGADRICFCDTVGI-----LTPEKTYELFKRLSELVKGPVSIHCHNDFGLAVA-NTLAALAAGADQV 215 (488)
T ss_pred HhCCCCEEEEecCCCC-----cCHHHHHHHHHHHHhhcCCeEEEEecCCccHHHH-HHHHHHHcCCCEE
Confidence 2234566654443 35777889999999877777644 3355443 4455567999876
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0017 Score=61.73 Aligned_cols=202 Identities=17% Similarity=0.250 Sum_probs=123.7
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAILS 129 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~~~ 129 (311)
..|.++.++++. ++.||-=|. --++..+++|.+.+-+. |--+..++ ..+ . .-.++++.++
T Consensus 7 ~~lr~ll~~~~~----l~~p~~~Da----~SAri~e~~Gf~ai~~S---------g~~~a~~~-lG~PD~g~l~~~e~~~ 68 (292)
T PRK11320 7 ARFRAALAAEKP----LQIVGTINA----YHALLAERAGFKAIYLS---------GGGVAAAS-LGLPDLGITTLDDVLI 68 (292)
T ss_pred HHHHHHHcCCCc----EEecCCCCH----HHHHHHHHcCCCEEEeC---------HHHHHhHh-cCCCCCCCCCHHHHHH
Confidence 457777666553 234443332 34467788999999884 33232111 011 1 1258899999
Q ss_pred HHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecC---------------CChhhHHHHHHHHHH-
Q 021527 130 MLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPD---------------VPLEETESLQKEAMK- 190 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipD---------------lp~ee~~~~~~~~~~- 190 (311)
.+++|...+++||++. ||-|+. .+.+.++.+.++|+.|+.+=| .|.||...-.+.+++
T Consensus 69 ~~~~I~~~~~iPviaD~d~GyG~~~---~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a 145 (292)
T PRK11320 69 DVRRITDACDLPLLVDIDTGFGGAF---NIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDA 145 (292)
T ss_pred HHHHHHhccCCCEEEECCCCCCCHH---HHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHh
Confidence 9999999999999998 576644 345778999999999999977 244554332233322
Q ss_pred -cCCCeEEEeCCCC--------hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE---eeC
Q 021527 191 -NKIELVLFTTPTT--------PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV---GFG 258 (311)
Q Consensus 191 -~gi~~I~lisp~t--------~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v---GfG 258 (311)
.+.+.++..=... ..+|.+.+.+..-..||+.. .+ + .+.++++.+..+.|+.+ .+|
T Consensus 146 ~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~---~~--------~-~~~i~~~~~~~~~Pl~~n~~~~~ 213 (292)
T PRK11320 146 RTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEA---MT--------E-LEMYRRFADAVKVPILANITEFG 213 (292)
T ss_pred ccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecC---CC--------C-HHHHHHHHHhcCCCEEEEeccCC
Confidence 2555444321111 12666666665555666542 11 1 35577777767788843 334
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
-+-.-.++++.++|..-|+.|+...+..
T Consensus 214 ~~p~~s~~~L~~lGv~~v~~~~~~~~aa 241 (292)
T PRK11320 214 ATPLFTTEELASAGVAMVLYPLSAFRAM 241 (292)
T ss_pred CCCCCCHHHHHHcCCcEEEEChHHHHHH
Confidence 3211247788889999999998876644
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0027 Score=60.20 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=132.3
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSML 131 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i 131 (311)
+.++..++. +-++..|= -.|++...-++++.++.+..+|----|-.-.+. | . ++..++
T Consensus 3 ~~L~~A~~~-~yaV~AfN---~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~---------------~--~-~~~~~~ 60 (283)
T PRK08185 3 ELLKVAKEH-QFAVGAFN---VADSCFLRAVVEEAEANNAPAIIAIHPNELDFL---------------G--D-NFFAYV 60 (283)
T ss_pred HHHHHHHHc-CceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhc---------------c--H-HHHHHH
Confidence 455554433 45565555 457889999999999999998765433211111 1 1 245677
Q ss_pred HHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE---EeCC-
Q 021527 132 KEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL---FTTP- 201 (311)
Q Consensus 132 ~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~---lisp- 201 (311)
+.+.++.++||.+-. + +..-.+.++.+.+.|.+.|.+ .++|+|| ..++++.++.+|+.+=. .+.-
T Consensus 61 ~~~a~~~~vPV~lHL--D---Hg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~ 135 (283)
T PRK08185 61 RERAKRSPVPFVIHL--D---HGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNT 135 (283)
T ss_pred HHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCc
Confidence 777788899998853 1 222346788999999999988 5899887 56678888888874310 1110
Q ss_pred ------------CChHHHHHHHHHhCCceEEEEecCCccCC------CCCCCchHHHHHHHHhhcCCCcEEE--eeCCCC
Q 021527 202 ------------TTPTDRMKAIVEASEGFVYLVSSIGVTGA------RASISGHVQTLLREIKESSTKPVAV--GFGISK 261 (311)
Q Consensus 202 ------------~t~~eri~~i~~~a~gfiY~vs~~G~TG~------~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst 261 (311)
-|+++..++..+ ..|..|+--..|+.+. +..++ .+.++++++.+++|++. |.|+.
T Consensus 136 e~~~~~~~~~~~~t~peea~~f~~-~TgvD~LAvaiGt~HG~y~~~~kp~L~---~e~l~~I~~~~~iPLVlHGgsg~~- 210 (283)
T PRK08185 136 GTSIEGGVSEIIYTDPEQAEDFVS-RTGVDTLAVAIGTAHGIYPKDKKPELQ---MDLLKEINERVDIPLVLHGGSANP- 210 (283)
T ss_pred ccccccccccccCCCHHHHHHHHH-hhCCCEEEeccCcccCCcCCCCCCCcC---HHHHHHHHHhhCCCEEEECCCCCC-
Confidence 123344444433 2366677433343322 22233 57899999888999877 44554
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=|=|+|.+....
T Consensus 211 ~e~~~~ai~~GI~KiNi~T~l~~a~ 235 (283)
T PRK08185 211 DAEIAESVQLGVGKINISSDMKYAF 235 (283)
T ss_pred HHHHHHHHHCCCeEEEeChHHHHHH
Confidence 6899999999999999999886644
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=70.91 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHCCCCEEEE--cC---------CCCCCCCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC-cE
Q 021527 78 TTAEALKLLDSCGSDIIEL--GV---------PYSDPLAD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC-PI 142 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IEl--G~---------PfsDP~aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i-Pi 142 (311)
.+.+.++.+.++|.|+||| +- |.++.-.| |. +.+- .+=.+++++.||+.+.. ||
T Consensus 153 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGs-lenR----------~rf~~eii~air~~vg~d~v 221 (338)
T cd02933 153 DFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGS-IENR----------ARFLLEVVDAVAEAIGADRV 221 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCc-HHHh----------hhHHHHHHHHHHHHhCCCce
Confidence 5788899999999999999 43 44444444 32 2211 22346778888876543 55
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-. | .+++ ..+. ..+...||..++.+.+.+.|++.+-+....+....
T Consensus 222 ~vRi--s------~~~~--------~~~~-~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~--------------- 269 (338)
T cd02933 222 GIRL--S------PFGT--------FNDM-GDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP--------------- 269 (338)
T ss_pred EEEE--C------cccc--------CCCC-CCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc---------------
Confidence 4421 1 1111 1111 12345677777888888888877655332211000
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.....++.+++|+.+++||++.+||+ ++++.++++.| +|.|-+|-+++.
T Consensus 270 ------------~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 270 ------------EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred ------------cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 01123678889999999999999997 99999999876 999999988775
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=73.65 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+.+.++.+.+..-..+|++...+. ++. ....++++++++.+++||.+|+||++.+++++++..|||+|+|||+
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~-----~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~ 105 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGR-----TTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTA 105 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccC-----hhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 4456666665543345666654432 221 1235789999998999999999999999999999999999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
+.+
T Consensus 106 ~~~ 108 (254)
T TIGR00735 106 AVK 108 (254)
T ss_pred Hhh
Confidence 876
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.3e-05 Score=73.93 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCcEEEecCCC---hhhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCC--
Q 021527 158 NFMSTVRDIGIRGLVVPDVP---LEETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA-- 230 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp---~ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~-- 230 (311)
+.++.+.++|+|-|.+ |.. .+...++.+.+++. ++.++ .-.-.| .+..+...+ .|+.++....| .|+
T Consensus 156 ~~v~~lv~aGvDvI~i-D~a~g~~~~~~~~v~~ik~~~p~~~vi-~g~V~T-~e~a~~l~~--aGaD~I~vG~g-~Gs~c 229 (404)
T PRK06843 156 ERVEELVKAHVDILVI-DSAHGHSTRIIELVKKIKTKYPNLDLI-AGNIVT-KEAALDLIS--VGADCLKVGIG-PGSIC 229 (404)
T ss_pred HHHHHHHhcCCCEEEE-ECCCCCChhHHHHHHHHHhhCCCCcEE-EEecCC-HHHHHHHHH--cCCCEEEECCC-CCcCC
Confidence 6778899999999765 332 23455666666664 33322 212334 344444444 35544432211 111
Q ss_pred --C--CCC-CchH--HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 231 --R--ASI-SGHV--QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 231 --~--~~~-~~~~--~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+ .+. .+.+ ...+.++.+..++||++.+||++++++.+.+.+|||+|.|||+|...-+
T Consensus 230 ~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~E 293 (404)
T PRK06843 230 TTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKE 293 (404)
T ss_pred cceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeec
Confidence 1 121 1222 2234555445689999999999999999999999999999999998553
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00012 Score=70.42 Aligned_cols=129 Identities=15% Similarity=0.191 Sum_probs=87.1
Q ss_pred cCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH---HHHHHHHH
Q 021527 137 QMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT---DRMKAIVE 213 (311)
Q Consensus 137 ~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~---eri~~i~~ 213 (311)
.++.|+++-.- ....-+++.+.+.+.|.-+++.= +++|+...+.+..+..++ ...++..+++ +|+..+.+
T Consensus 32 ~l~~P~~inAM----~t~in~~LA~~a~~~G~~~i~hK-~~~E~~~sfvrk~k~~~L--~v~~SvG~t~e~~~r~~~lv~ 104 (321)
T TIGR01306 32 KFKLPVVPANM----QTIIDEKLAEQLAENGYFYIMHR-FDEESRIPFIKDMQERGL--FASISVGVKACEYEFVTQLAE 104 (321)
T ss_pred EecCcEEeecc----chhhhHHHHHHHHHcCCEEEEec-CCHHHHHHHHHhcccccc--EEEEEcCCCHHHHHHHHHHHh
Confidence 47789888533 22222567778899998886544 778886666666655555 3333333333 56666655
Q ss_pred hCCceEEEE--ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 214 ASEGFVYLV--SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 214 ~a~gfiY~v--s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
..-...|++ +..| -...+.+.++++|+.++.|.++.++|-|+++++.+.++|||++.||
T Consensus 105 a~~~~d~i~~D~ahg-------~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 105 EALTPEYITIDIAHG-------HSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred cCCCCCEEEEeCccC-------chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 432123432 3222 2345778899999988888778888999999999999999999998
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00024 Score=64.21 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=102.4
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+-+..++.++..+.++.+.+. ++++++|.|+-+ ..| .+.++++++.. .++++..-.
T Consensus 3 vAlD~~~~~~a~~~~~~~~~~-v~~iKig~~l~~----------------~~G------~~~v~~l~~~~-~~v~lD~K~ 58 (213)
T TIGR01740 3 VALDVTTKDEALDLADSLGPE-IEVIKVGIDLLL----------------DGG------DKIIDELAKLN-KLIFLDLKF 58 (213)
T ss_pred EECCCCCHHHHHHHHHhcCCc-CcEEEECHHHHH----------------hcC------HHHHHHHHHcC-CCEEEEEee
Confidence 345678888777777766443 899999977733 122 24677777653 366665433
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEe---CCCCh------HHHHHHHHHhCCce
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFT---TPTTP------TDRMKAIVEASEGF 218 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~li---sp~t~------~eri~~i~~~a~gf 218 (311)
..+-.+ ..++++.+.+.|+|.+.++-..-.+ ...+.+.++++|..++.++ +|... .+.+.+++..+..
T Consensus 59 ~Dig~t-~~~~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~- 136 (213)
T TIGR01740 59 ADIPNT-VKLQYESKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKA- 136 (213)
T ss_pred cchHHH-HHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhh-
Confidence 333211 2456777888999999997554333 5567777777774333222 22211 1222222232221
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCH--HH--------HHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP--EH--------VQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~--e~--------v~~v~~~GADGvIVGSaiv~ 284 (311)
.|..|.- .. .+.++++|+..+--+++--||+-. +. ++++.+.|||-+|+|++|.+
T Consensus 137 ------~g~~g~v--~~---~~~~~~ir~~~~~~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~ 201 (213)
T TIGR01740 137 ------FGLDGPV--CS---AEEAKEIRKFTGDFLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYA 201 (213)
T ss_pred ------cCCeEEE--eC---HHHHHHHHHhcCCceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcC
Confidence 1111111 01 134666666553235576677522 12 27788999999999999997
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein. |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0002 Score=73.28 Aligned_cols=174 Identities=18% Similarity=0.218 Sum_probs=108.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-c-CCCcEEEEecCcch-
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-Q-MSCPIALFTYYNPI- 151 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~-~~iPiilm~Y~n~i- 151 (311)
+.+.-+++++.|.+.|+|.||+|+|+..|- -++.++++.+ . .+..+..+.-...-
T Consensus 25 s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~----------------------d~~~~~~i~~~~l~~~~i~~~~~~~~~~ 82 (524)
T PRK12344 25 SVEDKLRIARKLDELGVDYIEGGWPGSNPK----------------------DTEFFKRAKELKLKHAKLAAFGSTRRAG 82 (524)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCcCChh----------------------HHHHHHHHHHhCCCCcEEEEEeeccccC
Confidence 357889999999999999999999986651 1334555543 2 24556655422110
Q ss_pred hccCHHHHHHHHHHcCCcEEEec----CC--------C----hhhHHHHHHHHHHcCCCeEEEe-----CCCChHHHHHH
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVP----DV--------P----LEETESLQKEAMKNKIELVLFT-----TPTTPTDRMKA 210 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviip----Dl--------p----~ee~~~~~~~~~~~gi~~I~li-----sp~t~~eri~~ 210 (311)
.....++-++.+.++|++.+.+. |+ . ++...+..+.++++|++..+.. ...++.+.+.+
T Consensus 83 i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~ 162 (524)
T PRK12344 83 VSAEEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALA 162 (524)
T ss_pred CCcccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHH
Confidence 00112456677889999987774 21 1 1234567778899998754322 12344555544
Q ss_pred HHHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 211 IVEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 211 i~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+++. ....+++....| . ..|..+.++++.+++.+++|+-+ .+|...++ ....+++|||.|
T Consensus 163 ~~~~~~~~Gad~i~l~DTvG---~--~~P~~v~~li~~l~~~~~v~i~~H~HND~GlA~AN-slaAi~aGa~~V 230 (524)
T PRK12344 163 TLKAAAEAGADWVVLCDTNG---G--TLPHEVAEIVAEVRAAPGVPLGIHAHNDSGCAVAN-SLAAVEAGARQV 230 (524)
T ss_pred HHHHHHhCCCCeEEEccCCC---C--cCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHH-HHHHHHhCCCEE
Confidence 4432 233466655444 3 35777889999999988777766 45665544 445567899876
|
|
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00044 Score=69.13 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=36.6
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
++||++.+||.|++++..++.+|||||.+||.+.-..+.
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA 262 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence 689999999999999999999999999999999998764
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.5e-05 Score=75.59 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCcEEEecCCChhh---HHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEE-Eec-CC---c
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEE---TESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYL-VSS-IG---V 227 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee---~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~-~G---~ 227 (311)
+-++.+.++|+|.+ +.|.+... ..++.+.+++. ++.++ .-.-.|.++ .+...+ .|+..+ ++. .| +
T Consensus 251 ~r~~~l~~ag~d~i-~iD~~~g~~~~~~~~i~~ik~~~p~~~vi-~g~v~t~e~-a~~a~~--aGaD~i~vg~g~G~~~~ 325 (505)
T PLN02274 251 ERLEHLVKAGVDVV-VLDSSQGDSIYQLEMIKYIKKTYPELDVI-GGNVVTMYQ-AQNLIQ--AGVDGLRVGMGSGSICT 325 (505)
T ss_pred HHHHHHHHcCCCEE-EEeCCCCCcHHHHHHHHHHHHhCCCCcEE-EecCCCHHH-HHHHHH--cCcCEEEECCCCCcccc
Confidence 45677899999996 44766543 23466666664 33322 223445444 333334 444444 221 11 1
Q ss_pred c----CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 228 T----GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 228 T----G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
| |..... ......+.++.+..++||++.+||+++.++.+++.+|||+|.+||+|...-+.
T Consensus 326 t~~~~~~g~~~-~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Es 389 (505)
T PLN02274 326 TQEVCAVGRGQ-ATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEA 389 (505)
T ss_pred CccccccCCCc-ccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccC
Confidence 2 110011 12234577777777899999999999999999999999999999999987753
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00052 Score=69.21 Aligned_cols=183 Identities=17% Similarity=0.131 Sum_probs=111.1
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC-cch
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY-NPI 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~-n~i 151 (311)
-..++.+++++.|+++|++.||++.+- ... ++.+-+ -++-.+.++++++. .++++..+.-. |.+
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~gga--------tfd-~~~~Fl-----~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~ 87 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGA--------TFD-VCVRFL-----NENPWERLKEIRKRLKNTKIQMLLRGQNLV 87 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCc--------cch-hhhccc-----CCCHHHHHHHHHHhCCCCEEEEEecccccc
Confidence 345778999999999999999997221 100 000100 01124566666654 45666553211 111
Q ss_pred -----hccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHHh----CC
Q 021527 152 -----LKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVEA----SE 216 (311)
Q Consensus 152 -----~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~~----a~ 216 (311)
-.-=++.|++.+.++|+|.+-+.|-.- +......+.++++|......+ +|..+.+...++++. .-
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Ga 167 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGV 167 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCC
Confidence 000135799999999999988875432 345667788899998654322 354445554444332 23
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.-||+-...| . ..|..+.++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 168 d~I~i~Dt~G---~--l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~-AN~laAieaGad~v 225 (467)
T PRK14041 168 DSICIKDMAG---L--LTPKRAYELVKALKKKFGVPVEVHSHCTTGLAS-LAYLAAVEAGADMF 225 (467)
T ss_pred CEEEECCccC---C--cCHHHHHHHHHHHHHhcCCceEEEecCCCCcHH-HHHHHHHHhCCCEE
Confidence 3456555444 2 34677899999999988888866 345543 45566678999876
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00029 Score=68.00 Aligned_cols=162 Identities=17% Similarity=0.253 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHCCCCEEEE--cC---------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcE
Q 021527 78 TTAEALKLLDSCGSDIIEL--GV---------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPI 142 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IEl--G~---------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPi 142 (311)
.+.+.++.+.++|.|.||| |- |.++---| |-.+.+ +.+-.++++++||+.+ +.||
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslen----------R~rf~~EiI~aIR~avG~d~~v 219 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLEN----------RARLLLEIYDAIRAAVGPGFPV 219 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHH----------HHHHHHHHHHHHHHHcCCCCeE
Confidence 5788889999999999999 32 43221111 111221 2234467888888776 4666
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-. | ..++.+ . | +..+|..++.+.+.+.|++.+-+.. .+..+. . +..
T Consensus 220 ~vri--s------~~~~~~----~---g-----~~~eea~~ia~~Le~~Gvd~iev~~-g~~~~~---------~--~~~ 267 (338)
T cd04733 220 GIKL--N------SADFQR----G---G-----FTEEDALEVVEALEEAGVDLVELSG-GTYESP---------A--MAG 267 (338)
T ss_pred EEEE--c------HHHcCC----C---C-----CCHHHHHHHHHHHHHcCCCEEEecC-CCCCCc---------c--ccc
Confidence 6632 2 111111 1 1 2456777888888888887765432 211000 0 000
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.....+... +.-..+..+++|+.+++||+++++|++++++.++++.| +|.|-+|-.++.
T Consensus 268 ~~~~~~~~~---~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 268 AKKESTIAR---EAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred cccCCcccc---chhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 000000000 11124677889999999999999999999999999876 899999977765
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00044 Score=66.48 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHhhcc-CCCcEEEEe--cC-cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE
Q 021527 123 NFNAILSMLKEVVPQ-MSCPIALFT--YY-NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF 198 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~-~~iPiilm~--Y~-n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l 198 (311)
+.+++-+.++++|+. ++.|+.+.. +. |+. .++.++.+.+.++.-+++.--.+++ .+.+++.|+..+..
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~----~~~~l~vi~e~~v~~V~~~~G~P~~----~~~lk~~Gi~v~~~ 109 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDTEL----RAAQLAVVRAIKPTFALIAGGRPDQ----ARALEAIGISTYLH 109 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeccCCCcc----hHHHHHHHHhcCCcEEEEcCCChHH----HHHHHHCCCEEEEE
Confidence 345555678888875 688977642 21 211 3567888899999998886322332 36678899987765
Q ss_pred eCCCChHHHHHHHHHh-CCceEEEEecC-CccCCCCCCCchHHHHHHHHhh------cCCCcEEEeeCCCCHHHHHHHHH
Q 021527 199 TTPTTPTDRMKAIVEA-SEGFVYLVSSI-GVTGARASISGHVQTLLREIKE------SSTKPVAVGFGISKPEHVQQVAG 270 (311)
Q Consensus 199 isp~t~~eri~~i~~~-a~gfiY~vs~~-G~TG~~~~~~~~~~~~l~~vk~------~~~~Pv~vGfGIst~e~v~~v~~ 270 (311)
++ +..+ .++..+. ++.+|.-..-. |.+|..+.+. -+.+.+..++. ..++||++.+||.+...+..++.
T Consensus 110 v~--s~~~-A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~-L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaala 185 (320)
T cd04743 110 VP--SPGL-LKQFLENGARKFIFEGRECGGHVGPRSSFV-LWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSA 185 (320)
T ss_pred eC--CHHH-HHHHHHcCCCEEEEecCcCcCCCCCCCchh-hHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHH
Confidence 42 3222 2333333 33444333222 2344322221 12233333432 23799999999999999999999
Q ss_pred cCC--------cEEEEhhHhhchhh
Q 021527 271 WGA--------DGVIVGSAMVKLLG 287 (311)
Q Consensus 271 ~GA--------DGvIVGSaiv~~~~ 287 (311)
.|| +||.+||.|+-.-+
T Consensus 186 LGA~~~~~Ga~~GV~mGTrFl~t~E 210 (320)
T cd04743 186 LAAPLAERGAKVGVLMGTAYLFTEE 210 (320)
T ss_pred cCCcccccccccEEEEccHHhcchh
Confidence 988 89999999998654
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00035 Score=72.33 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=111.6
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEc--------CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEE
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELG--------VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIAL 144 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG--------~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiil 144 (311)
-..++..+++..|+++|++.||+| ++|..+- -.+.++.+++. .++++..
T Consensus 18 ~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~----------------------~~e~l~~l~~~~~~~~l~~ 75 (582)
T TIGR01108 18 MRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNED----------------------PWERLRELKKALPNTPLQM 75 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCC----------------------HHHHHHHHHHhCCCCEEEE
Confidence 345778999999999999999997 4554331 13456666653 4677766
Q ss_pred Eec-Ccchhc--c---CHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHH
Q 021527 145 FTY-YNPILK--R---GVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIV 212 (311)
Q Consensus 145 m~Y-~n~i~~--~---g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~ 212 (311)
+.- -|.+-- | -.+.|++.+.++|+|.+-+.|-.. +......+.++++|+.....+ +|..+.+...+++
T Consensus 76 L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~ 155 (582)
T TIGR01108 76 LLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLA 155 (582)
T ss_pred EEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHH
Confidence 531 121110 0 136799999999999988865432 456667788899998655432 3433445443333
Q ss_pred H----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 213 E----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 213 ~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+ ..-..+++-...| . ..|..+.++++.+|+..++|+-+ .+|... .+.-...++|||.|
T Consensus 156 ~~~~~~Gad~I~i~Dt~G---~--~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~-An~laAveaGa~~v 221 (582)
T TIGR01108 156 EELLEMGVDSICIKDMAG---I--LTPKAAYELVSALKKRFGLPVHLHSHATTGMAE-MALLKAIEAGADGI 221 (582)
T ss_pred HHHHHcCCCEEEECCCCC---C--cCHHHHHHHHHHHHHhCCCceEEEecCCCCcHH-HHHHHHHHhCCCEE
Confidence 3 2233455544333 3 34677899999999988888765 445543 44556678999876
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00073 Score=64.05 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=104.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.++-+++++.|.++|+|.||+| -|.+|..-... . +-.+.++.+++..+..+..+. .|
T Consensus 24 s~e~k~~ia~~L~~~Gv~~IEvg-sf~~p~~~p~~-~--------------d~~e~~~~l~~~~~~~~~~l~-~~----- 81 (287)
T PRK05692 24 PTADKIALIDRLSAAGLSYIEVA-SFVSPKWVPQM-A--------------DAAEVMAGIQRRPGVTYAALT-PN----- 81 (287)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeC-CCcCccccccc-c--------------cHHHHHHhhhccCCCeEEEEe-cC-----
Confidence 34778999999999999999999 34444221100 0 012344455433344444332 23
Q ss_pred CHHHHHHHHHHcCCcEEEecCC------------Ch----hhHHHHHHHHHHcCCCeEEEe-----CC---CChHHHHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDV------------PL----EETESLQKEAMKNKIELVLFT-----TP---TTPTDRMKA 210 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDl------------p~----ee~~~~~~~~~~~gi~~I~li-----sp---~t~~eri~~ 210 (311)
.+-++.+.++|+|.+.+..- .. ++..+..+.++++|+.....+ .| .++.+.+.+
T Consensus 82 --~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~ 159 (287)
T PRK05692 82 --LKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVAD 159 (287)
T ss_pred --HHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHH
Confidence 45668889999998877421 11 235567888899998765322 12 224455444
Q ss_pred HHHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 211 IVEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 211 i~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+++. .-.-||+.... |. ..|.++.++++.+|+..+ +|+-+ .+|... .+.-..+++|+|.+
T Consensus 160 ~~~~~~~~G~d~i~l~DT~---G~--~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~-AN~laA~~aG~~~i 228 (287)
T PRK05692 160 VAERLFALGCYEISLGDTI---GV--GTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQAL-ANIYASLEEGITVF 228 (287)
T ss_pred HHHHHHHcCCcEEEecccc---Cc--cCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHH-HHHHHHHHhCCCEE
Confidence 4443 23346665543 33 346778999999998764 77765 445543 45566678999876
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00081 Score=61.65 Aligned_cols=197 Identities=16% Similarity=0.206 Sum_probs=102.7
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP 150 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~ 150 (311)
+..+++++.++.++.+. ..++++++|.|+ +. ..| ++.++++++. +.++++-.-+.+
T Consensus 9 lD~~~~~~~l~~~~~~~-~~~~~ikvg~~~--------f~--------~~G------~~~i~~l~~~-~~~i~~D~Kl~D 64 (230)
T PRK00230 9 LDFPSKEEALAFLDQLD-PAVLFVKVGMEL--------FT--------AGG------PQFVRELKQR-GFKVFLDLKLHD 64 (230)
T ss_pred cCCCCHHHHHHHHHhcC-CcccEEEEcHHH--------HH--------hcC------HHHHHHHHhc-CCCEEEEeehhh
Confidence 34556776666666543 336788888433 21 123 3567777765 456776655533
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcC-CCeEE--EeCCCChHHHHHHHHHhCCc---eEEEEe
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNK-IELVL--FTTPTTPTDRMKAIVEASEG---FVYLVS 223 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~g-i~~I~--lisp~t~~eri~~i~~~a~g---fiY~vs 223 (311)
+-. -.++.++.+.+.|+|.+.++-..-.+ .....+..++++ ...+. +++..+ .+++.+. ....+ +++-.+
T Consensus 65 i~~-t~~~~i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~-~~~l~~~-~~~~~~~~~v~~~a 141 (230)
T PRK00230 65 IPN-TVAKAVRALAKLGVDMVNVHASGGPRMMKAAREALEPKSRPLLIAVTVLTSMD-EEDLAEL-GINLSLEEQVLRLA 141 (230)
T ss_pred ccc-cHHHHHHHHHHcCCCEEEEcccCCHHHHHHHHHHhhccCCCeEEEEEECCCCC-HHHHHhC-cCCCCHHHHHHHHH
Confidence 322 24567888899999999998443323 333444444331 12222 223222 2333210 00000 000000
Q ss_pred ----cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHH-----------HHHHHHHcCCcEEEEhhHhhchhh
Q 021527 224 ----SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPE-----------HVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 224 ----~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e-----------~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
..|.-|-.. ++ ..++++|+.. +..+.+-.||+ ++ ++.++.+.|||++|||.++.+.
T Consensus 142 ~~a~~~g~dgvv~--~~---~~~~~ir~~~~~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a-- 213 (230)
T PRK00230 142 KLAQEAGLDGVVC--SA---QEAAAIREATGPDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQA-- 213 (230)
T ss_pred HHHHHcCCeEEEe--Ch---HHHHHHHhhcCCceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCC--
Confidence 011111100 11 1245666654 34556767886 44 6788888999999999999983
Q ss_pred hcCCchhHHHHHHHHHHHHH
Q 021527 288 EAQSPEEGLKELEKFAKSLK 307 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~ 307 (311)
.+| .+.++++.+++.
T Consensus 214 --~dP---~~~a~~i~~~i~ 228 (230)
T PRK00230 214 --ADP---AAAYEAILAEIA 228 (230)
T ss_pred --CCH---HHHHHHHHHHhh
Confidence 233 344555555543
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0047 Score=58.84 Aligned_cols=202 Identities=16% Similarity=0.202 Sum_probs=121.7
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAILS 129 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~~~ 129 (311)
..|.++.++++.. +.||==| .--++.++++|.+.+-+. |--+..++ ..+ . .-.++++.++
T Consensus 6 ~~~r~l~~~~~~l----~~p~v~D----a~SArl~e~aGf~ai~~s---------g~~~~as~-lG~pD~g~l~~~e~~~ 67 (294)
T TIGR02319 6 RTFRELMNAPEIL----VVPSAYD----ALSAKVIQQAGFPAVHMT---------GSGTSASM-LGLPDLGFTSVSEQAI 67 (294)
T ss_pred HHHHHHhcCCCcE----EeecCcC----HHHHHHHHHcCCCEEEec---------HHHHHHHH-cCCCCcCCCCHHHHHH
Confidence 4566666555432 3344333 234566788899999773 32222111 111 1 1258889999
Q ss_pred HHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecC---------------CChhhHHH-HHHHHHH
Q 021527 130 MLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPD---------------VPLEETES-LQKEAMK 190 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipD---------------lp~ee~~~-~~~~~~~ 190 (311)
.+++|...+++||++. ||-|+.. +.+.++.+.++|+.|+.+=| +|.||..+ ++.....
T Consensus 68 ~~~~I~~~~~lPv~aD~dtGyG~~~~---v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A 144 (294)
T TIGR02319 68 NAKNIVLAVDVPVIMDADAGYGNAMS---VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEA 144 (294)
T ss_pred HHHHHHhccCCCEEEECCCCCCCcHH---HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHh
Confidence 9999999999999998 5777553 35678999999999999976 24444333 3333222
Q ss_pred -cCCCeEEEeC-C----CC---hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcE---EEeeC
Q 021527 191 -NKIELVLFTT-P----TT---PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPV---AVGFG 258 (311)
Q Consensus 191 -~gi~~I~lis-p----~t---~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv---~vGfG 258 (311)
.+.+.++..= . .. ..+|.+.+.+..-..+|+.+ . + + .+.++++.+..+.|+ ++.+|
T Consensus 145 ~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~---~---~-----~-~~ei~~~~~~~~~P~~~nv~~~~ 212 (294)
T TIGR02319 145 REDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEA---M---L-----D-VEEMKRVRDEIDAPLLANMVEGG 212 (294)
T ss_pred ccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC---C---C-----C-HHHHHHHHHhcCCCeeEEEEecC
Confidence 2334443321 1 01 12666667665555666532 1 1 1 245777777777776 33333
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
-.-.-.++++.++|.+-|+.|..+.+..
T Consensus 213 ~~p~~s~~eL~~lG~~~v~~~~~~~~aa 240 (294)
T TIGR02319 213 KTPWLTTKELESIGYNLAIYPLSGWMAA 240 (294)
T ss_pred CCCCCCHHHHHHcCCcEEEEcHHHHHHH
Confidence 3222457888889999999998877644
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0018 Score=61.38 Aligned_cols=200 Identities=18% Similarity=0.256 Sum_probs=121.6
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAILS 129 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~~~ 129 (311)
..|.++.++++. ++.||-=|. --++.++++|.+.+-++ |--+..+ ..+ . .-.++++.++
T Consensus 3 ~~lr~l~~~~~~----l~~p~~~Da----~SAri~e~aGf~Ai~~s---------g~~~a~~--lG~pD~g~lt~~e~~~ 63 (285)
T TIGR02317 3 KAFRAALAKEDI----LQIPGAINA----MAALLAERAGFEAIYLS---------GAAVAAS--LGLPDLGITTLDEVAE 63 (285)
T ss_pred HHHHHHHhCCCc----EEeCCCCCH----HHHHHHHHcCCCEEEEc---------HHHHHHh--CCCCCCCCCCHHHHHH
Confidence 356666666553 234444332 33456678899999885 3222210 001 0 1258889999
Q ss_pred HHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC---------------ChhhHHHHHHHHHH-
Q 021527 130 MLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV---------------PLEETESLQKEAMK- 190 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl---------------p~ee~~~~~~~~~~- 190 (311)
.+++|...+++||++. ||-|+. .+.+.++.+.++|+.|+.+=|- |.||...-.+.+++
T Consensus 64 ~~~~I~~~~~iPviaD~d~GyG~~~---~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a 140 (285)
T TIGR02317 64 DARRITRVTDLPLLVDADTGFGEAF---NVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDA 140 (285)
T ss_pred HHHHHHhccCCCEEEECCCCCCCHH---HHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHh
Confidence 9999999999999998 576633 3456788999999999999772 44553332233332
Q ss_pred -cCCCeEEEeCCC--------ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE---eeC
Q 021527 191 -NKIELVLFTTPT--------TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV---GFG 258 (311)
Q Consensus 191 -~gi~~I~lisp~--------t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v---GfG 258 (311)
.+.+.++..=-. ...+|.+.+.+..-..+|+.. .+ ..+.++++.+..+.|+++ .+|
T Consensus 141 ~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g---~~---------~~e~i~~~~~~i~~Pl~~n~~~~~ 208 (285)
T TIGR02317 141 KRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEA---LT---------SLEEFRQFAKAVKVPLLANMTEFG 208 (285)
T ss_pred ccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCC---CC---------CHHHHHHHHHhcCCCEEEEeccCC
Confidence 244444332101 112566666665555666532 11 134577777777788843 334
Q ss_pred CCCH-HHHHHHHHcCCcEEEEhhHhhchh
Q 021527 259 ISKP-EHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 259 Ist~-e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
- +| -+++++.++|..-|+.|..+.+..
T Consensus 209 ~-~p~~s~~eL~~lGv~~v~~~~~~~~aa 236 (285)
T TIGR02317 209 K-TPLFTADELREAGYKMVIYPVTAFRAM 236 (285)
T ss_pred C-CCCCCHHHHHHcCCcEEEEchHHHHHH
Confidence 3 23 357788889999999998887654
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0011 Score=64.45 Aligned_cols=171 Identities=17% Similarity=0.228 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.++-+++++.|.++|+|.||+|.|- .|-+ .|-.. ..+++++.++++. ...++.++ .|
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~-vPqma-----------d~~ev~~~i~~~~-~~~~~~l~---~n------ 123 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFV-SPKW-VPQLA-----------DAKDVMAAVRNLE-GARFPVLT---PN------ 123 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCc-Cccc-ccccc-----------cHHHHHHHHHhcc-CCceeEEc---CC------
Confidence 4778999999999999999999554 4421 11110 1122233333321 12223222 13
Q ss_pred HHHHHHHHHHcCCcEEEec------------CCChhh----HHHHHHHHHHcCCCeEEEeC-----C---CChHHHHHHH
Q 021527 156 VDNFMSTVRDIGIRGLVVP------------DVPLEE----TESLQKEAMKNKIELVLFTT-----P---TTPTDRMKAI 211 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip------------Dlp~ee----~~~~~~~~~~~gi~~I~lis-----p---~t~~eri~~i 211 (311)
.+-++.+.++|++.+.+. ....+| ..+..+.++++|+.+...++ | .++.+++.++
T Consensus 124 -~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~ 202 (347)
T PLN02746 124 -LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYV 202 (347)
T ss_pred -HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHH
Confidence 578888999999987764 233344 34678888999998743221 1 2334554444
Q ss_pred HHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCC-cEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 212 VEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 212 ~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~-Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++. .-.-|++.. ++|. ..|..+.++++.+|+.++. |+-+ .+|... .+.-..+++|||.+
T Consensus 203 ~~~~~~~Gad~I~l~D---T~G~--a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~-AN~lAA~~aGa~~v 270 (347)
T PLN02746 203 AKELYDMGCYEISLGD---TIGV--GTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQAL-ANILVSLQMGISTV 270 (347)
T ss_pred HHHHHHcCCCEEEecC---CcCC--cCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHH-HHHHHHHHhCCCEE
Confidence 443 223455544 4444 3467789999999987653 5544 344443 45666778999876
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0002 Score=70.44 Aligned_cols=174 Identities=16% Similarity=0.199 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCC-hHHHHHH-----HHHHHHcCCCH----HHHHHHHHHhhccC--CCcEEEE
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLAD-GPVIQAA-----ATRSLARGTNF----NAILSMLKEVVPQM--SCPIALF 145 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aD-Gp~Iq~a-----~~~Al~~G~~~----~~~~~~i~~ir~~~--~iPiilm 145 (311)
.+.+.++.+.++|.|+|||- -+. |-.+.+- +.|--+.|-++ +-+++++++||+.+ +.||.+-
T Consensus 151 ~f~~AA~ra~~AGfDgVEih------~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vr 224 (382)
T cd02931 151 KFGESAVIAKEAGFDGVEIH------AVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLR 224 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEe------ccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEE
Confidence 57888888999999999993 122 2222221 11112223232 34567888888876 4566663
Q ss_pred ecCcchhccCHHHHHHHHHH---cCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 146 TYYNPILKRGVDNFMSTVRD---IGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~---aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
. |+ .+++..... .+.+. .-..+.+||..++.+.+.+.|++.+-+...+. ... .+..
T Consensus 225 i--~~------~~~~~~~~~~~~~~~~~-~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~-~~~-----------~~~~ 283 (382)
T cd02931 225 Y--SV------KSYIKDLRQGALPGEEF-QEKGRDLEEGLKAAKILEEAGYDALDVDAGSY-DAW-----------YWNH 283 (382)
T ss_pred E--ec------hhhcccccccccccccc-ccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC-ccc-----------cccc
Confidence 2 21 111110000 01111 12345667888888888888988776543321 100 0000
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
... . . -+....++.+.+|+.+++||++.+||++++++.++++.| +|.|-+|-+++.
T Consensus 284 ~~~-~--~---~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 284 PPM-Y--Q---KKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred CCc-c--C---CcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 000 0 0 011123567889998999999999999999999999876 999999988775
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.4e-05 Score=68.97 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.+.+.++.+.+..-..+|+....+ .|...+.+ .+.++++++.+++||.+|+||++.++++++.+.|+|+|++||++
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n---~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~ 106 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDA-SKRGREPL---FELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA 106 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCC-cccCCCCC---HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 556666666554445567766554 22222222 36788888888999999999999999999999999999999998
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 107 l~ 108 (232)
T TIGR03572 107 LE 108 (232)
T ss_pred hc
Confidence 76
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.5e-05 Score=70.57 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.+.+..+.+.+..-..+|+..... .+... ....+.++++++.+++||++|+||++.++++++++.|||+|++||++
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~-~~~~~---~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~ 106 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITA-SSEGR---DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAA 106 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCc-ccccC---cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 445666666554556678776553 11111 22357899999988999999999999999999999999999999988
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 107 l~ 108 (253)
T PRK02083 107 VA 108 (253)
T ss_pred hh
Confidence 76
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0004 Score=71.99 Aligned_cols=175 Identities=17% Similarity=0.189 Sum_probs=112.5
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEc--------CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEE
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELG--------VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIA 143 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG--------~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPii 143 (311)
....++...++..|+++|++.||++ +||.. -+ =++.++++++. .++|+.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~-------------------e~---p~e~lr~l~~~~~~~~lq 80 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLG-------------------ED---PWERLRELKKAMPNTPQQ 80 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccC-------------------CC---HHHHHHHHHHhCCCCeEE
Confidence 3456788999999999999999994 44421 11 14566666654 567776
Q ss_pred EEe-------cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCe---EEE-eCCCChHHHHHH
Q 021527 144 LFT-------YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIEL---VLF-TTPTTPTDRMKA 210 (311)
Q Consensus 144 lm~-------Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~---I~l-isp~t~~eri~~ 210 (311)
.+. |.+ .-.--.+.|++.+.++|+|.+-+-|-.. +......+.++++|... |.+ .+|..+.+...+
T Consensus 81 ml~Rg~n~vg~~~-ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~ 159 (593)
T PRK14040 81 MLLRGQNLLGYRH-YADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVD 159 (593)
T ss_pred EEecCcceecccc-CcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHH
Confidence 543 222 0000236799999999999998876432 34566788889999853 222 356444454433
Q ss_pred HHH----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 211 IVE----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 211 i~~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+++ ..-..+|+....|. ..|..+.++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 160 ~a~~l~~~Gad~i~i~Dt~G~-----l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~-An~laAieAGa~~v 227 (593)
T PRK14040 160 LAKQLEDMGVDSLCIKDMAGL-----LKPYAAYELVSRIKKRVDVPLHLHCHATTGLST-ATLLKAIEAGIDGV 227 (593)
T ss_pred HHHHHHHcCCCEEEECCCCCC-----cCHHHHHHHHHHHHHhcCCeEEEEECCCCchHH-HHHHHHHHcCCCEE
Confidence 333 22334565554442 34677899999999988888766 445543 44556678999866
|
|
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00078 Score=63.40 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+.-+++++.|.+.|+|.||+|. |+.|.+- |-. ...+ +.++.+....+..+..+. .|
T Consensus 19 ~e~K~~i~~~L~~~Gv~~IEvGs-~~~~~~~-p~~-----------~d~~---~~~~~l~~~~~~~~~~~~-~~------ 75 (274)
T cd07938 19 TEDKIELIDALSAAGLRRIEVTS-FVSPKWV-PQM-----------ADAE---EVLAGLPRRPGVRYSALV-PN------ 75 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCC-CCCcccc-ccc-----------CCHH---HHHhhcccCCCCEEEEEC-CC------
Confidence 47889999999999999999995 3444321 110 0111 233333332234444443 22
Q ss_pred HHHHHHHHHHcCCcEEEecCCCh----------------hhHHHHHHHHHHcCCCeEEEeC-----C---CChHHHHHHH
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPL----------------EETESLQKEAMKNKIELVLFTT-----P---TTPTDRMKAI 211 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~----------------ee~~~~~~~~~~~gi~~I~lis-----p---~t~~eri~~i 211 (311)
.+-++.+.++|++.+.+..-.- +...+..+.++++|+.+...++ | .++.+.+.++
T Consensus 76 -~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~ 154 (274)
T cd07938 76 -LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEV 154 (274)
T ss_pred -HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHH
Confidence 5568899999999887753221 2245567788999997653221 1 1233443333
Q ss_pred HHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 212 VEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 212 ~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++. .-..+|+....| . ..|..+.++++.+|+.. ++|+-+ .+|... .+.....++|||.+
T Consensus 155 ~~~~~~~Ga~~i~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~-AN~laA~~aGa~~i 222 (274)
T cd07938 155 AERLLDLGCDEISLGDTIG---V--ATPAQVRRLLEAVLERFPDEKLALHFHDTRGQAL-ANILAALEAGVRRF 222 (274)
T ss_pred HHHHHHcCCCEEEECCCCC---c--cCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHH-HHHHHHHHhCCCEE
Confidence 332 233466665444 3 34677899999999876 467655 345543 45566678999865
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00051 Score=70.34 Aligned_cols=173 Identities=17% Similarity=0.211 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cC-CCcEEEEecCc-chh
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QM-SCPIALFTYYN-PIL 152 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~-~iPiilm~Y~n-~i~ 152 (311)
.+.-+++++.|.+.|+|.||+|+|++.|- -++.++++++ .. +..|..++-.. +-.
T Consensus 22 ~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~----------------------d~~~v~~i~~~~~~~~~i~~~~r~~r~~~ 79 (526)
T TIGR00977 22 LEDKIRIAERLDDLGIHYIEGGWPGANPK----------------------DVQFFWQLKEMNFKNAKIVAFCSTRRPHK 79 (526)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCChH----------------------HHHHHHHHHHhCCCCcEEEEEeeecCCCC
Confidence 47789999999999999999999998761 1334555543 22 23455543111 101
Q ss_pred ccCHHHHHHHHHHcCCcEEEec----CC--------Chhh----HHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHH
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVP----DV--------PLEE----TESLQKEAMKNKIELVLFTT-----PTTPTDRMKAI 211 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviip----Dl--------p~ee----~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i 211 (311)
.-..++-++.+.++|.+.+.+. |+ ..+| ..+..+.++++|+++.+... -.++.+.+.++
T Consensus 80 ~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~ 159 (526)
T TIGR00977 80 KVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALAT 159 (526)
T ss_pred CCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHH
Confidence 1133567888999999987762 21 1233 34557788999987653222 13455665555
Q ss_pred HHhC----CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc-EEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 212 VEAS----EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP-VAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 212 ~~~a----~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P-v~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++.+ ..-+++....| . ..|..+.++++.+++.++.+ +-+ .+|...+ +....+++||+.|
T Consensus 160 ~~~a~~aGad~i~i~DTvG---~--~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvA-NslaAv~AGA~~V 227 (526)
T TIGR00977 160 LATAQQAGADWLVLCDTNG---G--TLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVA-NSLLAVEAGATMV 227 (526)
T ss_pred HHHHHhCCCCeEEEecCCC---C--cCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHH-HHHHHHHhCCCEE
Confidence 5542 23456655444 2 35778889999999887654 333 3444443 3445567899876
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00036 Score=70.27 Aligned_cols=179 Identities=21% Similarity=0.250 Sum_probs=114.0
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEE-------
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALF------- 145 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm------- 145 (311)
-..++...++..|+++|++.||++ -|-..+.+ .| +.-++=.+.++.+|+. .+.|+..+
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~w--------GGAtfd~~-~r-----fl~edpwerlr~~r~~~~nt~lqmLlRG~n~v 97 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECW--------GGATFDAC-IR-----FLNEDPWERLRTLKKGLPNTRLQMLLRGQNLL 97 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEec--------CCcchhhh-hc-----ccCCCHHHHHHHHHHhCCCCceeeeecccccc
Confidence 345778999999999999999996 12222222 11 1111224566666654 45676544
Q ss_pred ecCc---chhccCHHHHHHHHHHcCCcEEEecCCChh--hHHHHHHHHHHcCCCeEEEe----CCCChHH----HHHHHH
Q 021527 146 TYYN---PILKRGVDNFMSTVRDIGIRGLVVPDVPLE--ETESLQKEAMKNKIELVLFT----TPTTPTD----RMKAIV 212 (311)
Q Consensus 146 ~Y~n---~i~~~g~~~fi~~~~~aGadGviipDlp~e--e~~~~~~~~~~~gi~~I~li----sp~t~~e----ri~~i~ 212 (311)
+|.| .+ ++.|++.+++.|+|-+-+-|-..+ ..+...+.+++.|......+ +|..+.+ ..+++.
T Consensus 98 gy~~ypddv----v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~ 173 (468)
T PRK12581 98 GYRHYADDI----VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELV 173 (468)
T ss_pred CccCCcchH----HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHH
Confidence 2333 22 257999999999999999886543 35667888899998654333 4544333 334443
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+..-.-||+....|. ..|..+.++++.+|+..++||-+ ..|... .+.-...++|||.|
T Consensus 174 ~~Gad~I~IkDtaG~-----l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~-An~laAieAGad~v 235 (468)
T PRK12581 174 EMGADSICIKDMAGI-----LTPKAAKELVSGIKAMTNLPLIVHTHATSGISQ-MTYLAAVEAGADRI 235 (468)
T ss_pred HcCCCEEEECCCCCC-----cCHHHHHHHHHHHHhccCCeEEEEeCCCCccHH-HHHHHHHHcCCCEE
Confidence 433345666554442 34667889999999987888766 445543 45666778999865
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.008 Score=56.95 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=135.5
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..++.+ -++..|=+ .|++...-++++.++.++.+|---.|-.-.+. ..+.+..
T Consensus 4 ~k~ll~~A~~~~-yAV~AfN~---~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~-----------------~~~~~~~ 62 (282)
T TIGR01858 4 TKYMLQDAQAGG-YAVPAFNI---HNLETIQAVVETAAEMRSPVILAGTPGTFKHA-----------------GTEYIVA 62 (282)
T ss_pred HHHHHHHHHHcC-CeEEEEEe---CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhC-----------------CHHHHHH
Confidence 355666655443 45544543 47789999999999999988765433222222 2334456
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEe-
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFT- 199 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~li- 199 (311)
+++.+.++.++||.+-. -+..-.+.+.+|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= --+
T Consensus 63 ~~~~~a~~~~VPValHL-----DHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 137 (282)
T TIGR01858 63 LCSAASTTYNMPLALHL-----DHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLG 137 (282)
T ss_pred HHHHHHHHCCCCEEEEC-----CCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 77788888899999853 1222347899999999999988 4688887 6778888988886321 001
Q ss_pred ------------CCCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCC
Q 021527 200 ------------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISK 261 (311)
Q Consensus 200 ------------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst 261 (311)
..-|.++..++..+. .|..++ + +..|..-....++ .+.|+++++.+++|++. |.|+.
T Consensus 138 g~e~~~~~~~~~~~~T~peea~~Fv~~-TgvD~LAvaiGt~HG~yk~~p~Ld---f~~L~~I~~~~~iPLVlHGgSG~~- 212 (282)
T TIGR01858 138 GVEDDLSVDEEDALYTDPQEAKEFVEA-TGVDSLAVAIGTAHGLYKKTPKLD---FDRLAEIREVVDVPLVLHGASDVP- 212 (282)
T ss_pred CccCCCccccchhccCCHHHHHHHHHH-HCcCEEecccCccccCcCCCCccC---HHHHHHHHHHhCCCeEEecCCCCC-
Confidence 012333444555442 344454 2 3334332222222 46789999989999866 77886
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=|=|+|.+....
T Consensus 213 ~e~~~~ai~~Gi~KiNi~T~l~~a~ 237 (282)
T TIGR01858 213 DEDVRRTIELGICKVNVATELKIAF 237 (282)
T ss_pred HHHHHHHHHcCCeEEEeCcHHHHHH
Confidence 7999999999999999999987543
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.001 Score=61.56 Aligned_cols=180 Identities=19% Similarity=0.285 Sum_probs=112.3
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH--HcCCCHHHHHHHHHHhhccCCCcEEEE---ecCcchhccC
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL--ARGTNFNAILSMLKEVVPQMSCPIALF---TYYNPILKRG 155 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al--~~G~~~~~~~~~i~~ir~~~~iPiilm---~Y~n~i~~~g 155 (311)
-.++.++++|.|++-++ |..+..+. .. ....++++.++.++.|.+..++|++.. +|.|+- .
T Consensus 20 ~sA~~~e~~G~~ai~~s---------~~~~~~s~--G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~---~ 85 (243)
T cd00377 20 LSARLAERAGFKAIYTS---------GAGVAASL--GLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNAL---N 85 (243)
T ss_pred HHHHHHHHcCCCEEEec---------cHHHHHhc--CCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHH---H
Confidence 45667788899999996 33322211 11 012588999999999999899999886 465541 2
Q ss_pred HHHHHHHHHHcCCcEEEec---------------CCChhhHHHHHHHHHH-cC--CCeEEEeC-----C--CChH---HH
Q 021527 156 VDNFMSTVRDIGIRGLVVP---------------DVPLEETESLQKEAMK-NK--IELVLFTT-----P--TTPT---DR 207 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip---------------Dlp~ee~~~~~~~~~~-~g--i~~I~lis-----p--~t~~---er 207 (311)
..+-++.+.++|++|+.+= =++.||..+-.+.+++ .. -+.++..- . ...+ +|
T Consensus 86 ~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~R 165 (243)
T cd00377 86 VARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIER 165 (243)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHH
Confidence 3456778888999999992 2466775543333333 22 23333321 1 2222 56
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCC-HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISK-PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst-~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+.+.+..-..+|+.. .+ ..+.++++.+..+.|+.+-..=.. .-.++++.++|..-++.|+.+.+..
T Consensus 166 a~ay~~AGAD~v~v~~---~~---------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~~~~a 233 (243)
T cd00377 166 AKAYAEAGADGIFVEG---LK---------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLALLRAA 233 (243)
T ss_pred HHHHHHcCCCEEEeCC---CC---------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHHHHHH
Confidence 6666555445555542 11 126688888888899877532211 1246677788999999999888754
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0029 Score=59.05 Aligned_cols=195 Identities=19% Similarity=0.264 Sum_probs=121.0
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM 130 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~ 130 (311)
...|++.-++|+..+-.++....| ..++.+..+|.|++-|+...+. .+.+++.++
T Consensus 7 ~n~lk~~l~~g~~~~g~~~~~~sp------~~~e~~a~~G~D~v~iD~EHg~-------------------~~~~~~~~~ 61 (256)
T PRK10558 7 PNKFKAALAAKQVQIGCWSALANP------ITTEVLGLAGFDWLVLDGEHAP-------------------NDVSTFIPQ 61 (256)
T ss_pred CHHHHHHHHcCCceEEEEEcCCCc------HHHHHHHhcCCCEEEEccccCC-------------------CCHHHHHHH
Confidence 344544445677777778888888 6778888999999999866532 344555556
Q ss_pred HHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHH---------------------
Q 021527 131 LKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEA--------------------- 188 (311)
Q Consensus 131 i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~--------------------- 188 (311)
+..++. ..++.++-.-.+ -...++.+.+.|++||++|.+- .||++++++.+
T Consensus 62 i~a~~~-~g~~~lVRvp~~------~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~ 134 (256)
T PRK10558 62 LMALKG-SASAPVVRVPTN------EPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGT 134 (256)
T ss_pred HHHHhh-cCCCcEEECCCC------CHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCC
Confidence 665543 445555554333 2357788999999999999764 24444443322
Q ss_pred -----HH--cCCCeEEEeCCCChH--HHHHHHHHhCCc--eEEEE-----ecCCccCCCCCCCchHHHHHHHHhhc---C
Q 021527 189 -----MK--NKIELVLFTTPTTPT--DRMKAIVEASEG--FVYLV-----SSIGVTGARASISGHVQTLLREIKES---S 249 (311)
Q Consensus 189 -----~~--~gi~~I~lisp~t~~--eri~~i~~~a~g--fiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~---~ 249 (311)
+. ..+.++..+ .|+. +.+.+|++. .| .+++. ...|..|.. ..+++.+.+.++-+. .
T Consensus 135 ~~~y~~~an~~~~vi~~I--Et~~av~ni~eI~av-~gvd~l~iG~~DLs~slG~~~~~--~~~~v~~a~~~v~~aa~~~ 209 (256)
T PRK10558 135 VPDYFAQSNKNITVLVQI--ESQQGVDNVDAIAAT-EGVDGIFVGPSDLAAALGHLGNA--SHPDVQKAIQHIFARAKAH 209 (256)
T ss_pred hHHHHHHhccccEEEEEE--CCHHHHHHHHHHhCC-CCCcEEEECHHHHHHHcCCCCCC--CCHHHHHHHHHHHHHHHHc
Confidence 11 123344444 4443 667777764 44 45552 233443321 234566666655443 2
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++|+ |.-..+++++++..+.|++-+.+|+-..-
T Consensus 210 G~~~--g~~~~~~~~~~~~~~~G~~~v~~~~D~~~ 242 (256)
T PRK10558 210 GKPS--GILAPVEADARRYLEWGATFVAVGSDLGV 242 (256)
T ss_pred CCce--EEcCCCHHHHHHHHHcCCCEEEEchHHHH
Confidence 5664 55567799999999999999999976553
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.5e-05 Score=68.13 Aligned_cols=77 Identities=31% Similarity=0.434 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+.+..+.+.+..-..+|+....+. +|. + ...++++++++.+++|+.+|+||+++|+++++++.|||.|++||+
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~--~---~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~ 104 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGE--P---VNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTA 104 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCC--C---CCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECch
Confidence 3445555554533445677655442 111 1 124689999998899999999999999999999999999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
...
T Consensus 105 ~l~ 107 (234)
T cd04732 105 AVK 107 (234)
T ss_pred HHh
Confidence 875
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.91 E-value=5e-05 Score=70.30 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+..+...+.....+|++...+..|.. ...+.++++.+.+++|+.+|+||+|.|+++.+++.|||=||+||+.++
T Consensus 34 ~~~a~~~~~~g~~~lhivDLd~a~g~~-----~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~ 108 (243)
T TIGR01919 34 ESAAKWWEQGGAEWIHLVDLDAAFGGG-----NNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALE 108 (243)
T ss_pred HHHHHHHHhCCCeEEEEEECCCCCCCc-----chHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 344555555556679999887755432 124689998888889999999999999999999999999999999776
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.011 Score=56.01 Aligned_cols=205 Identities=18% Similarity=0.217 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++. +-++..|= -.+++...-++++.++.++.+|---.|..-.+. ..+.+.
T Consensus 5 ~~~~~l~~A~~~-~yaV~AfN---~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~-----------------g~~~~~ 63 (284)
T PRK12737 5 STKNMLKKAQAE-GYAVPAFN---IHNLETLQVVVETAAELRSPVILAGTPGTFSYA-----------------GTDYIV 63 (284)
T ss_pred cHHHHHHHHHHc-CceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhC-----------------CHHHHH
Confidence 356777776554 34555555 346789999999999999988765433221111 223345
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEe
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFT 199 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~li 199 (311)
.+++...++.++||.+.. + +..-.+.+.+|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= --+
T Consensus 64 ~~~~~~a~~~~VPValHL--D---H~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~i 138 (284)
T PRK12737 64 AIAEVAARKYNIPLALHL--D---HHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRL 138 (284)
T ss_pred HHHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 677777778899999853 1 222246889999999999988 4789887 6678888998887421 011
Q ss_pred C-----------C--CChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 200 T-----------P--TTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 200 s-----------p--~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
. . -|.++..++..+. .|...+ + +..|..-....++ .+.++++++.+++|++. |.|+.
T Consensus 139 gg~e~~~~~~~~~~~~T~peeA~~Fv~~-TgvD~LAvaiGt~HG~y~~~p~Ld---~~~L~~I~~~~~iPLVlHGgSG~~ 214 (284)
T PRK12737 139 GGQEDDLVVDEKDAMYTNPDAAAEFVER-TGIDSLAVAIGTAHGLYKGEPKLD---FERLAEIREKVSIPLVLHGASGVP 214 (284)
T ss_pred cCccCCcccccccccCCCHHHHHHHHHH-hCCCEEeeccCccccccCCCCcCC---HHHHHHHHHHhCCCEEEeCCCCCC
Confidence 0 0 2334444555553 354444 3 3344332222222 36789999988999866 77876
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.|+++++.+.|.-=+=|+|.+..
T Consensus 215 -~e~~~kai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 215 -DEDVKKAISLGICKVNVATELKI 237 (284)
T ss_pred -HHHHHHHHHCCCeEEEeCcHHHH
Confidence 69999999999999999999863
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00073 Score=63.06 Aligned_cols=161 Identities=20% Similarity=0.278 Sum_probs=96.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|||+|.+|...+.|-++.-..+. .++.+...++.+++.+++|+-+-+|-
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~----------E~~rl~~~v~~~~~~~~~plsiDT~~------ 84 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEE----------ELNRVVPVIKALRDQPDVPISVDTYR------ 84 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH----------HHHHHHHHHHHHHhcCCCeEEEeCCC------
Confidence 34788899999999999999999877777544211110 11234567777887789999998763
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC---CCC----------hHHHHHHHHH-----hCC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT---PTT----------PTDRMKAIVE-----ASE 216 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis---p~t----------~~eri~~i~~-----~a~ 216 (311)
.+-++.+.++|++- +.|...+...++.+.++++|...|.+-. |.+ .++++....+ ...
T Consensus 85 --~~vi~~al~~G~~i--INsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (257)
T TIGR01496 85 --AEVARAALEAGADI--INDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAA 160 (257)
T ss_pred --HHHHHHHHHcCCCE--EEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHc
Confidence 34567777789884 5555443344567778999998887643 333 1223221111 123
Q ss_pred c----eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEee
Q 021527 217 G----FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGF 257 (311)
Q Consensus 217 g----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGf 257 (311)
| -+|+-...|...+ ...+-.+.+.++++|+ .+.|+++|-
T Consensus 161 Gi~~~~iilDPg~gf~ks-~~~~~~~l~~i~~l~~-~~~p~l~G~ 203 (257)
T TIGR01496 161 GVAAERIILDPGIGFGKT-PEHNLELLKHLEEFVA-LGYPLLVGA 203 (257)
T ss_pred CCCHHHEEEECCCCcccC-HHHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 3 3566666664332 1112223344555554 468998764
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.5e-05 Score=69.56 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=59.3
Q ss_pred ChHHHHHHHHH-hCCceEEEEecCCcc-CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 203 TPTDRMKAIVE-ASEGFVYLVSSIGVT-GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 203 t~~eri~~i~~-~a~gfiY~vs~~G~T-G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.|.+..+.+.+ ..-..+|++...+.- |. + ...+.++++.+.+++|+.+|+||+|.|+++++++.|||=|||||
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~----~-~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKAQH----A-REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccccCC----c-chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 45565555544 234568888876642 22 1 23467999988889999999999999999999999999999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+..+
T Consensus 107 ~a~~ 110 (234)
T PRK13587 107 KGIQ 110 (234)
T ss_pred hHhc
Confidence 8875
|
|
| >TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0038 Score=58.06 Aligned_cols=190 Identities=19% Similarity=0.255 Sum_probs=118.7
Q ss_pred HHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 021527 56 RLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV 135 (311)
Q Consensus 56 ~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir 135 (311)
+.-++|+..+-.++..+.| ..++.+..+|.|++-|+...+- .+.+++.+++..++
T Consensus 5 ~~l~~g~~~~G~~~~~~sp------~~~e~~a~~G~D~v~iD~EHg~-------------------~~~~~~~~~~~a~~ 59 (249)
T TIGR03239 5 QDLLARETLIGCWSALGNP------ITTEVLGLAGFDWLLLDGEHAP-------------------NDVLTFIPQLMALK 59 (249)
T ss_pred HHHHcCCceEEEEEcCCCc------HHHHHHHhcCCCEEEEecccCC-------------------CCHHHHHHHHHHHh
Confidence 3334577778788888888 6778888999999999865531 34555556666655
Q ss_pred ccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHH--------------------------
Q 021527 136 PQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEA-------------------------- 188 (311)
Q Consensus 136 ~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~-------------------------- 188 (311)
. ..++.++-.-+| -...++++.+.|++||++|.+-- ||++++++.+
T Consensus 60 ~-~g~~~~VRvp~~------~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~ 132 (249)
T TIGR03239 60 G-SASAPVVRPPWN------EPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYF 132 (249)
T ss_pred h-cCCCcEEECCCC------CHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHH
Confidence 3 344445544333 23567889999999999997642 4444444222
Q ss_pred HHc--CCCeEEEeCCCChH--HHHHHHHHhCCc--eEEEE-----ecCCccCCCCCCCchHHHHHHHHhhc---CCCcEE
Q 021527 189 MKN--KIELVLFTTPTTPT--DRMKAIVEASEG--FVYLV-----SSIGVTGARASISGHVQTLLREIKES---STKPVA 254 (311)
Q Consensus 189 ~~~--gi~~I~lisp~t~~--eri~~i~~~a~g--fiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~---~~~Pv~ 254 (311)
+.. .+.++.++ .|+. +.+.+|++. .| .+++. ...|..|.. ..+++.+.++++-+. .++|+
T Consensus 133 ~~~n~~~~vi~~I--Et~~av~n~~eI~av-~gvd~l~iG~~DLs~slG~~~~~--~~~~v~~a~~~v~~aa~a~G~~~- 206 (249)
T TIGR03239 133 ATINDNITVLVQI--ESQKGVDNVDEIAAV-DGVDGIFVGPSDLAAALGHLGNP--NHPDVQKAIRHIFDRAAAHGKPC- 206 (249)
T ss_pred HHhccccEEEEEE--CCHHHHHhHHHHhCC-CCCCEEEEChHHHHHHcCCCCCC--CCHHHHHHHHHHHHHHHHcCCCE-
Confidence 111 22333444 4443 667777764 44 45553 134444432 235566666665443 25664
Q ss_pred EeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 255 VGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 255 vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|.-..+++++++..+.|++-+.+|+-..-
T Consensus 207 -g~~~~~~~~~~~~~~~G~~~~~~~~D~~~ 235 (249)
T TIGR03239 207 -GILAPVEADARRYLEWGATFVAVGSDLGV 235 (249)
T ss_pred -EEcCCCHHHHHHHHHcCCCEEEEhHHHHH
Confidence 55557889999999999999999976553
|
In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.014 Score=55.33 Aligned_cols=206 Identities=18% Similarity=0.221 Sum_probs=136.7
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..++++ -++..|= -.+++...-++++.++.+..+|----| |. ++. ...+.+..
T Consensus 6 ~k~iL~~A~~~~-yAV~AfN---~~n~e~~~avi~AAee~~sPvIlq~s~-------~~---------~~~-~~~~~~~~ 64 (286)
T PRK12738 6 TKYLLQDAQANG-YAVPAFN---IHNAETIQAILEVCSEMRSPVILAGTP-------GT---------FKH-IALEEIYA 64 (286)
T ss_pred HHHHHHHHHHCC-ceEEEEE---eCCHHHHHHHHHHHHHHCCCEEEEcCc-------ch---------hhh-CCHHHHHH
Confidence 466676665543 4554444 346889999999999999988765311 21 111 23444566
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEe-
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFT- 199 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~li- 199 (311)
+++.+.++.++||.+-. -+....+.+..|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= --+
T Consensus 65 ~~~~~a~~~~VPValHL-----DHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~ig 139 (286)
T PRK12738 65 LCSAYSTTYNMPLALHL-----DHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG 139 (286)
T ss_pred HHHHHHHHCCCCEEEEC-----CCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeC
Confidence 78888888899999853 2222356888999999999988 4789887 6778888988887321 001
Q ss_pred --------CC----CChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCC
Q 021527 200 --------TP----TTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISK 261 (311)
Q Consensus 200 --------sp----~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst 261 (311)
.. -|.++..++..+. .|...+ + +..|.+-....+ ..+.++++++.+++|++. |.|+.
T Consensus 140 g~ed~~~~~~~~~~~T~peea~~Fv~~-TgvD~LAvaiGt~HG~Y~~~p~L---dfd~l~~I~~~~~vPLVLHGgSG~~- 214 (286)
T PRK12738 140 GVEDDMSVDAESAFLTDPQEAKRFVEL-TGVDSLAVAIGTAHGLYSKTPKI---DFQRLAEIREVVDVPLVLHGASDVP- 214 (286)
T ss_pred CccCCcccccchhcCCCHHHHHHHHHH-hCCCEEEeccCcccCCCCCCCcC---CHHHHHHHHHHhCCCEEEeCCCCCC-
Confidence 00 2334555555553 344444 2 344433222122 246799999999999866 77887
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=|=|+|.+....
T Consensus 215 ~e~~~kai~~GI~KiNi~T~l~~a~ 239 (286)
T PRK12738 215 DEFVRRTIELGVTKVNVATELKIAF 239 (286)
T ss_pred HHHHHHHHHcCCeEEEeCcHHHHHH
Confidence 7999999999999999999887654
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.9e-05 Score=68.74 Aligned_cols=77 Identities=22% Similarity=0.293 Sum_probs=55.8
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+.+.++.+.+..-..+|+....+ -|... +...++++++++.+++||++++||++.++++++++.|+|+|++|+++.
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~-~~~~~---~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~ 104 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITA-SSEGR---ETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAV 104 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCc-ccccC---cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhh
Confidence 34555555444445556654332 11111 123478999999889999999999999999999999999999999987
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 105 ~ 105 (243)
T cd04731 105 E 105 (243)
T ss_pred h
Confidence 6
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00019 Score=69.71 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE
Q 021527 78 TTAEALKLLDSCGSDIIELGV-----------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL 144 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil 144 (311)
.+.+.++.+.++|.|+|||-. |.++---| |-.+.+ +.+-.+++++.||+.+..++.+
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslen----------R~r~~~eiv~aIR~~vG~d~~v 207 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFEN----------RMRFPVEIVRAVRAAVGEDFII 207 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHH----------HhHHHHHHHHHHHHHcCCCceE
Confidence 578888899999999999942 32222122 111111 1344577888889876544444
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEec
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSS 224 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~ 224 (311)
..-.| ..++. -.....+|..++.+.+.++|++.+-+.. ...+++...
T Consensus 208 ~iRi~------~~D~~------------~~g~~~~e~~~i~~~Le~~G~d~i~vs~-g~~e~~~~~-------------- 254 (353)
T cd02930 208 IYRLS------MLDLV------------EGGSTWEEVVALAKALEAAGADILNTGI-GWHEARVPT-------------- 254 (353)
T ss_pred EEEec------ccccC------------CCCCCHHHHHHHHHHHHHcCCCEEEeCC-CcCCCCCcc--------------
Confidence 32222 11100 0113456777788888888888775421 111111000
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 225 IGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.... .......+..+++|+.+++||++++++.+++++.++++.| +|.|-+|-+++.
T Consensus 255 ---~~~~-~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 255 ---IATS-VPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred ---cccc-CCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 0000 0011124567889999999999999999999999999876 999999987765
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00053 Score=63.37 Aligned_cols=198 Identities=20% Similarity=0.336 Sum_probs=118.3
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAILSML 131 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~~~~i 131 (311)
|+++.++++..++| |--| .--++.++++|.+.+-.. |--+..+. -+ . .-.++++.++.+
T Consensus 1 fr~L~~~~~~l~~p----~~~D----~~SAr~~e~~Gf~ai~~s---------g~~~a~s~--G~pD~~~lt~~e~~~~~ 61 (238)
T PF13714_consen 1 FRQLHEPGKPLVLP----NVWD----ALSARLAERAGFDAIATS---------GAGVAASL--GYPDGGLLTLTEMLAAV 61 (238)
T ss_dssp HHHHHHSSSSEEEE----EESS----HHHHHHHHHTT-SEEEEH---------HHHHHHHT--TS-SSS-S-HHHHHHHH
T ss_pred ChhhhcCCCcEEeC----CCcC----HHHHHHHHHcCCCEEEec---------hHHHHHHc--CCCCCCCCCHHHHHHHH
Confidence 44555565554433 3233 244667788899999885 43332211 11 0 125888999999
Q ss_pred HHhhccCCCcEEEE---ecCc-chhccCHHHHHHHHHHcCCcEEEecCC----------ChhhHHH-HHHHHHHc-CCCe
Q 021527 132 KEVVPQMSCPIALF---TYYN-PILKRGVDNFMSTVRDIGIRGLVVPDV----------PLEETES-LQKEAMKN-KIEL 195 (311)
Q Consensus 132 ~~ir~~~~iPiilm---~Y~n-~i~~~g~~~fi~~~~~aGadGviipDl----------p~ee~~~-~~~~~~~~-gi~~ 195 (311)
++|...+++|+++. ||-| +. ++.+.++.+.++|+.|+.+-|- |.||..+ ++...+.. +.+.
T Consensus 62 ~~I~~~~~iPv~vD~d~GyG~~~~---~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~ 138 (238)
T PF13714_consen 62 RRIARAVSIPVIVDADTGYGNDPE---NVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDF 138 (238)
T ss_dssp HHHHHHSSSEEEEE-TTTSSSSHH---HHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTS
T ss_pred HHHHhhhcCcEEEEcccccCchhH---HHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeE
Confidence 99999999999998 5766 32 3467889999999999999887 6666433 33333222 2333
Q ss_pred EEEeCCCC---h-------HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHH
Q 021527 196 VLFTTPTT---P-------TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHV 265 (311)
Q Consensus 196 I~lisp~t---~-------~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v 265 (311)
++..=-.+ . .+|.+.+.+..-..+|... . .+ .+.++++.+..+.|+.+-.+-.+ -++
T Consensus 139 ~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~---~--------~~-~~~i~~~~~~~~~Pl~v~~~~~~-~~~ 205 (238)
T PF13714_consen 139 VIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPG---L--------QS-EEEIERIVKAVDGPLNVNPGPGT-LSA 205 (238)
T ss_dssp EEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETT---S--------SS-HHHHHHHHHHHSSEEEEETTSSS-S-H
T ss_pred EEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCC---C--------CC-HHHHHHHHHhcCCCEEEEcCCCC-CCH
Confidence 33221111 1 2566666665445555431 1 11 13366665555789877665323 568
Q ss_pred HHHHHcCCcEEEEhhHhhchh
Q 021527 266 QQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 266 ~~v~~~GADGvIVGSaiv~~~ 286 (311)
+++.++|..-|+.|+.+.+..
T Consensus 206 ~eL~~lGv~~v~~~~~~~~aa 226 (238)
T PF13714_consen 206 EELAELGVKRVSYGNSLLRAA 226 (238)
T ss_dssp HHHHHTTESEEEETSHHHHHH
T ss_pred HHHHHCCCcEEEEcHHHHHHH
Confidence 889999999999999998854
|
... |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0054 Score=55.54 Aligned_cols=189 Identities=18% Similarity=0.187 Sum_probs=108.8
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+|++=+-+.-..|- -++.+..-++.+.++.. -.||.++. | -..+..
T Consensus 13 ~eda~~~~~~Gad~iGfI~~~~S~R----------------~V~~~~a~~i~~~~~~~-i~~VgVf~--~----~~~~~i 69 (210)
T PRK01222 13 PEDAEAAAELGADAIGFVFYPKSPR----------------YVSPEQAAELAAALPPF-VKVVGVFV--N----ASDEEI 69 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCCCCCC----------------cCCHHHHHHHHHhCCCC-CCEEEEEe--C----CCHHHH
Confidence 5788899999999987753222221 13333333344443322 23566654 2 234556
Q ss_pred HHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc--eEEEEecC---CccCCCCC
Q 021527 160 MSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG--FVYLVSSI---GVTGARAS 233 (311)
Q Consensus 160 i~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g--fiY~vs~~---G~TG~~~~ 233 (311)
.+.+.+.+.|.|=++ |.+.++...++. ..+++.+..+......+ +....+.... ++.+-+.. |.||..
T Consensus 70 ~~~~~~~~~d~vQLHg~e~~~~~~~l~~---~~~~~iik~i~v~~~~~-l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~-- 143 (210)
T PRK01222 70 DEIVETVPLDLLQLHGDETPEFCRQLKR---RYGLPVIKALRVRSAGD-LEAAAAYYGDADGLLLDAYVGLPGGTGKT-- 143 (210)
T ss_pred HHHHHhcCCCEEEECCCCCHHHHHHHHh---hcCCcEEEEEecCCHHH-HHHHHhhhccCCEEEEcCCCCCCCCCCCc--
Confidence 677788999999887 444444443432 34667665554433222 2222222222 33333332 555542
Q ss_pred CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHhh
Q 021527 234 ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
.+.. .+. ++ .+.|+++++||+ |||+.++... +.+||=|-|.+...- .....+++++|++.++.+
T Consensus 144 ~dw~---~l~--~~-~~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE~~~-----G~KD~~ki~~f~~~~~~~ 208 (210)
T PRK01222 144 FDWS---LLP--AG-LAKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVESAP-----GIKDPEKIRAFIEAVKSA 208 (210)
T ss_pred cchH---Hhh--hc-cCCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceECCC-----CCcCHHHHHHHHHHHHhh
Confidence 2322 231 12 267999999996 9999998864 789999988877421 123568899999988765
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00028 Score=67.99 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHH--CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhc
Q 021527 77 STTAEALKLLDS--CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILK 153 (311)
Q Consensus 77 ~~~~e~~~~L~~--~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~ 153 (311)
+...+.++.|.+ .|+|.|-|+ .++|.- +..++++++||+.. +++|+.- |..
T Consensus 107 ~~d~er~~~L~~~~~g~D~iviD------~AhGhs---------------~~~i~~ik~ik~~~P~~~vIaG---NV~-- 160 (346)
T PRK05096 107 DADFEKTKQILALSPALNFICID------VANGYS---------------EHFVQFVAKAREAWPDKTICAG---NVV-- 160 (346)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEE------CCCCcH---------------HHHHHHHHHHHHhCCCCcEEEe---ccc--
Confidence 455677778887 599999998 566622 35578999999874 6776653 322
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS 233 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~ 233 (311)
..+-++.+.++|||++-+. +.+--.+ +| |+ +||..-+
T Consensus 161 --T~e~a~~Li~aGAD~vKVG------------------IGpGSiC--tT---r~------------------vtGvG~P 197 (346)
T PRK05096 161 --TGEMVEELILSGADIVKVG------------------IGPGSVC--TT---RV------------------KTGVGYP 197 (346)
T ss_pred --CHHHHHHHHHcCCCEEEEc------------------ccCCccc--cC---cc------------------ccccChh
Confidence 2456778889999998554 2111111 22 11 1221101
Q ss_pred CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 234 ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.-..+. .+.+.....++||+..+||++.-|+.+.+.+|||.|-+||-|.-.-+
T Consensus 198 QltAV~-~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~E 250 (346)
T PRK05096 198 QLSAVI-ECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEE 250 (346)
T ss_pred HHHHHH-HHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCccc
Confidence 001122 23344444689999999999999999999999999999999977554
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00035 Score=68.48 Aligned_cols=176 Identities=18% Similarity=0.232 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEE-------ec-
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALF-------TY- 147 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm-------~Y- 147 (311)
++.+.++++|++.|...+|+. |-..=.++.|-|.. |=.+.++++|+. .+.|+..+ ||
T Consensus 28 ~DmlPi~e~lD~~G~~slE~W---------GGATFDaciRfLnE-----DPWeRLr~lk~~~~nT~LQMLlRGQNlvGYr 93 (472)
T COG5016 28 EDMLPIAEALDKVGYWSLEVW---------GGATFDACIRFLNE-----DPWERLRELKKAVPNTKLQMLLRGQNLVGYR 93 (472)
T ss_pred HhhHHHHHHHHhcCeeEEEec---------CCccHHHHHHHhcC-----CHHHHHHHHHHhCCCcHHHHHHccCcccccc
Confidence 667899999999999999995 32222233343321 223455666655 35564322 33
Q ss_pred --CcchhccCHHHHHHHHHHcCCcEEEecCCChh--hHHHHHHHHHHcCCCeEEEe----CCCChH----HHHHHHHHhC
Q 021527 148 --YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE--ETESLQKEAMKNKIELVLFT----TPTTPT----DRMKAIVEAS 215 (311)
Q Consensus 148 --~n~i~~~g~~~fi~~~~~aGadGviipDlp~e--e~~~~~~~~~~~gi~~I~li----sp~t~~----eri~~i~~~a 215 (311)
.+.+ +++|++.+.+.|.|-+=+=|...+ ......+.++++|......+ +|-.+. +..+++++..
T Consensus 94 hyaDDv----Ve~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g 169 (472)
T COG5016 94 HYADDV----VEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG 169 (472)
T ss_pred CCchHH----HHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC
Confidence 2333 378999999999999988887644 34556778899998544333 333332 3344454443
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
-.-|.+=...|. -.|...+++++.+|+.+++||.+ -.|++... --+..++|+|++
T Consensus 170 ~DSIciKDmaGl-----ltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~-ylkAvEAGvD~i 228 (472)
T COG5016 170 VDSICIKDMAGL-----LTPYEAYELVKAIKKELPVPVELHTHATSGMAEMT-YLKAVEAGVDGI 228 (472)
T ss_pred CCEEEeeccccc-----CChHHHHHHHHHHHHhcCCeeEEecccccchHHHH-HHHHHHhCcchh
Confidence 333443233332 23556789999999999999987 56887544 446678999987
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0005 Score=66.25 Aligned_cols=139 Identities=16% Similarity=0.224 Sum_probs=92.5
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCCh--HHHHHHHHHhC
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTP--TDRMKAIVEAS 215 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~--~eri~~i~~~a 215 (311)
+++||+-- -+.++ +.++....+.+.|.-+++==.+++|+..++.+..+......+....-+.+ .+|++++.+..
T Consensus 44 ~~iPii~A-nMdtv---~~~~mA~~la~~g~~~~iHk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~ 119 (343)
T TIGR01305 44 SGVPIIAA-NMDTV---GTFEMAAALSQHSIFTAIHKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAV 119 (343)
T ss_pred eCCceEec-CCCcc---cCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcC
Confidence 57887762 22223 44678888888888887555688888666665433322222332222222 37888887765
Q ss_pred CceEEE--EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh-----hHhhchhh
Q 021527 216 EGFVYL--VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG-----SAMVKLLG 287 (311)
Q Consensus 216 ~gfiY~--vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG-----Saiv~~~~ 287 (311)
.+..|+ -+..| -...+.+.++++|+..+-+.++.+.|-|+|+++.+.++|||++.|| -...+.+.
T Consensus 120 ~~~d~iviD~AhG-------hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~ 191 (343)
T TIGR01305 120 PQLKFICLDVANG-------YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKT 191 (343)
T ss_pred CCCCEEEEECCCC-------cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeC
Confidence 444444 33333 2345678899999987666768888999999999999999999999 56666553
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0011 Score=62.78 Aligned_cols=105 Identities=13% Similarity=0.248 Sum_probs=72.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++-++.+.+.|||+|.+|...+-|-++.-..+.- ++-+...|+.+++..++||-+.+|.
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE----------~~Rv~pvI~~l~~~~~~~ISIDT~~------ 99 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEE----------LDRVIPVVEAIAQRFEVWISVDTSK------ 99 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHhcCCCeEEEECCC------
Confidence 457889999999999999999999888885553111111 1234567888887778999998874
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 199 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li 199 (311)
.+-++.+.++|+| ++.|..--.-.+..+.++++|...|++-
T Consensus 100 --~~va~~AL~~Gad--iINDI~g~~d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 100 --PEVIRESAKAGAH--IINDIRSLSEPGALEAAAETGLPVCLMH 140 (282)
T ss_pred --HHHHHHHHHcCCC--EEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3456778888999 4655421111234456788998877764
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=66.95 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.|.+..+.+.+..-..+|++...|. .|.. ...+.++++.+.+ .|+.+|+||++.|+++++++.|||=|||||+
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~-----~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~ 104 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSV-----ENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCc-----chHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECch
Confidence 4556666666644455899987763 2322 2346788888877 7999999999999999999999999999998
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
.++
T Consensus 105 a~~ 107 (241)
T PRK14114 105 VLE 107 (241)
T ss_pred hhC
Confidence 776
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.5e-05 Score=68.84 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.|.+.++.+.+..-..+|++...+. ++. + ...++++++.+.+++||.+|+||++.++++++++.|+|+++|||+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~--~---~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~ 105 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGS--E---PNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTA 105 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCC--c---ccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChH
Confidence 4556666665544455777765542 222 2 124688888888899999999999999999999999999999998
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
+.+
T Consensus 106 ~~~ 108 (258)
T PRK01033 106 ALE 108 (258)
T ss_pred Hhc
Confidence 876
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.7e-05 Score=67.82 Aligned_cols=78 Identities=28% Similarity=0.361 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.+.+.++.+.+..-..+|+....+.. .+. ....+.++++.+.+++|+.+|+||++.|+++.++++|||+|++||..
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~---~~~-~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAF---EGE-RKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhh---cCC-cccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 34566666555443456666654321 111 12246788888888999999999999999999999999999999988
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 109 ~~ 110 (241)
T PRK13585 109 VE 110 (241)
T ss_pred hh
Confidence 75
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00083 Score=64.76 Aligned_cols=138 Identities=19% Similarity=0.165 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHCC--CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 77 STTAEALKLLDSCG--SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~G--aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+...+-++.|.++| +|.|-++ .+.|.- +..++.+++||+.+.-+.++-+ |..
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD------~AhGhs---------------~~~i~~ik~ir~~~p~~~viaG--NV~--- 159 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLD------VANGYS---------------EHFVEFVKLVREAFPEHTIMAG--NVV--- 159 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEE------CCCCcH---------------HHHHHHHHHHHhhCCCCeEEEe--ccc---
Confidence 45567888888885 9999998 555621 3457899999988654555544 311
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
..+-++.+.++|||++.+.=-| .- ..+| |. ++|.. .
T Consensus 160 -T~e~a~~Li~aGAD~ikVgiGp----------------GS----ictt---R~------------------~~Gvg--~ 195 (343)
T TIGR01305 160 -TGEMVEELILSGADIVKVGIGP----------------GS----VCTT---RT------------------KTGVG--Y 195 (343)
T ss_pred -CHHHHHHHHHcCCCEEEEcccC----------------CC----cccC---ce------------------eCCCC--c
Confidence 2456778888999998664111 10 1111 10 11111 0
Q ss_pred CchHHHHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 235 SGHVQTLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 235 ~~~~~~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+.+ ..|.++.+ ..++||+..+||++.-|+.+.+.+|||.|-+|+.+.-.-
T Consensus 196 -pql-tAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~ 248 (343)
T TIGR01305 196 -PQL-SAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHT 248 (343)
T ss_pred -CHH-HHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcC
Confidence 111 22333322 347899999999999999999999999999998886544
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.026 Score=53.52 Aligned_cols=208 Identities=17% Similarity=0.224 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++. +-++-.|=+ .|++...-++++.++.++.+|---.|-.-.+ ....+.+.
T Consensus 5 ~~~~lL~~A~~~-~yAV~AfN~---~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~----------------~~~~~~~~ 64 (285)
T PRK07709 5 SMKEMLNKALEG-KYAVGQFNM---NNLEWTQAILAAAEEEKSPVILGVSEGAARH----------------MTGFKTVV 64 (285)
T ss_pred cHHHHHHHHHHC-CceEEEEEE---CCHHHHHHHHHHHHHHCCCEEEEcCcchhhh----------------cCCHHHHH
Confidence 456777776555 345655653 4788889999999999999876543322222 11233345
Q ss_pred HHHHHhhccCC--CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---E
Q 021527 129 SMLKEVVPQMS--CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---L 197 (311)
Q Consensus 129 ~~i~~ir~~~~--iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~ 197 (311)
.+++.+.++.+ +||.+.. -+..-.+.+..+.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= -
T Consensus 65 ~~~~~~a~~~~~~VPV~lHL-----DHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG 139 (285)
T PRK07709 65 AMVKALIEEMNITVPVAIHL-----DHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELG 139 (285)
T ss_pred HHHHHHHHHcCCCCcEEEEC-----CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 56777766654 8999853 1222346788999999999988 4688887 6778888998887421 0
Q ss_pred Ee-C----------CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 198 FT-T----------PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 198 li-s----------p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
.+ . .-|.++..++..+.. |...+ + +..|.+-....++ .+.|+++++.+++|++. |.|+.
T Consensus 140 ~igg~ed~~~~~~~~yT~peeA~~Fv~~T-gvD~LAvaiGt~HG~Y~~~p~L~---~~~L~~I~~~~~iPLVLHGgSG~~ 215 (285)
T PRK07709 140 TVGGQEDDVIAEGVIYADPAECKHLVEAT-GIDCLAPALGSVHGPYKGEPNLG---FAEMEQVRDFTGVPLVLHGGTGIP 215 (285)
T ss_pred ccCCccCCcccccccCCCHHHHHHHHHHh-CCCEEEEeecccccCcCCCCccC---HHHHHHHHHHHCCCEEEeCCCCCC
Confidence 11 0 124445555665533 44444 2 4444432222233 36788888888999866 77776
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=+=|+|.+....
T Consensus 216 -~e~~~~ai~~Gi~KiNi~T~l~~a~ 240 (285)
T PRK07709 216 -TADIEKAISLGTSKINVNTENQIEF 240 (285)
T ss_pred -HHHHHHHHHcCCeEEEeChHHHHHH
Confidence 6999999999999999999886544
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.019 Score=54.55 Aligned_cols=207 Identities=16% Similarity=0.218 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++. +-++..|=+ .+++...-++++.++.+..+|---.|..-.+ ...+.+.
T Consensus 5 ~~k~iL~~A~~~-~yaV~AfNv---~n~e~~~avi~AAee~~sPvIlq~~~~~~~~-----------------~g~~~~~ 63 (284)
T PRK12857 5 TVAELLKKAEKG-GYAVGAFNC---NNMEIVQAIVAAAEAEKSPVIIQASQGAIKY-----------------AGIEYIS 63 (284)
T ss_pred cHHHHHHHHHHc-CCeEEEEEe---CCHHHHHHHHHHHHHhCCCEEEEechhHhhh-----------------CCHHHHH
Confidence 356777766544 445555553 3668888889999998888876542321111 1233345
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEe
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFT 199 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~li 199 (311)
.+++...++.++||.+.. + +....+.+..|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= --+
T Consensus 64 ~~~~~~A~~~~VPValHL--D---H~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~v 138 (284)
T PRK12857 64 AMVRTAAEKASVPVALHL--D---HGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKI 138 (284)
T ss_pred HHHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeec
Confidence 567777778899999853 1 222246888999999999988 4789887 6678888888886321 001
Q ss_pred ---------CC----CChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 200 ---------TP----TTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 200 ---------sp----~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
.. -|.++..++..+.. |...+ + +..|..-....++ .+.++++++.+++|++. |.|+.
T Consensus 139 gg~e~~~~~~~~~~~~T~pe~a~~Fv~~T-gvD~LAvaiGt~HG~y~~~p~Ld---~~~L~~i~~~~~vPLVlHGgSG~~ 214 (284)
T PRK12857 139 GGTEDDITVDEREAAMTDPEEARRFVEET-GVDALAIAIGTAHGPYKGEPKLD---FDRLAKIKELVNIPIVLHGSSGVP 214 (284)
T ss_pred CCccCCCCcccchhhcCCHHHHHHHHHHH-CCCEEeeccCccccccCCCCcCC---HHHHHHHHHHhCCCEEEeCCCCCC
Confidence 00 23445555665533 44333 2 3444332222233 36788898888999866 77776
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=+=|+|.+....
T Consensus 215 -~e~~~~ai~~Gi~KiNi~T~~~~a~ 239 (284)
T PRK12857 215 -DEAIRKAISLGVRKVNIDTNIREAF 239 (284)
T ss_pred -HHHHHHHHHcCCeEEEeCcHHHHHH
Confidence 7999999999999999999986544
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.82 E-value=9e-05 Score=67.99 Aligned_cols=77 Identities=26% Similarity=0.293 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+..+.+.+..-..+|++...+..|. +...+.++++.+.+.+|+.+|+||++.|++++++++||+=||+||..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~-----~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGR-----GDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCC-----CccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 4566777776655566899887764332 12246788888888899999999999999999999999999999987
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 111 ~~ 112 (233)
T cd04723 111 LP 112 (233)
T ss_pred cc
Confidence 65
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.6e-05 Score=69.19 Aligned_cols=78 Identities=27% Similarity=0.417 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHhCCceEEEEecCCcc-CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 202 TTPTDRMKAIVEASEGFVYLVSSIGVT-GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 202 ~t~~eri~~i~~~a~gfiY~vs~~G~T-G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
..|.+..+.+.+..-..+|++...+.. |. +...+.++++.+.+.+|+.+|+||++.|+++++++.|||-||+||
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~-----~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGR-----GSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTH-----HHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCc-----hhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 455666777755566778998876542 32 234578999999989999999999999999999999999999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+..+
T Consensus 104 ~~~~ 107 (229)
T PF00977_consen 104 EALE 107 (229)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9876
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0044 Score=58.48 Aligned_cols=202 Identities=19% Similarity=0.288 Sum_probs=126.5
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAI 127 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~ 127 (311)
....|.++.+++...+ ++|-=| .-.++.++++|...+=++ |--+..+ ..+ . +-.+++++
T Consensus 6 ~~~~fR~l~~~~~~~~----~pg~~d----~~sA~la~~aGF~al~~s---------g~~vA~s--lG~pD~~~~t~~e~ 66 (289)
T COG2513 6 PGAAFRALHASGDPLV----LPGAWD----AGSALLAERAGFKALYLS---------GAGVAAS--LGLPDLGITTLDEV 66 (289)
T ss_pred HHHHHHHHHhCCCCEE----ecCCcC----HHHHHHHHHcCCeEEEec---------cHHHHHh--cCCCccccccHHHH
Confidence 4567877777766544 344222 245677789999999885 4333321 111 1 22578999
Q ss_pred HHHHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC---------------ChhhHHHHHHHHH
Q 021527 128 LSMLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV---------------PLEETESLQKEAM 189 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl---------------p~ee~~~~~~~~~ 189 (311)
++.+++|...+++||++. ||-|+. ...+-++.+.++|+.|+.+=|- +++|...-.+.++
T Consensus 67 ~~~vrrI~~a~~lPv~vD~dtGfG~~~---nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~ 143 (289)
T COG2513 67 LADARRITDAVDLPVLVDIDTGFGEAL---NVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAV 143 (289)
T ss_pred HHHHHHHHhhcCCceEEeccCCCCcHH---HHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999998 566633 4578889999999999999552 2244333333333
Q ss_pred HcC--CCeEEEeCC---------CChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE---
Q 021527 190 KNK--IELVLFTTP---------TTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV--- 255 (311)
Q Consensus 190 ~~g--i~~I~lisp---------~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--- 255 (311)
+.- .+.++ +.- ....+|.+.+.+..-..||..... . .+.++++.+..++|+.+
T Consensus 144 ~a~~~~~fvi-~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~----------~--~e~i~~f~~av~~pl~~N~t 210 (289)
T COG2513 144 EARRDPDFVI-IARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT----------D--LEEIRAFAEAVPVPLPANIT 210 (289)
T ss_pred HhccCCCeEE-EeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCC----------C--HHHHHHHHHhcCCCeeeEee
Confidence 322 23333 221 111367777766666667765321 1 24566666665544433
Q ss_pred eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 256 GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 256 GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
-||-+-.-.+.++.+.|..-|+.|....+..
T Consensus 211 ~~g~tp~~~~~~L~~~Gv~~V~~~~~~~raa 241 (289)
T COG2513 211 EFGKTPLLTVAELAELGVKRVSYGLTAFRAA 241 (289)
T ss_pred ccCCCCCcCHHHHHhcCceEEEECcHHHHHH
Confidence 5666444457788899999999998887754
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00066 Score=69.08 Aligned_cols=168 Identities=15% Similarity=0.186 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--------C-CcEEEEec
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--------S-CPIALFTY 147 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--------~-iPiilm~Y 147 (311)
++-+++++.|++.|+|.||+|+|-..| .. ++.++++.+.. . .|.+ .+
T Consensus 106 eeKi~Ia~~L~~~GVd~IEvG~Pa~s~-----~e-----------------~e~i~~i~~~~~~~~~~~~~l~~~i-~a- 161 (503)
T PLN03228 106 PQKLEIARQLAKLRVDIMEVGFPGSSE-----EE-----------------FEAVKTIAKTVGNEVDEETGYVPVI-CG- 161 (503)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCH-----HH-----------------HHHHHHHHHhcccccccccccceEE-ee-
Confidence 678999999999999999999986443 11 22333433211 1 1322 22
Q ss_pred CcchhccCHHHHHHHHHHc----CCcEEEec----CCC------------hhhHHHHHHHHHHcCCCeEEEeCC---CCh
Q 021527 148 YNPILKRGVDNFMSTVRDI----GIRGLVVP----DVP------------LEETESLQKEAMKNKIELVLFTTP---TTP 204 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~a----GadGviip----Dlp------------~ee~~~~~~~~~~~gi~~I~lisp---~t~ 204 (311)
|... ..+.++.+.++ |++.+.+. |+- ++...+..+.++++|+..+.+..+ .++
T Consensus 162 ~~R~----~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd 237 (503)
T PLN03228 162 IARC----KKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSD 237 (503)
T ss_pred eccc----CHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccC
Confidence 2211 23355555555 55656542 222 122456777889999864444322 233
Q ss_pred HHHHHHHHHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC----CCcEEE----eeCCCCHHHHHHHHHcC
Q 021527 205 TDRMKAIVEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS----TKPVAV----GFGISKPEHVQQVAGWG 272 (311)
Q Consensus 205 ~eri~~i~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~----~~Pv~v----GfGIst~e~v~~v~~~G 272 (311)
.+.+.++++. ...-+++....| . ..|..+.++++.+++.+ ++|+-+ .+|...++.+ ..+++|
T Consensus 238 ~efl~~~~~~a~~~Gad~I~l~DTvG---~--~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANsl-aAi~aG 311 (503)
T PLN03228 238 KEFLCKILGEAIKAGATSVGIADTVG---I--NMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTI-AGICAG 311 (503)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCC---C--CCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHH-HHHHhC
Confidence 4554444433 223455555443 3 34677889999998865 255544 4566554444 445799
Q ss_pred CcEEEE
Q 021527 273 ADGVIV 278 (311)
Q Consensus 273 ADGvIV 278 (311)
||.|-+
T Consensus 312 a~~Vd~ 317 (503)
T PLN03228 312 ARQVEV 317 (503)
T ss_pred CCEEEE
Confidence 998843
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0015 Score=67.78 Aligned_cols=182 Identities=16% Similarity=0.147 Sum_probs=112.8
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe------
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT------ 146 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~------ 146 (311)
-..++..+++..|+++|++.||++-. -.... +.| +--++-++.++++++. .++++..+.
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~gg--------atfd~-~~r-----fl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~ 88 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGG--------ATFDV-CIR-----YLNEDPWERLRKLKKALPNTPLQMLLRGQNLV 88 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC--------ccchh-hcc-----cCCccHHHHHHHHHHhCCCCEEEEEecccccc
Confidence 44577899999999999999999711 00000 000 0111335667777765 467776652
Q ss_pred -cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEEEe----CCCChHHHH----HHHHHhC
Q 021527 147 -YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVLFT----TPTTPTDRM----KAIVEAS 215 (311)
Q Consensus 147 -Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~li----sp~t~~eri----~~i~~~a 215 (311)
|.| .-..-.+.|++.+.++|+|.+-+.|-.. +......+.++++|......+ +|..+.+.. +++.+..
T Consensus 89 gy~~-ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G 167 (592)
T PRK09282 89 GYRH-YPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG 167 (592)
T ss_pred cccc-ccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC
Confidence 222 1111147899999999999988876442 345667788889998654333 343334443 3333333
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
-..|++-...| . ..|..+.++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 168 ad~I~i~Dt~G---~--~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~-An~laAv~aGad~v 226 (592)
T PRK09282 168 CDSICIKDMAG---L--LTPYAAYELVKALKEEVDLPVQLHSHCTSGLAP-MTYLKAVEAGVDII 226 (592)
T ss_pred CCEEEECCcCC---C--cCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHH-HHHHHHHHhCCCEE
Confidence 34455554443 3 34677899999999988888766 455543 45666778999865
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.015 Score=55.21 Aligned_cols=207 Identities=15% Similarity=0.219 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++. +-++..|=+ .+++...-++++.++.+..+|---.|-.-.+ ...+.+.
T Consensus 5 ~~k~il~~A~~~-~yaV~AfN~---~n~e~~~avi~AAee~~sPvIiq~~~~~~~~-----------------~g~~~~~ 63 (284)
T PRK09195 5 STKQMLNNAQRG-GYAVPAFNI---HNLETMQVVVETAAELHSPVIIAGTPGTFSY-----------------AGTEYLL 63 (284)
T ss_pred cHHHHHHHHHHc-CceEEEEEe---CCHHHHHHHHHHHHHhCCCEEEEcChhHHhh-----------------CCHHHHH
Confidence 356667666555 345655553 4678888899999999988876532221111 2234456
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEe
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFT 199 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~li 199 (311)
.+++.+.++.++||.+-. + +....+.+..|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= --+
T Consensus 64 ~~~~~~A~~~~VPV~lHL--D---Hg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~v 138 (284)
T PRK09195 64 AIVSAAAKQYHHPLALHL--D---HHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRL 138 (284)
T ss_pred HHHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 788888888999999853 2 222346889999999999988 4789887 6678888888886321 001
Q ss_pred C-----------C--CChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 200 T-----------P--TTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 200 s-----------p--~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
. . -|.++..++..+. .|...+ + +..|.+-....++ .+.|+++++.+++|++. |.|+.
T Consensus 139 gg~e~~~~~~~~~~~~T~peea~~Fv~~-TgvD~LAvaiGt~HG~y~~~p~Ld---~~~L~~I~~~~~vPLVLHGgSG~~ 214 (284)
T PRK09195 139 GGQEDDLQVDEADALYTDPAQAREFVEA-TGIDSLAVAIGTAHGMYKGEPKLD---FDRLENIRQWVNIPLVLHGASGLP 214 (284)
T ss_pred cCcccCcccccccccCCCHHHHHHHHHH-HCcCEEeeccCccccccCCCCcCC---HHHHHHHHHHhCCCeEEecCCCCC
Confidence 0 0 2334555555553 344444 2 3344332222233 36788898888999866 77887
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=|=|+|.+....
T Consensus 215 -~e~~~~ai~~Gi~KiNi~T~l~~a~ 239 (284)
T PRK09195 215 -TKDIQQTIKLGICKVNVATELKIAF 239 (284)
T ss_pred -HHHHHHHHHcCCeEEEeCcHHHHHH
Confidence 6999999999999999999987433
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0033 Score=57.02 Aligned_cols=190 Identities=20% Similarity=0.272 Sum_probs=111.8
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
..+.++...++|+|.+=+-+--..| +-++.++.-+++..+.+ + ..+.++ .| -..++
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~Sp----------------R~Vs~~~a~~i~~~v~~-~-~~VgVf--~n----~~~~~ 66 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSP----------------RYVSPEQAREIASAVPK-V-KVVGVF--VN----ESIEE 66 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCC----------------CcCCHHHHHHHHHhCCC-C-CEEEEE--CC----CCHHH
Confidence 4688999999999998664322222 12455443344444433 1 134443 34 12344
Q ss_pred HHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEec-----CCccCCCC
Q 021527 159 FMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSS-----IGVTGARA 232 (311)
Q Consensus 159 fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~-----~G~TG~~~ 232 (311)
..+.+.+.+.|.|=++ |.+.+...+++... ++..+..++.....+..........-..|+... .|.||..
T Consensus 67 i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~---~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~- 142 (208)
T COG0135 67 ILEIAEELGLDAVQLHGDEDPEYIDQLKEEL---GVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQT- 142 (208)
T ss_pred HHHHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcE-
Confidence 5566788889998886 56666555555433 566555544333212111111222333444443 4677753
Q ss_pred CCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCC-cEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGA-DGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 233 ~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GA-DGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
++.. .+... ....|++..+|++ |+|+.++.+.+. .|+=|-|.+...-+ ....+.+++|++.++.
T Consensus 143 -fDW~---~l~~~--~~~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~pG-----~KD~~kv~~f~~~vk~ 207 (208)
T COG0135 143 -FDWN---LLPKL--RLSKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSPG-----IKDPAKVKAFFEAVKR 207 (208)
T ss_pred -ECHH---Hhccc--cccCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccCCC-----CCCHHHHHHHHHHHhc
Confidence 4443 23322 2467899999996 999999999988 99988887766321 2346788888888775
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00061 Score=62.32 Aligned_cols=182 Identities=23% Similarity=0.294 Sum_probs=108.0
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+.++ .+|.+++-+-+==-+-.. -.-+++++.+... +++ + .-|
T Consensus 23 Tgky~s~~~~~~av~---asg~~ivTvAlRR~~~~~----------------~~~~~~l~~l~~~----~~~--~--LPN 75 (262)
T COG2022 23 TGKYPSPAVLAEAVR---ASGSEIVTVALRRVNATR----------------PGGDGILDLLIPL----GVT--L--LPN 75 (262)
T ss_pred cCCCCCHHHHHHHHH---hcCCceEEEEEEeecccC----------------CCcchHHHHhhhc----CcE--e--CCC
Confidence 667787776665554 589999888311100000 0112344444332 222 2 124
Q ss_pred chhccCHHHHHH---HHHHcCCcEE----EecC----CC-hhhHHHHHHHHHHcCCCeEEEeCCCChH-HHHHHHHHhCC
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGL----VVPD----VP-LEETESLQKEAMKNKIELVLFTTPTTPT-DRMKAIVEASE 216 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGv----iipD----lp-~ee~~~~~~~~~~~gi~~I~lisp~t~~-eri~~i~~~a~ 216 (311)
+--.+..++-++ .+.+++-.-. +++| +| +.|..+-.+.+-+.|+.+.++++++--. +|+++ -
T Consensus 76 TaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee-----~ 150 (262)
T COG2022 76 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEE-----A 150 (262)
T ss_pred ccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHh-----c
Confidence 443344454333 3455543322 2333 22 1244445555667799888887765432 33332 4
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
|..-++..-..-|+..++.. ...|+.+++..++||+|.-||-+|.|+.++.++|+|+|.+-||+.+.
T Consensus 151 GcaavMPl~aPIGSg~G~~n--~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A 217 (262)
T COG2022 151 GCAAVMPLGAPIGSGLGLQN--PYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARA 217 (262)
T ss_pred CceEeccccccccCCcCcCC--HHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhcc
Confidence 66556554444455444432 36788888888999999999999999999999999999999999873
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.024 Score=53.88 Aligned_cols=207 Identities=17% Similarity=0.223 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++++ -++..|= ..+++...-++++.++.++.+|---.|..-.+.. ..+.+.
T Consensus 5 ~~k~lL~~A~~~~-yAV~AfN---~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~----------------~~~~~~ 64 (286)
T PRK08610 5 SMKEMLIDAKENG-YAVGQYN---LNNLEFTQAILEASQEENAPVILGVSEGAARYMS----------------GFYTVV 64 (286)
T ss_pred cHHHHHHHHHHCC-ceEEEEE---ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC----------------cHHHHH
Confidence 3567777766554 4555554 4578999999999999999987654332211111 123345
Q ss_pred HHHHHhhccCC--CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---E
Q 021527 129 SMLKEVVPQMS--CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---L 197 (311)
Q Consensus 129 ~~i~~ir~~~~--iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~ 197 (311)
.+++...++.+ +||.+-. + +..-.+++..+.++|.+.|.+ ..+|+|| ..++.+.++..|+.+= -
T Consensus 65 ~~~~~~A~~~~~~vPV~lHL--D---Hg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG 139 (286)
T PRK08610 65 KMVEGLMHDLNITIPVAIHL--D---HGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELG 139 (286)
T ss_pred HHHHHHHHHcCCCCCEEEEC--C---CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 57777666655 8999853 1 222356788999999999988 4688887 5678888888886321 0
Q ss_pred EeC-----------CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 198 FTT-----------PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 198 lis-----------p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
.+. .-|.++..++..+. .|...+ + +..|.+-....++ .+.++++++.+++|++. |.|+.
T Consensus 140 ~vgg~ed~~~~~~~~yT~peea~~Fv~~-TgvD~LAvaiGt~HG~Y~~~p~Ld---~~~L~~I~~~~~vPLVLHGgSG~~ 215 (286)
T PRK08610 140 TVGGQEDDVVADGIIYADPKECQELVEK-TGIDALAPALGSVHGPYKGEPKLG---FKEMEEIGLSTGLPLVLHGGTGIP 215 (286)
T ss_pred ccCCccCCCCCcccccCCHHHHHHHHHH-HCCCEEEeeccccccccCCCCCCC---HHHHHHHHHHHCCCEEEeCCCCCC
Confidence 110 12444555566553 344444 3 3444332222222 46788888888999866 67776
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.|+++++.+.|.-=+=|+|.+...
T Consensus 216 -~e~~~~ai~~GI~KiNi~T~l~~a 239 (286)
T PRK08610 216 -TKDIQKAIPFGTAKINVNTENQIA 239 (286)
T ss_pred -HHHHHHHHHCCCeEEEeccHHHHH
Confidence 599999999999999999998543
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00066 Score=68.67 Aligned_cols=127 Identities=20% Similarity=0.205 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE-E--------ec
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL-V--------SS 224 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~-v--------s~ 224 (311)
.+-++.+.++|+|.+.+ |... +...++.+.+++...+.-.++..-.+.+-.+.+.+. |+.++ | +.
T Consensus 227 ~~ra~~Lv~aGVd~i~~-D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~--G~d~i~vg~g~Gs~~tt 303 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVI-DTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA--GANIIKVGVGPGAMCTT 303 (475)
T ss_pred HHHHHHHHHhCCCEEEE-eCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh--CCCEEEECCcCCccccC
Confidence 35666788899999655 5443 335566777777633322223323334544455443 43333 1 12
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 225 IGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.++||........+.+..+..++. ++||++.+||+++.|+.+.+.+|||.|.+||.|.-.-+
T Consensus 304 r~~~~~g~~~~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~e 365 (475)
T TIGR01303 304 RMMTGVGRPQFSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYE 365 (475)
T ss_pred ccccCCCCchHHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhccccc
Confidence 234443222222344444444554 89999999999999999999999999999999976553
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0044 Score=57.53 Aligned_cols=192 Identities=23% Similarity=0.286 Sum_probs=118.9
Q ss_pred HHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 55 TRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 55 ~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
++.-++|+..+-.++....| ..++.+...|.|.|.|+...+- . +.+++..++...
T Consensus 4 k~~l~~g~~~~g~~~~~~~p------~~~e~~~~~g~D~v~iDlEH~~--~-----------------~~~~~~~~~~a~ 58 (249)
T TIGR02311 4 KQALKEGQPQIGLWLGLADP------YAAEICAGAGFDWLLIDGEHAP--N-----------------DVRTILSQLQAL 58 (249)
T ss_pred HHHHHCCCceEEEEEeCCCc------HHHHHHHhcCCCEEEEeccCCC--C-----------------CHHHHHHHHHHH
Confidence 33334677777778887777 6778888999999999865542 1 223334455444
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHc--C-------------------
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKN--K------------------- 192 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~--g------------------- 192 (311)
+. .....++-.-.+ . ...++.+.+.|++||++|..- .|+++++.+.++-. |
T Consensus 59 ~~-~g~~~~VRv~~~-----~-~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~ 131 (249)
T TIGR02311 59 AP-YPSSPVVRPAIG-----D-PVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPD 131 (249)
T ss_pred Hh-cCCCcEEECCCC-----C-HHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHH
Confidence 32 233455544322 1 237888999999999999763 35666677766511 1
Q ss_pred --------CCeEEEeCCCChH--HHHHHHHHhCCc--eEEEE-----ecCCccCCCCCCCchHHHHHHHHhhcC---CCc
Q 021527 193 --------IELVLFTTPTTPT--DRMKAIVEASEG--FVYLV-----SSIGVTGARASISGHVQTLLREIKESS---TKP 252 (311)
Q Consensus 193 --------i~~I~lisp~t~~--eri~~i~~~a~g--fiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~~---~~P 252 (311)
+-++.++ .|+. +.+.+|++. .| .+++. ...|..|.. ..+++.+.++++++.+ .++
T Consensus 132 y~~~~n~~~~vi~~I--Et~~av~n~~eI~a~-~gvd~l~~G~~DLs~slG~~~~~--~~~~~~~a~~~v~~~~~~a~~~ 206 (249)
T TIGR02311 132 YLQQADEEICVLLQV--ETREALDNLEEIAAV-EGVDGVFIGPADLAASMGHLGNP--SHPEVQAAIDDAIERIKAAGKA 206 (249)
T ss_pred HHHHhhhceEEEEEe--cCHHHHHHHHHHHCC-CCCcEEEECHHHHHHhcCCCCCC--CChHHHHHHHHHHHHHHHcCCc
Confidence 1122333 3433 667777763 44 44553 134554432 2345566666666653 343
Q ss_pred EEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 253 VAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 253 v~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.|.-..++++++...+.|++-+++|+-..-.
T Consensus 207 --~Gi~~~~~~~~~~~~~~G~~~~~~~~D~~~l 237 (249)
T TIGR02311 207 --AGILTADPKLARQYLKLGALFVAVGVDTTLL 237 (249)
T ss_pred --eeecCCCHHHHHHHHHcCCCEEEEchHHHHH
Confidence 4555578999999999999999999765543
|
This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0028 Score=60.42 Aligned_cols=180 Identities=19% Similarity=0.206 Sum_probs=113.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.|-+.--- -+++. .|.++-.++++.+++. -++|++.-+-.|
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~Gtt----GE~~~------------Ls~eEr~~v~~~~v~~~~grvpviaG~g~~ 83 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTT----GESPT------------LTLEERKEVLEAVVEAVGGRVPVIAGVGSN 83 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCC----ccchh------------cCHHHHHHHHHHHHHHHCCCCcEEEecCCC
Confidence 66788999999999999999999884110 01111 3556667777777664 368988876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecC-----CChhh-HHHHHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEE-TESLQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee-~~~~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+++.|+||+++.- .+.++ ...|+..+.+.++..+++=.| +.+.+.+.++++ -..+
T Consensus 84 ~t~--eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~-~~ni 160 (299)
T COG0329 84 STA--EAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE-HPNI 160 (299)
T ss_pred cHH--HHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc-CCCE
Confidence 221 123466788999999998831 12244 445777788888887765433 334577776655 3344
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCC-cEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~-Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+.+ .-.|| + .+.+.+++..+.. ...+..|-. +.+...+.+|+||+|-|++=+
T Consensus 161 vgi---Kd~~g-------d-~~~~~~~~~~~~~~~f~v~~G~d--~~~~~~~~~G~~G~is~~~N~ 213 (299)
T COG0329 161 VGV---KDSSG-------D-LDRLEEIIAALGDRDFIVLSGDD--ELALPALLLGADGVISVTANV 213 (299)
T ss_pred EEE---EeCCc-------C-HHHHHHHHHhcCccCeeEEeCch--HHHHHHHhCCCCeEEeccccc
Confidence 322 11122 1 2456666665544 677888875 444455559999999887644
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0019 Score=65.58 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=113.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe-------
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT------- 146 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~------- 146 (311)
..++.+.+++.|+++|++.||++ |...-.++.|-+ + ++=.+.++++|+. .+.|+..+.
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~---------GGatfd~~~rfl--~---Edpwerlr~lr~~~~nt~lqmL~Rg~N~vG 90 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECW---------GGATFDACIRFL--N---EDPWERLRTFRKLMPNSRLQMLLRGQNLLG 90 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEec---------CCcchhhhhccc--C---CCHHHHHHHHHHhCCCCeEEEEEcccccCC
Confidence 45778999999999999999997 222111222211 1 1224566666654 567776553
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEE----EeCCCChHHHHHHHHHh----CC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVL----FTTPTTPTDRMKAIVEA----SE 216 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~----lisp~t~~eri~~i~~~----a~ 216 (311)
|.+ .-.--.+.|++.+.++|+|.+-+-|-.. +......+.+++.|..... .++|..+.+...++++. .-
T Consensus 91 y~~-y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Ga 169 (499)
T PRK12330 91 YRH-YEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGA 169 (499)
T ss_pred ccC-cchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 332 1111136799999999999998876443 3455667777888874422 23666666664444442 22
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.-|++... +|. ..|..+.++++.+|+.+ ++||-+ .+|... .+.-...++|||.|
T Consensus 170 d~I~IkDt---aGl--l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~-An~laAieAGad~v 229 (499)
T PRK12330 170 DSICIKDM---AAL--LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTL-VSLMKAIEAGVDVV 229 (499)
T ss_pred CEEEeCCC---ccC--CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHH-HHHHHHHHcCCCEE
Confidence 34555443 333 34667889999999987 688876 445654 45666778999865
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.027 Score=53.47 Aligned_cols=210 Identities=19% Similarity=0.279 Sum_probs=134.3
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
.++.+.+++.++++ -++..|= ..+++...-++++.++.+..+|-=-. -..+... ..+.+
T Consensus 3 v~~~~ll~~A~~~~-yAV~AfN---~~n~e~~~avi~AAe~~~sPvIlq~~--------~~~~~~~---------~~~~~ 61 (287)
T PF01116_consen 3 VNMKELLKKAKEGG-YAVPAFN---VYNLETARAVIEAAEELNSPVILQIS--------PSEVKYM---------GLEYL 61 (287)
T ss_dssp HHHHHHHHHHHHHT--BEEEEE----SSHHHHHHHHHHHHHTTS-EEEEEE--------HHHHHHH---------HHHHH
T ss_pred ccHHHHHHHHHHCC-CeEEEEe---eCCHHHHHHHHHHHHHhCCCEEEEcc--------hhhhhhh---------hHHHH
Confidence 35677777776654 4555555 45778999999999999888754320 1111111 23455
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE----
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL---- 197 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~---- 197 (311)
..+++.+.++.++||.+-. + +....+++.+|.+.|.+.|.+ ..+|+|| ..++.+.++.+|+.+=-
T Consensus 62 ~~~~~~~a~~~~vPValHL--D---H~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~ 136 (287)
T PF01116_consen 62 AAMVKAAAEEASVPVALHL--D---HGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGH 136 (287)
T ss_dssp HHHHHHHHHHSTSEEEEEE--E---EE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESB
T ss_pred HHHHHHHHHHcCCCEEeec--c---cCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeee
Confidence 6788888888999998853 1 222256889999999999988 5899987 67788999999864211
Q ss_pred Ee-------C------CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE--ee
Q 021527 198 FT-------T------PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESS-TKPVAV--GF 257 (311)
Q Consensus 198 li-------s------p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v--Gf 257 (311)
+. . --|.++..++..+.. |.+.+ + +..|.+-.. ..|.-..+.|+++++.+ ++|++. |.
T Consensus 137 i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~T-gvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~~iPLVlHGgS 214 (287)
T PF01116_consen 137 IGGKEDGIESEEETESLYTDPEEAKEFVEET-GVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVPDIPLVLHGGS 214 (287)
T ss_dssp SSSSCTTCSSSTT-TTCSSSHHHHHHHHHHH-TTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHHTSEEEESSCT
T ss_pred eeccCCCccccccccccccCHHHHHHHHHHh-CCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcCCCCEEEECCC
Confidence 00 1 113445555555533 33334 3 233322220 01222347899999999 999877 77
Q ss_pred CCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 258 GISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 258 GIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|+. .|++++..+.|.-=+=|||.+....
T Consensus 215 G~~-~e~~~~ai~~Gi~KiNi~T~~~~a~ 242 (287)
T PF01116_consen 215 GLP-DEQIRKAIKNGISKINIGTELRRAF 242 (287)
T ss_dssp TS--HHHHHHHHHTTEEEEEESHHHHHHH
T ss_pred CCC-HHHHHHHHHcCceEEEEehHHHHHH
Confidence 776 6999999999999999999988654
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0026 Score=60.16 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=72.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++-++.+.+.|||+|.+|.+.+-|-++--..+. .++-+...++.+++. .+||-+-+|.
T Consensus 23 ~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~ee----------E~~Rv~pvI~~l~~~-~~~ISIDT~~------ 85 (279)
T PRK13753 23 DPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPAD----------EIRRIAPLLDALSDQ-MHRVSIDSFQ------ 85 (279)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHH----------HHHHHHHHHHHHHhC-CCcEEEECCC------
Confidence 45788999999999999999999999988655210110 112234677777764 6789888874
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis 200 (311)
.+-++.+.++||| ++.|+.-....++.+.+.+++...|++-+
T Consensus 86 --~~va~~al~aGad--iINDVsg~~d~~~~~vva~~~~~vVlmH~ 127 (279)
T PRK13753 86 --PETQRYALKRGVG--YLNDIQGFPDPALYPDIAEADCRLVVMHS 127 (279)
T ss_pred --HHHHHHHHHcCCC--EEEeCCCCCchHHHHHHHHcCCCEEEEec
Confidence 3456778899999 46665433334556677888888776544
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.04 Score=52.42 Aligned_cols=208 Identities=20% Similarity=0.250 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++++ -++..|=+ .+++...-++++.++.++.+|---.|....+..| .+.+.
T Consensus 5 ~~k~iL~~A~~~~-yAV~AfN~---~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g----------------~~~~~ 64 (288)
T TIGR00167 5 DVKELLQDAKEEG-YAIPAFNI---NNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAG----------------LGAIS 64 (288)
T ss_pred cHHHHHHHHHHCC-ceEEEEEE---CCHHHHHHHHHHHHHHCCCEEEECCcchhhccCC----------------HHHHH
Confidence 3566777765554 45656653 4688999999999999998876543332222122 33445
Q ss_pred HHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---E
Q 021527 129 SMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---L 197 (311)
Q Consensus 129 ~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~ 197 (311)
.+++...++. ++||.+.. -+..-.+.+.++.++|.+.|.+ ..+|+|| ..++.+.++..|+.+= -
T Consensus 65 ~~~~~~a~~~~~~VPV~lHL-----DHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG 139 (288)
T TIGR00167 65 AMVKAMSEAYPYGVPVALHL-----DHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELG 139 (288)
T ss_pred HHHHHHHHhccCCCcEEEEC-----CCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5666666666 89999853 1222357899999999999988 4688887 5678888888887421 0
Q ss_pred Ee-------------CCCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCC-CCchHHHHHHHHhhcCCCcEEE--ee
Q 021527 198 FT-------------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARAS-ISGHVQTLLREIKESSTKPVAV--GF 257 (311)
Q Consensus 198 li-------------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~-~~~~~~~~l~~vk~~~~~Pv~v--Gf 257 (311)
.+ ..-|.++..++..+.. |...+ + +..|.+-.... ++ .+.++++++.+++|++. |.
T Consensus 140 ~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T-gvD~LAvaiGt~HG~y~~~p~~Ld---~~~L~~I~~~v~vPLVlHGgS 215 (288)
T TIGR00167 140 TLGGEEDGVSVADESALYTDPEEAKEFVKLT-GVDSLAAAIGNVHGVYKGEPKGLD---FERLEEIQKYVNLPLVLHGGS 215 (288)
T ss_pred eccCccCCcccccccccCCCHHHHHHHHhcc-CCcEEeeccCccccccCCCCCccC---HHHHHHHHHHhCCCEEEeCCC
Confidence 11 1123345555665533 44444 3 33443321111 22 36799999989999876 67
Q ss_pred CCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 258 GISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 258 GIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|++ .|+++++.+.|.-=+=|+|.+....
T Consensus 216 G~~-~e~~~~ai~~Gi~KiNi~T~l~~a~ 243 (288)
T TIGR00167 216 GIP-DEEIKKAISLGVVKVNIDTELQIAF 243 (288)
T ss_pred CCC-HHHHHHHHHcCCeEEEcChHHHHHH
Confidence 775 6999999999999999999985433
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00027 Score=64.96 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+..+.+.+..-..+|++...+..|.. + ..+.++++.+....|+.+|+||+|.|+++++++.|||=|||||..
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~~~~----~-n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAEGVG----N-NEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcCCCc----c-hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchh
Confidence 46677776665444458998877654322 1 236788887743359999999999999999999999999999988
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
++
T Consensus 106 ~~ 107 (232)
T PRK13586 106 FT 107 (232)
T ss_pred hC
Confidence 76
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0021 Score=65.13 Aligned_cols=140 Identities=26% Similarity=0.442 Sum_probs=97.4
Q ss_pred cCcch---hccCHHHHHHHHHHcC--CcEEEec-CCC-hhhHHHHHHHHHHcCCCeEEEeCCCChHHH--HHHHHHhCCc
Q 021527 147 YYNPI---LKRGVDNFMSTVRDIG--IRGLVVP-DVP-LEETESLQKEAMKNKIELVLFTTPTTPTDR--MKAIVEASEG 217 (311)
Q Consensus 147 Y~n~i---~~~g~~~fi~~~~~aG--adGviip-Dlp-~ee~~~~~~~~~~~gi~~I~lisp~t~~er--i~~i~~~a~g 217 (311)
|.||. ++.|-.+.++++...| +|||.|. .+| .||+.+|.+.+...|+..+.| -|.|.++. .-.|++...-
T Consensus 98 fldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~f-KPGtIeqI~svi~IAka~P~ 176 (717)
T COG4981 98 FLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAF-KPGTIEQIRSVIRIAKANPT 176 (717)
T ss_pred EechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEe-cCCcHHHHHHHHHHHhcCCC
Confidence 56764 4667688999998888 5899883 222 378899999999889987775 67775431 3345555455
Q ss_pred e-EEEEecCCccCCCCC---CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH------cC-----CcEEEEhhHh
Q 021527 218 F-VYLVSSIGVTGARAS---ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG------WG-----ADGVIVGSAM 282 (311)
Q Consensus 218 f-iY~vs~~G~TG~~~~---~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~------~G-----ADGvIVGSai 282 (311)
| |.+.=--|..|.+.+ ++..+.....++|..-|+-+|+|+||-+|++....+. +| .||+.|||+.
T Consensus 177 ~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaa 256 (717)
T COG4981 177 FPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAA 256 (717)
T ss_pred CceEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhH
Confidence 5 333212234454443 3444556677888888999999999999999987661 22 6999999998
Q ss_pred hchhh
Q 021527 283 VKLLG 287 (311)
Q Consensus 283 v~~~~ 287 (311)
+-.-+
T Consensus 257 MatKE 261 (717)
T COG4981 257 MATKE 261 (717)
T ss_pred Hhhhh
Confidence 86543
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00018 Score=67.28 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=59.2
Q ss_pred CCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 200 TPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 200 sp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+...|.+..+...+..-..+=+|...| |.. .+ .+.++++++ +++||.+|+||++ |+++++++.|||=||||
T Consensus 41 ~~~dP~~~A~~~~~~Ga~~lHvVDLdg--g~~--~n---~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 41 SDKSAAEFAEMYKRDGLTGGHVIMLGA--DDA--SL---AAALEALRA-YPGGLQVGGGVNS-ENAMSYLDAGASHVIVT 111 (262)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCC--CCc--cc---HHHHHHHHh-CCCCEEEeCCccH-HHHHHHHHcCCCEEEEc
Confidence 345677777777664444566687755 322 11 467888888 8899999999996 99999999999999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
|+.++
T Consensus 112 T~Av~ 116 (262)
T PLN02446 112 SYVFR 116 (262)
T ss_pred hHHHh
Confidence 99887
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00093 Score=65.04 Aligned_cols=130 Identities=22% Similarity=0.300 Sum_probs=87.3
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHc----------CCCeEEEeCCCC-hHH
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKN----------KIELVLFTTPTT-PTD 206 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~----------gi~~I~lisp~t-~~e 206 (311)
+++|++-- -++++. -.++...+...|.=|+|--..++|+..+..+.++++ .+-.-.-+.+.. ..+
T Consensus 36 l~iPivsa-~MDtVt---e~~mAiama~~Gglgvih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~e 111 (352)
T PF00478_consen 36 LKIPIVSA-PMDTVT---ESEMAIAMARLGGLGVIHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFE 111 (352)
T ss_dssp ESSSEEE--SSTTTS---SHHHHHHHHHTTSEEEEESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHH
T ss_pred ecCceEec-Cccccc---hHHHHHHHHHhcCCceecCCCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHH
Confidence 67898772 234442 246788888889999988899998877666666543 222222234432 458
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
|.+.+.+..-.++.+-+..| -...+.+.++++|+.. ++||+ +++|-|+|.++.+.++|||+|-||
T Consensus 112 r~~~L~~agvD~ivID~a~g-------~s~~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 112 RAEALVEAGVDVIVIDSAHG-------HSEHVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHTT-SEEEEE-SST-------TSHHHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHcCCCEEEccccCc-------cHHHHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 88888775445554433333 2345678899999976 48884 667999999999999999999998
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.002 Score=60.84 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=99.1
Q ss_pred ChhhHHHHHHHH-HHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc------cCCCcEEEEec
Q 021527 75 DLSTTAEALKLL-DSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP------QMSCPIALFTY 147 (311)
Q Consensus 75 ~~~~~~e~~~~L-~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~------~~~iPiilm~Y 147 (311)
+.++-+++++.| ++.|+|.||+|.|-..| . -. +.++++.+ ... .+.+++.
T Consensus 17 s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~---~--e~-----------------~av~~~~~~~~~~~~~~-~~~~~a~ 73 (280)
T cd07945 17 SPSEKLNIAKILLQELKVDRIEVASARVSE---G--EF-----------------EAVQKIIDWAAEEGLLD-RIEVLGF 73 (280)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEecCCCCCH---H--HH-----------------HHHHHHHHHhhhhcccc-CcEEEEe
Confidence 346778999997 67799999999874333 1 11 12222211 111 2233222
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEec----C--------CChhh----HHHHHHHHHHcCCCeEEEeCC-----CChHH
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVP----D--------VPLEE----TESLQKEAMKNKIELVLFTTP-----TTPTD 206 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviip----D--------lp~ee----~~~~~~~~~~~gi~~I~lisp-----~t~~e 206 (311)
. + .++-++.+.++|++.+.+. | ...+| ..+..+.++++|++..+.+.. .++.+
T Consensus 74 ~-~-----~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~ 147 (280)
T cd07945 74 V-D-----GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPD 147 (280)
T ss_pred c-C-----cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHH
Confidence 1 1 1456788999999987763 1 12233 455678889999986665542 34556
Q ss_pred HHHHHHHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 207 RMKAIVEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 207 ri~~i~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++.++++. .-.-+++... +|. ..|..+.++++.+|+.. ++|+-+ .+|... .+.-..+++|||.+
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT---~G~--~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~-AN~laA~~aGa~~v 220 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDT---LGI--LSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAV-ANVLAAVKAGIKGL 220 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCC---CCC--CCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHH-HHHHHHHHhCCCEE
Confidence 65555443 2233555543 443 34677899999998865 467655 344543 44556677999865
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0024 Score=60.70 Aligned_cols=182 Identities=18% Similarity=0.273 Sum_probs=111.8
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCC------------CCCCC----CC--hHHH----H---H
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVP------------YSDPL----AD--GPVI----Q---A 112 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~P------------fsDP~----aD--Gp~I----q---~ 112 (311)
.+-+.|-.|+ |+|.+-+.+.++..+++|+..|-+ +.| |+.|- .+ |+.- . .
T Consensus 120 ~~~rwfQLYv---ykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~s 196 (363)
T KOG0538|consen 120 PGIRWFQLYV---YKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDS 196 (363)
T ss_pred CCcEEEEEEe---cCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccch
Confidence 3455677788 999999999999999999999887 222 34443 11 1100 0 0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcC
Q 021527 113 AATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK 192 (311)
Q Consensus 113 a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~g 192 (311)
....+...-+...-.-+.++.+|..++.||++-|-.+ .+..+.+.+.|++|+|+.+ ||
T Consensus 197 g~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt-------~eDA~~Ave~G~~GIIVSN---------------HG 254 (363)
T KOG0538|consen 197 GLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLT-------GEDARKAVEAGVAGIIVSN---------------HG 254 (363)
T ss_pred hhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecc-------cHHHHHHHHhCCceEEEeC---------------CC
Confidence 0001111111111123567788888999999987544 3567788889999988863 22
Q ss_pred CCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC
Q 021527 193 IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG 272 (311)
Q Consensus 193 i~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G 272 (311)
=...- ..|.| .+-+. |.++-+.. .+||...+||++-.||-+.+..|
T Consensus 255 gRQlD-~vpAt-I~~L~------------------------------Evv~aV~~--ri~V~lDGGVR~G~DVlKALALG 300 (363)
T KOG0538|consen 255 GRQLD-YVPAT-IEALP------------------------------EVVKAVEG--RIPVFLDGGVRRGTDVLKALALG 300 (363)
T ss_pred ccccC-cccch-HHHHH------------------------------HHHHHhcC--ceEEEEecCcccchHHHHHHhcc
Confidence 11110 12222 12222 22333322 48999999999999999999999
Q ss_pred CcEEEEhhHhhchhhhcCCchhHHHHHHHH
Q 021527 273 ADGVIVGSAMVKLLGEAQSPEEGLKELEKF 302 (311)
Q Consensus 273 ADGvIVGSaiv~~~~~~~~~~~~~~~~~~~ 302 (311)
|-||.||--++-.+.-. .+.+++++.+.
T Consensus 301 Ak~VfiGRP~v~gLA~~--Ge~GV~~vl~i 328 (363)
T KOG0538|consen 301 AKGVFIGRPIVWGLAAK--GEAGVKKVLDI 328 (363)
T ss_pred cceEEecCchheeeccc--cchhHHHHHHH
Confidence 99999998888777432 23344444443
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00082 Score=68.07 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=79.2
Q ss_pred HHHHHHHHcCCcEEEecCCChh---hHHHHHHHHHHcCCCeEEEe-CCCChHHHHHHHHHhCCceEEEE---------ec
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLE---ETESLQKEAMKNKIELVLFT-TPTTPTDRMKAIVEASEGFVYLV---------SS 224 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~e---e~~~~~~~~~~~gi~~I~li-sp~t~~eri~~i~~~a~gfiY~v---------s~ 224 (311)
+.++.+.+.|+|.+ +.|.... ...++.+.+++.--+.-++. .-.|. +-.+.+.+ .|+..+- +.
T Consensus 230 ~~a~~Lv~aGvd~i-~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~-~~a~~l~~--aGad~v~vgig~gsictt 305 (479)
T PRK07807 230 AKARALLEAGVDVL-VVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTA-EGTRDLVE--AGADIVKVGVGPGAMCTT 305 (479)
T ss_pred HHHHHHHHhCCCEE-EEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCH-HHHHHHHH--cCCCEEEECccCCccccc
Confidence 45667788999995 5565543 35567777777533333333 33343 44334434 3444442 23
Q ss_pred CCccCCCCCCCchHHHHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 225 IGVTGARASISGHVQTLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
.++||... |. ...+.++.+ ..++||++.+||+++.|+.+.+.+|||+|.+||.|...-+.
T Consensus 306 ~~~~~~~~---p~-~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Es 368 (479)
T PRK07807 306 RMMTGVGR---PQ-FSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYES 368 (479)
T ss_pred ccccCCch---hH-HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccC
Confidence 34555321 22 344555555 45899999999999999999999999999999999876643
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.035 Score=52.46 Aligned_cols=204 Identities=18% Similarity=0.247 Sum_probs=131.6
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSML 131 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i 131 (311)
+.++..+++ +-++..|= -.+++...-++++.++.+..+|---.|-.-.+ ...+.+..++
T Consensus 3 ~lL~~A~~~-~yaV~AfN---~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~-----------------~~~~~~~~~~ 61 (276)
T cd00947 3 ELLKKAREG-GYAVGAFN---INNLETLKAILEAAEETRSPVILQISEGAIKY-----------------AGLELLVAMV 61 (276)
T ss_pred HHHHHHHHC-CceEEEEe---eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhh-----------------CCHHHHHHHH
Confidence 445554444 34555555 34678888899999999988865432211111 1234456677
Q ss_pred HHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEeC--
Q 021527 132 KEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFTT-- 200 (311)
Q Consensus 132 ~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~lis-- 200 (311)
+.+.++.++||.+.. + +.-..+++..+.++|.+.|.+ ..+|+|| ..++.+.++..|+.+= --+.
T Consensus 62 ~~~a~~~~VPV~lHL--D---H~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~ 136 (276)
T cd00947 62 KAAAERASVPVALHL--D---HGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGE 136 (276)
T ss_pred HHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc
Confidence 788888899999963 1 221246888999999999988 4788887 6778888998887421 1110
Q ss_pred ---------CCChHHHHHHHHHhCCceEEE-E---ecCCccCC-CCCCCchHHHHHHHHhhcCCCcEEE--eeCCCCHHH
Q 021527 201 ---------PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGA-RASISGHVQTLLREIKESSTKPVAV--GFGISKPEH 264 (311)
Q Consensus 201 ---------p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~-~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst~e~ 264 (311)
--|.++..++..+.. |...+ + +..|..-. ...++ .+.|+++++.+++|++. |.|+. .|+
T Consensus 137 e~~~~~~~~~~T~pe~a~~Fv~~T-gvD~LAvsiGt~HG~Y~~~~p~L~---~~~L~~i~~~~~vPLVlHGgSG~~-~e~ 211 (276)
T cd00947 137 EDGVVGDEGLLTDPEEAEEFVEET-GVDALAVAIGTSHGAYKGGEPKLD---FDRLKEIAERVNVPLVLHGGSGIP-DEQ 211 (276)
T ss_pred cCCcccccccCCCHHHHHHHHHHH-CCCEEEeccCccccccCCCCCccC---HHHHHHHHHHhCCCEEEeCCCCCC-HHH
Confidence 023345555555543 43344 3 33443322 22233 36788998888999866 66675 699
Q ss_pred HHHHHHcCCcEEEEhhHhhchh
Q 021527 265 VQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 265 v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+++..+.|.-=+=|+|.+....
T Consensus 212 ~~~ai~~Gi~KiNi~T~l~~a~ 233 (276)
T cd00947 212 IRKAIKLGVCKININTDLRLAF 233 (276)
T ss_pred HHHHHHcCCeEEEeChHHHHHH
Confidence 9999999999999999886644
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00048 Score=69.81 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCC--
Q 021527 158 NFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA-- 230 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~-- 230 (311)
+-++.+.++|+|.+ +.|.+. +...+..+.+++. ++.++ .-.-.| .+-...+.+. |+.++.- |+++.
T Consensus 231 e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~~~p~~~vi-~g~v~t-~e~a~~l~~a--Gad~i~v--g~g~gs~ 303 (486)
T PRK05567 231 ERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKAKYPDVQII-AGNVAT-AEAARALIEA--GADAVKV--GIGPGSI 303 (486)
T ss_pred HHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHhhCCCCCEE-EeccCC-HHHHHHHHHc--CCCEEEE--CCCCCcc
Confidence 46677899999965 555432 2334444555543 33322 223333 3444444443 3333311 22211
Q ss_pred ---C--CCCCchHHHHHHHHhhc---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 231 ---R--ASISGHVQTLLREIKES---STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 231 ---~--~~~~~~~~~~l~~vk~~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+ .+......+.+.++++. .++||++.+||+++.|+.+.+.+|||.|.+||+|.+..+
T Consensus 304 ~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e 368 (486)
T PRK05567 304 CTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEE 368 (486)
T ss_pred ccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccccc
Confidence 1 12211223455555443 479999999999999999999999999999999998764
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0074 Score=57.27 Aligned_cols=157 Identities=11% Similarity=0.122 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC------------------CChhhHHH
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD------------------VPLEETES 183 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD------------------lp~ee~~~ 183 (311)
.++++.++.++.|...+++||++..-.. .-...+.+.++.+.++|+.|+.+=| ++.||..+
T Consensus 61 ~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~ 139 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCG 139 (285)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHH
Confidence 5888999999999999999998874222 1112335668889999999999933 45666555
Q ss_pred HHHHHHHc--CCCeEEEeC------CCChH---HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CC
Q 021527 184 LQKEAMKN--KIELVLFTT------PTTPT---DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TK 251 (311)
Q Consensus 184 ~~~~~~~~--gi~~I~lis------p~t~~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~ 251 (311)
-.+.+++. +-+.++..- ....+ +|.+.+.+..-..+|+.. +. ....++.++.++++... ++
T Consensus 140 kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--~~-----~~~~ei~~~~~~~~~~~p~~ 212 (285)
T TIGR02320 140 KIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--RK-----KDPDEILEFARRFRNHYPRT 212 (285)
T ss_pred HHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--CC-----CCHHHHHHHHHHhhhhCCCC
Confidence 44444443 444443321 11122 566666665455556541 11 11234555566555422 56
Q ss_pred cEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 252 Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|+++--+-.-.-.++++.++|+.-|+.|+.+.+..
T Consensus 213 pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~aa 247 (285)
T TIGR02320 213 PLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRAA 247 (285)
T ss_pred CEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHHH
Confidence 87653321111246788889999999998887644
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=59.71 Aligned_cols=161 Identities=18% Similarity=0.245 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cCCCcEEEEecCcchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~~iPiilm~Y~n~i~~~g 155 (311)
+...+.++.+.+.|||+|.+|.-.+-|.+..---+.- ++.+...++.+++ ..++|+-+-+|.-
T Consensus 19 ~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE----------~~rl~~~l~~i~~~~~~~plSIDT~~~------ 82 (210)
T PF00809_consen 19 DEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEE----------MERLVPVLQAIREENPDVPLSIDTFNP------ 82 (210)
T ss_dssp HHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHH----------HHHHHHHHHHHHHHHTTSEEEEEESSH------
T ss_pred HHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHH----------HHHHHHHHHHHhccCCCeEEEEECCCH------
Confidence 3456668899999999999999888887743222222 2345667777776 6789999998742
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCC-------CChHHH------HHHHHHh------CC
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTP-------TTPTDR------MKAIVEA------SE 216 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp-------~t~~er------i~~i~~~------a~ 216 (311)
+-++.+.+.|++-+.-.. ..+...++.+.+++||...|.+.+. .+++.| +...... ..
T Consensus 83 --~v~~~aL~~g~~~ind~~-~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~ 159 (210)
T PF00809_consen 83 --EVAEAALKAGADIINDIS-GFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKA 159 (210)
T ss_dssp --HHHHHHHHHTSSEEEETT-TTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHcCcceEEecc-cccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHc
Confidence 345566666999755432 2222556778889999987776543 223322 2111111 12
Q ss_pred c----eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEee
Q 021527 217 G----FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGF 257 (311)
Q Consensus 217 g----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGf 257 (311)
| -+|+-...|. +.....+-.+.+.++++++..+.|+++|.
T Consensus 160 Gi~~~~Ii~DPgigf-~~~~~~~~~~l~~i~~~~~~~~~p~l~~~ 203 (210)
T PF00809_consen 160 GIPRERIILDPGIGF-GKDPEQNLELLRNIEELKELFGYPILVGG 203 (210)
T ss_dssp T--GGGEEEETTTTS-STTHHHHHHHHHTHHHHHTTSSSEBEEEE
T ss_pred CCCHHHEeeccccCc-CCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3 4788777765 32222233444556666666578876653
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00095 Score=66.30 Aligned_cols=179 Identities=20% Similarity=0.341 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+.-+++++.|++.|+|.||+|+|.+.| + -++.++.+.. +.++.+.+-+ .-....
T Consensus 23 ~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~---~-------------------~~~~~~~i~~--~~~~~~~~~~-~~~~~~ 77 (409)
T COG0119 23 VEEKIRIAKALDDLGVDYIEAGFPVASP---G-------------------DFEFVRAIAE--KAGLFICALI-AALARA 77 (409)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcCCh---h-------------------hHHHHHHHHH--hcCcccchhh-hhhHHh
Confidence 4677899999999999999999999765 2 1334444442 2222111100 001112
Q ss_pred HHHHHHHHHHcCCcEEEec----CCC--------hhh----HHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHhCC-
Q 021527 156 VDNFMSTVRDIGIRGLVVP----DVP--------LEE----TESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEASE- 216 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip----Dlp--------~ee----~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~a~- 216 (311)
.++-++.+.++|++.+.+- |+. .+| +.+..+.++.+|++..+.. .-.++.+.+.++.+.+.
T Consensus 78 ~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~ 157 (409)
T COG0119 78 IKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIE 157 (409)
T ss_pred HHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHH
Confidence 3446778899999987662 222 222 5567788899998877433 22444555545544422
Q ss_pred ---ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC--CcEEE----eeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 217 ---GFVYLVSSIGVTGARASISGHVQTLLREIKESST--KPVAV----GFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 217 ---gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~v----GfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
..|++....|+ ..|..+.+.++.+++..+ .|+-+ .+|--.++.+ ..+++|||-| .+-+.-++
T Consensus 158 ~ga~~i~l~DTvG~-----~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANsl-aAv~aGa~~v---~~TvnGiG 228 (409)
T COG0119 158 AGADRINLPDTVGV-----ATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSL-AAVEAGADQV---EGTVNGIG 228 (409)
T ss_pred cCCcEEEECCCcCc-----cCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHH-HHHHcCCcEE---EEecccce
Confidence 23455444443 346778899999988764 66655 4555444444 4556899877 44444444
Q ss_pred h
Q 021527 288 E 288 (311)
Q Consensus 288 ~ 288 (311)
|
T Consensus 229 E 229 (409)
T COG0119 229 E 229 (409)
T ss_pred e
Confidence 3
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=67.04 Aligned_cols=69 Identities=20% Similarity=0.142 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+..+...+..-..+-+|.. |.. -.+.++++.+.+++||.+|+||++ |++++++++|||-|++||++++
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL----g~~------n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML----GPN------NDDAAKEALHAYPGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC----CCC------cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 67777776655555666776 221 136788888888999999999997 9999999999999999999886
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0019 Score=62.18 Aligned_cols=161 Identities=22% Similarity=0.351 Sum_probs=103.2
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC----CCHHHHHHHHHHhhcc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG----TNFNAILSMLKEVVPQ 137 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G----~~~~~~~~~i~~ir~~ 137 (311)
...++.=+.-.+| +.+.+.++.+++.|+|+|+|.+=- | -|.|++.. .| .+.+-+.++++++++.
T Consensus 66 e~p~~vQl~gsdp--~~l~eaA~~~~~~g~~~IdlN~GC--P---~~~V~~~g-----~Ga~Ll~~p~lv~~iv~a~~~a 133 (323)
T COG0042 66 ERPVAVQLGGSDP--ELLAEAAKIAEELGADIIDLNCGC--P---SPKVVKGG-----AGAALLKNPELLAEIVKAMVEA 133 (323)
T ss_pred CCCEEEEecCCCH--HHHHHHHHHHHhcCCCEEeeeCCC--C---hHHhcCCC-----cchhhcCCHHHHHHHHHHHHHh
Confidence 3446666666677 889999999999999999994222 1 11222110 12 2667778899999988
Q ss_pred C-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 138 M-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 138 ~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
+ ++||=+-. +.|.+ . .| -...++...+.+.|.+.+. +...|..++
T Consensus 134 v~~iPVTVKi------RlG~d------------~---~~---~~~~~ia~~~~~~g~~~lt-VHgRtr~~~--------- 179 (323)
T COG0042 134 VGDIPVTVKI------RLGWD------------D---DD---ILALEIARILEDAGADALT-VHGRTRAQG--------- 179 (323)
T ss_pred hCCCCeEEEE------ecccC------------c---cc---ccHHHHHHHHHhcCCCEEE-EecccHHhc---------
Confidence 8 59998854 22221 1 00 0122344444455555433 222332111
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
.+|. ...+.|+++|+.++ +||+..++|.|+++++++++. |+|||.||-+.+.
T Consensus 180 ----------y~~~------ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 180 ----------YLGP------ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred ----------CCCc------cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 1221 12468999999887 999999999999999999985 6999999977654
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0015 Score=62.96 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=88.4
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCCh--HHHHHHHHHhC
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTP--TDRMKAIVEAS 215 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~--~eri~~i~~~a 215 (311)
+++||+-- -+.++ +..+....+.+.|.-+++==.+++|+..++.+..+......+....-+.+ .+|++++.+..
T Consensus 45 ~giPii~A-nMdTV---~~~~mA~~la~~g~~~~iHk~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~ 120 (346)
T PRK05096 45 SGVPIIAA-NMDTV---GTFEMAKALASFDILTAVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALS 120 (346)
T ss_pred cCCceEec-CCCcc---ccHHHHHHHHHCCCeEEEecCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcC
Confidence 56887762 22223 45678888888888887555688888777766666433333333322232 37787777754
Q ss_pred CceEEE--EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 216 EGFVYL--VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 216 ~gfiY~--vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.+..|+ -+..| -...+.++++++|+.. +++| +++.|-|+|.++.+.++|||++-||
T Consensus 121 ~g~D~iviD~AhG-------hs~~~i~~ik~ik~~~P~~~v-IaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 121 PALNFICIDVANG-------YSEHFVQFVAKAREAWPDKTI-CAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCCCEEEEECCCC-------cHHHHHHHHHHHHHhCCCCcE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 454444 33333 2445778999999976 5675 7889999999999999999999977
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0028 Score=64.43 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=98.9
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
...-|.++...+.++.+.+.|||+|-+|...+.| ++. .+...|+.+++.+++||-+.+|.
T Consensus 158 I~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p---~~~----------------~v~~~V~~l~~~~~~pISIDT~~- 217 (499)
T TIGR00284 158 IPPTVAEDGIEGLAARMERDGADMVALGTGSFDD---DPD----------------VVKEKVKTALDALDSPVIADTPT- 217 (499)
T ss_pred EcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCC---cHH----------------HHHHHHHHHHhhCCCcEEEeCCC-
Confidence 5566777778999999999999999999988777 321 23457777777778999998863
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH-----HHHHHHHHhCCce--EEEE
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT-----DRMKAIVEASEGF--VYLV 222 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~-----eri~~i~~~a~gf--iY~v 222 (311)
.+.++.+.++|+|- +.|+.-+...++.+.++++|...|.+-....+. ++++... ..|+ +++-
T Consensus 218 -------~~v~eaAL~aGAdi--INsVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~--~~Gi~~IIlD 286 (499)
T TIGR00284 218 -------LDELYEALKAGASG--VIMPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLR--TSGYSKVAAD 286 (499)
T ss_pred -------HHHHHHHHHcCCCE--EEECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHH--HCCCCcEEEe
Confidence 35677888889994 446654444567777889998776654321111 2222221 3454 4554
Q ss_pred ecCCccCCCCCCCchHHHHHHHHh---hcCCCcEEEeeC
Q 021527 223 SSIGVTGARASISGHVQTLLREIK---ESSTKPVAVGFG 258 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk---~~~~~Pv~vGfG 258 (311)
...|. .+..+.+.+.+++ +..+.|+++|-|
T Consensus 287 Pglg~------~~~~l~~sL~~l~~~r~~~~~Pil~GvS 319 (499)
T TIGR00284 287 PSLSP------PLLGLLESIIRFRRASRLLNVPLVFGAA 319 (499)
T ss_pred CCCCc------chHHHHHHHHHHHHHHHhcCCcEEEeec
Confidence 54442 1223444445544 456799999875
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00046 Score=63.62 Aligned_cols=78 Identities=31% Similarity=0.388 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+..+...+..-.++=+|.+.|-. .+-+. -.+.++++.+.+++||-+|+||++.|+++.+++.|++-||+||+-
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~---~g~~~-n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGAK---AGGPR-NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeeccccc---cCCcc-cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 45677777766444455568766533 22222 246799999999999999999999999999999999999999988
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
++
T Consensus 108 v~ 109 (241)
T COG0106 108 VK 109 (241)
T ss_pred ec
Confidence 65
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.013 Score=55.48 Aligned_cols=187 Identities=12% Similarity=0.139 Sum_probs=107.9
Q ss_pred EEEEEeC----CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--C
Q 021527 65 LIPYITA----GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--M 138 (311)
Q Consensus 65 li~yi~~----G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~ 138 (311)
+.+.+|| |.-|.+.+.+.++.+.+.|+|.|-++--.. +++ -.+.++..++++.+.+. -
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstG----E~~------------~Ls~eEr~~l~~~~~~~~~~ 68 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTG----EFF------------SLTPDEYAQVVRAAVEETAG 68 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCc----Ccc------------cCCHHHHHHHHHHHHHHhCC
Confidence 3444555 556678999999999999999998851111 111 14556666677766654 3
Q ss_pred CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-----CCChhhHHH-HHHHHHHcCCCeEEEeCC--CChHHHHHH
Q 021527 139 SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-----DVPLEETES-LQKEAMKNKIELVLFTTP--TTPTDRMKA 210 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-----Dlp~ee~~~-~~~~~~~~gi~~I~lisp--~t~~eri~~ 210 (311)
++||+.-.-.|+ ...-+..+.+.++|+|++++. ....++..+ |...+...++.++++=.+ +.+.+-+++
T Consensus 69 ~~pvi~gv~~~t---~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~ 145 (289)
T cd00951 69 RVPVLAGAGYGT---ATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLAR 145 (289)
T ss_pred CCCEEEecCCCH---HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH
Confidence 689887654332 223457788999999998883 122244555 455556667776655322 234566777
Q ss_pred HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCC-HHHHHHHHHcCCcEEEEhhH
Q 021527 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISK-PEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 211 i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst-~e~v~~v~~~GADGvIVGSa 281 (311)
+++.-..++++=.. +| +. ..+.++++..+-.+.+-.|-.+ -..+-..+..|++|.|-|.+
T Consensus 146 L~~~~pnivgiKds---~~-------d~-~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~l~~Ga~G~is~~~ 206 (289)
T cd00951 146 LAERCPNLVGFKDG---VG-------DI-ELMRRIVAKLGDRLLYLGGLPTAEVFALAYLAMGVPTYSSAVF 206 (289)
T ss_pred HHhcCCCEEEEEeC---CC-------CH-HHHHHHHHhcCCCeEEEeCCCcchHhHHHHHHCCCCEEEechh
Confidence 76423455544211 11 11 2344444433223334344322 23356667789999997743
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.017 Score=54.06 Aligned_cols=194 Identities=12% Similarity=0.187 Sum_probs=109.1
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
..+.++.+.+.|||+|=+-+.-..| +-++.++.-++++.+.+....+|.++. | -..+.
T Consensus 56 ~~eda~~a~~~GaD~iGfIf~~~Sp----------------R~Vs~e~a~~I~~~l~~~~~~~VgVfv--~----~~~~~ 113 (256)
T PLN02363 56 SARDAAMAVEAGADFIGMILWPKSK----------------RSISLSVAKEISQVAREGGAKPVGVFV--D----DDANT 113 (256)
T ss_pred cHHHHHHHHHcCCCEEEEecCCCCC----------------CcCCHHHHHHHHHhccccCccEEEEEe--C----CCHHH
Confidence 3678888899999998885422333 113333334455544432123577764 2 22455
Q ss_pred HHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh-C--CceEEEEecCCccCCCCCC
Q 021527 159 FMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA-S--EGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 159 fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~-a--~gfiY~vs~~G~TG~~~~~ 234 (311)
..+.+.+.|.|.|=+++ .+.+ +.+.++. ++..+..+......+-+..+... . -.++.+-+..|.||.. .
T Consensus 114 I~~~~~~~~ld~VQLHG~e~~~----~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~~GGtG~t--~ 186 (256)
T PLN02363 114 ILRAADSSDLELVQLHGNGSRA----AFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSATGGSGKG--F 186 (256)
T ss_pred HHHHHHhcCCCEEEECCCCCHH----HHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeCCCCCCCCc--c
Confidence 56677889999998874 3322 2333332 35555444433222222222221 1 1233333444666653 2
Q ss_pred CchHHHHHHHHhh-cCCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHhhC
Q 021527 235 SGHVQTLLREIKE-SSTKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 235 ~~~~~~~l~~vk~-~~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
+.. .+.. .. ....|+++.+||+ |||+.++.+ .+.+||=|=|.+...-+ .....+++++|++.++.+.
T Consensus 187 DW~---~l~~-~~~~~~~p~iLAGGL~-peNV~~ai~~~~P~GVDVsSGVE~~pG----~~KD~~KI~~fv~~vr~~~ 255 (256)
T PLN02363 187 NWQ---NFKL-PSVRSRNGWLLAGGLT-PENVHEAVSLLKPTGVDVSSGICGPDG----IRKDPSKISSFISAVKSVA 255 (256)
T ss_pred CHH---Hhcc-cccccCCCEEEECCCC-HHHHHHHHHhcCCcEEEeCCcccCCCC----cccCHHHHHHHHHHHHhhc
Confidence 321 2220 01 1245899999996 899999875 57899988787764211 1135789999999998753
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.012 Score=55.32 Aligned_cols=178 Identities=17% Similarity=0.200 Sum_probs=106.2
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|..|.+.+.+.++.+.+.|+|.+-++--.. ++.. .+.++..++++.+.+. .++||++-+-.+
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstG----E~~~------------Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 80 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTG----EFYS------------LTDEERKELLEIVVEAAAGRVPVIAGVGAN 80 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTT----TGGG------------S-HHHHHHHHHHHHHHHTTSSEEEEEEESS
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCc----cccc------------CCHHHHHHHHHHHHHHccCceEEEecCcch
Confidence 777889999999999999999999963221 2222 3445555666655542 468988865443
Q ss_pred chhccCHHHHHHHHHHcCCcEEEe--cC---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVV--PD---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGvii--pD---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-++++.+.+.|+||+++ |- ...++..+ |...+..-++..++.-.| ..+.+-+.++++ -..+
T Consensus 81 st~--~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~-~~nv 157 (289)
T PF00701_consen 81 STE--EAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK-IPNV 157 (289)
T ss_dssp SHH--HHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT-STTE
T ss_pred hHH--HHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc-CCcE
Confidence 221 1245777889999999976 21 22244444 566667777877776555 334566777766 4455
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
+.+=- .+| +.....+.++... +..++.| . -+.+-..+..|+||++.|++-
T Consensus 158 ~giK~---s~~-------~~~~~~~~~~~~~~~~~v~~G---~-d~~~~~~l~~G~~G~is~~~n 208 (289)
T PF00701_consen 158 VGIKD---SSG-------DLERLIQLLRAVGPDFSVFCG---D-DELLLPALAAGADGFISGLAN 208 (289)
T ss_dssp EEEEE---SSS-------BHHHHHHHHHHSSTTSEEEES---S-GGGHHHHHHTTSSEEEESGGG
T ss_pred EEEEc---Cch-------hHHHHHHHhhhcccCeeeecc---c-cccccccccccCCEEEEcccc
Confidence 54421 011 1223333333322 3455555 2 345677788999999999773
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0035 Score=65.04 Aligned_cols=181 Identities=14% Similarity=0.111 Sum_probs=113.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe-------
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT------- 146 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~------- 146 (311)
..++...++..++++|...+|++- |-.... +.| +.-++=.+.++.+|+. .++|+..+.
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~g--------Gatfd~-~~r-----fl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vG 89 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWG--------GATFDA-CLR-----FLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLG 89 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeC--------Ccccce-eec-----ccCCCHHHHHHHHHHhCCCCceEEEeccccccc
Confidence 346788999999999999999961 111111 111 1112224556666654 567776553
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChh--hHHHHHHHHHHcCCCeEEE----eCCCChHHHHHHHHHh----CC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE--ETESLQKEAMKNKIELVLF----TTPTTPTDRMKAIVEA----SE 216 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~e--e~~~~~~~~~~~gi~~I~l----isp~t~~eri~~i~~~----a~ 216 (311)
|.+ .-.-=++.|++.+++.|+|-+=+-|...+ ..+...+.+++.|...... .+|..+.+...++++. .-
T Consensus 90 y~~-~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Ga 168 (596)
T PRK14042 90 YRN-YADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGC 168 (596)
T ss_pred ccc-CChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 433 00001356999999999999988875432 3555678888999865433 4666666654444432 33
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
..|++....| . ..|..+.++++.+|+.+++||-+ ..|... .+.-...++|||.|
T Consensus 169 d~I~IkDtaG---~--l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~-an~laAieaGad~i 226 (596)
T PRK14042 169 DSIAIKDMAG---L--LTPTVTVELYAGLKQATGLPVHLHSHSTSGLAS-ICHYEAVLAGCNHI 226 (596)
T ss_pred CEEEeCCccc---C--CCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHH-HHHHHHHHhCCCEE
Confidence 3456554433 3 34667899999999988888765 344443 45566678999865
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.01 Score=55.49 Aligned_cols=195 Identities=19% Similarity=0.285 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHcCCccEEE---EEeCCCC--ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC
Q 021527 48 VGLAETFTRLKKQGKVALIP---YITAGDP--DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT 122 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~---yi~~G~P--~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~ 122 (311)
.|+++.|+. ..||..+++ -+.-|.| .++.....++.+.++|+|.+... | |
T Consensus 11 ~rl~rif~~--~tG~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~-----~---G--------------- 65 (265)
T COG1830 11 RRLARIFNR--GTGRLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMT-----P---G--------------- 65 (265)
T ss_pred HHHHHHhcC--CCCCEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEec-----H---h---------------
Confidence 356666652 145444444 2355545 56677788889999999999884 1 2
Q ss_pred CHHHHHHHHHHhhcc--CCCcEEEEecCcch-----hccCHHHHHHHHHHcCCcEEEec---CCC-----hhhHHHHHHH
Q 021527 123 NFNAILSMLKEVVPQ--MSCPIALFTYYNPI-----LKRGVDNFMSTVRDIGIRGLVVP---DVP-----LEETESLQKE 187 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~--~~iPiilm~Y~n~i-----~~~g~~~fi~~~~~aGadGviip---Dlp-----~ee~~~~~~~ 187 (311)
+++.+... .++|+++..--+.- +..-.-..++++...|+|+|-+. --. +++..+.+..
T Consensus 66 -------~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~ 138 (265)
T COG1830 66 -------IARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVED 138 (265)
T ss_pred -------HHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 44444332 37898887422211 11111235678889999987663 111 2346677889
Q ss_pred HHHcCCCeEEEeCCCChH---------HHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEe
Q 021527 188 AMKNKIELVLFTTPTTPT---------DRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVG 256 (311)
Q Consensus 188 ~~~~gi~~I~lisp~t~~---------eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG 256 (311)
|.++|+..+..+.|..+. +-+...++. ..|...+= ...||.. +-.+++-+.+.+||++.
T Consensus 139 a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK--~~ytg~~--------e~F~~vv~~~~vpVvia 208 (265)
T COG1830 139 AHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIK--TKYTGDP--------ESFRRVVAACGVPVVIA 208 (265)
T ss_pred HHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEe--ecCCCCh--------HHHHHHHHhCCCCEEEe
Confidence 999999988876554332 122211111 12333221 1244432 44666666778999999
Q ss_pred eCCCC------HHHHHHHHHcCCcEEEEhhHhhc
Q 021527 257 FGISK------PEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 257 fGIst------~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+|=++ .+.+.++.+.||-|+++|=-+..
T Consensus 209 GG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 209 GGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred CCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 99887 34567778999999999977776
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.022 Score=53.10 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 77 STTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+.+.++.+.+.|+.++-=|. |=+.|+.= .|... +.++++++++++.++|++--.+ +
T Consensus 29 e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf-------------~G~G~-~gl~~L~~~~~~~Gl~~~Tev~-d----- 88 (250)
T PRK13397 29 DHIRLAASSAKKLGYNYFRGGAYKPRTSAASF-------------QGLGL-QGIRYLHEVCQEFGLLSVSEIM-S----- 88 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEecccCCCCCCccc-------------CCCCH-HHHHHHHHHHHHcCCCEEEeeC-C-----
Confidence 6789999999999998887652 11333221 34444 4788999999999999877432 1
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCC-C-ChHHH---HHHHHHhCC-ceEEEEecCCcc
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTP-T-TPTDR---MKAIVEASE-GFVYLVSSIGVT 228 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp-~-t~~er---i~~i~~~a~-gfiY~vs~~G~T 228 (311)
..-++.+.+ .+|.+-|+-..... ..+..++.+.|. +|.+-.. . +.+|. ++.+.+... .++.| ..|++
T Consensus 89 --~~~v~~~~e-~vdilqIgs~~~~n-~~LL~~va~tgk-PVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~--eRg~~ 161 (250)
T PRK13397 89 --ERQLEEAYD-YLDVIQVGARNMQN-FEFLKTLSHIDK-PILFKRGLMATIEEYLGALSYLQDTGKSNIILC--ERGVR 161 (250)
T ss_pred --HHHHHHHHh-cCCEEEECcccccC-HHHHHHHHccCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEE--ccccC
Confidence 345666666 59999998543333 335566666674 4555544 2 33332 222322222 23333 22555
Q ss_pred CCCCCCC-chHHHHHHHHhhcCCCcEEEeeCCCCH-------HHHHHHHHcCCcEEEEhhHhhc--hhhhcCCchhHHHH
Q 021527 229 GARASIS-GHVQTLLREIKESSTKPVAVGFGISKP-------EHVQQVAGWGADGVIVGSAMVK--LLGEAQSPEEGLKE 298 (311)
Q Consensus 229 G~~~~~~-~~~~~~l~~vk~~~~~Pv~vGfGIst~-------e~v~~v~~~GADGvIVGSaiv~--~~~~~~~~~~~~~~ 298 (311)
+..+... .-...-+..+|+.+++||++|.. ++. .-.......||||++|=+.+-- .+.++ ...-.+++
T Consensus 162 ~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~S-Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~-~q~l~~~~ 239 (250)
T PRK13397 162 GYDVETRNMLDIMAVPIIQQKTDLPIIVDVS-HSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDA-AQQIDYKQ 239 (250)
T ss_pred CCCCccccccCHHHHHHHHHHhCCCeEECCC-CCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCch-hhhCCHHH
Confidence 5432211 11124577888888999999866 432 3356667899999997654432 11111 01122778
Q ss_pred HHHHHHHHHh
Q 021527 299 LEKFAKSLKS 308 (311)
Q Consensus 299 ~~~~~~~l~~ 308 (311)
+++++++++.
T Consensus 240 l~~l~~~~~~ 249 (250)
T PRK13397 240 LEQLGQELWQ 249 (250)
T ss_pred HHHHHHHhcc
Confidence 8888888764
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.011 Score=55.28 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=110.8
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIAL 144 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiil 144 (311)
||---|.-|.+.+.+.++.|.+.|+|.|-+.--- | ...-.+.++..++++.+++.. ++||++
T Consensus 8 Pf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~Gst------G----------E~~~ls~~Er~~l~~~~~~~~~~~~~vi~ 71 (281)
T cd00408 8 PFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTT------G----------EAPTLTDEERKEVIEAVVEAVAGRVPVIA 71 (281)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCC------c----------ccccCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 4445577888999999999999999999885111 1 112246667777777776653 688887
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHH
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVE 213 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~ 213 (311)
-.-.+... ...+..+.+.++|+|++++. - ...++..+ |...+...++..+++=.|. .+.+-++++++
T Consensus 72 gv~~~~~~--~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 72 GVGANSTR--EAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred ecCCccHH--HHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 65443221 23457778899999999883 1 12245555 4555555677777664443 23466666654
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
-..++.+ +... .+. ..+.++++.. +..++.|. -+.+-..+..|++|.+-|++
T Consensus 150 -~~~v~gi---------K~s~-~d~-~~~~~~~~~~~~~~~v~~G~----d~~~~~~l~~G~~G~i~~~~ 203 (281)
T cd00408 150 -HPNIVGI---------KDSS-GDL-DRLTRLIALLGPDFAVLSGD----DDLLLPALALGADGAISGAA 203 (281)
T ss_pred -CCCEEEE---------EeCC-CCH-HHHHHHHHhcCCCeEEEEcc----hHHHHHHHHcCCCEEEehHH
Confidence 3444433 1111 112 3444554443 34454443 35677777899999999964
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00076 Score=62.66 Aligned_cols=125 Identities=22% Similarity=0.284 Sum_probs=76.6
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHH----HHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHH-hCC-
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETE----SLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVE-ASE- 216 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~----~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~-~a~- 216 (311)
....++++|++++|+.. ..+.|.. .-.+.+.++|+.+|+-+. .+-++| ++.... ...
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvG-Etl~~reag~t~~v~~~Ql~~~l~~l~~~ 158 (251)
T COG0149 80 SAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVG-ETLEEREAGKTLEVLKRQLAAALAALSPE 158 (251)
T ss_pred CHHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcC-CCHHHHhccChHHHHHHHHHHHHhhcCcc
Confidence 45678999999999963 2223333 445678899998776555 343322 111111 122
Q ss_pred --ceEEEEe--cCCccCCCCC--CCchHHHHHHHHhhc-----CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 217 --GFVYLVS--SIGVTGARAS--ISGHVQTLLREIKES-----STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 217 --gfiY~vs--~~G~TG~~~~--~~~~~~~~l~~vk~~-----~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
-+|-|.+ ..| ||-... .+..+...|+.+... .++||.+|++|+..+..+.+...++||+.||++-++.
T Consensus 159 ~~~vIAYEPvWAIG-TG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka 237 (251)
T COG0149 159 ANIVIAYEPVWAIG-TGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKA 237 (251)
T ss_pred cCeEEEECCHHHhc-CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecc
Confidence 3444432 333 564322 122344455554433 2689999999997666666778899999999999873
|
|
| >cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=61.30 Aligned_cols=122 Identities=21% Similarity=0.295 Sum_probs=77.5
Q ss_pred HHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH--------HHHHHHh--------
Q 021527 159 FMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDR--------MKAIVEA-------- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~~~-------- 214 (311)
-.+.++++|++.+++..- ..+....-...+.++|+.+|+-+.- +.++| +....+.
T Consensus 76 S~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE-~~~~r~~~~~~~~~~~Ql~~~l~~~~~~ 154 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGE-TLEEREAGKTEEVVAAQLAAVLAGVEDL 154 (242)
T ss_pred CHHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHcCCHHHHHHHHHHHHHhcchhh
Confidence 456789999999999631 2223444456778899988876664 33444 1111111
Q ss_pred CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC---------CCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHh
Q 021527 215 SEGFVYLVS--SIGVTGARASISGHVQTLLREIKESS---------TKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAM 282 (311)
Q Consensus 215 a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~---------~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSai 282 (311)
..-+|-|.+ ..| ||.. ..+.+..+..+.+|+.. ++||++|++|+ ++|+++++..+ .||+-||++-
T Consensus 155 ~~~iIAYEPvWAIG-tG~~-as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~-~~N~~~l~~~~~vDG~LVG~As 231 (242)
T cd00311 155 APVVIAYEPVWAIG-TGKT-ASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVN-PENAAELLAQPDIDGVLVGGAS 231 (242)
T ss_pred cCeEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCC-HHHHHHHhcCCCCCEEEeehHh
Confidence 122333322 223 5542 22344556666666532 47999999998 59999999988 9999999998
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 232 l~ 233 (242)
T cd00311 232 LK 233 (242)
T ss_pred hC
Confidence 86
|
The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea. |
| >cd00740 MeTr MeTr subgroup of pterin binding enzymes | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0083 Score=55.88 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=88.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+...+.++.+.+.|||+|.+|.-.. ..| +. ++..+++..+++.+++|+-+.+|-
T Consensus 24 ~~d~~~~~A~~~~~~GAdiIDIG~~~~--~~~-~~---------------ee~~r~v~~i~~~~~~piSIDT~~------ 79 (252)
T cd00740 24 DYDEALDVARQQVEGGAQILDLNVDYG--GLD-GV---------------SAMKWLLNLLATEPTVPLMLDSTN------ 79 (252)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC--CCC-HH---------------HHHHHHHHHHHHhcCCcEEeeCCc------
Confidence 347788999999999999999997321 111 11 112233334444468999998862
Q ss_pred CHHHHHHHHHHc--CCcEEEecCCChh----hHHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHH---HH---hCCc
Q 021527 155 GVDNFMSTVRDI--GIRGLVVPDVPLE----ETESLQKEAMKNKIELVLFTT-----PTTPTDRMKAI---VE---ASEG 217 (311)
Q Consensus 155 g~~~fi~~~~~a--GadGviipDlp~e----e~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i---~~---~a~g 217 (311)
-+.++.+.+. |++ ++.|+..+ +..++.+.++++|...|.+.. |.+.++|.... .+ ...|
T Consensus 80 --~~v~e~aL~~~~G~~--iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~~~~~~~~~~~g 155 (252)
T cd00740 80 --WEVIEAGLKCCQGKC--VVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAERAYEALTEFVG 155 (252)
T ss_pred --HHHHHHHHhhCCCCc--EEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 2345555554 877 45665433 355677788999988887765 55555443221 11 1234
Q ss_pred ----eEEEEecCCccCCC-CCCCchHHHHHHH---Hhhc-CCCcEEEeeC
Q 021527 218 ----FVYLVSSIGVTGAR-ASISGHVQTLLRE---IKES-STKPVAVGFG 258 (311)
Q Consensus 218 ----fiY~vs~~G~TG~~-~~~~~~~~~~l~~---vk~~-~~~Pv~vGfG 258 (311)
-+++-...|.-++. ...+..+.+.+++ +|+. .+.|+++|-+
T Consensus 156 i~~~~IiiDPgig~~~~~~~e~~~~~l~~l~~~~~~~~~~p~~pil~G~S 205 (252)
T cd00740 156 FPPEDIIFDPLILPIATGIEEHRPYALETIDAIRMIKERLPAVKISLGVS 205 (252)
T ss_pred CCHHHEEEeCCcccccCccHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 46665555532221 0111123333444 4443 3789999744
|
This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0026 Score=61.35 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=80.1
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC-ChHHHHHHHHHhCC
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT-TPTDRMKAIVEASE 216 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~-t~~eri~~i~~~a~ 216 (311)
+++||+.- |.....-.+++..+.+.|.=|++-...+.++..+..+.+++. +.....+.++ ...++++.+.+ .
T Consensus 33 l~~Piv~a----pM~~vt~~~ma~ava~~GglGvi~~~~~~~~~~~~i~~vk~~-l~v~~~~~~~~~~~~~~~~l~e--a 105 (325)
T cd00381 33 LNIPLVSA----PMDTVTESEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVKGR-LLVGAAVGTREDDKERAEALVE--A 105 (325)
T ss_pred cCCCEEec----CCCcCCcHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhccC-ceEEEecCCChhHHHHHHHHHh--c
Confidence 67898762 222222357888899999999988777777766665555531 1111222221 11356666655 3
Q ss_pred ceEEE-EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 217 GFVYL-VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 217 gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
|..++ ++.. .| .+....+.++++|+.. ++||++ +.+.|+++++++.++|||+++||
T Consensus 106 gv~~I~vd~~--~G----~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 106 GVDVIVIDSA--HG----HSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred CCCEEEEECC--CC----CcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 44333 3221 12 1234667899999876 488877 45567999999999999999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0027 Score=62.78 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHcC--CCeEEEeCCCChHHHHHHHHHhC-CceEEEEecCCccCCCC-------CCCchHHHHHHHHhhc
Q 021527 179 EETESLQKEAMKNK--IELVLFTTPTTPTDRMKAIVEAS-EGFVYLVSSIGVTGARA-------SISGHVQTLLREIKES 248 (311)
Q Consensus 179 ee~~~~~~~~~~~g--i~~I~lisp~t~~eri~~i~~~a-~gfiY~vs~~G~TG~~~-------~~~~~~~~~l~~vk~~ 248 (311)
++..++.+.+++.. ..++.-..+....+.+...++.. -.+|-+....|.||... +++ ....+.++++.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~p--t~~~L~~v~~~ 276 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLP--TELGLARAHQA 276 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCcc--HHHHHHHHHHH
Confidence 44566777777764 33333334432234444444433 34444333335565431 222 22334443332
Q ss_pred -------CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 249 -------STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 249 -------~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.++||++.+||.++.|+.+.+..|||+|-+|+++...+
T Consensus 277 ~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al 321 (392)
T cd02808 277 LVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIAL 321 (392)
T ss_pred HHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhc
Confidence 26899999999999999999999999999999999765
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0048 Score=62.80 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-CcEEEEecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CPIALFTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iPiilm~Y~n~i~~~ 154 (311)
.++-+++++.|++.|+|.||+|+|-+.| + + ++.++++++... ..+..++-.+
T Consensus 22 ~e~K~~ia~~L~~~GV~~IEvG~p~~s~---~------------------d-~e~v~~i~~~~~~~~i~al~r~~----- 74 (494)
T TIGR00973 22 VEEKLQIALALERLGVDIIEAGFPVSSP---G------------------D-FEAVQRIARTVKNPRVCGLARCV----- 74 (494)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCH---H------------------H-HHHHHHHHHhCCCCEEEEEcCCC-----
Confidence 4778999999999999999999998754 1 0 234555544333 3344444222
Q ss_pred CHHHHHHHHHHc----CCcEEEe--c--CCC--------hhh----HHHHHHHHHHcCCCeEEEeC--CCChHHHHHHHH
Q 021527 155 GVDNFMSTVRDI----GIRGLVV--P--DVP--------LEE----TESLQKEAMKNKIELVLFTT--PTTPTDRMKAIV 212 (311)
Q Consensus 155 g~~~fi~~~~~a----GadGvii--p--Dlp--------~ee----~~~~~~~~~~~gi~~I~lis--p~t~~eri~~i~ 212 (311)
.+.++.+.++ +.+.+.+ + |+- .+| ..+..+.++++|....+..- -.++.+.+.++.
T Consensus 75 --~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~ 152 (494)
T TIGR00973 75 --EKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIV 152 (494)
T ss_pred --HHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHH
Confidence 3445555544 5666555 2 211 122 45677788999986444321 123345554444
Q ss_pred Hh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 213 EA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST----KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 213 ~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+. ....+++.... |. ..|..+.++++.+++.++ +|+-+ .+|...+. ....+++||+.|
T Consensus 153 ~~~~~~Ga~~i~l~DTv---G~--~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvAN-alaAv~aGa~~v 222 (494)
T TIGR00973 153 EAAINAGATTINIPDTV---GY--ALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVAN-SLAAVQNGARQV 222 (494)
T ss_pred HHHHHcCCCEEEeCCCC---CC--CCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHH-HHHHHHhCCCEE
Confidence 43 22345555544 43 356778899999988753 34433 33555444 445557899865
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0048 Score=68.58 Aligned_cols=181 Identities=16% Similarity=0.094 Sum_probs=110.5
Q ss_pred ChhhHHHHHHHHHHC--CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe-----
Q 021527 75 DLSTTAEALKLLDSC--GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT----- 146 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~--GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~----- 146 (311)
..++.+.+++.|+++ |++.||+|.. ..-..+.+.+ +-+- ++.++++|+. .++|+..+.
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~gg---------atfd~~~r~l--~e~p---~erl~~~r~~~~~~~~q~l~Rg~n~ 618 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGG---------ATFDVAYRFL--KEDP---WERLAELREAAPNVLFQMLLRGSNA 618 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCC---------cchhhhcccc--CCCH---HHHHHHHHHhCCCCeEEEEeccccc
Confidence 346889999999999 9999999832 1112222221 1111 3456666654 467766553
Q ss_pred --cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCe---EEEe----CCCC---hHHH----H
Q 021527 147 --YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIEL---VLFT----TPTT---PTDR----M 208 (311)
Q Consensus 147 --Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~---I~li----sp~t---~~er----i 208 (311)
|-| .-..-.++|++.++++|+|.+-+-|-.. +......+.+++.|... +.+. .|+. +.+. .
T Consensus 619 vgy~~-yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a 697 (1146)
T PRK12999 619 VGYTN-YPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLA 697 (1146)
T ss_pred ccccC-CCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHH
Confidence 322 1112346799999999999999976443 34555677778888522 1222 1222 3333 3
Q ss_pred HHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 209 KAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 209 ~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+++.+..-.-+++-...| . -.|..+.++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 698 ~~l~~~Ga~~i~ikDt~G---~--l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~-an~laA~~aGad~v 763 (1146)
T PRK12999 698 KELEKAGAHILAIKDMAG---L--LKPAAAYELVSALKEEVDLPIHLHTHDTSGNGL-ATYLAAAEAGVDIV 763 (1146)
T ss_pred HHHHHcCCCEEEECCccC---C--CCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHH-HHHHHHHHhCCCEE
Confidence 333333333455544333 2 34667889999999988999876 556654 45566778999876
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.004 Score=66.49 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHCCCCEEEEc-----------CCCCCCCCChHHHHHHHHHHHHcCCC----HHHHHHHHHHhhccC--CC
Q 021527 78 TTAEALKLLDSCGSDIIELG-----------VPYSDPLADGPVIQAAATRSLARGTN----FNAILSMLKEVVPQM--SC 140 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG-----------~PfsDP~aDGp~Iq~a~~~Al~~G~~----~~~~~~~i~~ir~~~--~i 140 (311)
.+.+.++.+.++|.|+|||- -|.++---| +.|-+ ++-.+++++.||+.+ +.
T Consensus 552 ~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD------------~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 552 DFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTD------------EYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCC------------CCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 57788889999999999993 233222222 12322 234567888888764 46
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
||.+-. |+ .++.+ ..+.+||..++.+.+.+.|++.|-+.+..+..+. ..
T Consensus 620 ~v~~ri--~~------~~~~~------------~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~--------~~--- 668 (765)
T PRK08255 620 PMSVRI--SA------HDWVE------------GGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDE--------KP--- 668 (765)
T ss_pred eeEEEE--cc------ccccC------------CCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCC--------CC---
Confidence 776632 21 11110 1134567777888888888887766544321000 00
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..+ . .. ...+.+++|+.+++||++.++|++++++.++++.| +|.|-+|-.++.
T Consensus 669 ---~~~---~--~~---~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 669 ---VYG---R--MY---QTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred ---CcC---c--cc---cHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 000 0 01 12456788888899999999999999999999876 999999988775
|
|
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0034 Score=60.73 Aligned_cols=175 Identities=11% Similarity=0.096 Sum_probs=99.8
Q ss_pred eCCCC-ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC----CCcEEE
Q 021527 70 TAGDP-DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM----SCPIAL 144 (311)
Q Consensus 70 ~~G~P-~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~----~iPiil 144 (311)
++|-+ +.++-+++++.|++.|+|.||+|+|-+.+ +-++.+++|.+.. ++.+..
T Consensus 46 ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~----------------------~e~e~ir~I~~~~~~~~~~~i~~ 103 (333)
T PRK14847 46 ALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQ----------------------TDFDFVRKLIDERRIPDDVTIEA 103 (333)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCH----------------------HHHHHHHHHHHhCCCCCCcEEEE
Confidence 45553 35778999999999999999999998543 1245677775542 233433
Q ss_pred EecCcchhccCHHHHHHHHHHcCCc----EEEe--c--CCCh--------hh----HHHHHHHHHHcCC-----C-eEEE
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIR----GLVV--P--DVPL--------EE----TESLQKEAMKNKI-----E-LVLF 198 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGad----Gvii--p--Dlp~--------ee----~~~~~~~~~~~gi-----~-~I~l 198 (311)
++ ....+.++.+.+++.+ .|.+ | |+-. ++ ..+..+.+++++. . .|-+
T Consensus 104 ~~-------r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~ 176 (333)
T PRK14847 104 LT-------QSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEY 176 (333)
T ss_pred Ee-------cCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEE
Confidence 33 2335667767666554 3555 2 2211 22 4455667788854 1 2333
Q ss_pred eC---CCChHHHHHHHHHhC---C-----ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC----CCcEEE----eeCC
Q 021527 199 TT---PTTPTDRMKAIVEAS---E-----GFVYLVSSIGVTGARASISGHVQTLLREIKESS----TKPVAV----GFGI 259 (311)
Q Consensus 199 is---p~t~~eri~~i~~~a---~-----gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~----~~Pv~v----GfGI 259 (311)
.. ..+..+.+.++.+.+ - |...+ +..-+.|. ..|..+.+.++.+++.+ ++|+-+ .+|.
T Consensus 177 ~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i-~l~DTVG~--~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~Gl 253 (333)
T PRK14847 177 SPETFSLAELDFAREVCDAVSAIWGPTPQRKMII-NLPATVES--STANVYADQIEWMHRSLARRDCIVLSVHPHNDRGT 253 (333)
T ss_pred eeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEE-EeCCcccc--CCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCch
Confidence 22 223445555554421 1 22222 22234554 24556778899888765 455544 4555
Q ss_pred CCHHHHHHHHHcCCcEEE
Q 021527 260 SKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 260 st~e~v~~v~~~GADGvI 277 (311)
.. .+....+++||+.+=
T Consensus 254 A~-ANslaA~~aGa~~i~ 270 (333)
T PRK14847 254 AV-AAAELAVLAGAERIE 270 (333)
T ss_pred HH-HHHHHHHHhCCCEEE
Confidence 54 445566779999873
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.016 Score=54.14 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=75.1
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~~ 128 (311)
.|.++++++++. ..+++=|. -.++.++++|+|+|-.| |+ . +...+. ..+++++.+
T Consensus 3 ~lr~l~~~~~~l--~~~~ayD~------~sA~l~e~aG~d~i~vG--------ds-~----~~~~lG~pDt~~vtl~em~ 61 (254)
T cd06557 3 DLQKMKKAGEKI--VMLTAYDY------PTAKLADEAGVDVILVG--------DS-L----GMVVLGYDSTLPVTLDEMI 61 (254)
T ss_pred hHHHHHhCCCcE--EEEeCCCH------HHHHHHHHcCCCEEEEC--------HH-H----HHHHcCCCCCCCcCHHHHH
Confidence 366666665543 34444443 56777889999999876 11 1 001111 126889999
Q ss_pred HHHHHhhccCCCc-EEEEe----cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE
Q 021527 129 SMLKEVVPQMSCP-IALFT----YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 129 ~~i~~ir~~~~iP-iilm~----Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I 196 (311)
..++.|++-.+.| ++... |.|.... ..++-.+.++++|++||-+=|- +|..+..+.+.+.|+.+.
T Consensus 62 ~~~~~V~r~~~~p~viaD~~fg~y~~~~~~-av~~a~r~~~~aGa~aVkiEd~--~~~~~~I~al~~agipV~ 131 (254)
T cd06557 62 YHTRAVRRGAPRALVVADMPFGSYQTSPEQ-ALRNAARLMKEAGADAVKLEGG--AEVAETIRALVDAGIPVM 131 (254)
T ss_pred HHHHHHHhcCCCCeEEEeCCCCcccCCHHH-HHHHHHHHHHHhCCeEEEEcCc--HHHHHHHHHHHHcCCCee
Confidence 9999999888999 55422 3331110 0223344556699999999875 466667777888897654
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0044 Score=56.28 Aligned_cols=197 Identities=18% Similarity=0.238 Sum_probs=110.1
Q ss_pred HHHHHHHHHcC-CccEEEEEeCCCCChh------hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 51 AETFTRLKKQG-KVALIPYITAGDPDLS------TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 51 ~~~f~~~~~~~-~~~li~yi~~G~P~~~------~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
++.+..++... ++.+|.=+---.|+.. ...+++.+..++|+..|-+= .|| ...+ -+
T Consensus 58 ~dF~~~Lr~shk~p~liAEVKrASPSkG~ik~d~~~ae~A~~Yak~GAs~iSVL---Te~----k~Fk----------Gs 120 (289)
T KOG4201|consen 58 QDFYGALRSSHKRPGLIAEVKRASPSKGIIKLDANAAEQALAYAKGGASCISVL---TEP----KWFK----------GS 120 (289)
T ss_pred HHHHHHHHHhcccchHHHHHhhcCCCCCccccccCHHHHHHHHHhcCceeeeee---cCc----hhhc----------cc
Confidence 44445555442 4455544433334331 36789999999999999883 333 1111 02
Q ss_pred HHHHHHHHHHhhc--cCCCc---EEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeE
Q 021527 124 FNAILSMLKEVVP--QMSCP---IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 124 ~~~~~~~i~~ir~--~~~iP---iilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I 196 (311)
+ +.+..+|+ .+++| +..--+. ...-+ +=.+.-.|+|.|++- -|+..+..++.+.|+..|++..
T Consensus 121 l----edL~~irk~~~~k~p~~~lL~KeFi-----vd~~Q-I~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~L 190 (289)
T KOG4201|consen 121 L----EDLVAIRKIAGVKCPPKCLLRKEFI-----VDPYQ-IYEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPL 190 (289)
T ss_pred H----HHHHHHHHHhcCcCChHhHhHHHHc-----cCHHH-HHHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcce
Confidence 2 23334443 24555 2221000 00001 112445789988762 3454567788999999999876
Q ss_pred EEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC-CCCCch---HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC
Q 021527 197 LFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR-ASISGH---VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG 272 (311)
Q Consensus 197 ~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~-~~~~~~---~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G 272 (311)
.=+.. ++.|....+. |.-. + |+.... ..+..+ ...+++-++ -|+-++.-.||.||+|+..+...|
T Consensus 191 VEVn~---~eEm~ralei--Gakv-v---GvNNRnL~sFeVDlstTskL~E~i~--kDvilva~SGi~tpdDia~~q~~G 259 (289)
T KOG4201|consen 191 VEVND---EEEMQRALEI--GAKV-V---GVNNRNLHSFEVDLSTTSKLLEGIP--KDVILVALSGIFTPDDIAKYQKAG 259 (289)
T ss_pred eeecc---HHHHHHHHHh--CcEE-E---eecCCccceeeechhhHHHHHhhCc--cceEEEeccCCCCHHHHHHHHHcC
Confidence 54432 3445554443 3321 1 322211 111111 123333333 256677789999999999999999
Q ss_pred CcEEEEhhHhhch
Q 021527 273 ADGVIVGSAMVKL 285 (311)
Q Consensus 273 ADGvIVGSaiv~~ 285 (311)
..+|.||-++++.
T Consensus 260 V~avLVGEslmk~ 272 (289)
T KOG4201|consen 260 VKAVLVGESLMKQ 272 (289)
T ss_pred ceEEEecHHHHhc
Confidence 9999999999984
|
|
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.03 Score=50.65 Aligned_cols=187 Identities=14% Similarity=0.194 Sum_probs=104.8
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
..+.++.+.+.|||++=+-+.-..|= -++.+..-++.+.+.... .+|.++. | -..+.
T Consensus 10 ~~eda~~~~~~GaD~iGfIf~~~SpR----------------~V~~~~a~~i~~~~~~~~-~~VgVf~--~----~~~~~ 66 (207)
T PRK13958 10 TIKDVTAASQLPIDAIGFIHYEKSKR----------------HQTITQIKKLASAVPNHI-DKVCVVV--N----PDLTT 66 (207)
T ss_pred cHHHHHHHHHcCCCEEEEecCCCCcc----------------cCCHHHHHHHHHhCCCCC-CEEEEEe--C----CCHHH
Confidence 46788899999999998864222331 133333333444443221 2466654 3 23455
Q ss_pred HHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHc--CCCeEEEeCCCCh-HHHHHHHHHhCCceEEEEec---CCccCCC
Q 021527 159 FMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKN--KIELVLFTTPTTP-TDRMKAIVEASEGFVYLVSS---IGVTGAR 231 (311)
Q Consensus 159 fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~--gi~~I~lisp~t~-~eri~~i~~~a~gfiY~vs~---~G~TG~~ 231 (311)
..+.+.+.|.|.|=++. .+.+ +.+.+++. +++.+..+..... .+.+..+.... .++.+-+. .|.||..
T Consensus 67 i~~~~~~~~~d~vQLHG~e~~~----~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~-d~~LlDs~~~~~GGtG~~ 141 (207)
T PRK13958 67 IEHILSNTSINTIQLHGTESID----FIQEIKKKYSSIKIIKALPADENIIQNINKYKGFV-DLFIIDTPSVSYGGTGQT 141 (207)
T ss_pred HHHHHHhCCCCEEEECCCCCHH----HHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhC-CEEEEcCCCCCCCcCCcE
Confidence 56667789999998874 3333 33334432 3555544433211 11222222222 22222232 2444432
Q ss_pred CCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH--cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG--WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~--~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.+. +.++++ ...|++..+|++ |||+.++.. .+.+||=|=|.+... + ....+++++|++.++.
T Consensus 142 --~dw---~~~~~~---~~~p~iLAGGL~-peNV~~a~~~~~~p~gVDvsSGVE~~-G-----~KD~~ki~~f~~~v~~ 205 (207)
T PRK13958 142 --YDW---TILKHI---KDIPYLIAGGIN-SENIQTVEQLKLSHQGYDIASGIETN-G-----RKDINKMTAIVNIVKG 205 (207)
T ss_pred --eCh---HHhhhc---cCCCEEEECCCC-HHHHHHHHhcCCCCCEEEcccccCCC-C-----CCCHHHHHHHHHHHHh
Confidence 333 334443 346999999996 999999764 468999888877642 1 2346889999998875
|
|
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0028 Score=57.39 Aligned_cols=178 Identities=20% Similarity=0.323 Sum_probs=100.6
Q ss_pred HHHHHHHHHCCCCEEEEc--CCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 80 AEALKLLDSCGSDIIELG--VPYSDPLADGPVIQAAATRSLARGT-NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG--~PfsDP~aDGp~Iq~a~~~Al~~G~-~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
.+.++..+++|+=.+..= +|- | .|+ ..|+ ++.+ ..+|++|+..+++|+..-. + +
T Consensus 31 ~eQA~iAE~aGACaVmalervPa-----d--------iR~-~GgV~RMsD-P~mIKei~~aVsiPVMAk~------R--i 87 (296)
T KOG1606|consen 31 AEQARIAEEAGACAVMALERVPA-----D--------IRA-QGGVARMSD-PRMIKEIKNAVSIPVMAKV------R--I 87 (296)
T ss_pred HHHHHHHHhcCcceEeeeccCCH-----h--------HHh-cCCeeecCC-HHHHHHHHHhccchhhhhh------h--h
Confidence 578888889998877652 121 1 111 1121 1111 3599999999999976532 1 2
Q ss_pred HHHHH--HHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC---
Q 021527 157 DNFMS--TVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR--- 231 (311)
Q Consensus 157 ~~fi~--~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~--- 231 (311)
..|++ .+...|+|-+=-..+. ....+...+.+|+++.-+.+.....-|.++.|.+-+ ..|-.- ....||.-
T Consensus 88 GHFVEAQIlE~l~vDYiDESEvl--t~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGA-AMIRtk-GeagTG~v~Ea 163 (296)
T KOG1606|consen 88 GHFVEAQILEALGVDYIDESEVL--TPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGA-AMIRTK-GEAGTGDVSEA 163 (296)
T ss_pred hhhhHHHHHHHhccCccchhhhc--ccccccchhhhhcCcCceeeccccHHHHHHHHhhch-hhheec-cccCCCcHHHH
Confidence 34665 3556677754111000 012234556788887555555444445555553311 111111 01123320
Q ss_pred ---------------CCCCchH----------HHHHHHHhhcCCCcE--EEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 232 ---------------ASISGHV----------QTLLREIKESSTKPV--AVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 232 ---------------~~~~~~~----------~~~l~~vk~~~~~Pv--~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+..+.++ .+++++.++.-.+|| +..+||.||.|+..+.+.|+|||.|||.+.+
T Consensus 164 Vkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 164 VKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 0011111 345566666556786 3578999999999999999999999999987
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0066 Score=63.44 Aligned_cols=166 Identities=19% Similarity=0.255 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--------CCcEE-EEe
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--------SCPIA-LFT 146 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--------~iPii-lm~ 146 (311)
.++-+++++.|++.|+|.||+|+|+..|- |- +.++.+.+.. -+|.+ .++
T Consensus 107 ~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~-D~---------------------e~vr~i~~~~~~~v~~~~~v~~i~a~~ 164 (632)
T PLN02321 107 SKEKLDIARQLAKLGVDIIEAGFPIASPD-DL---------------------EAVKTIAKEVGNEVDEDGYVPVICGLS 164 (632)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCcCCCcc-HH---------------------HHHHHHHHhcccCCCccccceeeeeeh
Confidence 36789999999999999999999998773 21 2233332221 12322 222
Q ss_pred cCcchhccCHHHHHHHHHHcC--Cc--EEEe--c--CC--------Chhh----HHHHHHHHHHcCCCeEEEeCC---CC
Q 021527 147 YYNPILKRGVDNFMSTVRDIG--IR--GLVV--P--DV--------PLEE----TESLQKEAMKNKIELVLFTTP---TT 203 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aG--ad--Gvii--p--Dl--------p~ee----~~~~~~~~~~~gi~~I~lisp---~t 203 (311)
-.| .+.++.+.+++ ++ .+.+ + |+ ..|| ..+..+.++++|...+.+..+ .+
T Consensus 165 ra~-------~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rt 237 (632)
T PLN02321 165 RCN-------KKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRS 237 (632)
T ss_pred hcc-------HHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCC
Confidence 222 45566666663 22 2322 2 21 2233 556777889998754554332 23
Q ss_pred hHHHHHHHHHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-Cc-EEEee------CCCCHHHHHHHHHc
Q 021527 204 PTDRMKAIVEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KP-VAVGF------GISKPEHVQQVAGW 271 (311)
Q Consensus 204 ~~eri~~i~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~P-v~vGf------GIst~e~v~~v~~~ 271 (311)
+.+.+.++++. .-..+++.. ++|. ..|..+.++++.+++.++ .+ +.+++ |...+ +.-..+++
T Consensus 238 d~d~l~~~~~~a~~aGa~~I~L~D---TvG~--~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvA-NslaAv~A 311 (632)
T PLN02321 238 DPEFLYRILGEVIKAGATTLNIPD---TVGY--TLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTA-NTLAGAHA 311 (632)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc---cccC--CCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHH-HHHHHHHh
Confidence 45555555443 223345544 3443 356778899999988753 22 44443 44433 34455678
Q ss_pred CCcEE
Q 021527 272 GADGV 276 (311)
Q Consensus 272 GADGv 276 (311)
||+.|
T Consensus 312 GA~~V 316 (632)
T PLN02321 312 GARQV 316 (632)
T ss_pred CCCEE
Confidence 99876
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0037 Score=61.15 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCHHH----HHHHHHHhhccCCCcEEEEecC
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNFNA----ILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~~~----~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
.+.+.++.+.++|.|+|||- -+.|-.+.+- +.|--+.|=++++ ++++++.||+.+.-.+ +..-.
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh------~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~-igvRi 232 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELH------SAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADR-IGIRI 232 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEc------ccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCe-EEEEE
Confidence 57888999999999999994 2334444332 2233334444443 3567777777654222 22222
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~ 227 (311)
|+.. ... +.+ .....+| ..++.+.+.+.|++.+-+..+..
T Consensus 233 s~~~------~~~-----~~~----~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~------------------------ 273 (362)
T PRK10605 233 SPLG------TFN-----NVD----NGPNEEADALYLIEQLGKRGIAYLHMSEPDW------------------------ 273 (362)
T ss_pred CCcc------ccc-----cCC----CCCCHHHHHHHHHHHHHHcCCCEEEeccccc------------------------
Confidence 3210 000 011 1123456 57778888888888776543210
Q ss_pred cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 228 TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.+. .... ..+.+++|+.+++||++++++ +++++.++++.| +|.|-+|-+++.
T Consensus 274 ~~~-~~~~---~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 274 AGG-EPYS---DAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred cCC-cccc---HHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 000 0111 245678888889999998886 799999999988 999999988775
|
|
| >KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00047 Score=61.53 Aligned_cols=161 Identities=19% Similarity=0.252 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCc-chhccC
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYN-PILKRG 155 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n-~i~~~g 155 (311)
+.+|-+...+++|+|.||++- || +.|.+.. +-.++.++..+.+|+..|.--. .-|-|.
T Consensus 17 Ds~eSA~nAe~GGAdRiElCS------------------aL~eGGlTPS--vG~l~~~k~~~~iP~ycMiRpR~GDFvYs 76 (255)
T KOG4013|consen 17 DSLESAENAEAGGADRIELCS------------------ALQEGGLTPS--VGFLSILKYKYPIPLYCMIRPRAGDFVYS 76 (255)
T ss_pred hhHHHHHhHhhcCccHhHHhh------------------hhccCCCCCc--chhhhhhhcccccceEEEEecCCCCcccc
Confidence 457888888999999999971 34 2344432 2356667777889999994110 011122
Q ss_pred H------HHHHHHHHHcCCcEEEecCCChh------hHHHHHHHHHHcCCCeEEE-----e--CCCChHHHHHHHHHhCC
Q 021527 156 V------DNFMSTVRDIGIRGLVVPDVPLE------ETESLQKEAMKNKIELVLF-----T--TPTTPTDRMKAIVEASE 216 (311)
Q Consensus 156 ~------~~fi~~~~~aGadGviipDlp~e------e~~~~~~~~~~~gi~~I~l-----i--sp~t~~eri~~i~~~a~ 216 (311)
- ...++.++++|+||+++.-|..+ .+..+...++- + +|.| + .+.+-.|. .+ ..-
T Consensus 77 d~Em~a~~~Dv~llk~~GAdGfVFGaLt~dgsid~~~C~si~~~~rp--l-PVTFHRAfD~~~D~k~~lE~--~l--~~l 149 (255)
T KOG4013|consen 77 DDEMAANMEDVELLKKAGADGFVFGALTSDGSIDRTSCQSIIETARP--L-PVTFHRAFDVAYDWKTCLED--AL--LDL 149 (255)
T ss_pred hHHHHHHHHHHHHHHHcCCCceEEeecCCCCCcCHHHHHHHHHhcCC--C-ceeeeeehhhhcCHHHHHHH--HH--HHh
Confidence 2 24567789999999999655432 23334443332 2 2322 1 12222221 11 124
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGW 271 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~ 271 (311)
||--+. ++|.+...-+. ...|+++-+.. ++-|+-|.||++ .++++++++
T Consensus 150 GF~rvL----tSG~~psAldG-v~~i~~lie~hkg~i~VmpG~Gi~~-sNl~~ile~ 200 (255)
T KOG4013|consen 150 GFKRVL----TSGQEPSALDG-VYIIRELIELHKGKIDVMPGCGINS-SNLANILEW 200 (255)
T ss_pred hHHHHh----hcCCCcccccc-hHHHHHHHHHhcCCEEEecCCCcch-HHHHHHHhh
Confidence 553222 24443322222 24566655543 567888999986 788888876
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0034 Score=61.50 Aligned_cols=161 Identities=22% Similarity=0.303 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCHHHH----HHHHHHhhccCCC--cEEEEe
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNFNAI----LSMLKEVVPQMSC--PIALFT 146 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~~~~----~~~i~~ir~~~~i--Piilm~ 146 (311)
.+.+.++...++|.|+|||= =+.|-.|++- ++|--+.|=++++- +++++.+|+.+.- ||.+--
T Consensus 150 ~f~~AA~rA~~AGFDgVEIH------~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rl 223 (363)
T COG1902 150 DFARAARRAKEAGFDGVEIH------GAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRL 223 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEe------eccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 47888889999999999993 2445555442 34444555555543 5566666766543 555532
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcC-CCeEEEeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK-IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~g-i~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
+..++ . .++ -+.+||..++.+.+++.| ++.+-++.+..... ....
T Consensus 224 --------s~~d~-~------~~~----g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~---------~~~~------ 269 (363)
T COG1902 224 --------SPDDF-F------DGG----GLTIEEAVELAKALEEAGLVDYIHVSEGGYERG---------GTIT------ 269 (363)
T ss_pred --------Ccccc-C------CCC----CCCHHHHHHHHHHHHhcCCccEEEeecccccCC---------CCcc------
Confidence 22211 0 000 234578888889999999 68877776553210 0000
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 226 GVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..+ +.....+..++|..+.+|+++-++|++++++.++++.| ||-|-+|-+|+.
T Consensus 270 -~~~-----~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 270 -VSG-----PGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred -ccc-----cchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 000 11223567778888889999999999999999999998 999999999876
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0043 Score=60.88 Aligned_cols=39 Identities=33% Similarity=0.312 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.++.+.+++ .++||++ ++|.|+++++++.++|||+|.||
T Consensus 177 ~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 177 LNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred HHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEEC
Confidence 344444444 5899977 66999999999999999999998
|
|
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.024 Score=53.22 Aligned_cols=210 Identities=13% Similarity=0.234 Sum_probs=132.1
Q ss_pred eCCCCC-hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE-ec
Q 021527 70 TAGDPD-LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF-TY 147 (311)
Q Consensus 70 ~~G~P~-~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm-~Y 147 (311)
.|-..+ .+.+.+.++.|.+.|+|.|-+- |||- |..-...+++.+.++++.++|.+.- +.
T Consensus 7 PP~~~~~~~~l~~~~~~l~~~~pd~isvT--------~~~~-----------~~~~~~t~~~a~~l~~~~g~~~i~Hlt~ 67 (272)
T TIGR00676 7 PPKTDEGEENLWETVDRLSPLDPDFVSVT--------YGAG-----------GSTRDRTVRIVRRIKKETGIPTVPHLTC 67 (272)
T ss_pred CcCCchhHHHHHHHHHHHhcCCCCEEEec--------cCCC-----------CCcHHHHHHHHHHHHHhcCCCeeEEeee
Confidence 333444 3788899999999999999983 2211 1122244567788887777775443 22
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEe--cCCC----------hhhHHHHHHHHHHc-C-CCeEEEeCCC----C--hHHH
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVV--PDVP----------LEETESLQKEAMKN-K-IELVLFTTPT----T--PTDR 207 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGvii--pDlp----------~ee~~~~~~~~~~~-g-i~~I~lisp~----t--~~er 207 (311)
.+ ..+..++..+..+.+.|++.+++ .|-| +..+.++.+.+++. + +..-.-..|. . .++.
T Consensus 68 r~-~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~ 146 (272)
T TIGR00676 68 IG-ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEED 146 (272)
T ss_pred cC-CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHH
Confidence 22 23345677888899999998875 3443 23466777777764 2 2222223333 2 1222
Q ss_pred HHHHH-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEeeC-CCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 208 MKAIV-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGFG-ISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 208 i~~i~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGfG-Ist~e~v~~v~~~GADGvIVGSaiv 283 (311)
++.+. +...|..|++|-. -.+ ..+.++++++++. .++||++|+- +.+..++.++.++ -||-|=..+.
T Consensus 147 ~~~L~~K~~aGA~f~iTQ~-------~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~--~Gv~vP~~~~ 217 (272)
T TIGR00676 147 IENLKRKVDAGADYAITQL-------FFDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAER--CGAEIPAWLV 217 (272)
T ss_pred HHHHHHHHHcCCCeEeecc-------ccCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhc--cCCCCCHHHH
Confidence 33222 2344656666422 223 3467888888875 5799999976 7888878777764 6999999999
Q ss_pred chhhhcCCc-----hhHHHHHHHHHHHHHh
Q 021527 284 KLLGEAQSP-----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 284 ~~~~~~~~~-----~~~~~~~~~~~~~l~~ 308 (311)
+.++...+. +.+++...++++++++
T Consensus 218 ~~l~~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 218 KRLEKYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999754332 2467777777777764
|
This protein is an FAD-containing flavoprotein. |
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0018 Score=57.96 Aligned_cols=185 Identities=21% Similarity=0.274 Sum_probs=102.5
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC-cEEEEecCcchhccCHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC-PIALFTYYNPILKRGVD 157 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i-Piilm~Y~n~i~~~g~~ 157 (311)
..+.++.+.+.|+|++=+-+-.+.|- -++. +.++++.+.... ++.++. | -..+
T Consensus 8 ~~~da~~~~~~g~d~~Gfi~~~~S~R----------------~v~~----~~a~~l~~~~~~~~VgVf~--~----~~~~ 61 (197)
T PF00697_consen 8 RPEDARLAAELGADYLGFIFYPKSPR----------------YVSP----DQARELVSAVPPKIVGVFV--N----QSPE 61 (197)
T ss_dssp SHHHHHHHHHHTSSEEEEE--TTCTT----------------B--H----HHHHHHHCCSSSSEEEEES--S----S-HH
T ss_pred cHHHHHHHHHcCCCEEeeecCCCCCC----------------ccCH----HHHHHHHHhcCCCEEEEEc--C----CCHH
Confidence 46888999999999987753222231 1222 344455444332 455543 4 2345
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC-ceEEEEecCCccCCCCCCCc
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE-GFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~-gfiY~vs~~G~TG~~~~~~~ 236 (311)
+.++.+.+.+.|.|=++.- |..++...++ .++..+..+......+..+.+..... .++.+-+..|.||.. ++.
T Consensus 62 ~I~~~~~~~~ld~vQLHG~---e~~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~~--~dw 135 (197)
T PF00697_consen 62 EILEIVEELGLDVVQLHGD---ESPEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGKT--FDW 135 (197)
T ss_dssp HHHHHHHHCTESEEEE-SG---G-HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS-----G
T ss_pred HHHHHHHHcCCCEEEECCC---CCHHHHHHhh-cCceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCcc--cCH
Confidence 6677788999999988743 2334444444 46665554433321111222211111 333344566667753 444
Q ss_pred hHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHH
Q 021527 237 HVQTLLREIKES-STKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 237 ~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+ .++.+.+. .+.|+++++||+ |+|+.++.+ .+.+||=|=|.+...-+ ....+++++|++
T Consensus 136 ~---~~~~~~~~~~~~p~iLAGGl~-p~NV~~ai~~~~p~gvDvsSGvE~~pG-----~KD~~ki~~fv~ 196 (197)
T PF00697_consen 136 S---LLKKIVESYSPKPVILAGGLN-PENVREAIRQVRPYGVDVSSGVETSPG-----VKDPEKIKAFVE 196 (197)
T ss_dssp G---GGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETT-----EE-HHHHHHHHH
T ss_pred H---HhhhhhhhcccCcEEEEcCCC-hHHHHHHHHhcCceEEEeCCccccCCC-----CCCHHHHHHHHh
Confidence 3 24444332 378999999997 899999998 77999999888877432 234678888876
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.022 Score=53.44 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=74.1
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~~ 128 (311)
.|.++++++++ +..+++=|. -.++.++++|+|+|-.| |+ . +...+. ..+++++.+
T Consensus 6 ~lr~~~~~g~~--i~~~tayD~------~sArl~e~aG~d~i~vG--------ds-~----~~~~lG~~Dt~~vtl~em~ 64 (264)
T PRK00311 6 DLQKMKQEGEK--IVMLTAYDY------PFAKLFDEAGVDVILVG--------DS-L----GMVVLGYDSTLPVTLDDMI 64 (264)
T ss_pred HHHHHHhCCCC--EEEEeCCCH------HHHHHHHHcCCCEEEEC--------HH-H----HHHHcCCCCCCCcCHHHHH
Confidence 45666666554 334444444 56778899999999876 11 0 001111 126889999
Q ss_pred HHHHHhhccCCCc-EEEEe-cCcchhccCHH----HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE
Q 021527 129 SMLKEVVPQMSCP-IALFT-YYNPILKRGVD----NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 129 ~~i~~ir~~~~iP-iilm~-Y~n~i~~~g~~----~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I 196 (311)
..++.|++..+.| |+... |-+ |..+.+ +-.+.++++|++||-+=|- ++..+..+.+.+.||.++
T Consensus 65 ~h~~~V~r~~~~p~vvaD~pfg~--y~~~~~~av~~a~r~~~~aGa~aVkiEdg--~~~~~~I~al~~agIpV~ 134 (264)
T PRK00311 65 YHTKAVARGAPRALVVADMPFGS--YQASPEQALRNAGRLMKEAGAHAVKLEGG--EEVAETIKRLVERGIPVM 134 (264)
T ss_pred HHHHHHHhcCCCCcEEEeCCCCC--ccCCHHHHHHHHHHHHHHhCCeEEEEcCc--HHHHHHHHHHHHCCCCEe
Confidence 9999998888886 55522 211 111222 2345556699999999875 455566777778898765
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0028 Score=61.35 Aligned_cols=165 Identities=20% Similarity=0.242 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCHHHH----HHHHHHhhccC--CCcEEEEe
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNFNAI----LSMLKEVVPQM--SCPIALFT 146 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~~~~----~~~i~~ir~~~--~iPiilm~ 146 (311)
.+.+.++.+.++|.|+|||- -+.|-.+++- +.|--+.|=++++- +++++.||+.+ +.||.+--
T Consensus 150 ~f~~AA~~A~~AGfDGVEIH------~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rl 223 (341)
T PF00724_consen 150 DFAQAARRAKEAGFDGVEIH------AAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRL 223 (341)
T ss_dssp HHHHHHHHHHHTT-SEEEEE------ESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred HHHHHHHHHHHhccCeEeec------ccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEE
Confidence 47788889999999999993 2345555443 34444555555543 55666677653 45555543
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
..+.....| +..+|..++...+.+.|++.+-+..-. ++.... ..
T Consensus 224 s~~~~~~~g--------------------~~~~e~~~~~~~~~~~~~d~~~~~~~~---------------~~~~~~-~~ 267 (341)
T PF00724_consen 224 SPDDFVEGG--------------------ITLEETIEIAKLLEELGVDFLDVSHGS---------------YVHWSE-PR 267 (341)
T ss_dssp ETTCSSTTS--------------------HHSHHHHHHHHHHHHHHHTTEEEEEES---------------EEEEEB-TS
T ss_pred eeecccCCC--------------------CchHHHHHHHHHHHHHhhhhccccccc---------------cccccc-cc
Confidence 221111111 122444445555555555543221100 111110 00
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.+........-..++.+.+|+.+++||++.+||++++++.++++.| +|.|-+|-+++.
T Consensus 268 ~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 268 PSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp STTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred cccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 1111111111123567888888899999999999999898888766 999999988775
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0022 Score=58.35 Aligned_cols=102 Identities=24% Similarity=0.279 Sum_probs=68.1
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
-...++.+.+.++++.+.+ .+|++|+|.|| + +..|.. .+.+.++.+++.. .||++..-..
T Consensus 6 ALD~~~~~~a~~i~~~~~~-~v~~iKvG~~l---------~-------~~~G~~--~l~~~i~~l~~~~-~~I~~D~K~~ 65 (226)
T PF00215_consen 6 ALDPTDLEEALRIADELGD-YVDIIKVGTPL---------F-------LAYGLE--ALPEIIEELKERG-KPIFLDLKLG 65 (226)
T ss_dssp EE-SSSHHHHHHHHHHHGG-GSSEEEEEHHH---------H-------HHHCHH--HHHHHHHHHHHTT-SEEEEEEEE-
T ss_pred EeCCCCHHHHHHHHHHhcC-cceEEEEChHH---------H-------hcCChh--hHHHHHHHHHHhc-CCEeeeeeec
Confidence 3445667899999999888 89999999666 1 122311 3456777887765 8888876443
Q ss_pred chhccCHHHHHH---HHHHcCCcEEEecCCCh-hhHHHHHHHHHHcC
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGLVVPDVPL-EETESLQKEAMKNK 192 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGviipDlp~-ee~~~~~~~~~~~g 192 (311)
++-.+ ..++++ .+.+.|+|.+.+.-+.- +-...+.+.++++|
T Consensus 66 Dig~t-~~~~~~~~~~~~~~gaD~vTv~~~~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 66 DIGNT-VARYAEAGFAAFELGADAVTVHPFAGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp SSHHH-HHHHHHSCHHHHTTTESEEEEEGTTHHHHHHHHHHHHHHTT
T ss_pred ccchH-HHHHHHHhhhhhcCCCcEEEEeccCCHHHHHHHHHHHhccC
Confidence 33221 134454 45789999999975543 34567888888887
|
In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A .... |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0043 Score=60.79 Aligned_cols=164 Identities=16% Similarity=0.096 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCH----HHHHHHHHHhhccCCCcEEEEecC
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNF----NAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~----~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
.+.+.++.+.++|.|+|||- -+-|-.+++- ++|.-+.|-++ +=++++++.||+.+..++.+..
T Consensus 151 ~f~~AA~ra~~aGfDgVEih------~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~v-- 222 (370)
T cd02929 151 WYVDAALRARDAGFDIVYVY------AAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVAT-- 222 (370)
T ss_pred HHHHHHHHHHHcCCCEEEEc------ccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEE--
Confidence 57788899999999999993 1222222211 12222334333 3346788888887654433322
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
+.+.+++.. + .| ....+|..++.+.+.+. ++.+-+..- .... .+. ....
T Consensus 223 ----Rls~~~~~~-----~-~g----~~~~~e~~~~~~~l~~~-~D~i~vs~g-~~~~---------~~~---~~~~--- 271 (370)
T cd02929 223 ----RFSVDELIG-----P-GG----IESEGEGVEFVEMLDEL-PDLWDVNVG-DWAN---------DGE---DSRF--- 271 (370)
T ss_pred ----EecHHHhcC-----C-CC----CCCHHHHHHHHHHHHhh-CCEEEecCC-Cccc---------ccc---cccc---
Confidence 222222211 0 01 12346666666666553 454433221 1000 000 0000
Q ss_pred CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
...+. ..++.+++|+.+++||++.+||++++++.++++.| +|.|-+|=+++.
T Consensus 272 -~~~~~---~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 272 -YPEGH---QEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred -CCccc---cHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 00011 23567888998999999999999999999999977 999999977765
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.03 Score=52.68 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=107.6
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
||-- |.-|.+.+.+.++.+.+.|+|.|-++--.. ++ .-.+.++..++++.+.+..+ +++.-.
T Consensus 11 Pf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstG----E~------------~~Lt~eEr~~l~~~~~~~~~-~vi~gv 72 (279)
T cd00953 11 PFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTG----LG------------PSLSFQEKLELLKAYSDITD-KVIFQV 72 (279)
T ss_pred CcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCC----Cc------------ccCCHHHHHHHHHHHHHHcC-CEEEEe
Confidence 4444 889999999999999999999998841110 11 11455666777777766543 443332
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEe--cCC-C---hhhHHHHHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHHhC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVV--PDV-P---LEETESLQKEAMKNKIELVLFTTPT-----TPTDRMKAIVEAS 215 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGvii--pDl-p---~ee~~~~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~~a 215 (311)
-.+.. ...-+..+.+.+.|+|++++ |-. + .++..++...+.+ ++.++++=.|. .+.+-++++++..
T Consensus 73 g~~~~--~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~-~lpv~iYn~P~~tg~~l~~~~l~~L~~~~ 149 (279)
T cd00953 73 GSLNL--EESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS-PYPTFIYNYPKATGYDINARMAKEIKKAG 149 (279)
T ss_pred CcCCH--HHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh-cCCEEEEeCccccCCCCCHHHHHHHHhcC
Confidence 21111 11234667789999999998 432 2 2455566666655 88777654442 2356777776544
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..++.+=.. +| ++ +.+.++++.. +..|+.|. -+.+-..+..||+|+|.|++
T Consensus 150 p~vvgiK~s---~~-------d~-~~~~~~~~~~~~~~v~~G~----d~~~~~~l~~Ga~G~i~~~~ 201 (279)
T cd00953 150 GDIIGVKDT---NE-------DI-SHMLEYKRLVPDFKVYSGP----DSLIFSALRSGLDGSVAAAS 201 (279)
T ss_pred CCEEEEEeC---cc-------CH-HHHHHHHHhCCCeEEEEcc----HHHHHHHHHcCCCeEEechh
Confidence 555554211 11 12 2333343322 55566553 25666777899999999977
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK14565 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.003 Score=58.42 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=77.8
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHHH----HHHHHcCCCeEEEeCCCChHHHH--------HHHHHh-----CCc
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESLQ----KEAMKNKIELVLFTTPTTPTDRM--------KAIVEA-----SEG 217 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~~----~~~~~~gi~~I~lisp~t~~eri--------~~i~~~-----a~g 217 (311)
-.+.+++.|++.+++..- .+.|..+.. ..+.++|+.+|+-+.-+ .++|- ....+. ..-
T Consensus 77 S~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~-~e~r~~~~~~~~~~~Ql~~~l~~~~~i 155 (237)
T PRK14565 77 SAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGET-LEDRENGMTKDVLLEQCSNCLPKHGEF 155 (237)
T ss_pred CHHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCC-HHHHHccChHHHHHHHHHHHhcCCCCE
Confidence 456788899999998631 123444444 66788899888776643 33331 111110 112
Q ss_pred eEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 218 FVYLVS--SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
.+-|.+ ..| ||.. ..++...+..+.+|+.. +++|++|++|+ ++++..+... +.||+-||++-.+
T Consensus 156 vIAYEPvWAIG-tG~~-a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~-~~N~~~l~~~~~iDG~LvG~asl~ 223 (237)
T PRK14565 156 IIAYEPVWAIG-GSTI-PSNDAIAEAFEIIRSYDSKSHIIYGGSVN-QENIRDLKSINQLSGVLVGSASLD 223 (237)
T ss_pred EEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHhCCCceEEEcCccC-HhhHHHHhcCCCCCEEEEechhhc
Confidence 232322 233 5542 34555677777788864 68999999997 7999998864 7999999999886
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0045 Score=59.79 Aligned_cols=128 Identities=14% Similarity=0.152 Sum_probs=82.5
Q ss_pred cCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH---HHHHHHHH
Q 021527 137 QMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT---DRMKAIVE 213 (311)
Q Consensus 137 ~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~---eri~~i~~ 213 (311)
.++.|+++-.- ..---+++.+.+.+.|.-+++.= +.+|+...+.+..+..++ +..++..+.+ +|+.++.+
T Consensus 35 ~l~~P~~inAM----~t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~r~~~~~~l--~v~~~vg~~~~~~~~~~~Lv~ 107 (326)
T PRK05458 35 TFKLPVVPANM----QTIIDEKIAEWLAENGYFYIMHR-FDPEARIPFIKDMHEQGL--IASISVGVKDDEYDFVDQLAA 107 (326)
T ss_pred EecCcEEEecc----cchhHHHHHHHHHHcCCEEEEec-CCHHHHHHHHHhcccccc--EEEEEecCCHHHHHHHHHHHh
Confidence 46788887433 21112456677888898887665 667877777755554455 3334444433 56666666
Q ss_pred hCC--ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 214 ASE--GFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 214 ~a~--gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
..- .++-+-+.. +-...+.++++++|+..+ +||++ +.|.|+|+++.+.++|+|++.||
T Consensus 108 ag~~~d~i~iD~a~-------gh~~~~~e~I~~ir~~~p~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 108 EGLTPEYITIDIAH-------GHSDSVINMIQHIKKHLPETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred cCCCCCEEEEECCC-------CchHHHHHHHHHHHhhCCCCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 422 333332222 223457789999999875 77755 45779999999999999999988
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.049 Score=50.46 Aligned_cols=208 Identities=15% Similarity=0.137 Sum_probs=116.0
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH--cCCCHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA--RGTNFNAILSML 131 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~--~G~~~~~~~~~i 131 (311)
|.+.|++++ .+..+++=|+ -.++.++++|+|.|-+| |..+.. ..-+. ..+++++.+..+
T Consensus 4 ~~~~~~~~~--~i~~~~ayD~------~sA~i~e~aG~dai~v~---------~s~~a~--~~G~pD~~~vtl~em~~~~ 64 (240)
T cd06556 4 LQKYKQEKE--RFATLTAYDY------SMAKQFADAGLNVMLVG---------DSQGMT--VAGYDDTLPYPVNDVPYHV 64 (240)
T ss_pred HHHHHhCCC--eEEEecCCCH------HHHHHHHHcCCCEEEEC---------hHHHHH--hcCCCCCCCcCHHHHHHHH
Confidence 344443443 3334455555 56677888999999997 333321 11111 126889999999
Q ss_pred HHhhccCC-CcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe--CCCC--
Q 021527 132 KEVVPQMS-CPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT--TPTT-- 203 (311)
Q Consensus 132 ~~ir~~~~-iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li--sp~t-- 203 (311)
+.|++..+ +||+.. +|+++.. ...+.++++.++|++||.+=|-. |..+..+.+++.++-++--+ .|.+
T Consensus 65 ~~I~r~~~~~pviaD~~~G~g~~~~--~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~~a~i~ViaRtd~~pq~~~ 140 (240)
T cd06556 65 RAVRRGAPLALIVADLPFGAYGAPT--AAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLTAAAVPVIAHTGLTPQSVN 140 (240)
T ss_pred HHHHhhCCCCCEEEeCCCCCCcCHH--HHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHHHcCCeEEEEeCCchhhhh
Confidence 99998765 799987 4665321 23456778888999999998862 44445566677775322111 1210
Q ss_pred -----------h------HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHH
Q 021527 204 -----------P------TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQ 266 (311)
Q Consensus 204 -----------~------~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~ 266 (311)
. .+|.+.+.+..-..+++. ++ + .+.++++.+..++|++. .|-.+
T Consensus 141 ~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e---~~-------~---~e~~~~i~~~~~~P~~~-~gag~----- 201 (240)
T cd06556 141 TSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME---CV-------P---VELAKQITEALAIPLAG-IGAGS----- 201 (240)
T ss_pred ccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc---CC-------C---HHHHHHHHHhCCCCEEE-EecCc-----
Confidence 0 133344433222334432 11 1 36688888888999843 33332
Q ss_pred HHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHhh
Q 021527 267 QVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 267 ~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
|.||-+.=+.=+--+.+.. .....+...++.+.++.+
T Consensus 202 -----~~dgq~lv~~d~lg~~~~~-~p~f~~~~~~~~~~~~~~ 238 (240)
T cd06556 202 -----GTDGQFLVLADAFGITGGH-IPKFAKNFHAETGDIRAA 238 (240)
T ss_pred -----CCCceEEeHHhhhcccCCC-CCchHHHHhhhHHHHHHH
Confidence 5787766544333332211 123344555555555544
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.16 Score=48.97 Aligned_cols=213 Identities=16% Similarity=0.201 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC-HHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN-FNA 126 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~-~~~ 126 (311)
..+.+.++..++++ -++-.|=+ .+++...-++++.++.++.+|--..|-.-.+ .|.+ +..
T Consensus 10 v~~k~lL~~A~~~~-yAV~AfN~---~n~e~~~avi~AAee~~sPvIlq~s~~~~~~---------------~g~~~~~~ 70 (321)
T PRK07084 10 VNTREMFAKAVKGG-YAIPAYNF---NNMEQLQAIIQACVETKSPVILQVSKGARKY---------------ANATLLRY 70 (321)
T ss_pred cCHHHHHHHHHHCC-ceEEEEEe---CCHHHHHHHHHHHHHhCCCEEEEechhHHhh---------------CCchHHHH
Confidence 45778888766554 45555543 4678888899999999888875542211111 1211 233
Q ss_pred HHHHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE--
Q 021527 127 ILSMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV-- 196 (311)
Q Consensus 127 ~~~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I-- 196 (311)
+...+++..++. ++||.+.. + +..-.+++..+.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+=
T Consensus 71 ~~~~~~~~a~~a~~~VPV~lHL--D---Hg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaE 145 (321)
T PRK07084 71 MAQGAVEYAKELGCPIPIVLHL--D---HGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGE 145 (321)
T ss_pred HHHHHHHHHHHcCCCCcEEEEC--C---CCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 445556666554 79998853 1 222346889999999999988 5789887 6678888888886321
Q ss_pred --EEe--------CC--CChHHHHHHHHHhCCceEEE-E---ecCCccCCCCC--CCchHHHHHHHHhhcC-CCcEEE--
Q 021527 197 --LFT--------TP--TTPTDRMKAIVEASEGFVYL-V---SSIGVTGARAS--ISGHVQTLLREIKESS-TKPVAV-- 255 (311)
Q Consensus 197 --~li--------sp--~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~--~~~~~~~~l~~vk~~~-~~Pv~v-- 255 (311)
.+- .. -|+++..++..+. .|...+ + +..|..-...+ -+.=-.+.++++++.+ ++|++.
T Consensus 146 lG~igg~ed~~~~~~~~~T~peeA~~Fv~~-TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHG 224 (321)
T PRK07084 146 LGVLAGVEDEVSAEHHTYTQPEEVEDFVKK-TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHG 224 (321)
T ss_pred EeeecCccCCccCcccccCCHHHHHHHHHH-hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeC
Confidence 010 01 2334555566553 344444 2 34443321000 1111236788998888 799866
Q ss_pred ee---------------------CCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 256 GF---------------------GISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 256 Gf---------------------GIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|. |+. .|++++..+.|.-=|=|+|.+....
T Consensus 225 gSg~~~~~~~~~~~~g~~~~~~~Gi~-~e~~~kai~~GI~KINi~Tdl~~a~ 275 (321)
T PRK07084 225 SSSVPQEYVKTINEYGGKLKDAIGIP-EEQLRKAAKSAVCKINIDSDGRLAM 275 (321)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCC-HHHHHHHHHcCCceeccchHHHHHH
Confidence 55 554 6999999999999999999886544
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00099 Score=68.35 Aligned_cols=79 Identities=25% Similarity=0.243 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCC--CCchHHHHHHHHhhcCCCcEEEeeCCCCH-----------HHHHHHHH
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARAS--ISGHVQTLLREIKESSTKPVAVGFGISKP-----------EHVQQVAG 270 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~--~~~~~~~~l~~vk~~~~~Pv~vGfGIst~-----------e~v~~v~~ 270 (311)
|.+..+.+.+..-..+-++.. |+++.+ ......+.|+++.+.+.+|+.||+||++. |+++++++
T Consensus 269 Pve~a~~y~~~Gadel~~~Di---~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~ 345 (538)
T PLN02617 269 PVELAGQYYKDGADEVAFLNI---TGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR 345 (538)
T ss_pred HHHHHHHHHHcCCCEEEEEEC---CCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH
Confidence 445556665533333444443 444332 22335678999989889999999999997 66999999
Q ss_pred cCCcEEEEhhHhhch
Q 021527 271 WGADGVIVGSAMVKL 285 (311)
Q Consensus 271 ~GADGvIVGSaiv~~ 285 (311)
.|||=|+|||+.++.
T Consensus 346 ~GadkV~i~s~Av~~ 360 (538)
T PLN02617 346 SGADKISIGSDAVYA 360 (538)
T ss_pred cCCCEEEEChHHHhC
Confidence 999999999988874
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.001 Score=60.91 Aligned_cols=75 Identities=27% Similarity=0.375 Sum_probs=55.0
Q ss_pred HHHHHHHHHh-CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 205 TDRMKAIVEA-SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 205 ~eri~~i~~~-a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
.+-.+.+.+. ++..+++- +|-+..+ .....+.++++.+...+|+.||+||++.|++++++.+|||=|=|.|+-+
T Consensus 33 VelA~~Y~e~GADElvFlD----ItAs~~g-r~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv 107 (256)
T COG0107 33 VELAKRYNEEGADELVFLD----ITASSEG-RETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAV 107 (256)
T ss_pred HHHHHHHHHcCCCeEEEEe----ccccccc-chhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHh
Confidence 3444444443 44555552 2333222 2235688999999999999999999999999999999999999999877
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 108 ~ 108 (256)
T COG0107 108 K 108 (256)
T ss_pred c
Confidence 6
|
|
| >TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.051 Score=51.39 Aligned_cols=204 Identities=14% Similarity=0.236 Sum_probs=131.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE-ecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF-TYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm-~Y~n~i~~~ 154 (311)
.+.+.+.++.|.+.+.|.+-+- | | ..|.+.+..+.+.+.|+++..+|.+.- +..+ ..+.
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT--~------~-----------~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~-~~~~ 74 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDIT--W------G-----------AGGTTAELTLTIASRAQNVVGVETCMHLTCTN-MPIE 74 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEec--c------C-----------CCCcchhhHHHHHHHHHHhcCCCeeEEeccCC-CCHH
Confidence 4678888899999999999884 2 1 013344556778889988878876553 2222 2233
Q ss_pred CHHHHHHHHHHcCCcEEEe--cCCC------------hhhHHHHHHHHHHc-C--CCeEEEeCCCC----h--HHHHHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVV--PDVP------------LEETESLQKEAMKN-K--IELVLFTTPTT----P--TDRMKAI 211 (311)
Q Consensus 155 g~~~fi~~~~~aGadGvii--pDlp------------~ee~~~~~~~~~~~-g--i~~I~lisp~t----~--~eri~~i 211 (311)
.++.++..+.+.|++.+++ .|-| ++.+.++.+.+++. + +..-.-..|.- + +..+..+
T Consensus 75 ~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L 154 (281)
T TIGR00677 75 MIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYL 154 (281)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHH
Confidence 5678888899999998877 3553 12366677777663 3 22222234421 1 1212222
Q ss_pred H-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEeeC-CCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 212 V-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGFG-ISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 212 ~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGfG-Ist~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
. +...|..|++|-. -.+ ..+.++++++++. .++||+.|.- +.|..++..+.++ -|+-|-..+.+.++
T Consensus 155 ~~Ki~aGA~f~iTQ~-------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~--~Gi~vP~~l~~~l~ 225 (281)
T TIGR00677 155 KEKVDAGADFIITQL-------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKW--SKTKIPQEIMSRLE 225 (281)
T ss_pred HHHHHcCCCEeeccc-------eecHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhc--CCCCCCHHHHHHHH
Confidence 2 2346766776532 233 3467899999886 5899999964 5777778777554 69999999999997
Q ss_pred hcCCc-h----hHHHHHHHHHHHHHh
Q 021527 288 EAQSP-E----EGLKELEKFAKSLKS 308 (311)
Q Consensus 288 ~~~~~-~----~~~~~~~~~~~~l~~ 308 (311)
+..+. + .+++-..++++++++
T Consensus 226 ~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 226 PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54332 2 467777778888765
|
This protein is an FAD-containing flavoprotein. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.01 Score=58.04 Aligned_cols=159 Identities=19% Similarity=0.172 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHH-----HHHHHcCCCHH----HHHHHHHHhhccC--CCcEEEEe
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAA-----TRSLARGTNFN----AILSMLKEVVPQM--SCPIALFT 146 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~-----~~Al~~G~~~~----~~~~~i~~ir~~~--~iPiilm~ 146 (311)
.+.+.++.+.++|.|+|||- -+.|-.+.+-. .|--+.|-+++ =++++++.||+.+ +.||.+-.
T Consensus 145 ~f~~AA~~a~~aGfDgVeih------~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRi 218 (361)
T cd04747 145 AFARAAADARRLGFDGIELH------GAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRF 218 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEe------cccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 57888899999999999993 12232222211 11122333332 3467888888875 46777632
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
|+... .++ +.. ..+.++|..++.+.+.+.|++.+-+..... ....
T Consensus 219 --s~~~~---~~~-------~~~----~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~-----------------~~~~-- 263 (361)
T cd04747 219 --SQWKQ---QDY-------TAR----LADTPDELEALLAPLVDAGVDIFHCSTRRF-----------------WEPE-- 263 (361)
T ss_pred --Ccccc---ccc-------ccC----CCCCHHHHHHHHHHHHHcCCCEEEecCCCc-----------------cCCC--
Confidence 21100 000 000 013356777777778888888754432210 0000
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCC------------------CCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGI------------------SKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGI------------------st~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..|. + ..+.+.+|+.+++||++-+|| ++++++.++++.| +|.|-+|-+++.
T Consensus 264 ~~~~----~---~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 264 FEGS----E---LNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred cCcc----c---hhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 0111 1 245677888889999999998 5899999999876 999999988765
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.033 Score=53.05 Aligned_cols=180 Identities=17% Similarity=0.207 Sum_probs=106.8
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH-cC-CCHHHHHHHHHHhhccCCCcEEEE---ecCcchhccC
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA-RG-TNFNAILSMLKEVVPQMSCPIALF---TYYNPILKRG 155 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~-~G-~~~~~~~~~i~~ir~~~~iPiilm---~Y~n~i~~~g 155 (311)
=-++.++++|.+.|-.+ |--+..+ ..+. .| .++++.++.+++|...+++||++. ||-|+. .
T Consensus 26 lSAri~e~aGf~ai~~s---------s~~va~s--lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~---~ 91 (290)
T TIGR02321 26 LVAKLAEQAGFGGIWGS---------GFELSAS--YAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAV---N 91 (290)
T ss_pred HHHHHHHHcCCCEEEEC---------HHHHHHH--CCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---H
Confidence 34566788899999885 3222211 1111 11 588899999999999999999998 587765 2
Q ss_pred HHHHHHHHHHcCCcEEEecCC-----------------ChhhHHHHHHHHH--HcCCCeEEEe------CCCCh---HHH
Q 021527 156 VDNFMSTVRDIGIRGLVVPDV-----------------PLEETESLQKEAM--KNKIELVLFT------TPTTP---TDR 207 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDl-----------------p~ee~~~~~~~~~--~~gi~~I~li------sp~t~---~er 207 (311)
+.+.++.+.++|+.|+.+=|- +.||..+-.+.++ +.+.+.++.. ..... .+|
T Consensus 92 v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~R 171 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRR 171 (290)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHH
Confidence 577899999999999999662 2334222222222 2344444322 11111 256
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC--CcEEEeeCCCCHH-HHHHHHHcC-CcEEEEhhHhh
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST--KPVAVGFGISKPE-HVQQVAGWG-ADGVIVGSAMV 283 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~vGfGIst~e-~v~~v~~~G-ADGvIVGSaiv 283 (311)
.+.+.+..-..+|+.+. . + + .+.++++.+..+ +|+++--|- +|. .+.++.++| ..-|+.|+.+.
T Consensus 172 a~aY~eAGAD~ifv~~~--~---~---~---~~ei~~~~~~~~~p~pv~~~~~~-~p~~~~~~l~~lg~~~~v~~g~~~~ 239 (290)
T TIGR02321 172 GQAYEEAGADAILIHSR--Q---K---T---PDEILAFVKSWPGKVPLVLVPTA-YPQLTEADIAALSKVGIVIYGNHAI 239 (290)
T ss_pred HHHHHHcCCCEEEecCC--C---C---C---HHHHHHHHHhcCCCCCeEEecCC-CCCCCHHHHHHhcCCcEEEEChHHH
Confidence 66676655556665321 0 0 1 245666666554 577542231 222 244566676 67799998877
Q ss_pred chh
Q 021527 284 KLL 286 (311)
Q Consensus 284 ~~~ 286 (311)
+..
T Consensus 240 ~aa 242 (290)
T TIGR02321 240 RAA 242 (290)
T ss_pred HHH
Confidence 743
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.051 Score=51.01 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=76.8
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR----GTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~----G~~~~~~~ 128 (311)
.|.+++++|++. ..+++=| .-.++.++++|+|+|-+| |.+ | ...+.. .+++++.+
T Consensus 6 ~~~~~~~~g~~i--~m~tayD------~~sA~i~~~aG~d~ilvG----dSl--g-------m~~lG~~~t~~vtldem~ 64 (263)
T TIGR00222 6 SLLQKKKQEEKI--VAITAYD------YSFAKLFADAGVDVILVG----DSL--G-------MVVLGHDSTLPVTVADMI 64 (263)
T ss_pred HHHHHHhCCCcE--EEEeccC------HHHHHHHHHcCCCEEEEC----ccH--h-------HHhcCCCCCCCcCHHHHH
Confidence 355666666653 3444333 246778899999999998 211 1 112222 37899999
Q ss_pred HHHHHhhccCCCcEEE-----EecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE
Q 021527 129 SMLKEVVPQMSCPIAL-----FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 129 ~~i~~ir~~~~iPiil-----m~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I 196 (311)
..++.+++-.+-|+++ ++|-+ ...++++-.+.++++|+++|-+=|- ++..+..+.+.+.|+.++
T Consensus 65 ~h~~aV~rg~~~~~vv~DmPf~sy~~--~e~a~~na~rl~~eaGa~aVkiEgg--~~~~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 65 YHTAAVKRGAPNCLIVTDLPFMSYAT--PEQALKNAARVMQETGANAVKLEGG--EWLVETVQMLTERGVPVV 133 (263)
T ss_pred HHHHHHHhhCCCceEEeCCCcCCCCC--HHHHHHHHHHHHHHhCCeEEEEcCc--HhHHHHHHHHHHCCCCEE
Confidence 9999998876666555 24432 1122333444566799999988775 455566788889999877
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.066 Score=55.92 Aligned_cols=226 Identities=15% Similarity=0.203 Sum_probs=136.9
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
|.+..+.|+....=+..|-..+.+.+.+.++.|.+.++|.+-+- |||- |.+-..-+.+...
T Consensus 315 ~~~~l~~g~~vs~E~~PPk~~~~~~l~~~~~~L~~~~~d~i~Vt--------d~~~-----------g~~r~~s~~~a~~ 375 (612)
T PRK08645 315 LLDKLKKGKTVIVELDPPKGLDTDKFLEGAKALKEAGVDAITLA--------DNPL-----------ARVRISNIALASL 375 (612)
T ss_pred HHHHHhCCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEcC--------CCCC-----------cccccCHHHHHHH
Confidence 33333455552333667777778999999999999999999983 2211 1111123457777
Q ss_pred hhccCCCcEEEE-ecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChh------------hHHHHHHHHHHc--CC---
Q 021527 134 VVPQMSCPIALF-TYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLE------------ETESLQKEAMKN--KI--- 193 (311)
Q Consensus 134 ir~~~~iPiilm-~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~e------------e~~~~~~~~~~~--gi--- 193 (311)
++++..+|.+.- +.. ...+..++..+..+...|++.|++ .|-|.. .+.++.+.+++. |.
T Consensus 376 l~~~~gi~~i~Hltc~-d~n~~~l~~~L~~~~~~Gv~nILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~~~~g~~~~ 454 (612)
T PRK08645 376 IKRELGIEPLVHITCR-DRNLIGLQSHLLGLHALGIRNVLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQLNEGISYS 454 (612)
T ss_pred HHHHhCCCeeeEecCC-CcCHHHHHHHHHHHHHcCCceEEEccCCCCCCCCCCCCCCCccccHHHHHHHHHHHhCCCCcC
Confidence 777767776543 211 111223466777788999999877 465421 145667766663 21
Q ss_pred ----------CeEEEeCCCCh--HHHHHHHH-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhcCCCcEEEeeC-
Q 021527 194 ----------ELVLFTTPTTP--TDRMKAIV-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKESSTKPVAVGFG- 258 (311)
Q Consensus 194 ----------~~I~lisp~t~--~eri~~i~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~~~~Pv~vGfG- 258 (311)
..-.-..|... +..++.+. +...|..|+++-. -.+ ..+.+++++++. .++||+.|.-
T Consensus 455 g~~~~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~-------~fd~~~~~~~~~~~~~-~~vpIi~GImP 526 (612)
T PRK08645 455 GKPLGKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQP-------VYDEELIEELLEATKH-LGVPIFIGIMP 526 (612)
T ss_pred CCccCCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecc-------cCCHHHHHHHHHHHhc-CCCCEEEEeee
Confidence 11112234432 22222222 2345666665422 123 346677777774 5799999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCc----hhHHHHHHHHHHHHHh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~----~~~~~~~~~~~~~l~~ 308 (311)
+.|..+++.+.+. .-|+-|=..+.+.++...++ +.+++...+++++++.
T Consensus 527 i~s~k~~~~~~~~-~~Gv~vP~~l~~~l~~~~d~~~~~~~gv~~a~e~i~~l~~ 579 (612)
T PRK08645 527 LVSYRNAEFLHNE-VPGITLPEEIRERMRAVEDKEEAREEGVAIARELIDAARE 579 (612)
T ss_pred cCCHHHHHHHHhC-CCCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 8999999888764 56999999999999754322 2456667777777764
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0023 Score=56.54 Aligned_cols=103 Identities=21% Similarity=0.338 Sum_probs=67.3
Q ss_pred HHHHHHHcC-CcEEEecCCChhhHHHHHHHHHHcCCCeEE--EeCCCChHHH-HHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 159 FMSTVRDIG-IRGLVVPDVPLEETESLQKEAMKNKIELVL--FTTPTTPTDR-MKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 159 fi~~~~~aG-adGviipDlp~ee~~~~~~~~~~~gi~~I~--lisp~t~~er-i~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
-++.+++.+ +||+|-.- ..+.+.+++.|+..|+ |+-.+..-++ ++.+.+....++=+.+ |
T Consensus 63 ~i~~L~~~~~~dGIISTk------~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEilP--g-------- 126 (175)
T PF04309_consen 63 GIEYLKEYGKPDGIISTK------SNLIKRAKKLGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEILP--G-------- 126 (175)
T ss_dssp HHHHHHHTT--SEEEESS------HHHHHHHHHTT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEES--C--------
T ss_pred HHHHHHHcCCCcEEEeCC------HHHHHHHHHcCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEch--H--------
Confidence 455566666 99986652 2467788999997663 3343444454 5555555667765543 1
Q ss_pred CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
-+.+.++++++.++.|+++|+=|++.|++.+++++||+||-..
T Consensus 127 --~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS 169 (175)
T PF04309_consen 127 --VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTS 169 (175)
T ss_dssp --CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE-
T ss_pred --HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcC
Confidence 1336788899999999999999999999999999999999543
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.042 Score=52.11 Aligned_cols=179 Identities=15% Similarity=0.110 Sum_probs=107.3
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEec
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTY 147 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y 147 (311)
--|..|.+.+.+.++.+.+.|+|.|-++--.. ++ .-.+.++-.++++.+.+. -++||+.-+-
T Consensus 14 ~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstG----E~------------~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~ 77 (294)
T TIGR02313 14 RNGDIDEEALRELIEFQIEGGSHAISVGGTSG----EP------------GSLTLEERKQAIENAIDQIAGRIPFAPGTG 77 (294)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccCc----cc------------ccCCHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 34677889999999999999999998851111 11 124566666777766543 3589887654
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecC---CC--hhhHHH-HHHHHHHc-CCCeEEEeCCC-----ChHHHHHHHHHhC
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPD---VP--LEETES-LQKEAMKN-KIELVLFTTPT-----TPTDRMKAIVEAS 215 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipD---lp--~ee~~~-~~~~~~~~-gi~~I~lisp~-----t~~eri~~i~~~a 215 (311)
.|... ..-+..+.+.+.|+|++++.- .+ .++..+ |...+... ++.++++=.|. .+.+.+.++++.-
T Consensus 78 ~~~t~--~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~ 155 (294)
T TIGR02313 78 ALNHD--ETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDC 155 (294)
T ss_pred cchHH--HHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhC
Confidence 44221 113456678899999998831 11 244444 45556666 78766653332 2357777776544
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..++++=.. +| ++ ..+.++.... +..|+.|.. +..-..+..|+||.|.|.+
T Consensus 156 pnv~giK~s---s~-------d~-~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~Ga~G~is~~~ 208 (294)
T TIGR02313 156 PNIVGAKES---NK-------DF-EHLNHLFLEAGRDFLLFCGIE----LLCLPMLAIGAAGSIAATA 208 (294)
T ss_pred CCEEEEEeC---CC-------CH-HHHHHHHHhcCCCeEEEEcch----HHHHHHHHCCCCEEEecHH
Confidence 566655221 11 11 2344443332 344544432 4555666799999999863
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0032 Score=56.72 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+.+..+.+.+..-..+.+++..+..+. ..+.++.+|+.+++||+++.+|.++++++.+.+.|||||++|+...
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g-------~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQG-------SLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCC-------CHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 445555554433344555655544332 1256888888889999999999999999999999999999998765
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
.
T Consensus 106 ~ 106 (217)
T cd00331 106 D 106 (217)
T ss_pred C
Confidence 4
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK00042 tpiA triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0021 Score=59.90 Aligned_cols=122 Identities=22% Similarity=0.334 Sum_probs=72.3
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHHHHHHH----HHHcCCCeEEEeCCCChHHHH------------HHHHH-----
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETESLQKE----AMKNKIELVLFTTPTTPTDRM------------KAIVE----- 213 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~~~~~~----~~~~gi~~I~lisp~t~~eri------------~~i~~----- 213 (311)
-.+.++++|++.+++.. ..+.|..+.... +.++|+.+|+-+.- +.++|- +....
T Consensus 78 S~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGE-t~~~r~~g~~~~v~~~Ql~~~l~~~~~~ 156 (250)
T PRK00042 78 SAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGE-TLEEREAGKTEEVVARQLEAALAGLSAE 156 (250)
T ss_pred CHHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCChHHHHHHHHHHHHccCCHH
Confidence 55678999999999963 223355555555 88899988876653 333332 11111
Q ss_pred -hCCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHH-HHcCCcEEEEhh
Q 021527 214 -ASEGFVYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQV-AGWGADGVIVGS 280 (311)
Q Consensus 214 -~a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v-~~~GADGvIVGS 280 (311)
...-.|-|.+ ..| ||... .+....+..+.+|+. .+++|++|++|+ ++++.++ ...+.||+-||+
T Consensus 157 ~~~~~vIAYEPvWAIG-tG~~a-s~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~-~~N~~~l~~~~~vDG~LVG~ 233 (250)
T PRK00042 157 QFANLVIAYEPVWAIG-TGKTA-TPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVK-PDNAAELMAQPDIDGALVGG 233 (250)
T ss_pred HhCCEEEEECCHHHhC-CCCCC-CHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCC-HHHHHHHhcCCCCCEEEEee
Confidence 1122333322 233 55432 233344444444432 147999999998 4666554 567799999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+-.+
T Consensus 234 Asl~ 237 (250)
T PRK00042 234 ASLK 237 (250)
T ss_pred eeec
Confidence 9885
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.035 Score=52.63 Aligned_cols=179 Identities=10% Similarity=0.065 Sum_probs=104.6
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.|-++--.. +++ -.+.++-.++++.+.+. -++||+.-+-.+
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstG----E~~------------~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~ 84 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTG----EFF------------SLTPAEYEQVVEIAVSTAKGKVPVYTGVGGN 84 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCc----Ccc------------cCCHHHHHHHHHHHHHHhCCCCcEEEecCcc
Confidence 556678999999999999999999851111 111 13555556666665543 358888765322
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--CC---ChhhHHH-HHHHHHHcCCCeEEEeCC--CChHHHHHHHHHhCCceEEE
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--DV---PLEETES-LQKEAMKNKIELVLFTTP--TTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--Dl---p~ee~~~-~~~~~~~~gi~~I~lisp--~t~~eri~~i~~~a~gfiY~ 221 (311)
. ...-+..+.+.++|+|++++. -. ..++..+ |...+...++.++++=.+ ..+.+-+.++++.-..++.+
T Consensus 85 -t--~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgi 161 (296)
T TIGR03249 85 -T--SDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGF 161 (296)
T ss_pred -H--HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEE
Confidence 1 122356677899999998872 11 1244455 455556667776655322 23456666665534455543
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
=.. +| ++ +.+.++++.. +..|+.|++... +.+-..+.+|++|+|.|.+
T Consensus 162 Kds---~~-------d~-~~~~~~~~~~~~~~~v~~G~~~~d-~~~~~~~~~Ga~G~is~~~ 211 (296)
T TIGR03249 162 KDG---IG-------DM-EQMIEITQRLGDRLGYLGGMPTAE-VTAPAYLPLGVTSYSSAIF 211 (296)
T ss_pred EeC---CC-------CH-HHHHHHHHHcCCCeEEEeCCCcch-hhHHHHHhCCCCEEEecHH
Confidence 111 11 12 2334443332 466777776542 4455566789999998766
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.021 Score=55.47 Aligned_cols=157 Identities=22% Similarity=0.293 Sum_probs=102.5
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCC------CHHHHHHHHH
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGT------NFNAILSMLK 132 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~------~~~~~~~~i~ 132 (311)
+...||.=+-.-|| +.+.+.++..+..+ |.|-| |=|- . .|-+.|+ +.+-+=++|+
T Consensus 72 ~D~PLIvQf~~ndp--~~ll~Aa~lv~~y~-D~idlNcGCPq-----------~---~a~~g~yGa~L~~~~eLv~e~V~ 134 (358)
T KOG2335|consen 72 EDRPLIVQFGGNDP--ENLLKAARLVQPYC-DGIDLNCGCPQ-----------K---VAKRGGYGAFLMDNPELVGEMVS 134 (358)
T ss_pred CCCceEEEEcCCCH--HHHHHHHHHhhhhc-CcccccCCCCH-----------H---HHhcCCccceeccCHHHHHHHHH
Confidence 34567777766666 78888888888876 88877 4332 1 1222332 5666678899
Q ss_pred HhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
.++.++++||-+-.- |.+|+ ++..+|...+.+.|...+. +.-.|.+++
T Consensus 135 ~v~~~l~~pVs~KIR------------------------I~~d~--~kTvd~ak~~e~aG~~~lt-VHGRtr~~k----- 182 (358)
T KOG2335|consen 135 AVRANLNVPVSVKIR------------------------IFVDL--EKTVDYAKMLEDAGVSLLT-VHGRTREQK----- 182 (358)
T ss_pred HHHhhcCCCeEEEEE------------------------ecCcH--HHHHHHHHHHHhCCCcEEE-EecccHHhc-----
Confidence 999999999655321 33443 4455555556666655333 232332222
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhc
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVK 284 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~ 284 (311)
| .+ .++-..+.++.||+... +||++.++|.+.+++..+++ .|||||-+|=++..
T Consensus 183 -------------g---~~--~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 183 -------------G---LK--TGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred -------------C---CC--CCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 1 11 11122467999999875 99999999999999999998 99999999965544
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0044 Score=56.70 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCcEEEec-CC----C------hhhHHHHHHHHHHcCCCeEEEeCCCChH-------HHHHHHHHh--CCc
Q 021527 158 NFMSTVRDIGIRGLVVP-DV----P------LEETESLQKEAMKNKIELVLFTTPTTPT-------DRMKAIVEA--SEG 217 (311)
Q Consensus 158 ~fi~~~~~aGadGviip-Dl----p------~ee~~~~~~~~~~~gi~~I~lisp~t~~-------eri~~i~~~--a~g 217 (311)
.-++.+.+.|+|+|-+. ++ + .++..++.+.|+++|+++|+-..++..+ +.+...++. ..|
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~G 159 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELG 159 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhC
Confidence 45678999999987662 11 1 1456778899999999887764443322 123333332 356
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc----EEEeeCC------CCHHHHHHHHHcCC--cEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKP----VAVGFGI------SKPEHVQQVAGWGA--DGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P----v~vGfGI------st~e~v~~v~~~GA--DGvIVGSaiv~ 284 (311)
..|+=+.+| +. .+......+.++++-+.++.| |.+.+|| ++.+++.++++.|| -|+..|=.+.+
T Consensus 160 aD~vKt~tg--~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 160 ADFVKTSTG--KP-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp -SEEEEE-S--SS-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred CCEEEecCC--cc-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence 666644333 12 222223334566655556789 9999999 99999999999999 89988876654
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.012 Score=58.44 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+|++.+.+..-.+|.+-+..| .+..+.++++++|+.. ++++ +..+|.|+++++.+.++|||+|.||
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g-------~~~~~~~~v~~ik~~~p~~~v-i~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHG-------HSTRIIELVKKIKTKYPNLDL-IAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCC-------CChhHHHHHHHHHhhCCCCcE-EEEecCCHHHHHHHHHcCCCEEEEC
Confidence 677777665445554433222 2345678899999976 6776 5567778999999999999999998
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.084 Score=49.62 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cCCCcEEEEecC-----c
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QMSCPIALFTYY-----N 149 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~~iPiilm~Y~-----n 149 (311)
++...+.+..+.+ |+|.+-+- -| +++.... ..++|+++-... +
T Consensus 41 l~~~~~~~~~i~~-~~da~~~~--------~G----------------------~~~~~~~~~~~~~lil~ls~~t~~~~ 89 (264)
T PRK08227 41 LERIDINIAPLFP-YADVLMCT--------RG----------------------ILRSVVPPATNKPVVLRASGGNSILK 89 (264)
T ss_pred ccChHHHHHHHhh-cCCEEEeC--------hh----------------------HHHhcccccCCCcEEEEEcCCCCCCC
Confidence 3445566777777 79999884 12 3333322 246787776321 1
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec---CCCh-----hhHHHHHHHHHHcCCCeEEEeCCCCh-----HHHHHHHHH---
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP---DVPL-----EETESLQKEAMKNKIELVLFTTPTTP-----TDRMKAIVE--- 213 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip---Dlp~-----ee~~~~~~~~~~~gi~~I~lisp~t~-----~eri~~i~~--- 213 (311)
+....-.---++++.+.|+|+|-+. .-.. ++..++.++|.++|+.++. +.|.-+ .+.+.-.++
T Consensus 90 ~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaa 168 (264)
T PRK08227 90 ELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAA 168 (264)
T ss_pred CCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHH
Confidence 1111111124678999999998873 2112 2356677899999998776 444332 122221111
Q ss_pred -hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCH-----HHHHHHHHcCCcEEEEhhHhhch
Q 021527 214 -ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP-----EHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 214 -~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~-----e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+...+|= + ..|| +.++++-+.+.+||++-+|=++. +.+....+.||-|+.+|=-+...
T Consensus 169 ELGADiVK-~---~y~~----------~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 169 EMGAQIIK-T---YYVE----------EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred HHcCCEEe-c---CCCH----------HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 2223321 1 1221 34666666778999998887742 24566778999999999777664
|
|
| >PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.047 Score=51.51 Aligned_cols=226 Identities=16% Similarity=0.236 Sum_probs=125.5
Q ss_pred HHHHHcCCccEEE-EEeCCCCCh-hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 55 TRLKKQGKVALIP-YITAGDPDL-STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 55 ~~~~~~~~~~li~-yi~~G~P~~-~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
++.-++++..+.. ++.|-..+. +.+.+.++.|.+.++|.|-+- |+| .|.+.........
T Consensus 3 ~~~l~~~~~~~s~E~~PPk~~~~~~~l~~~~~~l~~~~pd~vsVT--------d~~-----------~~~~~~~s~~~a~ 63 (287)
T PF02219_consen 3 QQKLKKGEFVVSFELFPPKGADGEEKLLEAAERLKDLGPDFVSVT--------DNP-----------GGSSRMMSLLAAA 63 (287)
T ss_dssp HHHHHTSS-EEEEEE---SSHHHHHHHHHHHHHHHTT--SEEEE-----------G-----------CGTTHHHHHHHHH
T ss_pred hHHHhCCCCEEEEEEeCCCCchHHHHHHHHHHHhcCCCCCEEEee--------cCC-----------CCcccCCcHHHHH
Confidence 3333455655555 334444443 357788999999999999884 221 1122233445667
Q ss_pred HhhccCCCcEEEE-ecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChh------------hHHHHHHHHHH-cC--CC
Q 021527 133 EVVPQMSCPIALF-TYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLE------------ETESLQKEAMK-NK--IE 194 (311)
Q Consensus 133 ~ir~~~~iPiilm-~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~e------------e~~~~~~~~~~-~g--i~ 194 (311)
.++++.+++.+.- +..+ .-+..++..+..+.+.|++.|++ .|.|.. .+.++.+.+++ .+ +.
T Consensus 64 ~l~~~~g~~~i~Hlt~rd-~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~ 142 (287)
T PF02219_consen 64 KLLKETGIEPIPHLTCRD-RNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFS 142 (287)
T ss_dssp HHHHHTT--EEEEEESTT-SBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSE
T ss_pred HHHHHhCCceEEeecccC-CCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccc
Confidence 7776666665543 3322 23446678888999999999988 354421 14556666663 22 12
Q ss_pred eEEEeC----CCCh--HHHHHHH-HHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEee-CCCCHHHH
Q 021527 195 LVLFTT----PTTP--TDRMKAI-VEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGF-GISKPEHV 265 (311)
Q Consensus 195 ~I~lis----p~t~--~eri~~i-~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGf-GIst~e~v 265 (311)
.-.-.. |..+ +..++.+ .+...|..|++|-... ....+.++++++|+. .++||++|. .+.+..++
T Consensus 143 i~va~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~f------d~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~ 216 (287)
T PF02219_consen 143 IGVAGYPEGHPEAPDFEAELKRLKKKIDAGADFIITQPFF------DAEAFERFLDRLREAGIDVPIIPGIMPLTSAKSA 216 (287)
T ss_dssp EEEEE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEEEE-S------SHHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHH
T ss_pred cccccCCCCCccccCHHHHHHHHHHHHHCCCCEEeccccC------CHHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHH
Confidence 111222 3332 2223222 2234565566542211 124477888889886 478999984 67889999
Q ss_pred HHHHHcCCcEEEEhhHhhchhhhcCCc-----hhHHHHHHHHHHHHHh
Q 021527 266 QQVAGWGADGVIVGSAMVKLLGEAQSP-----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 266 ~~v~~~GADGvIVGSaiv~~~~~~~~~-----~~~~~~~~~~~~~l~~ 308 (311)
..+.++ + ||.|=..+++.+++..+. +.+++...++++++++
T Consensus 217 ~~~~~~-~-Gv~iP~~~~~~l~~~~~~~~~~~~~gi~~a~e~~~~l~~ 262 (287)
T PF02219_consen 217 RFLAKL-C-GVDIPDELIERLEEAKDDPEAVREIGIEIAVELIRELLA 262 (287)
T ss_dssp HHHHHH-H-T-EEEHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-c-CccCCHHHHHHHHHhcCCHHHHHHHhHHHHHHHHHHHHH
Confidence 999888 6 999999999999854322 1245566677777654
|
7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B .... |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.078 Score=51.23 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=75.5
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~~ 128 (311)
.|.+++++|++. ..+|+=| .-.++.++++|+|+|-+| |.+ | ...+. ..+++++.+
T Consensus 26 ~l~~~k~~g~ki--vmlTAyD------~~sA~i~d~aGvD~ILVG----DSl--g-------mv~lG~~~T~~Vtld~mi 84 (332)
T PLN02424 26 TLRQKYRRGEPI--TMVTAYD------YPSAVHVDSAGIDVCLVG----DSA--A-------MVVHGHDTTLPITLDEML 84 (332)
T ss_pred HHHHHHhCCCcE--EEEecCC------HHHHHHHHHcCCCEEEEC----CcH--H-------HHhcCCCCCCCcCHHHHH
Confidence 466777776653 3444433 356788899999999998 110 1 11121 236899999
Q ss_pred HHHHHhhccCCCcEEEE----e-cCcchhccCHHHH---HHH-HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE
Q 021527 129 SMLKEVVPQMSCPIALF----T-YYNPILKRGVDNF---MST-VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm----~-Y~n~i~~~g~~~f---i~~-~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I 196 (311)
..++.|++..+.|+++- + |- .+.++. +.+ ++++|+++|=+=|-. .+..+..+.+.+.||.++
T Consensus 85 ~H~~aV~Rga~~a~vVaDmPfgSY~-----~s~e~av~nA~rl~~eaGa~aVKlEGg~-~~~~~~I~~l~~~GIPV~ 155 (332)
T PLN02424 85 VHCRAVARGANRPLLVGDLPFGSYE-----SSTDQAVESAVRMLKEGGMDAVKLEGGS-PSRVTAAKAIVEAGIAVM 155 (332)
T ss_pred HHHHHHhccCCCCEEEeCCCCCCCC-----CCHHHHHHHHHHHHHHhCCcEEEECCCc-HHHHHHHHHHHHcCCCEE
Confidence 99999998888998872 2 32 234443 333 478999999886653 233445555668899876
|
|
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.27 Score=48.08 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCC----------ChHHHHHHHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLA----------DGPVIQAAATRS 117 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~a----------DGp~Iq~a~~~A 117 (311)
.++.+.++..++++ -++..|= -.+++.+.-++++.++....+|--..|..-.+. ||..+..
T Consensus 13 ~~~~~lL~~A~~~~-yAVgAfN---v~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~----- 83 (357)
T TIGR01520 13 DDVHKLFQYAKENN-FAIPAIN---CTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILG----- 83 (357)
T ss_pred HHHHHHHHHHHHCC-ceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhh-----
Confidence 57888888876654 4555555 347888899999999999998765433221111 2211211
Q ss_pred HHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH-H--HHHHHHHHcC-----------CcEEEe--cCCChhh-
Q 021527 118 LARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV-D--NFMSTVRDIG-----------IRGLVV--PDVPLEE- 180 (311)
Q Consensus 118 l~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~-~--~fi~~~~~aG-----------adGvii--pDlp~ee- 180 (311)
...+..+++.+.++.++||.+.. + -|. . ++++.|.++| .+.|.+ ..+|+||
T Consensus 84 ------~~~~~~~v~~~Ae~a~VPValHL--D----Hg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeEN 151 (357)
T TIGR01520 84 ------AIAGAHHVHSIAEHYGVPVVLHT--D----HCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEEN 151 (357)
T ss_pred ------HHHHHHHHHHHHHHCCCCEEEEC--C----CCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHH
Confidence 11245677888888899999853 1 121 1 6788888886 888887 5789987
Q ss_pred ---HHHHHHHHHHcCCCeEE---Ee---------------CCCChHHHHHHHHHhC---CceEEE----EecCCccC-CC
Q 021527 181 ---TESLQKEAMKNKIELVL---FT---------------TPTTPTDRMKAIVEAS---EGFVYL----VSSIGVTG-AR 231 (311)
Q Consensus 181 ---~~~~~~~~~~~gi~~I~---li---------------sp~t~~eri~~i~~~a---~gfiY~----vs~~G~TG-~~ 231 (311)
..++.+.++..|+.+=- -+ ..-|.++..++..+.. .|...+ .+..|.+- ..
T Consensus 152 I~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~ 231 (357)
T TIGR01520 152 IEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGN 231 (357)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCC
Confidence 56788888888873210 00 0124445555665533 254443 34555541 22
Q ss_pred CCCCchHHHHHHHH----hhcCCCc------EEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 232 ASISGHVQTLLREI----KESSTKP------VAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 232 ~~~~~~~~~~l~~v----k~~~~~P------v~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
..++. +.|+++ ++.+++| ++. |.|+. .|+++++.+.|.-=|=|+|.+....
T Consensus 232 p~Ld~---d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~-~e~i~kai~~GI~KINi~Tdl~~A~ 294 (357)
T TIGR01520 232 VKLTP---DILADGQEYVSEKLGLPAAKPLFFVFHGGSGST-KQEIKEALSYGVVKMNIDTDTQWAY 294 (357)
T ss_pred CccCH---HHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCC-HHHHHHHHHCCCeEEEeCcHHHHHH
Confidence 23443 456666 4566777 655 66775 6999999999999999999886644
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.08 Score=50.38 Aligned_cols=179 Identities=11% Similarity=0.129 Sum_probs=104.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.|-++--.. ++ .-.+.++-.++++.+++. -++|++.-+-.|
T Consensus 23 g~iD~~~l~~li~~l~~~Gv~Gi~~~GstG----E~------------~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~ 86 (303)
T PRK03620 23 GSFDEAAYREHLEWLAPYGAAALFAAGGTG----EF------------FSLTPDEYSQVVRAAVETTAGRVPVIAGAGGG 86 (303)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCc----Cc------------ccCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 556678999999999999999998851111 11 124556666777776654 358987754322
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--CC---ChhhHHH-HHHHHHHcCCCeEEEeCCC--ChHHHHHHHHHhCCceEEE
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--DV---PLEETES-LQKEAMKNKIELVLFTTPT--TPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--Dl---p~ee~~~-~~~~~~~~gi~~I~lisp~--t~~eri~~i~~~a~gfiY~ 221 (311)
. ...-+.++.+.++|+|++++. -. ..++..+ |...+...++.++++=.|. .+.+-+.++++.-..++++
T Consensus 87 t---~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~gi 163 (303)
T PRK03620 87 T---AQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGF 163 (303)
T ss_pred H---HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEE
Confidence 1 123457778899999998883 11 1244444 4555666678766553332 2456677776344455544
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
=.. +| +. ..+.++++.. +.-|+.|+.- .-..+-....+|++|.|.|.+
T Consensus 164 K~s---~~-------d~-~~~~~~~~~~~~~f~vl~G~d~-~e~~~~~~~~~G~~G~is~~a 213 (303)
T PRK03620 164 KDG---VG-------DI-ELMQRIVRALGDRLLYLGGLPT-AEVFAAAYLALGVPTYSSAVF 213 (303)
T ss_pred EeC---CC-------CH-HHHHHHHHHcCCCeEEEeCCCc-chhhHHHHHhCCCCEEEecHH
Confidence 211 11 11 2344443333 4456655531 123344556789999998764
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.054 Score=50.75 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=105.3
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEEEecC
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIALFTYY 148 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiilm~Y~ 148 (311)
-|.=|.+.+.+.++.|.+.|+|.+-+.--. | ...-.|.++..++++.+++.. ++||+.-.-.
T Consensus 15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~Gst------G----------E~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~ 78 (284)
T cd00950 15 DGSVDFDALERLIEFQIENGTDGLVVCGTT------G----------ESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS 78 (284)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCC------c----------chhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC
Confidence 345556889999999999999999885111 1 112256666677777766553 5787775543
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec--CC---ChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHHhCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP--DV---PLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVEASEG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip--Dl---p~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~~a~g 217 (311)
+... ..-+.++.+.++|+|++++. .. ..++..+ |+..+...++.++++=.|. .+.+-++++++. ..
T Consensus 79 ~~~~--~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~-p~ 155 (284)
T cd00950 79 NNTA--EAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEH-PN 155 (284)
T ss_pred ccHH--HHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcC-CC
Confidence 3221 12457778899999999883 21 2245555 4555566688877664443 234666666653 34
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+=- .++ +. ..+.+++... +..++.|.. +.+......|++|.+.|.+
T Consensus 156 v~giK~---s~~-------~~-~~~~~~~~~~~~~~~v~~G~d----~~~~~~~~~G~~G~~s~~~ 206 (284)
T cd00950 156 IVGIKE---ATG-------DL-DRVSELIALCPDDFAVLSGDD----ALTLPFLALGGVGVISVAA 206 (284)
T ss_pred EEEEEE---CCC-------CH-HHHHHHHHhCCCCeEEEeCCh----HhHHHHHHCCCCEEEehHH
Confidence 443311 011 11 2344444433 344555532 4556667899999998865
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.042 Score=51.72 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=100.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.|-++--.. +++. .+.++-.++++.+.+. -++||+.-.-.|
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG----E~~~------------ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTG----EGQL------------MSWDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCc----chhh------------CCHHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 556678999999999999999999852211 1211 4555556666665543 358888765433
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHHHHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCceE
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETESLQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gfi 219 (311)
... ..-+..+.+.++|+|++++. . ...++..++.+.+.+.. ..+++=.| ..+.+-++++++ -..++
T Consensus 81 ~t~--~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~P~~tg~~l~~~~l~~l~~-~pni~ 156 (280)
T PLN02417 81 STR--EAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG-PTIIYNVPGRTGQDIPPEVIFKIAQ-HPNFA 156 (280)
T ss_pred cHH--HHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC-CEEEEEChhHhCcCCCHHHHHHHhc-CCCEE
Confidence 221 12346667889999999883 1 22356666666665556 55444333 223566666654 24455
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHH-HHcCCcEEEEhhHhh
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQV-AGWGADGVIVGSAMV 283 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v-~~~GADGvIVGSaiv 283 (311)
.+=. .+| + ..+.+.+. .++.|+.|.. +.+-.. +..|+||+|.|.+-+
T Consensus 157 giKd---ss~-----~----~~~~~~~~-~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~~n~ 204 (280)
T PLN02417 157 GVKE---CTG-----N----DRVKQYTE-KGILLWSGND----DECHDARWDYGADGVISVTSNL 204 (280)
T ss_pred EEEe---CCC-----c----HHHHHHhc-CCeEEEEccc----HHhhHHHHhCCCCEEEecHHHh
Confidence 4421 111 1 12232222 2456666654 233333 668999999986643
|
|
| >cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.04 Score=49.92 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=65.0
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
..++.+...++++.+.+. ++++++|.|+ +. ..| .+.++++++.. .||++..-.+++
T Consensus 6 D~~~~~~a~~i~~~~~~~-v~~iKvg~~l---------~~-------~~g------~~~i~~l~~~~-~~i~~DlK~~DI 61 (216)
T cd04725 6 DPPDEEFALALIDALGPY-VCAVKVGLEL---------FE-------AAG------PEIVKELRELG-FLVFLDLKLGDI 61 (216)
T ss_pred CCCCHHHHHHHHHhcCCc-ccEEEECHHH---------HH-------hcC------HHHHHHHHHCC-CcEEEEeecCch
Confidence 445568888999887765 8999999776 11 122 35777777654 788887765544
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeE
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELV 196 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I 196 (311)
-.+ ....++.+.+.|+|.+.+.-+.-.+ ...+.+..++++-..+
T Consensus 62 g~t-v~~~~~~~~~~gad~~Tvh~~~G~~~l~~~~~~~~~~~~~~~ 106 (216)
T cd04725 62 PNT-VAAAAEALLGLGADAVTVHPYGGSDMLKAALEAAEEKGKGLF 106 (216)
T ss_pred HHH-HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHHhccCCeEE
Confidence 321 1235556778899999998655333 4556666666664433
|
In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP. |
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.022 Score=53.98 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-C---CCcEEEEecCcch
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-M---SCPIALFTYYNPI 151 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~---~iPiilm~Y~n~i 151 (311)
.++-+++++.|.+.|+|.||+|+|-.. |. -++.++++.+. . ++.+..++
T Consensus 22 ~~~Ki~ia~~L~~~Gv~~IE~gfP~~~---~~-------------------e~e~~~~i~~~~~~~~~~~~~al~----- 74 (284)
T cd07942 22 VEQKLRFFKLLVKIGFKEIEVGFPSAS---QT-------------------DFDFVRELIEEDLIPDDVTIQVLT----- 74 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCC---HH-------------------HHHHHHHHHHccCCCCCCEEEEEc-----
Confidence 467789999999999999999986632 21 12355555322 1 23333322
Q ss_pred hccCHHHHHHHHHHc--CCc--EEEe--c--C--------CChhh----HHHHHHHHHHcCCCe-----EEEeCC----C
Q 021527 152 LKRGVDNFMSTVRDI--GIR--GLVV--P--D--------VPLEE----TESLQKEAMKNKIEL-----VLFTTP----T 202 (311)
Q Consensus 152 ~~~g~~~fi~~~~~a--Gad--Gvii--p--D--------lp~ee----~~~~~~~~~~~gi~~-----I~lisp----~ 202 (311)
......++.+.++ |++ .+.+ + | ...+| ..+..+.++++|++. -+-..+ .
T Consensus 75 --r~~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr 152 (284)
T cd07942 75 --QAREDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSD 152 (284)
T ss_pred --CCChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCC
Confidence 1223345666665 554 3433 2 2 12233 344566778888641 122233 4
Q ss_pred ChHHHHHHHHHhCC-----ce--EEEEecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEE----eeCCCCHHHHHH
Q 021527 203 TPTDRMKAIVEASE-----GF--VYLVSSIGVTGARASISGHVQTLLREIKESST----KPVAV----GFGISKPEHVQQ 267 (311)
Q Consensus 203 t~~eri~~i~~~a~-----gf--iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~v----GfGIst~e~v~~ 267 (311)
++.+++.++.+... |. .--++..-++|. ..|..+.++++.+++... +|+-+ .+|-.. .|.-.
T Consensus 153 ~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~--a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~-AN~la 229 (284)
T cd07942 153 TELDFALEVCEAVIDVWQPTPENKIILNLPATVEV--ATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGV-AAAEL 229 (284)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCcceEEEccccccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHH-HHHHH
Confidence 55676666555421 21 112333346664 346678889999988652 33433 223332 44556
Q ss_pred HHHcCCcEEE
Q 021527 268 VAGWGADGVI 277 (311)
Q Consensus 268 v~~~GADGvI 277 (311)
.+++||+.+=
T Consensus 230 A~~aG~~~id 239 (284)
T cd07942 230 ALLAGADRVE 239 (284)
T ss_pred HHHhCCCEEE
Confidence 6789998763
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.31 Score=47.59 Aligned_cols=211 Identities=11% Similarity=0.118 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++.+ -++..|= -.+++...-++++.++.++.+|---.|-.-.+.. .+.+.
T Consensus 5 ~~k~lL~~A~~~~-yAVgAfN---~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g-----------------~~~~~ 63 (347)
T PRK09196 5 SLRQLLDHAAEHG-YGVPAFN---VNNLEQVQAIMEAADETDSPVILQASAGARKYAG-----------------EPFLR 63 (347)
T ss_pred cHHHHHHHHHHcC-ceEEEee---eCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCC-----------------HHHHH
Confidence 4567777765553 4555554 4578999999999999999987664333222222 22234
Q ss_pred HHHHHhhccCC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCC-------Chhh----HHHHHHHHHHcCCC
Q 021527 129 SMLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDV-------PLEE----TESLQKEAMKNKIE 194 (311)
Q Consensus 129 ~~i~~ir~~~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDl-------p~ee----~~~~~~~~~~~gi~ 194 (311)
.+++...++.. +||.+-. + +..-.+.+..+.++|.+.|.+ ..+ |+|| ..++.+.++.+|+.
T Consensus 64 ~~~~~~a~~~~~VPValHL--D---Hg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~ 138 (347)
T PRK09196 64 HLILAAVEEYPHIPVVMHQ--D---HGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVS 138 (347)
T ss_pred HHHHHHHHhCCCCcEEEEC--C---CCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 46666666664 9998853 2 222346788999999999888 345 8887 56788888888763
Q ss_pred eE----EE--e--------------------CCCChHHHHHHHHHhCCceEEE----EecCCccCC--CCCCCchHHHHH
Q 021527 195 LV----LF--T--------------------TPTTPTDRMKAIVEASEGFVYL----VSSIGVTGA--RASISGHVQTLL 242 (311)
Q Consensus 195 ~I----~l--i--------------------sp~t~~eri~~i~~~a~gfiY~----vs~~G~TG~--~~~~~~~~~~~l 242 (311)
+= .+ . .--|.++..++..+. .|..++ .+..|.+-. +...+.=-.+.+
T Consensus 139 VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~-TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL 217 (347)
T PRK09196 139 VEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKK-TQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRI 217 (347)
T ss_pred EEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHH-hCcCeEhhhhccccCCCCCCCCCChhhccHHHH
Confidence 21 01 0 002334444455443 344444 244453321 111000123578
Q ss_pred HHHhhcC-CCcEEE--eeCCC--------------------CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 243 REIKESS-TKPVAV--GFGIS--------------------KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 243 ~~vk~~~-~~Pv~v--GfGIs--------------------t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
++|++.+ ++|++. |.|+. ..|+++++.+.|.-=|=|+|.+....
T Consensus 218 ~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~ 284 (347)
T PRK09196 218 KEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAM 284 (347)
T ss_pred HHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHHHH
Confidence 8998988 799866 55551 46999999999999999999886644
|
|
| >PRK14567 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0089 Score=55.79 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=74.4
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHH----HHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHH-----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETE----SLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVE----- 213 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~----~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~----- 213 (311)
-...+++.|++.+++..- .+.|.. .-...+.++|+.+|+-+.- +.++| ++....
T Consensus 77 S~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGE-t~eere~g~~~~vv~~Ql~~~l~~i~~~ 155 (253)
T PRK14567 77 SARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGE-SLDDRQSGKLKQVLATQLSLILENLSVE 155 (253)
T ss_pred CHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCCHHHHHHHHHHHHHccCCHH
Confidence 345678888888888631 122222 2334567788887776664 33444 111111
Q ss_pred -hCCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhh
Q 021527 214 -ASEGFVYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQVAGWG-ADGVIVGS 280 (311)
Q Consensus 214 -~a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGS 280 (311)
...-.|-|.+ ..| ||.. ..+....+..+.+|+. .+++|++|++| +++++++++..+ .||+-||+
T Consensus 156 ~~~~ivIAYEPvWAIG-TG~~-as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGg 232 (253)
T PRK14567 156 QLAKVVIAYEPVWAIG-TGVV-ASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSL-KAENAKDILSLPDVDGGLIGG 232 (253)
T ss_pred HhCCEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcC-CHHHHHHHHcCCCCCEEEeeh
Confidence 0111233322 222 5542 2345566666667762 25899999999 599999998887 99999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+-.+
T Consensus 233 asL~ 236 (253)
T PRK14567 233 ASLK 236 (253)
T ss_pred hhhc
Confidence 9876
|
|
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.32 Score=47.49 Aligned_cols=224 Identities=17% Similarity=0.174 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
+.+++.++..+++| -++..|=+ .+++...-++++.++....+|---.|..-.++.|..+..--+-++-.| ...+
T Consensus 7 ~~~k~~L~~A~~~~-yAV~AfNv---~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~--~~~~ 80 (350)
T PRK09197 7 EDYQEMFDRAKENG-FALPAVNV---VGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLG--AIAG 80 (350)
T ss_pred HHHHHHHHHHHHCC-ceEEEEEe---CCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhh--HHHH
Confidence 45678888776554 46666653 478888999999999999987654333222222211000000000000 0114
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCH--HHHHHHHHHcC-----------CcEEEe--cCCChhh----HHHHHHHH
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGV--DNFMSTVRDIG-----------IRGLVV--PDVPLEE----TESLQKEA 188 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~--~~fi~~~~~aG-----------adGvii--pDlp~ee----~~~~~~~~ 188 (311)
..+++...++.++||.|-. + +... .++++.+.++| .+.|.+ ..+|+|| ..++.+.+
T Consensus 81 ~~~v~~~A~~~~VPValHL--D---Hg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~A 155 (350)
T PRK09197 81 AKHVHEVAEHYGVPVILHT--D---HCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERM 155 (350)
T ss_pred HHHHHHHHHHCCCCEEEEC--C---CCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHH
Confidence 5677888888899998853 1 1112 34677777766 888877 4688887 56788888
Q ss_pred HHcCCCeE----EE------e---C-----CCChHHHHHHHHHhCCc---eEEE-E---ecCCccC-CCCCCCchHHHHH
Q 021527 189 MKNKIELV----LF------T---T-----PTTPTDRMKAIVEASEG---FVYL-V---SSIGVTG-ARASISGHVQTLL 242 (311)
Q Consensus 189 ~~~gi~~I----~l------i---s-----p~t~~eri~~i~~~a~g---fiY~-v---s~~G~TG-~~~~~~~~~~~~l 242 (311)
+.+|+.+= .+ . . .-|.++..++..+...- ...+ + +..|.+- ....+ ..+.+
T Consensus 156 h~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~L---d~e~L 232 (350)
T PRK09197 156 AKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKL---RPEIL 232 (350)
T ss_pred HHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCcc---CHHHH
Confidence 88887421 11 1 0 02344555556554321 1333 3 3444332 11122 24678
Q ss_pred HHHhhcC---------CCcEEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 243 REIKESS---------TKPVAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 243 ~~vk~~~---------~~Pv~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+++++.+ ++|++. |.|+. .|+++++.+.|.-=|=|+|.+....
T Consensus 233 ~~I~~~v~~~~~~~~~~vPLVLHGgSGip-de~i~~ai~~GI~KINi~T~l~~a~ 286 (350)
T PRK09197 233 KDSQEYVSKKFGLPAKPFDFVFHGGSGST-LEEIREAVSYGVVKMNIDTDTQWAF 286 (350)
T ss_pred HHHHHHHHHhhCCCCCCCCEEEeCCCCCC-HHHHHHHHHCCCeeEEeCcHHHHHH
Confidence 8888877 799866 67775 6999999999999999999886644
|
|
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.32 Score=47.43 Aligned_cols=223 Identities=17% Similarity=0.185 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHH----HHHHHHHHHcCCCH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVI----QAAATRSLARGTNF 124 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~I----q~a~~~Al~~G~~~ 124 (311)
.+.+.|+..++++ -++..|= -.+++...-++++.++.+..+|----|-.-.+..|... |+++-+ ..
T Consensus 3 ~~k~iL~~A~~~~-yAV~AfN---~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~------~~ 72 (345)
T cd00946 3 DVLKLFDYAKENG-FAIPAVN---CTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIA------GA 72 (345)
T ss_pred HHHHHHHHHHHCC-ceEEEEe---eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhh------hH
Confidence 3566777665553 4555554 34778888999999999999876543321111112100 000000 00
Q ss_pred HHHHHHHHHhhccCCCcEEEEe---c------CcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHH
Q 021527 125 NAILSMLKEVVPQMSCPIALFT---Y------YNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAM 189 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~---Y------~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~ 189 (311)
..+..+++.+.++.++||.|-. . ++.+...+ .++++.+.+.|.+.|.+ ..+|+|| ..++.+.++
T Consensus 73 ~~~~~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a~-~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah 151 (345)
T cd00946 73 IAAAHHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEAD-EEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMA 151 (345)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHHH-HHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHH
Confidence 1245677777788899998863 1 11111111 34566677889999887 4688887 667888888
Q ss_pred HcCCCeEE---Ee--------CC-------CChHHHHHHHHHhC---CceEEE-E---ecCCccC-CCCCCCchHHHHHH
Q 021527 190 KNKIELVL---FT--------TP-------TTPTDRMKAIVEAS---EGFVYL-V---SSIGVTG-ARASISGHVQTLLR 243 (311)
Q Consensus 190 ~~gi~~I~---li--------sp-------~t~~eri~~i~~~a---~gfiY~-v---s~~G~TG-~~~~~~~~~~~~l~ 243 (311)
.+|+.+=- -+ .. -|.++...+..+.. .|...+ + +..|.+- ....++. +.|+
T Consensus 152 ~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~---~~L~ 228 (345)
T cd00946 152 KINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQP---EILG 228 (345)
T ss_pred HcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCH---HHHH
Confidence 88873210 01 00 24445555666543 254444 3 4445432 1223333 4555
Q ss_pred HH----hhcC------CCcEEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 244 EI----KESS------TKPVAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 244 ~v----k~~~------~~Pv~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
++ ++.+ ++|++. |.|+. .|+++++.+.|.-=|=|+|.+....
T Consensus 229 ~I~~~i~~~~~~~~~~~ipLVLHGgSG~~-~e~i~kai~~GI~KiNi~T~l~~a~ 282 (345)
T cd00946 229 EHQDYVREKLGLADDKPLYFVFHGGSGST-KEEIREAISYGVVKMNIDTDTQWAY 282 (345)
T ss_pred HHHHHHHHhhccccCCCCCEEEeCCCCCC-HHHHHHHHHcCCeeEEeCcHHHHHH
Confidence 55 5544 688765 67775 7999999999999999999886544
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.067 Score=50.57 Aligned_cols=171 Identities=15% Similarity=0.192 Sum_probs=98.7
Q ss_pred ChhhHHHHHHHHHHCC-----CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC
Q 021527 75 DLSTTAEALKLLDSCG-----SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY 148 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~G-----aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~ 148 (311)
+.++-+++++.|.+.| +|.||++ +|+. +| .+.++++.+. .+.|-+. ||
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~-s~~~--~d---------------------~~~v~~~~~~~~~~~~v~--~~ 72 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFF-LYTE--KD---------------------REAVEACLDRGYKFPEVT--GW 72 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEec-CcCh--HH---------------------HHHHHHHHHcCCCCCEEE--EE
Confidence 6678899999999999 9999994 5543 11 1233343322 2223322 22
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec----C--------CChhh----HHHHHHHHHHcCCCeEEEeCCCChH-------
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP----D--------VPLEE----TESLQKEAMKNKIELVLFTTPTTPT------- 205 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip----D--------lp~ee----~~~~~~~~~~~gi~~I~lisp~t~~------- 205 (311)
. ....+-++.+.++|++.+.+. | ...+| ..+..+.++++|+.+.+.+-..++.
T Consensus 73 ~----r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~ 148 (279)
T cd07947 73 I----RANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVL 148 (279)
T ss_pred e----cCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchH
Confidence 1 223566788999999988773 1 11233 4556777889998866655322222
Q ss_pred HHHHHHHHhC--CceEEEEecCCccCCCCC-----CCchHHHHHHHHhhcCCCc---EEE----eeCCCCHHHHHHHHHc
Q 021527 206 DRMKAIVEAS--EGFVYLVSSIGVTGARAS-----ISGHVQTLLREIKESSTKP---VAV----GFGISKPEHVQQVAGW 271 (311)
Q Consensus 206 eri~~i~~~a--~gfiY~vs~~G~TG~~~~-----~~~~~~~~l~~vk~~~~~P---v~v----GfGIst~e~v~~v~~~ 271 (311)
+.++++.+.. .|....++..-++|..++ +|..+.++++.+|+.++.| +-+ .+|.. ..+.-..+++
T Consensus 149 ~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla-~AN~laA~~a 227 (279)
T cd07947 149 PFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKA-VANAVAAWLY 227 (279)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChH-HHHHHHHHHh
Confidence 2445554532 343211222234554332 3456889999999876655 433 23333 2455666778
Q ss_pred CCcEE
Q 021527 272 GADGV 276 (311)
Q Consensus 272 GADGv 276 (311)
|++-+
T Consensus 228 G~~~v 232 (279)
T cd07947 228 GASWV 232 (279)
T ss_pred CCCEE
Confidence 98765
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.001 Score=59.65 Aligned_cols=66 Identities=30% Similarity=0.507 Sum_probs=51.8
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+.+.+- .|--|++.+.+. +++..+.+.+.-||++|+||+-.|++..+.+.|.+||+||||+.+-.
T Consensus 152 ~~lIvLD--i~aVGt~~G~~~---E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~ 217 (229)
T COG1411 152 PGLIVLD--IGAVGTKSGPDY---ELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGV 217 (229)
T ss_pred CCeEEEE--ccccccccCCCH---HHHHHHHHhccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCc
Confidence 4555552 133456656664 66777777778899999999999999999999999999999998744
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.31 Score=46.75 Aligned_cols=209 Identities=14% Similarity=0.141 Sum_probs=132.2
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..++++ -++..|= ..+++...-++++.++.+..+|--..|-.-.+ ...+.+..
T Consensus 5 ~k~lL~~A~~~~-yaV~AfN---~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~-----------------~g~~~~~~ 63 (307)
T PRK05835 5 GNEILLKAHKEG-YGVGAFN---FVNFEMLNAIFEAGNEENSPLFIQASEGAIKY-----------------MGIDMAVG 63 (307)
T ss_pred HHHHHHHHHHCC-ceEEEEE---ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhh-----------------CChHHHHH
Confidence 466676666554 4555554 34788889999999999999876542221111 12333455
Q ss_pred HHHHhhccCC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE----EE
Q 021527 130 MLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV----LF 198 (311)
Q Consensus 130 ~i~~ir~~~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I----~l 198 (311)
+++.+.++.+ +||.+-. + +.--.+.+..|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= .+
T Consensus 64 ~~~~~a~~~~~VPValHL--D---Hg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (307)
T PRK05835 64 MVKIMCERYPHIPVALHL--D---HGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRL 138 (307)
T ss_pred HHHHHHHhcCCCeEEEEC--C---CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 7777777775 9999852 2 222356888999999999988 4688887 6678888888887421 11
Q ss_pred e--------C----CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 199 T--------T----PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 199 i--------s----p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
- . .-|+++..++..+. .|..++ + +..|..-.+ +-|.=..+.|+++++.+++|++. |.|+.
T Consensus 139 gg~ed~~~~~~~~~~~TdPeeA~~Fv~~-TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~~I~~~~~iPLVLHGgSGip 216 (307)
T PRK05835 139 MGIEDNISVDEKDAVLVNPKEAEQFVKE-SQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQEVKRLTNIPLVLHGASAIP 216 (307)
T ss_pred CCccCCcccccccccCCCHHHHHHHHHh-hCCCEEEEccCccccccCCC-CCCccCHHHHHHHHHHhCCCEEEeCCCCCc
Confidence 0 0 02334545555553 344444 3 333332100 11111236788898888999876 66775
Q ss_pred CH--------------------HHHHHHHHcCCcEEEEhhHhhchh
Q 021527 261 KP--------------------EHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 261 t~--------------------e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.- |+++++.+.|.-=|=|+|.+-...
T Consensus 217 ~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~ 262 (307)
T PRK05835 217 DDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAF 262 (307)
T ss_pred hHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHHH
Confidence 32 389999999999999999886544
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.1 Score=52.66 Aligned_cols=184 Identities=13% Similarity=0.150 Sum_probs=105.5
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
..+.++...+.|+|++=+-+.-..|= -++.+..-++.+.+. -.+|.++. | -..+.
T Consensus 266 ~~eda~~a~~~GaD~lGfIf~~~SpR----------------~V~~~~a~~i~~~l~---v~~VgVfv--~----~~~~~ 320 (454)
T PRK09427 266 RPQDAKAAYDAGAVYGGLIFVEKSPR----------------YVSLEQAQEIIAAAP---LRYVGVFR--N----ADIED 320 (454)
T ss_pred CHHHHHHHHhCCCCEEeeEeCCCCCC----------------CCCHHHHHHHHHhCC---CCEEEEEe--C----CCHHH
Confidence 56778889999999987754223331 123322222333332 12466653 3 23455
Q ss_pred HHHHHHHcCCcEEEecC-CChhhHHHHHHHHHH---cCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 159 FMSTVRDIGIRGLVVPD-VPLEETESLQKEAMK---NKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 159 fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~---~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
..+.+.+++.|.+=++. .+++ +.+.+++ .++..+..+......+ .... ... .++.+-+..|.||.. .
T Consensus 321 i~~i~~~~~lD~vQLHG~e~~~----~~~~l~~~~~~~~~iikai~v~~~~~-~~~~-~~~-d~~LlDs~~GGtG~~--~ 391 (454)
T PRK09427 321 IVDIAKQLSLAAVQLHGDEDQA----YIDALREALPKTCQIWKAISVGDTLP-ARDL-QHV-DRYLLDNGQGGTGQT--F 391 (454)
T ss_pred HHHHHHHcCCCEEEeCCCCCHH----HHHHHHhhcCCCCeEEEEeecCchhh-hhhh-cCC-CEEEEcCCCCCCCCc--c
Confidence 55668899999998874 3333 3333443 2355555544432212 1111 111 233333555667753 3
Q ss_pred CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+.. .+.. ....|++..+|++ |+|+.++...+.+||=|-|.+...- .....+++++|++.++.
T Consensus 392 DW~---~l~~---~~~~p~iLAGGL~-peNV~~ai~~~P~gVDVsSGVE~~p-----G~KD~~Ki~~Fi~~vr~ 453 (454)
T PRK09427 392 DWS---LLPG---QSLDNVLLAGGLN-PDNCQQAAQLGCAGLDFNSGVESAP-----GIKDAQKLASVFQTLRA 453 (454)
T ss_pred ChH---Hhhh---cccCCEEEECCCC-HHHHHHHHhcCCCEEEeCCcccCCC-----CCcCHHHHHHHHHHHhh
Confidence 332 2322 2257999999996 8999998888999999988876421 12346889999988764
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.09 Score=49.45 Aligned_cols=182 Identities=18% Similarity=0.238 Sum_probs=106.8
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIAL 144 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiil 144 (311)
||=--|.-|.+.+.+.++.+.+.|+|.|-+.--- -+++ -.+.++..++++.+.+. -++||+.
T Consensus 9 Pf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~Gst----GE~~------------~Ls~~Er~~~~~~~~~~~~~~~~vi~ 72 (285)
T TIGR00674 9 PFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTT----GESP------------TLSHEEHKKVIEFVVDLVNGRVPVIA 72 (285)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccC----cccc------------cCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 3444577888999999999999999999884111 1111 13455555666665543 3588877
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEec-----CCChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHH
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVP-----DVPLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVE 213 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviip-----Dlp~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~ 213 (311)
-.-.+... ..-+..+.++++|+|++++. -...++..+ |...+++.++.++++=.|. .+.+-++++++
T Consensus 73 gv~~~s~~--~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 73 GTGSNATE--EAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred eCCCccHH--HHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 65433221 12346677899999999883 122245544 4555666788877664453 23466666654
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.. .++.+ +.... +. ..+.++++.. +..++.|.. +..-..+..|+||.+.|.+-
T Consensus 151 ~~-~v~gi---------K~s~~-d~-~~~~~l~~~~~~~~~v~~G~d----~~~~~~~~~G~~G~i~~~~~ 205 (285)
T TIGR00674 151 EP-NIVAI---------KEATG-NL-ERISEIKAIAPDDFVVLSGDD----ALTLPMMALGGKGVISVTAN 205 (285)
T ss_pred CC-CEEEE---------EeCCC-CH-HHHHHHHHhcCCCeEEEECch----HHHHHHHHcCCCEEEehHHH
Confidence 32 33332 11111 11 2344444433 355655543 45556677999999988663
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.063 Score=50.60 Aligned_cols=179 Identities=18% Similarity=0.212 Sum_probs=102.5
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecC
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYY 148 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~ 148 (311)
-|.-|.+.+.+.++.|.+.|+|.+-+.--- .+++ -.+.++..++++.+++. -++||+.-...
T Consensus 16 dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~----GE~~------------~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 79 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIANGTDGLVVVGTT----GESP------------TLTHEEHEELIRAVVEAVNGRVPVIAGTGS 79 (292)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCcC----Cccc------------cCCHHHHHHHHHHHHHHhCCCCcEEeecCC
Confidence 345567899999999999999999874111 1121 14556666677666654 34787765443
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEe--cCC---ChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHHhCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVV--PDV---PLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVEASEG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGvii--pDl---p~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~~a~g 217 (311)
+... ..-+.++.++++|+|++++ |.. ..++..+ |...+...++.++++=.|. .+.+-++++++ -..
T Consensus 80 ~~~~--~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~-~p~ 156 (292)
T PRK03170 80 NSTA--EAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAE-HPN 156 (292)
T ss_pred chHH--HHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHc-CCC
Confidence 2211 1235677889999999988 221 1244544 4555666678777664453 23466666643 233
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+=.. +| ++ ..+.++++..+-.+.+-.|-. +.+......|+||.+.|.+
T Consensus 157 v~giK~s---~~-------d~-~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~ 207 (292)
T PRK03170 157 IVGIKEA---TG-------DL-ERVSELIELVPDDFAVYSGDD--ALALPFLALGGVGVISVAA 207 (292)
T ss_pred EEEEEEC---CC-------CH-HHHHHHHHhCCCCeEEEECCh--HhHHHHHHcCCCEEEEhHH
Confidence 4433110 11 12 234444333322344444432 3455666799999998855
|
|
| >PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.17 Score=48.19 Aligned_cols=218 Identities=12% Similarity=0.130 Sum_probs=133.7
Q ss_pred CccEEE-EEeCCCCChhhH-HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 62 KVALIP-YITAGDPDLSTT-AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 62 ~~~li~-yi~~G~P~~~~~-~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
++.+-. +..|-..+.... .+.++.|.+.+.|.+-+- +.+|+-.. ....+++..++++..
T Consensus 22 ~~~vS~E~~PPk~~~~~~~l~~~~~~l~~~~p~fvsVT------~~~~~~~~-------------~r~~~~a~~i~~~~g 82 (296)
T PRK09432 22 QINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVT------YGANSGER-------------DRTHSIIKGIKKRTG 82 (296)
T ss_pred CcEEEEEEeCcCCchHHHHHHHHHHHHHhcCCCEEEEe------cCCCCcHH-------------HHHHHHHHHHHHHhC
Confidence 443433 556777776544 488899999999977663 33443211 223446667766666
Q ss_pred CcEEEE-ecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChh------hHHHHHHHHHHcCCCeE-EEe----CCCCh-
Q 021527 140 CPIALF-TYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLE------ETESLQKEAMKNKIELV-LFT----TPTTP- 204 (311)
Q Consensus 140 iPiilm-~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~e------e~~~~~~~~~~~gi~~I-~li----sp~t~- 204 (311)
++.+.- +..+ .....+...+..+.+.|++.+++ .|-|.. ...++.+.+++.+.-.+ .-. .|..+
T Consensus 83 ~~~i~Hltcr~-~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp~~~~ 161 (296)
T PRK09432 83 LEAAPHLTCID-ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHPEAKS 161 (296)
T ss_pred CCeeeecccCC-CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCCCCCCC
Confidence 665443 3333 23335567788899999999888 464421 13356666666533222 112 23332
Q ss_pred -HHHHHHHH-HhCCceEEEEecCCccCCCCCC-CchHHHHHHHHhhc-CCCcEEEee-CCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 -TDRMKAIV-EASEGFVYLVSSIGVTGARASI-SGHVQTLLREIKES-STKPVAVGF-GISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 -~eri~~i~-~~a~gfiY~vs~~G~TG~~~~~-~~~~~~~l~~vk~~-~~~Pv~vGf-GIst~e~v~~v~~~GADGvIVG 279 (311)
+..++.+. +...|..|++|-. -+ +..+.++++++++. .++||++|. ++.+..++..+.+ .-||-|-
T Consensus 162 ~~~dl~~Lk~K~~aGA~~~iTQ~-------~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~--~~Gv~vP 232 (296)
T PRK09432 162 AQADLINLKRKVDAGANRAITQF-------FFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFAD--MTNVRIP 232 (296)
T ss_pred HHHHHHHHHHHHHcCCCeeeccc-------ccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHH--ccCCCCC
Confidence 22222222 2235555665422 22 34577899999875 589999995 7899999999864 4799999
Q ss_pred hHhhchhhhcCCc-h----hHHHHHHHHHHHHHh
Q 021527 280 SAMVKLLGEAQSP-E----EGLKELEKFAKSLKS 308 (311)
Q Consensus 280 Saiv~~~~~~~~~-~----~~~~~~~~~~~~l~~ 308 (311)
..+.+.++...+. + .+++...+++++|.+
T Consensus 233 ~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 233 AWMAKMFDGLDDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875432 2 456677788888765
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0031 Score=57.54 Aligned_cols=75 Identities=23% Similarity=0.381 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH--cCCcEEEEhh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG--WGADGVIVGS 280 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~--~GADGvIVGS 280 (311)
.|.+..+.+.+..-..+|++...|..|. +...+.++++.+. .|+.+|+||+|.|+++++.. .|||=||+||
T Consensus 37 dP~~~a~~~~~~g~~~l~ivDLd~~~~~-----~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 37 SPDDAAKVIEEIGARFIYIADLDRIVGL-----GDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CHHHHHHHHHHcCCCEEEEEEcccccCC-----cchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 4556666666544556899988774332 1224678888776 49999999999999999954 2599999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
..++
T Consensus 110 ~a~~ 113 (221)
T TIGR00734 110 ETLD 113 (221)
T ss_pred hhhC
Confidence 8876
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.12 Score=48.61 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEE----ecCcchh
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALF----TYYNPIL 152 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm----~Y~n~i~ 152 (311)
-..++++...++|+|+|.+..|.+| + +++.+.++..|+.- .+-+.++ +.+++-+
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~~-------~--------------~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~ 150 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALND-------V--------------RNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEY 150 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCh-------H--------------HHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHH
Confidence 4567888899999999999988877 1 23344555555432 1112222 1122111
Q ss_pred ccCHHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCc
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~ 227 (311)
+.++++.+.++|+|.+.+.| +.+++..++...++++ ++.+-+-...+.--.-...++....|.-++-+..+.
T Consensus 151 ---~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~G 227 (275)
T cd07937 151 ---YVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISP 227 (275)
T ss_pred ---HHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 24566778999999999998 5677888877777653 433333333333223333344445688777433333
Q ss_pred cCCCCCCCchHHHHHHHHhh
Q 021527 228 TGARASISGHVQTLLREIKE 247 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~ 247 (311)
-|.+.+ +..+++++..++.
T Consensus 228 lG~~aG-N~~~E~l~~~L~~ 246 (275)
T cd07937 228 LSGGTS-QPSTESMVAALRG 246 (275)
T ss_pred ccCCcC-ChhHHHHHHHHHc
Confidence 455544 3345666666654
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.014 Score=59.67 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCcEEEecCCChhh---HHHHHHHHHH-cCCCeEEEeC-CCChHHHHHHHHHhCCceEEEEecCC---ccC
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEE---TESLQKEAMK-NKIELVLFTT-PTTPTDRMKAIVEASEGFVYLVSSIG---VTG 229 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee---~~~~~~~~~~-~gi~~I~lis-p~t~~eri~~i~~~a~gfiY~vs~~G---~TG 229 (311)
+-++.+.++|+|.+.+. ..... ..+..+.+++ ++.+...... -.| .+..+...+..-.++.+.-.-| +|-
T Consensus 245 ~ra~~Lv~aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t-~e~a~~li~aGAd~I~vg~g~Gs~c~tr 322 (502)
T PRK07107 245 ERVPALVEAGADVLCID-SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVD-REGFRYLAEAGADFVKVGIGGGSICITR 322 (502)
T ss_pred HHHHHHHHhCCCeEeec-CcccccHHHHHHHHHHHHhCCCCceEEeccccC-HHHHHHHHHcCCCEEEECCCCCcCcccc
Confidence 34556788999998765 43332 2344444444 3422222232 334 3444445454445555511111 222
Q ss_pred CCCCCCchHHHHHHHHhhc-------CC--CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 230 ARASISGHVQTLLREIKES-------ST--KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~-------~~--~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
...+....-..-+.++.+. .+ +||++.+||++.-|+.+.+.+|||.|-+|+.|.-.-
T Consensus 323 ~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~ 388 (502)
T PRK07107 323 EQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFD 388 (502)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccc
Confidence 2233322112223333331 23 899999999999999999999999999999997644
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.22 Score=49.17 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=107.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|+.-+-++.-+.+..-. | ...+.+.++++.+++ ..+++.+ - +..
T Consensus 117 s~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e-~-------------~~~e~i~eiir~ik~-~~l~i~~--s-~G~--- 175 (379)
T PLN02389 117 SKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGR-K-------------TNFNQILEYVKEIRG-MGMEVCC--T-LGM--- 175 (379)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecccCCCCC-h-------------hHHHHHHHHHHHHhc-CCcEEEE--C-CCC---
Confidence 34678888998889999998886433221110 0 123567788888874 4444332 1 111
Q ss_pred CHHHHHHHHHHcCCcEEEec-C------------CChhhHHHHHHHHHHcCCCeEE--Ee-CCCChHHHHHHHHHh---C
Q 021527 155 GVDNFMSTVRDIGIRGLVVP-D------------VPLEETESLQKEAMKNKIELVL--FT-TPTTPTDRMKAIVEA---S 215 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviip-D------------lp~ee~~~~~~~~~~~gi~~I~--li-sp~t~~eri~~i~~~---a 215 (311)
=.++.++.++++|+|.+.+. | -.+++..+..+.+++.|++.-. ++ -..+.++|+..+... .
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~ 255 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLP 255 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcc
Confidence 12678899999999987551 1 1234556677888999996522 11 245666765444332 1
Q ss_pred --CceEEEEecCCccCCCC--CCCchH---HHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH-hhc
Q 021527 216 --EGFVYLVSSIGVTGARA--SISGHV---QTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA-MVK 284 (311)
Q Consensus 216 --~gfiY~vs~~G~TG~~~--~~~~~~---~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa-iv~ 284 (311)
...+.+.......|+.- .-+.+. ...+.-.|-.. .+++..|.-...++.....+.+|||++++|-. +.-
T Consensus 256 ~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt 335 (379)
T PLN02389 256 EHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTT 335 (379)
T ss_pred cCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCC
Confidence 12233222222333321 111223 33344444444 35666666344556668888999999999998 544
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.15 Score=48.26 Aligned_cols=176 Identities=14% Similarity=0.130 Sum_probs=103.4
Q ss_pred CCCChhhHHHHHHHHHH-CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecC
Q 021527 72 GDPDLSTTAEALKLLDS-CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYY 148 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~-~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~ 148 (311)
|.-|.+.+.+.++.+.+ .|++.|-++---.+ + .-.+.++-.++++.+.+. -++||+.-.-.
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE----~------------~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGE----A------------FLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccc----c------------ccCCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 55667899999999999 99999988621111 1 114555666666666553 35787775433
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHHhCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVEASEG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~~a~g 217 (311)
+... ..-+..+.+.++|+|++++. - ...++..+ |...+...++.++++=.|. .+.+-+.++++ -..
T Consensus 83 ~~t~--~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~-~pn 159 (293)
T PRK04147 83 VNTA--EAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT-LPK 159 (293)
T ss_pred CCHH--HHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc-CCC
Confidence 3221 12346677899999999884 1 12245554 4555666778776664442 24566777764 345
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++++=.. +| +. ..+.++++.. +.-++.|.. +.+...+..|+||++.|++
T Consensus 160 vvgiK~s---~~-------d~-~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~ 209 (293)
T PRK04147 160 VIGVKQT---AG-------DL-YQLERIRKAFPDKLIYNGFD----EMFASGLLAGADGAIGSTY 209 (293)
T ss_pred EEEEEeC---CC-------CH-HHHHHHHHhCCCCEEEEeeh----HHHHHHHHcCCCEEEechh
Confidence 5544211 11 12 2244443332 444555442 4556666799999998764
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.25 Score=48.32 Aligned_cols=210 Identities=14% Similarity=0.201 Sum_probs=121.3
Q ss_pred EEeCCCCC----hhhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 68 YITAGDPD----LSTTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 68 yi~~G~P~----~~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
++.+| |. .+...+.++.+.+.|+.++-=|. |=+.|+.- .|.. ++.+++++++++++++|
T Consensus 103 ~vIAG-PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf-------------~G~g-~~gl~~L~~~~~e~Gl~ 167 (352)
T PRK13396 103 VVVAG-PCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAF-------------QGHG-ESALELLAAAREATGLG 167 (352)
T ss_pred EEEEe-CCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCccc-------------CCch-HHHHHHHHHHHHHcCCc
Confidence 56777 53 36899999999999999876432 22344332 2344 67789999999999999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC--hHHH---HHHHHHhCC
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT--PTDR---MKAIVEASE 216 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t--~~er---i~~i~~~a~ 216 (311)
++--.+ + .+-++.+.+. +|.+-|+---... ..+.+++.+.|. +|.+-...+ .+|. ++.+.+...
T Consensus 168 ~~tev~-d-------~~~v~~~~~~-~d~lqIga~~~~n-~~LL~~va~t~k-PVllk~G~~~t~ee~~~A~e~i~~~Gn 236 (352)
T PRK13396 168 IITEVM-D-------AADLEKIAEV-ADVIQVGARNMQN-FSLLKKVGAQDK-PVLLKRGMAATIDEWLMAAEYILAAGN 236 (352)
T ss_pred EEEeeC-C-------HHHHHHHHhh-CCeEEECcccccC-HHHHHHHHccCC-eEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 876432 1 3455556565 8998888443333 335566666674 555554443 3332 222322222
Q ss_pred -ceEEEEecCCc---c-CCCCCCCchHHHHHHHHhhcCCCcEEEe----eCC--CCHHHHHHHHHcCCcEEEEhhHhhc-
Q 021527 217 -GFVYLVSSIGV---T-GARASISGHVQTLLREIKESSTKPVAVG----FGI--SKPEHVQQVAGWGADGVIVGSAMVK- 284 (311)
Q Consensus 217 -gfiY~vs~~G~---T-G~~~~~~~~~~~~l~~vk~~~~~Pv~vG----fGI--st~e~v~~v~~~GADGvIVGSaiv~- 284 (311)
.++.|-. |+ + +.. ....+ ...+..+|+.+++||++. .|- ..+........+||||++|=..+.-
T Consensus 237 ~~viL~er--G~rtf~s~y~-~~~~d-l~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd 312 (352)
T PRK13396 237 PNVILCER--GIRTFDRQYT-RNTLD-LSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPA 312 (352)
T ss_pred CeEEEEec--CCccCcCCCC-CCCcC-HHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcc
Confidence 3555532 22 1 221 11222 345778888889999773 243 2345566777899999998654432
Q ss_pred -hhhhcCCchhHHHHHHHHHHHHHh
Q 021527 285 -LLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 285 -~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.+.++. ..-..+++++++++++.
T Consensus 313 ~AlsD~~-qsl~p~~~~~l~~~i~~ 336 (352)
T PRK13396 313 KALSDGP-QSLTPDRFDRLMQELAV 336 (352)
T ss_pred cCCChhh-hcCCHHHHHHHHHHHHH
Confidence 222111 01114566666666653
|
|
| >PTZ00333 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.016 Score=54.11 Aligned_cols=122 Identities=21% Similarity=0.321 Sum_probs=73.8
Q ss_pred HHHHHHHcCCcEEEecC----CCh----hhHHHHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHHhCCc-
Q 021527 159 FMSTVRDIGIRGLVVPD----VPL----EETESLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVEASEG- 217 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~----ee~~~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~a~g- 217 (311)
-...+++.|++.+++.. ..+ +...+-...+.++|+.+|+-+.-+. ++| ++...+.-+.
T Consensus 81 S~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~-~~~~~~~~~~~v~~Ql~~~l~~v~~~ 159 (255)
T PTZ00333 81 SAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETL-EEREAGQTSDVLSKQLEAIVKKVSDE 159 (255)
T ss_pred CHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCH-HHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 45678999999999963 222 2233445567889998887766432 221 2222211111
Q ss_pred -----eEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHH-HHcCCcEEEEh
Q 021527 218 -----FVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQV-AGWGADGVIVG 279 (311)
Q Consensus 218 -----fiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v-~~~GADGvIVG 279 (311)
+|-|.+ ..| ||.. ..++...+.++.+|+. .+++|++|++|+ ++++.++ ...+.||+-||
T Consensus 160 ~~~~iiIAYEPvWAIG-tg~~-a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~-~~N~~~l~~~~~vDG~LvG 236 (255)
T PTZ00333 160 AWDNIVIAYEPVWAIG-TGKV-ATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVN-EKNCKELIKQPDIDGFLVG 236 (255)
T ss_pred HcceEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCC-HHHHHHHhcCCCCCEEEEe
Confidence 233322 223 5543 2345566666667662 148999999998 5777665 45678999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
++-.+
T Consensus 237 ~asl~ 241 (255)
T PTZ00333 237 GASLK 241 (255)
T ss_pred hHhhh
Confidence 98875
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.084 Score=49.60 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=76.0
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcC-C--------cEEEecCCChh---hHHHHHHHHHHcCC-CeEEEeCCCChHH
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIG-I--------RGLVVPDVPLE---ETESLQKEAMKNKI-ELVLFTTPTTPTD 206 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aG-a--------dGviipDlp~e---e~~~~~~~~~~~gi-~~I~lisp~t~~e 206 (311)
.++.+++--.+. .|...|.+.+..+| . |.+++-|=-++ ....-.+.+++..- +...-+++.+.++
T Consensus 116 ~~~~i~~TRKt~--Pg~r~~~k~Av~~GGg~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~ee 193 (269)
T cd01568 116 TKARIADTRKTT--PGLRLLEKYAVRAGGGDNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEE 193 (269)
T ss_pred CCEEEeecCCCC--hhhHHHHHHHHHhCCCccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHH
Confidence 456776533322 35566777666554 2 34554331111 12223344555432 4556678888755
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
-.+.+ . .|..|+.- +. -.+..+.+.++.+++..++|+++-+||+ ++++.++.+.|+|++.+|+.+..
T Consensus 194 a~~A~-~--~gaD~I~l--d~-----~~~e~l~~~v~~i~~~~~i~i~asGGIt-~~ni~~~a~~Gad~Isvgal~~s 260 (269)
T cd01568 194 AEEAL-E--AGADIIML--DN-----MSPEELKEAVKLLKGLPRVLLEASGGIT-LENIRAYAETGVDVISTGALTHS 260 (269)
T ss_pred HHHHH-H--cCCCEEEE--CC-----CCHHHHHHHHHHhccCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEcHHHcC
Confidence 44332 2 46666632 11 1123455555555544468999999996 89999999999999999765543
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.25 Score=46.08 Aligned_cols=174 Identities=13% Similarity=0.214 Sum_probs=108.2
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCCh------------hhHHHHHHHHHHc
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPL------------EETESLQKEAMKN 191 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~------------ee~~~~~~~~~~~ 191 (311)
........++++.++|.+.---........++..+..+.+.|++.+++ .|.|. ..+.++.+.++..
T Consensus 45 ~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~ 124 (274)
T cd00537 45 MTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKE 124 (274)
T ss_pred hHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 345577777777666654432111122345677888899999998877 35442 2367777777764
Q ss_pred ---CCCeEE----EeCCCCh--HHHHHHHH-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEee-C
Q 021527 192 ---KIELVL----FTTPTTP--TDRMKAIV-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGF-G 258 (311)
Q Consensus 192 ---gi~~I~----lisp~t~--~eri~~i~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGf-G 258 (311)
++..-. -..|... +..++.+. +...|..|++|-. -.+ ..+.++++++|+. .++||++|. +
T Consensus 125 ~~~~~~igva~yPe~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~-------~fd~~~~~~~~~~~~~~gi~vPIi~GI~p 197 (274)
T cd00537 125 NGGGFSIGVAAYPEGHPEAPSLEEDIKRLKRKVDAGADFIITQL-------FFDNDAFLRFVDRCRAAGITVPIIPGIMP 197 (274)
T ss_pred cCCCCccccccCCCcCCCCCCHHHHHHHHHHHHHCCCCEEeecc-------cccHHHHHHHHHHHHHcCCCCCEEeeccc
Confidence 222111 1234432 22232222 2345777776533 233 4578889999886 479999996 5
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchhhhcC-Cc----hhHHHHHHHHHHHHHh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ-SP----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~~~~~-~~----~~~~~~~~~~~~~l~~ 308 (311)
+.+..++..+.++ . ||-|-..+.+.++... +. +.+.+-+.++++++++
T Consensus 198 ~~s~~~l~~~~~~-~-Gv~vP~~~~~~l~~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 198 LTSYKQAKRFAKL-C-GVEIPDWLLERLEKLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred cCCHHHHHHHHHh-h-CCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999888 6 9999999999986321 11 2445556666766655
|
5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease. |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.29 Score=46.90 Aligned_cols=177 Identities=15% Similarity=0.142 Sum_probs=100.2
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cCCCcEEEEecCcc-h
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QMSCPIALFTYYNP-I 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~~iPiilm~Y~n~-i 151 (311)
|.++...+.++.+.++|+|.+-+- -| +++.... ..++|+++-....+ +
T Consensus 56 ~gl~dp~~~i~~~~~~g~dav~~~--------~G----------------------~l~~~~~~~~~~~lIlkl~~~t~l 105 (304)
T PRK06852 56 KDDADPEHLFRIASKAKIGVFATQ--------LG----------------------LIARYGMDYPDVPYLVKLNSKTNL 105 (304)
T ss_pred cccCCHHHHHHHHHhcCCCEEEeC--------HH----------------------HHHhhccccCCCcEEEEECCCCCc
Confidence 355667778888999999999984 12 4444332 24688777632210 1
Q ss_pred hc------c-CHHHHHHHHHHcC------CcEEEec---CCC-----hhhHHHHHHHHHHcCCCeEEEeCCCCh------
Q 021527 152 LK------R-GVDNFMSTVRDIG------IRGLVVP---DVP-----LEETESLQKEAMKNKIELVLFTTPTTP------ 204 (311)
Q Consensus 152 ~~------~-g~~~fi~~~~~aG------adGviip---Dlp-----~ee~~~~~~~~~~~gi~~I~lisp~t~------ 204 (311)
+. + -.---++++.+.| +|+|-+. .-. +++..++.++|+++|+.++..+.|.-+
T Consensus 106 ~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~ 185 (304)
T PRK06852 106 VKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEK 185 (304)
T ss_pred CCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCc
Confidence 10 0 1112356788877 8888773 211 134566788999999998876544332
Q ss_pred -HHHHHHHHHhC--CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCC-H----HHHHHHHH-cCCc
Q 021527 205 -TDRMKAIVEAS--EGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISK-P----EHVQQVAG-WGAD 274 (311)
Q Consensus 205 -~eri~~i~~~a--~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst-~----e~v~~v~~-~GAD 274 (311)
.+.+.-.++.+ -|...+=. -.|+.+...+ .+.++++-+.+ .+||++-+|=++ . +.++...+ .||.
T Consensus 186 ~~~~ia~aaRiaaELGADIVKv--~y~~~~~~g~---~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~ 260 (304)
T PRK06852 186 DPHLIAGAAGVAACLGADFVKV--NYPKKEGANP---AELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGAS 260 (304)
T ss_pred cHHHHHHHHHHHHHHcCCEEEe--cCCCcCCCCC---HHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 12332222221 23322211 1232211111 24466666667 799888777763 2 24555556 8999
Q ss_pred EEEEhhHhhch
Q 021527 275 GVIVGSAMVKL 285 (311)
Q Consensus 275 GvIVGSaiv~~ 285 (311)
|+++|=-+...
T Consensus 261 Gv~~GRNIfQ~ 271 (304)
T PRK06852 261 GNATGRNIHQK 271 (304)
T ss_pred eeeechhhhcC
Confidence 99999766653
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.083 Score=51.40 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=103.7
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cc-CCCcEEEEecCcch
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV-PQ-MSCPIALFTYYNPI 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir-~~-~~iPiilm~Y~n~i 151 (311)
|.++.....++.+.++|+|.+-+- -| +++... .. .++|+++-...++-
T Consensus 88 ~gl~dp~~~i~~a~~~g~dAv~~~--------~G----------------------~l~~~~~~~~~~iplIlkln~~t~ 137 (348)
T PRK09250 88 PLYFDPENIVKLAIEAGCNAVAST--------LG----------------------VLEAVARKYAHKIPFILKLNHNEL 137 (348)
T ss_pred CcccCHHHHHHHHHhcCCCEEEeC--------HH----------------------HHHhccccccCCCCEEEEeCCCCC
Confidence 566677788889999999999884 12 444422 22 36887776422211
Q ss_pred h------ccCHHHHHHHHHHcCCcEEEec---CCC-----hhhHHHHHHHHHHcCCCeEEEeCCCCh-----------HH
Q 021527 152 L------KRGVDNFMSTVRDIGIRGLVVP---DVP-----LEETESLQKEAMKNKIELVLFTTPTTP-----------TD 206 (311)
Q Consensus 152 ~------~~g~~~fi~~~~~aGadGviip---Dlp-----~ee~~~~~~~~~~~gi~~I~lisp~t~-----------~e 206 (311)
+ ..-.---++++.+.|+|+|-+. .-. +++..++.++|+++|+.++..+.|.-+ .+
T Consensus 138 l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d 217 (348)
T PRK09250 138 LSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAAD 217 (348)
T ss_pred CCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHH
Confidence 1 0011124678999999998773 211 234566788999999998876543321 23
Q ss_pred HHHHHHH----hCCceEEEEecCCccCCCCC----------------C-CchHHHHHHHHhhcC---CCcEEEeeCCCC-
Q 021527 207 RMKAIVE----ASEGFVYLVSSIGVTGARAS----------------I-SGHVQTLLREIKESS---TKPVAVGFGISK- 261 (311)
Q Consensus 207 ri~~i~~----~a~gfiY~vs~~G~TG~~~~----------------~-~~~~~~~l~~vk~~~---~~Pv~vGfGIst- 261 (311)
.+.-.+. +...+|= +. .||.... . .....+.++.+-+.+ .+||++.+|=++
T Consensus 218 ~Ia~AaRiaaELGADIVK-v~---yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~ 293 (348)
T PRK09250 218 LTGQANHLAATIGADIIK-QK---LPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKG 293 (348)
T ss_pred HHHHHHHHHHHHcCCEEE-ec---CCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCC
Confidence 3322222 1223331 21 1221111 1 112345566665655 689888888763
Q ss_pred H----HHHHHH---HHcCCcEEEEhhHhhch
Q 021527 262 P----EHVQQV---AGWGADGVIVGSAMVKL 285 (311)
Q Consensus 262 ~----e~v~~v---~~~GADGvIVGSaiv~~ 285 (311)
. +.+..+ .+.||.|+++|=-+...
T Consensus 294 ~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~ 324 (348)
T PRK09250 294 EDDLLDAVRTAVINKRAGGMGLIIGRKAFQR 324 (348)
T ss_pred HHHHHHHHHHHHHhhhcCCcchhhchhhhcC
Confidence 2 346677 78899999999766653
|
|
| >PLN02429 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=56.45 Aligned_cols=122 Identities=19% Similarity=0.300 Sum_probs=73.4
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHHHHHHH----HHHcCCCeEEEeCCCChHHH------------HHHHHHhCCc-
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETESLQKE----AMKNKIELVLFTTPTTPTDR------------MKAIVEASEG- 217 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~~~~~~----~~~~gi~~I~lisp~t~~er------------i~~i~~~a~g- 217 (311)
-.+.+++.|++.+|+.. ..+.|..+.... +.++|+.+|+-+..+ .++| ++.+.+.-..
T Consensus 139 Sa~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~-l~ere~g~t~~vi~~Ql~~~l~~v~~~ 217 (315)
T PLN02429 139 SVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEK-LEEREAGKTFDVCFAQLKAFADAVPSW 217 (315)
T ss_pred CHHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCC-HHHHhCCCHHHHHHHHHHHHHccCCcc
Confidence 45678999999999963 223455555555 889999988777643 2221 2222221112
Q ss_pred ---eEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhH
Q 021527 218 ---FVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQVA-GWGADGVIVGSA 281 (311)
Q Consensus 218 ---fiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSa 281 (311)
+|-|.+ ..| ||.. ..+.+..+..+.+|+. .+++|++|++|+ ++++.++. ..+.||+-||++
T Consensus 218 ~~ivIAYEPvWAIG-TGk~-as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~-~~N~~el~~~~diDG~LVGgA 294 (315)
T PLN02429 218 DNIVVAYEPVWAIG-TGKV-ASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVN-GGNSAELAKEEDIDGFLVGGA 294 (315)
T ss_pred cceEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccC-HHHHHHHhcCCCCCEEEeecc
Confidence 232222 223 4532 2233444444444421 257999999998 56666655 667999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 295 SL~ 297 (315)
T PLN02429 295 SLK 297 (315)
T ss_pred eec
Confidence 885
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.15 Score=48.32 Aligned_cols=178 Identities=10% Similarity=0.101 Sum_probs=103.5
Q ss_pred eCCCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEe
Q 021527 70 TAGDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFT 146 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~ 146 (311)
--|..|.+.+.+.++.+.+.| +|.|-++--..+ + .-.+.++-.++++.+.+. -++||+.-.
T Consensus 14 ~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE----~------------~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv 77 (290)
T TIGR00683 14 EDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGE----N------------FMLSTEEKKEIFRIAKDEAKDQIALIAQV 77 (290)
T ss_pred CCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccc----c------------ccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 346677889999999999999 999988511111 1 114555666666666544 358888765
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecC-----CChhhHHHHHHH-HHHc-CCCeEEEeCCC-----ChHHHHHHHHHh
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEETESLQKE-AMKN-KIELVLFTTPT-----TPTDRMKAIVEA 214 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee~~~~~~~-~~~~-gi~~I~lisp~-----t~~eri~~i~~~ 214 (311)
..+... ..-+..+.++++|+||+++.- ...++...+... +... ++.++++=.|. .+.+-+.++++.
T Consensus 78 ~~~~t~--~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~ 155 (290)
T TIGR00683 78 GSVNLK--EAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKN 155 (290)
T ss_pred CCCCHH--HHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcC
Confidence 433221 123566778999999998831 112555555444 4555 67777654442 234566666542
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..++.+=. .+| +. +.+.+++... +.-|+ .|-. +.....+..|+||.+-|++
T Consensus 156 -pnv~giK~---s~~-------d~-~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~i~~~~ 207 (290)
T TIGR00683 156 -PKVLGVKF---TAG-------DF-YLLERLKKAYPNHLIW--AGFD--EMMLPAASLGVDGAIGSTF 207 (290)
T ss_pred -CCEEEEEe---CCC-------CH-HHHHHHHHhCCCCEEE--ECch--HHHHHHHHCCCCEEEecHH
Confidence 44444311 111 11 2345554433 44443 3332 4566666789999997755
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PLN02540 methylenetetrahydrofolate reductase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.3 Score=50.61 Aligned_cols=204 Identities=13% Similarity=0.213 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE-ecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF-TYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm-~Y~n~i~~~ 154 (311)
.+.+.+-++.|.+.|.+.|-+- + | +.|.+-+..+++++.++++..++.+.- +..| .-..
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT--~------g-----------AgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd-~n~~ 73 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDIT--W------G-----------AGGSTADLTLDIANRMQNMICVETMMHLTCTN-MPVE 73 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeC--C------C-----------CCCCcHHHHHHHHHHHHHhcCCCeeEEeeecC-CCHH
Confidence 4567778888888888888772 1 2 124455667788888888777775543 2222 2233
Q ss_pred CHHHHHHHHHHcCCcEEEe--cCCCh------------hhHHHHHHHHHHc-C-CCeEEEe-----CCC-----------
Q 021527 155 GVDNFMSTVRDIGIRGLVV--PDVPL------------EETESLQKEAMKN-K-IELVLFT-----TPT----------- 202 (311)
Q Consensus 155 g~~~fi~~~~~aGadGvii--pDlp~------------ee~~~~~~~~~~~-g-i~~I~li-----sp~----------- 202 (311)
.++..+..+.+.|+.-+++ .|-|. ..+.++.+.+++. | .--|-.. .|.
T Consensus 74 ~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~ 153 (565)
T PLN02540 74 KIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPE 153 (565)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCC
Confidence 5677888899999998876 35442 2256677777764 2 1112111 121
Q ss_pred ChHHHHHHHH-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEee-CCCCHHHHHHHHHcCCcEEEE
Q 021527 203 TPTDRMKAIV-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGF-GISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 203 t~~eri~~i~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGf-GIst~e~v~~v~~~GADGvIV 278 (311)
..+..+..+. +...|..|++|-. -.+ ....++++++|+. .++||+.|. .|.+..++..+.++ -|+-|
T Consensus 154 ~~~~dl~~Lk~KvdAGAdFiITQl-------fFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l--~Gi~I 224 (565)
T PLN02540 154 AYQKDLAYLKEKVDAGADLIITQL-------FYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGF--CKTKI 224 (565)
T ss_pred ChHHHHHHHHHHHHcCCCEEeecc-------ccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhc--cCCcC
Confidence 1111222221 2334666666422 223 3457889999886 479999996 67889999988886 59999
Q ss_pred hhHhhchhhhcCCc-----hhHHHHHHHHHHHHHh
Q 021527 279 GSAMVKLLGEAQSP-----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 279 GSaiv~~~~~~~~~-----~~~~~~~~~~~~~l~~ 308 (311)
-..+.+.++...+. +.+++-..+.+++|++
T Consensus 225 P~~i~~rLe~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 225 PAEITAALEPIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999764332 2466777788888765
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.41 Score=45.02 Aligned_cols=204 Identities=19% Similarity=0.217 Sum_probs=114.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCC--CCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVP--YSDPLA-DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~P--fsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
.+.+.+.++.|.+.|+.++-.|.- =+.|+. +|+- ++-++.+++++++.++|+.--.. +
T Consensus 40 ~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g---------------~~gl~~l~~~~~~~Gl~~~te~~-d--- 100 (266)
T PRK13398 40 EEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLG---------------EEGLKILKEVGDKYNLPVVTEVM-D--- 100 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcH---------------HHHHHHHHHHHHHcCCCEEEeeC-C---
Confidence 478999999999999998877721 122221 3321 45577888888889999877332 2
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC-hHHHH----HHHHHhCC-ceEEEEecCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT-PTDRM----KAIVEASE-GFVYLVSSIG 226 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t-~~eri----~~i~~~a~-gfiY~vs~~G 226 (311)
...++.+.+. +|-+-|+--..+.. .+..++.+.|. +|.+-+... +.+.+ +.+..... ..+.|. .|
T Consensus 101 ----~~~~~~l~~~-vd~~kIga~~~~n~-~LL~~~a~~gk-PV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~--rG 171 (266)
T PRK13398 101 ----TRDVEEVADY-ADMLQIGSRNMQNF-ELLKEVGKTKK-PILLKRGMSATLEEWLYAAEYIMSEGNENVVLCE--RG 171 (266)
T ss_pred ----hhhHHHHHHh-CCEEEECcccccCH-HHHHHHhcCCC-cEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEE--CC
Confidence 2334445555 78888874443333 35555667775 455555543 33322 22222222 233333 23
Q ss_pred c-cCCCCCCCchHHHHHHHHhhcCCCcEEEe--eCCCC----HHHHHHHHHcCCcEEEEhhHhhc--hhhhcCCchhHHH
Q 021527 227 V-TGARASISGHVQTLLREIKESSTKPVAVG--FGISK----PEHVQQVAGWGADGVIVGSAMVK--LLGEAQSPEEGLK 297 (311)
Q Consensus 227 ~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG--fGIst----~e~v~~v~~~GADGvIVGSaiv~--~~~~~~~~~~~~~ 297 (311)
+ |...-....-....+..+|+.++.||++. -++.. +.........||||++|=+.+.- .+.++. ..-..+
T Consensus 172 ~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~-~sl~p~ 250 (266)
T PRK13398 172 IRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEPEKALSDAR-QTLNFE 250 (266)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCccccCCchh-hcCCHH
Confidence 3 22111111112345777788788998872 23332 55667777899999998766543 221111 011256
Q ss_pred HHHHHHHHHHh
Q 021527 298 ELEKFAKSLKS 308 (311)
Q Consensus 298 ~~~~~~~~l~~ 308 (311)
++++++++++.
T Consensus 251 ~l~~l~~~i~~ 261 (266)
T PRK13398 251 EMKELVDELKP 261 (266)
T ss_pred HHHHHHHHHHH
Confidence 67777777664
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.31 Score=45.57 Aligned_cols=203 Identities=15% Similarity=0.209 Sum_probs=113.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCC---CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPY---SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~Pf---sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
.+.+.+.++.|.+.|+... .+..| +.|+. ..|.. ++.++++++++++.++|+.--.+ +
T Consensus 38 ~~~~~~~A~~lk~~~~k~~-r~~~~KpRtsp~s-------------~~g~g-~~gl~~l~~~~~~~Gl~~~t~~~-d--- 98 (260)
T TIGR01361 38 EEQIMETARFVKEAGAKIL-RGGAFKPRTSPYS-------------FQGLG-EEGLKLLRRAADEHGLPVVTEVM-D--- 98 (260)
T ss_pred HHHHHHHHHHHHHHHHHhc-cCceecCCCCCcc-------------ccccH-HHHHHHHHHHHHHhCCCEEEeeC-C---
Confidence 4678888888888877632 33333 23321 11222 56688999999999999877432 1
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC-hHHHH----HHHHHhCC-ceEEEEecCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT-PTDRM----KAIVEASE-GFVYLVSSIG 226 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t-~~eri----~~i~~~a~-gfiY~vs~~G 226 (311)
..-++.+.+. +|.+-|+-...... .+.+.+.+.|. +|.+-+... +.+.+ +.+.+... .++.+. .|
T Consensus 99 ----~~~~~~l~~~-~d~lkI~s~~~~n~-~LL~~~a~~gk-PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~--rG 169 (260)
T TIGR01361 99 ----PRDVEIVAEY-ADILQIGARNMQNF-ELLKEVGKQGK-PVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCE--RG 169 (260)
T ss_pred ----hhhHHHHHhh-CCEEEECcccccCH-HHHHHHhcCCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEE--CC
Confidence 2345555566 88888874433333 36666777785 455555544 33332 22222222 344443 24
Q ss_pred ccCC-CC-CCCchHHHHHHHHhhcCCCcEEE----eeCCC--CHHHHHHHHHcCCcEEEEhhHhhchhhhcCCc--hhHH
Q 021527 227 VTGA-RA-SISGHVQTLLREIKESSTKPVAV----GFGIS--KPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP--EEGL 296 (311)
Q Consensus 227 ~TG~-~~-~~~~~~~~~l~~vk~~~~~Pv~v----GfGIs--t~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~--~~~~ 296 (311)
++.. .. ....+ ...+..+|+.++.||++ ..|-+ .+.........||||+++=+.+.---.- .+. .-..
T Consensus 170 ~s~y~~~~~~~~d-l~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~-~D~~~sl~p 247 (260)
T TIGR01361 170 IRTFEKATRNTLD-LSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKAL-SDSKQQLTP 247 (260)
T ss_pred CCCCCCCCcCCcC-HHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccccC-CcchhcCCH
Confidence 4322 11 11222 34578888878899877 22211 0445556778999999887655431110 111 1126
Q ss_pred HHHHHHHHHHHh
Q 021527 297 KELEKFAKSLKS 308 (311)
Q Consensus 297 ~~~~~~~~~l~~ 308 (311)
++++.++++++.
T Consensus 248 ~~l~~lv~~i~~ 259 (260)
T TIGR01361 248 EEFKRLVKELRA 259 (260)
T ss_pred HHHHHHHHHHhh
Confidence 678888888764
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PLN02561 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=54.44 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=69.7
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhH----HHHHHHHHHcCCCeEEEeCCCCh-------HHH----HHHHHHhC----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEET----ESLQKEAMKNKIELVLFTTPTTP-------TDR----MKAIVEAS---- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~----~~~~~~~~~~gi~~I~lisp~t~-------~er----i~~i~~~a---- 215 (311)
-.+.+++.|++.+++..- -+.|. ..-...+.++|+.+|+-+.-+.. .+- ++...+.-
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~ 159 (253)
T PLN02561 80 SAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWA 159 (253)
T ss_pred CHHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 456788899999998631 12232 33345677889988877664311 111 22222111
Q ss_pred CceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHH-HHcCCcEEEEhhHh
Q 021527 216 EGFVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQV-AGWGADGVIVGSAM 282 (311)
Q Consensus 216 ~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v-~~~GADGvIVGSai 282 (311)
.-.|-|.+ ..| ||.. ..+.+..+..+.+|+. .++||+.|++|+ ++++.++ ...|.||+-||++=
T Consensus 160 ~iiIAYEPvWAIG-tG~~-as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~-~~N~~~l~~~~~iDG~LVG~AS 236 (253)
T PLN02561 160 NVVLAYEPVWAIG-TGKV-ATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVT-GANCKELAAQPDVDGFLVGGAS 236 (253)
T ss_pred ceEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcC-HHHHHHHhcCCCCCeEEEehHh
Confidence 11232322 223 5543 2233444444445431 158999999998 5776665 46679999999986
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 237 L~ 238 (253)
T PLN02561 237 LK 238 (253)
T ss_pred hH
Confidence 65
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0034 Score=57.63 Aligned_cols=47 Identities=32% Similarity=0.510 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCcE--EEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 239 QTLLREIKESSTKPV--AVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv--~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+++++++++.-.+|| +..+||.||.|+..+.+.|||||.|||.|.+.
T Consensus 195 ~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 195 YELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred HHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCC
Confidence 366777777666776 45789999999999999999999999999984
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.12 Score=50.17 Aligned_cols=185 Identities=22% Similarity=0.224 Sum_probs=102.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE----ec
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF----TY 147 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm----~Y 147 (311)
.++.++.+.+.+......++|.|-+.=-| | +.+......++++++- +|
T Consensus 44 ~~~~l~~~K~lv~~~l~~~asaILld~~y------G----------------------~~a~~~~~~~~GLil~~e~tg~ 95 (340)
T PRK12858 44 SYTDLVDFKLAVSEALTPYASAILLDPEY------G----------------------LPAAKVRDPNCGLLLSYEKTGY 95 (340)
T ss_pred chhhHHHHHHHHHHHHhhCCCEEEEcccc------C----------------------hhhhcccCCCCCeEEEeccccc
Confidence 35577888889999999999999985112 1 1111112245665554 12
Q ss_pred Cc-chhccC---HHHHHHHHHHcCCcEEEe-----cCCCh-------hhHHHHHHHHHHcCCCeEEE--eCCC-------
Q 021527 148 YN-PILKRG---VDNFMSTVRDIGIRGLVV-----PDVPL-------EETESLQKEAMKNKIELVLF--TTPT------- 202 (311)
Q Consensus 148 ~n-~i~~~g---~~~fi~~~~~aGadGvii-----pDlp~-------ee~~~~~~~~~~~gi~~I~l--isp~------- 202 (311)
-. ...+.. ..-.++.+++.|+|+|-+ ||-+. +...++.++|+++|+.++.- +.|.
T Consensus 96 d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~ 175 (340)
T PRK12858 96 DATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA 175 (340)
T ss_pred ccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc
Confidence 11 111100 112467899999998877 66552 12567889999999997764 3332
Q ss_pred -----ChHHHHHHHHHh-C---CceEEE-EecCC----ccCCCCC----CCchHHHHHHHHhhcCCCcEEE-eeCCCCHH
Q 021527 203 -----TPTDRMKAIVEA-S---EGFVYL-VSSIG----VTGARAS----ISGHVQTLLREIKESSTKPVAV-GFGISKPE 263 (311)
Q Consensus 203 -----t~~eri~~i~~~-a---~gfiY~-vs~~G----~TG~~~~----~~~~~~~~l~~vk~~~~~Pv~v-GfGIst~e 263 (311)
..++.+...++. + -|...+ +...+ +-|...+ ...+..+.++++.+.+++|+++ |+|++ .+
T Consensus 176 ~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~~-~~ 254 (340)
T PRK12858 176 EEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGVS-PE 254 (340)
T ss_pred ccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCCC-HH
Confidence 112222222221 2 343322 32111 1111000 1122235677777778999666 88885 44
Q ss_pred ----HHHHHHHcCC--cEEEEhhHhhch
Q 021527 264 ----HVQQVAGWGA--DGVIVGSAMVKL 285 (311)
Q Consensus 264 ----~v~~v~~~GA--DGvIVGSaiv~~ 285 (311)
.++...+.|| .||.+|=++-+.
T Consensus 255 ~f~~~l~~A~~aGa~f~Gvl~GRniwq~ 282 (340)
T PRK12858 255 LFRRTLEFACEAGADFSGVLCGRATWQD 282 (340)
T ss_pred HHHHHHHHHHHcCCCccchhhhHHHHhh
Confidence 4555678999 999999666553
|
|
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.49 Score=44.91 Aligned_cols=204 Identities=21% Similarity=0.281 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM 130 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~ 130 (311)
.+.++..++.+ -+ +|-+- --+++.+.-++++.++..+++|-=. ..|- +....| .+.+..+
T Consensus 7 ~~ll~~Ake~~-yA-vpAfN--~~nlE~~~AileaA~e~~sPvIiq~-------S~g~-------~~y~gg--~~~~~~~ 66 (286)
T COG0191 7 KELLDKAKENG-YA-VPAFN--INNLETLQAILEAAEEEKSPVIIQF-------SEGA-------AKYAGG--ADSLAHM 66 (286)
T ss_pred HHHHHHHHHcC-Cc-eeeee--ecCHHHHHHHHHHHHHhCCCEEEEe-------cccH-------HHHhch--HHHHHHH
Confidence 56666665443 33 33331 3467899999999999999887543 1230 111122 3455678
Q ss_pred HHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE----E--
Q 021527 131 LKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL----F-- 198 (311)
Q Consensus 131 i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~----l-- 198 (311)
++.+.++.++||++-. .+..-.+.+..+.+.|...+.+ ..+|+|| ..++.+.|.+.|+.+=. +
T Consensus 67 v~~~a~~~~vPV~lHl-----DHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG 141 (286)
T COG0191 67 VKALAEKYGVPVALHL-----DHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGG 141 (286)
T ss_pred HHHHHHHCCCCEEEEC-----CCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccccC
Confidence 8888888889999963 1222456788899999999877 4678887 67889999999874321 1
Q ss_pred --------eC--CCChHHHHHHHHHhCCceEEE----EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCCH
Q 021527 199 --------TT--PTTPTDRMKAIVEASEGFVYL----VSSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISKP 262 (311)
Q Consensus 199 --------is--p~t~~eri~~i~~~a~gfiY~----vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst~ 262 (311)
.. --|.++...+..+.. |...+ .+..|..-. +.+.--.+.|+++++.+++|++. |.||. .
T Consensus 142 ~Edg~~~~~~~~~~tdp~ea~~fv~~t-giD~LA~aiGn~HG~Yk~--~~p~L~~~~L~~i~~~~~~PlVlHGgSGip-~ 217 (286)
T COG0191 142 EEDGVVLYTDPADLTDPEEALEFVERT-GIDALAAAIGNVHGVYKP--GNPKLDFDRLKEIQEAVSLPLVLHGGSGIP-D 217 (286)
T ss_pred ccCCcccccchhhhCCHHHHHHHHhcc-CcceeeeeccccccCCCC--CCCCCCHHHHHHHHHHhCCCEEEeCCCCCC-H
Confidence 01 012234444444433 33333 233343211 11212236799999999999755 77886 6
Q ss_pred HHHHHHHHcCCcEEEEhhHhh
Q 021527 263 EHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv 283 (311)
+++++..++|.-=+=|.|-+-
T Consensus 218 ~eI~~aI~~GV~KvNi~Td~~ 238 (286)
T COG0191 218 EEIREAIKLGVAKVNIDTDLQ 238 (286)
T ss_pred HHHHHHHHhCceEEeeCcHHH
Confidence 999999999988887877543
|
|
| >PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.021 Score=55.76 Aligned_cols=123 Identities=18% Similarity=0.246 Sum_probs=69.6
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHH----HHHHHHHHcCCCeEEEeCCCChHHH--------HHHHHH-h-------
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETE----SLQKEAMKNKIELVLFTTPTTPTDR--------MKAIVE-A------- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~----~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~~-~------- 214 (311)
-...++++|++.+++.. ..+.|.. .-...+.++|+.+|+-+.-+ .++| +....+ .
T Consensus 87 S~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~-~eer~~g~~~~v~~~Ql~~~l~~v~~~ 165 (355)
T PRK14905 87 SPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGET-LEQKNYNISDEVLRTQLKIGLHGVSAE 165 (355)
T ss_pred CHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCc-HHHHhccCHHHHHHHHHHHHHccCCHh
Confidence 45678899999999863 1223332 33456788899888766643 2222 111111 0
Q ss_pred --CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHH-HHcCCcEEEEhh
Q 021527 215 --SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQV-AGWGADGVIVGS 280 (311)
Q Consensus 215 --a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v-~~~GADGvIVGS 280 (311)
..-+|-|.+ ..| ||.+...++...+..+.+|+. .+++|++|++|+ ++++.++ ...+.||+-||+
T Consensus 166 ~~~~~vIAYEPvWAIG-Tgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~-~~N~~~l~~~~~iDG~LVG~ 243 (355)
T PRK14905 166 QLPHLFIAYEPVWAIG-EGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVN-LENANELIMKPHIDGLFIGR 243 (355)
T ss_pred hcCceEEEECChHHhC-CCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCC-HHHHHHHhcCCCCCEEEech
Confidence 111232322 223 443333333334444444432 147999999998 5666665 456689999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+-.+
T Consensus 244 asl~ 247 (355)
T PRK14905 244 SAWD 247 (355)
T ss_pred hhcc
Confidence 9886
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.18 Score=47.56 Aligned_cols=178 Identities=14% Similarity=0.199 Sum_probs=103.7
Q ss_pred eCCCCChhhHHHHHHHHHHC-CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEe
Q 021527 70 TAGDPDLSTTAEALKLLDSC-GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFT 146 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~-GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~ 146 (311)
--|.-|.+.+.+.++.+.+. |+|.|-++--..+ ++. .+.++-.++++...+. -++||+.-.
T Consensus 14 ~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE----~~~------------Lt~~Er~~~~~~~~~~~~~~~~viagv 77 (288)
T cd00954 14 ENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGE----GFL------------LSVEERKQIAEIVAEAAKGKVTLIAHV 77 (288)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcC----ccc------------CCHHHHHHHHHHHHHHhCCCCeEEecc
Confidence 34667788999999999999 9999988522211 111 3445555566555443 357887754
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEe--cCC---ChhhHHH-HHHHHHHc-CCCeEEEeCCC-----ChHHHHHHHHHh
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVV--PDV---PLEETES-LQKEAMKN-KIELVLFTTPT-----TPTDRMKAIVEA 214 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGvii--pDl---p~ee~~~-~~~~~~~~-gi~~I~lisp~-----t~~eri~~i~~~ 214 (311)
-.+.. ...-+..+.+.++|+|++++ |-. ..++..+ |...++.. ++.++++=.|. .+.+-+.++++
T Consensus 78 ~~~~~--~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~- 154 (288)
T cd00954 78 GSLNL--KESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE- 154 (288)
T ss_pred CCCCH--HHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc-
Confidence 32211 11245677889999999986 221 1245555 45556667 78877664443 23466666654
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
-..++.+=. .+| +. ..+.++++.. +..++.|.. +.+...+..|+||.+.|.+
T Consensus 155 ~pnivgiK~---s~~-------d~-~~~~~~~~~~~~~~~v~~G~d----~~~~~~~~~G~~G~i~~~~ 208 (288)
T cd00954 155 IPNVIGVKF---TAT-------DL-YDLERIRAASPEDKLVLNGFD----EMLLSALALGADGAIGSTY 208 (288)
T ss_pred CCCEEEEEe---CCC-------CH-HHHHHHHHhCCCCcEEEEech----HHHHHHHHcCCCEEEeChh
Confidence 334443311 011 12 2344444332 456666653 3455666799999998865
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.049 Score=56.38 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=91.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-C---CCcEEEEecCcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-M---SCPIALFTYYNP 150 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~---~iPiilm~Y~n~ 150 (311)
+.++-+++++.|.+.|+|.||+|+|-+.| .|- +.++++.+. . ++.+..++-
T Consensus 46 s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s~-~D~---------------------e~v~~i~~~~l~~~~~~i~al~~--- 100 (564)
T TIGR00970 46 SPARKRRYFDLLVRIGFKEIEVGFPSASQ-TDF---------------------DFVREIIEQGAIPDDVTIQVLTQ--- 100 (564)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCH-HHH---------------------HHHHHHHHhcCCCCCcEEEEEcC---
Confidence 34778999999999999999999998764 332 234444322 1 222333321
Q ss_pred hhccCHHHHHHHHHHc--CCc--EEEe--c--C--------CChhh----HHHHHHHHHHcCCC---------eEEEeCC
Q 021527 151 ILKRGVDNFMSTVRDI--GIR--GLVV--P--D--------VPLEE----TESLQKEAMKNKIE---------LVLFTTP 201 (311)
Q Consensus 151 i~~~g~~~fi~~~~~a--Gad--Gvii--p--D--------lp~ee----~~~~~~~~~~~gi~---------~I~lisp 201 (311)
.....++.+.++ |++ .|.+ + | ...+| ..+..+.++.++.. .+.+ ++
T Consensus 101 ----~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f-~~ 175 (564)
T TIGR00970 101 ----SREELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEY-SP 175 (564)
T ss_pred ----CchhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEE-ec
Confidence 123344555554 332 3333 2 2 12233 33445557777753 1333 33
Q ss_pred C----ChHHHHHHHHHhC--Cce-----EEEEecCCccCCCCCCCchHHHHHHHHhhcC----CCcEEE----eeCCCCH
Q 021527 202 T----TPTDRMKAIVEAS--EGF-----VYLVSSIGVTGARASISGHVQTLLREIKESS----TKPVAV----GFGISKP 262 (311)
Q Consensus 202 ~----t~~eri~~i~~~a--~gf-----iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~----~~Pv~v----GfGIst~ 262 (311)
. ++.+++.++.+.+ .|. .-.+..--++|. ..|..+.++++.+++.. ++|+-+ .+|.-.+
T Consensus 176 Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~--a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvA 253 (564)
T TIGR00970 176 ESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEM--TTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVA 253 (564)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCc--cCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHH
Confidence 3 5566665555542 121 112233345564 34667788899887753 345554 3444433
Q ss_pred HHHHHHHHcCCcEEE
Q 021527 263 EHVQQVAGWGADGVI 277 (311)
Q Consensus 263 e~v~~v~~~GADGvI 277 (311)
+.-..+++||+-|=
T Consensus 254 -NslaAv~aGa~~v~ 267 (564)
T TIGR00970 254 -AAELGFLAGADRIE 267 (564)
T ss_pred -HHHHHHHhCCCEEE
Confidence 34455679998874
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >PRK03739 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.086 Score=54.50 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-C---CCcEEEEecCcch
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-M---SCPIALFTYYNPI 151 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~---~iPiilm~Y~n~i 151 (311)
.++-+++++.|.+.|+|.||+|+|-+.| + -++.++++.+. . +.-+..++
T Consensus 51 ~~~Ki~ia~~L~~~GV~~IE~GfP~~s~---~-------------------e~e~v~~i~~~~~~~~~~~i~~l~----- 103 (552)
T PRK03739 51 PERKLRMFDLLVKIGFKEIEVGFPSASQ---T-------------------DFDFVRELIEEGLIPDDVTIQVLT----- 103 (552)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCh---H-------------------HHHHHHHHHHhcCCCCCCEEEEEe-----
Confidence 4778899999999999999999877443 2 13455555332 2 22233332
Q ss_pred hccCHHHHHHHHHHc--CCc--EEEe--c--CC--------Chhh----HHHHHHHHHHcCCCe-----EEEeCCC----
Q 021527 152 LKRGVDNFMSTVRDI--GIR--GLVV--P--DV--------PLEE----TESLQKEAMKNKIEL-----VLFTTPT---- 202 (311)
Q Consensus 152 ~~~g~~~fi~~~~~a--Gad--Gvii--p--Dl--------p~ee----~~~~~~~~~~~gi~~-----I~lisp~---- 202 (311)
......++.+.++ |++ .+.+ + |+ ..+| ..+....++.+|... -+-.++.
T Consensus 104 --r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR 181 (552)
T PRK03739 104 --QAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTG 181 (552)
T ss_pred --ccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCC
Confidence 2234556666655 332 3433 2 21 1233 344556667777322 1222434
Q ss_pred ChHHHHHHHHHhC-----Cc---eEEEEecCCccCCCCCCCchHHHHHHHHhhcC----CCcEEE----eeCCCCHHHHH
Q 021527 203 TPTDRMKAIVEAS-----EG---FVYLVSSIGVTGARASISGHVQTLLREIKESS----TKPVAV----GFGISKPEHVQ 266 (311)
Q Consensus 203 t~~eri~~i~~~a-----~g---fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~----~~Pv~v----GfGIst~e~v~ 266 (311)
++.+.+.++.+.+ .| ... +...-++|. ..|..+.++++.+++.. ++++-+ .+|.-.++ .-
T Consensus 182 ~d~~~l~~~~~~a~~~~~ag~~~~~~-i~l~DTvG~--~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvAN-sl 257 (552)
T PRK03739 182 TELDFALEVCDAVIDVWQPTPERKVI-LNLPATVEM--STPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAA-AE 257 (552)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCceeE-EEeccCCcC--cCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHH-HH
Confidence 5566665555542 22 111 222235554 34666778888888765 456655 44555444 44
Q ss_pred HHHHcCCcEEEEhhHhhchhhh
Q 021527 267 QVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 267 ~v~~~GADGvIVGSaiv~~~~~ 288 (311)
..+++||+.|= .-+..++|
T Consensus 258 aAv~aGa~~v~---gtvnG~GE 276 (552)
T PRK03739 258 LALMAGADRVE---GCLFGNGE 276 (552)
T ss_pred HHHHhCCCEEE---eeCCcCcc
Confidence 55679998874 33344444
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.15 Score=47.10 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=76.1
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc-CCC--CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG-VPY--SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM 138 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG-~Pf--sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~ 138 (311)
...++.=+.-||-+.+...+.++.+.++|++.|.+- --+ .---..|.. =.+.++..+-++..++..
T Consensus 69 ~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~-----------~~~~ee~~~ki~aa~~a~ 137 (243)
T cd00377 69 DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKV-----------LVPIEEFVAKIKAARDAR 137 (243)
T ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCe-----------ecCHHHHHHHHHHHHHHH
Confidence 344666666788888899999999999999999992 000 000000100 024444455555554432
Q ss_pred C--CcEEEEecCcchhc--cCHHHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC
Q 021527 139 S--CPIALFTYYNPILK--RGVDNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT 203 (311)
Q Consensus 139 ~--iPiilm~Y~n~i~~--~g~~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t 203 (311)
+ .++.+..-.+.+.. .++++-+++ +.++|+|++.++-.. ..++++..+++.++.++.+.+|..
T Consensus 138 ~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--~~~~~~~~~~~~~~Pl~~~~~~~~ 207 (243)
T cd00377 138 DDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK--DPEEIRAFAEAPDVPLNVNMTPGG 207 (243)
T ss_pred hccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC--CHHHHHHHHhcCCCCEEEEecCCC
Confidence 2 24444433233322 567766654 578999999987432 334555566666777777776654
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.068 Score=46.96 Aligned_cols=95 Identities=23% Similarity=0.358 Sum_probs=66.5
Q ss_pred HHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE--EeCCCChHHH-HHHHHHhCCceEEEEecCCccCCCCCCCchHHH
Q 021527 164 RDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL--FTTPTTPTDR-MKAIVEASEGFVYLVSSIGVTGARASISGHVQT 240 (311)
Q Consensus 164 ~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~--lisp~t~~er-i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~ 240 (311)
.....||+|-. -......++++|+..|+ |+-.+..-++ ++.+.+....|+=+.+ | + +.+
T Consensus 73 ~~~~pdGIIST------k~~~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLP--G-------v---~Pk 134 (181)
T COG1954 73 EVIKPDGIIST------KSNVIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVLP--G-------V---MPK 134 (181)
T ss_pred HhccCCeeEEc------cHHHHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEcC--c-------c---cHH
Confidence 33458997554 22356678999997663 3333333344 5556556677765543 2 1 236
Q ss_pred HHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 241 ~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
.++++.+.++.||+.|+=|.+.|++.+++++||-.|
T Consensus 135 vi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~av 170 (181)
T COG1954 135 VIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAV 170 (181)
T ss_pred HHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEE
Confidence 799999999999999999999999999999988666
|
|
| >PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.039 Score=49.87 Aligned_cols=192 Identities=17% Similarity=0.255 Sum_probs=107.0
Q ss_pred EEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 66 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 66 i~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
..|++...| +.++.+...|+|.+-++..-+-|..+ +...|. ++.+.+..+...+ .....+++-
T Consensus 3 ~l~vp~~~~------~~~~~a~~~g~D~vilDlEd~~~~~~-----K~~ar~-----~~~~~~~~~~~~~-~~~~~~~VR 65 (221)
T PF03328_consen 3 GLFVPANSP------KMLEKAAASGADFVILDLEDGVPPDE-----KDEARE-----DLAEALRSIRAAR-AAGSEIIVR 65 (221)
T ss_dssp EEEEESTSH------HHHHHHHTTCSSEEEEESSTTSSGGG-----HHHHHH-----HHHHHHHHHHHHT-TSSSEEEEE
T ss_pred EEEEeCCCH------HHHHHHHhcCCCEEEEeCcccCCccc-----chhhHH-----HHHHHHHhhcccc-cccccceec
Confidence 457777776 77888889999999998655443332 222221 2223333333322 233455554
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHc---------CCCeEEEeCCCChH--HHHHHHHH
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKN---------KIELVLFTTPTTPT--DRMKAIVE 213 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~---------gi~~I~lisp~t~~--eri~~i~~ 213 (311)
. |........+.++ +.+.|++||++|..- .++...+.+.++.. .+..+.++ .|+. +.+.+|+
T Consensus 66 v--n~~~~~~~~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~I--ET~~gv~~~~eI~- 139 (221)
T PF03328_consen 66 V--NSLDSPHIERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMI--ETPEGVENLEEIA- 139 (221)
T ss_dssp ---SSTTCHHHHHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE---SHHHHHTHHHHH-
T ss_pred C--CCCCcchhhhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEee--ccHHHHhCHHhhc-
Confidence 3 4433323345555 899999999999763 45666677766554 24455555 4443 6678887
Q ss_pred hCCceE--EEE-----ecCCccCCCCCCCchHHHHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 214 ASEGFV--YLV-----SSIGVTGARASISGHVQTLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 214 ~a~gfi--Y~v-----s~~G~TG~~~~~~~~~~~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
...++. ++. ...|.++.. ..+.+.+..+++-. ..++|. +|.=..+.++...+.+.|...+..|.-..
T Consensus 140 a~~~v~~l~~G~~Dls~~lG~~~~~--~~~~~~~a~~~v~~aa~a~g~~~-i~~~~~~~~d~~~~~~~~~~~~~~G~dg~ 216 (221)
T PF03328_consen 140 AVPGVDGLFFGPADLSASLGIPGQP--DHPEVLEARSKVVLAARAAGKPA-IDGVFPDFEDAEGLEAEGFRARALGFDGK 216 (221)
T ss_dssp TSTTEEEEEE-HHHHHHHTTTTTST--TSHHHHHHHHHHHHHHHHTTEEE-EEEEESSSSHHHHHHHHHHHCCEEEEHHC
T ss_pred ccCCeeEEEeCcHHHHhhhccCCCC--cchHHHHHHHHHHHHHHHcCCCe-EEEeeCCHHHHHHHHHHHHHHHHHccccc
Confidence 455554 332 245655532 23344444444433 236755 34433456778888877777777775443
|
1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B .... |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.84 Score=44.79 Aligned_cols=207 Identities=16% Similarity=0.183 Sum_probs=116.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+.+.+.++.|.+.|+.++-=| .|. |-... . + -.|... +-+.++++.+++.++|++--.+ +
T Consensus 131 ~~~~~~~A~~lk~~g~~~~r~~-~~k-pRtsp-~----~----f~g~~~-e~l~~L~~~~~~~Gl~~~t~v~-d------ 191 (360)
T PRK12595 131 YEQVEAVAKALKAKGLKLLRGG-AFK-PRTSP-Y----D----FQGLGV-EGLKILKQVADEYGLAVISEIV-N------ 191 (360)
T ss_pred HHHHHHHHHHHHHcCCcEEEcc-ccC-CCCCC-c----c----ccCCCH-HHHHHHHHHHHHcCCCEEEeeC-C------
Confidence 4789999999999999877643 442 22111 0 0 134555 5577888888899999877432 2
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC--ChHHHH---HHHHHhCC-ceEEEEecCCccC
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT--TPTDRM---KAIVEASE-GFVYLVSSIGVTG 229 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~--t~~eri---~~i~~~a~-gfiY~vs~~G~TG 229 (311)
..-++.+.+. +|.+-|+-..... ..+...+.+.|. +|.+-+.. +.+|.. +.+.+... .++.|- .|++.
T Consensus 192 -~~~~~~l~~~-vd~lkI~s~~~~n-~~LL~~~a~~gk-PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~e--rg~s~ 265 (360)
T PRK12595 192 -PADVEVALDY-VDVIQIGARNMQN-FELLKAAGRVNK-PVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCE--RGIRT 265 (360)
T ss_pred -HHHHHHHHHh-CCeEEECcccccC-HHHHHHHHccCC-cEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEEC--CccCC
Confidence 3456666777 8998888443333 346666677785 46665554 443332 22222222 344332 24443
Q ss_pred CCCC-CCchHHHHHHHHhhcCCCcEEEeeCCCC------HHHHHHHHHcCCcEEEEhhHhhchhhhcCCch--hHHHHHH
Q 021527 230 ARAS-ISGHVQTLLREIKESSTKPVAVGFGISK------PEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE--EGLKELE 300 (311)
Q Consensus 230 ~~~~-~~~~~~~~l~~vk~~~~~Pv~vGfGIst------~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~--~~~~~~~ 300 (311)
..+. .+.-....+..+|+.+++||+++..=+. +.........||||.+|=..+-+-.. ..+.. -..++++
T Consensus 266 yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~dp~~a-~~D~~~sl~p~el~ 344 (360)
T PRK12595 266 YEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHPDPAVA-LSDSAQQMDIPEFD 344 (360)
T ss_pred CCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecCCCCCC-CCchhhhCCHHHHH
Confidence 2211 1111234588888888999877432211 12345567899999999877733221 11111 1145666
Q ss_pred HHHHHHHh
Q 021527 301 KFAKSLKS 308 (311)
Q Consensus 301 ~~~~~l~~ 308 (311)
+++++++.
T Consensus 345 ~l~~~i~~ 352 (360)
T PRK12595 345 RFLDELKP 352 (360)
T ss_pred HHHHHHHH
Confidence 66666553
|
|
| >TIGR00419 tim triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.029 Score=50.76 Aligned_cols=121 Identities=23% Similarity=0.297 Sum_probs=68.2
Q ss_pred HHHHHHHcCCcEEEecCC--Chhh--HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe--cCCccCCCC
Q 021527 159 FMSTVRDIGIRGLVVPDV--PLEE--TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS--SIGVTGARA 232 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--p~ee--~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs--~~G~TG~~~ 232 (311)
-.+.+++.|++++|+..- .+.| ...-.+.+.++|+.+|+-+ ....+.+. ......-.+-|.+ ..| ||...
T Consensus 73 S~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi--~~v~~q~~-~~~~~~~vIAYEPvWAIG-tG~~a 148 (205)
T TIGR00419 73 SAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCT--NNVLTTAA-AAALEPDVVAVEPPELIG-TGIPV 148 (205)
T ss_pred CHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEE--HHHHHHHH-hhhhcCeEEEECCHHHhC-CCCCC
Confidence 456788899999988521 1222 2334556788999888766 11112221 1112223333322 223 55432
Q ss_pred CCCchHH---HHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 233 SISGHVQ---TLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 233 ~~~~~~~---~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+.+ +.++..++. .+++|++|++|+..+....+...+.||+-||++..+
T Consensus 149 -s~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~ 203 (205)
T TIGR00419 149 -SPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLK 203 (205)
T ss_pred -CHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 223333 334433332 258999999998544445556778999999998765
|
Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.093 Score=47.68 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=24.6
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
.+||-+-+||+|.+++.++.++|||=+
T Consensus 175 ~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 175 TIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 689999999999999999999998754
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.048 Score=51.55 Aligned_cols=133 Identities=16% Similarity=0.098 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCC----CCCCChHHHHHHHHHHHHcCCC
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYS----DPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pfs----DP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
..+.+.++++++.-...+..=+ .|+.+++.+.++.++++|+|.|.+..-+. |....-|.... ...|.+
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKi---~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~-----~~gg~s 214 (300)
T TIGR01037 143 ELSADVVKAVKDKTDVPVFAKL---SPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILAN-----KTGGLS 214 (300)
T ss_pred HHHHHHHHHHHHhcCCCEEEEC---CCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCC-----CCcccc
Confidence 3466777777655333333333 25667889999999999999999832111 10000000000 001111
Q ss_pred HH----HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-------CCChhhHHHHHHHHHHcC
Q 021527 124 FN----AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-------DVPLEETESLQKEAMKNK 192 (311)
Q Consensus 124 ~~----~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-------Dlp~ee~~~~~~~~~~~g 192 (311)
-. -.++.+.++++.+++||+..+-.. . .+.+.++.++|+|+|.+. ++.-+-..++.+.+.++|
T Consensus 215 g~~~~~~~l~~v~~i~~~~~ipvi~~GGI~-----s-~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 215 GPAIKPIALRMVYDVYKMVDIPIIGVGGIT-----S-FEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred chhhhHHHHHHHHHHHhcCCCCEEEECCCC-----C-HHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 11 125688889988899999865221 1 234555556899998883 333222445666667777
Q ss_pred CC
Q 021527 193 IE 194 (311)
Q Consensus 193 i~ 194 (311)
..
T Consensus 289 ~~ 290 (300)
T TIGR01037 289 FT 290 (300)
T ss_pred CC
Confidence 54
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.027 Score=54.84 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+.++++|+.+++||++- ||.++++++.+.+.|+|+++|...--+.+
T Consensus 202 ~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~~G~d~I~vsnhgG~~~ 248 (344)
T cd02922 202 WDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAEYGVDGIVLSNHGGRQL 248 (344)
T ss_pred HHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHHcCCCEEEEECCCcccC
Confidence 467999999999999888 78889999999999999999976443333
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.07 Score=50.47 Aligned_cols=194 Identities=14% Similarity=0.129 Sum_probs=110.5
Q ss_pred HHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 56 RLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 56 ~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
.++++...-.++|+++-+=+.....+++..+.+.|++-|-+ | ||...|..-+.. +..+. ...++++.
T Consensus 53 ~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~G----D~p~~~~~~~~~-----~~~f~--~a~~Li~~ 121 (281)
T TIGR00677 53 RAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRG----DPPHIGDDWTEV-----EGGFQ--YAVDLVKY 121 (281)
T ss_pred HHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECC----CCCCCCCCCCCC-----CCCCc--CHHHHHHH
Confidence 33334345679999999999999999999999999998755 4 332222100000 00011 12456666
Q ss_pred hhccC--CCcEEEEecCcc-hhccCHHH---HHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCC--CeEEEeCCCC
Q 021527 134 VVPQM--SCPIALFTYYNP-ILKRGVDN---FMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKI--ELVLFTTPTT 203 (311)
Q Consensus 134 ir~~~--~iPiilm~Y~n~-i~~~g~~~---fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi--~~I~lisp~t 203 (311)
+++.. +.-+.+-+|-+. ......+. .++.=.++|+|- ++.-+-+ +...+|.+.|++.|+ ..++-+.|-+
T Consensus 122 i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f-~iTQ~~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~ 200 (281)
T TIGR00677 122 IRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADF-IITQLFYDVDNFLKFVNDCRAIGIDCPIVPGIMPIN 200 (281)
T ss_pred HHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCE-eeccceecHHHHHHHHHHHHHcCCCCCEEeeccccC
Confidence 66532 244666666421 11112333 222223699995 4543333 446788999998866 4555666766
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcE---EEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPV---AVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv---~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
+...+..+.+ ++|. .+|..+ ++++++.-+-+- ..|.-+. .++++++++.|++|+=+-|
T Consensus 201 s~~~~~~~~~-------------~~Gi--~vP~~l---~~~l~~~~~~~~~~~~~gi~~a-~~~~~~l~~~G~~giH~~t 261 (281)
T TIGR00677 201 NYASFLRRAK-------------WSKT--KIPQEI---MSRLEPIKDDDEAVRDYGIELI-VEMCQKLLASGIKGLHFYT 261 (281)
T ss_pred CHHHHHHHHh-------------cCCC--CCCHHH---HHHHHhccCCHHHHHHHHHHHH-HHHHHHHHHCCCCeeEEec
Confidence 6555444422 2333 466644 445544322221 1345554 6899999999999995544
|
This protein is an FAD-containing flavoprotein. |
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.41 Score=46.52 Aligned_cols=185 Identities=13% Similarity=0.149 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.++..+.++.+.+.|++-+-+|.-+.+|... .++.+.++++.+|+ ..+++.+ + |... .
T Consensus 78 ~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~----------------~~e~i~~~i~~ik~-~~i~v~~-s--~G~l--s 135 (345)
T PRK15108 78 VEQVLESARKAKAAGSTRFCMGAAWKNPHER----------------DMPYLEQMVQGVKA-MGLETCM-T--LGTL--S 135 (345)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCCCCcc----------------hHHHHHHHHHHHHh-CCCEEEE-e--CCcC--C
Confidence 4678888888889999999887555455221 23455677777774 4555432 1 2211 1
Q ss_pred HHHHHHHHHHcCCcEEEe-------------cCCChhhHHHHHHHHHHcCCCeEE--Ee-CCCChHHHHHHHHHh-----
Q 021527 156 VDNFMSTVRDIGIRGLVV-------------PDVPLEETESLQKEAMKNKIELVL--FT-TPTTPTDRMKAIVEA----- 214 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvii-------------pDlp~ee~~~~~~~~~~~gi~~I~--li-sp~t~~eri~~i~~~----- 214 (311)
++.++.++++|+|.+.+ +.-.+++..+..+.+++.|+..-. ++ --.+.++|++.+...
T Consensus 136 -~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~ 214 (345)
T PRK15108 136 -ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPT 214 (345)
T ss_pred -HHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccC
Confidence 67888999999997766 112235566677778888885331 11 234667776555432
Q ss_pred CCceEEEEecCCccCCCC-CCC-chHHHHHHH---HhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 215 SEGFVYLVSSIGVTGARA-SIS-GHVQTLLRE---IKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~-~~~-~~~~~~l~~---vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
..+++-+--.....|+.- ..+ .+..+.++. .|=.. .+++..|.....++.....+.+|||++++|-.++
T Consensus 215 ~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~l 291 (345)
T PRK15108 215 PPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLL 291 (345)
T ss_pred CCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccc
Confidence 223554422222233321 111 122344443 33333 3567777755556767888899999999998643
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=57.95 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+.|+.+|+.++.|+++. ||.++|+++++.++|+|||+|...=-+.+
T Consensus 226 ~~i~~ir~~~~~pviiK-gV~~~eda~~a~~~G~d~I~VSnhGGrql 271 (361)
T cd04736 226 QDLRWLRDLWPHKLLVK-GIVTAEDAKRCIELGADGVILSNHGGRQL 271 (361)
T ss_pred HHHHHHHHhCCCCEEEe-cCCCHHHHHHHHHCCcCEEEECCCCcCCC
Confidence 57999999999999777 79999999999999999999974444444
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.2 Score=47.71 Aligned_cols=184 Identities=16% Similarity=0.203 Sum_probs=111.7
Q ss_pred HHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 55 TRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 55 ~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
..++++....-|+++++=+=+.....+.+..+.+.|++-|-+ |-|.+++ |.+. ..--++++.++
T Consensus 75 ~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~--~~~~------------~~a~dLv~li~ 140 (296)
T PRK09432 75 KGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPPGS--GKPE------------MYASDLVTLLK 140 (296)
T ss_pred HHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCC--CCCC------------cCHHHHHHHHH
Confidence 344344345679999999989999999999999999998877 5333322 2221 11124445555
Q ss_pred HhhccCCCcEEEEecCc--chhccCHHH---HHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcC--CCeEEEeCCCC
Q 021527 133 EVVPQMSCPIALFTYYN--PILKRGVDN---FMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNK--IELVLFTTPTT 203 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n--~i~~~g~~~---fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~g--i~~I~lisp~t 203 (311)
+.. ... +.+-+|-. |-. ...+. +++.=.++|++. ++.-+= .+...+|.+.+++.| +..++-+.|-+
T Consensus 141 ~~~-~~~--i~va~yPeghp~~-~~~~~dl~~Lk~K~~aGA~~-~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~ 215 (296)
T PRK09432 141 SVA-DFD--ISVAAYPEVHPEA-KSAQADLINLKRKVDAGANR-AITQFFFDVESYLRFRDRCVSAGIDVEIVPGILPVS 215 (296)
T ss_pred HhC-CCc--cceeeCCCCCCCC-CCHHHHHHHHHHHHHcCCCe-eecccccchHHHHHHHHHHHHcCCCCCEEeeccccC
Confidence 442 233 44555532 221 12222 334445699995 454322 345778999999998 46677788888
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc---EEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP---VAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P---v~vGfGIst~e~v~~v~~~GADGv 276 (311)
+..++..+.+ ..|. .+|.. +++++.+.-+-+ ...|.-+. .|+++.+.+.|++|+
T Consensus 216 s~~~~~~~~~-------------~~Gv--~vP~~---l~~~l~~~~d~~~~~~~~Gi~~a-~e~i~~L~~~gv~Gv 272 (296)
T PRK09432 216 NFKQLKKFAD-------------MTNV--RIPAW---MAKMFDGLDDDAETRKLVGASIA-MDMVKILSREGVKDF 272 (296)
T ss_pred CHHHHHHHHH-------------ccCC--CCCHH---HHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHCCCCEE
Confidence 8777766633 2222 45654 455554443332 11344444 699999999999999
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.043 Score=52.87 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC----H
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN----F 124 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~----~ 124 (311)
++.+....+++.-+..++.=+. |+.+...++++.+.++|+|.|.+-+-+..+..|-.... .-...|.+ .
T Consensus 150 ~~~eiv~~v~~~~~iPv~vKl~---p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~----~~~~~glSG~~~~ 222 (325)
T cd04739 150 RYLDILRAVKSAVTIPVAVKLS---PFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLE----VVPNLLLSSPAEI 222 (325)
T ss_pred HHHHHHHHHHhccCCCEEEEcC---CCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccc----eecCCCcCCccch
Confidence 4566677776654555655554 55567889999999999999999665433322200000 00011111 1
Q ss_pred HHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh--------hhHHHHHHHHHHcCCC
Q 021527 125 NAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--------EETESLQKEAMKNKIE 194 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--------ee~~~~~~~~~~~gi~ 194 (311)
...++++.++++.+++||+..|=.. ..++ +.++..+|||+|-+.-.-+ +=..++.+.+.++|++
T Consensus 223 ~~al~~v~~v~~~~~ipIig~GGI~-----s~~D-a~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 223 RLPLRWIAILSGRVKASLAASGGVH-----DAED-VVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred hHHHHHHHHHHcccCCCEEEECCCC-----CHHH-HHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 2336788899888899999876211 1233 3344459999998852211 2244566666777764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.56 Score=44.84 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC---CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY---SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf---sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
+...+.++.+.+.|+..|-| |+|- .|... ||.+ |+ .++.||+.+. -+++++
T Consensus 61 d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~giv-qr-----------------avr~ik~~~p-~l~iit 121 (330)
T COG0113 61 DRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIV-QR-----------------AVRAIKEAFP-ELVVIT 121 (330)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChH-HH-----------------HHHHHHHhCC-CeEEEe
Confidence 57899999999999998776 8883 23222 3422 32 4555665543 344442
Q ss_pred ------cCc----chhccC--------HHHHHHHH---HHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC-----
Q 021527 147 ------YYN----PILKRG--------VDNFMSTV---RDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT----- 200 (311)
Q Consensus 147 ------Y~n----~i~~~g--------~~~fi~~~---~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis----- 200 (311)
|.. .+...+ ++.+.+.+ +++|+|-|-=.|+=......+++.+.+.|...+..++
T Consensus 122 DvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAGAdivAPSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKy 201 (330)
T COG0113 122 DVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAGADIVAPSDMMDGRVGAIREALDEAGFIDVPIMSYSAKY 201 (330)
T ss_pred eecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHcCCCeecccccccchHHHHHHHHHHcCCCcceeeehhHHH
Confidence 211 111111 13344432 6799998654566556677788889999987666433
Q ss_pred ---------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc
Q 021527 201 ---------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP 252 (311)
Q Consensus 201 ---------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P 252 (311)
|....|.++++.. ..+|...++=.- . -...+.++++|+.+++|
T Consensus 202 ASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKP-------a--l~YLDIi~~vk~~~~lP 272 (330)
T COG0113 202 ASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKP-------A--LPYLDIIRRVKEEFNLP 272 (330)
T ss_pred hhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcC-------C--chHHHHHHHHHHhcCCC
Confidence 3333444544433 256766554111 1 13568899999999999
Q ss_pred EEEeeCCC
Q 021527 253 VAVGFGIS 260 (311)
Q Consensus 253 v~vGfGIs 260 (311)
+ +..-||
T Consensus 273 ~-~AYqVS 279 (330)
T COG0113 273 V-AAYQVS 279 (330)
T ss_pred e-EEEecc
Confidence 9 555554
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.49 Score=44.32 Aligned_cols=157 Identities=14% Similarity=0.166 Sum_probs=93.5
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSC 140 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~i 140 (311)
+..+..+.-++--+ .+.++...++|+|.|.+.+|-+ .++++.+.++..|+. ..+
T Consensus 71 ~~~~~~~~~~~~~~----~~~l~~a~~~gv~~iri~~~~~---------------------~~~~~~~~i~~ak~~G~~v 125 (266)
T cd07944 71 NTKIAVMVDYGNDD----IDLLEPASGSVVDMIRVAFHKH---------------------EFDEALPLIKAIKEKGYEV 125 (266)
T ss_pred CCEEEEEECCCCCC----HHHHHHHhcCCcCEEEEecccc---------------------cHHHHHHHHHHHHHCCCeE
Confidence 45667777655422 5677888899999999976543 244556677777754 333
Q ss_pred cEEEEecCcchhccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-C--CCeEEEeCCCChHHHHHH
Q 021527 141 PIALFTYYNPILKRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-K--IELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-g--i~~I~lisp~t~~eri~~ 210 (311)
-+.++. .+.+.. .++++.+.++|++.+.++| +.+++..++...++++ + +.+-+-...+.--.-...
T Consensus 126 ~~~~~~----a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~ 201 (266)
T cd07944 126 FFNLMA----ISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANT 201 (266)
T ss_pred EEEEEe----ecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHH
Confidence 233322 112233 3566677889999999998 5678888888887764 3 333333333332233344
Q ss_pred HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc
Q 021527 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES 248 (311)
Q Consensus 211 i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~ 248 (311)
++....|..++-+..+.-|.+.+ +..+++++..+++.
T Consensus 202 laA~~aGa~~vd~s~~G~G~~aG-N~~~E~~v~~l~~~ 238 (266)
T cd07944 202 LEAIELGVEIIDATVYGMGRGAG-NLPTELLLDYLNNK 238 (266)
T ss_pred HHHHHcCCCEEEEecccCCCCcC-cHHHHHHHHHHHHh
Confidence 54556788787443334555544 33455666666543
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.26 Score=42.56 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=57.9
Q ss_pred CccEEEEEeCCCCC----hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc
Q 021527 62 KVALIPYITAGDPD----LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ 137 (311)
Q Consensus 62 ~~~li~yi~~G~P~----~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~ 137 (311)
+..++ +-.|.++ .+.+.+.++.+.+.|+|.+.+..||--+. ++ +.+.+++.++++++.
T Consensus 48 ~~~v~--~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~-~~---------------~~~~~~~~~~~i~~~ 109 (201)
T cd00945 48 DVPVI--VVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLK-EG---------------DWEEVLEEIAAVVEA 109 (201)
T ss_pred CCeEE--EEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHh-CC---------------CHHHHHHHHHHHHHH
Confidence 44444 4455665 89999999999999999999986661100 00 245667788888776
Q ss_pred --CCCcEEEEecCcchhccCHH---HHHHHHHHcCCcEEEec
Q 021527 138 --MSCPIALFTYYNPILKRGVD---NFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 138 --~~iPiilm~Y~n~i~~~g~~---~fi~~~~~aGadGviip 174 (311)
.++|+++ |-+|-.....+ +.++.+.+.|++++=..
T Consensus 110 ~~~~~pv~i--y~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 110 ADGGLPLKV--ILETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred hcCCceEEE--EEECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 4788766 33332211222 23344567788887553
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.38 Score=45.28 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=100.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEc---CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEE-EecCc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELG---VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIAL-FTYYN 149 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG---~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiil-m~Y~n 149 (311)
+.+..++.++...+.|++.+.+. .-++|+ .++.+.++++.+|++. ++.+.. .++.
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~-------------------~~e~~~ei~~~ik~~~p~l~i~~s~G~~- 100 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGRGLDDK-------------------KLEYVAEAAKAVKKEVPGLHLIACNGTA- 100 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccCCCCcc-------------------cHHHHHHHHHHHHhhCCCcEEEecCCCC-
Confidence 45778888888888888887762 112221 2345667888888763 555432 2332
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec---------C----CChhhHHHHHHHHHHcCCCe----EEEeCCCChHHHHHHHH
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP---------D----VPLEETESLQKEAMKNKIEL----VLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip---------D----lp~ee~~~~~~~~~~~gi~~----I~lisp~t~~eri~~i~ 212 (311)
..+-++.++++|+|.+... + -.+++..+..+.+++.|++. ++-. -.|.++|++.+.
T Consensus 101 ------~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl-GEt~ed~~~~l~ 173 (279)
T PRK08508 101 ------SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL-GESWEDRISFLK 173 (279)
T ss_pred ------CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec-CCCHHHHHHHHH
Confidence 2667888999999988742 2 22345555666788889864 2333 455666754443
Q ss_pred Hh---CCceE---EEEecCCccCCCCCCC-chHHHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 213 EA---SEGFV---YLVSSIGVTGARASIS-GHVQTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 213 ~~---a~gfi---Y~vs~~G~TG~~~~~~-~~~~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.. ....+ ++....|+.-.....+ .+....+.-.|-.. .+++..|--....+.-...+.+||+++++|-.+
T Consensus 174 ~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~~~~~~~g~n~~~~g~~l 253 (279)
T PRK08508 174 SLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYEIFEAGANAIVIGDYL 253 (279)
T ss_pred HHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhHHHHHhcCCcceeecCcc
Confidence 32 22222 2233333211111121 12223333333333 344433332222344566778999999999976
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.-
T Consensus 254 t~ 255 (279)
T PRK08508 254 TT 255 (279)
T ss_pred cC
Confidence 54
|
|
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.079 Score=51.11 Aligned_cols=103 Identities=18% Similarity=0.349 Sum_probs=78.4
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILK 153 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~ 153 (311)
-|.+.|++.++.|.++|+|++=+-+|-. ++| +.+++|++++++|++..-.||
T Consensus 33 ~Dv~aTv~QI~~L~~aG~dIVRvtv~~~---------e~A---------------~A~~~Ik~~~~vPLVaDiHf~---- 84 (361)
T COG0821 33 ADVEATVAQIKALERAGCDIVRVTVPDM---------EAA---------------EALKEIKQRLNVPLVADIHFD---- 84 (361)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEecCCH---------HHH---------------HHHHHHHHhCCCCEEEEeecc----
Confidence 4678899999999999999999976652 222 477889999999999987776
Q ss_pred cCHHHHHHHHHHcCCcEEEec--CCChhh-HHHHHHHHHHcCCCeEEEeCCCChHHH
Q 021527 154 RGVDNFMSTVRDIGIRGLVVP--DVPLEE-TESLQKEAMKNKIELVLFTTPTTPTDR 207 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviip--Dlp~ee-~~~~~~~~~~~gi~~I~lisp~t~~er 207 (311)
.++.-.+.++|+|.+=|. ....++ ..++.+.++++|+..=.-++--+-+++
T Consensus 85 ---~rla~~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~ 138 (361)
T COG0821 85 ---YRLALEAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKR 138 (361)
T ss_pred ---HHHHHHhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCchhHH
Confidence 356777889999998773 344444 677899999999987666654444433
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.41 Score=48.53 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC-cchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY-NPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~-n~i~~~g 155 (311)
+-...+++...++|+|++=+. |++-|-+.++.+ ++.+|+.-..-.+.++|. +|.+...
T Consensus 105 dvv~~fv~~a~~~Gidi~Rif----d~lnd~~n~~~a-----------------i~~ak~~G~~~~~~i~yt~sp~~t~~ 163 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIF----DALNDPRNIQQA-----------------LRAVKKTGKEAQLCIAYTTSPVHTLN 163 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEc----ccCCCHHHHHHH-----------------HHHHHHcCCEEEEEEEEEeCCcCcHH
Confidence 445566888899999999995 455555444443 333343222222444553 3432111
Q ss_pred -HHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcC-CCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCcc
Q 021527 156 -VDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNK-IELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVT 228 (311)
Q Consensus 156 -~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~g-i~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~T 228 (311)
..++++.+.+.|+|.|.+.| +.+++..++.+.+++.. +.+-+-...+.--.-...++....|..++- +..| -
T Consensus 164 y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g-~ 242 (468)
T PRK12581 164 YYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSP-F 242 (468)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccc-c
Confidence 13566778899999999998 55788888888887742 332222333332233344445556666663 3333 3
Q ss_pred CCCCCCCchHHHHHHHHhh
Q 021527 229 GARASISGHVQTLLREIKE 247 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~ 247 (311)
|.+++ ++.+++++.-++.
T Consensus 243 g~gag-N~~tE~lv~~L~~ 260 (468)
T PRK12581 243 SEGTS-QPATESMYLALKE 260 (468)
T ss_pred CCCcC-ChhHHHHHHHHHh
Confidence 33344 5556677776654
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.69 Score=45.24 Aligned_cols=172 Identities=12% Similarity=0.143 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH---
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL--- 128 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~--- 128 (311)
+.++.+.+.+...- +...+.++ .+.++.+.++|+|.|.+-+|-||. .++ ...+.+.++.+
T Consensus 53 e~i~~i~~~~~~~~--i~~~~r~~----~~di~~a~~~g~~~i~i~~~~Sd~-----~~~------~~~~~s~~e~l~~~ 115 (365)
T TIGR02660 53 AVIRAIVALGLPAR--LMAWCRAR----DADIEAAARCGVDAVHISIPVSDL-----QIE------AKLRKDRAWVLERL 115 (365)
T ss_pred HHHHHHHHcCCCcE--EEEEcCCC----HHHHHHHHcCCcCEEEEEEccCHH-----HHH------HHhCcCHHHHHHHH
Confidence 45555554433322 22333444 456778888999999999888763 111 12345555555
Q ss_pred -HHHHHhhccCCCcEEEEecCcchhccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEe
Q 021527 129 -SMLKEVVPQMSCPIALFTYYNPILKRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFT 199 (311)
Q Consensus 129 -~~i~~ir~~~~iPiilm~Y~n~i~~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~li 199 (311)
+.++..++. ...+. +++.+ ..+... .++++.+.++|+|.+.++| +.+++..++...+++. ++.+-+-.
T Consensus 116 ~~~i~~ak~~-g~~v~-~~~ed-~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~ 192 (365)
T TIGR02660 116 ARLVSFARDR-GLFVS-VGGED-ASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMHA 192 (365)
T ss_pred HHHHHHHHhC-CCEEE-EeecC-CCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 444444443 33332 33322 223333 3455677889999999998 5567777777776653 54433333
Q ss_pred CCCChHHHHHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHH
Q 021527 200 TPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREI 245 (311)
Q Consensus 200 sp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~v 245 (311)
..+.--.-...++....|.-++ .|..| -|.+.+. .++++++..+
T Consensus 193 HNd~GlA~ANalaA~~aGa~~vd~tl~G-iGeraGN-~~lE~lv~~L 237 (365)
T TIGR02660 193 HNDLGMATANTLAAVRAGATHVNTTVNG-LGERAGN-AALEEVAMAL 237 (365)
T ss_pred cCCCChHHHHHHHHHHhCCCEEEEEeec-ccccccc-CCHHHHHHHH
Confidence 3333323334444555677677 34444 4555443 3345555555
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.059 Score=52.98 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=32.3
Q ss_pred HHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 241 ~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.+.++++..++||++ +||.+.+++.++.+.|||+|++|.
T Consensus 179 ~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 179 NLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred HHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 355555566899987 679999999999999999999884
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.26 Score=44.10 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=88.6
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCc-c
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYN-P 150 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n-~ 150 (311)
+...++..+.++...+.|+|.+-+- | - +++..++.. +.++.+-+--+ |
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~-----p-----~--------------------~v~~~~~~l~~~~~~v~~~~~fp 62 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVN-----P-----C--------------------FVPLAREALKGSGVKVCTVIGFP 62 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEc-----H-----H--------------------HHHHHHHHcCCCCcEEEEEEecC
Confidence 4456788888888888899999883 1 1 222222111 12222221111 1
Q ss_pred hhccCH---HHHHHHHHHcCCcEEEec-CCC----------hhhHHHHHHHHHHcCCCe--EEEeCCCChHHHHHHHHHh
Q 021527 151 ILKRGV---DNFMSTVRDIGIRGLVVP-DVP----------LEETESLQKEAMKNKIEL--VLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 151 i~~~g~---~~fi~~~~~aGadGviip-Dlp----------~ee~~~~~~~~~~~gi~~--I~lisp~t~~eri~~i~~~ 214 (311)
....-. -.-++.+.+.|||.+-+. +.. .+|..++++.|. |+.+ |+-...-+ ++.+...++.
T Consensus 63 ~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~-~~~i~~a~ri 139 (203)
T cd00959 63 LGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLLT-DEEIIKACEI 139 (203)
T ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCCC-HHHHHHHHHH
Confidence 111111 224678889999988662 222 122334444443 5432 22223333 3444444443
Q ss_pred --CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcE
Q 021527 215 --SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADG 275 (311)
Q Consensus 215 --a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADG 275 (311)
..|..|+=+.+|.++.. ...+++..+.+.++ ..+||-+.+||+|.+++.++..+|||=
T Consensus 140 a~e~GaD~IKTsTG~~~~~-at~~~v~~~~~~~~--~~v~ik~aGGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 140 AIEAGADFIKTSTGFGPGG-ATVEDVKLMKEAVG--GRVGVKAAGGIRTLEDALAMIEAGATR 199 (203)
T ss_pred HHHhCCCEEEcCCCCCCCC-CCHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhChhh
Confidence 24667776555544221 11222222223233 468999999999999999999999874
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.63 Score=45.79 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=84.6
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH----hhccCCCcEEEEecCcchhccC
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE----VVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~----ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+.++.+.++|+|.|.+.+|-||. .+ -...|.+.++.++.+.+ .++. ...+.+- . ....+..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~-----h~------~~~~~~s~~~~l~~~~~~v~~a~~~-G~~v~~~-~-ed~~r~~ 143 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDI-----HI------KHKLKKTREEVLERMVEAVEYAKDH-GLYVSFS-A-EDASRTD 143 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHH-----HH------HHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEE-e-ccCCCCC
Confidence 456777888999999999888874 11 12345666666664443 3332 3333322 1 1122222
Q ss_pred H---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCC
Q 021527 156 V---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIG 226 (311)
Q Consensus 156 ~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G 226 (311)
. .++++.+.++|++.+.++| +.+++..++...+++. ++.+-+-...+.--.-...++....|..++- |..|
T Consensus 144 ~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~G 223 (378)
T PRK11858 144 LDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNG 223 (378)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeecc
Confidence 2 3566778889999999998 5567777777776654 4443333433333233344445556777773 4444
Q ss_pred ccCCCCCCCchHHHHHHHHh
Q 021527 227 VTGARASISGHVQTLLREIK 246 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk 246 (311)
-|.+.+. ..+++++..++
T Consensus 224 -lGeraGN-a~lE~vv~~L~ 241 (378)
T PRK11858 224 -LGERAGN-AALEEVVMALK 241 (378)
T ss_pred -ccccccC-ccHHHHHHHHH
Confidence 3444432 23444444443
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.031 Score=52.88 Aligned_cols=125 Identities=23% Similarity=0.233 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCC----C-----CC-------CChHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYS----D-----PL-------ADGPVIQ 111 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pfs----D-----P~-------aDGp~Iq 111 (311)
..+.+.++..++.-...+..=+. |+.+++.++++.++++|+|.|.+-+-+. | |. ..||.++
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKl~---~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~ 219 (301)
T PRK07259 143 ELAYEVVKAVKEVVKVPVIVKLT---PNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIK 219 (301)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcC---CCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcc
Confidence 45667777776554444444443 5667888999999999999998721110 1 11 1122211
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe-------cCCChhhHHHH
Q 021527 112 AAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV-------PDVPLEETESL 184 (311)
Q Consensus 112 ~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii-------pDlp~ee~~~~ 184 (311)
. -.++.++++++.+++||+..+-.+ . .+.+.++..+|+|+|-+ |+++-+-..++
T Consensus 220 p-------------~~l~~v~~i~~~~~ipvi~~GGI~-----~-~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 220 P-------------IALRMVYQVYQAVDIPIIGMGGIS-----S-AEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred c-------------ccHHHHHHHHHhCCCCEEEECCCC-----C-HHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence 1 135688889888899999876432 1 23444555689998877 33332223445
Q ss_pred HHHHHHcCCC
Q 021527 185 QKEAMKNKIE 194 (311)
Q Consensus 185 ~~~~~~~gi~ 194 (311)
...+.++|.+
T Consensus 281 ~~~~~~~g~~ 290 (301)
T PRK07259 281 EAYLDKYGIK 290 (301)
T ss_pred HHHHHHcCCC
Confidence 5556666654
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.11 Score=47.41 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=30.4
Q ss_pred HHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 240 TLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 240 ~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
+.++.+++.+ .++|-+-+||+|.+++.+++++|||=+
T Consensus 167 ~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~ri 205 (221)
T PRK00507 167 EDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRL 205 (221)
T ss_pred HHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence 4455555554 489999999999999999999999866
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.39 Score=50.09 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=92.1
Q ss_pred HHHHHHHcCCccEEEEEeCC-----CCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 53 TFTRLKKQGKVALIPYITAG-----DPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G-----~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
+++.+++...+..+..+..| |-.+ +...++++...++|+|++.+..+.+|. +-+
T Consensus 66 ~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~----~~~--------------- 126 (593)
T PRK14040 66 RLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP----RNL--------------- 126 (593)
T ss_pred HHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH----HHH---------------
Confidence 34444444444444444444 3332 345678888999999999998555552 222
Q ss_pred HHHHHHHHhhccCCCcEEEEecC-cchhccC-HHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEE
Q 021527 126 AILSMLKEVVPQMSCPIALFTYY-NPILKRG-VDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLF 198 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~-n~i~~~g-~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~l 198 (311)
...++..|+.-..--+..+|. +|.+... +.++++.+.+.|+|.+.+.| +.+++..++.+.+++. ++.+-+-
T Consensus 127 --~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H 204 (593)
T PRK14040 127 --ETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLH 204 (593)
T ss_pred --HHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 223334443221111122331 3322110 13566678889999999988 5567888887777653 4443333
Q ss_pred eCCCChHHHHHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHHhh
Q 021527 199 TTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 199 isp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
...++--.-...++....|..++ .+..|. |.+.+ ++.+.+++..++.
T Consensus 205 ~Hnt~GlA~An~laAieAGa~~vD~ai~gl-G~~~G-n~~le~vv~~L~~ 252 (593)
T PRK14040 205 CHATTGLSTATLLKAIEAGIDGVDTAISSM-SMTYG-HSATETLVATLEG 252 (593)
T ss_pred ECCCCchHHHHHHHHHHcCCCEEEeccccc-ccccc-chhHHHHHHHHHh
Confidence 44443333344454555676666 344443 33333 3345566666643
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.49 Score=43.87 Aligned_cols=153 Identities=13% Similarity=0.188 Sum_probs=85.5
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH----HHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL----SMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~----~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+.++...++|+|.|.+.+|.||+ .+++ ..+.+.++.+ +.++..|+. ...+.+ +... ..++..
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~-----~~~~------~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~-~~~~-~~~~~~ 138 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDI-----HLAH------KLGKDRAWVLDQLRRLVGRAKDR-GLFVSV-GAED-ASRADP 138 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHH-----HHHH------HhCCCHHHHHHHHHHHHHHHHHC-CCeEEE-eecc-CCCCCH
Confidence 44666778999999999888874 1111 1234444444 455555543 233322 1111 111222
Q ss_pred ---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHH-cCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 157 ---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMK-NKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 157 ---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~-~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
.++++.+.++|++.+.++| +.+++..++...+++ +++.+-+-...+.--.-...++....|..++-+..+.-
T Consensus 139 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~ 218 (259)
T cd07939 139 DFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGL 218 (259)
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc
Confidence 3566677889999999998 556777777777665 34433333333332233344555567777774444445
Q ss_pred CCCCCCCchHHHHHHHHhhc
Q 021527 229 GARASISGHVQTLLREIKES 248 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~ 248 (311)
|.+.+. ..+++++..+++.
T Consensus 219 G~~aGN-~~tE~lv~~l~~~ 237 (259)
T cd07939 219 GERAGN-AALEEVVMALKHL 237 (259)
T ss_pred cccccC-cCHHHHHHHHHHh
Confidence 665553 3456666666554
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.61 Score=44.73 Aligned_cols=186 Identities=13% Similarity=0.088 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+..++.++.+.+.|+..+.+..-...|. +. .++.++++++.+++..++.+.+. .. . -
T Consensus 93 ~eeI~~~~~~~~~~g~~~~~l~~~g~~p~--~~--------------~~~~~~e~i~~i~~~~~i~~~~~--~g-~---l 150 (336)
T PRK06256 93 IEELIEAAKEAIEEGAGTFCIVASGRGPS--GK--------------EVDQVVEAVKAIKEETDLEICAC--LG-L---L 150 (336)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecCCCCC--ch--------------HHHHHHHHHHHHHhcCCCcEEec--CC-c---C
Confidence 36778888888888987666522122221 11 12456778888887655544332 11 1 1
Q ss_pred HHHHHHHHHHcCCcEEEec-------------CCChhhHHHHHHHHHHcCCCeEE--Ee-CCCChHHHHHHHHH---hCC
Q 021527 156 VDNFMSTVRDIGIRGLVVP-------------DVPLEETESLQKEAMKNKIELVL--FT-TPTTPTDRMKAIVE---ASE 216 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip-------------Dlp~ee~~~~~~~~~~~gi~~I~--li-sp~t~~eri~~i~~---~a~ 216 (311)
.++.++.++++|++.+.+. .-..++..+..+.+++.|+.... ++ ...+.+++.+.+.. ...
T Consensus 151 ~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~ 230 (336)
T PRK06256 151 TEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDA 230 (336)
T ss_pred CHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCC
Confidence 2678899999999998661 12234555667778888985431 22 24555665443322 222
Q ss_pred ceEEEEecCCccCCC--CCCCchHHHHH---HHHhhcC-CCc--EEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGAR--ASISGHVQTLL---REIKESS-TKP--VAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~--~~~~~~~~~~l---~~vk~~~-~~P--v~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+.+-......|+. ...+.+..+.+ .-.|-.. +.. +..|-...-.+.-...+ +||+++++|-.+.-
T Consensus 231 ~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~~lt~ 305 (336)
T PRK06256 231 DSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGNYLTT 305 (336)
T ss_pred CEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECCcccC
Confidence 223221122222321 11112233444 4444443 333 43333233333334445 79999999988654
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.83 Score=42.73 Aligned_cols=153 Identities=12% Similarity=0.164 Sum_probs=88.3
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH----HHhhcc-CCCcEEEEe-cCcchhcc
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSML----KEVVPQ-MSCPIALFT-YYNPILKR 154 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i----~~ir~~-~~iPiilm~-Y~n~i~~~ 154 (311)
+.++...++|+|.|.+-+|.||. .++. ..|.+.++.++.+ +..|+. ..+-+.++. +..|..
T Consensus 75 ~di~~a~~~g~~~i~i~~~~S~~-----~~~~------~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~-- 141 (262)
T cd07948 75 DDARIAVETGVDGVDLVFGTSPF-----LREA------SHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLV-- 141 (262)
T ss_pred HHHHHHHHcCcCEEEEEEecCHH-----HHHH------HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHH--
Confidence 45666778999999999998874 1111 2345555544444 444443 333344432 222221
Q ss_pred CHHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG 229 (311)
-+.++++.+.++|++.+.++| +.+++..++...+++. ++..-+-...+.--.-...++....|..++-+..+.-|
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlG 221 (262)
T cd07948 142 DLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIG 221 (262)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc
Confidence 135677888999999999998 4567777777777664 43332333333222333344444567777754444567
Q ss_pred CCCCCCchHHHHHHHHhh
Q 021527 230 ARASISGHVQTLLREIKE 247 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~ 247 (311)
.+.+.. .+++++.-+..
T Consensus 222 eraGn~-~~e~~~~~l~~ 238 (262)
T cd07948 222 ERNGIT-PLGGLIARMYT 238 (262)
T ss_pred cccCCc-cHHHHHHHHHh
Confidence 776644 45566665643
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK09283 delta-aminolevulinic acid dehydratase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.76 Score=44.23 Aligned_cols=150 Identities=17% Similarity=0.273 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC-CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc-EEEEe-
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY-SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP-IALFT- 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf-sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP-iilm~- 146 (311)
+...+.++.+.+.|+..+-| |+|- .|+.. ||++. +.++.||+.+ | +++++
T Consensus 59 d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~~~g~v~------------------rair~iK~~~--p~l~vi~D 118 (323)
T PRK09283 59 DLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYNPDGLVQ------------------RAIRAIKKAF--PELGVITD 118 (323)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccCCCCHHH------------------HHHHHHHHhC--CCcEEEEe
Confidence 57899999999999998876 7653 33332 34432 2455666553 3 34442
Q ss_pred -----cCc----chhccCH-------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC-------
Q 021527 147 -----YYN----PILKRGV-------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT------- 200 (311)
Q Consensus 147 -----Y~n----~i~~~g~-------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis------- 200 (311)
|.. .+...|. +...+. .+++|+|-|--.|.=.......++.+.++|+..+.+++
T Consensus 119 VcLc~YT~hGHcGil~~g~idND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS 198 (323)
T PRK09283 119 VCLDEYTSHGHCGILEDGYVDNDETLELLAKQALSQAEAGADIVAPSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYAS 198 (323)
T ss_pred eeccCCCCCCceecccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccccccHHHHHHHHHHHCCCCCCceeecHHHHHH
Confidence 211 1111121 223332 36799999766687667788889999999996665433
Q ss_pred -------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEE
Q 021527 201 -------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVA 254 (311)
Q Consensus 201 -------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~ 254 (311)
|....|-+++... ..+|...++=.- .+ ...+.|+++|+.+++|++
T Consensus 199 ~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKP-------al--~YLDIi~~~k~~~~~Pva 269 (323)
T PRK09283 199 AFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKP-------AL--PYLDIIRRVKDEFNLPVA 269 (323)
T ss_pred hhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcC-------Cc--hHHHHHHHHHhcCCCCEE
Confidence 3333344444433 256766554111 11 256889999999999995
Q ss_pred E
Q 021527 255 V 255 (311)
Q Consensus 255 v 255 (311)
+
T Consensus 270 a 270 (323)
T PRK09283 270 A 270 (323)
T ss_pred E
Confidence 5
|
|
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.2 Score=46.98 Aligned_cols=189 Identities=15% Similarity=0.205 Sum_probs=110.2
Q ss_pred HHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCC--CCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 57 LKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSD--PLADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 57 ~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsD--P~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
++++-....|+|+++-+-+.....+++..+.+.|++-|-+ |=|.+. |..+|+. . +..++++
T Consensus 53 l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f-------------~--~a~~Li~ 117 (272)
T TIGR00676 53 IKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGF-------------N--YASELVE 117 (272)
T ss_pred HHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCC-------------C--CHHHHHH
Confidence 3333345679999999999999999999999999997763 533311 1122211 1 2234555
Q ss_pred Hhhcc-CCCcEEEEecCc-chhccCHHH---HHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCC--CeEEEeCCCC
Q 021527 133 EVVPQ-MSCPIALFTYYN-PILKRGVDN---FMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKI--ELVLFTTPTT 203 (311)
Q Consensus 133 ~ir~~-~~iPiilm~Y~n-~i~~~g~~~---fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi--~~I~lisp~t 203 (311)
.+++. -+..|.+-+|-+ .......+. .++.=.++|+|- ++.-+-+ +...+|.+.+++.|+ .+++-+.|-+
T Consensus 118 ~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f-~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~ 196 (272)
T TIGR00676 118 FIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADY-AITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIMPIT 196 (272)
T ss_pred HHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCe-EeeccccCHHHHHHHHHHHHHcCCCCCEecccCCcC
Confidence 55543 244566656543 111122332 233335689995 4543333 457788999999876 4555567777
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcE---EEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPV---AVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv---~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
+...+..+.. ..|+ .+|..+ ++++.+..+.+- -.|.-+. .++++++.+.|++|+=+-|
T Consensus 197 s~k~~~~~~~----------~~Gv-----~vP~~~---~~~l~~~~~~~~~~~~~gi~~~-~~~~~~l~~~g~~GiHl~t 257 (272)
T TIGR00676 197 NFKQLLRFAE----------RCGA-----EIPAWL---VKRLEKYDDDPEEVRAVGIEYA-TDQCEDLIAEGVPGIHFYT 257 (272)
T ss_pred CHHHHHHHHh----------ccCC-----CCCHHH---HHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHCCCCEEEEcC
Confidence 6665545433 1122 456544 444444333221 1244444 6899999999999995555
|
This protein is an FAD-containing flavoprotein. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.45 Score=43.52 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHcCC-ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC--CH
Q 021527 48 VGLAETFTRLKKQGK-VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT--NF 124 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~-~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~--~~ 124 (311)
....+.++.+++.++ ..+..+...| .+.++.+.++|+|.+.+-++-|| ...+. -+..+. .+
T Consensus 51 ~~~~~~i~~l~~~~~~~~~~~l~~~~-------~~~i~~a~~~g~~~i~i~~~~s~-----~~~~~----~~~~~~~~~~ 114 (265)
T cd03174 51 EDDWEVLRAIRKLVPNVKLQALVRNR-------EKGIERALEAGVDEVRIFDSASE-----THSRK----NLNKSREEDL 114 (265)
T ss_pred CCHHHHHHHHHhccCCcEEEEEccCc-------hhhHHHHHhCCcCEEEEEEecCH-----HHHHH----HhCCCHHHHH
Confidence 345566666666653 3444555555 67888999999999999766654 11111 112222 34
Q ss_pred HHHHHHHHHhhccCCCcEEEEecCcchhc--cC---HHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcC--C
Q 021527 125 NAILSMLKEVVPQMSCPIALFTYYNPILK--RG---VDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNK--I 193 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~Y~n~i~~--~g---~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~g--i 193 (311)
+++.+.++..++. ..++.+.. ..++. +. +.++++.+.+.|++.+.+.| +.+++..++.+.+++.- +
T Consensus 115 ~~~~~~i~~a~~~-G~~v~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~ 191 (265)
T cd03174 115 ENAEEAIEAAKEA-GLEVEGSL--EDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDV 191 (265)
T ss_pred HHHHHHHHHHHHC-CCeEEEEE--EeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCC
Confidence 4556666666653 44444432 01111 22 35677888999999999987 45677777777766643 2
Q ss_pred CeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc
Q 021527 194 ELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES 248 (311)
Q Consensus 194 ~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~ 248 (311)
.+-+-...+.--.-...++....|..++-+..+.-|.+.+. ..+++++..++..
T Consensus 192 ~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn-~~~e~~~~~l~~~ 245 (265)
T cd03174 192 PLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGN-AATEDLVAALEGL 245 (265)
T ss_pred eEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccC-ccHHHHHHHHHhc
Confidence 22222332222233334555567877774433444555443 3456666666553
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.71 Score=42.68 Aligned_cols=176 Identities=19% Similarity=0.253 Sum_probs=113.0
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
.+||. ++.+...+++|||.|=+= |--|---||. + .+..+++..+.|+-+-++.+
T Consensus 19 ~~Pd~---v~aA~~a~~aGAdgITvH-----lReDrRHI~d------------~----Dv~~l~~~~~~~lNlE~a~~-- 72 (237)
T TIGR00559 19 NEPDP---LRAALIAEQAGADGITVH-----LREDRRHIQD------------R----DVYDLKEALTTPFNIEMAPT-- 72 (237)
T ss_pred CCCCH---HHHHHHHHHcCCCEEEec-----CCCCcCcCCH------------H----HHHHHHHHcCCCEEeccCCC--
Confidence 35654 677788888999999883 4445444443 2 44455555667887877654
Q ss_pred hccCHHHHHHHHHHcCCcEE-EecCCCh--------------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGL-VVPDVPL--------------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGv-iipDlp~--------------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++|++.+.+.--+-+ ++||-+- +....+.+.+++.||.+.+|+.|. .+.++...+.
T Consensus 73 -----~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~-- 143 (237)
T TIGR00559 73 -----EEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEV-- 143 (237)
T ss_pred -----HHHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHh--
Confidence 789999988877655 4566442 225667888899999999999997 4555544443
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhc------CCCcEEEeeCCCCHHHHHHHHHc-C-CcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKES------STKPVAVGFGISKPEHVQQVAGW-G-ADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~------~~~Pv~vGfGIst~e~v~~v~~~-G-ADGvIVGSaiv~ 284 (311)
|..++.-.+|....... .....+.+++++.. .++-|-+|-|.+ .+++..+... + -+-+-||-+|+.
T Consensus 144 GAd~VELhTG~YA~a~~-~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn-y~Nv~~i~~~~~~i~EvnIGHsiia 217 (237)
T TIGR00559 144 GADRIEIHTGPYANAYN-KKEMAEELQRIVKASVHAHSLGLKVNAGHGLN-YHNVKYFAEILPYLDELNIGHAIIA 217 (237)
T ss_pred CcCEEEEechhhhcCCC-chhHHHHHHHHHHHHHHHHHcCCEEecCCCCC-HHhHHHHHhCCCCceEEecCHHHHH
Confidence 43344333343322111 11112235555442 367899999997 7999888655 3 577999988775
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.86 Score=42.02 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...+-...|.+-|...+-|-- -+||-.+ +-+.++.+.+++++++++.-+..-+ |.
T Consensus 42 ~~l~k~~~el~kkGy~g~llSG-Gm~srg~---------------VPl~kf~d~lK~lke~~~l~inaHv--------Gf 97 (275)
T COG1856 42 KSLLKRCMELEKKGYEGCLLSG-GMDSRGK---------------VPLWKFKDELKALKERTGLLINAHV--------GF 97 (275)
T ss_pred HHHHHHHHHHHhcCceeEEEeC-CcCCCCC---------------ccHHHHHHHHHHHHHhhCeEEEEEe--------ee
Confidence 4455666677888888877720 1333222 4567889999999998775544432 22
Q ss_pred --HHHHHHHHHcCCcEEEe---cC---------C--ChhhHHHHHHHHHHcCCCeEEEeCCC-------ChHHHHHHHHH
Q 021527 157 --DNFMSTVRDIGIRGLVV---PD---------V--PLEETESLQKEAMKNKIELVLFTTPT-------TPTDRMKAIVE 213 (311)
Q Consensus 157 --~~fi~~~~~aGadGvii---pD---------l--p~ee~~~~~~~~~~~gi~~I~lisp~-------t~~eri~~i~~ 213 (311)
|..++.+++.++|.+.+ .| + ..|...+....++++|+..++-++-. -..+.+.-+++
T Consensus 98 vdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~ 177 (275)
T COG1856 98 VDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVN 177 (275)
T ss_pred ccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhc
Confidence 67889999999998876 22 1 12344455667889999888765421 11244555555
Q ss_pred hCCceEEEEecCCccCCC--CCCCchHHHHHH---HHhhcCCCcEEEe----eCCCCHHHHHHHHHcCCcEE
Q 021527 214 ASEGFVYLVSSIGVTGAR--ASISGHVQTLLR---EIKESSTKPVAVG----FGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~--~~~~~~~~~~l~---~vk~~~~~Pv~vG----fGIst~e~v~~v~~~GADGv 276 (311)
.....+-++-...+.|++ ...|+++++.++ ..|+.+..||..| +|=..-+-=+....+|.|++
T Consensus 178 ~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~pv~iGCmrP~Ge~rvk~d~~av~~gVd~I 249 (275)
T COG1856 178 YEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPNPVSIGCMRPRGEWRVKLDKEAVLAGVDRI 249 (275)
T ss_pred CCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCCCeeEeecCcCchhHHHHHHHHHHcCCcee
Confidence 555555444344455543 334556665554 4566666688887 56655444455667788876
|
|
| >cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.16 Score=47.39 Aligned_cols=191 Identities=16% Similarity=0.200 Sum_probs=107.9
Q ss_pred HHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 57 LKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 57 ~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
+++++....|+|+++-+-+...+.+++..+.+.|++-|-+ |=|. ..|..-+ + .+....+..++++.+
T Consensus 53 l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~----~~~~~~~-----~--~~~~~~~a~~Li~~i 121 (274)
T cd00537 53 ILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPP----KGGDQPG-----A--KPVGFVYAVDLVELI 121 (274)
T ss_pred HHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCC----CCCCCCC-----C--CCCCCCCHHHHHHHH
Confidence 3344456789999999999999999999999999996555 5333 2221000 0 001111223455555
Q ss_pred hcc--CCCcEEEEecC--cchhccCHHHHHHH---HHHcCCcEEEec-CCChhhHHHHHHHHHHcCC--CeEEEeCCCCh
Q 021527 135 VPQ--MSCPIALFTYY--NPILKRGVDNFMST---VRDIGIRGLVVP-DVPLEETESLQKEAMKNKI--ELVLFTTPTTP 204 (311)
Q Consensus 135 r~~--~~iPiilm~Y~--n~i~~~g~~~fi~~---~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi--~~I~lisp~t~ 204 (311)
+.. ....+.+-+|- ||-.. ..+.-++. =.++||+-++-- =...+...++.+.+++.|+ .+++-+.|-++
T Consensus 122 ~~~~~~~~~igva~yPe~hp~~~-~~~~~~~~L~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~~s 200 (274)
T cd00537 122 RKENGGGFSIGVAAYPEGHPEAP-SLEEDIKRLKRKVDAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTS 200 (274)
T ss_pred HHhcCCCCccccccCCCcCCCCC-CHHHHHHHHHHHHHCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccccCC
Confidence 542 23345555554 22211 23333332 245799886552 2223567789999999984 56666778777
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCC---cEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK---PVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~---Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
...++.+.+.. |+ .+|..+ ++++.+..+. ..-.|.-+. .+.++++.+.|++|+=+
T Consensus 201 ~~~l~~~~~~~----------Gv-----~vP~~~---~~~l~~~~~~~~~~~~~g~~~~-~~l~~~l~~~~~~giH~ 258 (274)
T cd00537 201 YKQAKRFAKLC----------GV-----EIPDWL---LERLEKLKDDAEAVRAEGIEIA-AELCDELLEHGVPGIHF 258 (274)
T ss_pred HHHHHHHHHhh----------CC-----CCCHHH---HHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHcCCCEEEE
Confidence 77766664422 22 345544 4444322111 122233333 57788888778999833
|
5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.48 Score=48.40 Aligned_cols=169 Identities=14% Similarity=0.188 Sum_probs=94.5
Q ss_pred HHHHHHcCCcc-EEEEE----eCCCCChh--hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 54 FTRLKKQGKVA-LIPYI----TAGDPDLS--TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 54 f~~~~~~~~~~-li~yi----~~G~P~~~--~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
+..+++..++. |..++ ..||-.+. ...++++...++|+|++.+..|.+|. ..++.+
T Consensus 67 lr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv----~nl~~a------------- 129 (499)
T PRK12330 67 LRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP----RNLEHA------------- 129 (499)
T ss_pred HHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH----HHHHHH-------------
Confidence 33444433343 44444 56776653 57778899999999999997666553 332222
Q ss_pred HHHHHHHhhccCCCcEEEEecC-cchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc---CCCe
Q 021527 127 ILSMLKEVVPQMSCPIALFTYY-NPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN---KIEL 195 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~-n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~---gi~~ 195 (311)
++.+++.... -....+|. ++.+ ..+ ++++.+.+.|+|.+.+.| +.+++..++...+++. ++.+
T Consensus 130 -i~~vk~ag~~---~~~~i~yt~sp~~--t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI 203 (499)
T PRK12330 130 -MKAVKKVGKH---AQGTICYTVSPIH--TVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRI 203 (499)
T ss_pred -HHHHHHhCCe---EEEEEEEecCCCC--CHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeE
Confidence 2333333222 11222331 2332 233 455678889999999998 5578888888888775 3443
Q ss_pred EEEeCCCChHHHHHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHHhh
Q 021527 196 VLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 196 I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
-+-...+.--.-...++....|..++ .+..|. |.+++ ++.+++++.-++.
T Consensus 204 ~~H~Hnt~GlA~An~laAieAGad~vDtai~Gl-g~~aG-n~atE~vv~~L~~ 254 (499)
T PRK12330 204 NLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSM-SLGPG-HNPTESLVEMLEG 254 (499)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCEEEeecccc-ccccc-chhHHHHHHHHHh
Confidence 33344333333334444555676666 344443 33333 2445666666654
|
|
| >COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.79 Score=42.44 Aligned_cols=196 Identities=22% Similarity=0.308 Sum_probs=117.7
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSML 131 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i 131 (311)
+.|+..-++|+..+-.+....+| -.++.+..+|.|++-|+... .+.+.+.++..+
T Consensus 6 n~fK~~L~~g~~qiGlw~~l~~p------~~~Ei~A~aGfDwl~iD~EH-------------------apnd~~sl~~qL 60 (255)
T COG3836 6 NSFKAALAAGRPQIGLWLSLPDP------YMAEILATAGFDWLLIDGEH-------------------APNDLQSLLHQL 60 (255)
T ss_pred chHHHHHhCCCceEEeeecCCcH------HHHHHHHhcCCCEEEecccc-------------------cCccHHHHHHHH
Confidence 34444444677766667766666 45566778999999996222 235566777788
Q ss_pred HHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHH----------------------
Q 021527 132 KEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEA---------------------- 188 (311)
Q Consensus 132 ~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~---------------------- 188 (311)
+.+...-.-|++=-. .|-...++++.+.|+.++++|-+-- |+++++....
T Consensus 61 ~a~~~~~~~pvVR~p-------~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~ 133 (255)
T COG3836 61 QAVAAYASPPVVRPP-------VGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGR 133 (255)
T ss_pred HHhhccCCCCeeeCC-------CCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCC
Confidence 888776667766422 2445678899999999999985532 3444444332
Q ss_pred -----HHcCCCeEEEeCCCChH--HHHHHHHHhCCce--EEEE-----ecCCccCCCCCCCchHHHHHHHHhhcC---CC
Q 021527 189 -----MKNKIELVLFTTPTTPT--DRMKAIVEASEGF--VYLV-----SSIGVTGARASISGHVQTLLREIKESS---TK 251 (311)
Q Consensus 189 -----~~~gi~~I~lisp~t~~--eri~~i~~~a~gf--iY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~~---~~ 251 (311)
...+=+...++.-.|.+ +.+..|+.. +|. |++. ..+|..|.. -.+++.+-|+++-..+ ++
T Consensus 134 i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaav-eGVDgvFiGPaDLaas~G~~gn~--~hpeV~~aI~~~~~~i~aaGK 210 (255)
T COG3836 134 IADYLAQANDEICLLVQIETRAGLDNLDAIAAV-EGVDGVFIGPADLAASLGHLGNP--GHPEVQAAIEHIIARIRAAGK 210 (255)
T ss_pred HHHHHHhcccceEEEEEEccHHHHHHHHHHHcc-CCCCeEEECHHHHHHHcCCCCCC--CCHHHHHHHHHHHHHHHhcCC
Confidence 11222222333333332 445556443 332 4442 356666653 2345555555543321 22
Q ss_pred cEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 252 Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. .|+=-.+++.+++.+++|+.=|+||+-...
T Consensus 211 a--agil~~~p~~a~~yl~lGa~fvavG~D~~l 241 (255)
T COG3836 211 A--AGILAADPADARRYLALGATFVAVGSDTGL 241 (255)
T ss_pred c--cccccCCHHHHHHHHHhCCeEEEEeccHHH
Confidence 2 333346899999999999999999975544
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.07 Score=51.05 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCC-hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPD-LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~-~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
.+.+..+.+++.=...+...+..|+.+ ...+.++++.|+++|+|.|.+..-..+....|+ -.
T Consensus 118 ~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~-----------------~~ 180 (319)
T TIGR00737 118 LIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGE-----------------AN 180 (319)
T ss_pred HHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCc-----------------hh
Confidence 355566666544335677778778644 346789999999999999998422111111221 12
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
++.++++++.+++||+..|-.+ ..++..+.+.+.|+|+|.+.
T Consensus 181 ~~~i~~i~~~~~ipvi~nGgI~-----~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 181 WDIIARVKQAVRIPVIGNGDIF-----SPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred HHHHHHHHHcCCCcEEEeCCCC-----CHHHHHHHHHhhCCCEEEEC
Confidence 5688899998999999876332 23455555557899999995
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.14 Score=50.69 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.+.+++|+.+++||++.+|| +++++.++++.| ||.|-+|=+++.
T Consensus 303 ~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 303 QLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 45688999889999999999 579999999988 899999988765
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.98 Score=51.64 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=135.9
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..+++ +-++..|= -.|++...-++++.++.+..+|---.|....+. ..+ +..
T Consensus 1102 ~~~~l~~A~~~-~yav~afn---~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~-----------------~~~-~~~ 1159 (1378)
T PLN02858 1102 TKELLLNAEKG-GYAVGAFN---VYNLEGIEAVVAAAEAEKSPAILQVHPGALKQG-----------------GIP-LVS 1159 (1378)
T ss_pred HHHHHHHHHHC-CcEEEEEE---eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhc-----------------CHH-HHH
Confidence 56666665544 44555555 348899999999999999998876533322211 122 455
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE---Ee-
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL---FT- 199 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~---li- 199 (311)
+++...++.++||.+.. + +..-.+++..+.+.|.+.|.+ ..+|+|| ..++.+.++.+|+.+=- -+
T Consensus 1160 ~~~~~a~~~~vpV~lHL--D---Hg~~~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~ 1234 (1378)
T PLN02858 1160 CCIAAAEQASVPITVHF--D---HGTSKHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLS 1234 (1378)
T ss_pred HHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 66666777899999852 2 222357899999999999988 4788887 56788888888873210 01
Q ss_pred ------------CCCChHHHHHHHHHhCCceEEE-E---ecCCccCC-CCCCCchHHHHHHHHhhcC---CCcEEE--ee
Q 021527 200 ------------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTGA-RASISGHVQTLLREIKESS---TKPVAV--GF 257 (311)
Q Consensus 200 ------------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~-~~~~~~~~~~~l~~vk~~~---~~Pv~v--Gf 257 (311)
..-|.++..++..+. .|...+ + +..|.+-. ...++ .+.++++++.+ ++|++. |.
T Consensus 1235 g~e~~~~~~~~~~~~T~p~~a~~Fv~~-TgvD~LAvaiGt~HG~Y~~~~p~l~---~~~l~~i~~~~~~~~vpLVlHGgS 1310 (1378)
T PLN02858 1235 GTEDGLTVEEYEAKLTDVDQAKEFIDE-TGIDALAVCIGNVHGKYPASGPNLR---LDLLKELRALSSKKGVLLVLHGAS 1310 (1378)
T ss_pred CccCCccccccccCCCCHHHHHHHHHh-cCCcEEeeecccccccCCCCCCccC---HHHHHHHHHHhcCCCCcEEEeCCC
Confidence 002334555556554 344444 3 34443321 12232 36788998887 799866 77
Q ss_pred CCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 258 GIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
|+. .|++++..+.|.-=|=|+|.+.....
T Consensus 1311 G~~-~~~~~~ai~~Gi~KiNi~T~~~~a~~ 1339 (1378)
T PLN02858 1311 GLP-ESLIKECIENGVRKFNVNTEVRTAYM 1339 (1378)
T ss_pred CCC-HHHHHHHHHcCCeEEEeCHHHHHHHH
Confidence 886 79999999999999999998866543
|
|
| >cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.84 Score=43.74 Aligned_cols=155 Identities=18% Similarity=0.311 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC-CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe--
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY-SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT-- 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf-sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~-- 146 (311)
+...+.++.+.+.|+..+-| |+|- .|+.. ||++. +.++.+|+.+. -+++++
T Consensus 51 d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~v~------------------~air~iK~~~p-~l~vi~Dv 111 (314)
T cd00384 51 DSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDGIVQ------------------RAIRAIKEAVP-ELVVITDV 111 (314)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCChHH------------------HHHHHHHHhCC-CcEEEEee
Confidence 57899999999999998776 7763 23332 34322 24555565531 133332
Q ss_pred ----cCc----chhccC-------HHHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC--------
Q 021527 147 ----YYN----PILKRG-------VDNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT-------- 200 (311)
Q Consensus 147 ----Y~n----~i~~~g-------~~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis-------- 200 (311)
|.. .+...| ++...+. .+++|+|-|--.|+=.......++.+.++|...+..++
T Consensus 112 cLc~YT~hGHcGil~~~~idND~Tl~~L~k~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSa 191 (314)
T cd00384 112 CLCEYTDHGHCGILKDDYVDNDATLELLAKIAVSHAEAGADIVAPSDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASA 191 (314)
T ss_pred eccCCCCCCcceeccCCcCccHHHHHHHHHHHHHHHHcCCCeeecccccccHHHHHHHHHHHCCCCCCceeecHHHhhhh
Confidence 211 111111 1223332 36799999766677666778889999999996665432
Q ss_pred ------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE
Q 021527 201 ------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV 255 (311)
Q Consensus 201 ------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v 255 (311)
|....|-+++... ..+|...++=.- .+ ...+.|+++|+.+++|++
T Consensus 192 fYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKP-------al--~YLDIi~~~k~~~~~Pva- 261 (314)
T cd00384 192 FYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKP-------AL--AYLDIIRDVRERFDLPVA- 261 (314)
T ss_pred ccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcC-------Cc--hHHHHHHHHHHhcCCCEE-
Confidence 2222344444332 356766554111 11 256889999999999994
Q ss_pred eeCCC
Q 021527 256 GFGIS 260 (311)
Q Consensus 256 GfGIs 260 (311)
..-||
T Consensus 262 aYqVS 266 (314)
T cd00384 262 AYNVS 266 (314)
T ss_pred EEEcc
Confidence 44443
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.74 Score=43.52 Aligned_cols=155 Identities=15% Similarity=0.235 Sum_probs=90.5
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh----hcc-CCCcEEEEecCcchhccC
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV----VPQ-MSCPIALFTYYNPILKRG 155 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i----r~~-~~iPiilm~Y~n~i~~~g 155 (311)
+.++...++|++.|.+.+|-||. .++ ...+.+.++.++.++++ ++. ..+-+.++...++. +..
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~-----h~~------~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-r~~ 145 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLK-----HCT------EQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-RDS 145 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHH-----HHH------HHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-cCC
Confidence 45777788999999999988863 111 12345666666655554 332 33445555433332 334
Q ss_pred HH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 156 VD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 156 ~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
.+ ++++.+.+.|++.+.++| +.+++..++...+++. ++.+-+-...+.--.-...++....|.-++-+..+
T Consensus 146 ~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~ 225 (280)
T cd07945 146 PDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVN 225 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 43 455667889999999998 4567788887777653 23333333333333334445555677777744444
Q ss_pred ccCCCCCCCchHHHHHHHHhhc
Q 021527 227 VTGARASISGHVQTLLREIKES 248 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~ 248 (311)
.-|.+.+. ..+++++.-++..
T Consensus 226 GlGe~aGN-~~~E~~v~~L~~~ 246 (280)
T cd07945 226 GLGERAGN-APLASVIAVLKDK 246 (280)
T ss_pred cccccccC-ccHHHHHHHHHHh
Confidence 45555443 3456666666543
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.72 Score=42.85 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=87.8
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP 141 (311)
..+..++.++.++. +.++...++|+|.+-+.+|.|| -+. +.+.++..++. ..+-
T Consensus 75 ~~~~~~~~~~~~~~----~~i~~a~~~g~~~iri~~~~s~----~~~-----------------~~~~i~~ak~~G~~v~ 129 (263)
T cd07943 75 AKLGVLLLPGIGTV----DDLKMAADLGVDVVRVATHCTE----ADV-----------------SEQHIGAARKLGMDVV 129 (263)
T ss_pred CEEEEEecCCccCH----HHHHHHHHcCCCEEEEEechhh----HHH-----------------HHHHHHHHHHCCCeEE
Confidence 34555666677763 5567778899999999877765 222 23344444443 2222
Q ss_pred EEEE-ecC-cchhccCHHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CC-CeEEEeCCCChHHHHHHHHH
Q 021527 142 IALF-TYY-NPILKRGVDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KI-ELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 142 iilm-~Y~-n~i~~~g~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi-~~I~lisp~t~~eri~~i~~ 213 (311)
+.++ +|. ++- -+.++++.+.++|+|.+.++| +.+++..++.+.++++ +. .+-+-...+.--.-...++.
T Consensus 130 ~~~~~~~~~~~~---~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laA 206 (263)
T cd07943 130 GFLMMSHMASPE---ELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAA 206 (263)
T ss_pred EEEEeccCCCHH---HHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHH
Confidence 2222 222 221 134566788899999999998 5678888888887764 32 22222332222222333444
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhh
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
...|..++-+..+.-|.+.+. ..+++++.-++.
T Consensus 207 i~aGa~~vd~s~~GlG~~aGN-~~~E~lv~~L~~ 239 (263)
T cd07943 207 VEAGATRIDGSLAGLGAGAGN-TPLEVLVAVLER 239 (263)
T ss_pred HHhCCCEEEeecccccCCcCC-ccHHHHHHHHHh
Confidence 456887774333334555443 335555655543
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK15492 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.069 Score=50.08 Aligned_cols=123 Identities=16% Similarity=0.224 Sum_probs=70.0
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHHH----HHHHHHHcCCCeEEEeCCCChHHHHH------------HHHHh-C-C
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETES----LQKEAMKNKIELVLFTTPTTPTDRMK------------AIVEA-S-E 216 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~~----~~~~~~~~gi~~I~lisp~t~~eri~------------~i~~~-a-~ 216 (311)
-...++++|++.+++.. ..+.|..+ -...+.++|+.+|+-+.- +.++|-. ...+. . .
T Consensus 86 Sa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE-~~e~r~~g~~~~v~~~Ql~~~l~~~~~~ 164 (260)
T PRK15492 86 SPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGE-TLEQKNYGISDEILRTQLKIGLHGINPD 164 (260)
T ss_pred CHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCCHHHHHHHHHHHHHhcCCHh
Confidence 45678889999999863 11233322 455678889988876664 3333321 11110 1 1
Q ss_pred ---ce-EEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhh
Q 021527 217 ---GF-VYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQVAGW-GADGVIVGS 280 (311)
Q Consensus 217 ---gf-iY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGS 280 (311)
.. |-|.+ ..| ||.+...++...+..+.+|+. .+++|+.|++|+ |+++.+++.. ..||+.||.
T Consensus 165 ~~~~iiIAYEPvWAIG-tgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~-~~N~~~l~~~~diDG~LvG~ 242 (260)
T PRK15492 165 QLAKLRIAYEPVWAIG-EAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVN-AENANELFGQPHIDGLFIGR 242 (260)
T ss_pred hcCceEEEECChHHhC-CCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccC-HHHHHHHhcCCCCCEEEeeh
Confidence 11 22222 234 333323333333333333332 157999999997 8999998644 379999998
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+=.+
T Consensus 243 aSl~ 246 (260)
T PRK15492 243 SAWD 246 (260)
T ss_pred hhcC
Confidence 8665
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.34 Score=44.73 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=88.3
Q ss_pred eCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe
Q 021527 70 TAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT 146 (311)
Q Consensus 70 ~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~ 146 (311)
+.||-.. ......+......|+|+|-+|+.-.. ..+++.. ..-..++.+++. .+..++.-.
T Consensus 58 tiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~------~~~~a~e----------~l~~v~~av~~~~~~~~vVAv~ 121 (235)
T PF04476_consen 58 TIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCK------DYDEAIE----------ALEAVVRAVKDFDPDKKVVAVG 121 (235)
T ss_pred EecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCC------CHHHHHH----------HHHHHHHHHhhhCCCcEEEEEE
Confidence 4455322 34444555566789999999955322 1222210 011122334432 234455555
Q ss_pred cCcc--hhccCHHHHHHHHHHcCCcEEEec----------C-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH
Q 021527 147 YYNP--ILKRGVDNFMSTVRDIGIRGLVVP----------D-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 147 Y~n~--i~~~g~~~fi~~~~~aGadGviip----------D-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~ 213 (311)
|.+- +-.....+..+.++++|++|+.+= | ++.++..+|.+.++++|+..-+- -.-..+.+..+..
T Consensus 122 yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLA--GSL~~~di~~L~~ 199 (235)
T PF04476_consen 122 YADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALA--GSLRFEDIPRLKR 199 (235)
T ss_pred ecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhcc--ccCChhHHHHHHh
Confidence 6552 111233456678899999999882 2 55678999999999999864332 2233455666666
Q ss_pred hCCceEEEEecCCccCCCC--CCCchHHHHHHHHhhcC
Q 021527 214 ASEGFVYLVSSIGVTGARA--SISGHVQTLLREIKESS 249 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~--~~~~~~~~~l~~vk~~~ 249 (311)
....|+=+-+.....|.|+ .+++ +.++++|+..
T Consensus 200 l~pD~lGfRGAvC~ggdR~~G~id~---~~V~~lr~~~ 234 (235)
T PF04476_consen 200 LGPDILGFRGAVCGGGDRRAGRIDP---ELVAALRALM 234 (235)
T ss_pred cCCCEEEechhhCCCCCcCccccCH---HHHHHHHHhc
Confidence 6666654433333333443 2554 5677776643
|
|
| >COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.2 Score=45.85 Aligned_cols=193 Identities=24% Similarity=0.376 Sum_probs=106.0
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCC---ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC-cchhccC
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLA---DGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY-NPILKRG 155 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~a---DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~-n~i~~~g 155 (311)
-.++.-+.+|+|.|-+= .+--|- .|.. .--|..|-+-+-++++.+++-.. -++||..-... +|+-+
T Consensus 32 lsAkaeeagg~d~i~~~--nsgr~r~ag~~Sl-----~gLLa~~naN~~vld~a~e~lp~~r~tpv~aGv~~~DPf~~-- 102 (276)
T COG5564 32 LSAKAEEAGGIDLIYIY--NSGRYRMAGRGSL-----AGLLAYGNANDIVLDMAREVLPVVRQTPVLAGVNGTDPFCR-- 102 (276)
T ss_pred hhhhhhhcCCceEEEEe--cCccccccccchh-----hhhhhccCccHHHHHHHHhhCCccccCcceecccCCCcchh--
Confidence 34566677899998871 111000 1111 00234444444556777776543 35776554322 34433
Q ss_pred HHHHHHHHHHcCCcEEEe-c-----C----CChhh-------HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 156 VDNFMSTVRDIGIRGLVV-P-----D----VPLEE-------TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvii-p-----D----lp~ee-------~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
...|++.++.+|..||.. | | ..+|| -.++..++.+.++-...++ .+..+. .+..+ .|.
T Consensus 103 ~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV--~s~~eA-qa~~~--aGa 177 (276)
T COG5564 103 MVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYV--FSFEEA-QAMTK--AGA 177 (276)
T ss_pred HHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhcccccccee--cCHHHH-HHHHH--cCc
Confidence 478999999999998754 2 2 11233 1223444444454333333 233332 22323 455
Q ss_pred EEEEecCC-----ccCCCCCCC-chHHHHHHHH----hhcCC--CcEEEeeCCCCHHHHHHHHHc--CCcEEEEhhHhhc
Q 021527 219 VYLVSSIG-----VTGARASIS-GHVQTLLREI----KESST--KPVAVGFGISKPEHVQQVAGW--GADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G-----~TG~~~~~~-~~~~~~l~~v----k~~~~--~Pv~vGfGIst~e~v~~v~~~--GADGvIVGSaiv~ 284 (311)
..++..+| .-|.+..+. .+..++++.+ |...+ +|++.|+=|++|||..-+++. |+||.+=+|.+-|
T Consensus 178 diiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~c~~~~gfygassmer 257 (276)
T COG5564 178 DIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILDRCPGCDGFYGASSMER 257 (276)
T ss_pred ceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHhhCCCCCcccccchhhc
Confidence 55555555 233444432 2233444433 33333 799999999999999888764 6899999999988
Q ss_pred hhh
Q 021527 285 LLG 287 (311)
Q Consensus 285 ~~~ 287 (311)
.-.
T Consensus 258 lp~ 260 (276)
T COG5564 258 LPA 260 (276)
T ss_pred cch
Confidence 654
|
|
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.13 Score=50.00 Aligned_cols=99 Identities=17% Similarity=0.292 Sum_probs=76.0
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
..-|.+.+++.++.|.++|+|++=+-+|-.+ --+.+++|+++.++|++....||
T Consensus 37 ~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~------------------------~a~al~~I~~~~~iPlvADIHFd-- 90 (360)
T PRK00366 37 DTADVEATVAQIKRLARAGCEIVRVAVPDME------------------------AAAALPEIKKQLPVPLVADIHFD-- 90 (360)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEccCCHH------------------------HHHhHHHHHHcCCCCEEEecCCC--
Confidence 3456688999999999999999999866511 12477888989999999988887
Q ss_pred hccCHHHHHHHHHHcCCcEEEec--CCCh--hhHHHHHHHHHHcCCCeEEEeCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVP--DVPL--EETESLQKEAMKNKIELVLFTTP 201 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviip--Dlp~--ee~~~~~~~~~~~gi~~I~lisp 201 (311)
-+..-.+.+.|+|.+=+. .+.- |...++.+.++++|+..=.-++-
T Consensus 91 -----~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~ 139 (360)
T PRK00366 91 -----YRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNA 139 (360)
T ss_pred -----HHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCC
Confidence 345567889999999773 3322 45778999999999976665543
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.064 Score=50.55 Aligned_cols=136 Identities=19% Similarity=0.166 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCCh----HHHHHHHHHHHHcCCC
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADG----PVIQAAATRSLARGTN 123 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDG----p~Iq~a~~~Al~~G~~ 123 (311)
..+.+.++.+++.-...+..=+. |+.+++.++++.++++|+|.|.+-+-+.....|. |.+... ..--.|..
T Consensus 140 ~~~~eiv~~vr~~~~~Pv~vKl~---~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~--~gg~sg~~ 214 (296)
T cd04740 140 EAVAEIVKAVKKATDVPVIVKLT---PNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNV--TGGLSGPA 214 (296)
T ss_pred HHHHHHHHHHHhccCCCEEEEeC---CCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCC--cceecCcc
Confidence 34666777776653333433343 5566788999999999999998732221111010 111000 00001111
Q ss_pred -HHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-------CCChhhHHHHHHHHHHcCCC
Q 021527 124 -FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-------DVPLEETESLQKEAMKNKIE 194 (311)
Q Consensus 124 -~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-------Dlp~ee~~~~~~~~~~~gi~ 194 (311)
..-.++.++++++.+++||+..+-.. . -+.+.++.++|+|+|-+. +++-+-...+.+.+.++|..
T Consensus 215 ~~~~~~~~i~~i~~~~~ipii~~GGI~-----~-~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~ 287 (296)
T cd04740 215 IKPIALRMVYQVYKAVEIPIIGVGGIA-----S-GEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIK 287 (296)
T ss_pred cchHHHHHHHHHHHhcCCCEEEECCCC-----C-HHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCC
Confidence 11235788889888899999876321 1 234555557999998873 33322234455556666654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK09490 metH B12-dependent methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.22 Score=55.84 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=105.8
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
|++...+.++.+.+.|||+|-+|. ..|.-|+.. .+ +.++..+..+++.+++||.+.++-
T Consensus 382 d~~~al~~A~~qve~GA~iIDVn~--g~~~id~~e---em----------~rvv~~i~~~~~~~~vPlsIDS~~------ 440 (1229)
T PRK09490 382 DYDEALDVARQQVENGAQIIDINM--DEGMLDSEA---AM----------VRFLNLIASEPDIARVPIMIDSSK------ 440 (1229)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC--CCCCCCHHH---HH----------HHHHHHHHhhhccCCceEEEeCCc------
Confidence 347889999999999999999994 223334321 11 233455555555578999998763
Q ss_pred CHHHHHHHHHHc--CCcEEEecCCChhh----HHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHH---HHh--C-Cc
Q 021527 155 GVDNFMSTVRDI--GIRGLVVPDVPLEE----TESLQKEAMKNKIELVLFTT-----PTTPTDRMKAI---VEA--S-EG 217 (311)
Q Consensus 155 g~~~fi~~~~~a--GadGviipDlp~ee----~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i---~~~--a-~g 217 (311)
-+-++.+.++ |.+ ||.|...++ ..+..+.+++||..+|.+.. |.|.++|++.. .+. . .|
T Consensus 441 --~~ViEaaLk~~~G~~--IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t~e~r~~ia~r~~~~~~~~~G 516 (1229)
T PRK09490 441 --WEVIEAGLKCIQGKG--IVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRAYDILTEEVG 516 (1229)
T ss_pred --HHHHHHHHhhcCCCC--EEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 2345555554 654 466666532 44678889999999888764 66766666331 111 1 23
Q ss_pred ----eEEEEecCC--ccCCCCC--CCchHHHHHHHHhhcC-CCcEEEe-----eCCCCHHHHHHH---------HHcCCc
Q 021527 218 ----FVYLVSSIG--VTGARAS--ISGHVQTLLREIKESS-TKPVAVG-----FGISKPEHVQQV---------AGWGAD 274 (311)
Q Consensus 218 ----fiY~vs~~G--~TG~~~~--~~~~~~~~l~~vk~~~-~~Pv~vG-----fGIst~e~v~~v---------~~~GAD 274 (311)
-||+-.... .||.... ...+..+.++.+|+.. ++.+.+| ||...++.++++ ..+|-|
T Consensus 517 i~~~dIi~Dplv~~v~t~~ee~~~~~~~~leair~ik~~~P~~~~~~GlSNiSFgl~g~~~~R~~lns~FL~~a~~aGld 596 (1229)
T PRK09490 517 FPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPHAKISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKAGMD 596 (1229)
T ss_pred CCHHHEEEcCCcceeecChHHHHHHHHHHHHHHHHHHHHCCCCcEEEeeccccccCCCCCchHHHHHHHHHHHHHHcCcc
Confidence 355533222 2432211 1123345566666654 4557765 787322223333 577888
Q ss_pred EEEEhhH
Q 021527 275 GVIVGSA 281 (311)
Q Consensus 275 GvIVGSa 281 (311)
.+||=..
T Consensus 597 ~aIvnp~ 603 (1229)
T PRK09490 597 MGIVNAG 603 (1229)
T ss_pred hhhcCcc
Confidence 8777543
|
|
| >PRK13384 delta-aminolevulinic acid dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=1 Score=43.26 Aligned_cols=154 Identities=15% Similarity=0.265 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC-CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc-EEEEe-
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY-SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP-IALFT- 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf-sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP-iilm~- 146 (311)
+...+.++.+.+.|+..+-| |+|- .|+.. ||++.+ .|+.+|+.+ | +++++
T Consensus 61 d~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~------------------air~iK~~~--pdl~vi~D 120 (322)
T PRK13384 61 SALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLAR------------------MVRTIKAAV--PEMMVIPD 120 (322)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHHH------------------HHHHHHHHC--CCeEEEee
Confidence 46889999999999998876 7764 33332 343332 455566553 2 33332
Q ss_pred -----cCc----chhccC-H------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC-------
Q 021527 147 -----YYN----PILKRG-V------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT------- 200 (311)
Q Consensus 147 -----Y~n----~i~~~g-~------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis------- 200 (311)
|.. .+...| + +...+. .+++|+|-|--.|.=.......++.+.++|+..+..++
T Consensus 121 VcLc~YT~hGHcGil~~g~i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS 200 (322)
T PRK13384 121 ICFCEYTDHGHCGVLHNDEVDNDATVENLVKQSVTAAKAGADMLAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFAS 200 (322)
T ss_pred eecccCCCCCceeeccCCcCccHHHHHHHHHHHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCCceeehhHhhhh
Confidence 211 111122 1 223332 36799999766687767788889999999996665433
Q ss_pred ------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE
Q 021527 201 ------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV 255 (311)
Q Consensus 201 ------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v 255 (311)
|....|-+++... ..+|...++=.- .+ ...+.|+++|+.+++|+++
T Consensus 201 ~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKP-------al--~YLDIi~~~k~~~~lPvaa 271 (322)
T PRK13384 201 SFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKP-------GT--PYLDVLSRLRQETHLPLAA 271 (322)
T ss_pred hhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcC-------Cc--hHHHHHHHHHhccCCCEEE
Confidence 2222333433322 256666554111 11 2568899999999999954
Q ss_pred eeCCC
Q 021527 256 GFGIS 260 (311)
Q Consensus 256 GfGIs 260 (311)
.-||
T Consensus 272 -YqVS 275 (322)
T PRK13384 272 -YQVG 275 (322)
T ss_pred -EEch
Confidence 4443
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.49 Score=45.12 Aligned_cols=134 Identities=13% Similarity=0.139 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc---CCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG---VPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG---~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
-+..+++.+.-...++.=+-.||-+.....+.++.++++||-.|.|- .|-.--...|..+ +..++.
T Consensus 67 ~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~l-----------v~~ee~ 135 (292)
T PRK11320 67 LIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEI-----------VSQEEM 135 (292)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcc-----------cCHHHH
Confidence 33333333333456777778899999999999999999999999993 1111111122111 233333
Q ss_pred HHHHHHhhc-cCCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE
Q 021527 128 LSMLKEVVP-QMSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 128 ~~~i~~ir~-~~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~ 197 (311)
.+-|+..++ +.+.+++++.-.+.....|+++-+++ ..++|||++.++-+. ..++++..+++.+..++.
T Consensus 136 ~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~--~~~~i~~~~~~~~~Pl~~ 207 (292)
T PRK11320 136 VDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT--ELEMYRRFADAVKVPILA 207 (292)
T ss_pred HHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC--CHHHHHHHHHhcCCCEEE
Confidence 333333332 23567888765555556788888875 477999999888543 334455555555555433
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.13 Score=48.19 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=60.9
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILK 153 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~ 153 (311)
.+.+.+.+.++.+.+.|+|+|||.+ +.|...+ .+. -+.+.+.+.++++++|+.+++|+.+-.-.+ ...
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~--~cP~~~~-------~~~--~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~-~~~ 175 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNL--SCPNVGG-------GRQ--LGQDPEAVANLLKAVKAAVDIPLLVKLSPY-FDL 175 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEc--CCCCCCC-------Ccc--cccCHHHHHHHHHHHHHccCCCEEEEeCCC-CCH
Confidence 3668999999999999999999953 2332221 000 123455667889999988899988863211 000
Q ss_pred cCHHHHHHHHHHcCCcEEEecC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPD 175 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipD 175 (311)
-...++++.+.++|+|++.++.
T Consensus 176 ~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 176 EDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEEEc
Confidence 0235677888999999999863
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.82 Score=47.88 Aligned_cols=193 Identities=13% Similarity=0.143 Sum_probs=106.8
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH-HHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA-ILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~-~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
..++++...+.|+|.+=+-+.-..| +-++.+. .-++++.+++..-.+|.++. | -..+
T Consensus 12 ~~eda~~a~~~gaD~iGfIf~~~Sp----------------R~V~~~~~a~~i~~~l~~~~v~~VgVfv--~----~~~~ 69 (610)
T PRK13803 12 DSALISKAVDMLPDFIGFIFYEKSP----------------RFVGNKFLAPNLEKAIRKAGGRPVGVFV--N----ESAK 69 (610)
T ss_pred cHHHHHHHHHcCCCEEEEEecCCCC----------------CCCCHHHHHHHHHHhCCCCCCCEEEEEe--C----CCHH
Confidence 3678888899999998775322222 1133333 33455555432112566654 3 2345
Q ss_pred HHHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHcCCCeEEEeCCCCh--HHHHHHHHHhCCceEEEEec---CCccCCC
Q 021527 158 NFMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKNKIELVLFTTPTTP--TDRMKAIVEASEGFVYLVSS---IGVTGAR 231 (311)
Q Consensus 158 ~fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~gi~~I~lisp~t~--~eri~~i~~~a~gfiY~vs~---~G~TG~~ 231 (311)
+..+.+.+.+.|.+=++. .+.+ ..++.+.+++.+++.+..+..... .+.+.++...++ ++.+-+. .|.||.
T Consensus 70 ~i~~~~~~~~ld~vQLHG~e~~~-~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d-~~LlDs~~~~~GGtG~- 146 (610)
T PRK13803 70 AMLKFSKKNGIDFVQLHGAESKA-EPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVK-YFLFDNKTKIYGGSGK- 146 (610)
T ss_pred HHHHHHHhcCCCEEEECCCCCcc-cHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCC-EEEEcCCCCCCCCCCC-
Confidence 566667889999988874 2211 133445555556666654433221 122333322122 2223232 344543
Q ss_pred CCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCc--EEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GAD--GVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GAD--GvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.++.+ .++.+ ....|+++.+||+ |||+.++++. ..+ ||=|=|.+...- .....+++++|++.+|.
T Consensus 147 -~fdw~---~~~~~--~~~~p~iLAGGL~-peNV~~ai~~~~p~~~gVDvsSGvE~~p-----G~KD~~ki~~fi~~~k~ 214 (610)
T PRK13803 147 -SFDWE---KFYNY--NFKFPFFLSGGLS-PTNFDRIINLTHPQILGIDVSSGFEDSP-----GNKKLTLLKSFITNVKK 214 (610)
T ss_pred -ccChH---Hhhhc--ccCCcEEEEeCCC-HHHHHHHHhhhCCCceEEEccCcccCCC-----CCcCHHHHHHHHHHHHH
Confidence 34432 23332 1256999999996 8999998863 345 887767665321 12346888999998876
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.54 Score=48.00 Aligned_cols=41 Identities=17% Similarity=0.437 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 238 VQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 238 ~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
..+.++++|+.. ++||++| +|.|+++++.+.++|||++.||
T Consensus 269 ~~~~i~~ik~~~~~~~v~aG-~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 269 QIDMIKKLKSNYPHVDIIAG-NVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHhhCCCceEEEC-CcCCHHHHHHHHHcCCCEEEEC
Confidence 457899999875 7898776 6778999999999999999986
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.045 Score=50.80 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=49.6
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFM 160 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi 160 (311)
..++.|.+.|+|.+ .|.-.|.-.| .|..- .+.++.++++.++||++-+- .+..+.+
T Consensus 135 ~~ar~l~~~G~~~v---mPlg~pIGsg------------~Gi~~---~~~I~~I~e~~~vpVI~egG------I~tpeda 190 (248)
T cd04728 135 VLAKRLEDAGCAAV---MPLGSPIGSG------------QGLLN---PYNLRIIIERADVPVIVDAG------IGTPSDA 190 (248)
T ss_pred HHHHHHHHcCCCEe---CCCCcCCCCC------------CCCCC---HHHHHHHHHhCCCcEEEeCC------CCCHHHH
Confidence 56667777778877 6666666655 24422 35667777778899998753 2345678
Q ss_pred HHHHHcCCcEEEec
Q 021527 161 STVRDIGIRGLVVP 174 (311)
Q Consensus 161 ~~~~~aGadGviip 174 (311)
..+.+.|+||+++.
T Consensus 191 ~~AmelGAdgVlV~ 204 (248)
T cd04728 191 AQAMELGADAVLLN 204 (248)
T ss_pred HHHHHcCCCEEEEC
Confidence 88999999999985
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.12 Score=49.73 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCH----
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNF---- 124 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~---- 124 (311)
.+.+.++++++.-+..++..+.++ .+...+.++.|+++|+|.|.+-.-+..+..|- .. ....+..|.+.
T Consensus 152 ~~~eil~~v~~~~~iPV~vKl~p~---~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~---~~-~~~~~~~glsg~~~~ 224 (334)
T PRK07565 152 RYLDILRAVKSAVSIPVAVKLSPY---FSNLANMAKRLDAAGADGLVLFNRFYQPDIDL---ET-LEVVPGLVLSTPAEL 224 (334)
T ss_pred HHHHHHHHHHhccCCcEEEEeCCC---chhHHHHHHHHHHcCCCeEEEECCcCCCCcCh---hh-cccccCCCCCCchhh
Confidence 356667777766567788888654 44577889999999999998854442222220 00 00001112211
Q ss_pred HHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 125 NAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
...++++.++++.+++||+..|=.. . .+.+.++..+|||+|-+.
T Consensus 225 ~~al~~v~~~~~~~~ipIig~GGI~-----s-~~Da~e~l~aGA~~V~v~ 268 (334)
T PRK07565 225 RLPLRWIAILSGRVGADLAATTGVH-----D-AEDVIKMLLAGADVVMIA 268 (334)
T ss_pred hHHHHHHHHHHhhcCCCEEEECCCC-----C-HHHHHHHHHcCCCceeee
Confidence 2335678888888899998865211 1 234444556999998885
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.085 Score=48.64 Aligned_cols=98 Identities=19% Similarity=0.119 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCCh-HHHHHHHHHHHHcCCCHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADG-PVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDG-p~Iq~a~~~Al~~G~~~~~ 126 (311)
..+.+..+.+++. .+.+..=+-+|+++ ..+.+.++.++++|+|+|.+.--+ -| |. +
T Consensus 121 ~~l~~iv~av~~~-~~PVsvKiR~~~~~-~~~~~~a~~l~~aGad~i~Vd~~~-----~g~~~---a------------- 177 (231)
T TIGR00736 121 ELLKEFLTKMKEL-NKPIFVKIRGNCIP-LDELIDALNLVDDGFDGIHVDAMY-----PGKPY---A------------- 177 (231)
T ss_pred HHHHHHHHHHHcC-CCcEEEEeCCCCCc-chHHHHHHHHHHcCCCEEEEeeCC-----CCCch---h-------------
Confidence 4577777777744 45677777888764 467899999999999999994222 12 11 1
Q ss_pred HHHHHHHhhccCC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 127 ILSMLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 127 ~~~~i~~ir~~~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
-++.|+++++.++ +||+..+- +. ..++..+.+ ++|+|||.+.
T Consensus 178 ~~~~I~~i~~~~~~ipIIgNGg---I~--s~eda~e~l-~~GAd~Vmvg 220 (231)
T TIGR00736 178 DMDLLKILSEEFNDKIIIGNNS---ID--DIESAKEML-KAGADFVSVA 220 (231)
T ss_pred hHHHHHHHHHhcCCCcEEEECC---cC--CHHHHHHHH-HhCCCeEEEc
Confidence 1468899998874 99998752 32 234444444 5899999886
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.14 Score=49.59 Aligned_cols=97 Identities=12% Similarity=0.278 Sum_probs=74.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
.-|.+.+++.++.|+++|+|++=+-+|-.+ + -+.+++|++..++|++....||
T Consensus 30 T~Dv~atv~QI~~L~~aGceiVRvavp~~~---------~---------------A~al~~I~~~~~iPlVADIHFd--- 82 (346)
T TIGR00612 30 TIDIDSTVAQIRALEEAGCDIVRVTVPDRE---------S---------------AAAFEAIKEGTNVPLVADIHFD--- 82 (346)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEcCCCHH---------H---------------HHhHHHHHhCCCCCEEEeeCCC---
Confidence 456788999999999999999999866511 1 2467788889999999988877
Q ss_pred ccCHHHHHHHHHHcCCcEEEec--CCCh-hhHHHHHHHHHHcCCCeEEEeC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVP--DVPL-EETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviip--Dlp~-ee~~~~~~~~~~~gi~~I~lis 200 (311)
.+..-.+.+.|+|.+=+. .+.. |...++.+.|+++|+..=.-++
T Consensus 83 ----~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 83 ----YRLAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred ----cHHHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 234456788899998773 3433 3477899999999997666554
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.087 Score=48.96 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=50.4
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFM 160 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi 160 (311)
..+++|.+.|+|.| .|.-.|.-.| .|..- .+.++.+++..++||++.+- .+..+.+
T Consensus 135 ~~ak~l~~~G~~~v---mPlg~pIGsg------------~gi~~---~~~i~~i~e~~~vpVIveaG------I~tpeda 190 (250)
T PRK00208 135 VLAKRLEEAGCAAV---MPLGAPIGSG------------LGLLN---PYNLRIIIEQADVPVIVDAG------IGTPSDA 190 (250)
T ss_pred HHHHHHHHcCCCEe---CCCCcCCCCC------------CCCCC---HHHHHHHHHhcCCeEEEeCC------CCCHHHH
Confidence 66777777888888 6766676655 24322 34577777777899999752 2345678
Q ss_pred HHHHHcCCcEEEec
Q 021527 161 STVRDIGIRGLVVP 174 (311)
Q Consensus 161 ~~~~~aGadGviip 174 (311)
..+.+.|+||+++.
T Consensus 191 ~~AmelGAdgVlV~ 204 (250)
T PRK00208 191 AQAMELGADAVLLN 204 (250)
T ss_pred HHHHHcCCCEEEEC
Confidence 88999999999995
|
|
| >PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.075 Score=49.33 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH--------HHHHHH----h---
Q 021527 158 NFMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDR--------MKAIVE----A--- 214 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~~----~--- 214 (311)
--...+++.|++.+++..- ..+....-...+.++|+.+|+-+.-+ .++| +....+ .
T Consensus 75 vS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~-~~~~~~~~~~~~l~~Ql~~~l~~i~~ 153 (244)
T PF00121_consen 75 VSAEMLKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGET-LEERESGKTKEVLKRQLKSILKGIDK 153 (244)
T ss_dssp HBHHHHHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSB-HHHHHTTCHHHHHHHHHHHHHTTSSG
T ss_pred hHHHHHHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccc-hhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 3456788999999999742 12233444566788999988877653 2222 211111 1
Q ss_pred ---CCceEEEEecCC-ccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEh
Q 021527 215 ---SEGFVYLVSSIG-VTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQVA-GWGADGVIVG 279 (311)
Q Consensus 215 ---a~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVG 279 (311)
..-.|-|.+.-- .||.. ..+....+..+.+|+. .+++|+.|++|+ ++++.+++ ..+.||+-||
T Consensus 154 ~~~~~~iIAYEPvWAIGtG~~-as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~-~~N~~~l~~~~~iDG~LVG 231 (244)
T PF00121_consen 154 EELKNIIIAYEPVWAIGTGKT-ASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVN-PENAAELLSQPDIDGVLVG 231 (244)
T ss_dssp GGGTCEEEEEEEGGGTSSSS--CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSES-TTTHHHHHTSTT-SEEEES
T ss_pred ccccceEEEEcccccccCCCC-CCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCC-cccHHHHhcCCCCCEEEEc
Confidence 123344433221 34543 2344566666666664 168999999998 58888775 5568999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
++-.+
T Consensus 232 ~asl~ 236 (244)
T PF00121_consen 232 GASLK 236 (244)
T ss_dssp GGGGS
T ss_pred hhhhc
Confidence 99876
|
3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A .... |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.047 Score=53.00 Aligned_cols=105 Identities=13% Similarity=0.047 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcC-----CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCC-------------CChHHH
Q 021527 49 GLAETFTRLKKQG-----KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPL-------------ADGPVI 110 (311)
Q Consensus 49 ~i~~~f~~~~~~~-----~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~-------------aDGp~I 110 (311)
.+.+.++++++.- +..++.=+.++. +.+...++++.++++|+|.|.+-.-+.++. ..|+.+
T Consensus 193 ~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~-~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~ 271 (344)
T PRK05286 193 ALDELLAALKEAQAELHGYVPLLVKIAPDL-SDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPL 271 (344)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEeCCCC-CHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHH
Confidence 4556666666532 256666666543 335789999999999999999977664432 122322
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe
Q 021527 111 QAAATRSLARGTNFNAILSMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV 173 (311)
Q Consensus 111 q~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii 173 (311)
... .+++++++++++ ++||+..|=.. . .+.+.++..+|||.|-+
T Consensus 272 ~~~-------------~l~~v~~l~~~~~~~ipIig~GGI~-----s-~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 272 FER-------------STEVIRRLYKELGGRLPIIGVGGID-----S-AEDAYEKIRAGASLVQI 317 (344)
T ss_pred HHH-------------HHHHHHHHHHHhCCCCCEEEECCCC-----C-HHHHHHHHHcCCCHHHH
Confidence 221 356888888877 79998875221 1 23444455589997755
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.15 Score=49.73 Aligned_cols=42 Identities=33% Similarity=0.448 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCCcEEE---eeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 238 VQTLLREIKESSTKPVAV---GFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~v---GfGIst~e~v~~v~~~GADGvIVGS 280 (311)
+.+.++.+++.+++||++ |+|.+ .+.++.+.+.|+|+++|+.
T Consensus 174 ~le~i~~i~~~~~vPVivK~~g~g~s-~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 174 WLDNIAEIVSALPVPVIVKEVGFGIS-KETAKRLADAGVKAIDVAG 218 (352)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCc-HHHHHHHHHcCCCEEEECC
Confidence 347788888888999997 88875 8999999999999999954
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.6 Score=45.25 Aligned_cols=166 Identities=10% Similarity=0.083 Sum_probs=93.5
Q ss_pred ChhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 46 PTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 46 ~m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
++.++.+..+.. ++..+..++.+|.-+ .+.++...++|+|.|-+.+.-++ - +
T Consensus 63 ~~e~i~~~~~~~---~~~~~~~ll~pg~~~----~~dl~~a~~~gvd~iri~~~~~e----~-----------------d 114 (333)
T TIGR03217 63 DLEYIEAAADVV---KRAKVAVLLLPGIGT----VHDLKAAYDAGARTVRVATHCTE----A-----------------D 114 (333)
T ss_pred hHHHHHHHHHhC---CCCEEEEEeccCccC----HHHHHHHHHCCCCEEEEEeccch----H-----------------H
Confidence 355666555543 233456677777654 46688889999999999865443 1 1
Q ss_pred HHHHHHHHhhcc-CCCcEEEE-ecCcchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-C--C
Q 021527 126 AILSMLKEVVPQ-MSCPIALF-TYYNPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-K--I 193 (311)
Q Consensus 126 ~~~~~i~~ir~~-~~iPiilm-~Y~n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-g--i 193 (311)
...+.++.+|+. ..+=+.+| ++ .+..+ +.++.+.+.|++.|.+.| +.+++..++...++++ + +
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s~-----~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i 189 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMSH-----MTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPET 189 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEccc-----CCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 223455555543 22222232 32 23334 445567889999999998 5678888888887764 3 3
Q ss_pred CeEEEeCCCChHHHHHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHHh
Q 021527 194 ELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 194 ~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk 246 (311)
.+-+-...+..-.-...++....|..++ .|..| -|.+.+. ..++.++.-++
T Consensus 190 ~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G-~G~~aGN-~~~E~lv~~l~ 241 (333)
T TIGR03217 190 QVGFHAHHNLSLAVANSIAAIEAGATRIDASLRG-LGAGAGN-APLEVFVAVLD 241 (333)
T ss_pred eEEEEeCCCCchHHHHHHHHHHhCCCEEEeeccc-ccccccC-ccHHHHHHHHH
Confidence 3333333333333333444455677677 34444 3444332 33445555443
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.054 Score=53.17 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHcC-CCeEEE-eCCCChHHHHHH-HHHhCCceEEEEecCCccCCCC-------CCCchHHHHHHH----
Q 021527 179 EETESLQKEAMKNK-IELVLF-TTPTTPTDRMKA-IVEASEGFVYLVSSIGVTGARA-------SISGHVQTLLRE---- 244 (311)
Q Consensus 179 ee~~~~~~~~~~~g-i~~I~l-isp~t~~eri~~-i~~~a~gfiY~vs~~G~TG~~~-------~~~~~~~~~l~~---- 244 (311)
|+..++.+.+++.+ =.+|.+ +......+.+.. .++....||-+-...|.||+.. ++|. ..-+.+
T Consensus 188 edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~--~~~l~~a~~~ 265 (368)
T PF01645_consen 188 EDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPT--EYALARAHQA 265 (368)
T ss_dssp HHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcH--HHHHHHHHHH
Confidence 55666667776665 234432 233344555544 3344456666656777888742 2221 222333
Q ss_pred Hhhc-C--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 245 IKES-S--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 245 vk~~-~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+++. . .+.+++.+|+.|+.|+.+.+-.|||.|-+|+++.-.++
T Consensus 266 L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlG 311 (368)
T PF01645_consen 266 LVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALG 311 (368)
T ss_dssp HHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT
T ss_pred HHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcc
Confidence 3332 1 47899999999999999999999999999999886553
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.82 Score=44.39 Aligned_cols=152 Identities=11% Similarity=0.120 Sum_probs=86.7
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP 141 (311)
..+..++.+|.-+ .+.++...++|+|.|-+.+.-++. +...+.++.+|+. ..+-
T Consensus 78 ~~~~~ll~pg~~~----~~dl~~a~~~gvd~iri~~~~~e~---------------------~~~~~~i~~ak~~G~~v~ 132 (337)
T PRK08195 78 AKIAALLLPGIGT----VDDLKMAYDAGVRVVRVATHCTEA---------------------DVSEQHIGLARELGMDTV 132 (337)
T ss_pred CEEEEEeccCccc----HHHHHHHHHcCCCEEEEEEecchH---------------------HHHHHHHHHHHHCCCeEE
Confidence 4466677666554 366788889999999997544431 1223455555543 2322
Q ss_pred EEEE-ecCcchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHH
Q 021527 142 IALF-TYYNPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 142 iilm-~Y~n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~ 210 (311)
+.+| ++. +..+ ++++.+.+.|+|.+.+.| +.+++..++...++++ ++.+-+-...+..-.-...
T Consensus 133 ~~l~~a~~-----~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANs 207 (337)
T PRK08195 133 GFLMMSHM-----APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANS 207 (337)
T ss_pred EEEEeccC-----CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHH
Confidence 3333 222 2333 455677889999999998 5578888888887764 3444343444333333334
Q ss_pred HHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHh
Q 021527 211 IVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 211 i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk 246 (311)
++....|..++- |..| -|.+.+. ..++.++.-+.
T Consensus 208 laAi~aGa~~iD~Sl~G-lG~~aGN-~~tE~lv~~L~ 242 (337)
T PRK08195 208 LAAVEAGATRIDGSLAG-LGAGAGN-TPLEVLVAVLD 242 (337)
T ss_pred HHHHHhCCCEEEecChh-hcccccC-ccHHHHHHHHH
Confidence 444556776773 4444 3444443 33445555443
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.1 Score=50.06 Aligned_cols=106 Identities=7% Similarity=0.011 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHcC--CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 48 VGLAETFTRLKKQG--KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 48 ~~i~~~f~~~~~~~--~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
..+.+.++.+++.- ...+..=+-.|+.+.+.+.++++.++++|+|.|.+--=.....+.||. .+
T Consensus 117 ~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~------------~~-- 182 (312)
T PRK10550 117 ELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEH------------IN-- 182 (312)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCc------------cc--
Confidence 34666777766542 245666667787666678999999999999999994111111111110 12
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
.+.++++++.+++||+..|-.+ ..++..+.+.+.|+|||.+.
T Consensus 183 --~~~i~~ik~~~~iPVi~nGdI~-----t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 183 --WQAIGEIRQRLTIPVIANGEIW-----DWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred --HHHHHHHHhhcCCcEEEeCCcC-----CHHHHHHHHhccCCCEEEEc
Confidence 3688899988999999976432 23555555667899999995
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.47 Score=44.21 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=64.7
Q ss_pred EEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 66 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 66 i~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
-.+.-.|.++.+.+.+.++..++.|+|.+.+--||-.+. +-+++++..++|.+.+++|+++
T Consensus 68 ~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~------------------~~~~~~~~~~~ia~~~~~pi~i- 128 (281)
T cd00408 68 PVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKP------------------SQEGIVAHFKAVADASDLPVIL- 128 (281)
T ss_pred eEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCC------------------CHHHHHHHHHHHHhcCCCCEEE-
Confidence 345666888899999999999999999999998885542 2235567778888778999988
Q ss_pred ecCcchh---ccCHHHHHHHHHH-cCCcEEEecCCChhhHHHHH
Q 021527 146 TYYNPIL---KRGVDNFMSTVRD-IGIRGLVVPDVPLEETESLQ 185 (311)
Q Consensus 146 ~Y~n~i~---~~g~~~fi~~~~~-aGadGviipDlp~ee~~~~~ 185 (311)
|.+|.. .+.. ++++++.+ -.+-|+=......+...+++
T Consensus 129 -Yn~P~~tg~~l~~-~~~~~L~~~~~v~giK~s~~d~~~~~~~~ 170 (281)
T cd00408 129 -YNIPGRTGVDLSP-ETIARLAEHPNIVGIKDSSGDLDRLTRLI 170 (281)
T ss_pred -EECccccCCCCCH-HHHHHHhcCCCEEEEEeCCCCHHHHHHHH
Confidence 555542 3333 35555554 22444444433333333343
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=1 Score=41.71 Aligned_cols=176 Identities=17% Similarity=0.187 Sum_probs=102.1
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
-...|+.+...++++.+.+ -++.+=+|.|- ++ ..| .++++++++..+ +|++..-+-
T Consensus 17 aLD~~~~~~~~~~~~~~~~-~~~~~Kvg~~l---~~-------------~~g------~~~~~el~~~~~-~VflDlK~~ 72 (240)
T COG0284 17 ALDVPTEEEALAFVDKLGP-TVDFVKVGKPL---VA-------------FFG------ADILEELKARGK-KVFLDLKLA 72 (240)
T ss_pred EECCCCHHHHHHHHHHhhc-cccEEEEchHH---HH-------------hcc------HHHHHHHHHhCC-ceEEeeecc
Confidence 3355667788899999988 69999998554 11 112 236777776554 888876544
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCeEEEeCCCCh-H--------------HHHHHHHH
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIELVLFTTPTTP-T--------------DRMKAIVE 213 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~I~lisp~t~-~--------------eri~~i~~ 213 (311)
+|-.+ ....++.+.+.|+|.+.++-.+= +-...+.+...++|- .++.++-.|+ . +.+.++++
T Consensus 73 DIpnT-~~~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~-~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~ 150 (240)
T COG0284 73 DIPNT-VALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGP-FVLAVTSLTSMGELQLAELGINSSLEEQVLRLAK 150 (240)
T ss_pred cchHH-HHHHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCc-eEEEEEeCCCchhhhhhhccccchHHHHHHHHHH
Confidence 44322 24566778889999999986653 335557777777763 3433332222 1 22223333
Q ss_pred hCC--ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCC------HHH---HHHHHHcCCcEEEEhhH
Q 021527 214 ASE--GFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISK------PEH---VQQVAGWGADGVIVGSA 281 (311)
Q Consensus 214 ~a~--gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst------~e~---v~~v~~~GADGvIVGSa 281 (311)
.+. |++-.+ ++ + +.++++|+.++ --.++-=||.- ... -.+....|+|-+|||=.
T Consensus 151 ~~~~~G~dgvv-----~~------~---~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~ 216 (240)
T COG0284 151 LAGEAGLDGVV-----CS------A---EEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRP 216 (240)
T ss_pred HhccCCceEEE-----cC------H---HHHHHHHHhcCCCcEEECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChh
Confidence 332 333222 11 1 34666666653 11335444443 111 23445589999999999
Q ss_pred hhch
Q 021527 282 MVKL 285 (311)
Q Consensus 282 iv~~ 285 (311)
|+..
T Consensus 217 I~~a 220 (240)
T COG0284 217 ITQA 220 (240)
T ss_pred hhcC
Confidence 8874
|
|
| >PLN02540 methylenetetrahydrofolate reductase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.18 Score=52.20 Aligned_cols=187 Identities=16% Similarity=0.205 Sum_probs=113.7
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM- 138 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~- 138 (311)
..--++|+++-+-+.+...+.+..+.+.|+.-|-+ | ||..+|..-+. -+.+++ ...++|+.+|+..
T Consensus 58 Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrG----Dpp~~~d~~~~-----~~g~F~--~A~dLV~~Ir~~~g 126 (565)
T PLN02540 58 CVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRG----DPPHGQDKFVQ-----VEGGFA--CALDLVKHIRSKYG 126 (565)
T ss_pred CCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECC----CCCCCCCCcCC-----CCCCcc--cHHHHHHHHHHhCC
Confidence 34578999999999999999999999999997755 5 33333221000 001222 2456777777653
Q ss_pred -CCcEEEEecCc--chh-cc-------CHH---HHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcC--CCeEEEeC
Q 021527 139 -SCPIALFTYYN--PIL-KR-------GVD---NFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNK--IELVLFTT 200 (311)
Q Consensus 139 -~iPiilm~Y~n--~i~-~~-------g~~---~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~g--i~~I~lis 200 (311)
..-|.+-+|-. +-. .. ..+ +++++=.++|||- ++.-+=+ +...++.+.|++.| +..++-+.
T Consensus 127 d~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlfFD~d~f~~f~~~~r~~Gi~vPIipGIm 205 (565)
T PLN02540 127 DYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADL-IITQLFYDTDIFLKFVNDCRQIGITCPIVPGIM 205 (565)
T ss_pred CCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCCE-EeeccccCHHHHHHHHHHHHhcCCCCCEEeeec
Confidence 25577777743 110 01 111 2333335689995 4543333 44678999999998 56777788
Q ss_pred CCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 201 PTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 201 p~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
|-++...+..+.+. .|. .+|..+.+.++.++..-..-..+|.-+. .|+++++++.|++|+
T Consensus 206 PI~S~k~l~r~~~l-------------~Gi--~IP~~i~~rLe~~kddde~v~~~Gieia-~e~~~~L~~~Gv~Gi 265 (565)
T PLN02540 206 PINNYKGFLRMTGF-------------CKT--KIPAEITAALEPIKDNDEAVKAYGIHLG-TEMCKKILAHGIKGL 265 (565)
T ss_pred ccCCHHHHHHHHhc-------------cCC--cCCHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHcCCCEE
Confidence 88877766655441 222 4676555555444322111122456665 599999999999998
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.86 Score=43.32 Aligned_cols=137 Identities=12% Similarity=0.183 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc---CCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG---VPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG---~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
++.+-+...++.+.-...++.=+-.||-+.....+.++.+.++|+..|.|- .|-.--...|..+ +.
T Consensus 58 ~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~l-----------v~ 126 (285)
T TIGR02317 58 LDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKEL-----------VS 126 (285)
T ss_pred HHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccc-----------cC
Confidence 333333333333333556777788899998899999999999999999993 1110011122111 13
Q ss_pred HHHHHHHHHHhhc-cCCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE
Q 021527 124 FNAILSMLKEVVP-QMSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 124 ~~~~~~~i~~ir~-~~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I 196 (311)
.++..+-|+..++ ..+.+++++.-.+.+...|+++-+++ ..++|||++.++-+. ..+++...+++....++
T Consensus 127 ~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~--~~e~i~~~~~~i~~Pl~ 201 (285)
T TIGR02317 127 REEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEALT--SLEEFRQFAKAVKVPLL 201 (285)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCC--CHHHHHHHHHhcCCCEE
Confidence 3333333433333 23457888765565566788888775 477999999998644 22233444455455543
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.64 Score=44.40 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=81.0
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.|-+.--. |.. .-.+.++..++++...+. -++||++-+..+
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~Gst------GE~----------~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~ 87 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTF------GEC----------ATLTWEEKQAFVATVVETVAGRVPVFVGATTL 87 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc------ccc----------hhCCHHHHHHHHHHHHHHhCCCCCEEEEeccC
Confidence 45667899999999999999999884111 111 114566666777766554 358988876543
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec---CCCh--hhHHH-HHHHHHHc-CCCeEEEeCCC-----ChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP---DVPL--EETES-LQKEAMKN-KIELVLFTTPT-----TPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip---Dlp~--ee~~~-~~~~~~~~-gi~~I~lisp~-----t~~eri~~i~~~a~g 217 (311)
... ..-+.++.+.+.|+|++++. -.++ ++..+ |+..++.. ++.++++=.|. .+.+-++++++ -..
T Consensus 88 ~t~--~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~-~pn 164 (309)
T cd00952 88 NTR--DTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ-IPQ 164 (309)
T ss_pred CHH--HHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc-CCC
Confidence 221 12457778899999999883 1222 45555 45556666 57777663442 24566666653 344
Q ss_pred eEE
Q 021527 218 FVY 220 (311)
Q Consensus 218 fiY 220 (311)
++.
T Consensus 165 ivg 167 (309)
T cd00952 165 VVA 167 (309)
T ss_pred EEE
Confidence 443
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.87 Score=42.75 Aligned_cols=209 Identities=21% Similarity=0.346 Sum_probs=108.7
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR----GTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~----G~~~~~~~ 128 (311)
.|.+.|++|+| |..+|+=| .-.++.++++|+|+|-+| |.+ |-+ .+.+ .+++++.+
T Consensus 7 ~l~~~k~~g~k--i~~lTaYD------~~~A~~~d~agvD~iLVG----DSl--gmv-------~~G~~sT~~vtld~mi 65 (261)
T PF02548_consen 7 DLRKMKQKGEK--IVMLTAYD------YPSARIADEAGVDIILVG----DSL--GMV-------VLGYDSTLPVTLDEMI 65 (261)
T ss_dssp HHHHHHHHT----EEEEE--S------HHHHHHHHHTT-SEEEE-----TTH--HHH-------TT--SSSTT--HHHHH
T ss_pred HHHHHHhCCCc--EEEEeccc------HHHHHHHHHcCCCEEEeC----CcH--HHh-------eeCCCCCcCcCHHHHH
Confidence 45555666665 44555433 257788899999999998 321 212 2222 25788888
Q ss_pred HHHHHhhccCCCcEEEEecCcchhc--cCHHHHH----HHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE--eC
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILK--RGVDNFM----STVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF--TT 200 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~--~g~~~fi----~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l--is 200 (311)
...+.+|+-..-++++--. |+.. .+.++-+ +.++++|+|.|-+=-- .+..+..+.+-+.||.++-- ++
T Consensus 66 ~h~~aV~Rga~~~~vv~Dm--Pf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg--~~~~~~i~~l~~~GIPV~gHiGLt 141 (261)
T PF02548_consen 66 YHTKAVRRGAPNAFVVADM--PFGSYQASPEQAVRNAGRLMKEAGADAVKLEGG--AEIAETIKALVDAGIPVMGHIGLT 141 (261)
T ss_dssp HHHHHHHHH-TSSEEEEE----TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBS--GGGHHHHHHHHHTT--EEEEEES-
T ss_pred HHHHHHHhcCCCceEEecC--CcccccCCHHHHHHHHHHHHHhcCCCEEEeccc--hhHHHHHHHHHHCCCcEEEEecCc
Confidence 8889998766555444310 2222 2444433 4456799999976422 26667888888999987643 34
Q ss_pred CCCh------------HHHHHHHHHh------CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCH
Q 021527 201 PTTP------------TDRMKAIVEA------SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP 262 (311)
Q Consensus 201 p~t~------------~eri~~i~~~------a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~ 262 (311)
|.+. .+..+++.+. +.-|..+.- .+|. +.-+.+.+.+++|++ |.|=..
T Consensus 142 PQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE---------~vp~---~la~~It~~l~IPtI-GIGaG~- 207 (261)
T PF02548_consen 142 PQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLE---------CVPA---ELAKAITEALSIPTI-GIGAGP- 207 (261)
T ss_dssp GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEE---------SBBH---HHHHHHHHHSSS-EE-EESS-S-
T ss_pred hhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeee---------cCHH---HHHHHHHHhCCCCEE-ecCCCC-
Confidence 4433 1222223222 333433332 1233 456667788899994 777643
Q ss_pred HHHHHHHHcCCcEEEEhhH-hhchhhhc---------CCchhHHHHHHHHHHHHHhh
Q 021527 263 EHVQQVAGWGADGVIVGSA-MVKLLGEA---------QSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSa-iv~~~~~~---------~~~~~~~~~~~~~~~~l~~~ 309 (311)
++||-|.=+. +.-...+. +..+...+.+.+|.++.+..
T Consensus 208 ---------~cDGQvLV~~DlLG~~~~~~pkf~k~y~~~~~~~~~A~~~y~~~V~~g 255 (261)
T PF02548_consen 208 ---------GCDGQVLVSHDLLGLFTDFPPKFVKQYANLGEEIEEAVKAYANEVKSG 255 (261)
T ss_dssp ---------TSSEEEE-HHHHTTSSSSS--TT---SSTTCSSHHHHHHHHHHHHHTT
T ss_pred ---------CCCceEEeHhhhhcccCCCCCCcHHHHhhHHHHHHHHHHHHHHHHhCC
Confidence 4888776432 22221110 11245577889999988764
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.83 Score=43.50 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=100.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|++.+.+.- -.||..+ .+.+.++++.++++.++++.+-. ..
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~g-G~~~~~~-----------------~~~l~~l~~~i~~~~~l~i~~~~--g~---- 126 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQS-GEDPYYT-----------------DEKIADIIKEIKKELDVAITLSL--GE---- 126 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec-CCCCCCC-----------------HHHHHHHHHHHHccCCceEEEec--CC----
Confidence 456788888888889999998840 0133322 23456677888765555554311 10
Q ss_pred CHHHHHHHHHHcCCcEEEe--------------cCCChhhHHHHHHHHHHcCCCeEE--Ee-CC-CChHHHHH---HHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVV--------------PDVPLEETESLQKEAMKNKIELVL--FT-TP-TTPTDRMK---AIVE 213 (311)
Q Consensus 155 g~~~fi~~~~~aGadGvii--------------pDlp~ee~~~~~~~~~~~gi~~I~--li-sp-~t~~eri~---~i~~ 213 (311)
-.++.++.++++|++.+.+ +....++..+..+.++++|+.... ++ -| .|.+++.. .+.+
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~ 206 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKE 206 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHh
Confidence 1267889999999998876 234446666777888899985332 22 23 34444332 2222
Q ss_pred hCCceEEEEecCCccCCC--CCCC---chHHHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 214 ASEGFVYLVSSIGVTGAR--ASIS---GHVQTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~--~~~~---~~~~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.....+.+......-|+. ...+ .+....++..|... ++|...+.+--.++.-...+.+||+++..
T Consensus 207 l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~ 279 (323)
T PRK07094 207 LDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMP 279 (323)
T ss_pred CCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecC
Confidence 222222222222222221 1111 22344555555543 35655455544466667888999998863
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.4 Score=40.72 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=111.7
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
.+||. ++.+...+++|+|.|=+= |--|---||. + .+..+++.++.|+-+-++.+
T Consensus 19 ~~Pdp---v~aA~~a~~aGAdgITvH-----lReDrRHI~d------------~----Dv~~L~~~~~~~lNlE~a~t-- 72 (234)
T cd00003 19 NYPDP---VEAALLAEKAGADGITVH-----LREDRRHIQD------------R----DVRLLRELVRTELNLEMAPT-- 72 (234)
T ss_pred CCCCH---HHHHHHHHHcCCCEEEec-----CCCCcCcCCH------------H----HHHHHHHHcCCCEEeccCCC--
Confidence 36764 667777888999999883 4445444443 2 44455555567777766543
Q ss_pred hccCHHHHHHHHHHcCCcEEE-ecCCCh--------------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLV-VPDVPL--------------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGvi-ipDlp~--------------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++|++.+.+.--+-+. +||-+- +....+.+.+++.|+.+.+|+.|+ .+.++...+.
T Consensus 73 -----~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~-- 143 (234)
T cd00003 73 -----EEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEV-- 143 (234)
T ss_pred -----HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHh--
Confidence 7899999998876554 465442 235667888999999999999997 4555544443
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhc------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKES------STKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
|..++.-.+|....... .....+.+++++.. .++-|-+|-|.+ .+++..+... +-+-+-||-+|+.
T Consensus 144 GAd~VELhTG~Ya~a~~-~~~~~~el~~i~~aa~~a~~~GL~VnAGHgLn-y~Nv~~i~~ip~i~ElnIGHsiia 216 (234)
T cd00003 144 GADRVELHTGPYANAYD-KAEREAELERIAKAAKLARELGLGVNAGHGLN-YENVKPIAKIPGIAELNIGHAIIS 216 (234)
T ss_pred CcCEEEEechhhhcCCC-chhHHHHHHHHHHHHHHHHHcCCEEecCCCCC-HHHHHHHHhCCCCeEEccCHHHHH
Confidence 33333333343322111 11222335554432 367888999997 7999888643 3577889988775
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.9 Score=42.21 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=80.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHhhcc-CCCcEEEEecCcchhcc
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI----LSMLKEVVPQ-MSCPIALFTYYNPILKR 154 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~----~~~i~~ir~~-~~iPiilm~Y~n~i~~~ 154 (311)
.+.++.+.++|+|.|.+-+|-||. .++ -..|.+.++. .+.++..++. ..+-+.++. ..+.
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~-----~~~------~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed----a~r~ 138 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPI-----HLK------YKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED----ATRT 138 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHH-----HHH------HHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee----cCCC
Confidence 466788889999999998888762 111 1234454444 4455555543 222222221 2222
Q ss_pred CH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecC
Q 021527 155 GV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSI 225 (311)
Q Consensus 155 g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~ 225 (311)
.. .++++.+.+.|+|.+.++| +.+++..++...+++. ++.+-+-...+.--.-...++....|..++- |..
T Consensus 139 ~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~ 218 (363)
T TIGR02090 139 DIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVN 218 (363)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCCCCEEEEEee
Confidence 22 3466678889999999998 4467777777777653 3322222333322222233444456777773 444
Q ss_pred CccCCCCCCCchHHHHHHHHh
Q 021527 226 GVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk 246 (311)
| -|.+.+. ..+++++.-++
T Consensus 219 G-lGeraGN-~~lE~vv~~L~ 237 (363)
T TIGR02090 219 G-IGERAGN-AALEEVVMALK 237 (363)
T ss_pred c-ccccccc-ccHHHHHHHHH
Confidence 4 3444432 23444444443
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.64 Score=47.26 Aligned_cols=67 Identities=31% Similarity=0.375 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.++++.+.+..-.++ ++... -| -...+.+.++.+|+.. ++||++|.++ |+|++..+.++|||++.||
T Consensus 230 ~e~a~~L~~agvdvi-vvD~a--~g----~~~~vl~~i~~i~~~~p~~~vi~g~v~-t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 230 EERAEALVEAGVDVL-VVDTA--HG----HSEGVLDRVREIKAKYPDVQIIAGNVA-TAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHHHHhCCCEE-EEECC--CC----cchhHHHHHHHHHhhCCCCCEEEeccC-CHHHHHHHHHcCCCEEEEC
Confidence 467766666444433 22211 11 1234667899999876 8999887666 5899999999999999986
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.4 Score=44.59 Aligned_cols=145 Identities=12% Similarity=0.173 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE-EEEecCc-chhcc
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI-ALFTYYN-PILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi-ilm~Y~n-~i~~~ 154 (311)
+...++++...++|+|++.+-.+.+|. .- ++ +.++..++. ..-+ +.++|.. |. +
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~lnd~----~n--------------~~---~~v~~ak~~-G~~v~~~i~~t~~p~--~ 151 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALNDV----RN--------------LE---TAVKATKKA-GGHAQVAISYTTSPV--H 151 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcH----HH--------------HH---HHHHHHHHc-CCeEEEEEEeecCCC--C
Confidence 345678888899999999998777763 11 22 234444432 2222 2233432 32 2
Q ss_pred CH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecC
Q 021527 155 GV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSI 225 (311)
Q Consensus 155 g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~ 225 (311)
.. .++++.+.++|+|.+.+.| +.+++..++...+++. ++.+-+-...+.--.-...+++...|..++- |..
T Consensus 152 ~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 231 (448)
T PRK12331 152 TIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAIS 231 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeecc
Confidence 22 3456678889999999998 5567788887777653 5433333333333233334444556766663 333
Q ss_pred CccCCCCCCCchHHHHHHHHhh
Q 021527 226 GVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
| -|.+++ ++.+++++.-++.
T Consensus 232 g-lg~gaG-N~~tE~lv~~L~~ 251 (448)
T PRK12331 232 P-FAGGTS-QPATESMVAALQD 251 (448)
T ss_pred c-cCCCcC-CHhHHHHHHHHHh
Confidence 3 333333 3456666666654
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.3 Score=44.87 Aligned_cols=144 Identities=15% Similarity=0.236 Sum_probs=81.2
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE-EEecC-cchhccCH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA-LFTYY-NPILKRGV 156 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii-lm~Y~-n~i~~~g~ 156 (311)
...+++...++|+|.+.+-.|.||. + ++-..++..++. ...+. ..+|. .|. +..
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd~-------~--------------n~~~~i~~ak~~-G~~v~~~i~~t~~p~--~t~ 152 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALNDI-------R--------------NLEKSIEVAKKH-GAHVQGAISYTVSPV--HTL 152 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCHH-------H--------------HHHHHHHHHHHC-CCEEEEEEEeccCCC--CCH
Confidence 4455788889999999998777761 1 112233333332 11121 12232 231 223
Q ss_pred H---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 157 D---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 157 ~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
+ ++++.+.++|+|.+.+.| +.+++..++...+++. ++.+-+-...+.--.-...++....|..++-+..+.-
T Consensus 153 e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~ 232 (467)
T PRK14041 153 EYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPF 232 (467)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeecccc
Confidence 3 455677889999999998 5567888887777653 5443333333333233344445556776663333333
Q ss_pred CCCCCCCchHHHHHHHHhh
Q 021527 229 GARASISGHVQTLLREIKE 247 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~ 247 (311)
|.+++ ++.+++++.-++.
T Consensus 233 g~gag-N~atE~lv~~L~~ 250 (467)
T PRK14041 233 SMGTS-QPPFESMYYAFRE 250 (467)
T ss_pred CCCCC-ChhHHHHHHHHHh
Confidence 44444 5667777777754
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.11 Score=49.38 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.+.++++|+.+++||++. ++.++++++++.++|+|+++|..
T Consensus 161 ~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~~~G~d~I~v~~ 201 (299)
T cd02809 161 WDDLAWLRSQWKGPLILK-GILTPEDALRAVDAGADGIVVSN 201 (299)
T ss_pred HHHHHHHHHhcCCCEEEe-ecCCHHHHHHHHHCCCCEEEEcC
Confidence 467999999989999887 57889999999999999999954
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.66 Score=52.11 Aligned_cols=179 Identities=18% Similarity=0.208 Sum_probs=105.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc---CCCcEEEEecCcch
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ---MSCPIALFTYYNPI 151 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~---~~iPiilm~Y~n~i 151 (311)
|.+...+.++.+.+.|||+|-+|.- .|.-|+.. +.-+++..|+.+ .++||-+.++-
T Consensus 366 d~~~a~~~A~~qve~GA~iIDVn~~--~~~vd~~e----------------em~rvv~~i~~~~~~~~vPlsIDS~~--- 424 (1178)
T TIGR02082 366 DYDEALDIAKQQVENGAQILDINVD--YGMLDGVA----------------AMKRFLNLLASEPDISTVPLMLDSSE--- 424 (1178)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC--CCCCCHHH----------------HHHHHHHHHHhccCCCCCeEEEeCCc---
Confidence 3478889999999999999999963 23233321 112344445433 48999998763
Q ss_pred hccCHHHHHHHHHHc--CCcEEEecCCChh----hHHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHHHH---h--C
Q 021527 152 LKRGVDNFMSTVRDI--GIRGLVVPDVPLE----ETESLQKEAMKNKIELVLFTT-----PTTPTDRMKAIVE---A--S 215 (311)
Q Consensus 152 ~~~g~~~fi~~~~~a--GadGviipDlp~e----e~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i~~---~--a 215 (311)
-+-++.+.++ |.+ ||.|...+ ...++.+.++++|..+|.+.. |.|.++|++...+ . .
T Consensus 425 -----~~v~eaaLk~~~G~~--IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e~r~~i~~~~~~~~~~ 497 (1178)
T TIGR02082 425 -----WAVLEAGLKCIQGKC--IVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTADRKIEICKRAYNILTE 497 (1178)
T ss_pred -----HHHHHHHHHhcCCCC--EEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2345555554 765 46666653 244678889999999888763 5555555432111 1 2
Q ss_pred -Cce----EEEEecCCc--cCCCCCCCc---hHHHHHHHHhhcC-CCcEEEe-----eCCCCHHHHHHH---------HH
Q 021527 216 -EGF----VYLVSSIGV--TGARASISG---HVQTLLREIKESS-TKPVAVG-----FGISKPEHVQQV---------AG 270 (311)
Q Consensus 216 -~gf----iY~vs~~G~--TG~~~~~~~---~~~~~l~~vk~~~-~~Pv~vG-----fGIst~e~v~~v---------~~ 270 (311)
.|+ |++-...++ ||.. ..+. ...+.++.+|+.. +.|+.+| ||....+.++++ ..
T Consensus 498 ~~Gi~~edIi~DP~i~~v~~g~~-e~n~~~~~~le~i~~ik~~~pg~~~~~GlSN~SFglp~~~~~R~~ln~~FL~~a~~ 576 (1178)
T TIGR02082 498 KVGFPPEDIIFDPNILTIATGIE-EHRRYAINFIEAIRWIKEELPDAKISGGVSNVSFSFRGNPAAREAMHSVFLYHAIR 576 (1178)
T ss_pred HcCCCHHHEEEeCCccccccCch-HHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCCCCCchHHHHHHHHHHHHHHH
Confidence 344 666555542 3321 1111 2334455666655 7899886 888522223333 57
Q ss_pred cCCcEEEEhhHh
Q 021527 271 WGADGVIVGSAM 282 (311)
Q Consensus 271 ~GADGvIVGSai 282 (311)
+|-|.+||=..=
T Consensus 577 ~Gld~aIvnp~~ 588 (1178)
T TIGR02082 577 AGMDMGIVNAGK 588 (1178)
T ss_pred cCCchhhcChhh
Confidence 788888775443
|
S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. |
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.47 Score=46.05 Aligned_cols=178 Identities=16% Similarity=0.201 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE-ecCcchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF-TYYNPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm-~Y~n~i~~~g 155 (311)
++.++.++...+.|+.-..++--..+ +|..++.+.++++.|++++++++.+- |-++
T Consensus 87 eeIle~Ak~ak~~Ga~r~c~~aagr~-----------------~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~------ 143 (335)
T COG0502 87 EEILEAAKKAKAAGATRFCMGAAGRG-----------------PGRDMEEVVEAIKAVKEELGLEVCASLGMLT------ 143 (335)
T ss_pred HHHHHHHHHHHHcCCceEEEEEeccC-----------------CCccHHHHHHHHHHHHHhcCcHHhhccCCCC------
Confidence 46899999999999988888744443 12455667789999998888776552 1111
Q ss_pred HHHHHHHHHHcCCcEEE-------------ecCCChhhHHHHHHHHHHcCCCeE---EEeCCCChHHHHHHHHHhCC---
Q 021527 156 VDNFMSTVRDIGIRGLV-------------VPDVPLEETESLQKEAMKNKIELV---LFTTPTTPTDRMKAIVEASE--- 216 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvi-------------ipDlp~ee~~~~~~~~~~~gi~~I---~lisp~t~~eri~~i~~~a~--- 216 (311)
++-.++++++|+|..- +|.=++|+.....+.+++.|+++- ++--..+.++|+..+...+.
T Consensus 144 -~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~ 222 (335)
T COG0502 144 -EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT 222 (335)
T ss_pred -HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC
Confidence 5567889999999653 355567788888888999999743 22345677888866655432
Q ss_pred -ce--EE-EEecCCccCC-CCCCCchHHHHHHHH---hhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 217 -GF--VY-LVSSIGVTGA-RASISGHVQTLLREI---KESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 217 -gf--iY-~vs~~G~TG~-~~~~~~~~~~~l~~v---k~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.- |+ ++...|+-=. .... +..+.++.| |=.. .+++..|-....++.....+.+||+.+.+|-
T Consensus 223 pdsVPIn~l~P~~GTPle~~~~~--~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~ 295 (335)
T COG0502 223 PDSVPINFLNPIPGTPLENAKPL--DPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGD 295 (335)
T ss_pred CCeeeeeeecCCCCCccccCCCC--CHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecc
Confidence 11 22 2444442111 1122 234444443 3332 2455557677788878888889999999998
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.076 Score=46.60 Aligned_cols=140 Identities=17% Similarity=0.165 Sum_probs=80.7
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcC-Cc--------EEEecCCCh---hhHHHHHHHHHHcCCCeE
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIG-IR--------GLVVPDVPL---EETESLQKEAMKNKIELV 196 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG-ad--------GviipDlp~---ee~~~~~~~~~~~gi~~I 196 (311)
++++.+++. ++.+++-..... |+..+.+.+..+| ++ .++++|--+ ....+..+.++++.-...
T Consensus 7 ~~v~~a~~~---~~~i~~TRKt~P--g~r~l~~~Av~~GGg~~hR~gl~d~ili~~nHi~~~g~i~~av~~~~~~~~~~~ 81 (169)
T PF01729_consen 7 RMVDAAKGT---KIRIADTRKTIP--GLRPLEKYAVLAGGGDNHRLGLSDMILIKDNHIAFFGGIEEAVKAARQAAPEKK 81 (169)
T ss_dssp HHHHHTTTS---SSEEEEGSGS-T--TTHHHHHHHHHHTTSBHHHSSTTSSEEE-HHHHHHHSSHHHHHHHHHHHSTTTS
T ss_pred HHHHHhCCC---CEEEeecCCCCc--ccCHHHHHHHHhcCceeEECCCCCcEEehHHHHHHhCCHHHHHHHHHHhCCCCc
Confidence 356555543 777777665443 5566777665544 33 566654211 113334444444432221
Q ss_pred -EEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCc
Q 021527 197 -LFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGAD 274 (311)
Q Consensus 197 -~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GAD 274 (311)
..+-..+.++ ..+..+..-..|-+-. ..++++.+.++++++.. ++-+.+.+||+ ++++.++.+.|+|
T Consensus 82 ~I~VEv~~~ee-~~ea~~~g~d~I~lD~---------~~~~~~~~~v~~l~~~~~~v~ie~SGGI~-~~ni~~ya~~gvD 150 (169)
T PF01729_consen 82 KIEVEVENLEE-AEEALEAGADIIMLDN---------MSPEDLKEAVEELRELNPRVKIEASGGIT-LENIAEYAKTGVD 150 (169)
T ss_dssp EEEEEESSHHH-HHHHHHTT-SEEEEES----------CHHHHHHHHHHHHHHTTTSEEEEESSSS-TTTHHHHHHTT-S
T ss_pred eEEEEcCCHHH-HHHHHHhCCCEEEecC---------cCHHHHHHHHHHHhhcCCcEEEEEECCCC-HHHHHHHHhcCCC
Confidence 3344445444 4444453333333321 12456777788777653 57799999996 7999999999999
Q ss_pred EEEEhhHhhc
Q 021527 275 GVIVGSAMVK 284 (311)
Q Consensus 275 GvIVGSaiv~ 284 (311)
.+.+||....
T Consensus 151 ~isvg~~~~~ 160 (169)
T PF01729_consen 151 VISVGSLTHS 160 (169)
T ss_dssp EEEECHHHHS
T ss_pred EEEcChhhcC
Confidence 9999998765
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.13 Score=43.32 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-C-CCcEEEeeCCC
Q 021527 183 SLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-S-TKPVAVGFGIS 260 (311)
Q Consensus 183 ~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~-~~Pv~vGfGIs 260 (311)
-....++.+|++++.+-...++++-++...+ ...-++++|..- + ...+.+.+.++.+++. . +++|++|+.+-
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-~~adii~iSsl~--~---~~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIARQAVE-ADVHVVGVSSLA--G---GHLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCch--h---hhHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 3455567778877766555555555544433 233334443221 1 1123356677778775 3 57788877775
Q ss_pred CHHHHHHHHHcCCcEEE-EhhHhhc
Q 021527 261 KPEHVQQVAGWGADGVI-VGSAMVK 284 (311)
Q Consensus 261 t~e~v~~v~~~GADGvI-VGSaiv~ 284 (311)
.++..++.++|.|+++ .||.+..
T Consensus 95 -~~~~~~l~~~Gvd~~~~~gt~~~~ 118 (132)
T TIGR00640 95 -PQDFDELKEMGVAEIFGPGTPIPE 118 (132)
T ss_pred -hHhHHHHHHCCCCEEECCCCCHHH
Confidence 5788999999999986 2444433
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=2.1 Score=41.61 Aligned_cols=204 Identities=19% Similarity=0.227 Sum_probs=113.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCC---CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPY---SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~Pf---sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
.+.+.+.++.+.++|++++-.| .| +.|+. -.|.. ++.++++++.++++++|++--.. +
T Consensus 106 ~e~~~~~A~~lk~~ga~~~r~~-~fKpRTsp~s-------------f~G~g-~~gL~~L~~~~~~~Gl~v~tev~-d--- 166 (335)
T PRK08673 106 EEQILEIARAVKEAGAQILRGG-AFKPRTSPYS-------------FQGLG-EEGLKLLAEAREETGLPIVTEVM-D--- 166 (335)
T ss_pred HHHHHHHHHHHHHhchhhccCc-EecCCCCCcc-------------ccccc-HHHHHHHHHHHHHcCCcEEEeeC-C---
Confidence 3679999999999999965433 33 33321 01222 46678999999999999877432 1
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC--hHHHH---HHHHHhCC-ceEEEEecCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT--PTDRM---KAIVEASE-GFVYLVSSIG 226 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t--~~eri---~~i~~~a~-gfiY~vs~~G 226 (311)
.+.++.+.+. +|.+-|+--.... ..+.+++.+.|. +|.+-.... .+|.. +.+.+... ..+.|-. |
T Consensus 167 ----~~~~~~l~~~-vd~lqIgAr~~~N-~~LL~~va~~~k-PViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~er--G 237 (335)
T PRK08673 167 ----PRDVELVAEY-VDILQIGARNMQN-FDLLKEVGKTNK-PVLLKRGMSATIEEWLMAAEYILAEGNPNVILCER--G 237 (335)
T ss_pred ----HHHHHHHHHh-CCeEEECcccccC-HHHHHHHHcCCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEEC--C
Confidence 2345555566 8888887443333 335666667775 455555433 33332 22222222 2444432 3
Q ss_pred ccCC-CCCCCchHHHHHHHHhhcCCCcEEE----eeCCC--CHHHHHHHHHcCCcEEEEhhHhhc--hhhhcCCchhHHH
Q 021527 227 VTGA-RASISGHVQTLLREIKESSTKPVAV----GFGIS--KPEHVQQVAGWGADGVIVGSAMVK--LLGEAQSPEEGLK 297 (311)
Q Consensus 227 ~TG~-~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIs--t~e~v~~v~~~GADGvIVGSaiv~--~~~~~~~~~~~~~ 297 (311)
++.. ......-....+..+|+.++.||++ +.|.+ -+........+||||++|=..+.- .+.++. ..-..+
T Consensus 238 ~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~-~sl~p~ 316 (335)
T PRK08673 238 IRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGP-QSLTPE 316 (335)
T ss_pred CCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcch-hcCCHH
Confidence 3111 1111111234577888888999977 33331 124556677899999999765442 221111 011145
Q ss_pred HHHHHHHHHHh
Q 021527 298 ELEKFAKSLKS 308 (311)
Q Consensus 298 ~~~~~~~~l~~ 308 (311)
++++++++++.
T Consensus 317 e~~~lv~~i~~ 327 (335)
T PRK08673 317 EFEELMKKLRA 327 (335)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.98 Score=47.19 Aligned_cols=145 Identities=12% Similarity=0.195 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE-EEEecC-cchhcc
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI-ALFTYY-NPILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi-ilm~Y~-n~i~~~ 154 (311)
+...++++...++|+|++-+-.+.+|. .-+.. .++..++. ..-+ ..++|. .|. +
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd~----~n~~~-----------------~i~~ak~~-G~~v~~~i~~t~~p~--~ 151 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALNDV----RNMEV-----------------AIKAAKKA-GAHVQGTISYTTSPV--H 151 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecChH----HHHHH-----------------HHHHHHHc-CCEEEEEEEeccCCC--C
Confidence 345667888889999999998776663 22222 23333322 1111 112331 232 2
Q ss_pred CHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecC
Q 021527 155 GVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSI 225 (311)
Q Consensus 155 g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~ 225 (311)
..+ ++++.+.++|+|.+.+.| +.+++..++.+.+++. ++.+-+-...++--.-...++....|..++- +..
T Consensus 152 t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~ 231 (592)
T PRK09282 152 TIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAIS 231 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeecc
Confidence 233 455677889999999988 5567888887777653 5433333333333233344445556766663 333
Q ss_pred CccCCCCCCCchHHHHHHHHhh
Q 021527 226 GVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
| -|.+++ ++.+.+++..++.
T Consensus 232 g-~g~~ag-n~~~e~vv~~L~~ 251 (592)
T PRK09282 232 P-LAFGTS-QPPTESMVAALKG 251 (592)
T ss_pred c-cCCCcC-CHhHHHHHHHHHh
Confidence 3 344444 5556666766654
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.14 Score=51.95 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.+|++.+.+..-.++.+-+..| -+..+.++++++|+.. ++||++|++. |.|+++++.++|||++-||
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g-------~~~~~~~~i~~i~~~~~~~~vi~g~~~-t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHG-------HQVKMISAIKAVRALDLGVPIVAGNVV-SAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCC-------CcHHHHHHHHHHHHHCCCCeEEEeccC-CHHHHHHHHHhCCCEEEEC
Confidence 4777777665555554433222 2356778999999865 8999998777 5899999999999999876
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.24 Score=47.70 Aligned_cols=41 Identities=29% Similarity=0.484 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCCcEEE---eeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 239 QTLLREIKESSTKPVAV---GFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~v---GfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.+.|+.+++.+++||++ |+|. +.+.++.+.+.|+|+++|+.
T Consensus 167 ~~~i~~l~~~~~vPVivK~~g~g~-s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 167 LERIEELVKALSVPVIVKEVGFGI-SRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCC-CHHHHHHHHHcCCCEEEECC
Confidence 36788888888999998 9885 58999999999999999965
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.2 Score=46.34 Aligned_cols=145 Identities=12% Similarity=0.191 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE-EecC-cchhcc
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL-FTYY-NPILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil-m~Y~-n~i~~~ 154 (311)
+-..++++...++|+|.+-+-.+.+|. .- +...++..++. ..-+.. ++|. +|. +
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~lnd~----~n-----------------~~~~i~~ak~~-G~~v~~~i~~t~~p~--~ 146 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDALNDP----RN-----------------LQAAIQAAKKH-GAHAQGTISYTTSPV--H 146 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcH----HH-----------------HHHHHHHHHHc-CCEEEEEEEeccCCC--C
Confidence 345667888889999999998777762 11 12233333432 122221 2332 332 2
Q ss_pred CH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecC
Q 021527 155 GV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSI 225 (311)
Q Consensus 155 g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~ 225 (311)
.. .++++.+.++|+|.+.+.| +.+++..++...+++. ++.+-+-...+.--.-...++....|..++- +..
T Consensus 147 ~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~ 226 (582)
T TIGR01108 147 TLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAIS 226 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeccc
Confidence 22 3456677889999999998 5567788877777653 5443333343333333444555556776663 344
Q ss_pred CccCCCCCCCchHHHHHHHHhh
Q 021527 226 GVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
| -|.+++ ++.+.+++..++.
T Consensus 227 G-lG~~tG-n~~le~vv~~L~~ 246 (582)
T TIGR01108 227 S-MSGGTS-HPPTETMVAALRG 246 (582)
T ss_pred c-cccccc-ChhHHHHHHHHHh
Confidence 4 333433 3445666666654
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=95.67 E-value=2.4 Score=41.49 Aligned_cols=210 Identities=10% Similarity=0.103 Sum_probs=130.4
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..++++ -++..|= ..+++.+.-++++.++.+..+|---.|-.-.+. ..+.+..
T Consensus 4 ~k~iL~~A~~~~-yAV~AfN---~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~-----------------g~~~~~~ 62 (347)
T TIGR01521 4 MRQLLDHAAEFG-YGVPAFN---VNNMEQMRAIMEAADKTDSPVILQASRGARSYA-----------------GAPFLRH 62 (347)
T ss_pred HHHHHHHHHHcC-ceEEEEe---eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhC-----------------CHHHHHH
Confidence 355666655543 4555555 457889999999999999998776533322222 2233455
Q ss_pred HHHHhhccCC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cC-------CChhh----HHHHHHHHHHcCCCe
Q 021527 130 MLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PD-------VPLEE----TESLQKEAMKNKIEL 195 (311)
Q Consensus 130 ~i~~ir~~~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pD-------lp~ee----~~~~~~~~~~~gi~~ 195 (311)
+++.+.++.+ +||.|-. + +.-..+.+..|.++|.+.|.+ .. +|+|| ..++.+.++.+|+.+
T Consensus 63 ~~~~~ae~~~~VPValHL--D---Hg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 63 LILAAIEEYPHIPVVMHQ--D---HGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred HHHHHHHhCCCCcEEEEC--C---CCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 7777777775 9999853 1 222246888999999999888 23 48887 567888888766531
Q ss_pred E----EE--e--------------------CCCChHHHHHHHHHhCCceEEE-E---ecCCccCCC-CCCCc-hHHHHHH
Q 021527 196 V----LF--T--------------------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTGAR-ASISG-HVQTLLR 243 (311)
Q Consensus 196 I----~l--i--------------------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~-~~~~~-~~~~~l~ 243 (311)
= .+ . .--|.++..++..+.. |...+ + +..|..-.. ...++ =-.+.++
T Consensus 138 EaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~T-gvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~ 216 (347)
T TIGR01521 138 EGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKT-KVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIE 216 (347)
T ss_pred EEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHHHHH-CcCEEehhcccccCCcCCCCCCChhhcCHHHHH
Confidence 0 00 0 0023344455555533 44444 2 344432210 01000 1235689
Q ss_pred HHhhcC-CCcEEE--eeCCCC--------------------HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 244 EIKESS-TKPVAV--GFGISK--------------------PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 244 ~vk~~~-~~Pv~v--GfGIst--------------------~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
++++.+ ++|++. |.|+.. .|++++..+.|.-=|=|+|.+....
T Consensus 217 eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~ 282 (347)
T TIGR01521 217 EIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLAS 282 (347)
T ss_pred HHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHHHH
Confidence 998888 799866 555531 5899999999999999999886544
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PRK14566 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.19 Score=47.11 Aligned_cols=123 Identities=16% Similarity=0.243 Sum_probs=73.4
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHHH----HHHHHHHcCCCeEEEeCCCChHHH------------HHHHHH-h-C-
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETES----LQKEAMKNKIELVLFTTPTTPTDR------------MKAIVE-A-S- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~~----~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~-~-a- 215 (311)
-.+.+++.|++++|+.. ..+.|..+ -.+.+.++|+.+|+-+.-+. ++| ++...+ . .
T Consensus 87 S~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtl-eere~g~t~~vv~~Ql~~~l~~~~~~ 165 (260)
T PRK14566 87 SGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESG-PAREARRTFEVIAEELDIVIEKNGTM 165 (260)
T ss_pred CHHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcH-HHHhcCCHHHHHHHHHHHHHhccchh
Confidence 45678999999999963 12233333 45567889998887766432 222 111111 0 0
Q ss_pred --Cc-eEEEEecCC-ccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhH
Q 021527 216 --EG-FVYLVSSIG-VTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQVAGW-GADGVIVGSA 281 (311)
Q Consensus 216 --~g-fiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSa 281 (311)
.. .|-|.++-. .||.. ..+.+..+....+|+. .+++|+.|+.|+ ++++.+++.. ..||+.||.|
T Consensus 166 ~~~~ivIAYEPvWAIGTG~~-At~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~-~~N~~~l~~~~dIDG~LVGgA 243 (260)
T PRK14566 166 AFDNAIIAYEPLWAVGTGKS-ATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVT-PSNAADLFAQPDVDGGLIGGA 243 (260)
T ss_pred hcCcEEEEECcHHhcCCCCC-CCHHHHHHHHHHHHHHHHhcCccccccceEEecCCCC-HhHHHHHhcCCCCCeEEechH
Confidence 11 222322111 24433 2345555555556652 258999999997 8999998643 3799999988
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
=.+
T Consensus 244 SL~ 246 (260)
T PRK14566 244 SLN 246 (260)
T ss_pred hcC
Confidence 765
|
|
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.2 Score=38.24 Aligned_cols=173 Identities=16% Similarity=0.217 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
|-+.+.++...+.|+|+||+++=.+ .||..+-. +. =.+++++++.+++ +.++.+-.-.......-.
T Consensus 13 ent~~a~~~a~~~g~~~iE~Dv~~t---kDg~~vv~-Hd-----i~tL~e~l~~~~~-----~~~i~leiK~~~~~~~~~ 78 (189)
T cd08556 13 ENTLAAFRKALEAGADGVELDVQLT---KDGVLVVI-HD-----IPTLEEVLELVKG-----GVGLNIELKEPTRYPGLE 78 (189)
T ss_pred chHHHHHHHHHHcCCCEEEEEeeEc---CCCCEEEE-cC-----CCCHHHHHHhccc-----CcEEEEEECCCCCchhHH
Confidence 7888999999999999999976553 34533211 10 1466666655543 445555432211100112
Q ss_pred HHHHHHHHHcC-CcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCC
Q 021527 157 DNFMSTVRDIG-IRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASIS 235 (311)
Q Consensus 157 ~~fi~~~~~aG-adGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~ 235 (311)
++.++.+.+.| .+-+++--...+....+++... ++...++............. ....+..++.... ....
T Consensus 79 ~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~------~~~~ 149 (189)
T cd08556 79 AKVAELLREYGLEERVVVSSFDHEALRALKELDP--EVPTGLLVDKPPLDPLLAEL-ARALGADAVNPHY------KLLT 149 (189)
T ss_pred HHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCC--CCcEEEEeecCcccchhhhH-HHhcCCeEEccCh------hhCC
Confidence 44556666665 5666665544443443333222 33333333322221221111 1122332221111 0112
Q ss_pred chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 236 GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 236 ~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
.++++.+++. ++++ .-+.++++++.+.+.+.|+||++
T Consensus 150 ---~~~i~~~~~~-g~~v-~~wtvn~~~~~~~~~~~GVdgI~ 186 (189)
T cd08556 150 ---PELVRAAHAA-GLKV-YVWTVNDPEDARRLLALGVDGII 186 (189)
T ss_pred ---HHHHHHHHHc-CCEE-EEEcCCCHHHHHHHHHCCCCEEe
Confidence 3678888774 7888 55899999999999999999996
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.082 Score=50.75 Aligned_cols=163 Identities=20% Similarity=0.261 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHCC--CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc----CCCcEEEEecCcc
Q 021527 77 STTAEALKLLDSCG--SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ----MSCPIALFTYYNP 150 (311)
Q Consensus 77 ~~~~e~~~~L~~~G--aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~----~~iPiilm~Y~n~ 150 (311)
+...+.++.....| +|++++.+ |.|---| .|.++....+++.+..+..-+.. .+.|+.+.
T Consensus 193 d~~~dy~~gV~~~g~~adylviNv--SsPNtpG-------lr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~k----- 258 (398)
T KOG1436|consen 193 DAILDYVEGVRVFGPFADYLVINV--SSPNTPG-------LRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVK----- 258 (398)
T ss_pred chHHHHHHHhhhcccccceEEEec--cCCCCcc-------hhhhhhHHHHHHHHHHHHHHHhccccCCCCceEEE-----
Confidence 33445555544443 78888874 4455555 44455555566555544443322 33466654
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH--hCCceEEEEecCCcc
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE--ASEGFVYLVSSIGVT 228 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~--~a~gfiY~vs~~G~T 228 (311)
|-|||--+|..++....++.+++-++. +.+| .+|-+.... ...++ -|.+
T Consensus 259 ---------------------iapDL~~~el~dia~v~kk~~idg~Iv-sntt-Vsrp~~~~~~~~~~et------GGLs 309 (398)
T KOG1436|consen 259 ---------------------IAPDLSEKELKDIALVVKKLNIDGLIV-SNTT-VSRPKASLVNKLKEET------GGLS 309 (398)
T ss_pred ---------------------eccchhHHHHHHHHHHHHHhCccceee-cCce-eecCcccccccccccc------CCCC
Confidence 345555555555555555555543332 2222 233222111 11111 0223
Q ss_pred CCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 229 GARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|. .+.+--.+.++.+.+.+ ++||+--+||+|-+|+-+-+.+||.-|.++|+|+.
T Consensus 310 G~--plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y 365 (398)
T KOG1436|consen 310 GP--PLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY 365 (398)
T ss_pred CC--ccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhh
Confidence 32 23333456778777776 59999999999999999999999999999999987
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.15 Score=49.10 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCC-ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDP-DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P-~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
..+.+..+..++.-...+..-+-.|+. +...+.++++.++++|+|.|.+--=..+....|+ .+
T Consensus 119 ~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~-------------a~--- 182 (321)
T PRK10415 119 DLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE-------------AE--- 182 (321)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCC-------------cC---
Confidence 346666666655433456666777764 4457889999999999999988411111112221 22
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
++.++++++.+++||+..|-.. ..+++.+.+.+.|+|||.+.
T Consensus 183 -~~~i~~ik~~~~iPVI~nGgI~-----s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 183 -YDSIRAVKQKVSIPVIANGDIT-----DPLKARAVLDYTGADALMIG 224 (321)
T ss_pred -hHHHHHHHHhcCCcEEEeCCCC-----CHHHHHHHHhccCCCEEEEC
Confidence 4688999999999999976322 23444555556899999996
|
|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.14 Score=42.18 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-C-CCcEEEeeCCC
Q 021527 183 SLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-S-TKPVAVGFGIS 260 (311)
Q Consensus 183 ~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~-~~Pv~vGfGIs 260 (311)
.+...++.+|.+.+.+ .+.+|.+.+.+.+.....-+.++|.. .....+.+.++++++++. . ++++++|+...
T Consensus 18 ~~~~~l~~~G~~vi~l-G~~vp~e~~~~~a~~~~~d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 18 VIARALRDAGFEVIYT-GLRQTPEEIVEAAIQEDVDVIGLSSL-----SGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEccc-----chhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3455567888876665 44455555433333333322333321 112234567788888886 4 57788888775
Q ss_pred CHHHHHHHHHcCCcEEEEh
Q 021527 261 KPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVG 279 (311)
+++..++.++|.|+++=+
T Consensus 92 -~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 92 -PEDYELLKEMGVAEIFGP 109 (122)
T ss_pred -HHHHHHHHHCCCCEEECC
Confidence 577899999999999644
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.60 E-value=2 Score=40.23 Aligned_cols=170 Identities=13% Similarity=0.173 Sum_probs=92.8
Q ss_pred ccEEEEEeCCCCChhh-HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH----HHHHhhcc
Q 021527 63 VALIPYITAGDPDLST-TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS----MLKEVVPQ 137 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~-~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~----~i~~ir~~ 137 (311)
..+..+..+..++... -.+.++.+.++|+|.+.+.+|-||. .++. ..|.+.++.++ .++..++.
T Consensus 63 ~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~-----~~~~------~~~~~~~~~~~~~~~~i~~ak~~ 131 (273)
T cd07941 63 AKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTIFGKSWDL-----HVTE------ALGTTLEENLAMIRDSVAYLKSH 131 (273)
T ss_pred cEEEEEecccccCCCccchHHHHHHHhCCCCEEEEEEcCCHH-----HHHH------HcCCCHHHHHHHHHHHHHHHHHc
Confidence 3455555443343321 1245677788999999999888772 1222 23444444444 44444443
Q ss_pred CCCcEE--EEecCcchhccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-C-CCeEEEeCCCChHH
Q 021527 138 MSCPIA--LFTYYNPILKRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-K-IELVLFTTPTTPTD 206 (311)
Q Consensus 138 ~~iPii--lm~Y~n~i~~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-g-i~~I~lisp~t~~e 206 (311)
...+. .+.|++. +.... .++++.+.++|++.+.++| +.+++..++.+.+++. + +.+-+-...+.--.
T Consensus 132 -G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla 209 (273)
T cd07941 132 -GREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLA 209 (273)
T ss_pred -CCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcH
Confidence 33332 3334321 11122 3455677889999999998 5567777777777663 3 33323333333223
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk 246 (311)
-...++....|..++-+..+.-|.+.+.. ++++++..++
T Consensus 210 ~An~laA~~aGa~~id~s~~GlGeraGn~-~~e~~~~~L~ 248 (273)
T cd07941 210 VANSLAAVEAGATQVQGTINGYGERCGNA-NLCSIIPNLQ 248 (273)
T ss_pred HHHHHHHHHcCCCEEEEeccccccccccc-cHHHHHHHHH
Confidence 33344455568878754444456666543 4566666664
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=95.59 E-value=2.3 Score=40.86 Aligned_cols=155 Identities=22% Similarity=0.325 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC---CCCC-------CChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY---SDPL-------ADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf---sDP~-------aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
+...+.++.+.+.|+..+-| |+|- .|+. -||++.+ .++.||+++. -++++
T Consensus 51 d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~------------------air~iK~~~p-dl~vi 111 (320)
T cd04824 51 NRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQ------------------AIKLIREEFP-ELLIA 111 (320)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHH------------------HHHHHHHhCC-CcEEE
Confidence 47899999999999998776 8872 5566 2454433 4445555431 13333
Q ss_pred e------cCc----chhc-cC-H------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCC-CeEEEeC---
Q 021527 146 T------YYN----PILK-RG-V------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKI-ELVLFTT--- 200 (311)
Q Consensus 146 ~------Y~n----~i~~-~g-~------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi-~~I~lis--- 200 (311)
+ |.. .+.. .| + +...+. .+++|+|-|--.|+=......+++.+.++|. ..+..++
T Consensus 112 ~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdMMDGrV~aIR~aLD~~G~~~~v~ImSYsa 191 (320)
T cd04824 112 CDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDMMDGRVRAIKQALIQAGLGNKVSVMSYSA 191 (320)
T ss_pred EeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEecccccccHHHHHHHHHHHCCCccCCeeeehHH
Confidence 1 221 1221 12 1 223332 3679999976668766778889999999999 5555432
Q ss_pred -----------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-
Q 021527 201 -----------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS- 249 (311)
Q Consensus 201 -----------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~- 249 (311)
|....|-+++... ..+|...++=.- .+ ...+.|+++|+.+
T Consensus 192 KyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKP-------al--~YLDIi~~~k~~~~ 262 (320)
T cd04824 192 KFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKP-------GT--PYLDIVREAKDKHP 262 (320)
T ss_pred HhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcC-------Cc--hHHHHHHHHHHhcc
Confidence 2222233444322 356766554111 11 2568899999999
Q ss_pred CCcEEEeeCCC
Q 021527 250 TKPVAVGFGIS 260 (311)
Q Consensus 250 ~~Pv~vGfGIs 260 (311)
++|++ ..-||
T Consensus 263 ~~Pva-aYqVS 272 (320)
T cd04824 263 DLPLA-VYHVS 272 (320)
T ss_pred CCCEE-EEEcc
Confidence 99994 45454
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=2.5 Score=41.29 Aligned_cols=211 Identities=12% Similarity=0.102 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.|+..++.+ -++..|= ..+++...-++++.++.+..+|----|..-.+. ..+.+.
T Consensus 5 ~~k~lL~~A~~~~-yaV~AfN---~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~-----------------g~~~~~ 63 (347)
T PRK13399 5 TLRQLLDHAAENG-YGVPAFN---VNNMEQILAIMEAAEATDSPVILQASRGARKYA-----------------GDAMLR 63 (347)
T ss_pred cHHHHHHHHHHCC-ceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhC-----------------CHHHHH
Confidence 4567777766554 4555554 347889999999999999998776533322221 123345
Q ss_pred HHHHHhhccC-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCC-------Chhh----HHHHHHHHHHcCCC
Q 021527 129 SMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDV-------PLEE----TESLQKEAMKNKIE 194 (311)
Q Consensus 129 ~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDl-------p~ee----~~~~~~~~~~~gi~ 194 (311)
.+++...++. ++||.|-. -+....+.+.+|.++|.+.|.+ ..+ |+|| ..++.+.++.+|+.
T Consensus 64 ~~v~~~ae~~~~VPVaLHL-----DHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~Gvs 138 (347)
T PRK13399 64 HMVLAAAEMYPDIPICLHQ-----DHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVS 138 (347)
T ss_pred HHHHHHHHhcCCCcEEEEC-----CCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCe
Confidence 5777777777 49999853 2222346889999999999888 234 4776 56788888887763
Q ss_pred eE----EEe----------------------CCCChHHHHHHHHHhCCceEEE----EecCCccCC--CCCCCchHHHHH
Q 021527 195 LV----LFT----------------------TPTTPTDRMKAIVEASEGFVYL----VSSIGVTGA--RASISGHVQTLL 242 (311)
Q Consensus 195 ~I----~li----------------------sp~t~~eri~~i~~~a~gfiY~----vs~~G~TG~--~~~~~~~~~~~l 242 (311)
+= .+- +--|.++...+..+. .|...+ .+..|..-. +...+.=-.+.+
T Consensus 139 VEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~-TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl 217 (347)
T PRK13399 139 VEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQR-TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRI 217 (347)
T ss_pred EEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHH-HCcCEEhhhhccccCCcCCCCCCChhhccHHHH
Confidence 21 000 002334444455543 344444 244443321 111000123578
Q ss_pred HHHhhcC-CCcEEE--eeCCC--------------------CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 243 REIKESS-TKPVAV--GFGIS--------------------KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 243 ~~vk~~~-~~Pv~v--GfGIs--------------------t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+++++.+ ++|++. |.|+. ..|++++..+.|.-=|=|+|.+....
T Consensus 218 ~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~ 284 (347)
T PRK13399 218 EEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAM 284 (347)
T ss_pred HHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHHHH
Confidence 8898888 799866 55553 15999999999999999999886544
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.36 Score=53.99 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=112.0
Q ss_pred CChhhHHHHHHHHHHC--CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEE-----
Q 021527 74 PDLSTTAEALKLLDSC--GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALF----- 145 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~--GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm----- 145 (311)
....+.+.++..+++. |...+|+. |...=..+.|-|.. +=.+-++++|+. .++|+..+
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~w---------ggAtfd~~~rfl~E-----dPwerl~~~r~~~pn~~~qml~Rg~n 615 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECW---------GGATFDVAMRFLHE-----DPWERLEDLRKGVPNILFQMLLRGAN 615 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEee---------CCccHHHHHHHhcC-----CHHHHHHHHHHhCCCCceeeeecccc
Confidence 3346788999999984 99999995 32333333443321 124456666665 67888766
Q ss_pred --ecCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeE---EEe----CCCC---hHH----H
Q 021527 146 --TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELV---LFT----TPTT---PTD----R 207 (311)
Q Consensus 146 --~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I---~li----sp~t---~~e----r 207 (311)
+|-| .-.-=++.|++.+++.|+|-+-+=|... +......+..++.|...- .+. .|.. +.+ .
T Consensus 616 ~vgy~~-ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ 694 (1143)
T TIGR01235 616 GVGYTN-YPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNL 694 (1143)
T ss_pred ccCccC-CCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHH
Confidence 3443 1001136799999999999999987654 345566777888887432 222 1222 233 2
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.+++.+..-.-+++-. +.|. ..|....++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 695 ak~l~~~Gad~I~ikD---t~Gl--l~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~-an~laA~eaGad~v 761 (1143)
T TIGR01235 695 AVELEKAGAHILGIKD---MAGL--LKPAAAKLLIKALREKTDLPIHFHTHDTSGIAV-ASMLAAVEAGVDVV 761 (1143)
T ss_pred HHHHHHcCCCEEEECC---CcCC--cCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHH-HHHHHHHHhCCCEE
Confidence 3333333333344433 3333 34667889999999988999877 345543 45666778999876
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.8 Score=43.68 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=104.1
Q ss_pred cEEEEEeCCCCChhhHHHHHHHH-----HHCC----CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 64 ALIPYITAGDPDLSTTAEALKLL-----DSCG----SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L-----~~~G----aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
.-|.+-.+.+.+.+...+-++.+ .+.| +|+|=||.+..|| +.+...++++
T Consensus 92 ~~Ia~eI~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp---------------------~~v~~~Vk~V 150 (450)
T PRK04165 92 TGIAVDVSDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDP---------------------EKFAKAVKKV 150 (450)
T ss_pred CEEEEEEeCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCH---------------------HHHHHHHHHH
Confidence 33444446666667777777777 6677 9999999888765 2334678888
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcE--EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG--LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadG--viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
++.+++|+.+.++ | .+-++.+.++|+|+ +|.. +..+...++.+.++++|..++. .++. .+.++++.
T Consensus 151 ~~~~dvPLSIDT~-d-------pevleaAleagad~~plI~S-at~dN~~~m~~la~~yg~pvVv-~~~d--l~~L~~lv 218 (450)
T PRK04165 151 AETTDLPLILCSE-D-------PAVLKAALEVVADRKPLLYA-ATKENYEEMAELAKEYNCPLVV-KAPN--LEELKELV 218 (450)
T ss_pred HHhcCCCEEEeCC-C-------HHHHHHHHHhcCCCCceEEe-cCcchHHHHHHHHHHcCCcEEE-Echh--HHHHHHHH
Confidence 8778999999884 2 34677788888885 2222 3334456677888999977655 3443 22222322
Q ss_pred Hh--CCce--EEEEecCCccCCCCCCCchHHHHHHHH---hhc--CCCcEEEeeCCCC-----HH--HHHHHHHcCCcEE
Q 021527 213 EA--SEGF--VYLVSSIGVTGARASISGHVQTLLREI---KES--STKPVAVGFGISK-----PE--HVQQVAGWGADGV 276 (311)
Q Consensus 213 ~~--a~gf--iY~vs~~G~TG~~~~~~~~~~~~l~~v---k~~--~~~Pv~vGfGIst-----~e--~v~~v~~~GADGv 276 (311)
+. ..|+ +++-...| |-...+ .....++++ ++. ...|+++|-+=.+ -| .+..+...|||-+
T Consensus 219 ~~~~~~GI~dIILDPg~g--gf~ksl--~~~~~iRr~Al~~~~~~lgyPil~~~s~k~~~~~~~E~~~As~~~~kya~i~ 294 (450)
T PRK04165 219 EKLQAAGIKDLVLDPGTE--NIKETL--DDFVQIRRAAIKKGDRPLGYPIIAFPIEAWMSDPMKEAAIASTLIAKYADIL 294 (450)
T ss_pred HHHHHcCCCcEEECCCCc--hhhhhH--HHHHHHHhhhhhcccccCCCCEEEcchhhcccchHHHHHHHHHHHHhCCcEE
Confidence 22 2343 34433222 111122 122345554 332 3579988665211 11 2233445668888
Q ss_pred EEhh
Q 021527 277 IVGS 280 (311)
Q Consensus 277 IVGS 280 (311)
|+-+
T Consensus 295 Vl~~ 298 (450)
T PRK04165 295 VLHD 298 (450)
T ss_pred EEcC
Confidence 8744
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.32 Score=45.73 Aligned_cols=23 Identities=35% Similarity=0.163 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeC
Q 021527 178 LEETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 178 ~ee~~~~~~~~~~~gi~~I~lis 200 (311)
.++..++.+.+++.|.+.+.++.
T Consensus 79 ~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 79 TEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcC
Confidence 34444455555555555554443
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.36 Score=48.63 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=75.8
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
...+|++ +.+++..++|||.|=+|.+--. .|+-...++.+++-+.++..++ .++.+.+..
T Consensus 7 lapag~~------e~l~aAi~~GADaVY~G~~~~~------------~R~~~~~f~~edl~eav~~ah~-~g~kvyvt~- 66 (443)
T PRK15452 7 LSPAGTL------KNMRYAFAYGADAVYAGQPRYS------------LRVRNNEFNHENLALGINEAHA-LGKKFYVVV- 66 (443)
T ss_pred EEECCCH------HHHHHHHHCCCCEEEECCCccc------------hhhhccCCCHHHHHHHHHHHHH-cCCEEEEEe-
Confidence 3466665 8899999999999999966311 2232345666665556655443 445565532
Q ss_pred Ccchhc----cCHHHHHHHHHHcCCcEEEecCCChhh-H-------------------HHHHHHHHHcCCCeEEEeCCCC
Q 021527 148 YNPILK----RGVDNFMSTVRDIGIRGLVVPDVPLEE-T-------------------ESLQKEAMKNKIELVLFTTPTT 203 (311)
Q Consensus 148 ~n~i~~----~g~~~fi~~~~~aGadGviipDlp~ee-~-------------------~~~~~~~~~~gi~~I~lisp~t 203 (311)
|.+.. ....++++.+.+.|+||||+.|+..=. + ..-.+..++.|++.+.+ ++..
T Consensus 67 -n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvL-SrEL 144 (443)
T PRK15452 67 -NIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVIL-SREL 144 (443)
T ss_pred -cCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEE-CCcC
Confidence 32221 122456777889999999997743100 0 11123346678776664 5666
Q ss_pred hHHHHHHHHHh
Q 021527 204 PTDRMKAIVEA 214 (311)
Q Consensus 204 ~~eri~~i~~~ 214 (311)
+-+.|+.+.+.
T Consensus 145 sl~EI~~i~~~ 155 (443)
T PRK15452 145 SLEEIEEIRQQ 155 (443)
T ss_pred CHHHHHHHHhh
Confidence 67778888654
|
|
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.17 Score=41.00 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCeEEEeCCCChHHH-HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeC
Q 021527 182 ESLQKEAMKNKIELVLFTTPTTPTDR-MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFG 258 (311)
Q Consensus 182 ~~~~~~~~~~gi~~I~lisp~t~~er-i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfG 258 (311)
..+...++.+|.+.+.+-. ..+.+. ++.+.+....+ ..+|.. .+.-...+.++++.+|+.. +++|++|+.
T Consensus 17 ~~~~~~l~~~G~~V~~lg~-~~~~~~l~~~~~~~~pdv-V~iS~~-----~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 17 NIVARALRDAGFEVIDLGV-DVPPEEIVEAAKEEDADA-IGLSGL-----LTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred HHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCE-EEEecc-----ccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 3455667888988766544 444444 44443333333 333322 1112345678888888874 578889888
Q ss_pred CCCHHHHHHHHHcCCcEEEE
Q 021527 259 ISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIV 278 (311)
.-+ ++-+.+.+.|+|+++=
T Consensus 90 ~~~-~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 90 IVT-RDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCC-hhHHHHHHcCCeEEEC
Confidence 866 3446788899999864
|
This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.92 Score=42.86 Aligned_cols=132 Identities=13% Similarity=0.088 Sum_probs=70.7
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCc---------EEEecCCC---hhhHHHHHHHHHHcCC-CeEEEeCCCChHH
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIR---------GLVVPDVP---LEETESLQKEAMKNKI-ELVLFTTPTTPTD 206 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGad---------GviipDlp---~ee~~~~~~~~~~~gi-~~I~lisp~t~~e 206 (311)
.++.+++--.+. -|...|.+.+..+|-- .+++-|=- .+...+..+.+++.-- .....+-..+- +
T Consensus 117 ~~~~i~~TRKt~--Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tl-e 193 (273)
T PRK05848 117 HKVKLLDTRKTR--PLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESL-E 193 (273)
T ss_pred CCeEEEecCCCC--cchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCH-H
Confidence 345565433222 2456677766665522 33332210 1334455555555321 22333444444 4
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
...+.++ .|+.++.- . +..+..+.+.++.++.. -++.+.+.+|| ++++++++.+.|+|.+++|+.+..
T Consensus 194 ea~~A~~--~GaDiI~L-D------n~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~s 262 (273)
T PRK05848 194 EAKNAMN--AGADIVMC-D------NMSVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQ 262 (273)
T ss_pred HHHHHHH--cCCCEEEE-C------CCCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcC
Confidence 4444444 34444331 0 01123344445443322 24569999999 799999999999999999998764
|
|
| >cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II | Back alignment and domain information |
|---|
Probab=95.44 E-value=2.8 Score=40.80 Aligned_cols=211 Identities=13% Similarity=0.148 Sum_probs=129.9
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC-CCCC---------CChHHHHHHHHHHHHcC
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY-SDPL---------ADGPVIQAAATRSLARG 121 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf-sDP~---------aDGp~Iq~a~~~Al~~G 121 (311)
+.|+..+++ +-++..|- -.+++...-++++.++.++++|---.|. ...+ -||..+ .
T Consensus 3 ~ll~~A~~~-~yAV~AfN---~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~---------~- 68 (340)
T cd00453 3 KVFQVAKEN-NFALPAVN---CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAI---------L- 68 (340)
T ss_pred HHHHHHHHC-CceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhh---------h-
Confidence 456655444 45565565 3477888889999999999987664331 0011 111111 0
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEEecCcchhccC--HHHHHHHHHHcC-----------CcEEEe--cCCChhh----HH
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG--VDNFMSTVRDIG-----------IRGLVV--PDVPLEE----TE 182 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g--~~~fi~~~~~aG-----------adGvii--pDlp~ee----~~ 182 (311)
..+.+..+++...++.++||.|-. + +.. ..++++.|.++| .+.+.+ ..+|+|| ..
T Consensus 69 -~~~~~~~~~~~~A~~~~VPV~lHL--D---H~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~ 142 (340)
T cd00453 69 -GAISGAHHVHQMAEHYGVPVILHT--D---HCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICS 142 (340)
T ss_pred -hHHHHHHHHHHHHHHCCCCEEEEc--C---CCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHH
Confidence 134456678888888899999953 1 222 247899999999 999887 4688876 56
Q ss_pred HHHHHHHHcCCCeEE---Ee---------C------CCChHHHHHHHHHhCC-c--eEEE-E---ecCCccCC-CCCCCc
Q 021527 183 SLQKEAMKNKIELVL---FT---------T------PTTPTDRMKAIVEASE-G--FVYL-V---SSIGVTGA-RASISG 236 (311)
Q Consensus 183 ~~~~~~~~~gi~~I~---li---------s------p~t~~eri~~i~~~a~-g--fiY~-v---s~~G~TG~-~~~~~~ 236 (311)
++.+.++..|+.+=- -+ . --|.++...+..+... . ...+ + +..|++-. ...++
T Consensus 143 ~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~- 221 (340)
T cd00453 143 KYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLT- 221 (340)
T ss_pred HHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccC-
Confidence 788888888773210 01 0 0223444555554322 2 2223 2 34444321 12233
Q ss_pred hHHHHHHHHhhcC---------CCcEEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 237 HVQTLLREIKESS---------TKPVAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 237 ~~~~~l~~vk~~~---------~~Pv~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+.++++++.+ ++|++. |.|+. .|+++++.+.|.-=+=|+|.+....
T Consensus 222 --~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~-~e~~~~ai~~Gi~KiNi~Te~~~A~ 279 (340)
T cd00453 222 --PTILRDSQEYVSKKHNLPHNSLNFVFHGGSGST-AQEIKDSVSYGVVKMNIDTDTQWAT 279 (340)
T ss_pred --HHHHHHHHHHHHhhcccCCCCCceEEeCCCCCC-HHHHHHHHHcCCeEEEcccHHHHHH
Confidence 35677777765 788766 66775 6999999999999999999876544
|
This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.35 Score=44.43 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
.++.+..+.+++. ...+..=+.+|+. +.+.+.++.|+++|+|+|++..-+..+. .+
T Consensus 126 ~~l~eiv~avr~~-~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~~~~~g~~-----------------ad---- 181 (233)
T cd02911 126 ERLSEFIKALKET-GVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVDAMDPGNH-----------------AD---- 181 (233)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEECcCCCCCC-----------------Cc----
Confidence 3567777777664 4556666677764 6788999999999999999843322111 12
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
++.+++++ .++||+..+-.+ ..+ .+.++.+.|+|+|.+.
T Consensus 182 ~~~I~~i~--~~ipVIgnGgI~-----s~e-da~~~l~~GaD~VmiG 220 (233)
T cd02911 182 LKKIRDIS--TELFIIGNNSVT-----TIE-SAKEMFSYGADMVSVA 220 (233)
T ss_pred HHHHHHhc--CCCEEEEECCcC-----CHH-HHHHHHHcCCCEEEEc
Confidence 24677776 679998865322 123 3444555899999886
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.81 Score=41.47 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=89.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH----HHHhhccCCCcEEEEecC
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM----LKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~----i~~ir~~~~iPiilm~Y~ 148 (311)
.+..+.....++.+.+.|+|.+.+-+|.||. .++ ...+.+.++.++. ++..|+ ....+.+ +..
T Consensus 63 ~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~-----~~~------~~~~~~~~~~~~~~~~~v~~ak~-~g~~v~~-~~~ 129 (237)
T PF00682_consen 63 RANEEDIERAVEAAKEAGIDIIRIFISVSDL-----HIR------KNLNKSREEALERIEEAVKYAKE-LGYEVAF-GCE 129 (237)
T ss_dssp ESCHHHHHHHHHHHHHTTSSEEEEEEETSHH-----HHH------HHTCSHHHHHHHHHHHHHHHHHH-TTSEEEE-EET
T ss_pred eehHHHHHHHHHhhHhccCCEEEecCcccHH-----HHH------HhhcCCHHHHHHHHHHHHHHHHh-cCCceEe-Ccc
Confidence 4677777777888889999999999888773 221 1234444444444 444443 2333322 221
Q ss_pred cchhccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcC--CCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 149 NPILKRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNK--IELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 149 n~i~~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~g--i~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+ ...+.. .++++.+.++|+|.+.++| +.+++..++...+++.- +.+-+-...+.--.-...++....|.-
T Consensus 130 ~-~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~ 208 (237)
T PF00682_consen 130 D-ASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGAD 208 (237)
T ss_dssp T-TGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-S
T ss_pred c-cccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCC
Confidence 1 222333 3566778889999999998 55778878777777643 233333343333333444555667887
Q ss_pred EE-EecCCccCCCCCCCchHHHHHHHHh
Q 021527 220 YL-VSSIGVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 220 Y~-vs~~G~TG~~~~~~~~~~~~l~~vk 246 (311)
++ +|..| -|.+.+. .++++++..++
T Consensus 209 ~id~t~~G-lG~~~Gn-~~le~lv~~L~ 234 (237)
T PF00682_consen 209 RIDGTLGG-LGERAGN-APLEELVAALE 234 (237)
T ss_dssp EEEEBGGG-GSSTTSB--BHHHHHHHHH
T ss_pred EEEccCcc-CCCCCCC-ccHHHHHHHHh
Confidence 77 44444 4555443 34556665543
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.6 Score=48.99 Aligned_cols=147 Identities=15% Similarity=0.202 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC----cchh-
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY----NPIL- 152 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~----n~i~- 152 (311)
...++++...++|+|++.+. |++-|=+-++ ..++.+++.-..--+.++|. ++.-
T Consensus 628 v~~~~i~~a~~~Gid~~rif----d~lnd~~~~~-----------------~~i~~vk~~g~~~~~~i~ytg~~~d~~~~ 686 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIF----DSLNWVENMR-----------------VAIDAVRETGKIAEAAICYTGDILDPARA 686 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEe----ccCChHHHHH-----------------HHHHHHHHcCCeEEEEEEEEecCCCCCCC
Confidence 34456889999999999996 4544522222 23333443322223455565 2221
Q ss_pred ccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEE-Ee
Q 021527 153 KRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYL-VS 223 (311)
Q Consensus 153 ~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs 223 (311)
.+..+ ++++.+.++|+|.+-+.| +.+++..++...+++. ++.+-+-...+.--.-...++....|..++ ++
T Consensus 687 ~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~a 766 (1146)
T PRK12999 687 KYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVA 766 (1146)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEec
Confidence 13333 455678889999999998 5567888888877754 554334444443333344444555677666 34
Q ss_pred cCCccCCCCCCCchHHHHHHHHhh
Q 021527 224 SIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
..|..| +++ ++.+++++..++.
T Consensus 767 v~glg~-~tg-n~~le~vv~~L~~ 788 (1146)
T PRK12999 767 VASMSG-LTS-QPSLNSIVAALEG 788 (1146)
T ss_pred chhhcC-CcC-CHHHHHHHHHHHh
Confidence 444433 333 3446666666653
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.9 Score=45.04 Aligned_cols=160 Identities=15% Similarity=0.218 Sum_probs=91.5
Q ss_pred ccEEEEE----eCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc
Q 021527 63 VALIPYI----TAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP 136 (311)
Q Consensus 63 ~~li~yi----~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~ 136 (311)
-.|..++ .+||-.+ +-...+++...++|+|++=+. |++-|-+.+..+ ++.+|+
T Consensus 76 t~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rif----d~lnd~~n~~~~-----------------i~~~k~ 134 (596)
T PRK14042 76 TQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVF----DALNDARNLKVA-----------------IDAIKS 134 (596)
T ss_pred CceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEc----ccCcchHHHHHH-----------------HHHHHH
Confidence 3455556 6777665 346668888899999999996 566665444433 333333
Q ss_pred cCCCcEEEEecC-cchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHH
Q 021527 137 QMSCPIALFTYY-NPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDR 207 (311)
Q Consensus 137 ~~~iPiilm~Y~-n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~er 207 (311)
.-..-...++|. +|++ ..+ ++++.+.+.|+|.+.+.| +.+++..++...+++. ++.+-+-...+.--.-
T Consensus 135 ~G~~~~~~i~yt~sp~~--t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~ 212 (596)
T PRK14042 135 HKKHAQGAICYTTSPVH--TLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLAS 212 (596)
T ss_pred cCCEEEEEEEecCCCCC--CHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHH
Confidence 222222333343 4443 334 455667889999999998 5567888888877763 5443333333333233
Q ss_pred HHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHHhh
Q 021527 208 MKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 208 i~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
...++....|..++ .+..|..| .++ ++.+++++.-++.
T Consensus 213 an~laAieaGad~iD~ai~glGg-~tG-n~~tE~lv~~L~~ 251 (596)
T PRK14042 213 ICHYEAVLAGCNHIDTAISSFSG-GAS-HPPTEALVAALTD 251 (596)
T ss_pred HHHHHHHHhCCCEEEeccccccC-CCC-cHhHHHHHHHHHh
Confidence 33444455666666 33333333 333 3445666666654
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.4 Score=39.61 Aligned_cols=186 Identities=12% Similarity=0.093 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
++.++.++.+.+.|+..+.+..-..+|..+- . .++++.+.++.++.++++.+. . +.+ .
T Consensus 65 eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~-~---------------~~~~~~i~~~~~~~~i~~~~~-~-g~~----~ 122 (296)
T TIGR00433 65 DEVLEEARKAKAAGATRFCLVASGRGPKDRE-F---------------MEYVEAMVQIVEEMGLKTCAT-L-GLL----D 122 (296)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEecCCCChHH-H---------------HHHHHHHHHHHHhCCCeEEec-C-CCC----C
Confidence 4566777777778887765421112221110 0 122333333334455555332 1 111 2
Q ss_pred HHHHHHHHHcCCcEEEec-CC------------ChhhHHHHHHHHHHcCCCeEE--Ee-CCCChHHHHHHH---HHhCCc
Q 021527 157 DNFMSTVRDIGIRGLVVP-DV------------PLEETESLQKEAMKNKIELVL--FT-TPTTPTDRMKAI---VEASEG 217 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip-Dl------------p~ee~~~~~~~~~~~gi~~I~--li-sp~t~~eri~~i---~~~a~g 217 (311)
++.++.++++|++.+.+. |. .+++..+..+.++++|+.... ++ ...+.++..+.+ .+....
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~ 202 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLPPE 202 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCC
Confidence 678889999999998662 31 123344556778889997432 11 234444443322 222222
Q ss_pred eEEEEecCCccCCC--CCCCchH---HHHHHHHhhcCC-CcEEEeeCC--CCHHHHHH-HHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGAR--ASISGHV---QTLLREIKESST-KPVAVGFGI--SKPEHVQQ-VAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~--~~~~~~~---~~~l~~vk~~~~-~Pv~vGfGI--st~e~v~~-v~~~GADGvIVGSaiv~ 284 (311)
.+.+-......|+. ...+++. .+.+...|...+ ..|-++.|= .-.+..++ .+..|||++++|-.+..
T Consensus 203 ~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~ 278 (296)
T TIGR00433 203 SVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTT 278 (296)
T ss_pred EEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccC
Confidence 23221111122221 1112233 344555555543 223333332 11233344 68899999999988876
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.21 Score=51.11 Aligned_cols=67 Identities=27% Similarity=0.293 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.+|.+++.+..-.+|-+-+.. +....+.+.++++|+.. +.+| +.++|.|+|+++.+.++|||+++||
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~-------g~~~~~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQ-------GDSIYQLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCC-------CCcHHHHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence 488888877655555443322 22333457899999976 4666 7789999999999999999999997
|
|
| >cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.1 Score=40.11 Aligned_cols=183 Identities=19% Similarity=0.277 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHH---HHHHHHHHcCCCHHHH-HHHHHHhhccCCCcEEEEecCc-ch
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQ---AAATRSLARGTNFNAI-LSMLKEVVPQMSCPIALFTYYN-PI 151 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq---~a~~~Al~~G~~~~~~-~~~i~~ir~~~~iPiilm~Y~n-~i 151 (311)
|-|....+...+.|+|+||+++=.+ .||..+- ....|.-.....+.++ ++.+++++-... +.+ ++
T Consensus 13 ENT~~af~~A~~~Gad~vE~DV~~T---~Dg~~vv~HD~~l~r~t~~~~~v~~~t~~el~~l~~~~~-------~~~~~i 82 (220)
T cd08579 13 ENTLEALEAAIKAKPDYVEIDVQET---KDGQFVVMHDANLKRLAGVNKKVWDLTLEELKKLTIGEN-------GHGAKI 82 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEEeeEc---CCCCEEEEcCCchhhccCCCCChhhCCHHHHhcCcCccC-------CCCCcC
Confidence 7788888888999999999965542 2442220 0000100001112111 233333321110 111 11
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCC-----hhh-HHHHHHHHHHcCC-CeEEEeCCCChHHHHHHHHHhCCce--EEEE
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVP-----LEE-TESLQKEAMKNKI-ELVLFTTPTTPTDRMKAIVEASEGF--VYLV 222 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp-----~ee-~~~~~~~~~~~gi-~~I~lisp~t~~eri~~i~~~a~gf--iY~v 222 (311)
- -.+++++.+...++ ++.+ |+. .++ ...+.+.++++|+ +.+.+.+.+ .+-++.+.+...++ .|+.
T Consensus 83 p--tL~evl~~~~~~~~-~l~i-EiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~--~~~l~~~~~~~p~~~~~~~~ 156 (220)
T cd08579 83 P--SLDEYLALAKGLKQ-KLLI-ELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLD--YRVIEKVKKLDPKIKTGYIL 156 (220)
T ss_pred C--CHHHHHHHhhccCC-eEEE-EECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCC--HHHHHHHHHHCCCCeEEEEE
Confidence 1 23667776654333 2222 211 112 3456777888887 455555543 34444444444432 2222
Q ss_pred ec-CC-c--cCCC---CCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 223 SS-IG-V--TGAR---ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 223 s~-~G-~--TG~~---~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
.. .+ . .+.. -....-..++++++++. +++| .-+.+++++.++.+.++|+||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~v-~~wtvn~~~~~~~~~~~Gvd~i~ 216 (220)
T cd08579 157 PFNIGNLPKTNVDFYSIEYSTLNKEFIRQAHQN-GKKV-YVWTVNDPDDMQRYLAMGVDGII 216 (220)
T ss_pred ecccCcccccCceEEeeehhhcCHHHHHHHHHC-CCEE-EEEcCCCHHHHHHHHHcCCCEEe
Confidence 11 00 0 0000 00011123667877774 6787 55689999999999999999986
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor. |
| >cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=95.35 E-value=2.8 Score=40.32 Aligned_cols=154 Identities=13% Similarity=0.225 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCC-C--CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc-EEEE
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVP-Y--SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP-IALF 145 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~P-f--sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP-iilm 145 (311)
+...+.++.+.+.|+..+-| |++ - .|+.. ||++. +.|+.+|+.+ | ++++
T Consensus 54 d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~------------------~air~iK~~~--p~l~vi 113 (320)
T cd04823 54 DELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVC------------------RAIRAIKEAF--PELGII 113 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHH------------------HHHHHHHHhC--CCcEEE
Confidence 57899999999999998776 772 1 45543 34432 2455566554 3 3343
Q ss_pred e------cCc----chhccC-H------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC-----
Q 021527 146 T------YYN----PILKRG-V------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT----- 200 (311)
Q Consensus 146 ~------Y~n----~i~~~g-~------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis----- 200 (311)
+ |.. .+...| + +...+. .+++|+|-|--.|+=.......++.+.++|+..+..++
T Consensus 114 ~DVclc~YT~hGHcGil~~~~idND~Tl~~L~~~Avs~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKy 193 (320)
T cd04823 114 TDVALDPYTSHGHDGIVRDGGILNDETVEVLCKQALVQAEAGADIVAPSDMMDGRIGAIREALDAEGFTNVSILSYAAKY 193 (320)
T ss_pred EeeeccCCCCCCcceeccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccchhhHHHHHHHHHHHCCCCCCceeechHHh
Confidence 2 221 111111 1 222332 36799999766677666777789999999996665433
Q ss_pred ---------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc
Q 021527 201 ---------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP 252 (311)
Q Consensus 201 ---------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P 252 (311)
|....+-+++... ..+|...++=.- .+ ...+.|+++|+.+++|
T Consensus 194 aS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKP-------al--~YLDIi~~~k~~~~lP 264 (320)
T cd04823 194 ASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKP-------GM--PYLDIIRRVKDEFGVP 264 (320)
T ss_pred hhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcC-------Cc--hHHHHHHHHHHhcCCC
Confidence 2222233333322 256766554111 11 2568899999999999
Q ss_pred EEEeeCCC
Q 021527 253 VAVGFGIS 260 (311)
Q Consensus 253 v~vGfGIs 260 (311)
|+ ..-||
T Consensus 265 va-aYqVS 271 (320)
T cd04823 265 TF-AYQVS 271 (320)
T ss_pred EE-EEEcc
Confidence 94 44443
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.45 Score=46.47 Aligned_cols=83 Identities=16% Similarity=0.308 Sum_probs=54.4
Q ss_pred HHHHHHHHHHCCCCEEEEcCC-CCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc---
Q 021527 79 TAEALKLLDSCGSDIIELGVP-YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR--- 154 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~P-fsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~--- 154 (311)
..+.++.+.+.|||.|=+|.+ |. .|.-+.-++.+++-+.++...+. +..+.+-. |.+.+.
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~-------------~R~~a~nfs~~~l~e~i~~ah~~-gkk~~V~~--N~~~~~~~~ 78 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFG-------------LRRRALNFSVEDLAEAVELAHSA-GKKVYVAV--NTLLHNDEL 78 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccc-------------cccccccCCHHHHHHHHHHHHHc-CCeEEEEe--ccccccchh
Confidence 358899999999999999966 41 12212346777766666665544 33333322 332221
Q ss_pred -CHHHHHHHHHHcCCcEEEecCCC
Q 021527 155 -GVDNFMSTVRDIGIRGLVVPDVP 177 (311)
Q Consensus 155 -g~~~fi~~~~~aGadGviipDlp 177 (311)
...++++.+.+.|+|+||+.|+.
T Consensus 79 ~~~~~~l~~l~e~GvDaviv~Dpg 102 (347)
T COG0826 79 ETLERYLDRLVELGVDAVIVADPG 102 (347)
T ss_pred hHHHHHHHHHHHcCCCEEEEcCHH
Confidence 23579999999999999998864
|
|
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=2.4 Score=39.33 Aligned_cols=175 Identities=17% Similarity=0.242 Sum_probs=109.8
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
.+||. ++.+...+++|||.|=+= |--|---||. + .+..+++..+.|+-+-++.+
T Consensus 22 ~~Pd~---v~aA~~a~~aGAdgITvH-----lReDrRHI~d------------~----Dv~~L~~~~~~~lNlE~a~~-- 75 (239)
T PRK05265 22 NYPDP---VRAALIAEQAGADGITVH-----LREDRRHIRD------------R----DVRLLRETLKTELNLEMAAT-- 75 (239)
T ss_pred CCCCH---HHHHHHHHHcCCCEEEec-----CCCCcccCCH------------H----HHHHHHHhcCCCEEeccCCC--
Confidence 45654 667777888999999883 3445434442 3 34445555556777766543
Q ss_pred hccCHHHHHHHHHHcCCcEEE-ecCCCh--------------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLV-VPDVPL--------------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGvi-ipDlp~--------------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++|++.+.+.-.+-+. +||-+- +....+.+.+++.||.+.+|+.|+ .+.++...+.
T Consensus 76 -----~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~--~~qi~~A~~~-- 146 (239)
T PRK05265 76 -----EEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPD--PEQIEAAAEV-- 146 (239)
T ss_pred -----HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHh--
Confidence 7899999888776554 465442 235667888999999999999887 4555544343
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhc------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKES------STKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
|..++.-.+|...... .....+.+++++.. .++-|-+|-|++ .+|+..+... +-+=+-||-+|+.
T Consensus 147 GAd~VELhTG~yA~a~--~~~~~~el~~~~~aa~~a~~lGL~VnAGHgLn-y~Nv~~i~~ip~i~EvnIGHsiia 218 (239)
T PRK05265 147 GADRIELHTGPYADAK--TEAEAAELERIAKAAKLAASLGLGVNAGHGLN-YHNVKPIAAIPGIEELNIGHAIIA 218 (239)
T ss_pred CcCEEEEechhhhcCC--CcchHHHHHHHHHHHHHHHHcCCEEecCCCCC-HHhHHHHhhCCCCeEEccCHHHHH
Confidence 3333333333322211 11112234554432 367888999997 7999888652 3577889987775
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.8 Score=42.66 Aligned_cols=66 Identities=23% Similarity=0.327 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+++..+.+..-.++-+-+..|. ...+.++++++|+.. +++| +++.|.|.|.++.+.++|||+|-||
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~-------~~~~~~~i~~ik~~~p~~~v-~agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGH-------QEKMLEALRAVRALDPGVPI-VAGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCc-------cHHHHHHHHHHHHHCCCCeE-EeeccCCHHHHHHHHHcCCCEEEEC
Confidence 4445554444444444332221 345778999999976 6777 7789999999999999999999855
|
|
| >cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.29 Score=41.07 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-C-CCcEEEeeCCC-
Q 021527 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-S-TKPVAVGFGIS- 260 (311)
Q Consensus 184 ~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~-~~Pv~vGfGIs- 260 (311)
+...++.+|++++.+-...++++-++...+....+|-+-+.++.| .+...+.++.+|+. . ++||++|+++.
T Consensus 19 v~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~------~~~~~~~~~~l~~~gl~~v~vivGG~~~i 92 (128)
T cd02072 19 LDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHG------EIDCKGLREKCDEAGLKDILLYVGGNLVV 92 (128)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCC------HHHHHHHHHHHHHCCCCCCeEEEECCCCC
Confidence 445567788887766554555555555444433444333333221 23455677777775 3 78999999963
Q ss_pred CHH----HHHHHHHcCCcEEE
Q 021527 261 KPE----HVQQVAGWGADGVI 277 (311)
Q Consensus 261 t~e----~v~~v~~~GADGvI 277 (311)
.++ +..++.++|.|.+.
T Consensus 93 ~~~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 93 GKQDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred ChhhhHHHHHHHHHcCCCEEE
Confidence 223 34669999998874
|
Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 311 | ||||
| 1rd5_A | 262 | Crystal Structure Of Tryptophan Synthase Alpha Chai | 2e-90 | ||
| 1tjr_A | 261 | Crystal Structure Of Wild-Type Bx1 Complexed With A | 1e-87 | ||
| 2dzu_A | 248 | Structure Of Mutant Tryptophan Synthase Alpha-Subun | 5e-49 | ||
| 2dzs_A | 248 | Structure Of Mutant Tryptophan Synthase Alpha-Subun | 6e-49 | ||
| 2dzv_A | 248 | Structure Of Mutant Tryptophan Synthase Alpha-Subun | 6e-49 | ||
| 2dzw_A | 248 | Structure Of Mutant Tryptophan Synthase Alpha-Subun | 7e-49 | ||
| 1geq_A | 248 | Entropic Stabilization Of The Tryptophan Synthase A | 8e-49 | ||
| 2dzt_A | 248 | Structure Of Mutant Tryptophan Synthase Alpha-Subun | 8e-49 | ||
| 2ekc_A | 262 | Structural Study Of Project Id Aq_1548 From Aquifex | 2e-48 | ||
| 2dzx_A | 248 | Structure Of Mutant Tryptophan Synthase Alpha-Subun | 2e-48 | ||
| 2dzp_A | 248 | Structure Of Mutant Tryptophan Synthase Alpha-Subun | 3e-48 | ||
| 2e09_A | 248 | Structure Of Mutant Tryptophan Synthase Alpha-Subun | 4e-48 | ||
| 1ujp_A | 271 | Crystal Structure Of Tryptophan Synthase A-Subunit | 2e-42 | ||
| 3vnd_A | 267 | Crystal Structure Of Tryptophan Synthase Alpha-subu | 6e-41 | ||
| 1ttp_A | 268 | Tryptophan Synthase (E.C.4.2.1.20) In The Presence | 5e-40 | ||
| 3pr2_A | 266 | Tryptophan Synthase Indoline Quinonoid Structure Wi | 5e-40 | ||
| 1qop_A | 268 | Crystal Structure Of Wild-type Tryptophan Synthase | 6e-40 | ||
| 1kfb_A | 268 | Crystal Structure Of Alphat183v Mutant Of Tryptopha | 2e-39 | ||
| 1a5a_A | 268 | Cryo-Crystallography Of A True Substrate, Indole-3- | 2e-39 | ||
| 1kfc_A | 268 | Crystal Structure Of Alphat183v Mutant Of Tryptopha | 2e-39 | ||
| 1xc4_A | 268 | Crystal Structure Of Wild-Type Tryptophan Synthase | 3e-39 | ||
| 3nav_A | 271 | Crystal Structure Of An Alpha Subunit Of Tryptophan | 4e-39 | ||
| 1v7y_A | 268 | Crystal Structure Of Tryptophan Synthase Alpha-Subu | 5e-39 | ||
| 3tha_A | 252 | Tryptophan Synthase Subunit Alpha From Campylobacte | 5e-39 | ||
| 1xcf_A | 268 | Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE | 3e-38 |
| >pdb|1RD5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha Chain Homolog Bx1: A Member Of The Chemical Plant Defense System Length = 262 | Back alignment and structure |
|
| >pdb|1TJR|A Chain A, Crystal Structure Of Wild-Type Bx1 Complexed With A Sulfate Ion Length = 261 | Back alignment and structure |
|
| >pdb|2DZU|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit (D110n) From A Hyperthermophile, Pyrococcus Furiosus Length = 248 | Back alignment and structure |
|
| >pdb|2DZS|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit (E103a) From A Hyperthermophile, Pyrococcus Furiosus Length = 248 | Back alignment and structure |
|
| >pdb|2DZV|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit (D146a) From A Hyperthermophile, Pyrococcus Furiosus Length = 248 | Back alignment and structure |
|
| >pdb|2DZW|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit (E244a) From A Hyperthermophile, Pyrococcus Furiosus Length = 248 | Back alignment and structure |
|
| >pdb|1GEQ|A Chain A, Entropic Stabilization Of The Tryptophan Synthase A-Subunit From A Hyperthermophile, Pyrococcus Furiosus: X-Ray Analysis And Calorimetry Length = 248 | Back alignment and structure |
|
| >pdb|2DZT|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit (D110a) From A Hyperthermophile, Pyrococcus Furiosus Length = 248 | Back alignment and structure |
|
| >pdb|2EKC|A Chain A, Structural Study Of Project Id Aq_1548 From Aquifex Aeolicus Vf5 Length = 262 | Back alignment and structure |
|
| >pdb|2DZX|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit (E131- 132a) From A Hyperthermophile, Pyrococcus Furiosus Length = 248 | Back alignment and structure |
|
| >pdb|2DZP|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit (D17n) From A Hyperthermophile, Pyrococcus Furiosus Length = 248 | Back alignment and structure |
|
| >pdb|2E09|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit (E74a) From A Hyperthermophile, Pyrococcus Furiosus Length = 248 | Back alignment and structure |
|
| >pdb|1UJP|A Chain A, Crystal Structure Of Tryptophan Synthase A-Subunit From Thermus Thermophilus Hb8 Length = 271 | Back alignment and structure |
|
| >pdb|3VND|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-subunit From The Psychrophile Shewanella Frigidimarina K14-2 Length = 267 | Back alignment and structure |
|
| >pdb|1TTP|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of Cesium, Room Temperature Length = 268 | Back alignment and structure |
|
| >pdb|3PR2|A Chain A, Tryptophan Synthase Indoline Quinonoid Structure With F9 Inhibitor In Alpha Site Length = 266 | Back alignment and structure |
|
| >pdb|1QOP|A Chain A, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Propanol Phosphate Length = 268 | Back alignment and structure |
|
| >pdb|1KFB|A Chain A, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium With Indole Glycerol Phosphate Length = 268 | Back alignment and structure |
|
| >pdb|1A5A|A Chain A, Cryo-Crystallography Of A True Substrate, Indole-3-Glycerol Phosphate, Bound To A Mutant (Alphad60n) Tryptophan Synthase Alpha2beta2 Complex Reveals The Correct Orientation Of Active Site Alpha Glu 49 Length = 268 | Back alignment and structure |
|
| >pdb|1KFC|A Chain A, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium With Indole Propanol Phosphate Length = 268 | Back alignment and structure |
|
| >pdb|1XC4|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase Alpha-Subunits From Escherichia Coli Length = 268 | Back alignment and structure |
|
| >pdb|3NAV|A Chain A, Crystal Structure Of An Alpha Subunit Of Tryptophan Synthase From Vibrio Cholerae O1 Biovar El Tor Str. N16961 Length = 271 | Back alignment and structure |
|
| >pdb|1V7Y|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit From Escherichia Coli At Room Temperature Length = 268 | Back alignment and structure |
|
| >pdb|3THA|A Chain A, Tryptophan Synthase Subunit Alpha From Campylobacter Jejuni. Length = 252 | Back alignment and structure |
|
| >pdb|1XCF|A Chain A, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA- Subunits From Escherichia Coli Length = 268 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Length = 262 | Back alignment and structure |
|---|
Score = 381 bits (982), Expect = e-135
Identities = 152/264 (57%), Positives = 202/264 (76%), Gaps = 4/264 (1%)
Query: 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLAD 106
+ +++T L +GK A IPYITAGDPDL+TTAEAL+LLD CG+D+IELGVP SDP D
Sbjct: 2 SRPVSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYID 61
Query: 107 GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDI 166
GP+IQA+ R+LA GT +A+L ML+EV P++SCP+ L +YY PI+ R + ++
Sbjct: 62 GPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKM----KEA 117
Query: 167 GIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226
G+ GL+VPD+P SL EA N +ELVL TTP P DRMK I +ASEGFVYLVS G
Sbjct: 118 GVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNG 177
Query: 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286
VTG RA+++ V++L++E+K+ + KPVAVGFGISKPEHV+Q+A WGADGVI+GSAMV+ L
Sbjct: 178 VTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQL 237
Query: 287 GEAQSPEEGLKELEKFAKSLKSAL 310
GEA SP++GL+ LE++A+ +K+AL
Sbjct: 238 GEAASPKQGLRRLEEYARGMKNAL 261
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Length = 268 | Back alignment and structure |
|---|
Score = 378 bits (972), Expect = e-133
Identities = 89/263 (33%), Positives = 139/263 (52%), Gaps = 2/263 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
F +L + + A +P++T GDP + + + + L G+D +ELGVP+SDPLADGP
Sbjct: 4 YENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A R+ A G ML + + PI L Y N + G+D F + +G+
Sbjct: 64 IQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
++V DVP+EE+ ++ A+++ I + P D ++ + G+ YL+S GVT
Sbjct: 124 DSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVT 183
Query: 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
GA + + L+ ++KE P GFGIS PE V GA G I GSA+VK++ +
Sbjct: 184 GAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEK 243
Query: 289 -AQSPEEGLKELEKFAKSLKSAL 310
SP++ L EL F ++K+A
Sbjct: 244 NLASPKQMLAELRSFVSAMKAAS 266
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} Length = 271 | Back alignment and structure |
|---|
Score = 377 bits (970), Expect = e-133
Identities = 88/262 (33%), Positives = 142/262 (54%), Gaps = 2/262 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
F RL + A +P++T GDP+ + ++ L G+D +ELG+P+SDPLADGP
Sbjct: 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPT 66
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A R+LA T + ++ ++ + PI L Y N + RG+D+F + G+
Sbjct: 67 IQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGV 126
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
+++ DVP E++ A K I+ + PT + ++A+ + +G+ YL+S GVT
Sbjct: 127 DSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVT 186
Query: 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
GA + V LL +++ P +GFGIS+P V+Q GA G I GSA+VK++
Sbjct: 187 GAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIET 246
Query: 289 -AQSPEEGLKELEKFAKSLKSA 309
+P + L EL F +++K A
Sbjct: 247 HLDNPAKQLTELANFTQAMKKA 268
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* Length = 271 | Back alignment and structure |
|---|
Score = 364 bits (937), Expect = e-128
Identities = 98/260 (37%), Positives = 150/260 (57%), Gaps = 3/260 (1%)
Query: 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVI 110
E F + + +G+ ALIPY+TAG P +A++ + +D++E+G+PYSDPL DGPVI
Sbjct: 4 LEAFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVI 62
Query: 111 QAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
Q A+ +L +G + L +++EV P+ L TY NP+L G + F + G G
Sbjct: 63 QRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATG 122
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
+++PD+P +E L + A + +E V PT+ R+ +V + GFVY VS GVTG
Sbjct: 123 VILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGM 182
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ 290
R + V+ L+R IK + PVAVGFG+S Q A ADGV+VGSA+V+ L E +
Sbjct: 183 RERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQAA--VADGVVVGSALVRALEEGR 240
Query: 291 SPEEGLKELEKFAKSLKSAL 310
S L+E+ + + L++
Sbjct: 241 SLAPLLQEIRQGLQRLEANP 260
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} Length = 252 | Back alignment and structure |
|---|
Score = 356 bits (917), Expect = e-125
Identities = 84/252 (33%), Positives = 147/252 (58%), Gaps = 4/252 (1%)
Query: 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQA 112
K + A + Y G P+L T+ L+ LD DI+ELGV YSDP+ADG +I
Sbjct: 4 MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIAD 63
Query: 113 AATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLV 172
AA +L +G + +++ +L + + + YYN I G++ F+ + +GI L+
Sbjct: 64 AAKIALDQGVDIHSVFELLARIKTKK--ALVFMVYYNLIFSYGLEKFVKKAKSLGICALI 121
Query: 173 VPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232
VP++ EE++ L KE + I L+ + TTP +R+K +V+ ++GF+YL++SIG+TG ++
Sbjct: 122 VPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKS 181
Query: 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP 292
+Q ++EI+ + P+ VGFGI + V+++ ADGVIVG+++VK + +
Sbjct: 182 VEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKV-ADGVIVGTSIVKCFKQG-NL 239
Query: 293 EEGLKELEKFAK 304
+ +K++E+ K
Sbjct: 240 DIIMKDIEEIFK 251
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Length = 248 | Back alignment and structure |
|---|
Score = 356 bits (917), Expect = e-125
Identities = 104/248 (41%), Positives = 142/248 (57%), Gaps = 3/248 (1%)
Query: 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA 119
+LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L
Sbjct: 2 FKDGSLIPYLTAGDPDKQSTLNFLLALDE-YAGAIELGIPFSDPIADGKTIQESHYRALK 60
Query: 120 RGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE 179
G ++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+
Sbjct: 61 NGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVF 120
Query: 180 ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQ 239
+ + A + I+ V P TP +R+K I + + GFVYLVS G TGAR I
Sbjct: 121 HAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAY 180
Query: 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
LLR K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE E + L
Sbjct: 181 DLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEK--GREATEFL 238
Query: 300 EKFAKSLK 307
+K + L
Sbjct: 239 KKKVEELL 246
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Length = 262 | Back alignment and structure |
|---|
Score = 351 bits (904), Expect = e-123
Identities = 102/263 (38%), Positives = 152/263 (57%), Gaps = 8/263 (3%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+++ FT LK++ + AL+ Y+ G PD T+ +A K + G+DI+E+G P+SDP+ADGP
Sbjct: 4 ISDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A +L G F +L + + + + P L TYYNPI + G++ F R+ GI
Sbjct: 64 IQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGI 123
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
G +VPD+P EE E L+ K + V PT+ R+K I EA++ Y VS G T
Sbjct: 124 DGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTGTT 183
Query: 229 GARASISG-HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287
GAR + ++ + E +E KPV VGFG+SK EH +++ + ADGV+VGSA+VKL G
Sbjct: 184 GAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHAREIGSF-ADGVVVGSALVKLAG 242
Query: 288 EAQSPEEGLKELEKFAKSLKSAL 310
+ +++L K LK L
Sbjct: 243 QK-----KIEDLGNLVKELKEGL 260
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 Length = 240 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 2e-11
Identities = 44/256 (17%), Positives = 77/256 (30%), Gaps = 62/256 (24%)
Query: 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
DP+ E L++L G+D + +G + G + +L M+
Sbjct: 16 DPNKDLPDEQLEILCESGTDAVIIGG--------------------SDGVTEDNVLRMMS 55
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFM------STVRD----------IGIRGLVVPDV 176
+V + P L + G D + S D L+ +
Sbjct: 56 KVR-RFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEE 114
Query: 177 PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE----GFVYLVSSIGVTGARA 232
+ E + K + D + A SE YL S +
Sbjct: 115 IVAEGYCIAN--PDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGVL----- 167
Query: 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP 292
G ++ + + T + G GI E +Q A AD ++VG+A+
Sbjct: 168 ---GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAV---------- 213
Query: 293 EEGLKELEKFAKSLKS 308
E K ++K
Sbjct: 214 YEDFDRALKTVAAVKG 229
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Length = 216 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 36/229 (15%), Positives = 66/229 (28%), Gaps = 32/229 (13%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
D T A + DIIE+G + +G A R L +L+ K
Sbjct: 11 DNQTMDSAYETTRLIAEEVDIIEVGTILC--VGEGV----RAVRDLKALYPHKIVLADAK 64
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK 192
+ D TV + + A +
Sbjct: 65 IADAG-------KILSRMCFEANAD--WVTVICCA---------DINTAKGALDVAKEFN 106
Query: 193 IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP 252
++ + T ++ + +A G V S A + T ++ + +
Sbjct: 107 GDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGF-K 165
Query: 253 VAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
V V G+ E + G I G ++ A SP E ++ ++
Sbjct: 166 VTVTGGL-ALEDLPLFKGIPIHVFIAGRSIRD----AASPVEAARQFKR 209
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Length = 207 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 6e-07
Identities = 44/231 (19%), Positives = 71/231 (30%), Gaps = 38/231 (16%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
DL +T AL+L DIIELG P A+G ++++ +K
Sbjct: 8 DLLSTEAALELAGKVAEYVDIIELGTPLI--KAEGL-----------------SVITAVK 48
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET-ESLQKEAMKN 191
+ P + T + G + V + T K A +
Sbjct: 49 KAHPDKIVFADMKTMDAG------ELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQAH 102
Query: 192 KIE-LVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST 250
+V R + + FV + + + G L E +
Sbjct: 103 NKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLDEQAK----PGFDLNGLLAAGEKAR 158
Query: 251 KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
P +V G+ K + V GA+ + G A+ A P KEL
Sbjct: 159 VPFSVAGGV-KVATIPAVQKAGAEVAVAGGAIYG----AADPAAAAKELRA 204
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* Length = 286 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 2e-06
Identities = 41/281 (14%), Positives = 68/281 (24%), Gaps = 36/281 (12%)
Query: 43 TASPTVGLAETFTRLKKQGK--VALIPYITAGDPDLSTTAEALKLLD---SCGSDIIELG 97
A P RL++ V +I DP EA++ G + L
Sbjct: 20 AAPPLWRPGRVLARLREHQPGPVHII------DPFKVPVTEAVEKAAELTRLGFAAVLLA 73
Query: 98 VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQMSCPIALFTYYNPILKRGV 156
S ++ T +L A +L G
Sbjct: 74 ---STDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPVVRGADALLLPALLGSGD 130
Query: 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK-NKIELVLFTTPTTPTDRMK------ 209
D F+ + E E L A+ + T P
Sbjct: 131 DYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDR 190
Query: 210 -AIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQV 268
V + GF + + H + L + + V + V +
Sbjct: 191 YLHVARAFGFHMVYLYSRNEHVPPEVVRHFRKGLGP-----DQVLFVSGNVRSGRQVTEY 245
Query: 269 AGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 309
GAD V A+ + + L + A +A
Sbjct: 246 LDSGADYVGFAGALEQ--------PDWRSALAEIAGRRPAA 278
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* Length = 234 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 3e-06
Identities = 29/236 (12%), Positives = 66/236 (27%), Gaps = 52/236 (22%)
Query: 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
DPD + T E +K + G+D + + + + ++++
Sbjct: 16 DPDRTNTDEIIKAVADSGTDAVMISG--------------------TQNVTYEKARTLIE 55
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFM---------------------STVRDIGIRGL 171
+V Q PI + + VD + +
Sbjct: 56 KVS-QYGLPIVVEPSDPSNVVYDVDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFT 114
Query: 172 VVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE---GFVYLVSSIGVT 228
+ + + E + + V + + E + T
Sbjct: 115 EIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGT 174
Query: 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284
+ V+ +L + + G GI E +++ AD +IVG+ + +
Sbjct: 175 YGNPELVAEVKKVLDKA------RLFYGGGIDSREKAREMLR-YADTIIVGNVIYE 223
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 44/238 (18%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
D + +A+ + + S D+IE+G + A+G +S L+
Sbjct: 14 DQTNLTDAVAVASNVASYVDVIEVGTILA--FAEGM-----------------KAVSTLR 54
Query: 133 EVVPQMSCPIAL------FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQK 186
P + + G D V + + +K
Sbjct: 55 HNHPNHILVCDMKTTDGGAILSRMAFEAGADWIT-----------VSAAAHIATIAACKK 103
Query: 187 EAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIK 246
A + E+ + KA V+ S A + +R++
Sbjct: 104 VADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLS 163
Query: 247 ESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304
+++ GI PE + G I G A+ A+ + E+ +
Sbjct: 164 ALGI-ELSITGGI-VPEDIYLFEGIKTKTFIAGRALAG----AEGQQTAAALREQIDR 215
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-05
Identities = 37/229 (16%), Positives = 68/229 (29%), Gaps = 29/229 (12%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
D S A+ S G+ D+IE G L G L L K
Sbjct: 13 DHSNLKGAITAAVSVGNEVDVIEAGTVCL--LQVGS----ELVEVLRS-------LFPDK 59
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK 192
+V C A T RG D T ++ ++ +K
Sbjct: 60 IIVADTKCADAGGTVAKNNAVRGAD--WMTCICSA------TIPTMKAARKAIEDINPDK 111
Query: 193 IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP 252
E+ + D+ + ++A S A + ++++ E
Sbjct: 112 GEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMG-FR 170
Query: 253 VAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
V+V G+ + ++ G I G + + A++P + +
Sbjct: 171 VSVTGGL-SVDTLKLFEGVDVFTFIAGRGITE----AKNPAGAARAFKD 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 9e-05
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 25/122 (20%)
Query: 12 HLKNP-HAHYLPRLPCHKSTLSLKRFTPMAA------LTASPTVGLAETFTRLKKQGKVA 64
HLKN H + L RF + + + + T +LK
Sbjct: 480 HLKNIEHPERMTLFR--MVFLDF-RF--LEQKIRHDSTAWNASGSILNTLQQLKFYKP-- 532
Query: 65 LIPYITAGDPDLSTTAEAL-KLLDSCGSDIIELGVPYSDPL-----ADGPVIQAAATRSL 118
YI DP A+ L ++I Y+D L A+ I A + +
Sbjct: 533 ---YICDNDPKYERLVNAILDFLPKIEENLIC--SKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 119 AR 120
R
Sbjct: 588 QR 589
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} Length = 272 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSALP 311
G+ + AG GAD V+VG +V + P + +L + P
Sbjct: 221 GVRGTADLLAYAGAGADAVLVGEGLVT----SGDPRAAVADL--VTAGTHPSCP 268
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 6e-04
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 226 GVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281
G T +G L+ + ++ V I PE +++ G G++VG A
Sbjct: 163 GYTPYSRQEAGPDVALIEALCKAGI-AVIAEGKIHSPEEAKKINDLGVAGIVVGGA 217
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 100.0 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 100.0 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 100.0 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 100.0 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 100.0 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 100.0 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 100.0 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 100.0 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 100.0 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 100.0 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 99.97 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 99.95 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 99.94 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.94 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 99.93 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 99.92 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 99.92 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 99.88 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 99.85 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 99.82 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 99.81 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 99.81 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 99.8 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 99.8 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.8 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.78 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.74 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 99.74 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.73 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.73 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.73 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 99.73 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.72 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.71 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 99.69 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 99.69 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.64 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 99.63 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 99.62 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.61 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.58 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.52 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 99.52 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 99.52 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.5 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.48 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.46 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 99.45 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 99.4 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.39 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 99.38 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.36 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 99.36 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 99.35 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 99.35 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.34 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 99.34 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.33 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.32 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 99.3 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 99.3 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 99.29 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 99.28 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.27 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.23 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 99.23 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.21 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 99.19 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 99.16 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 99.14 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 99.13 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 99.13 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 99.12 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.11 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 99.1 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 99.1 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.1 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.08 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.06 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.05 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 99.05 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 99.03 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 98.99 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 98.92 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 98.91 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 98.84 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 98.82 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.82 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 98.82 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 98.8 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.79 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 98.78 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 98.76 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.76 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 98.75 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.75 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 98.74 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 98.74 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 98.73 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.72 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 98.72 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 98.71 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 98.71 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 98.7 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 98.69 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 98.68 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 98.67 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 98.67 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.66 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 98.65 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 98.65 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 98.63 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 98.63 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.61 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 98.61 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 98.61 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 98.61 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 98.59 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 98.59 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 98.58 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 98.57 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 98.57 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 98.56 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 98.55 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 98.52 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 98.52 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 98.51 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.48 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 98.48 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 98.46 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 98.39 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 98.35 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 98.31 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 98.27 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.27 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 98.25 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 98.25 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 98.22 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 98.21 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 98.21 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 98.21 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.2 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.18 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 98.17 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 98.16 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.16 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 98.14 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 98.14 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 98.11 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 98.1 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 98.09 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 98.09 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 98.08 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 98.08 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 98.08 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 98.07 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 98.06 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 98.05 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 98.04 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 98.04 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.03 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 98.02 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.01 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 98.0 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 97.98 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 97.97 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 97.96 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 97.95 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 97.94 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 97.91 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 97.88 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 97.88 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 97.86 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 97.85 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 97.84 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 97.83 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 97.82 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 97.82 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.82 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 97.8 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 97.78 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 97.78 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 97.75 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 97.75 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 97.75 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.74 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 97.72 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 97.71 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.7 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 97.69 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 97.69 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.68 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 97.67 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.67 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 97.67 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.67 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 97.66 | |
| 1dxe_A | 256 | 2-dehydro-3-deoxy-galactarate aldolase; class II a | 97.65 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 97.65 | |
| 1izc_A | 339 | Macrophomate synthase intermolecular diels-aldera; | 97.64 | |
| 2v5j_A | 287 | 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l | 97.63 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 97.63 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 97.63 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 97.61 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.61 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 97.61 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.6 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 97.59 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 97.55 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 97.52 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 97.52 | |
| 3mcm_A | 442 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine | 97.51 | |
| 2vws_A | 267 | YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher | 97.47 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 97.45 | |
| 3fst_A | 304 | 5,10-methylenetetrahydrofolate reductase; TIM barr | 97.44 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 97.44 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 97.41 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.41 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 97.38 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.36 | |
| 3qz6_A | 261 | HPCH/HPAI aldolase; structural genomics, PSI-biolo | 97.34 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 97.33 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 97.31 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 97.3 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.29 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 97.29 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 97.29 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 97.29 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 97.28 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 97.26 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 97.25 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 97.24 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 97.24 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 97.22 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 97.22 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 97.22 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 97.21 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 97.21 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 97.21 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 97.2 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.2 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 97.19 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 97.19 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 97.18 | |
| 1aw2_A | 256 | Triosephosphate isomerase; psychrophilic, vibrio m | 97.17 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 97.17 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.16 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 97.16 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 97.16 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 97.14 | |
| 1yya_A | 250 | Triosephosphate isomerase; riken structural genomi | 97.13 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 97.12 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 97.11 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 97.11 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 97.08 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 97.07 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 97.07 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 97.06 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 97.05 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 97.04 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 97.04 | |
| 1o5x_A | 248 | TIM, triosephosphate isomerase; 2- phosphoglycerat | 97.04 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 97.03 | |
| 1tre_A | 255 | Triosephosphate isomerase; intramolecular oxidored | 97.02 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 97.01 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 97.0 | |
| 3fst_A | 304 | 5,10-methylenetetrahydrofolate reductase; TIM barr | 96.99 | |
| 2j27_A | 250 | Triosephosphate isomerase glycosomal; TIM, 2PG, LO | 96.98 | |
| 3qw3_A | 255 | Orotidine-5-phosphate decarboxylase/orotate phosph | 96.97 | |
| 2yc6_A | 257 | Triosephosphate isomerase; glycolysis; HET: PGA; 1 | 96.95 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.92 | |
| 1b9b_A | 255 | TIM, protein (triosephosphate isomerase); thermoph | 96.9 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 96.9 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 96.89 | |
| 2btm_A | 252 | TIM, protein (triosephosphate isomerase); thermoph | 96.89 | |
| 2jgq_A | 233 | Triosephosphate isomerase; glycolysis, pentose shu | 96.87 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 96.86 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 96.85 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 96.8 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 96.8 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 96.79 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 96.78 | |
| 2i9e_A | 259 | Triosephosphate isomerase; 2.00A {Tenebrio molitor | 96.77 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 96.77 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 96.76 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 96.75 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 96.75 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 96.74 | |
| 3qst_A | 255 | Triosephosphate isomerase, putative; TIM barrel; 1 | 96.74 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 96.74 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 96.73 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.72 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 96.69 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 96.56 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 96.47 | |
| 3th6_A | 249 | Triosephosphate isomerase; alpha/beta barrel, embr | 96.47 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 96.47 | |
| 1ney_A | 247 | TIM, triosephosphate isomerase; yeast, DHAP, dihyd | 96.45 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 96.41 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 96.38 | |
| 2vxn_A | 251 | Triosephosphate isomerase; fatty acid biosynthesis | 96.34 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 96.34 | |
| 3kxq_A | 275 | Triosephosphate isomerase; ssgcid, NIH, niaid, SBR | 96.34 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 96.32 | |
| 3qw4_B | 453 | UMP synthase; N-terminal orotidine monophosphate d | 96.3 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.26 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 96.26 | |
| 3m9y_A | 254 | Triosephosphate isomerase; TIM barrel, glycolysis, | 96.26 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 96.25 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 96.25 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 96.23 | |
| 3elf_A | 349 | Fructose-bisphosphate aldolase; zinc enzyme, dihyd | 96.22 | |
| 1r2r_A | 248 | TIM, triosephosphate isomerase; closed loop confor | 96.22 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 96.22 | |
| 3eol_A | 433 | Isocitrate lyase; seattle structural center for in | 96.21 | |
| 2pcq_A | 283 | Putative dihydrodipicolinate synthase; lyase, lysi | 96.16 | |
| 1mo0_A | 275 | TIM, triosephosphate isomerase; structural genomic | 96.16 | |
| 3krs_A | 271 | Triosephosphate isomerase; ssgcid, SBRI, emerald b | 96.14 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 96.13 | |
| 3luf_A | 259 | Two-component system response regulator/ggdef doma | 96.12 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 96.11 | |
| 1m6j_A | 261 | TIM, TPI, triosephosphate isomerase; asymmetry, mo | 96.1 | |
| 2v5b_A | 244 | Triosephosphate isomerase; TIM, unfolding, monotct | 96.1 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 96.1 | |
| 3i4e_A | 439 | Isocitrate lyase; structural genomics, seattle str | 96.07 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 96.06 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 96.03 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 96.02 | |
| 1pv8_A | 330 | Delta-aminolevulinic acid dehydratase; porphobilin | 96.02 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 96.0 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.99 | |
| 4g1k_A | 272 | Triosephosphate isomerase; structural genomics, se | 95.99 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 95.96 | |
| 3s6d_A | 310 | Putative triosephosphate isomerase; seattle struct | 95.95 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 95.95 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 95.95 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 95.9 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 95.88 | |
| 1h7n_A | 342 | 5-aminolaevulinic acid dehydratase; lyase, aldolas | 95.87 | |
| 1l6s_A | 323 | Porphobilinogen synthase; dehydratase, lyase; HET: | 95.85 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 95.85 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 95.85 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 95.83 | |
| 2bmb_A | 545 | Folic acid synthesis protein FOL1; folate biosynth | 95.81 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 95.78 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 95.78 | |
| 1w1z_A | 328 | Delta-aminolevulinic acid dehydratase; synthase, t | 95.77 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 95.76 | |
| 3ijd_A | 315 | Uncharacterized protein; structural genomics, unkn | 95.75 | |
| 1dos_A | 358 | Aldolase class II; lyase, classii fructose 1,6-bis | 95.72 | |
| 3eww_A | 260 | Ompdecase, orotidine-5'-phosphate decarboxylase; T | 95.71 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 95.67 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 95.66 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 95.62 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 95.57 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 95.57 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 95.56 | |
| 1f8m_A | 429 | Isocitrate lyase, ICL; alpha-beta barrel, helix-sw | 95.54 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 95.52 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 95.5 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 95.48 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 95.48 | |
| 3txv_A | 450 | Probable tagatose 6-phosphate kinase; structural g | 95.47 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 95.45 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 95.37 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 95.36 | |
| 2ffc_A | 353 | Orotidine 5-monophosphate decarboxylase; PV-PF10_0 | 95.35 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 95.33 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 95.27 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 95.27 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 95.18 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 95.16 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 95.15 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.15 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 95.12 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 95.12 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 95.12 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 95.09 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 95.07 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 95.06 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 95.05 | |
| 2yxb_A | 161 | Coenzyme B12-dependent mutase; alpha/beta, structu | 95.02 | |
| 2fiq_A | 420 | Putative tagatose 6-phosphate kinase 1; structural | 95.01 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 94.99 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 94.95 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 94.93 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 94.92 | |
| 1w5q_A | 337 | Delta-aminolevulinic acid dehydratase; synthase, e | 94.91 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 94.91 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 94.89 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 94.89 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 94.88 | |
| 3ta6_A | 267 | Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba | 94.84 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 94.82 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.78 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 94.77 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.73 | |
| 3lg3_A | 435 | Isocitrate lyase; conserved, CD, proteomics eviden | 94.73 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 94.7 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 94.68 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 94.62 | |
| 2yxb_A | 161 | Coenzyme B12-dependent mutase; alpha/beta, structu | 94.61 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 94.61 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 94.6 | |
| 2xz9_A | 324 | Phosphoenolpyruvate-protein kinase (PTS system EI | 94.54 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 94.52 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 94.5 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 94.44 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 94.44 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 94.42 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 94.35 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 94.32 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 94.3 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 94.3 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 94.28 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 94.28 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 94.25 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.23 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 94.23 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 94.22 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 94.17 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 94.17 | |
| 2nwr_A | 267 | 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD | 94.14 | |
| 3ijd_A | 315 | Uncharacterized protein; structural genomics, unkn | 94.12 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 94.12 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 94.12 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 94.1 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 94.07 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 94.03 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 94.0 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 94.0 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 93.99 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 93.97 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 93.96 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 93.95 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 93.92 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 93.9 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 93.89 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 93.87 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 93.87 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 93.78 | |
| 3to5_A | 134 | CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p | 93.77 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 93.72 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 93.71 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 93.67 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 93.67 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 93.63 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 93.59 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 93.58 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 93.57 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 93.56 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 93.56 | |
| 3f6p_A | 120 | Transcriptional regulatory protein YYCF; unphospho | 93.56 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 93.55 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 93.53 | |
| 1sfl_A | 238 | 3-dehydroquinate dehydratase; 3-dehydroquinase, en | 93.53 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 93.49 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 93.49 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 93.49 | |
| 1ccw_A | 137 | Protein (glutamate mutase); coenzyme B12, radical | 93.47 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 93.47 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 93.45 | |
| 2otd_A | 247 | Glycerophosphodiester phosphodiesterase; structura | 93.45 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 93.43 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 93.41 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 93.36 | |
| 2pz0_A | 252 | Glycerophosphoryl diester phosphodiesterase; glyce | 93.33 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 93.33 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 93.28 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 93.28 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 93.24 | |
| 3rlg_A | 302 | Sphingomyelin phosphodiesterase D lisictox-alphai; | 93.22 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 93.17 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 93.17 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 93.16 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 93.15 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 93.15 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 93.14 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 93.08 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 93.06 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 93.02 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 92.98 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 92.97 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 92.97 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 92.97 | |
| 3g3d_A | 312 | UMP synthase, uridine 5'-monophosphate synthase; C | 92.96 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 92.92 | |
| 3gl9_A | 122 | Response regulator; beta-sheet, surrounded by alph | 92.91 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 92.84 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 92.83 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 92.82 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 92.82 | |
| 3f6p_A | 120 | Transcriptional regulatory protein YYCF; unphospho | 92.79 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 92.79 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 92.78 | |
| 3gdm_A | 267 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 92.75 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 92.75 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 92.74 | |
| 3gl9_A | 122 | Response regulator; beta-sheet, surrounded by alph | 92.74 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 92.71 |
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-73 Score=530.99 Aligned_cols=264 Identities=33% Similarity=0.613 Sum_probs=246.3
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|+||++.|++++++||++||+|+++|||+++.+.++++.|+++|+|+||||+|||||++|||+||+|+.|||++|+++++
T Consensus 4 m~ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~ 83 (271)
T 3nav_A 4 MNRYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDI 83 (271)
T ss_dssp CCHHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 127 ILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 127 ~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
+|++++++|++ .++|+++|+||||+++||+++|++.|+++|+||+|+||+|+||..++++.++++|++.|++++|+|++
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~ 163 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASD 163 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 99999999987 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+|++++++.+.||+|++|+.|+||.++..++++.++++++|+.+++|++|||||+++||+++....|||||||||+|++.
T Consensus 164 eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~~ 243 (271)
T 3nav_A 164 ETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKI 243 (271)
T ss_dssp HHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999997888899999999999999
Q ss_pred hhhcC-CchhHHHHHHHHHHHHHhhC
Q 021527 286 LGEAQ-SPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~l~~~~ 310 (311)
+++.. ++++.++++.+|+++|+.++
T Consensus 244 i~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (271)
T 3nav_A 244 IETHLDNPAKQLTELANFTQAMKKAT 269 (271)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHh
Confidence 98642 34567899999999999876
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-72 Score=521.15 Aligned_cols=264 Identities=35% Similarity=0.626 Sum_probs=246.5
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|+||++.|++++++||++||+|+++|||+++.+.++++.|+++|+|+||||+|||||++|||+||+++.|||++|+++++
T Consensus 2 m~ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~ 81 (267)
T 3vnd_A 2 SNRYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSD 81 (267)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHH
T ss_pred chHHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 127 ILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 127 ~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
+|++++++|++ .++|+++|+||||+++||+++|++.|+++|+||+|+||+|+||..++++.++++|++.|++++|+|++
T Consensus 82 ~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~ 161 (267)
T 3vnd_A 82 CFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADA 161 (267)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 99999999987 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+|++.+++.+.||+|++|+.|+||.++..++++.++++++|+.+++||+|||||+++||+++....|||||||||+|++.
T Consensus 162 eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~~ 241 (267)
T 3vnd_A 162 DTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKI 241 (267)
T ss_dssp HHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999997888999999999999999
Q ss_pred hhhcC-CchhHHHHHHHHHHHHHhhC
Q 021527 286 LGEAQ-SPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~l~~~~ 310 (311)
+++.. ++++.++++++|+++|+.++
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (267)
T 3vnd_A 242 IEAHQHDEATLLAKLAEFTTAMKAAT 267 (267)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhccChHHHHHHHHHHHHHHHhhC
Confidence 98642 34677899999999999874
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-72 Score=516.27 Aligned_cols=248 Identities=33% Similarity=0.636 Sum_probs=231.9
Q ss_pred ChhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 46 PTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 46 ~m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
-|+||++.|+ |++||+|+|+|||+++++.++++.|+++|+|+||||+|||||++|||+||+|+.|||++|++++
T Consensus 3 ~m~ri~~~f~------~~ali~yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~ 76 (252)
T 3tha_A 3 AMVDFRKFYK------ENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIH 76 (252)
T ss_dssp CCCCGGGSCS------SSEEEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHhc------CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHH
Confidence 3788998884 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
++|++++++|++ +|+++|+||||+++||.++|+++|+++|+||+|+||||+||..++++.++++|++.|++++|+|++
T Consensus 77 ~~~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~ 154 (252)
T 3tha_A 77 SVFELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPK 154 (252)
T ss_dssp HHHHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCH
T ss_pred HHHHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcH
Confidence 999999999976 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+|++++++.+.||+|++|+.|+||.++..+.++.++++++|+.+++|+++||||+++||++++.+. ||||||||+|++.
T Consensus 155 eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~~-ADGVIVGSAiVk~ 233 (252)
T 3tha_A 155 ERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKV-ADGVIVGTSIVKC 233 (252)
T ss_dssp HHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTTT-SSEEEECHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHhc-CCEEEECHHHHHH
Confidence 999999999999999999999999987777778899999999999999999999999999999875 9999999999999
Q ss_pred hhhcCCchhHHHHHHHHH
Q 021527 286 LGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~ 303 (311)
+++. ++++.++.+++|.
T Consensus 234 i~~~-~~~~~~~~~~~~~ 250 (252)
T 3tha_A 234 FKQG-NLDIIMKDIEEIF 250 (252)
T ss_dssp TTSS-CHHHHHHHHHHHC
T ss_pred HHhc-CHHHHHHHHHHHh
Confidence 9753 3444445554443
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-64 Score=467.55 Aligned_cols=253 Identities=38% Similarity=0.666 Sum_probs=225.4
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|++|+ .|++++++||++||+|+++|||+++.+.+.++.|+++ +|+||||+|||||++|||+||+|+.+||++|+++++
T Consensus 1 m~~~~-~f~~~~~~~~~~li~~i~~GdP~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~ 78 (271)
T 1ujp_A 1 MTTLE-AFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQG 78 (271)
T ss_dssp CCHHH-HHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHH-HHHHHHHcCCceEEEEecCCCCChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHH
Confidence 78999 9999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
++++++++|++.++|+++|+|||++++||.++|++.|+++|+||+|+||+|+||..++.+.++++|++.|++++|+++.+
T Consensus 79 ~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~e 158 (271)
T 1ujp_A 79 ALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDA 158 (271)
T ss_dssp HHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHH
T ss_pred HHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHH
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|++.+++.+.||+|++++.|+||.++..+.++.++++++|+.+++||++||||+|+||++++ .|||||||||+|++.+
T Consensus 159 ri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~ 236 (271)
T 1ujp_A 159 RIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRAL 236 (271)
T ss_dssp HHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhccc
Confidence 99999999999999999999999998877778899999999999999999999999999997 6799999999999988
Q ss_pred hhcCCchhHHHHHHHHHHHHHhhC
Q 021527 287 GEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
++. +.+++|+++++.++
T Consensus 237 ~~~-------~~~~~fv~~l~~~~ 253 (271)
T 1ujp_A 237 EEG-------RSLAPLLQEIRQGL 253 (271)
T ss_dssp HTT-------CCHHHHHHHHHHHH
T ss_pred chH-------HHHHHHHHHHHHHH
Confidence 531 35788888887653
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-62 Score=456.01 Aligned_cols=258 Identities=40% Similarity=0.706 Sum_probs=237.3
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|+||++.|+++|++||++||+|+++|||+++.+.++++.|+++|+|+||+|+|||||++|||+||+++.+||++|+++++
T Consensus 1 m~~~~~~f~~~~~~~~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~ 80 (262)
T 2ekc_A 1 MGRISDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFED 80 (262)
T ss_dssp CCHHHHHHHHHHHHTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHH
T ss_pred CchHHHHHHHHHhcCCceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 127 ILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 127 ~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
++++++++|+.+ ++|+++|+|||+++++|.++|++.++++|+||+++||+|+||..++.+.++++|++.|++++|++++
T Consensus 81 ~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~ 160 (262)
T 2ekc_A 81 VLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTR 160 (262)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCH
T ss_pred HHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 999999999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+|++.+++.+.||+|+++..|+||.++..+ +++.++++++|+.+++||++||||+++|+++++ ..|||||||||+|++
T Consensus 161 ~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~~-~~gADgvIVGSai~~ 239 (262)
T 2ekc_A 161 KRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHAREI-GSFADGVVVGSALVK 239 (262)
T ss_dssp HHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHHH-HTTSSEEEECHHHHH
T ss_pred HHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHH-HcCCCEEEECHHHHh
Confidence 999999999999999999999999998777 777899999999999999999999999999995 567999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHhhC
Q 021527 285 LLGEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
.+++ +..+++++|+++++.++
T Consensus 240 ~~~~-----~~~~~~~~~~~~~~~~~ 260 (262)
T 2ekc_A 240 LAGQ-----KKIEDLGNLVKELKEGL 260 (262)
T ss_dssp HHHT-----TCHHHHHHHHHHHHHTT
T ss_pred hhhh-----hhHHHHHHHHHHHHHHh
Confidence 8853 14678999999999875
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-61 Score=445.95 Aligned_cols=264 Identities=34% Similarity=0.621 Sum_probs=248.9
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|+||++.|+++++++|++|++||++|||+++.+.++++.|+++|+|+||+|+|||||++|||+||+++.+||++|++++.
T Consensus 1 m~~~~~~f~~~~~~~~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~ 80 (268)
T 1qop_A 1 MERYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQ 80 (268)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHH
T ss_pred CchHHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 127 ILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 127 ~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
++++++++|+. +++|+++|+||||++++|.++|++.+.++|+||+++||+|+|+..++.+.++++|++.+++++|+++.
T Consensus 81 ~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~ 160 (268)
T 1qop_A 81 CFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADD 160 (268)
T ss_dssp HHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCH
T ss_pred HHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCH
Confidence 99999999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+|++.+++.+.||+|++++.|+||.++..+++..++++++|+.+++||++||||+|+|++++++..|||||||||+|++.
T Consensus 161 ~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 161 DLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI 240 (268)
T ss_dssp HHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence 99999999999999999999999998888777889999999999999999999999999999888999999999999999
Q ss_pred hhhc-CCchhHHHHHHHHHHHHHhhC
Q 021527 286 LGEA-QSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 286 ~~~~-~~~~~~~~~~~~~~~~l~~~~ 310 (311)
+++. .+++...+++++|+++++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (268)
T 1qop_A 241 IEKNLASPKQMLAELRSFVSAMKAAS 266 (268)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HhhcccCchHHHHHHHHHHHHHHHHh
Confidence 8653 233556789999999999876
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-54 Score=400.23 Aligned_cols=260 Identities=58% Similarity=1.019 Sum_probs=242.8
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|+||++.|+++++++|++|++|+++|||+.+.+.+.++.|+++|+|+||+|+||+||++|||+||+++.+|+++|.+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~ 81 (262)
T 1rd5_A 2 SRPVSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDA 81 (262)
T ss_dssp CCCHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHH
T ss_pred ccHHHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
.++.++++|+.+++|+++|+|+|+++.+++++ +.++|+||++++|+|+++..++.+.++++|++.+++++|+++.+
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~~~~~~~~~~~~~----a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e 157 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLSYYKPIMFRSLAK----MKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPED 157 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEECCSHHHHSCCTHH----HHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHH
T ss_pred HHHHHHHHHhcCCCCEEEEecCcHHHHHHHHH----HHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHH
Confidence 99999999999999999999999999888865 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+++.+.+.+.||+|+++..|+||.++..++...++++++|+.+++||++||||+|++++.++.++|||||||||+|++.+
T Consensus 158 ~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~~ 237 (262)
T 1rd5_A 158 RMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQL 237 (262)
T ss_dssp HHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred HHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhHH
Confidence 99999898999999999999999987777778889999999999999999999999999999999999999999999998
Q ss_pred hhcCCchhHHHHHHHHHHHHHhhC
Q 021527 287 GEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
++..++.+..+.+++|+++|+.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~ 261 (262)
T 1rd5_A 238 GEAASPKQGLRRLEEYARGMKNAL 261 (262)
T ss_dssp HSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhccChhHHHHHHHHHHHHHHHhh
Confidence 643334446789999999998764
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=342.58 Aligned_cols=244 Identities=43% Similarity=0.708 Sum_probs=219.7
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
+||+.|++|+++|||+++.+.+.++.++++ +|+||+|+|||||.+||+++++++.+||++|.|+...++.++++|+.++
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~ 80 (248)
T 1geq_A 2 FKDGSLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSS 80 (248)
T ss_dssp CCTTEEEEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCC
Confidence 468899999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+|+++|+|+|+++++|.++|++.+.++|+|+++++|++.++..++.+.++++|++.++.++|.|+.++++.+....++|+
T Consensus 81 ~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i 160 (248)
T 1geq_A 81 TPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFV 160 (248)
T ss_dssp CCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEE
T ss_pred CCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHH
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~ 299 (311)
|+++..|+||++.+.++...++++++++.+++||++||||+++|++.++++.|||||||||++++..+++ . +.+
T Consensus 161 ~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~~~~~-----~-~~~ 234 (248)
T 1geq_A 161 YLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEK-----G-REA 234 (248)
T ss_dssp EEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHH-----G-GGC
T ss_pred EEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhhHhhC-----h-HHH
Confidence 9998888898876666666789999999889999999999999999999999999999999999987431 1 567
Q ss_pred HHHHHHHHhhC
Q 021527 300 EKFAKSLKSAL 310 (311)
Q Consensus 300 ~~~~~~l~~~~ 310 (311)
++|++.+++++
T Consensus 235 ~~~~~~~~~~~ 245 (248)
T 1geq_A 235 TEFLKKKVEEL 245 (248)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 78888877654
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=274.04 Aligned_cols=177 Identities=20% Similarity=0.249 Sum_probs=158.0
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
-|+++|||+.+.+.+.++.|.++|+|+||+|+ | .|++.++++++++++|+ .++|+++|+
T Consensus 10 ~~it~gDP~~~~t~~~~~~l~~~GaD~IelG~--S------------------~g~t~~~~~~~v~~ir~-~~~Pivl~~ 68 (234)
T 2f6u_A 10 RHITKLDPDRTNTDEIIKAVADSGTDAVMISG--T------------------QNVTYEKARTLIEKVSQ-YGLPIVVEP 68 (234)
T ss_dssp CEEEEECTTSCCCHHHHHHHHTTTCSEEEECC--C------------------TTCCHHHHHHHHHHHTT-SCCCEEECC
T ss_pred eEEEeeCCCccccHHHHHHHHHcCCCEEEECC--C------------------CCCCHHHHHHHHHHhcC-CCCCEEEec
Confidence 38999999999999999999999999999996 1 68999999999999998 899999999
Q ss_pred cC-cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHH-----HHH-------HHcC-----CCeEE----EeCCCC-
Q 021527 147 YY-NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQ-----KEA-------MKNK-----IELVL----FTTPTT- 203 (311)
Q Consensus 147 Y~-n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~-----~~~-------~~~g-----i~~I~----lisp~t- 203 (311)
|+ |++ ++|+||+++||||+||..+|. +.+ +++| ++.|+ +++|++
T Consensus 69 y~~n~i-------------~~gvDg~iipdLp~ee~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~ 135 (234)
T 2f6u_A 69 SDPSNV-------------VYDVDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSA 135 (234)
T ss_dssp SSCCCC-------------CCCSSEEEEEEETTBSBGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSH
T ss_pred CCcchh-------------hcCCCEEEEcccCCCCCHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCc
Confidence 99 766 679999999999999977777 555 7899 99999 788877
Q ss_pred -----------hHHHHHHHHHhCC-----ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHH
Q 021527 204 -----------PTDRMKAIVEASE-----GFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQ 266 (311)
Q Consensus 204 -----------~~eri~~i~~~a~-----gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~ 266 (311)
+++|++.+++.+. +|+|+++ .|+++ ..++++++++.+ ++|+++||||+++|+++
T Consensus 136 ~~rl~~g~~~~~~e~~~~~a~~g~~~l~~~~Vyl~~-~G~~~--------~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~ 206 (234)
T 2f6u_A 136 VARVTKALCNIDKELAASYALVGEKLFNLPIIYIEY-SGTYG--------NPELVAEVKKVLDKARLFYGGGIDSREKAR 206 (234)
T ss_dssp HHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEEEC-TTSCC--------CHHHHHHHHHHCSSSEEEEESCCCSHHHHH
T ss_pred eEEeecCCCCCCHHHHHHHHHhhhhhcCCCEEEEeC-CCCcc--------hHHHHHHHHHhCCCCCEEEEecCCCHHHHH
Confidence 5688999999887 9999997 66432 357899999999 99999999999999999
Q ss_pred HHHHcCCcEEEEhhHhhchhh
Q 021527 267 QVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 267 ~v~~~GADGvIVGSaiv~~~~ 287 (311)
++++ |||+|||||++++..+
T Consensus 207 ~~~~-gAd~VIVGSa~v~~~~ 226 (234)
T 2f6u_A 207 EMLR-YADTIIVGNVIYEKGI 226 (234)
T ss_dssp HHHH-HSSEEEECHHHHHHCH
T ss_pred HHHh-CCCEEEEChHHHhCHH
Confidence 9999 8999999999999664
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=272.50 Aligned_cols=176 Identities=26% Similarity=0.317 Sum_probs=155.4
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
-|+++|||+++.+.+.++.|.++|+|+||+|+ ..|++.++++++++++|+ .++|+++|+
T Consensus 10 ~~i~~gDP~~~~t~~~~~~l~~~GaD~ielG~--------------------S~Gvt~~~~~~~v~~ir~-~~~Pivlm~ 68 (240)
T 1viz_A 10 KHVFKLDPNKDLPDEQLEILCESGTDAVIIGG--------------------SDGVTEDNVLRMMSKVRR-FLVPCVLEV 68 (240)
T ss_dssp CEEEEECTTSCCCHHHHHHHHTSCCSEEEECC------------------------CHHHHHHHHHHHTT-SSSCEEEEC
T ss_pred eEEEeeCCCccccHHHHHHHHHcCCCEEEECC--------------------CCCCCHHHHHHHHHHhhC-cCCCEEEec
Confidence 38999999999999999999999999999995 168999999999999998 899999999
Q ss_pred cC-cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHH-----HHHHHHcC-----CCeEE----EeCCCCh-------
Q 021527 147 YY-NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL-----QKEAMKNK-----IELVL----FTTPTTP------- 204 (311)
Q Consensus 147 Y~-n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~-----~~~~~~~g-----i~~I~----lisp~t~------- 204 (311)
|+ |++ ++|+||+|+||||+||..++ ...++++| ++.|+ +++|++.
T Consensus 69 y~~n~i-------------~~G~dg~iiPdLp~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~ 135 (240)
T 1viz_A 69 SAIEAI-------------VPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEA 135 (240)
T ss_dssp SCGGGC-------------CSCCSEEEEEEETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTB
T ss_pred Cccccc-------------cCCCCEEEEcccCcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeecc
Confidence 99 666 57999999999999988777 68899999 99999 8899876
Q ss_pred -----HHHHHHHHHhCC----ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCc
Q 021527 205 -----TDRMKAIVEASE----GFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGAD 274 (311)
Q Consensus 205 -----~eri~~i~~~a~----gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GAD 274 (311)
++|++.+++.+. +|+|+++ .|+++ ..++++++++.+ ++|+++||||+++|+++++++ |||
T Consensus 136 d~~~~~~~~~~~a~~g~~~~~~~VYl~s-~G~~~--------~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd 205 (240)
T 1viz_A 136 DADLNMDDIVAYARVSELLQLPIFYLEY-SGVLG--------DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HAD 205 (240)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCSEEEEEC-TTSCC--------CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCS
T ss_pred CCCCCHHHHHHHHHhCcccCCCEEEEeC-CCccC--------hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCC
Confidence 578888887775 9999998 66532 357899999999 999999999999999999998 999
Q ss_pred EEEEhhHhhchh
Q 021527 275 GVIVGSAMVKLL 286 (311)
Q Consensus 275 GvIVGSaiv~~~ 286 (311)
+|||||++++..
T Consensus 206 ~VIVGSa~v~~~ 217 (240)
T 1viz_A 206 VIVVGNAVYEDF 217 (240)
T ss_dssp EEEECTHHHHCH
T ss_pred EEEEChHHHhCH
Confidence 999999999865
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=236.25 Aligned_cols=174 Identities=17% Similarity=0.250 Sum_probs=151.7
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
|++.+|||.+.+.+.++.+.++|+|.||+|. ..|++.+++++.++++|+ .++|+++|.|
T Consensus 14 h~~~~DPdk~~~~~~l~~~~~~GtDaI~vGg--------------------s~gvt~~~~~~~v~~ik~-~~~Piil~p~ 72 (235)
T 3w01_A 14 HIFKLDPAKHISDDDLDAICMSQTDAIMIGG--------------------TDDVTEDNVIHLMSKIRR-YPLPLVLEIS 72 (235)
T ss_dssp EEEEECTTSCCCHHHHHHHHTSSCSEEEECC--------------------SSCCCHHHHHHHHHHHTT-SCSCEEEECC
T ss_pred EEEeECCCCcCCHHHHHHHHHcCCCEEEECC--------------------cCCcCHHHHHHHHHHhcC-cCCCEEEecC
Confidence 8899999999888899999999999999993 357899999999999998 9999999998
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHH-----HHHHHHcCC-----CeEE----EeCCCChHHH------
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL-----QKEAMKNKI-----ELVL----FTTPTTPTDR------ 207 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~-----~~~~~~~gi-----~~I~----lisp~t~~er------ 207 (311)
|+ +.| ..|+|++++|||+.++..+| .+.++++|+ +.|+ ++.|+++..|
T Consensus 73 -~~------~~~-----~~gaD~il~pslln~~~~~~i~g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~~a~~ 140 (235)
T 3w01_A 73 -NI------ESV-----MPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANT 140 (235)
T ss_dssp -CS------TTC-----CTTCSEEEEEEETTBSSGGGTTHHHHHHHHHHGGGCCGGGEEEEEEEECCSSSHHHHHTTBCC
T ss_pred -CH------HHh-----hcCCCEEEEccccCCCCcchhhhHHHHHHHHcCCCCcccceeeeeEEEECCCCChhhcccCCc
Confidence 53 223 23999999999999875555 467899999 9998 7899998885
Q ss_pred ---HHHHHHhCC--------ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcE
Q 021527 208 ---MKAIVEASE--------GFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADG 275 (311)
Q Consensus 208 ---i~~i~~~a~--------gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADG 275 (311)
++.++..+. +|+|+++ .|+||. .++++++|+.+ ++|+++||||+++|+++++.+ ||||
T Consensus 141 ~~~~e~iaa~A~~a~~~~g~~~vY~e~-sG~~g~--------~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~ 210 (235)
T 3w01_A 141 DLTTEDLEAYAQMVNHMYRLPVMYIEY-SGIYGD--------VSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADT 210 (235)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEEC-TTSCCC--------HHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSE
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEec-CCCcCC--------HHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCE
Confidence 777777644 9999998 888762 47899999998 899999999999999999998 8999
Q ss_pred EEEhhHhhc
Q 021527 276 VIVGSAMVK 284 (311)
Q Consensus 276 vIVGSaiv~ 284 (311)
|||||++++
T Consensus 211 VVVGSai~~ 219 (235)
T 3w01_A 211 IIVGDIIYK 219 (235)
T ss_dssp EEECTHHHH
T ss_pred EEECCceec
Confidence 999999998
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=214.55 Aligned_cols=188 Identities=23% Similarity=0.281 Sum_probs=155.5
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
|++.+|||.+.+.+.++++.++|+|+||+|. ..|++.+++++.++++|+ +++|+++|.|
T Consensus 9 h~~~iDPdk~~~~~~~~~~~~~GtD~i~vGG--------------------s~gvt~~~~~~~v~~ik~-~~~Pvvlfp~ 67 (228)
T 3vzx_A 9 HVFKLDPNKDLPDEQLEILCESGTDAVIIGG--------------------SDGVTEDNVLRMMSKVRR-FLVPCVLEVS 67 (228)
T ss_dssp EEEEECTTSCCCTTHHHHHHTSSCSEEEECC--------------------CSCCCHHHHHHHHHHHTT-SSSCEEEECS
T ss_pred EEEeECCCCCCCHHHHHHHHHcCCCEEEECC--------------------cCCCCHHHHHHHHHHhhc-cCCCEEEeCC
Confidence 8899999998777889999999999999993 246889999999999998 9999999998
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHH-----HHHHHcCC-----CeEE----EeCCCChH--------
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQ-----KEAMKNKI-----ELVL----FTTPTTPT-------- 205 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~-----~~~~~~gi-----~~I~----lisp~t~~-------- 205 (311)
...- |. .|+|++++|+|+.++..+|. +.++++|+ +.++ ++.|+++.
T Consensus 68 ~~~~-------v~-----~gaD~~l~pslln~~~~~~i~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~ 135 (228)
T 3vzx_A 68 AIEA-------IV-----PGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADA 135 (228)
T ss_dssp CGGG-------CC-----SCCSEEEEEEETTBSSGGGTTHHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCC
T ss_pred CHHH-------cc-----ccCCEEEEeeecCCCCcchhhhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccC
Confidence 6422 21 59999999999987755554 77899997 8888 68888887
Q ss_pred ----HHHHHHHHhC----CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 206 ----DRMKAIVEAS----EGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 206 ----eri~~i~~~a----~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
+++..++..+ .+|+|+.+ .|.+| + .++++++|+.+ ++|+++||||+++|+++++. .|||+|
T Consensus 136 ~~~~e~~~~~a~~a~~~g~~~VYld~-sG~~~-----~---~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~V 205 (228)
T 3vzx_A 136 DLNMDDIVAYARVSELLQLPIFYLEY-SGVLG-----D---IEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVI 205 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEC-TTSCC-----C---HHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecC-CCCcC-----C---HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEE
Confidence 7787777766 48999987 56544 1 47899999998 79999999999999999999 699999
Q ss_pred EEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 277 IVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 277 IVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
||||++++-. +.++++++.++.
T Consensus 206 VVGSa~v~~p----------~~~~~~v~a~~~ 227 (228)
T 3vzx_A 206 VVGNAVYEDF----------DRALKTVAAVKG 227 (228)
T ss_dssp EECTHHHHCH----------HHHHHHHHHHHC
T ss_pred EEChHHhcCH----------HHHHHHHHHHhc
Confidence 9999999832 345666666553
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-27 Score=214.24 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=161.7
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
.++|||+++| +..+.+.++.+.++|+|++|+++ +||++++.. .. .++.++++|+.++.|+.
T Consensus 6 ~i~psila~D--~~~l~~~i~~~~~~Gad~ihldi------~DG~fvp~~-----~~------g~~~v~~lr~~~~~~~~ 66 (230)
T 1tqj_A 6 VVAPSILSAD--FSRLGEEIKAVDEAGADWIHVDV------MDGRFVPNI-----TI------GPLIVDAIRPLTKKTLD 66 (230)
T ss_dssp EEEEBGGGSC--GGGHHHHHHHHHHTTCSEEEEEE------EBSSSSSCB-----CB------CHHHHHHHGGGCCSEEE
T ss_pred EEEEEeeecC--HhHHHHHHHHHHHcCCCEEEEEE------EecCCCcch-----hh------hHHHHHHHHhhcCCcEE
Confidence 3789999999 68899999999999999999994 788877631 12 24688999988888876
Q ss_pred --EEecCcchhccCHHHHHHHHHHcCCcEEEecCC--ChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 144 --LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV--PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 144 --lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl--p~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+|+ .|| ++|++.+.++|+||+++++. +.++..++.+.++++|+.....++|+|+.++++.+....+ |+
T Consensus 67 vhlmv-~dp------~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D-~v 138 (230)
T 1tqj_A 67 VHLMI-VEP------EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCD-LI 138 (230)
T ss_dssp EEEES-SSG------GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCS-EE
T ss_pred EEEEc-cCH------HHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCC-EE
Confidence 887 354 67899999999999999998 8778888999999999999999999999999887766555 99
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|++++.+++|.+ ...+...+.++++|+.+ ++||.++|||+. +++.++.++|||++||||++++
T Consensus 139 ~~msv~pg~ggq-~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~ 206 (230)
T 1tqj_A 139 LIMSVNPGFGGQ-SFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN 206 (230)
T ss_dssp EEESSCC----C-CCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred EEEEeccccCCc-cCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 999999988864 45666778899999877 799999999986 9999999999999999999997
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=210.48 Aligned_cols=198 Identities=17% Similarity=0.201 Sum_probs=149.1
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
++|||+.+.+. +.|+++|+|+||+|+||+||. |.+++++++++++++ +|++. |
T Consensus 19 t~g~p~~~~~~---~~l~~~Gad~ielg~pr~~~~----------------g~~~~~~~~~l~~~~----~~~~p----n 71 (264)
T 1xm3_A 19 TGKYPSFDIQK---EAVAVSESDILTFAVRRMNIF----------------EASQPNFLEQLDLSK----YTLLP----N 71 (264)
T ss_dssp CSCSSCHHHHH---HHHHHHTCSEEEEETTSSTTC-----------------------CTTCCGGG----SEEEE----E
T ss_pred ecCCCCHHHHH---HHHHHcCCeEEEEcccccccC----------------CCCHHHHHHHHHhcC----CeEcC----C
Confidence 89999999885 588889999999999999875 456667777765443 44432 5
Q ss_pred chhccCHH---HHHHHHHHcCCcEE----EecCCC--hhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVD---NFMSTVRDIGIRGL----VVPDVP--LEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~---~fi~~~~~aGadGv----iipDlp--~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+...++.+ +|++.+.++|.+++ +++|.| +++..++.+.++++ |+..++++.|+ .++++++.+...+
T Consensus 72 ~~~~~~~~~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~--~~~a~~~~~~gad 149 (264)
T 1xm3_A 72 TAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDD--VVLARKLEELGVH 149 (264)
T ss_dssp CTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSC--HHHHHHHHHHTCS
T ss_pred ccccCCHHHHHHHHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCC--HHHHHHHHHhCCC
Confidence 55555665 48899999988888 678887 57888899999998 99988888776 3677777777777
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 297 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~ 297 (311)
|+ ++..++||++.+... .+.++++++.+++||+++|||++++|+.++.++|||||+|||+|++.. ++ .+
T Consensus 150 ~v--~~~~~~~Gt~~~~~~--~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a~----dp---~~ 218 (264)
T 1xm3_A 150 AI--MPGASPIGSGQGILN--PLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGAD----DP---VK 218 (264)
T ss_dssp CB--EECSSSTTCCCCCSC--HHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSS----SH---HH
T ss_pred EE--EECCcccCCCCCCCC--HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCC----CH---HH
Confidence 77 666678887655433 467889988889999999999999999999999999999999999843 22 33
Q ss_pred HHHHHHHHHH
Q 021527 298 ELEKFAKSLK 307 (311)
Q Consensus 298 ~~~~~~~~l~ 307 (311)
.+++|.+.++
T Consensus 219 ~~~~l~~~v~ 228 (264)
T 1xm3_A 219 MARAMKLAVE 228 (264)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=201.41 Aligned_cols=210 Identities=16% Similarity=0.272 Sum_probs=167.3
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
+..++|||+++| +..+.+.++.+.++|+|++|++ ++||++++.. . + .++.++++|+.++.|
T Consensus 6 ~~~i~psi~a~d--~~~l~~~i~~~~~~Gad~i~l~------i~Dg~fv~~~-----~--~----~~~~~~~lr~~~~~~ 66 (228)
T 1h1y_A 6 AAKIAPSMLSSD--FANLAAEADRMVRLGADWLHMD------IMDGHFVPNL-----T--I----GAPVIQSLRKHTKAY 66 (228)
T ss_dssp CCEEEEBGGGSC--GGGHHHHHHHHHHTTCSEEEEE------EEBSSSSSCB-----C--B----CHHHHHHHHTTCCSE
T ss_pred CCeEEEEeeeCC--HHHHHHHHHHHHHcCCCEEEEE------EecCCcCcch-----h--h----CHHHHHHHHhhcCCc
Confidence 456899999999 6888999999999999999998 4677665531 0 1 146888888777667
Q ss_pred EE--EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhH-HHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh--CC
Q 021527 142 IA--LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET-ESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA--SE 216 (311)
Q Consensus 142 ii--lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~-~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~--a~ 216 (311)
+. +|++ || ++|++.+.++|+||+++++.+.++. .++.+.++++|+..++.+.|+|+.++++.+... ..
T Consensus 67 ~~v~lmv~-d~------~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~ 139 (228)
T 1h1y_A 67 LDCHLMVT-NP------SDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPV 139 (228)
T ss_dssp EEEEEESS-CG------GGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCC
T ss_pred EEEEEEec-CH------HHHHHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCC
Confidence 55 7773 43 5689999999999999998877777 788888999999989889999998888887664 67
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhH
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG 295 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~ 295 (311)
+|+|+++..+++|. +..++...+.++++|+.+ ++|++++|||+. +++.++.++|||++||||++++. .++.+.
T Consensus 140 d~vl~~sv~pg~~g-~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~~~aGaD~vvvGsai~~~----~d~~~~ 213 (228)
T 1h1y_A 140 ELVLVMTVEPGFGG-QKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASAGANCIVAGSSIFGA----AEPGEV 213 (228)
T ss_dssp SEEEEESSCTTCSS-CCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHHTCCEEEESHHHHTS----SCHHHH
T ss_pred CEEEEEeecCCCCc-ccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCC----CCHHHH
Confidence 89999998865554 356667778899999988 899999999985 99999999999999999999973 234444
Q ss_pred HHHHHHHH
Q 021527 296 LKELEKFA 303 (311)
Q Consensus 296 ~~~~~~~~ 303 (311)
.+++++.+
T Consensus 214 ~~~l~~~~ 221 (228)
T 1h1y_A 214 ISALRKSV 221 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554433
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=192.97 Aligned_cols=185 Identities=21% Similarity=0.220 Sum_probs=151.0
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEec
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTY 147 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y 147 (311)
+.+.+|++++..+.++.+. .|+|+||+|.||+ +..| ++.++++|+. .++|+ |
T Consensus 5 ~a~D~~~~~~~~~~~~~~~-~~~diie~G~p~~----------------~~~g------~~~i~~ir~~~~~~~i----~ 57 (211)
T 3f4w_A 5 LALDELTLPEAMVFMDKVV-DDVDIIEVGTPFL----------------IREG------VNAIKAIKEKYPHKEV----L 57 (211)
T ss_dssp EEECSCCHHHHHHHHHHHG-GGCSEEEECHHHH----------------HHHT------THHHHHHHHHCTTSEE----E
T ss_pred EEeCCCCHHHHHHHHHHhh-cCccEEEeCcHHH----------------Hhcc------HHHHHHHHHhCCCCEE----E
Confidence 3556799999999999996 7999999998775 1123 4688888887 58897 4
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEE-EeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVL-FTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~-lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
+|..+..+.+.|++.+.++|+|++++++.+.++ ..++.+.++++|++.+. +.+|.++.++++.+.+...+++|+. .
T Consensus 58 ~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~--~ 135 (211)
T 3f4w_A 58 ADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVH--T 135 (211)
T ss_dssp EEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEE--C
T ss_pred EEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEc--C
Confidence 477777788889999999999999999998744 57899999999998765 4678888888888888777888774 4
Q ss_pred CccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 226 GVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
|.+|.+.. +...+.++++|+.. ++|++++|||+ ++++.++.++|||+++|||++++.
T Consensus 136 g~~g~~~~--~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~ 193 (211)
T 3f4w_A 136 GTDQQAAG--RKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHA 193 (211)
T ss_dssp CHHHHHTT--CCSHHHHHHHHHHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTC
T ss_pred CCcccccC--CCCHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCC
Confidence 66665432 22347789999875 89999999997 899999999999999999999983
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-25 Score=199.74 Aligned_cols=193 Identities=18% Similarity=0.238 Sum_probs=157.9
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
.+++|++++|| ..+.+.++.+.++|+|++|+++ +||++++.. ...++.++++++.++.|+.
T Consensus 12 ~i~p~i~a~d~--~~~~~~i~~~~~~G~d~i~l~~------~dg~f~~~~-----------~~~~~~i~~l~~~~~~~~~ 72 (230)
T 1rpx_A 12 IVSPSILSANF--SKLGEQVKAIEQAGCDWIHVDV------MDGRFVPNI-----------TIGPLVVDSLRPITDLPLD 72 (230)
T ss_dssp EEEEBGGGSCG--GGHHHHHHHHHHTTCCCEEEEE------EBSSSSSCB-----------CCCHHHHHHHGGGCCSCEE
T ss_pred EEEEEeecCCH--HHHHHHHHHHHHCCCCEEEEee------ccCCccccc-----------ccCHHHHHHHHhccCCcEE
Confidence 48999999997 5889999999999999999984 677665521 1125688889888788999
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCC--ChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV--PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl--p~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
++.|.|+ .++|++.+.++|+|++++++. +.++..++.+.++++|+.....+.|+|+.++++.+... ..++|+
T Consensus 73 v~l~vnd-----~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~~-~d~vl~ 146 (230)
T 1rpx_A 73 VHLMIVE-----PDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDA-VDLVLI 146 (230)
T ss_dssp EEEESSS-----HHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTT-CSEEEE
T ss_pred EEEEecC-----HHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhh-CCEEEE
Confidence 9999886 468999999999999999998 77777788889999999888888888888887665433 348888
Q ss_pred EecC-CccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSI-GVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~-G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++.. |.+|. ...+...+.++++|+.+ ++|++++|||+ ++++.++.++|||||+|||++++
T Consensus 147 ~~~~pg~~g~--~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~ 212 (230)
T 1rpx_A 147 MSVNPGFGGQ--SFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 212 (230)
T ss_dssp ESSCTTCSSC--CCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred EEEcCCCCCc--cccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhC
Confidence 8875 45554 33455567788888876 79999999998 79999999999999999999997
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=176.89 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=152.0
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT 146 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~ 146 (311)
.+-+.+|++++..+.++.+ +.|+|++|+|+|+. +..| ++.++++|+. .+.|++++.
T Consensus 10 ilalD~~~~~~~~~~~~~~-~~~vd~ie~g~~~~----------------~~~G------~~~i~~lr~~~~~~~i~ld~ 66 (218)
T 3jr2_A 10 QIALDQTNLTDAVAVASNV-ASYVDVIEVGTILA----------------FAEG------MKAVSTLRHNHPNHILVCDM 66 (218)
T ss_dssp EEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHH----------------HHHT------THHHHHHHHHCTTSEEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHh-cCCceEEEeCcHHH----------------HhcC------HHHHHHHHHhCCCCcEEEEE
Confidence 3567899999999999997 67999999998772 2223 5688899887 578998887
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEE-EeCCCChHHHHHHHHHhCCceEEEEec
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVL-FTTPTTPTDRMKAIVEASEGFVYLVSS 224 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~-lisp~t~~eri~~i~~~a~gfiY~vs~ 224 (311)
+... ..+.|++.+.++|+|++++++.+.++ ..++.+.++++|++... ++.|.|+ ++++.+.+. |+.|++..
T Consensus 67 ~l~d----~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~-~~~~~~~~~--g~d~v~~~ 139 (218)
T 3jr2_A 67 KTTD----GGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTM-QDAKAWVDL--GITQAIYH 139 (218)
T ss_dssp EECS----CHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCH-HHHHHHHHT--TCCEEEEE
T ss_pred eecc----cHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecCCH-HHHHHHHHc--Cccceeee
Confidence 6542 34678999999999999999998765 57889999999998776 7777776 676666543 89998776
Q ss_pred CCccCCCCC--CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHH
Q 021527 225 IGVTGARAS--ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKF 302 (311)
Q Consensus 225 ~G~TG~~~~--~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~ 302 (311)
.++++...+ ..+...+.+++++. .++|++++|||+ ++++.++.++|||++||||+|++.- +..+.+ ++
T Consensus 140 ~~~~~~~~g~~~~~~~l~~i~~~~~-~~~pi~v~GGI~-~~~~~~~~~aGAd~vvvGsaI~~a~-------dp~~a~-~l 209 (218)
T 3jr2_A 140 RSRDAELAGIGWTTDDLDKMRQLSA-LGIELSITGGIV-PEDIYLFEGIKTKTFIAGRALAGAE-------GQQTAA-AL 209 (218)
T ss_dssp CCHHHHHHTCCSCHHHHHHHHHHHH-TTCEEEEESSCC-GGGGGGGTTSCEEEEEESGGGSHHH-------HHHHHH-HH
T ss_pred eccccccCCCcCCHHHHHHHHHHhC-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEchhhcCCC-------CHHHHH-HH
Confidence 665533222 23333344444443 479999999996 8999999999999999999999742 123345 66
Q ss_pred HHHHHhhCC
Q 021527 303 AKSLKSALP 311 (311)
Q Consensus 303 ~~~l~~~~~ 311 (311)
.+.+++.++
T Consensus 210 ~~~~~~~~~ 218 (218)
T 3jr2_A 210 REQIDRFWP 218 (218)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHhhCC
Confidence 666666553
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=168.76 Aligned_cols=195 Identities=11% Similarity=0.180 Sum_probs=148.1
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
.+.++++++|+ ..+.+.++.+.++|+|++|+. .+||+..+ ++...++.++++++.++.|+.
T Consensus 5 ~~~~~i~a~D~--~~~~~~~~~~~~~G~~~i~~~------~~dg~~~~-----------~~~~g~~~i~~i~~~~~~~~~ 65 (220)
T 2fli_A 5 KIAPSILAADY--ANFASELARIEETDAEYVHID------IMDGQFVP-----------NISFGADVVASMRKHSKLVFD 65 (220)
T ss_dssp EEEEBGGGSCG--GGHHHHHHHHHHTTCCEEEEE------EEBSSSSS-----------CBCBCHHHHHHHHTTCCSEEE
T ss_pred EEEEEEEeCCH--HHHHHHHHHHHHcCCCEEEEE------eecCCCCC-----------ccccCHHHHHHHHHhCCCCEE
Confidence 38899999998 788899999999999999998 33443211 101114688888887788998
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+..+.|+. +++++.+.++|+|++++++.+.++..++.+.++++|...+..+.|.++.++++.+... ..++|+++
T Consensus 66 v~l~v~d~-----~~~i~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~-~d~vl~~~ 139 (220)
T 2fli_A 66 CHLMVVDP-----ERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDL-VDQVLIMT 139 (220)
T ss_dssp EEEESSSG-----GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTT-CSEEEEES
T ss_pred EEEeecCH-----HHHHHHHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhh-CCEEEEEE
Confidence 88886643 4578899999999999987766677778888888998877778888887877665433 34777776
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..+.++.+ ...+...+.++++|+.+ +.|+++.|||+ ++++.++.++||||++|||++++.
T Consensus 140 ~~~g~~g~-~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~ 204 (220)
T 2fli_A 140 VNPGFGGQ-AFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKA 204 (220)
T ss_dssp SCTTCSSC-CCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTS
T ss_pred ECCCCccc-ccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 55333332 23444456677777654 78999999998 799999999999999999999984
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=159.96 Aligned_cols=181 Identities=19% Similarity=0.145 Sum_probs=131.2
Q ss_pred eCCC-CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEE--E
Q 021527 70 TAGD-PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIAL--F 145 (311)
Q Consensus 70 ~~G~-P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiil--m 145 (311)
++.| |++++..+.++.+.+ |+|++|+|.|++ +.+| ++.++++|+.+ +.|+++ |
T Consensus 5 ~a~d~~~~~~~~~~~~~~~~-~v~~iev~~~~~--~~~g--------------------~~~i~~l~~~~~~~~i~~~l~ 61 (207)
T 3ajx_A 5 VAIDLLSTEAALELAGKVAE-YVDIIELGTPLI--KAEG--------------------LSVITAVKKAHPDKIVFADMK 61 (207)
T ss_dssp EEECCSCHHHHHHHHHHHGG-GCSEEEECHHHH--HHHC--------------------THHHHHHHHHSTTSEEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhhc-cCCEEEECcHHH--HhhC--------------------HHHHHHHHHhCCCCeEEEEEE
Confidence 4444 999999999999988 999999997763 2233 34677787776 788775 6
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCe-EEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIEL-VLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~-I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
.| |. .+.|++.+.++|+|++++++.+. +...++++.++++|+.. +.+.+++++.++++.+.+. |..|+..
T Consensus 62 ~~-di-----~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~--g~d~v~~ 133 (207)
T 3ajx_A 62 TM-DA-----GELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRAL--GAKFVEM 133 (207)
T ss_dssp EC-SC-----HHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHT--TCSEEEE
T ss_pred ec-Cc-----cHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHh--CCCEEEE
Confidence 54 51 36689999999999999987765 56777888999989875 3344666777777666443 4444413
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..++++...+.+..- +.++++++. +.|+++.+||+ ++++.++.+.|||+++|||++++
T Consensus 134 ~~~~~~~~~g~~~~~-~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI~~ 191 (207)
T 3ajx_A 134 HAGLDEQAKPGFDLN-GLLAAGEKA-RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGAIYG 191 (207)
T ss_dssp ECCHHHHTSTTCCTH-HHHHHHHHH-TSCEEEESSCC-GGGHHHHHHTTCSEEEESHHHHT
T ss_pred EecccccccCCCchH-HHHHHhhCC-CCCEEEECCcC-HHHHHHHHHcCCCEEEEeeeccC
Confidence 334443222222211 456655543 78999999998 89999999999999999999998
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-20 Score=167.29 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=154.2
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL 144 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil 144 (311)
+.|+|++.|+. .+.+.++.+.++|+|++|++ ++||.++.. +..| +..++.+|+.++.-+.+
T Consensus 16 i~psila~D~~--~l~~~i~~~~~~gad~lhvD------vmDG~fvpn-----~t~G------~~~v~~lr~~~~~DvhL 76 (237)
T 3cu2_A 16 LSVGILSANWL--QLNEEVTTLLENQINVLHFD------IADGQFSSL-----FTVG------AIGIKYFPTHCFKDVHL 76 (237)
T ss_dssp EEEEGGGSCGG--GHHHHHHHHHHTTCCEEEEE------EEBSSSSSC-----BCBC------THHHHTSCTTSEEEEEE
T ss_pred EEEeeeeCCcc--cHHHHHHHHHHcCCCEEEEE------EecCccccc-----hhhh------HHHHHHHhhhCCCCeEE
Confidence 88999999985 67778999999999999998 456754421 1122 35788888765447888
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHc---------CCCeEEEeCCCChHHHHHHHHHhC
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKN---------KIELVLFTTPTTPTDRMKAIVEAS 215 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~---------gi~~I~lisp~t~~eri~~i~~~a 215 (311)
|.+ | .++|++.+.++|+|++.++....+...+..+.++++ |......+.|.|+.++++.+.+..
T Consensus 77 Mv~-~------p~~~i~~~~~aGAd~itvH~ea~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l~~~ 149 (237)
T 3cu2_A 77 MVR-N------QLEVAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQI 149 (237)
T ss_dssp ECS-C------HHHHHHHHHHTTCSEEEEETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTTTTC
T ss_pred EEE-C------HHHHHHHHHHcCCCEEEEecCCcccHHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHhhcC
Confidence 865 4 478999999999999999877766777888999999 988888889999988887765543
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHH--cCCcEEEEhhHhhch
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAG--WGADGVIVGSAMVKL 285 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~--~GADGvIVGSaiv~~ 285 (311)
.+++++++...+|.+. ..+...+.++++|+.. ++||.|.|||+ ++++.++.+ +|||++|+||++++.
T Consensus 150 -D~vlvMsv~pgfggq~-f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 150 -DVIQLLTLDPRNGTKY-PSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp -SEEEEESEETTTTEEC-CHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred -ceeeeeeeccCcCCee-cChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence 4888888888788664 3455667888888875 58999999997 899999999 999999999999984
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-20 Score=166.22 Aligned_cols=182 Identities=16% Similarity=0.244 Sum_probs=143.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcchh
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNPIL 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~i~ 152 (311)
|+....+.++.+ ++|+|++|++ ++||.++.. .++ .+..++.+|+.++.| +.+|++ ||
T Consensus 11 D~~~l~~~i~~~-~~gad~lHvD------vmDG~fvpn---------~t~--G~~~v~~lr~~~~~~~dvhLmv~-dp-- 69 (231)
T 3ctl_A 11 DLLKFKEQIEFI-DSHADYFHID------IMDGHFVPN---------LTL--SPFFVSQVKKLATKPLDCHLMVT-RP-- 69 (231)
T ss_dssp CGGGHHHHHHHH-HTTCSCEEEE------EECSSSSSC---------CCB--CHHHHHHHHTTCCSCEEEEEESS-CG--
T ss_pred ChhhHHHHHHHH-HcCCCEEEEE------EEeCccCcc---------chh--cHHHHHHHHhccCCcEEEEEEec-CH--
Confidence 346778888999 9999999998 667765532 111 246888888876666 677775 43
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR 231 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~ 231 (311)
++|++.+.++|+|+++++--. .....++.+.++++|++....+.|.||.++++.+... -.+++++|+...+|.+
T Consensus 70 ----~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~-~D~VlvmsV~pGfggQ 144 (231)
T 3ctl_A 70 ----QDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHK-ADKITVMTVDPGFAGQ 144 (231)
T ss_dssp ----GGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGG-CSEEEEESSCTTCSSC
T ss_pred ----HHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhc-CCEEEEeeeccCcCCc
Confidence 568899999999999997222 2236788999999999988888999998888777654 3488888988878765
Q ss_pred CCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh-hHhhc
Q 021527 232 ASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVG-SAMVK 284 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVG-Saiv~ 284 (311)
. ..+...+.++++|+.. +++|.|+|||+ ++++.++.++|||++|+| |++++
T Consensus 145 ~-f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~ 201 (231)
T 3ctl_A 145 P-FIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFN 201 (231)
T ss_dssp C-CCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGG
T ss_pred c-ccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhC
Confidence 4 4455667888888864 68999999998 699999999999999999 99997
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=164.13 Aligned_cols=208 Identities=15% Similarity=0.225 Sum_probs=152.4
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~i 140 (311)
..+.|=|.+-|. ....+.++.++++|+|++++. +.||.++...+ .| .+.++++|+. .++
T Consensus 5 ~~i~psil~~D~--~~l~~~i~~l~~~g~d~~h~D------VmDg~Fvpn~~-----~G------~~~v~~ir~~~~~~~ 65 (228)
T 3ovp_A 5 CKIGPSILNSDL--ANLGAECLRMLDSGADYLHLD------VMDGHFVPNIT-----FG------HPVVESLRKQLGQDP 65 (228)
T ss_dssp CEEEEBCTTSCG--GGHHHHHHHHHHTTCSCEEEE------EEBSSSSSCBC-----BC------HHHHHHHHHHHCSSS
T ss_pred cEeeeeheeCCc--hhHHHHHHHHHHcCCCEEEEE------ecCCCcCcccc-----cC------HHHHHHHHHhhCCCC
Confidence 345555555443 667788899999999999997 66664432110 11 3477788776 577
Q ss_pred cEE--EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 141 PIA--LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 141 Pii--lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
|+- +|. .| +++|++.+.++|+|.+.++....++..++.+.++++|++....+.|.|+.++++.+... ..+
T Consensus 66 ~~dvhLmv-~~------p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~-~D~ 137 (228)
T 3ovp_A 66 FFDMHMMV-SK------PEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQ-IDM 137 (228)
T ss_dssp CEEEEEEC-SC------GGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGG-CSE
T ss_pred cEEEEEEe-CC------HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhcc-CCe
Confidence 754 553 23 35688899999999999985444467788999999999999999999999988777654 458
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 297 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~ 297 (311)
++++|+....|.+. ..+...+.++++|+.. +.|+.|+|||+ ++++.++.++|||++|+||++++. .++.+.++
T Consensus 138 Vl~msv~pGf~Gq~-f~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a----~dp~~~~~ 211 (228)
T 3ovp_A 138 ALVMTVEPGFGGQK-FMEDMMPKVHWLRTQFPSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRS----EDPRSVIN 211 (228)
T ss_dssp EEEESSCTTTCSCC-CCGGGHHHHHHHHHHCTTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTC----SCHHHHHH
T ss_pred EEEeeecCCCCCcc-cCHHHHHHHHHHHHhcCCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCC----CCHHHHHH
Confidence 88888754444443 4455567799999875 68999999997 799999999999999999999973 23444455
Q ss_pred HHHHHH
Q 021527 298 ELEKFA 303 (311)
Q Consensus 298 ~~~~~~ 303 (311)
++++.+
T Consensus 212 ~l~~~~ 217 (228)
T 3ovp_A 212 LLRNVC 217 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=165.84 Aligned_cols=193 Identities=18% Similarity=0.211 Sum_probs=145.5
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPi 142 (311)
.+.|=+.+-|. ....+.++.++++|+|++++. +.||.++..-+ .| .+.++.+|+.+ ++|+
T Consensus 29 ~i~pSilsaD~--~~L~~~i~~l~~~G~d~lHvD------VmDg~FVpnit-----~G------~~~v~~lr~~~p~~~l 89 (246)
T 3inp_A 29 QINPSILSADL--ARLGDDVKAVLAAGADNIHFD------VMDNHYVPNLT-----FG------PMVLKALRDYGITAGM 89 (246)
T ss_dssp EEEEBGGGSCG--GGHHHHHHHHHHTTCCCEEEE------EEBSSSSSCBC-----CC------HHHHHHHHHHTCCSCE
T ss_pred eeehhhhcCCh--hhHHHHHHHHHHcCCCEEEEE------ecCCCcCcchh-----cC------HHHHHHHHHhCCCCeE
Confidence 34455554433 567788899999999999997 66665432110 11 35777888776 7886
Q ss_pred EEE-ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 143 ALF-TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 143 ilm-~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
-+- -..| +++|++.+.++|+|.+.++....++..+..+.++++|++..+.+.|.|+.++++.+... ..+|++
T Consensus 90 dvHLmv~~------p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~-vD~Vlv 162 (246)
T 3inp_A 90 DVHLMVKP------VDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESN-IDRVLI 162 (246)
T ss_dssp EEEEECSS------CHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGG-CSEEEE
T ss_pred EEEEeeCC------HHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhc-CCEEEE
Confidence 542 2333 36799999999999999986555567888999999999999999999999998777653 458888
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+|+...+|.+. ..+...+.++++|+.. +.+|.|+|||+ ++++.++.++|||.+|+||++.+
T Consensus 163 MsV~PGfgGQ~-fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~ 228 (246)
T 3inp_A 163 MSVNPGFGGQK-FIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFN 228 (246)
T ss_dssp ECSCTTC--CC-CCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHT
T ss_pred eeecCCCCCcc-cchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhC
Confidence 88875555553 3345567788888753 58999999998 79999999999999999999997
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=159.40 Aligned_cols=193 Identities=17% Similarity=0.168 Sum_probs=138.4
Q ss_pred EEEEEeCCCCCh-hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 65 LIPYITAGDPDL-STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 65 li~yi~~G~P~~-~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
..+++.-|+-.. ....+.++.+.++|+|.|++ +|+.++| ...|.+ ++.++++++.+++|++
T Consensus 17 ~~v~~~~g~~~~~~~~~~~a~~~~~~Ga~~i~v----~d~~~~~----------~~~g~~----~~~i~~i~~~~~iPvi 78 (266)
T 2w6r_A 17 FMVFTHSGKKNTGILLRDWVVEVEKRGAGEILL----TSIDRDG----------TKSGYD----TEMIRFVRPLTTLPII 78 (266)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEE----EETTTSS----------CSSCCC----HHHHHHHGGGCCSCEE
T ss_pred EEEEEcCCeeccCCCHHHHHHHHHHCCCCEEEE----EecCccc----------CCCccc----HHHHHHHHHhcCCCEE
Confidence 344555554322 35789999999999999999 5776665 123444 4688899988999999
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChh---hHHHHHHHHHHcC--CCeE-EEeCC----------------
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE---ETESLQKEAMKNK--IELV-LFTTP---------------- 201 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~e---e~~~~~~~~~~~g--i~~I-~lisp---------------- 201 (311)
++++.|+.. -++.+.++|+|++++++.+++ +...+++.++.+| .+.+ ..+++
T Consensus 79 ~~ggi~~~~------~i~~~~~~Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~ 152 (266)
T 2w6r_A 79 ASGGAGKME------HFLEAFLAGADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKK 152 (266)
T ss_dssp EESCCCSTH------HHHHHHHHTCSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTE
T ss_pred EECCCCCHH------HHHHHHHcCCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCce
Confidence 999988543 256677899999999998874 5666777777777 4333 33333
Q ss_pred ---CChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 202 ---TTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 202 ---~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.++.++++.+.+...+++|+-+. ...|...+.+ .++++++++.+++||+++|||++++|+.++++.|||||+|
T Consensus 153 ~~~~~~~e~~~~~~~~G~~~i~~t~~-~~~g~~~g~~---~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~v 228 (266)
T 2w6r_A 153 NTGILLRDWVVEVEKRGAGEILLTSI-DRDGTKSGYD---TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALA 228 (266)
T ss_dssp EEEEEHHHHHHHHHHTTCSEEEEEET-TTTTTCSCCC---HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ecchhHHHHHHHHHHcCCCEEEEEee-cCCCCcCCCC---HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHc
Confidence 24567777777777888888432 2344433332 4789999999999999999999999999999999999999
Q ss_pred hhHhhch
Q 021527 279 GSAMVKL 285 (311)
Q Consensus 279 GSaiv~~ 285 (311)
||+|++.
T Consensus 229 gsal~~~ 235 (266)
T 2w6r_A 229 ASVFHFR 235 (266)
T ss_dssp STTTC--
T ss_pred cHHHHcC
Confidence 9999874
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-18 Score=152.59 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...+.++.++++|+|.|++ +|+.++|. .....++.++++++.+++|+++++++|+.
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v----~d~~~~~~--------------~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~----- 87 (252)
T 1ka9_F 31 GDPVEAARAYDEAGADELVF----LDISATHE--------------ERAILLDVVARVAERVFIPLTVGGGVRSL----- 87 (252)
T ss_dssp TCHHHHHHHHHHHTCSCEEE----EECCSSTT--------------CHHHHHHHHHHHHTTCCSCEEEESSCCSH-----
T ss_pred CCHHHHHHHHHHcCCCEEEE----EcCCcccc--------------CccccHHHHHHHHHhCCCCEEEECCcCCH-----
Confidence 45689999999999999877 56666542 12234678899999999999999998743
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCe-EEEeCC-------------------CChHHHHHHHHHhC-
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIEL-VLFTTP-------------------TTPTDRMKAIVEAS- 215 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~-I~lisp-------------------~t~~eri~~i~~~a- 215 (311)
++++.+.++|+|++++++.++++...+.+..+.++.+. +..++. .++.++++++.+..
T Consensus 88 -~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~ 166 (252)
T 1ka9_F 88 -EDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGA 166 (252)
T ss_dssp -HHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTC
T ss_pred -HHHHHHHHcCCCEEEEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCC
Confidence 57888999999999999887776655666666666432 233332 23467777776663
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..++|.. .+.+|...+.+ .++++++++.+++||+++|||++++|+.++.+.|||||+|||++++.
T Consensus 167 ~~i~~~~--~~~~g~~~g~~---~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~ 231 (252)
T 1ka9_F 167 GEILLTS--MDRDGTKEGYD---LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFG 231 (252)
T ss_dssp CEEEEEE--TTTTTTCSCCC---HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred CEEEEec--ccCCCCcCCCC---HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 4455542 23445444432 47899999988999999999999999999999999999999999973
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-17 Score=149.28 Aligned_cols=186 Identities=17% Similarity=0.235 Sum_probs=130.5
Q ss_pred CccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 021527 62 KVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV 135 (311)
Q Consensus 62 ~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir 135 (311)
+..+|.=+=--.|+. ..-.++++.++++||++|++- +|+ ...+ .-++.++++|
T Consensus 51 ~~~~IaE~K~asPs~g~i~~~~~p~~~A~~y~~~GA~~isvl---td~----~~f~--------------Gs~~~l~~ir 109 (272)
T 3qja_A 51 GIGVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVV---TEQ----RRFQ--------------GSLDDLDAVR 109 (272)
T ss_dssp SCEEEEEEC-------------CHHHHHHHHHHTTCSEEEEE---CCG----GGHH--------------HHHHHHHHHH
T ss_pred CCeEEEEEecCCCCCCccCCCCCHHHHHHHHHHcCCCEEEEe---cCh----hhcC--------------CCHHHHHHHH
Confidence 356676553333332 134789999999999999995 222 1211 2256888888
Q ss_pred ccCCCcEEEEecCcchhccCHHHH-HHHHHHcCCcEEEe--cCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 136 PQMSCPIALFTYYNPILKRGVDNF-MSTVRDIGIRGLVV--PDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 136 ~~~~iPiilm~Y~n~i~~~g~~~f-i~~~~~aGadGvii--pDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
+.+++|++...+ .++.| ++.+.++|+|+|++ .|++.++..++.+.++++|++.+.-+ ++. +.++...
T Consensus 110 ~~v~lPvl~kdf-------iid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev--~t~-ee~~~A~ 179 (272)
T 3qja_A 110 ASVSIPVLRKDF-------VVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEV--HTE-QEADRAL 179 (272)
T ss_dssp HHCSSCEEEESC-------CCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEE--SSH-HHHHHHH
T ss_pred HhCCCCEEECcc-------ccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEc--CCH-HHHHHHH
Confidence 889999997642 34566 88899999999998 58888889999999999999865443 454 4444444
Q ss_pred HhCCceEEEEecCCccCCC-CCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 213 EASEGFVYLVSSIGVTGAR-ASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~-~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+. |..|+ |+|+.. .....++ +.+.++++.+ ++|++++|||+|++|+.++.++|||||+|||+|++.
T Consensus 180 ~~--Gad~I----Gv~~r~l~~~~~dl-~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a 248 (272)
T 3qja_A 180 KA--GAKVI----GVNARDLMTLDVDR-DCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTS 248 (272)
T ss_dssp HH--TCSEE----EEESBCTTTCCBCT-THHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred HC--CCCEE----EECCCcccccccCH-HHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence 43 55454 333321 1122332 4567777765 799999999999999999999999999999999984
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=153.73 Aligned_cols=147 Identities=23% Similarity=0.344 Sum_probs=107.6
Q ss_pred HhhccCCCcEEE-EecC-c-chhccCHHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 133 EVVPQMSCPIAL-FTYY-N-PILKRGVDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 133 ~ir~~~~iPiil-m~Y~-n-~i~~~g~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
.+++.+++|++- ..++ + ..|. | +-+++.++++|+|++++++ +|++|..++.+.++++|+.+++.+.+++..
T Consensus 47 ~v~~~~~~~v~aqd~~~~~~ga~t-G-ei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~~e~ 124 (219)
T 2h6r_A 47 MIVENVNIPVYAQHIDNINPGSHT-G-HILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNINTS 124 (219)
T ss_dssp HHHHHCCSCBEESCCCSCCSBSCT-T-CCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSSHHH
T ss_pred HHHHHcCCcEEEEECChhhcCCcc-C-chHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCchHH
Confidence 444445788766 2221 1 1121 1 3458999999999999986 889999999999999999999999987765
Q ss_pred HHHHHHHHhCCceEEEEecC--CccCCC--CCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 206 DRMKAIVEASEGFVYLVSSI--GVTGAR--ASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~--G~TG~~--~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
+|+. +...+++|+.++. | ||.+ +..++.+.+.++.+|+.. ++|+++||||+++++++.+.+.|+||++|||
T Consensus 125 ~~~~---~~~~~~i~~~~~~~iG-tG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGs 200 (219)
T 2h6r_A 125 KAVA---ALSPDCIAVEPPELIG-TGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLAS 200 (219)
T ss_dssp HHHT---TTCCSEEEECCCC---------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESH
T ss_pred HHHH---hCCCCEEEEEeccccc-cCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcH
Confidence 5543 3466899998766 5 8842 222333556677777765 7999999999999999999999999999999
Q ss_pred Hhhch
Q 021527 281 AMVKL 285 (311)
Q Consensus 281 aiv~~ 285 (311)
++++.
T Consensus 201 Ai~~~ 205 (219)
T 2h6r_A 201 GVVKA 205 (219)
T ss_dssp HHHTC
T ss_pred HHhCc
Confidence 99984
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-18 Score=153.06 Aligned_cols=177 Identities=20% Similarity=0.224 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
...+.++.+.++|+|.|++ +|+.+++ -..+.+ ++.+++++ ..++|++++++.+..
T Consensus 31 ~~~~~a~~~~~~Gad~i~v----~d~~~~~----------~~~~~~----~~~i~~i~-~~~ipvi~~Ggi~~~------ 85 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHV----VDLSNAI----------ENSGEN----LPVLEKLS-EFAEHIQIGGGIRSL------ 85 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEE----EEHHHHH----------HCCCTT----HHHHHHGG-GGGGGEEEESSCCSH------
T ss_pred CHHHHHHHHHHcCCCEEEE----ecccccc----------cCCchh----HHHHHHHH-hcCCcEEEECCCCCH------
Confidence 4689999999999999997 4543322 123445 46888888 789999999987633
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-eCC---------------CChHHHHHHHHHhCCceEEE
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-TTP---------------TTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-isp---------------~t~~eri~~i~~~a~gfiY~ 221 (311)
++++.+.++|+|+|++++.++++...+.+. +++| +.+.+ +++ .++.++++++.+..-+++|+
T Consensus 86 ~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~-~~~g-~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~ 163 (241)
T 1qo2_A 86 DYAEKLRKLGYRRQIVSSKVLEDPSFLKSL-REID-VEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH 163 (241)
T ss_dssp HHHHHHHHTTCCEEEECHHHHHCTTHHHHH-HTTT-CEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEECchHhhChHHHHHH-HHcC-CcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCCCCEEEE
Confidence 467788889999999998777665556666 7777 55433 443 25667777776767788887
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-----C-CcEEEEhhHhhch
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-----G-ADGVIVGSAMVKL 285 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-----G-ADGvIVGSaiv~~ 285 (311)
-+. ..+|...+.+ .++++++++.+++||+++|||++++|+.++.+. | ||||+|||+|++.
T Consensus 164 t~~-~~~g~~~g~~---~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~ 229 (241)
T 1qo2_A 164 TEI-EKDGTLQEHD---FSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEG 229 (241)
T ss_dssp EET-THHHHTCCCC---HHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred Eee-cccccCCcCC---HHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcC
Confidence 543 2344333332 478899988889999999999999999999998 9 9999999999974
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=143.36 Aligned_cols=179 Identities=17% Similarity=0.186 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
...+.++.++++|+|.|++- |+..++. .....++.++++++.+++|+++.++.+..
T Consensus 31 d~~~~a~~~~~~Gad~i~v~----d~~~~~~--------------~~~~~~~~i~~i~~~~~ipvi~~ggI~~~------ 86 (253)
T 1thf_D 31 DPVELGKFYSEIGIDELVFL----DITASVE--------------KRKTMLELVEKVAEQIDIPFTVGGGIHDF------ 86 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEE----ESSCSSS--------------HHHHHHHHHHHHHTTCCSCEEEESSCCSH------
T ss_pred CHHHHHHHHHHcCCCEEEEE----CCchhhc--------------CCcccHHHHHHHHHhCCCCEEEeCCCCCH------
Confidence 45889999999999999984 4433331 11133578899998899999999887643
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCC-eEEEeCCC-------------------ChHHHHHHHHHhCCc
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIE-LVLFTTPT-------------------TPTDRMKAIVEASEG 217 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~-~I~lisp~-------------------t~~eri~~i~~~a~g 217 (311)
++++.+.++|+|+|+++...+++...+.+.++.+|.+ .+..+++. ++.++++.+.+..-+
T Consensus 87 ~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~ 166 (253)
T 1thf_D 87 ETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAG 166 (253)
T ss_dssp HHHHHHHHTTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEEChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCC
Confidence 4588888999999999877666655566677777753 33445552 456777776665434
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+.+. ...|...+.+ .+.++++++.+++||++++||++++|+.++.+.|||||+|||++++
T Consensus 167 ~i~~~~~-~~~g~~~g~~---~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~ 229 (253)
T 1thf_D 167 EILLTSI-DRDGTKSGYD---TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 (253)
T ss_dssp EEEEEET-TTTTSCSCCC---HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred EEEEEec-cCCCCCCCCC---HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHc
Confidence 3333322 2334333332 4678999888899999999999999999999999999999999997
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-15 Score=138.31 Aligned_cols=203 Identities=16% Similarity=0.186 Sum_probs=145.0
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNF 124 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~ 124 (311)
|+.+++..+.+..+|+-...+=-.+|.|-. ....++++++.++|+..|+++ +
T Consensus 4 ~~~~~~~~~~~~~~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~---------~----------------- 57 (229)
T 3q58_A 4 MSLLARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRIE---------G----------------- 57 (229)
T ss_dssp HHHHHHHHHHHHHHCCEEEECCCCTTSTTCSHHHHHHHHHHHHHTTCSEEEEE---------S-----------------
T ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCcEEEEC---------C-----------------
Confidence 555666666664455433333447777754 568999999999999999995 1
Q ss_pred HHHHHHHHHhhccCCCcEEEEe---cCc-chhccCHHHHHHHHHHcCCcEEEecC---CChhhHHHHHHHHHHcCCCeEE
Q 021527 125 NAILSMLKEVVPQMSCPIALFT---YYN-PILKRGVDNFMSTVRDIGIRGLVVPD---VPLEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~---Y~n-~i~~~g~~~fi~~~~~aGadGviipD---lp~ee~~~~~~~~~~~gi~~I~ 197 (311)
++.++++|+.+++|++... |.+ +++.....+.++.+.++|+|.+++-- +.++...++.+.++++|+..
T Consensus 58 ---~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v-- 132 (229)
T 3q58_A 58 ---IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLA-- 132 (229)
T ss_dssp ---HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEE--
T ss_pred ---HHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCCCEE--
Confidence 2478899999999987432 333 24555555678889999999886521 23467788889999887654
Q ss_pred EeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 198 FTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 198 lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
++..++.++. +... ..|+.|+. ...|.|+......++ .++++++++. ++||++.+||+|++|+.++.+.|||||
T Consensus 133 ~~~v~t~eea-~~a~--~~Gad~Ig~~~~g~t~~~~~~~~~-~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV 207 (229)
T 3q58_A 133 MADCSTVNEG-ISCH--QKGIEFIGTTLSGYTGPITPVEPD-LAMVTQLSHA-GCRVIAEGRYNTPALAANAIEHGAWAV 207 (229)
T ss_dssp EEECSSHHHH-HHHH--HTTCSEEECTTTTSSSSCCCSSCC-HHHHHHHHTT-TCCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred EEecCCHHHH-HHHH--hCCCCEEEecCccCCCCCcCCCCC-HHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 3455555443 3332 35777775 345655443222333 4789999887 999999999999999999999999999
Q ss_pred EEhhHhhch
Q 021527 277 IVGSAMVKL 285 (311)
Q Consensus 277 IVGSaiv~~ 285 (311)
+|||+|++.
T Consensus 208 ~VGsai~~p 216 (229)
T 3q58_A 208 TVGSAITRI 216 (229)
T ss_dssp EECHHHHCH
T ss_pred EEchHhcCh
Confidence 999999984
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=141.36 Aligned_cols=184 Identities=14% Similarity=0.162 Sum_probs=125.1
Q ss_pred EEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 66 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 66 i~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
+..|+......+.+.+.++.+.++|+|+||+..++.+|..-|+ +. +..+.++++.+..++|+++.
T Consensus 20 i~~It~~~~~~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~-~~--------------~~~~~l~~~~~~~~v~v~v~ 84 (227)
T 2tps_A 20 VYFIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEA-RI--------------KFAEKAQAACREAGVPFIVN 84 (227)
T ss_dssp EEEEECGGGCSSCHHHHHHHHHHHTCSEEEECCCSTTCCCHHH-HH--------------HHHHHHHHHHHHHTCCEEEE
T ss_pred EEEEECCccccchHHHHHHHHHHCCCCEEEEecCCCCHhHHHH-HH--------------HHHHHHHHHHHHcCCeEEEc
Confidence 3445544322122889999999999999999988877744443 11 22334445444567888773
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ec
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SS 224 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~ 224 (311)
++++.+.++|+|++++++.+.+ . ....+.+|. .+..+++.++.+ +....+ .|+.|+. +.
T Consensus 85 ------------~~~~~a~~~gad~v~l~~~~~~-~---~~~~~~~g~-~~~~~s~~t~~e-~~~a~~--~g~d~v~~~~ 144 (227)
T 2tps_A 85 ------------DDVELALNLKADGIHIGQEDAN-A---KEVRAAIGD-MILGVSAHTMSE-VKQAEE--DGADYVGLGP 144 (227)
T ss_dssp ------------SCHHHHHHHTCSEEEECTTSSC-H---HHHHHHHTT-SEEEEEECSHHH-HHHHHH--HTCSEEEECC
T ss_pred ------------CHHHHHHHcCCCEEEECCCccC-H---HHHHHhcCC-cEEEEecCCHHH-HHHHHh--CCCCEEEECC
Confidence 3567788999999999887643 2 233344676 666777777765 444333 4566663 32
Q ss_pred CCccCCCCC-CCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 225 IGVTGARAS-ISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 225 ~G~TG~~~~-~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
...|+.+.+ ..+...+.++++++.++ +|+++++||+ ++++.++.+.|||||+|||++.+.
T Consensus 145 v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~ 206 (227)
T 2tps_A 145 IYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVSMISAISQA 206 (227)
T ss_dssp SSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEESHHHHTS
T ss_pred CcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEEEhHHhhcC
Confidence 234554433 22223467888888877 9999999998 899999999999999999999873
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-15 Score=137.44 Aligned_cols=217 Identities=16% Similarity=0.133 Sum_probs=150.5
Q ss_pred ChhHHHHHHHHHHHcCCccEEEEEeCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 46 PTVGLAETFTRLKKQGKVALIPYITAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 46 ~m~~i~~~f~~~~~~~~~~li~yi~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
.|+.+.+..+.+..+++-...+--.+|.|-. ....++++++.++|+..|+++ +
T Consensus 3 ~~~~~~~~~~~~~~~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~---------~---------------- 57 (232)
T 3igs_A 3 AMSLLEQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIE---------G---------------- 57 (232)
T ss_dssp CCCHHHHHHHHHHHHCCEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEE---------S----------------
T ss_pred hHHHHHHHHHHhhhcCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEEC---------C----------------
Confidence 3666666666664455433334447777754 568999999999999999995 1
Q ss_pred HHHHHHHHHHhhccCCCcEEEEe---cCc-chhccCHHHHHHHHHHcCCcEEEecC---CChhhHHHHHHHHHHcCCCeE
Q 021527 124 FNAILSMLKEVVPQMSCPIALFT---YYN-PILKRGVDNFMSTVRDIGIRGLVVPD---VPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 124 ~~~~~~~i~~ir~~~~iPiilm~---Y~n-~i~~~g~~~fi~~~~~aGadGviipD---lp~ee~~~~~~~~~~~gi~~I 196 (311)
++.++++|+.+++|++-.. |.+ +++.....+.++.+.++|+|.+++-- ..++...++.+.++++|+..
T Consensus 58 ----~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v- 132 (232)
T 3igs_A 58 ----IDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLT- 132 (232)
T ss_dssp ----HHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEE-
T ss_pred ----HHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCCCEE-
Confidence 2478899999999985322 332 24444445678889999999887632 12366788888999887654
Q ss_pred EEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcE
Q 021527 197 LFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADG 275 (311)
Q Consensus 197 ~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADG 275 (311)
++..++.++ .+... ..|+.|+. ...|.|+......++ .++++++++. ++||++.+||+|++|+.++++.||||
T Consensus 133 -~~~v~t~ee-a~~a~--~~Gad~Ig~~~~g~t~~~~~~~~~-~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~~Gadg 206 (232)
T 3igs_A 133 -MADCSSVDD-GLACQ--RLGADIIGTTMSGYTTPDTPEEPD-LPLVKALHDA-GCRVIAEGRYNSPALAAEAIRYGAWA 206 (232)
T ss_dssp -EEECCSHHH-HHHHH--HTTCSEEECTTTTSSSSSCCSSCC-HHHHHHHHHT-TCCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred -EEeCCCHHH-HHHHH--hCCCCEEEEcCccCCCCCCCCCCC-HHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCE
Confidence 345555544 33332 35777775 345555432222333 4788999887 99999999999999999999999999
Q ss_pred EEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 276 VIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 276 vIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
|+|||+|++.. +..++|.+.++.
T Consensus 207 V~VGsal~~p~----------~~~~~~~~~i~~ 229 (232)
T 3igs_A 207 VTVGSAITRLE----------HICGWYNDALKK 229 (232)
T ss_dssp EEECHHHHCHH----------HHHHHHHHHHHH
T ss_pred EEEehHhcCHH----------HHHHHHHHHHHH
Confidence 99999999733 234556555554
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-16 Score=139.93 Aligned_cols=181 Identities=19% Similarity=0.174 Sum_probs=131.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...+.++.+.++|+|.|++- |+..+++ +....++.++++++.+++|+++.++.+..
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~----~~~~~~~--------------~~~~~~~~i~~i~~~~~ipvi~~g~i~~~----- 89 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAIL----DITAAPE--------------GRATFIDSVKRVAEAVSIPVLVGGGVRSL----- 89 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEE----ECCCCTT--------------THHHHHHHHHHHHHHCSSCEEEESSCCSH-----
T ss_pred ccHHHHHHHHHHcCCCEEEEE----eCCcccc--------------CCcccHHHHHHHHHhcCCCEEEECCCCCH-----
Confidence 467899999999999999995 3333321 11123568888988889999998876633
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE-EEeCC-------------------CChHHHHHHHHHhCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV-LFTTP-------------------TTPTDRMKAIVEASE 216 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I-~lisp-------------------~t~~eri~~i~~~a~ 216 (311)
+ .++.+.++|+|+++++...+++...+.+.++.+|.+.+ ..++. .++.++++.+.+..-
T Consensus 90 ~-~~~~~~~~Gad~V~i~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~ 168 (253)
T 1h5y_A 90 E-DATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGA 168 (253)
T ss_dssp H-HHHHHHHHTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTC
T ss_pred H-HHHHHHHcCCCEEEEChHHhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCC
Confidence 2 45778889999999986555545556666777775422 11111 245677777777767
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+++++.+.. .+|...+.+ .+.++++++.+++|+++++||++++++.++.+.|||||+|||+|++.
T Consensus 169 d~i~~~~~~-~~g~~~~~~---~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~ 233 (253)
T 1h5y_A 169 GEILLTSID-RDGTGLGYD---VELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFR 233 (253)
T ss_dssp SEEEEEETT-TTTTCSCCC---HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred CEEEEeccc-CCCCcCcCC---HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcC
Confidence 788776543 334333332 46788888888999999999999999999999999999999999873
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=152.71 Aligned_cols=179 Identities=17% Similarity=0.159 Sum_probs=146.7
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEc----CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEec
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELG----VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTY 147 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG----~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y 147 (311)
..+.++.+++++.|+++|+|.||+| +|+|+|.+ ||.. .+.++.++++++. .++|+.+|+|
T Consensus 26 ~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~-g~~~--------------~~~~e~l~~i~~~~~~~~i~~l~~ 90 (345)
T 1nvm_A 26 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNY-GFGR--------------HTDLEYIEAVAGEISHAQIATLLL 90 (345)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTT-BCCS--------------SCHHHHHHHHHTTCSSSEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcc-cCCC--------------CCHHHHHHHHHhhCCCCEEEEEec
Confidence 3567899999999999999999998 99999987 7522 2235677777765 5789999976
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHhCCce-EEE
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEASEGF-VYL 221 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~a~gf-iY~ 221 (311)
.| ++.++|++.+.++|+|++.+++ +. ++..++.+.++++|++.++.+ +++++++++.++++...++ +|+
T Consensus 91 p~----~~~~~~i~~a~~aGvd~v~I~~-~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~ 165 (345)
T 1nvm_A 91 PG----IGSVHDLKNAYQAGARVVRVAT-HCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATC 165 (345)
T ss_dssp BT----TBCHHHHHHHHHHTCCEEEEEE-ETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSE
T ss_pred CC----cccHHHHHHHHhCCcCEEEEEE-eccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCE
Confidence 43 4568999999999999999985 44 578889999999999988887 8888889999998887777 788
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEE------eeCCCCHHHHHHHHHcCCcEE
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS--TKPVAV------GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v------GfGIst~e~v~~v~~~GADGv 276 (311)
++..+++|.. .|..+.++++++|+.+ ++|+.+ |.|+. +.....++|||-|
T Consensus 166 i~l~DT~G~~--~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avA---n~laA~~aGa~~v 223 (345)
T 1nvm_A 166 IYMADSGGAM--SMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVA---NSIVAVEEGCDRV 223 (345)
T ss_dssp EEEECTTCCC--CHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHH---HHHHHHHTTCCEE
T ss_pred EEECCCcCcc--CHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHH---HHHHHHHcCCCEE
Confidence 8888899975 3778899999999998 789888 77774 4556677998765
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=134.52 Aligned_cols=172 Identities=19% Similarity=0.193 Sum_probs=113.5
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh---hccCCCcEE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV---VPQMSCPIA 143 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i---r~~~~iPii 143 (311)
.+|++.. .. ...+.++.+.++|+|+|++..|+.++ ++.++.++++ .+..++|++
T Consensus 18 ~~It~~~-~~-~~~~~~~~~~~~G~~~i~l~~~~~~~---------------------~~~~~~~~~l~~~~~~~~v~v~ 74 (215)
T 1xi3_A 18 YVITDRR-LK-PEVESVREALEGGATAIQMRIKNAPT---------------------REMYEIGKTLRQLTREYDALFF 74 (215)
T ss_dssp EEECCTT-TS-CHHHHHHHHHHTTCSEEEECCCSCCH---------------------HHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEECCc-hh-hHHHHHHHHHHCCCCEEEECCCCCCH---------------------HHHHHHHHHHHHHHHHcCCeEE
Confidence 4456543 33 78899999999999999998765331 1222333333 334677877
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+. ++++.+.++|+|+++++ |++.++..++ . ...+..++..++.+ +....+ .|+.|+
T Consensus 75 v~------------~~~~~a~~~gad~v~l~~~~~~~~~~~~~----~---~~~~~~v~~~t~~e-~~~~~~--~g~d~i 132 (215)
T 1xi3_A 75 VD------------DRVDVALAVDADGVQLGPEDMPIEVAKEI----A---PNLIIGASVYSLEE-ALEAEK--KGADYL 132 (215)
T ss_dssp EE------------SCHHHHHHHTCSEEEECTTSCCHHHHHHH----C---TTSEEEEEESSHHH-HHHHHH--HTCSEE
T ss_pred Ec------------ChHHHHHHcCCCEEEECCccCCHHHHHHh----C---CCCEEEEecCCHHH-HHHHHh--cCCCEE
Confidence 72 35578889999999998 5555443332 1 23455556666655 333323 456666
Q ss_pred Ee-cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VS-SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs-~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.. ....|+++.+..+...+.++++++..++|+++++||+ ++++.++.+.|+|||+|||++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~ 195 (215)
T 1xi3_A 133 GAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAVISAVMG 195 (215)
T ss_dssp EEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEESHHHHT
T ss_pred EEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHHhC
Confidence 42 1123444333333345678888887899999999998 89999999999999999999987
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-16 Score=181.12 Aligned_cols=166 Identities=24% Similarity=0.319 Sum_probs=142.0
Q ss_pred CHHHHHHHHHHhhccC--CCcEEE-EecCcchh---ccCHHHHHHHHHHcC--CcEEEec-CCC-hhhHHHHHHHHHHcC
Q 021527 123 NFNAILSMLKEVVPQM--SCPIAL-FTYYNPIL---KRGVDNFMSTVRDIG--IRGLVVP-DVP-LEETESLQKEAMKNK 192 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~--~iPiil-m~Y~n~i~---~~g~~~fi~~~~~aG--adGviip-Dlp-~ee~~~~~~~~~~~g 192 (311)
+.+.+.+.|+++|+.+ ..|+.+ |.|+||.+ ++|.++|++.+.+.| +|||+++ |+| +||..++.+.++++|
T Consensus 464 ~~~~l~~~i~~~r~~~~~~~p~~vNl~~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~~ee~~~~i~~l~~~G 543 (3089)
T 3zen_D 464 TEQIFNDRIAELETLLEPGRAIQFNTLFLDPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPDLEEAVDIIDELNEVG 543 (3089)
T ss_dssp SHHHHHHHHHHHHHHSCTTCCCEEEEECSCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCCHHHHHHHHTSTTHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCceeechhhcChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCchhHhHHHHHHHHHcC
Confidence 6778888999998766 556533 46889987 788899999999999 9999998 999 799999999999999
Q ss_pred CCeEEEeCCCChHH-HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHH----HHHhhcCCCcEEEeeCCCCHHHHHH
Q 021527 193 IELVLFTTPTTPTD-RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLL----REIKESSTKPVAVGFGISKPEHVQQ 267 (311)
Q Consensus 193 i~~I~lisp~t~~e-ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l----~~vk~~~~~Pv~vGfGIst~e~v~~ 267 (311)
+.+|.+..+++.+. |+.++.....+|+|++...|.+|.......++..++ .++|+.+++||++||||.+++++..
T Consensus 544 i~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaa 623 (3089)
T 3zen_D 544 ISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSAE 623 (3089)
T ss_dssp HCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCSSSSEECCSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHH
T ss_pred CEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCCCcCCCCCcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHH
Confidence 99998887776554 677787778899999999998887655455666777 8899989999999999999999999
Q ss_pred HH-----------HcCCcEEEEhhHhhchhhh
Q 021527 268 VA-----------GWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 268 v~-----------~~GADGvIVGSaiv~~~~~ 288 (311)
++ ..|||||+|||+|+...+.
T Consensus 624 al~g~ws~~~~~p~lGAdGV~vGTrfl~t~Ea 655 (3089)
T 3zen_D 624 YLSGRWAEVHGYPLMPIDGILVGTAAMATLEA 655 (3089)
T ss_dssp HHHTGGGGTTTCCCCCCSEEECSSTTTTCTTS
T ss_pred HhccccccccCccCCCCCEEEecHHHHhCccc
Confidence 99 9999999999999998864
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-15 Score=135.74 Aligned_cols=181 Identities=16% Similarity=0.146 Sum_probs=123.2
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC--HHHHHHHHHHhhccCC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN--FNAILSMLKEVVPQMS 139 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~--~~~~~~~i~~ir~~~~ 139 (311)
++.++..|.|..+..+...+.++.+.++|.|.|++| |+ |++ .+++.+.++.+|+.++
T Consensus 38 ~~~~~~liDPdK~~~~~~~~~~~~~~~sGtDai~VG---S~------------------~vt~~~~~~~~~v~~ik~~~~ 96 (286)
T 3vk5_A 38 QPGPVHIIDPFKVPVTEAVEKAAELTRLGFAAVLLA---ST------------------DYESFESHMEPYVAAVKAATP 96 (286)
T ss_dssp CCEEEEEECTTTSCHHHHHHHHHHHHHTTCSCEEEE---CS------------------CCSSHHHHHHHHHHHHHHHCS
T ss_pred cCCceEEECCCCCCcHHHHHHHHHHHhcCCCEEEEc---cC------------------CCCcchHHHHHHHHHHHHhCC
Confidence 677887774444444677779999999999999999 44 366 6677889999998899
Q ss_pred CcEEE-Ee--cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHH-H---------HHH----HHcCCCeEEE----
Q 021527 140 CPIAL-FT--YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL-Q---------KEA----MKNKIELVLF---- 198 (311)
Q Consensus 140 iPiil-m~--Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~-~---------~~~----~~~gi~~I~l---- 198 (311)
+|+++ +- ..|+.- + .-|+|++++|-+-...-..| . ..+ +++| +.++.
T Consensus 97 lPvil~fPP~~g~~~~---i--------~~~aDa~l~psvlNs~n~~~i~g~~~~~~aa~~v~~~~~~~g-e~ip~gYL~ 164 (286)
T 3vk5_A 97 LPVVLHFPPRPGAGFP---V--------VRGADALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWP-ELLLTVALT 164 (286)
T ss_dssp SCEEEECCCBTTTBSC---C--------CTTCSEEEEEEETTBSSHHHHTHHHHHHHHHCSTTSCGGGCC-EEEEEEEEE
T ss_pred CCEEEECCCCCCCccc---c--------ccCCCEEEEEEEecCCCcccccCcHHHHHHhHHHHHHHHHhC-CcceEEEEE
Confidence 99999 75 123211 1 12689999986554221111 1 113 5666 65542
Q ss_pred eCCC------------ChHHHH--HHHHHhC----CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeC
Q 021527 199 TTPT------------TPTDRM--KAIVEAS----EGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFG 258 (311)
Q Consensus 199 isp~------------t~~eri--~~i~~~a----~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfG 258 (311)
+.+. .+.+.. ..++..+ .-++|+-. ++ + ..+ .++++++++.+ ++|+++|||
T Consensus 165 v~~g~k~V~fv~~~~~~~~e~A~~~aYa~~gad~G~~lV~LD~----~~-~-~v~---~e~V~~I~~~~~~~iPV~vGGG 235 (286)
T 3vk5_A 165 FGEDPRTGDLLGTVPVSTASTEEIDRYLHVARAFGFHMVYLYS----RN-E-HVP---PEVVRHFRKGLGPDQVLFVSGN 235 (286)
T ss_dssp CSCCHHHHHHHCBCCCCCSSSHHHHHHHHHHHHTTCSEEEEEC----SS-S-CCC---HHHHHHHHHHSCTTCEEEEESS
T ss_pred ECCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEcC----CC-C-cCC---HHHHHHHHHhcCCCCCEEEEeC
Confidence 2222 111222 3344432 25788752 22 1 222 37899999988 899999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|+|+|++++++++|||+|||||++++
T Consensus 236 Irs~Eda~~ll~aGAD~VVVGSAav~ 261 (286)
T 3vk5_A 236 VRSGRQVTEYLDSGADYVGFAGALEQ 261 (286)
T ss_dssp CCSHHHHHHHHHTTCSEEEESGGGSS
T ss_pred CCCHHHHHHHHHcCCCEEEECchhhc
Confidence 99999999999999999999999987
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-15 Score=133.34 Aligned_cols=192 Identities=17% Similarity=0.236 Sum_probs=135.8
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIA 143 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPii 143 (311)
+.|=|.+- |+....+.++.+.++|+|++|++ +.||.++.. +..| ...++.+|+.+ +.|+.
T Consensus 8 i~pSila~--D~~~l~~~i~~~~~~g~d~iHvD------vmDg~fvpn-----~t~G------~~~v~~lr~~~p~~~~d 68 (227)
T 1tqx_A 8 IAPSVLAS--NISKLAEETQRMESLGAEWIHLD------VMDMHFVPN-----LSFG------PPVINNLKKYTKSIFFD 68 (227)
T ss_dssp EEEBGGGS--CGGGHHHHHHHHHHTTCSEEEEE------EEBSSSSSC-----BCCC------HHHHHHHGGGCSSCEEE
T ss_pred EEeehhcC--ChhhHHHHHHHHHHcCCCEEEEE------EEeCCcCcc-----hhcC------HHHHHHHHHhCCCCcEE
Confidence 33444443 34677888999999999999998 445532221 0011 35888888877 77754
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChh-hHHHHHH---HHHHcCCCeEEEeCCCChHHHHHHHHHhC-Cce
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE-ETESLQK---EAMKNKIELVLFTTPTTPTDRMKAIVEAS-EGF 218 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~e-e~~~~~~---~~~~~gi~~I~lisp~t~~eri~~i~~~a-~gf 218 (311)
+-..-+. .+++++.+.+ +|.+.++=-... ...+..+ .++++|.+...-+.|.|+.++++.+.... -.+
T Consensus 69 vhLmv~d-----p~~~i~~~~~--Ad~itvH~ea~~~~~~~~i~~~~~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~ 141 (227)
T 1tqx_A 69 VHLMVEY-----PEKYVPLLKT--SNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINT 141 (227)
T ss_dssp EEEESSC-----GGGGGGGCTT--SSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSE
T ss_pred EEEEEcC-----HHHHHHHHHh--CCEEEEeecCCccCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCE
Confidence 4332232 2345555544 888877521111 3455667 89999998888889999988888776532 567
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++++++....|.+ ...+...+.++++|+.. +.+|.|.+||+ ++++.++.++|||.+|+||++.+
T Consensus 142 VlvmsV~pGf~gq-~f~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~ti~~~~~aGAd~~V~GsaIf~ 206 (227)
T 1tqx_A 142 VLVMTVEPGFGGQ-SFMHDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISASHGANIIVAGTSIFN 206 (227)
T ss_dssp EEEESSCTTCSSC-CCCGGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHHHHTCCEEEESHHHHT
T ss_pred EEEeeeccCCCCc-ccchHHHHHHHHHHHhccCCeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 8888877766655 34555667899999876 78999999997 89999999999999999999997
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-14 Score=128.89 Aligned_cols=199 Identities=14% Similarity=0.168 Sum_probs=134.7
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
+.+.+......++..+|.=+=--.|+. -.-.++++.++++||++|.+- +||-+-+ | +
T Consensus 46 f~~al~~~~~~~~~~vIaE~KraSPSkG~i~~~~dp~~~A~~y~~~GA~~IsVl---td~~~f~-------------G-s 108 (272)
T 3tsm_A 46 FLKALEAKRAAGQFALIAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVL---TDTPSFQ-------------G-A 108 (272)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSEETTTEESCSSCCHHHHHHHHHHTTCSEEEEE---CCSTTTC-------------C-C
T ss_pred HHHHHhhccccCCceEEEEeccCCCCCCccCCCCCHHHHHHHHHHCCCCEEEEe---ccccccC-------------C-C
Confidence 444444333356788887663333332 145799999999999999995 3432221 1 2
Q ss_pred HHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCC
Q 021527 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTP 201 (311)
Q Consensus 124 ~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp 201 (311)
++.++++|+.+++||+...|..+.+ .+..+.++|+|+|++. +++.++..++.+.+++.|++.+.-+
T Consensus 109 ----~~~L~~ir~~v~lPVl~Kdfi~d~~------qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvev-- 176 (272)
T 3tsm_A 109 ----PEFLTAARQACSLPALRKDFLFDPY------QVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEV-- 176 (272)
T ss_dssp ----HHHHHHHHHTSSSCEEEESCCCSTH------HHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEE--
T ss_pred ----HHHHHHHHHhcCCCEEECCccCCHH------HHHHHHHcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEe--
Confidence 2467788888999998776654333 3667899999997774 7877788999999999998766544
Q ss_pred CChHHHHHHHHHhCCceEEEEecCCccCCC-CCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 202 TTPTDRMKAIVEASEGFVYLVSSIGVTGAR-ASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 202 ~t~~eri~~i~~~a~gfiY~vs~~G~TG~~-~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
++. +.++... ..|+.|+. ++... ..+..++ +...++.+.. ++|++.++||+|+||++++.++|||||+|
T Consensus 177 h~~-eEl~~A~--~~ga~iIG----innr~l~t~~~dl-~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 177 HDE-AEMERAL--KLSSRLLG----VNNRNLRSFEVNL-AVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLI 248 (272)
T ss_dssp CSH-HHHHHHT--TSCCSEEE----EECBCTTTCCBCT-HHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEE
T ss_pred CCH-HHHHHHH--hcCCCEEE----ECCCCCccCCCCh-HHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 343 4443332 34554442 22111 1122232 3344444443 68999999999999999999999999999
Q ss_pred hhHhhch
Q 021527 279 GSAMVKL 285 (311)
Q Consensus 279 GSaiv~~ 285 (311)
||+|++.
T Consensus 249 G~almr~ 255 (272)
T 3tsm_A 249 GESLMRQ 255 (272)
T ss_dssp CHHHHTS
T ss_pred cHHHcCC
Confidence 9999994
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=123.85 Aligned_cols=197 Identities=15% Similarity=0.186 Sum_probs=131.9
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCCh--h--hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDL--S--TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~--~--~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
+.+.++ +++...+++...+.|.. + ...+.++.+.++|+++++++ +|
T Consensus 9 ~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~---------~~------------------- 58 (234)
T 1yxy_A 9 KLMEQL--KGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN---------SV------------------- 58 (234)
T ss_dssp HHHHHH--TTSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE---------SH-------------------
T ss_pred HHHHHH--hCCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecC---------CH-------------------
Confidence 455555 45566677888888775 4 77999999999999999985 21
Q ss_pred HHHHHHhhccCCCcEEEEe---cCc-chhccCHHHHHHHHHHcCCcEEEecCC----Ch-hhHHHHHHHHHHcCCCeEEE
Q 021527 128 LSMLKEVVPQMSCPIALFT---YYN-PILKRGVDNFMSTVRDIGIRGLVVPDV----PL-EETESLQKEAMKNKIELVLF 198 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~---Y~n-~i~~~g~~~fi~~~~~aGadGviipDl----p~-ee~~~~~~~~~~~gi~~I~l 198 (311)
+.++.+|+.+++|++-.. |-+ .++.....+.++.+.++|+|.|.+.-. |. +...++.+.+++..-+....
T Consensus 59 -~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~ 137 (234)
T 1yxy_A 59 -RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLM 137 (234)
T ss_dssp -HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred -HHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEE
Confidence 357778888899984221 100 111222356788999999999988422 11 23445666666652123444
Q ss_pred eCCCChHHHHHHHHHhCCceEEEE-ecCCccC-CCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 199 TTPTTPTDRMKAIVEASEGFVYLV-SSIGVTG-ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 199 isp~t~~eri~~i~~~a~gfiY~v-s~~G~TG-~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
+.+.+.++ ..... ..|..|+. ...|++. .+....++ .+.++++++. ++||++.+||+|++++.++++.|||+|
T Consensus 138 ~~~~t~~e-a~~a~--~~Gad~i~~~v~g~~~~~~~~~~~~-~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~Gad~v 212 (234)
T 1yxy_A 138 ADISTFDE-GLVAH--QAGIDFVGTTLSGYTPYSRQEAGPD-VALIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGI 212 (234)
T ss_dssp EECSSHHH-HHHHH--HTTCSEEECTTTTSSTTSCCSSSCC-HHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEE
T ss_pred EeCCCHHH-HHHHH--HcCCCEEeeeccccCCCCcCCCCCC-HHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEE
Confidence 56667655 33322 35666662 3344432 22112233 4678888887 899999999999999999999999999
Q ss_pred EEhhHhhc
Q 021527 277 IVGSAMVK 284 (311)
Q Consensus 277 IVGSaiv~ 284 (311)
+|||+|.+
T Consensus 213 ~vGsal~~ 220 (234)
T 1yxy_A 213 VVGGAITR 220 (234)
T ss_dssp EECHHHHC
T ss_pred EEchHHhC
Confidence 99999987
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=122.30 Aligned_cols=177 Identities=18% Similarity=0.235 Sum_probs=119.7
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
..+.++.+.++|+|.|++-. .||. . .|.. .. +.++++++.+++|+++-+-.+ ..+
T Consensus 34 ~~~~a~~~~~~Gad~i~v~~------~d~~---------~-~~~~-~~--~~i~~i~~~~~ipv~v~ggI~-----~~~- 88 (244)
T 1vzw_A 34 PLEAALAWQRSGAEWLHLVD------LDAA---------F-GTGD-NR--ALIAEVAQAMDIKVELSGGIR-----DDD- 88 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEE------HHHH---------H-TSCC-CH--HHHHHHHHHCSSEEEEESSCC-----SHH-
T ss_pred HHHHHHHHHHcCCCEEEEec------Cchh---------h-cCCC-hH--HHHHHHHHhcCCcEEEECCcC-----CHH-
Confidence 47888999999999999941 2231 1 1211 11 578888888999999876443 223
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC--------------ChHHHHHHHHHhCCceEEEEec
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT--------------TPTDRMKAIVEASEGFVYLVSS 224 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~--------------t~~eri~~i~~~a~gfiY~vs~ 224 (311)
.++.+.++|+|+|++.-........+.+.++.+|-..+..+++. ++.+.++.+.+..-+.+.+.+.
T Consensus 89 ~~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~ 168 (244)
T 1vzw_A 89 TLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDI 168 (244)
T ss_dssp HHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC
T ss_pred HHHHHHHcCCCEEEECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCCCCEEEEecc
Confidence 48888899999999863222233345666667675555545543 5556666665654555555432
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc---CCcEEEEhhHhhc
Q 021527 225 IGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW---GADGVIVGSAMVK 284 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~---GADGvIVGSaiv~ 284 (311)
.. -|...+.+ .+.++++++.+++||++.+||++++++.++++. |||||+|||++.+
T Consensus 169 ~~-~~~~~g~~---~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~ 227 (244)
T 1vzw_A 169 AK-DGTLQGPN---LELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYA 227 (244)
T ss_dssp --------CCC---HHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred Cc-ccccCCCC---HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHc
Confidence 21 11112222 467888988889999999999999999999999 9999999999997
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-13 Score=121.25 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=116.8
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH---HHHHhhccCCCcEEEE
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS---MLKEVVPQMSCPIALF 145 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~---~i~~ir~~~~iPiilm 145 (311)
||......+.+.+.++.+.++|+++|++ +++-.++.. +-...+.+++++ .++++.++.++|+++.
T Consensus 35 It~~~~~~~~~~~~~~~al~~Gv~~vql----R~K~~~~~~--------~~~~l~~~~~~~~a~~l~~l~~~~~~~liIn 102 (243)
T 3o63_A 35 CTDARRERGDLAQFAEAALAGGVDIIQL----RDKGSPGEL--------RFGPLQARDELAACEILADAAHRYGALFAVN 102 (243)
T ss_dssp EECCCTTTCCHHHHHHHHHHTTCSEEEE----CCTTCHHHH--------HHCSCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EECCCcccchHHHHHHHHHHCCCCEEEE----ccCCCCccc--------cccCCCHHHHHHHHHHHHHHHHhhCCEEEEe
Confidence 3433333356889999999999999999 455322000 000011223333 3444455678999994
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV- 222 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v- 222 (311)
. .++.+.+.|+|||+++ |+|..+..++ .+.+.++.++..+.+| +.+..+ .|+.|+.
T Consensus 103 d------------~~~lA~~~gAdGVHLg~~dl~~~~~r~~------~~~~~~iG~S~ht~~E-a~~A~~--~GaDyI~v 161 (243)
T 3o63_A 103 D------------RADIARAAGADVLHLGQRDLPVNVARQI------LAPDTLIGRSTHDPDQ-VAAAAA--GDADYFCV 161 (243)
T ss_dssp S------------CHHHHHHHTCSEEEECTTSSCHHHHHHH------SCTTCEEEEEECSHHH-HHHHHH--SSCSEEEE
T ss_pred C------------HHHHHHHhCCCEEEecCCcCCHHHHHHh------hCCCCEEEEeCCCHHH-HHHHhh--CCCCEEEE
Confidence 2 3455778899999997 7876554432 3556677777777655 333323 5777773
Q ss_pred -ecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 223 -SSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 223 -s~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.+ .|.++...++...+.++++++. .++|+++-+|| +++++.++.+.|||||.|||+|.+
T Consensus 162 gpvf-~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~ 224 (243)
T 3o63_A 162 GPCW-PTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITS 224 (243)
T ss_dssp CCSS-CCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHT
T ss_pred cCcc-CCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhC
Confidence 223 2444433333335778888876 58999999999 689999999999999999999997
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=135.79 Aligned_cols=188 Identities=20% Similarity=0.243 Sum_probs=121.4
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc--CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG--VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG--~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
+..+|+++.+ .+.++.+.++|+++|++- +|+ ..++ ..|.+..+.++.++++++.++
T Consensus 21 ~~~~i~~~~~--------~~~a~~~~~~Ga~~i~~~e~v~~-------------~~~~-~~G~~~~~~~~~i~~i~~~~~ 78 (297)
T 2zbt_A 21 KGGVIMDVTT--------PEQAVIAEEAGAVAVMALERVPA-------------DIRA-QGGVARMSDPKIIKEIMAAVS 78 (297)
T ss_dssp TTEEEEEESS--------HHHHHHHHHHTCSEEEECSSCHH-------------HHHH-TTCCCCCCCHHHHHHHHTTCS
T ss_pred hCCeeeeech--------HHHHHHHHHCCCcEEEeccccch-------------HHHh-hcCCccCCCHHHHHHHHHhcC
Confidence 4568888865 789999999999999982 221 1122 235333334578889998899
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCC-ChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV-PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl-p~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
+|+++..- .+..++++.+.++|+|+|..+.. ++.+ +.+.++++++...+++..+++++..+ . ...|+
T Consensus 79 ~Pvi~~~~------~~~~~~~~~~~~aGad~v~~~~~~~~~~---~~~~~~~~~~~i~l~~~v~~~~~~~~-a--~~~Ga 146 (297)
T 2zbt_A 79 IPVMAKVR------IGHFVEAMILEAIGVDFIDESEVLTPAD---EEHHIDKWKFKVPFVCGARNLGEALR-R--IAEGA 146 (297)
T ss_dssp SCEEEEEE------TTCHHHHHHHHHTTCSEEEEETTSCCSC---SSCCCCGGGCSSCEEEEESSHHHHHH-H--HHTTC
T ss_pred CCeEEEec------cCCHHHHHHHHHCCCCEEeeeCCCChHH---HHHHHHHhCCCceEEeecCCHHHHHH-H--HHcCC
Confidence 99886431 23368899999999999944321 1111 22233333333223323345555543 2 34677
Q ss_pred EEEEecCC--------------------------ccCCCC----CCCchHHHHHHHHhhcCCCcEE--EeeCCCCHHHHH
Q 021527 219 VYLVSSIG--------------------------VTGARA----SISGHVQTLLREIKESSTKPVA--VGFGISKPEHVQ 266 (311)
Q Consensus 219 iY~vs~~G--------------------------~TG~~~----~~~~~~~~~l~~vk~~~~~Pv~--vGfGIst~e~v~ 266 (311)
.|+.. .| .|+... ...+...+.++++++.+++|++ +.+||++++++.
T Consensus 147 d~I~v-~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~ 225 (297)
T 2zbt_A 147 AMIRT-KGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAA 225 (297)
T ss_dssp SEEEE-CCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHH
T ss_pred CEEEE-cccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHH
Confidence 67532 22 221110 0011124678889888889988 899999999999
Q ss_pred HHHHcCCcEEEEhhHhhc
Q 021527 267 QVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 267 ~v~~~GADGvIVGSaiv~ 284 (311)
++.++|||||+|||++++
T Consensus 226 ~~~~aGadgvvvGsai~~ 243 (297)
T 2zbt_A 226 LMMHLGMDGVFVGSGIFK 243 (297)
T ss_dssp HHHHTTCSEEEECGGGGG
T ss_pred HHHHcCCCEEEEchHHhC
Confidence 999999999999999997
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-13 Score=121.54 Aligned_cols=177 Identities=18% Similarity=0.220 Sum_probs=119.8
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
..+.++.+.++|+|.|++-. .||. ...+.+. +.++++++.+++|+++-+-.+ ..+
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~------~d~~---------~~~~~~~----~~i~~i~~~~~ipv~v~ggi~-----~~~- 87 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVD------LDAA---------FGRGSNH----ELLAEVVGKLDVQVELSGGIR-----DDE- 87 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEE------HHHH---------TTSCCCH----HHHHHHHHHCSSEEEEESSCC-----SHH-
T ss_pred HHHHHHHHHHcCCCEEEEEc------Cccc---------ccCCChH----HHHHHHHHhcCCcEEEECCCC-----CHH-
Confidence 48899999999999999941 1221 1111121 578888888899999865443 223
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC------------------ChHHHHHHHHHhCCceEE
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT------------------TPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~------------------t~~eri~~i~~~a~gfiY 220 (311)
.++.+.++|+|++++.-........+.+.++.+|-..+..+++. ++.+.++.+.+..-+.+.
T Consensus 88 ~~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~ 167 (244)
T 2y88_A 88 SLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFV 167 (244)
T ss_dssp HHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHcCCCEEEECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCCCCEEE
Confidence 48888889999999863222233345555666664444444433 345666666555455555
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc---CCcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW---GADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~---GADGvIVGSaiv~ 284 (311)
+.++.. .|...+.+ .+.++++++.+++||++.+||++++++.++.+. |||||+|||++.+
T Consensus 168 ~~~~~~-~~~~~g~~---~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~ 230 (244)
T 2y88_A 168 VTDITK-DGTLGGPN---LDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYA 230 (244)
T ss_dssp EEETTT-TTTTSCCC---HHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred EEecCC-ccccCCCC---HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHC
Confidence 544321 12212222 467888888889999999999999999999998 9999999999987
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-12 Score=112.51 Aligned_cols=188 Identities=14% Similarity=0.165 Sum_probs=127.8
Q ss_pred ccEEE--EEeCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC
Q 021527 63 VALIP--YITAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM 138 (311)
Q Consensus 63 ~~li~--yi~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~ 138 (311)
..||. -...|.|-. +.+.+.++.+.++|+++++++ + .+.++++|+.+
T Consensus 5 ~~~~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~---------~--------------------~~~i~~i~~~~ 55 (223)
T 1y0e_A 5 HGLIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRAN---------T--------------------KEDILAIKETV 55 (223)
T ss_dssp SEEEEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEE---------S--------------------HHHHHHHHHHC
T ss_pred CCeEEEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccC---------C--------------------HHHHHHHHHhc
Confidence 34554 345665543 578999999999999999985 2 13677788888
Q ss_pred CCcEEEEe---cCc-chhccCHHHHHHHHHHcCCcEEEecCC----ChhhHHHHHHHHHHc--CCCeEEEeCCCChHHHH
Q 021527 139 SCPIALFT---YYN-PILKRGVDNFMSTVRDIGIRGLVVPDV----PLEETESLQKEAMKN--KIELVLFTTPTTPTDRM 208 (311)
Q Consensus 139 ~iPiilm~---Y~n-~i~~~g~~~fi~~~~~aGadGviipDl----p~ee~~~~~~~~~~~--gi~~I~lisp~t~~eri 208 (311)
++|++-.. +-+ .++.....+.++.+.++|+|.+++.-. |.+...++.+.+++. |+. ..+.+.++++ .
T Consensus 56 ~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~--v~~~~~t~~e-~ 132 (223)
T 1y0e_A 56 DLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVE--IMADIATVEE-A 132 (223)
T ss_dssp CSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSE--EEEECSSHHH-H
T ss_pred CCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCce--EEecCCCHHH-H
Confidence 99984211 101 122122356788899999999987522 113345677777776 643 3457777655 3
Q ss_pred HHHHHhCCceEEEEe-cCCccCCCCCC--CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 209 KAIVEASEGFVYLVS-SIGVTGARASI--SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 209 ~~i~~~a~gfiY~vs-~~G~TG~~~~~--~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.. ..|..|+.. ..|.|+..... .....+.++++++.+++||++.+||++++++.++++.|||+|+|||+|.+
T Consensus 133 ~~~~--~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~ 209 (223)
T 1y0e_A 133 KNAA--RLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (223)
T ss_dssp HHHH--HTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHH--HcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC
Confidence 3332 356666653 34556543322 22334678899888899999999999999999999999999999999987
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-12 Score=112.94 Aligned_cols=172 Identities=16% Similarity=0.189 Sum_probs=118.2
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI 142 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi 142 (311)
..+++=|.. .|.+...+.++.+.++|+|+||+..+ || .. ++.++++++.+++|+
T Consensus 7 ~~i~~~i~~--~d~~~~~~~~~~~~~~G~~~i~l~~~--~~----~~------------------~~~i~~i~~~~~~~l 60 (212)
T 2v82_A 7 LPLIAILRG--ITPDEALAHVGAVIDAGFDAVEIPLN--SP----QW------------------EQSIPAIVDAYGDKA 60 (212)
T ss_dssp SCEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEETT--ST----TH------------------HHHHHHHHHHHTTTS
T ss_pred CCEEEEEeC--CCHHHHHHHHHHHHHCCCCEEEEeCC--Ch----hH------------------HHHHHHHHHhCCCCe
Confidence 346665543 45688999999999999999999744 22 11 235556665566776
Q ss_pred EEE--ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 143 ALF--TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 143 ilm--~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
++- +..+ .+.++.+.++|+|+|+++.... ++.+.++++|.+.++- ..++.+- ....+ .|+.|
T Consensus 61 ~vg~g~~~~-------~~~i~~a~~~Gad~V~~~~~~~----~~~~~~~~~g~~~~~g--~~t~~e~-~~a~~--~G~d~ 124 (212)
T 2v82_A 61 LIGAGTVLK-------PEQVDALARMGCQLIVTPNIHS----EVIRRAVGYGMTVCPG--CATATEA-FTALE--AGAQA 124 (212)
T ss_dssp EEEEECCCS-------HHHHHHHHHTTCCEEECSSCCH----HHHHHHHHTTCEEECE--ECSHHHH-HHHHH--TTCSE
T ss_pred EEEeccccC-------HHHHHHHHHcCCCEEEeCCCCH----HHHHHHHHcCCCEEee--cCCHHHH-HHHHH--CCCCE
Confidence 662 2222 3578899999999999776432 3456778889775543 4555443 33223 46666
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCC--CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESST--KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+.- +. |+ ....+.++++++..+ +||++.+||+ ++++.++.+.|||||+|||+|.+.
T Consensus 125 v~v-~~-t~------~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 125 LKI-FP-SS------AFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp EEE-TT-HH------HHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEECTTTCCT
T ss_pred EEE-ec-CC------CCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 541 21 11 112367888888775 9999999998 899999999999999999999984
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-12 Score=114.15 Aligned_cols=184 Identities=16% Similarity=0.218 Sum_probs=121.6
Q ss_pred CccEEEEEeCCCCCh-----hhHHHHHHHHHHCCCCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 021527 62 KVALIPYITAGDPDL-----STTAEALKLLDSCGSDIIELGVPYSDPLA-DGPVIQAAATRSLARGTNFNAILSMLKEVV 135 (311)
Q Consensus 62 ~~~li~yi~~G~P~~-----~~~~e~~~~L~~~GaD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir 135 (311)
+..+|.=+=--.|+. ....++++.++++|+++|++- +|+-+ .| + ++.++.++
T Consensus 45 ~~~~IaE~k~aSPskg~i~~~~p~~~A~~~~~~GA~~isvl---t~~~~f~G---------------~----~~~l~~i~ 102 (254)
T 1vc4_A 45 GLSVIAEVKRQSPSEGLIREVDPVEAALAYARGGARAVSVL---TEPHRFGG---------------S----LLDLKRVR 102 (254)
T ss_dssp SCEEEEEECSCCTTTCCCCSCCHHHHHHHHHHTTCSEEEEE---CCCSSSCC---------------C----HHHHHHHH
T ss_pred CCcEEeeecCCCcCCCcCCCCCHHHHHHHHHHcCCCEEEEe---cchhhhcc---------------C----HHHHHHHH
Confidence 356666553333332 245899999999999999993 33322 23 1 24667777
Q ss_pred ccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH
Q 021527 136 PQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 136 ~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~ 213 (311)
+.+++||..-.+..+- . -+..+.++|+|+|++. +++ ++..++...++.+|++...-+. +.+ .+....+
T Consensus 103 ~~v~lPvl~kdfI~d~-----~-qi~~a~~~GAD~VlL~~~~l~-~~l~~l~~~a~~lGl~~lvev~--~~~-E~~~a~~ 172 (254)
T 1vc4_A 103 EAVDLPLLRKDFVVDP-----F-MLEEARAFGASAALLIVALLG-ELTGAYLEEARRLGLEALVEVH--TER-ELEIALE 172 (254)
T ss_dssp HHCCSCEEEESCCCSH-----H-HHHHHHHTTCSEEEEEHHHHG-GGHHHHHHHHHHHTCEEEEEEC--SHH-HHHHHHH
T ss_pred HhcCCCEEECCcCCCH-----H-HHHHHHHcCCCEEEECccchH-HHHHHHHHHHHHCCCeEEEEEC--CHH-HHHHHHH
Confidence 7899998775543322 2 3567899999999985 566 7788888888899988764443 333 3334434
Q ss_pred hCCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 214 ASEGFVYL-VSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 214 ~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
... .|+ +.....|.. ..++ +.+.++++.. ++|++..+||+|++|+.++.+ |+|||+|||+|++.
T Consensus 173 ~ga--d~IGvn~~~l~~~----~~dl-~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~ 242 (254)
T 1vc4_A 173 AGA--EVLGINNRDLATL----HINL-ETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRA 242 (254)
T ss_dssp HTC--SEEEEESBCTTTC----CBCT-THHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTS
T ss_pred cCC--CEEEEccccCcCC----CCCH-HHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCC
Confidence 333 343 222222222 2222 2334444433 689999999999999999999 99999999999984
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=122.45 Aligned_cols=185 Identities=18% Similarity=0.233 Sum_probs=126.0
Q ss_pred HHHHHHH-cCCccEEEEEeCCCCChhhHHHHHHHHHH-CCCCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 53 TFTRLKK-QGKVALIPYITAGDPDLSTTAEALKLLDS-CGSDIIELGVPYSDPLA-DGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 53 ~f~~~~~-~~~~~li~yi~~G~P~~~~~~e~~~~L~~-~GaD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
.+.++++ .....+++-+.. ++.+.+.+.++.+.+ +|+|.||+. |+.|.. +| ....|.+.+.+.+
T Consensus 88 ~~~~~~~~~~~~p~~v~l~~--~~~~~~~~~a~~~~~~~g~d~iei~--~~~p~~~~g---------~~~~g~~~~~~~e 154 (311)
T 1ep3_A 88 KLPWLNENFPELPIIANVAG--SEEADYVAVCAKIGDAANVKAIELN--ISCPNVKHG---------GQAFGTDPEVAAA 154 (311)
T ss_dssp HHHHHHHHCTTSCEEEEECC--SSHHHHHHHHHHHTTSTTEEEEEEE--CCSEEGGGT---------TEEGGGCHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEcC--CCHHHHHHHHHHHhccCCCCEEEEe--CCCCCCCCc---------hhhhcCCHHHHHH
Confidence 3444554 324557666654 356889999999998 999999997 455543 11 1223446667788
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHH
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMK 209 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~ 209 (311)
+++++++.+++|+++..+.+. ....++++.+.++|+|+|++.+.+ .|.. +.+.+...++
T Consensus 155 ii~~v~~~~~~pv~vk~~~~~---~~~~~~a~~l~~~G~d~i~v~~~~-------------~g~~----i~~~~~~~~~- 213 (311)
T 1ep3_A 155 LVKACKAVSKVPLYVKLSPNV---TDIVPIAKAVEAAGADGLTMINTL-------------MGVR----FDLKTRQPIL- 213 (311)
T ss_dssp HHHHHHHHCSSCEEEEECSCS---SCSHHHHHHHHHTTCSEEEECCCE-------------EECC----BCTTTCSBSS-
T ss_pred HHHHHHHhcCCCEEEEECCCh---HHHHHHHHHHHHcCCCEEEEeCCC-------------cccc----cCcccCCccc-
Confidence 999999888999999875442 245678999999999999998653 1111 1221110000
Q ss_pred HHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 210 AIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 210 ~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.. ..+ |.+|. ...+...++++++++.+++||++++||++++++.+++..|||+|.|||+++.
T Consensus 214 --~~-~~~--------g~~g~--~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~ 275 (311)
T 1ep3_A 214 --AN-ITG--------GLSGP--AIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA 275 (311)
T ss_dssp --TT-SCE--------EEESG--GGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH
T ss_pred --cC-CCC--------cccCc--cchHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHc
Confidence 00 000 12232 1112234789999998899999999999999999999999999999999987
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=107.86 Aligned_cols=172 Identities=17% Similarity=0.261 Sum_probs=112.9
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~f 159 (311)
+.++.+.+.+.|++-+++-. |-.|| ++.++++|+. ...|+.+++..+ ..++
T Consensus 16 ~a~~~~~~~~~dlvl~D~~~--p~~~g--------------------~~~~~~l~~~~~~~~i~vi~~~~------~~~~ 67 (237)
T 3cwo_X 16 EAVEKYKELKPDIVTMDITM--PEMNG--------------------IDAIKEIMKIDPNAKIIVCSAMG------QQAM 67 (237)
T ss_dssp TTHHHHHHHCCSCEEEECCS--TTSSH--------------------HHHHHHHHHHSSSCCEEEECCSS------THHH
T ss_pred HHHHHHHhcCCCEEEEeCCC--CCCCH--------------------HHHHHHHHHhCCCCCEEEEECCC------CHHH
Confidence 44555666789988887533 44555 2344444432 223343433322 2567
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-eCC-------------------CChHHHHHHHHHhCCceE
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-TTP-------------------TTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-isp-------------------~t~~eri~~i~~~a~gfi 219 (311)
...+.+.|+++++..+.|++....+....+.++...+.+ +.. .+..++++++.....+++
T Consensus 68 ~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~~~~~~~~d~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~~~~~~~~v 147 (237)
T 3cwo_X 68 VIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEI 147 (237)
T ss_dssp HHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHTGGGEEEEEEEEESSSCEEEEETTTTEEEEEEHHHHHHHHHHHTCSEE
T ss_pred HHHHHHCCHHheEeCCcccChHHHHHHHHHHhCCCceEEEeeecccCCcEEEEEeCCccccccCHHHHHHHHhhcCCCeE
Confidence 888999999999987544443232333333444332221 111 244577777777778888
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|+.+. +.+|...+.. .+.++++++..++|+++.+|+++++++.++++.||||+++||++..
T Consensus 148 li~~~-~~~g~~~g~~---~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~ 208 (237)
T 3cwo_X 148 LLTSI-DRDGTKSGYD---TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 208 (237)
T ss_dssp EEEET-TTTTCCSCCC---HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred EEEec-CCCCcccccc---HHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHc
Confidence 87654 4566655544 4679999988899999999999999999999999999999999965
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=115.11 Aligned_cols=180 Identities=18% Similarity=0.183 Sum_probs=123.3
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCC-EEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSD-IIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD-~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
..++.=+ +-.+.+.+.+.++.+.++|+| +||+.+ +.|..+| .++ .|.+.+.+.++++++|+.+++|
T Consensus 94 ~p~~~~i--~g~~~~~~~~~a~~~~~~g~d~~iein~--~~P~~~g-------~~~--~g~~~e~~~~iv~~vr~~~~~P 160 (311)
T 1jub_A 94 GPIFFSI--AGMSAAENIAMLKKIQESDFSGITELNL--SCPNVPG-------EPQ--LAYDFEATEKLLKEVFTFFTKP 160 (311)
T ss_dssp SCCEEEE--CCSSHHHHHHHHHHHHHSCCCSEEEEES--CCCCSSS-------CCC--GGGCHHHHHHHHHHHTTTCCSC
T ss_pred CCEEEEc--CCCCHHHHHHHHHHHHhcCCCeEEEEec--cCCCCCC-------ccc--ccCCHHHHHHHHHHHHHhcCCC
Confidence 3444433 245779999999999999999 999984 6776644 112 2456777889999999988999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+++..+.|. ......++++.+.++|+|++++++.... |+ .+.+.+. +. ....+.++
T Consensus 161 v~vKi~~~~-~~~~~~~~a~~~~~~G~d~i~v~~~~~~------------g~----~i~~~~~--~~--~~~~~~~~--- 216 (311)
T 1jub_A 161 LGVKLPPYF-DLVHFDIMAEILNQFPLTYVNSVNSIGN------------GL----FIDPEAE--SV--VIKPKDGF--- 216 (311)
T ss_dssp EEEEECCCC-SHHHHHHHHHHHTTSCCCEEEECCCEEE------------EE----CEETTTT--EE--SCSGGGGE---
T ss_pred EEEEECCCC-CHHHHHHHHHHHHHcCCcEEEecCCCCc------------Cc----eeccCCC--Cc--ccccCCCC---
Confidence 999876552 2223456788889999999999875321 00 0111100 00 00000011
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.|.+|.. ..+...++++++++.+ ++||+..+||++++++.+++..|||+|.|||+++.
T Consensus 217 ---gG~sg~~--~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 217 ---GGIGGAY--IKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp ---EEEESGG--GHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred ---Ccccccc--ccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 1233421 2223357899999988 89999999999999999999999999999999996
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.5e-11 Score=107.82 Aligned_cols=202 Identities=12% Similarity=0.128 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|+.+.+.+.+ ..+++-+..-+| ++..+++++|.++|++.||+ ++++| +
T Consensus 24 m~~~~~~l~~------~~vv~Vir~~~~--~~a~~~a~al~~gGi~~iEv--t~~t~--~-------------------- 71 (232)
T 4e38_A 24 MSTINNQLKA------LKVIPVIAIDNA--EDIIPLGKVLAENGLPAAEI--TFRSD--A-------------------- 71 (232)
T ss_dssp HHHHHHHHHH------HCEEEEECCSSG--GGHHHHHHHHHHTTCCEEEE--ETTST--T--------------------
T ss_pred HHHHHHHHHh------CCEEEEEEcCCH--HHHHHHHHHHHHCCCCEEEE--eCCCC--C--------------------
Confidence 6655555553 348888876666 78999999999999999999 55555 1
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
.++.++++++++.-.++.-+ ++.. .+-++.+.++|++.++.|.+.. ++.+.|+++|+..++-+. |+.|
T Consensus 72 a~e~I~~l~~~~~~~~iGaG---TVlt---~~~a~~Ai~AGA~fIvsP~~~~----~vi~~~~~~gi~~ipGv~--TptE 139 (232)
T 4e38_A 72 AVEAIRLLRQAQPEMLIGAG---TILN---GEQALAAKEAGATFVVSPGFNP----NTVRACQEIGIDIVPGVN--NPST 139 (232)
T ss_dssp HHHHHHHHHHHCTTCEEEEE---CCCS---HHHHHHHHHHTCSEEECSSCCH----HHHHHHHHHTCEEECEEC--SHHH
T ss_pred HHHHHHHHHHhCCCCEEeEC---CcCC---HHHHHHHHHcCCCEEEeCCCCH----HHHHHHHHcCCCEEcCCC--CHHH
Confidence 13577777776533333322 2332 5678999999999999997643 356678889998887765 5555
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
-.+. ...|+.|+-. +. ++ .. .-.++++.++... ++|++.-+||+ ++++.+.+++|++++++||.+++.
T Consensus 140 i~~A---~~~Gad~vK~-FP-a~---~~--gG~~~lkal~~p~p~ip~~ptGGI~-~~n~~~~l~aGa~~~vgGs~l~~~ 208 (232)
T 4e38_A 140 VEAA---LEMGLTTLKF-FP-AE---AS--GGISMVKSLVGPYGDIRLMPTGGIT-PSNIDNYLAIPQVLACGGTWMVDK 208 (232)
T ss_dssp HHHH---HHTTCCEEEE-CS-TT---TT--THHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHTSTTBCCEEECGGGCH
T ss_pred HHHH---HHcCCCEEEE-Cc-Cc---cc--cCHHHHHHHHHHhcCCCeeeEcCCC-HHHHHHHHHCCCeEEEECchhcCh
Confidence 4433 3356666531 11 11 01 1237899999875 79999999996 899999999999999999999864
Q ss_pred hh-hcCCchhHHHHHHHHHHHHH
Q 021527 286 LG-EAQSPEEGLKELEKFAKSLK 307 (311)
Q Consensus 286 ~~-~~~~~~~~~~~~~~~~~~l~ 307 (311)
-. +.++ .+++.+.++++.
T Consensus 209 ~~i~~~~----~~~i~~~a~~~~ 227 (232)
T 4e38_A 209 KLVTNGE----WDEIARLTREIV 227 (232)
T ss_dssp HHHHTTC----HHHHHHHHHHHH
T ss_pred HHhhcCC----HHHHHHHHHHHH
Confidence 21 2223 344555555443
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=109.57 Aligned_cols=186 Identities=13% Similarity=0.052 Sum_probs=125.1
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEec
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTY 147 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y 147 (311)
+-+.+|++++..+.++.+. ..++++++|.|+ + +..| .+.++++|+.. +.++.+..-
T Consensus 10 vAlD~~~~~~a~~~~~~~~-~~~~~ikvg~~l--------f--------~~~G------~~~v~~l~~~~p~~~iflDlK 66 (221)
T 3exr_A 10 VALDHSNLKGAITAAVSVG-NEVDVIEAGTVC--------L--------LQVG------SELVEVLRSLFPDKIIVADTK 66 (221)
T ss_dssp EEECCSSHHHHHHHHHHHG-GGCSEEEECHHH--------H--------HHHC------THHHHHHHHHCTTSEEEEEEE
T ss_pred EEeCCCCHHHHHHHHHhhC-CCceEEEECHHH--------H--------HhcC------HHHHHHHHHhCCCCcEEEEEE
Confidence 5667899999999999875 459999998433 2 2234 34677887754 667777653
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcC---CCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNK---IELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~g---i~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+..+ .+.+.+.+.++|+|.+.++-..-.+ ....++.++++| ......+.+.++.++++.+.+ .++.|++-
T Consensus 67 l~Di----p~t~~~~~~~~Gad~vtVH~~~g~~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~~~~~--~~~~~~v~ 140 (221)
T 3exr_A 67 CADA----GGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLD--AGISQAIY 140 (221)
T ss_dssp ECSC----HHHHHHHHHTTTCSEEEEETTSCHHHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHHHHHH--TTCCEEEE
T ss_pred eecc----HHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHHHHHc--CCHHHHHH
Confidence 3322 3445667899999999998654333 667788888877 322333445557788766644 35556554
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..+..+...+...+. +.++.+|+.. +.++.|.+||+ +++++++.++|||.+||||+|.+.
T Consensus 141 ~~a~~~~~~Gvv~s~-~e~~~ir~~~~~~~~i~v~gGI~-~~~~~~~~~aGad~~VvG~~I~~a 202 (221)
T 3exr_A 141 HQSRDALLAGETWGE-KDLNKVKKLIEMGFRVSVTGGLS-VDTLKLFEGVDVFTFIAGRGITEA 202 (221)
T ss_dssp ECCHHHHHHTCCCCH-HHHHHHHHHHHHTCEEEEESSCC-GGGGGGGTTCCCSEEEECHHHHTS
T ss_pred HHHHhcCCCccccCH-HHHHHHHHhhcCCceEEEECCCC-HHHHHHHHHCCCCEEEECchhhCC
Confidence 444322222222222 3466777654 67889999996 799999999999999999999973
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-11 Score=105.09 Aligned_cols=174 Identities=16% Similarity=0.210 Sum_probs=105.1
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIAL 144 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiil 144 (311)
..|++.....+.+ +.++.+.++|+|++++..+. .+.++..++++.+++.. ..++++
T Consensus 20 ~~It~~~~~~~~l-~~~~~~~~~G~~~v~lr~~~---------------------~~~~~~~~~~~~l~~~~~~~~~l~v 77 (221)
T 1yad_A 20 HAITDDSKPVEEL-ARIIITIQNEVDFIHIRERS---------------------KSAADILKLLDLIFEGGIDKRKLVM 77 (221)
T ss_dssp EEECCSCSCHHHH-HHHHHHHGGGCSEEEECCTT---------------------SCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred EEEECCCcCcchH-HHHHHHHHCCCCEEEEccCC---------------------CCHHHHHHHHHHHHHhcCcCCeEEE
Confidence 3456666666655 44788889999999996332 22334455666666531 113443
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEecC--CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVPD--VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviipD--lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
| +.++.+.++|+|+|.++. .+.++.. +. .. |+ +..++..+.++ ..+..+..-.++.+.
T Consensus 78 ----~--------~~~~~a~~~gad~v~l~~~~~~~~~~~---~~-~~-~~--~ig~sv~t~~~-~~~a~~~gaD~i~~~ 137 (221)
T 1yad_A 78 ----N--------GRVDIALFSTIHRVQLPSGSFSPKQIR---AR-FP-HL--HIGRSVHSLEE-AVQAEKEDADYVLFG 137 (221)
T ss_dssp ----E--------SCHHHHHTTTCCEEEECTTSCCHHHHH---HH-CT-TC--EEEEEECSHHH-HHHHHHTTCSEEEEE
T ss_pred ----e--------ChHHHHHHcCCCEEEeCCCccCHHHHH---HH-CC-CC--EEEEEcCCHHH-HHHHHhCCCCEEEEC
Confidence 2 245778899999999974 3333332 22 12 43 33445455544 333333333343333
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+..+ |....+.++...+.++++++..++|+++.+|| +++++.++.+.|||||+|||++.+
T Consensus 138 ~~f~-~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~ 197 (221)
T 1yad_A 138 HVFE-TDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAVMSGIFS 197 (221)
T ss_dssp CCC-----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEESHHHHT
T ss_pred Cccc-cCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhHHhhC
Confidence 3322 22221212233477888887779999999999 699999999999999999999987
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-11 Score=117.51 Aligned_cols=186 Identities=15% Similarity=0.145 Sum_probs=123.0
Q ss_pred CEEEEcCC-CCCCCCChHHHHHHHHHHHHcCC-------CHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHH
Q 021527 92 DIIELGVP-YSDPLADGPVIQAAATRSLARGT-------NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTV 163 (311)
Q Consensus 92 D~IElG~P-fsDP~aDGp~Iq~a~~~Al~~G~-------~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~ 163 (311)
+.+++.+| ++.|+..+...+-|...|.+.|. +.++.++.++++++..+.|+.+....|+ .++++.+
T Consensus 40 ~~~~l~~Pii~apM~~vt~~~lA~avA~~GGlgii~~~~s~e~~~~~I~~vk~~~~~pvga~ig~~~------~e~a~~l 113 (361)
T 3khj_A 40 KNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVLKVKNSGGLRVGAAIGVNE------IERAKLL 113 (361)
T ss_dssp SSCEESSSEEECSSTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHHTTCCCCEEEECTTC------HHHHHHH
T ss_pred cccccCCCEEeecCCCCCcHHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHHhccCceEEEEeCCCH------HHHHHHH
Confidence 46788888 68888877666666656666775 7888899999999888899888876553 6789999
Q ss_pred HHcCCcEEEecCCCh---hhHHHHHHHHHH-cCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecC-C-ccCCC--CCCC
Q 021527 164 RDIGIRGLVVPDVPL---EETESLQKEAMK-NKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSI-G-VTGAR--ASIS 235 (311)
Q Consensus 164 ~~aGadGviipDlp~---ee~~~~~~~~~~-~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~-G-~TG~~--~~~~ 235 (311)
.++|+|.+++ |... +...+..+.+++ +++.++.- ...+ .+..+.+.+..-.+|.+ ... | ..+.+ .+..
T Consensus 114 ~eaGad~I~l-d~a~G~~~~~~~~i~~i~~~~~~~Vivg-~v~t-~e~A~~l~~aGaD~I~V-G~~~Gs~~~tr~~~g~g 189 (361)
T 3khj_A 114 VEAGVDVIVL-DSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVT-EEATKELIENGADGIKV-GIGPGSICTTRIVAGVG 189 (361)
T ss_dssp HHTTCSEEEE-CCSCCSBHHHHHHHHHHHHHCCCEEEEE-EECS-HHHHHHHHHTTCSEEEE-CSSCCTTCCHHHHTCBC
T ss_pred HHcCcCeEEE-eCCCCCcHHHHHHHHHHHHhcCCcEEEc-cCCC-HHHHHHHHHcCcCEEEE-ecCCCcCCCcccccCCC
Confidence 9999998765 2222 233334444444 46655431 2234 45555555554455554 111 1 00000 0111
Q ss_pred chHHHHHHHHh---hcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 236 GHVQTLLREIK---ESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 236 ~~~~~~l~~vk---~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
....+.+.+++ +.+++||++.+||++++++.+++.+|||+|.+||+|...-+
T Consensus 190 ~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~E 244 (361)
T 3khj_A 190 VPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEE 244 (361)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTT
T ss_pred CCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCc
Confidence 11223455553 33589999999999999999999999999999999998764
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-12 Score=118.41 Aligned_cols=191 Identities=16% Similarity=0.161 Sum_probs=118.4
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc-CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG-VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG-~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
|..+|..+ +| .++++..+++|+|.|-+= ....|..+-| |+.-..-++.++++++.+++
T Consensus 21 kggv~~d~---~~-----~e~A~~ye~~GA~~lsvLe~~~~Di~~~~-------------g~~R~~~~~~i~~i~~~v~i 79 (297)
T 4adt_A 21 KGGVIMDV---KN-----VEQAKIAEKAGAIGVMILENIPSELRNTD-------------GVARSVDPLKIEEIRKCISI 79 (297)
T ss_dssp TTCEEEEE---SS-----HHHHHHHHHHTCSEEEECCCCC-----CC-------------CCCCCCCHHHHHHHHTTCCS
T ss_pred cCCcccCC---Cc-----HHHHHHHHHcCCCEEEEecCCCCcchhcC-------------CcccCCCHHHHHHHHHhcCC
Confidence 44577777 34 488999999999998762 1112322222 21001124699999999999
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCC-ChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV-PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl-p~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
|++... +.+..++++.+.++|||.|-.++. ++.+ +.+.+++++....+++..++.++..+.+ +....+|
T Consensus 80 Pvl~k~------~i~~ide~qil~aaGAD~Id~s~~~~~~~---li~~i~~~~~g~~vvv~v~~~~Ea~~a~-~~Gad~I 149 (297)
T 4adt_A 80 NVLAKV------RIGHFVEAQILEELKVDMLDESEVLTMAD---EYNHINKHKFKTPFVCGCTNLGEALRRI-SEGASMI 149 (297)
T ss_dssp EEEEEE------ETTCHHHHHHHHHTTCSEEEEETTSCCSC---SSCCCCGGGCSSCEEEEESSHHHHHHHH-HHTCSEE
T ss_pred CEEEec------cCCcHHHHHHHHHcCCCEEEcCCCCCHHH---HHHHHHhcCCCCeEEEEeCCHHHHHHHH-hCCCCEE
Confidence 998642 123356788888999999844432 3222 3344445333333344555655544333 3233333
Q ss_pred EEEecCCccCC-----------------------CC------CCCchHHHHHHHHhhcCCCcEE--EeeCCCCHHHHHHH
Q 021527 220 YLVSSIGVTGA-----------------------RA------SISGHVQTLLREIKESSTKPVA--VGFGISKPEHVQQV 268 (311)
Q Consensus 220 Y~vs~~G~TG~-----------------------~~------~~~~~~~~~l~~vk~~~~~Pv~--vGfGIst~e~v~~v 268 (311)
. +...+.||. +. .... ..++++++++..++|++ +.+||++++++.++
T Consensus 150 ~-v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~-~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~ 227 (297)
T 4adt_A 150 R-TKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRA-PIDLILLTRKLKRLPVVNFAAGGIATPADAAMC 227 (297)
T ss_dssp E-ECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTC-CHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHH
T ss_pred E-ECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCC-CHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHH
Confidence 3 223344662 00 0111 24678888888888986 89999999999999
Q ss_pred HHcCCcEEEEhhHhhch
Q 021527 269 AGWGADGVIVGSAMVKL 285 (311)
Q Consensus 269 ~~~GADGvIVGSaiv~~ 285 (311)
.++|||||+|||+|++.
T Consensus 228 ~~~GAdgVlVGsai~~a 244 (297)
T 4adt_A 228 MQLGMDGVFVGSGIFES 244 (297)
T ss_dssp HHTTCSCEEESHHHHTS
T ss_pred HHcCCCEEEEhHHHHcC
Confidence 99999999999999983
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-10 Score=110.25 Aligned_cols=153 Identities=13% Similarity=0.134 Sum_probs=105.9
Q ss_pred HHHHHHHHHhhccCCCcEEEEecCcch-hccCHHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCC
Q 021527 125 NAILSMLKEVVPQMSCPIALFTYYNPI-LKRGVDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPT 202 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~Y~n~i-~~~g~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~ 202 (311)
+++.+.++++++.++.|+.+..+.|+. .....+++++.+.+.|+|+|.++ +.| .++.+.++++|+..+..+ +
T Consensus 53 ~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~p----~~~~~~l~~~gi~vi~~v--~ 126 (328)
T 2gjl_A 53 EALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGNDP----GEHIAEFRRHGVKVIHKC--T 126 (328)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESCC----HHHHHHHHHTTCEEEEEE--S
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCCc----HHHHHHHHHcCCCEEeeC--C
Confidence 455667888887777888777666521 12345789999999999999886 455 345667778888766544 4
Q ss_pred ChHHHHHHHHHhCCceEEEEec-CC-ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSS-IG-VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~-~G-~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
+.++..+......++++ +... .| .+|.. .....+++.++++.+++||++++||++++++.+++..|||||.|||
T Consensus 127 t~~~a~~~~~~GaD~i~-v~g~~~GG~~G~~---~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~GAdgV~vGs 202 (328)
T 2gjl_A 127 AVRHALKAERLGVDAVS-IDGFECAGHPGED---DIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINMGT 202 (328)
T ss_dssp SHHHHHHHHHTTCSEEE-EECTTCSBCCCSS---CCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred CHHHHHHHHHcCCCEEE-EECCCCCcCCCCc---cccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 55444333222233333 3221 11 22321 1234578999998889999999999999999999999999999999
Q ss_pred Hhhchhh
Q 021527 281 AMVKLLG 287 (311)
Q Consensus 281 aiv~~~~ 287 (311)
+|+...+
T Consensus 203 ~~~~~~e 209 (328)
T 2gjl_A 203 RFLATRE 209 (328)
T ss_dssp HHHTSSS
T ss_pred HHHcCcc
Confidence 9998765
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-10 Score=109.85 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=123.1
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCC-CEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGS-DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~Ga-D~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
|++.++-+.. +..+.+.++.++|. ..+..+ + .+.+.+.+.++++++.++.|+.+.
T Consensus 14 Pii~apM~g~-s~~~la~av~~aG~lG~i~~~--~---------------------~~~~~~~~~i~~i~~~~~~p~gvn 69 (332)
T 2z6i_A 14 PIFQGGMAWV-ADGDLAGAVSKAGGLGIIGGG--N---------------------APKEVVKANIDKIKSLTDKPFGVN 69 (332)
T ss_dssp SEEECCCTTT-CCHHHHHHHHHHTSBEEEECT--T---------------------CCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CEEeCCCCCC-CcHHHHHHHHhCCCcEEeCCC--C---------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3555555543 33567777777775 677654 1 233444567777777677888776
Q ss_pred ecC-cchhccCHHHHHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 146 TYY-NPILKRGVDNFMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 146 ~Y~-n~i~~~g~~~fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
.+. |+ ..++.++.+.++|+|+|.++. .|.+ +.+.+++.|+.++.-+ ++ .+..+.+.+..-.++.+..
T Consensus 70 l~~~~~----~~~~~~~~a~~~g~d~V~~~~g~p~~----~i~~l~~~g~~v~~~v--~~-~~~a~~~~~~GaD~i~v~g 138 (332)
T 2z6i_A 70 IMLLSP----FVEDIVDLVIEEGVKVVTTGAGNPSK----YMERFHEAGIIVIPVV--PS-VALAKRMEKIGADAVIAEG 138 (332)
T ss_dssp ECTTST----THHHHHHHHHHTTCSEEEECSSCGGG----THHHHHHTTCEEEEEE--SS-HHHHHHHHHTTCSCEEEEC
T ss_pred ecCCCC----CHHHHHHHHHHCCCCEEEECCCChHH----HHHHHHHcCCeEEEEe--CC-HHHHHHHHHcCCCEEEEEC
Confidence 544 43 346788999999999999974 4432 4455566787766544 33 3445555554445555543
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
. .+|...+. ....++++++++.+++||++.+||++++++.+++..|||||.|||+|+...+
T Consensus 139 ~--~~GG~~g~-~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e 199 (332)
T 2z6i_A 139 M--EAGGHIGK-LTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKE 199 (332)
T ss_dssp T--TSSEECCS-SCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTT
T ss_pred C--CCCCCCCC-ccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCcc
Confidence 2 12322221 2234789999988899999999999999999999999999999999998654
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=115.27 Aligned_cols=189 Identities=23% Similarity=0.273 Sum_probs=116.8
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEE-EEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDII-ELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~I-ElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
+..+|..+ +| .+.++.+.++|+|.| ++. |. |.+.. ...|......++.++++++.+++
T Consensus 21 ~~g~i~~~---~~-----~~~a~~~~~~Ga~~I~~l~-p~-------~~~~~-----~~~G~~~~~~~~~i~~I~~~~~i 79 (305)
T 2nv1_A 21 KGGVIMDV---IN-----AEQAKIAEEAGAVAVMALE-RV-------PADIR-----AAGGVARMADPTIVEEVMNAVSI 79 (305)
T ss_dssp TTCEEEEE---SS-----HHHHHHHHHTTCSEEEECC-C-------------------CCCCCCCCCHHHHHHHHHHCSS
T ss_pred cCCeeecC---CH-----HHHHHHHHHcCCCEEEEcC-CC-------cchhh-----hccCcccCCCHHHHHHHHHhCCC
Confidence 34465544 56 689999999999999 564 32 22211 12332111124577788878899
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
|+++-... |..++++.+.++|+|+|+..+ +++++..++.+ ++++|+..+ +...+..+..+.+ + .|..
T Consensus 80 Pv~~k~r~------g~~~~~~~~~a~GAd~V~~~~~l~~~~~~~~i~-~~~~g~~v~--~~~~~~~e~~~a~-~--~Gad 147 (305)
T 2nv1_A 80 PVMAKARI------GHIVEARVLEAMGVDYIDESEVLTPADEEFHLN-KNEYTVPFV--CGCRDLGEATRRI-A--EGAS 147 (305)
T ss_dssp CEEEEECT------TCHHHHHHHHHHTCSEEEECTTSCCSCSSCCCC-GGGCSSCEE--EEESSHHHHHHHH-H--TTCS
T ss_pred CEEecccc------cchHHHHHHHHCCCCEEEEeccCCHHHHHHHHH-HhccCCcEE--EEeCCHHHHHHHH-H--CCCC
Confidence 98763221 224678888889999998543 44444333333 345676544 3445655655443 3 3433
Q ss_pred EEEecCCccCC------------------------CCCC------CchHHHHHHHHhhcCCCcEE--EeeCCCCHHHHHH
Q 021527 220 YLVSSIGVTGA------------------------RASI------SGHVQTLLREIKESSTKPVA--VGFGISKPEHVQQ 267 (311)
Q Consensus 220 Y~vs~~G~TG~------------------------~~~~------~~~~~~~l~~vk~~~~~Pv~--vGfGIst~e~v~~ 267 (311)
|+.. .|-+|. +... .+...++++++++..++||+ +.+||++++++.+
T Consensus 148 ~V~~-~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~ 226 (305)
T 2nv1_A 148 MLRT-KGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAAL 226 (305)
T ss_dssp EEEE-CCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHH
T ss_pred EEEe-ccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHH
Confidence 4422 121110 0000 11124678888887889998 9999999999999
Q ss_pred HHHcCCcEEEEhhHhhc
Q 021527 268 VAGWGADGVIVGSAMVK 284 (311)
Q Consensus 268 v~~~GADGvIVGSaiv~ 284 (311)
+.+.|||||+|||++++
T Consensus 227 ~~~~GadgV~vGsai~~ 243 (305)
T 2nv1_A 227 MMQLGADGVFVGSGIFK 243 (305)
T ss_dssp HHHTTCSCEEECGGGGG
T ss_pred HHHcCCCEEEEcHHHHc
Confidence 99999999999999997
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=103.68 Aligned_cols=170 Identities=19% Similarity=0.139 Sum_probs=118.2
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
.+++-+..- +.++..+.++++.++|+++||+. +++| +..+.++++++ .++.+.
T Consensus 14 ~ii~vi~~~--~~~~~~~~~~~l~~gGv~~iel~--~k~~----------------------~~~~~i~~~~~-~~~~~g 66 (207)
T 2yw3_A 14 RLLPLLTVR--GGEDLLGLARVLEEEGVGALEIT--LRTE----------------------KGLEALKALRK-SGLLLG 66 (207)
T ss_dssp CEEEEECCC--SCCCHHHHHHHHHHTTCCEEEEE--CSST----------------------HHHHHHHHHTT-SSCEEE
T ss_pred CEEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEe--CCCh----------------------HHHHHHHHHhC-CCCEEE
Confidence 466655443 44678999999999999999997 3332 11346666666 444443
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
.-+ +. ..+.++.+.++|+|+++.|... .++.+.++++|+..++-+ .|+.+. .+.. ..|..|+.-
T Consensus 67 ag~----vl---~~d~~~~A~~~GAd~v~~~~~d----~~v~~~~~~~g~~~i~G~--~t~~e~-~~A~--~~Gad~v~~ 130 (207)
T 2yw3_A 67 AGT----VR---SPKEAEAALEAGAAFLVSPGLL----EEVAALAQARGVPYLPGV--LTPTEV-ERAL--ALGLSALKF 130 (207)
T ss_dssp EES----CC---SHHHHHHHHHHTCSEEEESSCC----HHHHHHHHHHTCCEEEEE--CSHHHH-HHHH--HTTCCEEEE
T ss_pred eCe----Ee---eHHHHHHHHHcCCCEEEcCCCC----HHHHHHHHHhCCCEEecC--CCHHHH-HHHH--HCCCCEEEE
Confidence 322 22 2477899999999999998654 235566778898877764 344443 3332 347777632
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+. . . ...-.++++.+++.. ++|++.-+||+ ++|+.++++.||||++|||++++
T Consensus 131 -fp---a--~-~~gG~~~lk~l~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 131 -FP---A--E-PFQGVRVLRAYAEVFPEVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp -TT---T--T-TTTHHHHHHHHHHHCTTCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGS
T ss_pred -ec---C--c-cccCHHHHHHHHhhCCCCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhC
Confidence 22 1 0 110236788998877 89999999997 79999999999999999999998
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-10 Score=103.54 Aligned_cols=185 Identities=14% Similarity=0.095 Sum_probs=119.9
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEe
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFT 146 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~ 146 (311)
.+.+..+++++..+.++.+.+ .++++++|. |-+ +..| .+.++.+|+.. +.++++..
T Consensus 7 ilalD~~~~~~~~~~~~~~~~-~v~~~kv~~--------~~f--------~~~G------~~~i~~l~~~~p~~~v~lD~ 63 (216)
T 1q6o_A 7 QVALDNQTMDSAYETTRLIAE-EVDIIEVGT--------ILC--------VGEG------VRAVRDLKALYPHKIVLADA 63 (216)
T ss_dssp EEEECCSSHHHHHHHHHHHGG-GCSEEEECH--------HHH--------HHHC------THHHHHHHHHCTTSEEEEEE
T ss_pred EEEECCCCHHHHHHHHHHhcc-cCCEEEECH--------HHH--------HHhC------HHHHHHHHHhCCCCeEEEEE
Confidence 356677899999999988864 589999983 322 1223 34677777653 46666655
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEE-EeCCCChHHHHHHHHHhCCceEEEEec
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVL-FTTPTTPTDRMKAIVEASEGFVYLVSS 224 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~-lisp~t~~eri~~i~~~a~gfiY~vs~ 224 (311)
.... ..+.+++.+.++|+|.+.++-..-.+ ..++.+.++++|..... +++.-+ ..+.+.+... +..|++..
T Consensus 64 kl~d----ip~t~~~~~~~~Gad~itvh~~~g~~~l~~~~~~~~~~g~~~~~~ll~~~t-~~~~~~l~~~--~~~~~vl~ 136 (216)
T 1q6o_A 64 KIAD----AGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWT-WEQAQQWRDA--GIGQVVYH 136 (216)
T ss_dssp EECS----CHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCC-HHHHHHHHHT--TCCEEEEE
T ss_pred Eecc----cHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCceeeeeeCCC-hhhHHHHHhc--CcHHHHHH
Confidence 4332 24567778899999999997544344 66788889999987533 341322 2333444332 45555431
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 225 IGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+......+... ..+.++++|+.. +.|+++.+||+ ++++.++.++|||++||||++.+
T Consensus 137 ~a~~~~~~G~~g-~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~~aGad~ivvG~~I~~ 196 (216)
T 1q6o_A 137 RSRDAQAAGVAW-GEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRD 196 (216)
T ss_dssp CCHHHHHTTCCC-CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHHT
T ss_pred HHHHHHhcCCCC-CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHHHcCCCEEEEeehhcC
Confidence 111100011111 124567777654 67899999998 89999999999999999999997
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-10 Score=101.86 Aligned_cols=188 Identities=19% Similarity=0.218 Sum_probs=121.0
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCc
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCP 141 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iP 141 (311)
.+++-+..- +.+...+.++.+.++|+|+||+.+.. | ++ .+.++++|+.+ +.+
T Consensus 11 ~~i~~~~~~--~~~~~~~~~~~~~~~G~~~iev~~~~--~--~~--------------------~~~i~~ir~~~~~~~~ 64 (205)
T 1wa3_A 11 KIVAVLRAN--SVEEAKEKALAVFEGGVHLIEITFTV--P--DA--------------------DTVIKELSFLKEKGAI 64 (205)
T ss_dssp CEEEEECCS--SHHHHHHHHHHHHHTTCCEEEEETTS--T--TH--------------------HHHHHHTHHHHHTTCE
T ss_pred CEEEEEecC--CHHHHHHHHHHHHHCCCCEEEEeCCC--h--hH--------------------HHHHHHHHHHCCCCcE
Confidence 466666544 45789999999999999999996432 2 11 23556666543 345
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+.+-+-.| .+ -++.+.++|+|.++-|.++ .++.+.++++|+..+.-+ .|+.+ +.+..+ .|+.++
T Consensus 65 ig~~~v~~------~~-~~~~a~~~Gad~iv~~~~~----~~~~~~~~~~g~~vi~g~--~t~~e-~~~a~~--~Gad~v 128 (205)
T 1wa3_A 65 IGAGTVTS------VE-QCRKAVESGAEFIVSPHLD----EEISQFCKEKGVFYMPGV--MTPTE-LVKAMK--LGHTIL 128 (205)
T ss_dssp EEEESCCS------HH-HHHHHHHHTCSEEECSSCC----HHHHHHHHHHTCEEECEE--CSHHH-HHHHHH--TTCCEE
T ss_pred EEecccCC------HH-HHHHHHHcCCCEEEcCCCC----HHHHHHHHHcCCcEECCc--CCHHH-HHHHHH--cCCCEE
Confidence 55422222 23 3677888999999556554 246677888998877644 24433 333333 444443
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELE 300 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~ 300 (311)
... . . ...-.+.++++++.. ++|+++.+||+ ++++.++++.|||+|+|||++.+ . ++.+..+.++
T Consensus 129 k~~-~---~----~~~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~--~---d~~~~~~~~~ 194 (205)
T 1wa3_A 129 KLF-P---G----EVVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK--G---TPDEVREKAK 194 (205)
T ss_dssp EET-T---H----HHHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC--S---CHHHHHHHHH
T ss_pred EEc-C---c----cccCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC--C---CHHHHHHHHH
Confidence 211 0 0 011236788888877 89999999997 79999999999999999999998 2 3333334445
Q ss_pred HHHHHHH
Q 021527 301 KFAKSLK 307 (311)
Q Consensus 301 ~~~~~l~ 307 (311)
+|.+.++
T Consensus 195 ~~~~~~~ 201 (205)
T 1wa3_A 195 AFVEKIR 201 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-10 Score=111.88 Aligned_cols=187 Identities=18% Similarity=0.185 Sum_probs=121.3
Q ss_pred CEEEEcCC-CCCCCCChHHHHHHHHHHHHcC-------CCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHH
Q 021527 92 DIIELGVP-YSDPLADGPVIQAAATRSLARG-------TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTV 163 (311)
Q Consensus 92 D~IElG~P-fsDP~aDGp~Iq~a~~~Al~~G-------~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~ 163 (311)
+.+++.+| ++.|+......+-|...|.+.| .+.++..+.++++|+....++.+...+++- ..+.++.+
T Consensus 41 ~~~~l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~~~s~e~~~~~i~~vk~~~~l~vga~vg~~~~----~~~~~~~l 116 (366)
T 4fo4_A 41 KNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMSIEQQAAQVHQVKISGGLRVGAAVGAAPG----NEERVKAL 116 (366)
T ss_dssp TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHTTTSCCCEEECCSCTT----CHHHHHHH
T ss_pred cccccCCCEEeCCCCCCChHHHHHHHHHcCCceEeecCCCHHHHHHHHHHHHhcCceeEEEEeccChh----HHHHHHHH
Confidence 45788888 5888876555555555566666 578888899999987655667776555532 36789999
Q ss_pred HHcCCcEEEe--cCCChhhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCC----C--CC
Q 021527 164 RDIGIRGLVV--PDVPLEETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA----R--AS 233 (311)
Q Consensus 164 ~~aGadGvii--pDlp~ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~----~--~~ 233 (311)
.++|+|.|++ ..-..++..+..+.+++. ++.++.- +-.| .+..+.+.+..-.++.+ ..| -|+ + ..
T Consensus 117 ieaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G-~v~t-~e~A~~a~~aGAD~I~v--G~g-pGs~~~tr~~~g 191 (366)
T 4fo4_A 117 VEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGG-NVAT-AEGARALIEAGVSAVKV--GIG-PGSICTTRIVTG 191 (366)
T ss_dssp HHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEE-EECS-HHHHHHHHHHTCSEEEE--CSS-CSTTBCHHHHHC
T ss_pred HhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEee-eeCC-HHHHHHHHHcCCCEEEE--ecC-CCCCCCcccccC
Confidence 9999999876 222334555555556555 5443321 2234 34455554544444443 111 111 1 01
Q ss_pred CCchHHHHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 234 ISGHVQTLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 234 ~~~~~~~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
......+.+.++++ ..++||++.+||++++++.+++.+|||+|.+||+|...-+
T Consensus 192 ~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~E 248 (366)
T 4fo4_A 192 VGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEE 248 (366)
T ss_dssp CCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred cccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCC
Confidence 11112344555543 4689999999999999999999999999999999998664
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=113.28 Aligned_cols=180 Identities=17% Similarity=0.162 Sum_probs=123.2
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCC---EEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSD---IIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD---~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
..++.=+ +-++.+.+.+.++.+.++|+| +||+.+ +.|...| .++ .|.+.+.+.++++++|+.++
T Consensus 94 ~p~~~~i--~g~~~~~~~~~a~~~~~~g~d~~~~iein~--~~P~~~g-------~~~--~g~~~~~~~~ii~~vr~~~~ 160 (314)
T 2e6f_A 94 KPLFLSI--SGLSVEENVAMVRRLAPVAQEKGVLLELNL--SCPNVPG-------KPQ--VAYDFEAMRTYLQQVSLAYG 160 (314)
T ss_dssp CCEEEEE--CCSSHHHHHHHHHHHHHHHHHHCCEEEEEC--CCCCSTT-------CCC--GGGSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEe--CCCCHHHHHHHHHHHHHhCCCcCceEEEEc--CCCCCCC-------chh--hcCCHHHHHHHHHHHHHhcC
Confidence 3444444 346779999999999999999 999984 6777644 111 24567778889999998889
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcC-CcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIG-IRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aG-adGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
+|+++..+.|. ......++++.+.++| +|++++++.... ++ .+.+.+. +. .+ .....+
T Consensus 161 ~Pv~vK~~~~~-~~~~~~~~a~~~~~aG~~d~i~v~~~~~~------------~~----~i~~~~~--~~-~~-~~~~~~ 219 (314)
T 2e6f_A 161 LPFGVKMPPYF-DIAHFDTAAAVLNEFPLVKFVTCVNSVGN------------GL----VIDAESE--SV-VI-KPKQGF 219 (314)
T ss_dssp SCEEEEECCCC-CHHHHHHHHHHHHTCTTEEEEEECCCEEE------------EE----CEETTTT--EE-SC-CGGGGE
T ss_pred CCEEEEECCCC-CHHHHHHHHHHHHhcCCceEEEEeCCCCc------------cc----cccCCCC--Cc-cc-ccCcCC
Confidence 99999876552 2223456788889999 999999875421 00 0111100 00 00 000011
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.|.+|. ...+...++++++|+.+ ++||++.+||+|++++.+++..|||+|.|||+++.
T Consensus 220 ------gG~sg~--~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~ 278 (314)
T 2e6f_A 220 ------GGLGGK--YILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQE 278 (314)
T ss_dssp ------EEEESG--GGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHH
T ss_pred ------CccCcc--cccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHh
Confidence 123342 12223357899999988 99999999999999999999999999999999996
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-10 Score=115.30 Aligned_cols=177 Identities=16% Similarity=0.190 Sum_probs=114.8
Q ss_pred EEEeCCC---CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 67 PYITAGD---PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 67 ~yi~~G~---P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
.|+..+. |+...+.+.++.+.++|+++|++= ++-.+..... +..+.++++.++.++|++
T Consensus 12 lYlITd~~~~~~~~~l~~~ve~al~~Gv~~vQlR----~K~~~~~~~~--------------~~a~~l~~l~~~~~v~li 73 (540)
T 3nl6_A 12 LYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIR----EKDADTKFFI--------------EEALQIKELCHAHNVPLI 73 (540)
T ss_dssp EEEEC-CTTCCTTCCHHHHHHHHHHTTCSEEEEC----CSSSCTTHHH--------------HHHHHHHHHHHHTTCCEE
T ss_pred EEEEECchhccCcchHHHHHHHHHHCCCCEEEEe----cCCCCHHHHH--------------HHHHHHHHHHHhcCCEEE
Confidence 4664443 334578999999999999999994 4433321111 112344455566889999
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc---e
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG---F 218 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g---f 218 (311)
+. ++++.+.+.|+|||+++ |+|..+.+++ .|-+.++.++-++.++- .+..+ .| .
T Consensus 74 IN------------D~~dlA~~~gAdGVHLgq~dl~~~~ar~~------lg~~~iiG~S~ht~eea-~~A~~--~G~~~a 132 (540)
T 3nl6_A 74 IN------------DRIDVAMAIGADGIHVGQDDMPIPMIRKL------VGPDMVIGWSVGFPEEV-DELSK--MGPDMV 132 (540)
T ss_dssp EC------------SCSHHHHHTTCSEEEECTTSSCHHHHHHH------HCTTSEEEEEECSHHHH-HHHHH--TCC--C
T ss_pred Ee------------CcHHHHHHcCCCEEEEChhhcCHHHHHHH------hCCCCEEEEECCCHHHH-HHHHH--cCCCCC
Confidence 93 24567788999999997 7776554432 24456667777776554 33323 45 6
Q ss_pred EEEE--ecCCccCCCCCC--CchHHHHHHHHhhc------CCCcEEEeeCCCCHHHHHHHHH--------cCCcEEEEhh
Q 021527 219 VYLV--SSIGVTGARASI--SGHVQTLLREIKES------STKPVAVGFGISKPEHVQQVAG--------WGADGVIVGS 280 (311)
Q Consensus 219 iY~v--s~~G~TG~~~~~--~~~~~~~l~~vk~~------~~~Pv~vGfGIst~e~v~~v~~--------~GADGvIVGS 280 (311)
.|+. +.+ .|.++.+. ++--.+.++++++. .++|+++=+||+ ++++.++++ .|||||.|+|
T Consensus 133 DYv~~Gpvf-~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~-~~ni~~v~~~~~~~g~~~GadgvAVvs 210 (540)
T 3nl6_A 133 DYIGVGTLF-PTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLH-PDNIERVLYQCVSSNGKRSLDGICVVS 210 (540)
T ss_dssp CEEEESCCS-CCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSCC-TTTHHHHHHHCBCTTSSCBCSCEEESH
T ss_pred CEEEEcCCC-CCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCCC-HHHHHHHHHhhcccccccCceEEEEeH
Confidence 7773 333 34444443 22223455555543 489999999995 799999997 8999999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+|.+
T Consensus 211 aI~~ 214 (540)
T 3nl6_A 211 DIIA 214 (540)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9996
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.8e-11 Score=112.66 Aligned_cols=166 Identities=18% Similarity=0.253 Sum_probs=109.4
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
..+++.|...+| +.+.+.++.+.++|+|.|||.. |+++...|| .-.+|. .+.+.+.++++.+++.+++
T Consensus 58 ~p~~vQL~g~~p--~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~------~G~~l~--~~~~~~~eiv~av~~~v~~ 127 (350)
T 3b0p_A 58 HPIALQLAGSDP--KSLAEAARIGEAFGYDEINLNLGCPSEKAQEGG------YGACLL--LDLARVREILKAMGEAVRV 127 (350)
T ss_dssp CSEEEEEECSCH--HHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTT------CGGGGG--GCHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEeCCCCH--HHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCC------cchhHH--hCHHHHHHHHHHHHHHhCC
Confidence 457777775454 8899999999999999999964 553332221 000111 2567788899999988899
Q ss_pred cEEE---EecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 141 PIAL---FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 141 Piil---m~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
||.+ +++.+........+|++.+.++|+|+|++.+-... .
T Consensus 128 PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~--------------------------~----------- 170 (350)
T 3b0p_A 128 PVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSAL--------------------------L----------- 170 (350)
T ss_dssp CEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC--------------------------------------
T ss_pred ceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchh--------------------------c-----------
Confidence 9988 34433211012345677777788888765431100 0
Q ss_pred eEEEEecCCccCCCC-CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARA-SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~-~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|.+|... ..++...++++++|+.+ ++||++++||+|++++.++++ |||+|.||++++.
T Consensus 171 --------g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~ 230 (350)
T 3b0p_A 171 --------ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYE 230 (350)
T ss_dssp -----------------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHH
T ss_pred --------ccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence 0111100 01111246789999988 899999999999999999998 9999999998764
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-09 Score=96.25 Aligned_cols=194 Identities=10% Similarity=0.107 Sum_probs=126.6
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
.+++-+-. .+.++..+.++++.++|++++|+. +.+| ++ .+.++++++++. .+.
T Consensus 18 ~ii~vir~--~~~~~~~~~~~al~~gGv~~iel~--~k~~--~~--------------------~~~i~~l~~~~~-~l~ 70 (224)
T 1vhc_A 18 KIVPVIAL--DNADDILPLADTLAKNGLSVAEIT--FRSE--AA--------------------ADAIRLLRANRP-DFL 70 (224)
T ss_dssp CEEEEECC--SSGGGHHHHHHHHHHTTCCEEEEE--TTST--TH--------------------HHHHHHHHHHCT-TCE
T ss_pred CeEEEEeC--CCHHHHHHHHHHHHHcCCCEEEEe--ccCc--hH--------------------HHHHHHHHHhCc-CcE
Confidence 46666654 345788999999999999999997 3332 11 245666665542 222
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+ ++ +.++ ..+-++.+.++|+|+++.|... .+..+.++++|...++-+ .|+.+ +.+. ...|..|+.-
T Consensus 71 v-ga-Gtvl---~~d~~~~A~~aGAd~v~~p~~d----~~v~~~ar~~g~~~i~Gv--~t~~e-~~~A--~~~Gad~vk~ 136 (224)
T 1vhc_A 71 I-AA-GTVL---TAEQVVLAKSSGADFVVTPGLN----PKIVKLCQDLNFPITPGV--NNPMA-IEIA--LEMGISAVKF 136 (224)
T ss_dssp E-EE-ESCC---SHHHHHHHHHHTCSEEECSSCC----HHHHHHHHHTTCCEECEE--CSHHH-HHHH--HHTTCCEEEE
T ss_pred E-ee-CcEe---eHHHHHHHHHCCCCEEEECCCC----HHHHHHHHHhCCCEEecc--CCHHH-HHHH--HHCCCCEEEE
Confidence 2 22 1232 2577889999999999988532 335567788999887764 34444 3333 2356667632
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhchhh-hcCCchhHHHHHH
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVKLLG-EAQSPEEGLKELE 300 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~~~~-~~~~~~~~~~~~~ 300 (311)
+. .. ...-.++++.+++.. ++|+++-+||+ ++|+.++++. |++++. ||+|++.-. +..++++-.+..+
T Consensus 137 -Fp--a~----~~gG~~~lk~l~~~~~~ipvvaiGGI~-~~N~~~~l~agga~~v~-gS~i~~~~~i~~~~~~~i~~~a~ 207 (224)
T 1vhc_A 137 -FP--AE----ASGGVKMIKALLGPYAQLQIMPTGGIG-LHNIRDYLAIPNIVACG-GSWFVEKKLIQSNNWDEIGRLVR 207 (224)
T ss_dssp -TT--TT----TTTHHHHHHHHHTTTTTCEEEEBSSCC-TTTHHHHHTSTTBCCEE-ECGGGCHHHHHTTCHHHHHHHHH
T ss_pred -ee--Cc----cccCHHHHHHHHhhCCCCeEEEECCcC-HHHHHHHHhcCCCEEEE-EchhcCcchhccCCHHHHHHHHH
Confidence 22 10 111247899999987 79999999996 7999999998 999999 999997432 2234444444445
Q ss_pred HHHHHHH
Q 021527 301 KFAKSLK 307 (311)
Q Consensus 301 ~~~~~l~ 307 (311)
+|++.++
T Consensus 208 ~~~~~~~ 214 (224)
T 1vhc_A 208 EVIDIIK 214 (224)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5555443
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-09 Score=95.34 Aligned_cols=189 Identities=13% Similarity=0.132 Sum_probs=125.0
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIA 143 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPii 143 (311)
+++-+.. .+.++..+.++++.++|++++|+. +.+| ...+.++++++++ ++-+.
T Consensus 28 ii~V~r~--~~~~~~~~~~~al~~gGv~~iel~--~k~~----------------------~~~~~i~~l~~~~~~~~ig 81 (225)
T 1mxs_A 28 ILPVITI--AREEDILPLADALAAGGIRTLEVT--LRSQ----------------------HGLKAIQVLREQRPELCVG 81 (225)
T ss_dssp EEEEECC--SCGGGHHHHHHHHHHTTCCEEEEE--SSST----------------------HHHHHHHHHHHHCTTSEEE
T ss_pred EEEEEeC--CCHHHHHHHHHHHHHCCCCEEEEe--cCCc----------------------cHHHHHHHHHHhCcccEEe
Confidence 6665543 356889999999999999999997 2322 1134566666554 33232
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
.- . +. ..+.++.+.++|+|+++.|... .+..+.++++|++.++-+ .|+.| +.+ ....|..|+.-
T Consensus 82 ag---t-vl---~~d~~~~A~~aGAd~v~~p~~d----~~v~~~~~~~g~~~i~G~--~t~~e-~~~--A~~~Gad~vk~ 145 (225)
T 1mxs_A 82 AG---T-VL---DRSMFAAVEAAGAQFVVTPGIT----EDILEAGVDSEIPLLPGI--STPSE-IMM--GYALGYRRFKL 145 (225)
T ss_dssp EE---C-CC---SHHHHHHHHHHTCSSEECSSCC----HHHHHHHHHCSSCEECEE--CSHHH-HHH--HHTTTCCEEEE
T ss_pred eC---e-Ee---eHHHHHHHHHCCCCEEEeCCCC----HHHHHHHHHhCCCEEEee--CCHHH-HHH--HHHCCCCEEEE
Confidence 22 1 22 2478899999999999988543 346677788999887753 45544 333 23567777732
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhh-hcCCchhHHHHHH
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVKLLG-EAQSPEEGLKELE 300 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~-~~~~~~~~~~~~~ 300 (311)
+. +. ...-.++++.+++.. ++|+++-+||+ ++|+.++++ .|+|+|. ||+|++.-. +.++ .+++.
T Consensus 146 -FP--a~----~~~G~~~lk~i~~~~~~ipvvaiGGI~-~~N~~~~l~~~Ga~~v~-gSai~~~~~i~~~~----~~~i~ 212 (225)
T 1mxs_A 146 -FP--AE----ISGGVAAIKAFGGPFGDIRFCPTGGVN-PANVRNYMALPNVMCVG-TTWMLDSSWIKNGD----WARIE 212 (225)
T ss_dssp -TT--HH----HHTHHHHHHHHHTTTTTCEEEEBSSCC-TTTHHHHHHSTTBCCEE-ECTTSCHHHHHTTC----HHHHH
T ss_pred -cc--Cc----cccCHHHHHHHHhhCCCCeEEEECCCC-HHHHHHHHhccCCEEEE-EchhcCchhhccCC----HHHHH
Confidence 21 00 000147899999887 89999999996 799999999 6999999 999997421 1222 34555
Q ss_pred HHHHHHHh
Q 021527 301 KFAKSLKS 308 (311)
Q Consensus 301 ~~~~~l~~ 308 (311)
+.++++.+
T Consensus 213 ~~a~~~~~ 220 (225)
T 1mxs_A 213 ACSAEAIA 220 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=99.14 E-value=6e-09 Score=96.41 Aligned_cols=234 Identities=18% Similarity=0.210 Sum_probs=140.9
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH--HHH-HHHcCCCH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA--ATR-SLARGTNF 124 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a--~~~-Al~~G~~~ 124 (311)
+.|-+.|++..++|++. .-.-+|.. =.+|..+++|+|.|-+ |..|.+=+.- +.. -|..|-.-
T Consensus 14 ~~il~~l~~~i~~~~~i--ig~gaGtG------lsAk~~e~gGaDlii~-------ynsGrfR~~G~~slag~lpygnaN 78 (286)
T 2p10_A 14 SELVDRFQKKIRAGEPI--IGGGAGTG------LSAKSEEAGDIDLIVI-------YNSGRYRMAGRGSLAGLLAYGNAN 78 (286)
T ss_dssp HHHHHHHHHHHHTTCCE--EEEEESSH------HHHHHHHHTTCSEEEE-------CHHHHHHHTTCCGGGGGBTEEEHH
T ss_pred HHHHHHHHHHHhcCCce--EEEecccc------hhhHHHHhCCCCEEEE-------eccchhhhcCccchhhhccccCHH
Confidence 34555665555555543 33455654 5677888999999998 2223221100 000 00011112
Q ss_pred HHHHHHHHHhhccC-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC-----------------CChhhHHHHHH
Q 021527 125 NAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD-----------------VPLEETESLQK 186 (311)
Q Consensus 125 ~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD-----------------lp~ee~~~~~~ 186 (311)
+-++++.+++-..+ ++||+.-......+ ..+..|++.++++|+.|++..- +.+++..++..
T Consensus 79 ~iv~e~~~evlp~v~~iPV~Agv~~~DP~-~~~g~~Le~lk~~Gf~Gv~N~ptvglidG~fr~~LEE~gm~~~~eve~I~ 157 (286)
T 2p10_A 79 QIVVDMAREVLPVVRHTPVLAGVNGTDPF-MVMSTFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIA 157 (286)
T ss_dssp HHHHHHHHHHGGGCSSSCEEEEECTTCTT-CCHHHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCEEEEECCcCCC-cCHHHHHHHHHHhCCceEEECCCcccccchhhhhHhhcCCCHHHHHHHHH
Confidence 34577888887765 78987753222222 2568899999999999995531 23445667888
Q ss_pred HHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe---cCCccCCCCCCC-----chHHHHHHHHhhcC-CCcEEEee
Q 021527 187 EAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS---SIGVTGARASIS-----GHVQTLLREIKESS-TKPVAVGF 257 (311)
Q Consensus 187 ~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs---~~G~TG~~~~~~-----~~~~~~l~~vk~~~-~~Pv~vGf 257 (311)
.+++.|+..+.++. + ++..+.+++....++.+-. .-|..|+..... .-+.+.++.+|+.. ++.|+++.
T Consensus 158 ~A~~~gL~Ti~~v~--~-~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~g 234 (286)
T 2p10_A 158 EAHKLDLLTTPYVF--S-PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHG 234 (286)
T ss_dssp HHHHTTCEECCEEC--S-HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEES
T ss_pred HHHHCCCeEEEecC--C-HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 89999987766653 2 3444566666666555421 112233332221 12344455555543 67777766
Q ss_pred -CCCCHHHHHHHHHc--CCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 258 -GISKPEHVQQVAGW--GADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 258 -GIst~e~v~~v~~~--GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
||++|||++.+++. |+||++.+|++.|.- ..+.++++++.+|.
T Consensus 235 GpIstpeDv~~~l~~t~G~~G~~gASsier~p--------~e~ai~~~~~~fk~ 280 (286)
T 2p10_A 235 GPIANPEDARFILDSCQGCHGFYGASSMERLP--------AEEAIRSQTLAFKA 280 (286)
T ss_dssp TTCCSHHHHHHHHHHCTTCCEEEESHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhcCCCccEEEeehhhhcCC--------HHHHHHHHHHHHHh
Confidence 99999999999999 999999999999953 23467777777775
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-08 Score=92.18 Aligned_cols=198 Identities=14% Similarity=0.222 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHcCCccEEEEEe-----CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCC-CChHHHHHHHHHHHHcC
Q 021527 48 VGLAETFTRLKKQGKVALIPYIT-----AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPL-ADGPVIQAAATRSLARG 121 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~-----~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~-aDGp~Iq~a~~~Al~~G 121 (311)
..+.+.+.+..++|+..+|.=+= -|..+. .-.++++. .++||+.|-+= +||- --|
T Consensus 31 ~~~~~~l~~~~~~~~~~iIAEiKraSPSkg~i~~-dp~~iA~~-~~~GA~aiSVL---Td~~~F~G-------------- 91 (258)
T 4a29_A 31 ISLNERILEFNKRNITAIIAVYERKSPSGLDVER-DPIEYAKF-MERYAVGLSIT---TEEKYFNG-------------- 91 (258)
T ss_dssp CCHHHHHHHHHHTTCCCEEEEECSBCTTSCBCCC-CHHHHHHH-HTTTCSEEEEE---CCSTTTCC--------------
T ss_pred cCHHHHHHHHhhCCCcEEEEEEecCCCCCCCccC-CHHHHHHH-HhCCCeEEEEe---CCCCCCCC--------------
Confidence 34667777777788889998772 233322 23566664 56899999984 3332 223
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhhHHHHHHHHHHcCCCeEEEe
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEETESLQKEAMKNKIELVLFT 199 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee~~~~~~~~~~~gi~~I~li 199 (311)
+ ++.++++|+.+++||+--= +.. ... -+..++..|||+|++ .-|+.++..++.+.++..|++.+.=+
T Consensus 92 -s----~~~L~~vr~~v~lPvLrKD----Fii-d~y-QI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEV 160 (258)
T 4a29_A 92 -S----YETLRKIASSVSIPILMSD----FIV-KES-QIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILI 160 (258)
T ss_dssp -C----HHHHHHHHTTCSSCEEEES----CCC-SHH-HHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred -C----HHHHHHHHHhcCCCEeecc----ccc-cHH-HHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhc
Confidence 2 3577888989999986532 211 111 255688899999876 35666788999999999999977655
Q ss_pred CCCChHHHHHHHHHhCCceEEEEecCCccCCC-CCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 200 TPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR-ASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 200 sp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~-~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
. + ++.++...+....+| |+..-. ..+..++ +...++.... ++.++...||++++|+.++.++|+|||
T Consensus 161 h--~-~~El~rAl~~~a~iI------GINNRnL~tf~vdl-~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~ 230 (258)
T 4a29_A 161 N--D-ENDLDIALRIGARFI------GIMSRDFETGEINK-ENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAF 230 (258)
T ss_dssp S--S-HHHHHHHHHTTCSEE------EECSBCTTTCCBCH-HHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEE
T ss_pred c--h-HHHHHHHhcCCCcEE------EEeCCCccccccCH-HHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEE
Confidence 3 3 344555445444443 332110 1123333 3455555553 577889999999999999999999999
Q ss_pred EEhhHhhch
Q 021527 277 IVGSAMVKL 285 (311)
Q Consensus 277 IVGSaiv~~ 285 (311)
.||++|++.
T Consensus 231 LVGealmr~ 239 (258)
T 4a29_A 231 LISSSLMRN 239 (258)
T ss_dssp EECHHHHHC
T ss_pred EECHHHhCC
Confidence 999999983
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.3e-09 Score=92.26 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=126.8
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI 142 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi 142 (311)
..+++-+.. .+.++..+.++++.++|++++|+. +.+| ++ .+.++++++++.-.+
T Consensus 16 ~~~i~v~r~--~~~~~~~~~~~al~~gGv~~iel~--~k~~--~~--------------------~~~i~~l~~~~~~~~ 69 (214)
T 1wbh_A 16 GPVVPVIVV--KKLEHAVPMAKALVAGGVRVLNVT--LRTE--CA--------------------VDAIRAIAKEVPEAI 69 (214)
T ss_dssp CSEEEEECC--SSGGGHHHHHHHHHHTTCCEEEEE--SCST--TH--------------------HHHHHHHHHHCTTSE
T ss_pred CCEEEEEEC--CCHHHHHHHHHHHHHcCCCEEEEe--CCCh--hH--------------------HHHHHHHHHHCcCCE
Confidence 457777754 345789999999999999999998 3332 11 245666665543222
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
+. +-+ +.. .+.++.+.++|+|+++.|... .+..+.++++|++.++-+ .|+.|- .+. ...|..|+.
T Consensus 70 vg--agt-vi~---~d~~~~A~~aGAd~v~~p~~d----~~v~~~~~~~g~~~i~G~--~t~~e~-~~A--~~~Gad~v~ 134 (214)
T 1wbh_A 70 VG--AGT-VLN---PQQLAEVTEAGAQFAISPGLT----EPLLKAATEGTIPLIPGI--STVSEL-MLG--MDYGLKEFK 134 (214)
T ss_dssp EE--EES-CCS---HHHHHHHHHHTCSCEEESSCC----HHHHHHHHHSSSCEEEEE--SSHHHH-HHH--HHTTCCEEE
T ss_pred Ee--eCE-EEE---HHHHHHHHHcCCCEEEcCCCC----HHHHHHHHHhCCCEEEec--CCHHHH-HHH--HHCCCCEEE
Confidence 22 212 321 467889999999999998543 346677788999888764 344443 332 246777763
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhchhh-hcCCchhHHHHH
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVKLLG-EAQSPEEGLKEL 299 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~~~~-~~~~~~~~~~~~ 299 (311)
- +. .. ...-.++++.+++.. ++|+++-+||+ ++|+.++++. |++|+. ||++++.-. +.++ .+++
T Consensus 135 ~-Fp--a~----~~gG~~~lk~i~~~~~~ipvvaiGGI~-~~n~~~~l~agg~~~v~-gS~i~~~~~~~~~~----~~~i 201 (214)
T 1wbh_A 135 F-FP--AE----ANGGVKALQAIAGPFSQVRFCPTGGIS-PANYRDYLALKSVLCIG-GSWLVPADALEAGD----YDRI 201 (214)
T ss_dssp E-TT--TT----TTTHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHTSTTBSCEE-EGGGSCHHHHHHTC----HHHH
T ss_pred E-ec--Cc----cccCHHHHHHHhhhCCCCeEEEECCCC-HHHHHHHHhcCCCeEEE-eccccChhhhhcCC----HHHH
Confidence 2 22 10 111247899999987 89999999996 7999999998 999999 999997532 1122 3455
Q ss_pred HHHHHHHHh
Q 021527 300 EKFAKSLKS 308 (311)
Q Consensus 300 ~~~~~~l~~ 308 (311)
.+.++++.+
T Consensus 202 ~~~a~~~~~ 210 (214)
T 1wbh_A 202 TKLAREAVE 210 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.11 E-value=7.2e-10 Score=112.01 Aligned_cols=200 Identities=14% Similarity=0.123 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHHHHHHhhccCCCcEEEEecCc-----ch
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT-NFNAILSMLKEVVPQMSCPIALFTYYN-----PI 151 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~-~~~~~~~~i~~ir~~~~iPiilm~Y~n-----~i 151 (311)
.-.+.++.+.+.|+|.|++- | .|| +. .|. +-..-+++++++++++++|+++.+-.. ++
T Consensus 281 dp~~~A~~~~~~Ga~~l~~~----d--l~~---------~~-~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~ 344 (555)
T 1jvn_A 281 KPVQLAQKYYQQGADEVTFL----N--ITS---------FR-DCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDG 344 (555)
T ss_dssp HHHHHHHHHHHTTCSEEEEE----E--EC-------------CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTC
T ss_pred CHHHHHHHHHHcCCCEEEEE----e--CCc---------cc-cccCCCchHHHHHHHHHhhCCCcEEEeCccccchhccc
Confidence 45889999999999999773 1 222 00 000 001235688999988999999886333 24
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhh-------------HHHHHHHHHHcCC-CeEEEeCCC---------------
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEE-------------TESLQKEAMKNKI-ELVLFTTPT--------------- 202 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee-------------~~~~~~~~~~~gi-~~I~lisp~--------------- 202 (311)
+.+...+-++.+.++|+|-|++.-..... ...+.+.++++|- ..+..+...
T Consensus 345 ~~~~~~~~a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~ 424 (555)
T 1jvn_A 345 TKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVF 424 (555)
T ss_dssp CEECHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCE
T ss_pred ccchHHHHHHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccc
Confidence 56666777899999999999886322221 1234555666773 333333321
Q ss_pred ----------------------------ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEE
Q 021527 203 ----------------------------TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVA 254 (311)
Q Consensus 203 ----------------------------t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~ 254 (311)
+..+.++++.+..-+.+.+-+ .-..|...+.+ .++++++++.+++||+
T Consensus 425 ~~~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~-~~~dG~~~G~d---~~li~~l~~~~~iPVI 500 (555)
T 1jvn_A 425 ETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNC-IDKDGSNSGYD---LELIEHVKDAVKIPVI 500 (555)
T ss_dssp ECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECC-GGGTTTCSCCC---HHHHHHHHHHCSSCEE
T ss_pred cccccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeC-CCCCCCCCCCC---HHHHHHHHHhCCccEE
Confidence 123555555554334433211 11223333332 4789999998999999
Q ss_pred EeeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHH
Q 021527 255 VGFGISKPEHVQQVAG-WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 255 vGfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+.+||++++|+.++++ .|+|||+|||+|...- -.++++.++++
T Consensus 501 asGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~-------~~~~e~~~~l~ 544 (555)
T 1jvn_A 501 ASSGAGVPEHFEEAFLKTRADACLGAGMFHRGE-------FTVNDVKEYLL 544 (555)
T ss_dssp ECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTS-------CCHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHhcCChHHHHHHHHHcCC-------CCHHHHHHHHH
Confidence 9999999999999998 8999999999997632 12455555543
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.1e-09 Score=95.38 Aligned_cols=187 Identities=13% Similarity=0.267 Sum_probs=122.1
Q ss_pred cCCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 60 QGKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLA-DGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
.|+..+|.=+=--.|+. ....++++.++++ +..|-+- .||-. -| + ++.++
T Consensus 38 ~~~~~vIaE~K~aSPSkG~i~~~~~~~~iA~~y~~~-A~~IsVl---Td~~~F~g---------------s----~~dL~ 94 (251)
T 1i4n_A 38 KERVKIIAEFKKASPSAGDINADASLEDFIRMYDEL-ADAISIL---TEKHYFKG---------------D----PAFVR 94 (251)
T ss_dssp SSSCEEEEEECSBCSSSCBSCTTCCHHHHHHHHHHH-CSEEEEE---CCCSSSCC---------------C----THHHH
T ss_pred CCCceEEEeecCCCCCCCccCCCCCHHHHHHHHHHh-CCceEEE---ecccccCC---------------C----HHHHH
Confidence 34566777552223332 1567899999998 9999993 23221 11 1 35788
Q ss_pred HhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHH
Q 021527 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~ 210 (311)
.+|+.+++||+---|. ..+. + +..+.++|+|++++- .++.++..++.+.+++.|++.+.=+. +. +.++.
T Consensus 95 ~ir~~v~lPvLrKDfi----~~~~-q-i~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~--~~-eE~~~ 165 (251)
T 1i4n_A 95 AARNLTCRPILAKDFY----IDTV-Q-VKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVH--SR-EDLEK 165 (251)
T ss_dssp HHHTTCCSCEEEECCC----CSTH-H-HHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEEC--SH-HHHHH
T ss_pred HHHHhCCCCEEEeeCC----CCHH-H-HHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeC--CH-HHHHH
Confidence 8888899998854322 2222 3 455999999998773 45667788999999999987665443 43 33444
Q ss_pred HHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 211 IVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 211 i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..+. .|+.++ +...+.++ ...++ +...++.+.. +++++.++||+|+++++++.++ +|||+|||+|++.
T Consensus 166 A~~l-~g~~iIGinnr~l~t----~~~d~-~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~ 236 (251)
T 1i4n_A 166 VFSV-IRPKIIGINTRDLDT----FEIKK-NVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKA 236 (251)
T ss_dssp HHTT-CCCSEEEEECBCTTT----CCBCT-THHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHC
T ss_pred HHhc-CCCCEEEEeCccccc----CCCCH-HHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCC
Confidence 4343 144333 33222222 22222 2344444443 5789999999999999999999 9999999999984
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-09 Score=97.35 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=102.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.++|+++|++-.+ -.+ .+++.+.++++.+..++++++ | +.
T Consensus 16 ~~~~~~a~~~Gv~~v~lr~k----~~~-----------------~~~~~~~i~~l~~~~~~~liv----n--------d~ 62 (210)
T 3ceu_A 16 DKIITALFEEGLDILHLRKP----ETP-----------------AMYSERLLTLIPEKYHRRIVT----H--------EH 62 (210)
T ss_dssp HHHHHHHHHTTCCEEEECCS----SCC-----------------HHHHHHHHHHSCGGGGGGEEE----S--------SC
T ss_pred HHHHHHHHHCCCCEEEEccC----CCC-----------------HHHHHHHHHHHHHHhCCeEEE----e--------CC
Confidence 58899999999999999632 122 234455677787777888888 3 23
Q ss_pred HHHHHHcCCcEEEecC--CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE--ecCCccCCCCCC-
Q 021527 160 MSTVRDIGIRGLVVPD--VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV--SSIGVTGARASI- 234 (311)
Q Consensus 160 i~~~~~aGadGviipD--lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v--s~~G~TG~~~~~- 234 (311)
++.+.++|+|||.+++ ++..+. . ..+..++..++++. ... . .|..|+. +.+ .|+++.+.
T Consensus 63 ~~~A~~~gadgvhl~~~~~~~~~~---------~--~~~ig~s~~t~~e~-~~A--~-~GaDyv~~g~vf-~t~sk~~~~ 126 (210)
T 3ceu_A 63 FYLKEEFNLMGIHLNARNPSEPHD---------Y--AGHVSCSCHSVEEV-KNR--K-HFYDYVFMSPIY-DSISKVNYY 126 (210)
T ss_dssp TTHHHHTTCSEEECCSSSCSCCTT---------C--CSEEEEEECSHHHH-HTT--G-GGSSEEEECCCC----------
T ss_pred HHHHHHcCCCEEEECccccccccc---------c--CCEEEEecCCHHHH-HHH--h-hCCCEEEECCcC-CCCCCCCCC
Confidence 4678889999999973 322111 1 34555666666553 221 2 4666663 222 24443222
Q ss_pred CchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 235 SGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 235 ~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
++--.+.++++++. .++||++-+||+ ++++.++.+.||+||.|||+|.+.
T Consensus 127 ~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav~s~i~~~ 178 (210)
T 3ceu_A 127 STYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVVLGDLWNK 178 (210)
T ss_dssp CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEESHHHHTT
T ss_pred CCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEEhHHhHcC
Confidence 11123568888776 689999999997 899999999999999999999873
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-08 Score=96.88 Aligned_cols=149 Identities=15% Similarity=0.219 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEecC-cchhccCHHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeC
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFTYY-NPILKRGVDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~Y~-n~i~~~g~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lis 200 (311)
+.+.+.+.++++++.++.|+.+.... |+ ..++.++.+.+.|+|.|.+. +.| .++.+.+++.|+..+.-+
T Consensus 61 ~~~~l~~~i~~i~~~~~~p~gVnl~~~~~----~~~~~~~~~~~~g~d~V~l~~g~p----~~~~~~l~~~g~~v~~~v- 131 (326)
T 3bo9_A 61 KPDDLRKAISELRQKTDKPFGVNIILVSP----WADDLVKVCIEEKVPVVTFGAGNP----TKYIRELKENGTKVIPVV- 131 (326)
T ss_dssp CHHHHHHHHHHHHTTCSSCEEEEEETTST----THHHHHHHHHHTTCSEEEEESSCC----HHHHHHHHHTTCEEEEEE-
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeccCC----CHHHHHHHHHHCCCCEEEECCCCc----HHHHHHHHHcCCcEEEEc-
Confidence 34455668888888777888765432 43 23678888999999999886 344 345566778888766544
Q ss_pred CCChHHHHHHHHHhCCceEEEEec-CC-ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 201 PTTPTDRMKAIVEASEGFVYLVSS-IG-VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 201 p~t~~eri~~i~~~a~gfiY~vs~-~G-~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
++. +..+...+..-.++.+... .| .+|. . ...+++.++++..++||++.+||++++++.+++..|||||.|
T Consensus 132 -~s~-~~a~~a~~~GaD~i~v~g~~~GG~~G~---~--~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 132 -ASD-SLARMVERAGADAVIAEGMESGGHIGE---V--TTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp -SSH-HHHHHHHHTTCSCEEEECTTSSEECCS---S--CHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred -CCH-HHHHHHHHcCCCEEEEECCCCCccCCC---c--cHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 333 3344444433333333321 12 2231 1 234778888888899999999999999999999999999999
Q ss_pred hhHhhchhh
Q 021527 279 GSAMVKLLG 287 (311)
Q Consensus 279 GSaiv~~~~ 287 (311)
||+|+...+
T Consensus 205 Gs~~~~~~e 213 (326)
T 3bo9_A 205 GTRFVASVE 213 (326)
T ss_dssp SHHHHTBSS
T ss_pred chHHHcCcc
Confidence 999998764
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-09 Score=97.00 Aligned_cols=180 Identities=13% Similarity=0.205 Sum_probs=124.2
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH-cCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA-RGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~-~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
.+..||| .+.++.+.+.|+|.+++- ..|| +.. ...+ +++++++.++..+|+.+-+
T Consensus 27 ~~~~~dP-----~~~a~~~~~~gad~lhvv------Dld~---------a~~~~~~~----~~~i~~i~~~~~~pl~vGG 82 (243)
T 4gj1_A 27 KVYKYNP-----LKKFKEYEKAGAKELHLV------DLTG---------AKDPSKRQ----FALIEKLAKEVSVNLQVGG 82 (243)
T ss_dssp EECCCCH-----HHHHHHHHHHTCCEEEEE------EHHH---------HHCGGGCC----HHHHHHHHHHCCSEEEEES
T ss_pred cEeCCCH-----HHHHHHHHHCCCCEEEEE------ecCc---------ccccchhH----HHHHHHHHHhcCCCeEecc
Confidence 3456788 899999999999999993 1122 221 2233 3688888888999999976
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-e------------------CCCChHHH
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-T------------------TPTTPTDR 207 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-i------------------sp~t~~er 207 (311)
=.+. .+-++.+.++|+|-+++.-..++....+.+.++++|-..+.+ + +..+..+.
T Consensus 83 GIrs------~e~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~ 156 (243)
T 4gj1_A 83 GIRS------KEEVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEV 156 (243)
T ss_dssp SCCC------HHHHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHH
T ss_pred cccc------HHHHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHH
Confidence 3221 346778889999999999888887777788888888553321 1 11223455
Q ss_pred HHHHHHhCCc-eEEE-EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 208 MKAIVEASEG-FVYL-VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 208 i~~i~~~a~g-fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++++.+..-+ ++|. ++..| +..+.+. ++++++++.. ++||++++|+++.+|++++.. +++||+|||||..
T Consensus 157 ~~~~~~~g~~eil~t~Id~DG---t~~G~d~---~l~~~l~~~~~~ipviasGGv~~~~Dl~~l~~-~~~gvivg~Al~~ 229 (243)
T 4gj1_A 157 LDFYSNKGLKHILCTDISKDG---TMQGVNV---RLYKLIHEIFPNICIQASGGVASLKDLENLKG-ICSGVIVGKALLD 229 (243)
T ss_dssp HHHHHTTTCCEEEEEETTC--------CCCH---HHHHHHHHHCTTSEEEEESCCCSHHHHHHTTT-TCSEEEECHHHHT
T ss_pred HHHHhhcCCcEEEeeeecccc---cccCCCH---HHHHHHHHhcCCCCEEEEcCCCCHHHHHHHHc-cCchhehHHHHHC
Confidence 5655554333 4444 44444 3344443 6788887764 799999999999999999864 5999999999976
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.9e-10 Score=104.56 Aligned_cols=199 Identities=14% Similarity=0.216 Sum_probs=111.8
Q ss_pred HHHHHHHHc-CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH
Q 021527 52 ETFTRLKKQ-GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM 130 (311)
Q Consensus 52 ~~f~~~~~~-~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~ 130 (311)
..|+..+.. ....+++-+-.|+. .+ +..+.+++.|+|+||+-.-. |- + ..+... ...++..++.
T Consensus 105 ~~~~~~~~~~~~~pv~~~i~~~~~-~~---~~~~~~~~~gad~i~i~~~~--~~-~--~~~~~~------~~~~~~~~~~ 169 (349)
T 1p0k_A 105 LSYEIVRKENPNGLIFANLGSEAT-AA---QAKEAVEMIGANALQIHLNV--IQ-E--IVMPEG------DRSFSGALKR 169 (349)
T ss_dssp HHHHHHHHHCSSSCEEEEEETTCC-HH---HHHHHHHHTTCSEEEEEECT--TT-T--C--------------CTTHHHH
T ss_pred cceehhhhhCCCceeEEeecCCCC-HH---HHHHHHHhcCCCeEEecccc--hh-h--hcCCCC------CcchHHHHHH
Confidence 344443332 23456777765543 22 23455677899999885322 10 0 001000 0111125678
Q ss_pred HHHhhccCCCcEEEEe--c-CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHH
Q 021527 131 LKEVVPQMSCPIALFT--Y-YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDR 207 (311)
Q Consensus 131 i~~ir~~~~iPiilm~--Y-~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~er 207 (311)
++++|+.+++||++.+ | ++ .++++.+.++|+|+|++..-.-.. .. .+.+ .|
T Consensus 170 i~~vr~~~~~Pv~vK~~~~~~~-------~~~a~~a~~~Gad~I~v~~~ggt~--------------~~---~~e~--~r 223 (349)
T 1p0k_A 170 IEQICSRVSVPVIVKEVGFGMS-------KASAGKLYEAGAAAVDIGGYGGTN--------------FS---KIEN--LR 223 (349)
T ss_dssp HHHHHHHCSSCEEEEEESSCCC-------HHHHHHHHHHTCSEEEEEC--------------------------------
T ss_pred HHHHHHHcCCCEEEEecCCCCC-------HHHHHHHHHcCCCEEEEcCCCCcc--------------hh---hHHH--hh
Confidence 8899988899999974 3 22 467889999999999986311000 00 0000 00
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.. .+. ......| .+ ..+.|.++++.. ++||++.+||++++|+.+++..|||+|.||++++..+
T Consensus 224 --~~----~~~----~~~~~~g----~~--~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~ 287 (349)
T 1p0k_A 224 --RQ----RQI----SFFNSWG----IS--TAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKAL 287 (349)
T ss_dssp --------CCG----GGGTTCS----CC--HHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred --cc----cch----hhhhccC----cc--HHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 00 000 0000001 11 234577777765 8999999999999999999999999999999999976
Q ss_pred hhcCCchhHHHHHHHHHHHHHh
Q 021527 287 GEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
...+ ++...+.+..+.++|+.
T Consensus 288 ~~~g-~~~~~~~~~~~~~~l~~ 308 (349)
T 1p0k_A 288 TDSG-EEGLLEEIQLILEELKL 308 (349)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHH
T ss_pred hhcC-HHHHHHHHHHHHHHHHH
Confidence 4211 11222445555555553
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-10 Score=102.30 Aligned_cols=172 Identities=11% Similarity=0.062 Sum_probs=112.7
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
|...+|| .+.++.+.+.|+|.+++= ..|| .+ ++.++++.+++.+|+.+.+-
T Consensus 34 ~~~~~dp-----~~~A~~~~~~Ga~~l~vv------DL~~--------------~n----~~~i~~i~~~~~~pv~vgGG 84 (260)
T 2agk_A 34 FVSQHPS-----SYYAKLYKDRDVQGCHVI------KLGP--------------NN----DDAAREALQESPQFLQVGGG 84 (260)
T ss_dssp ---CCCH-----HHHHHHHHHTTCTTCEEE------EESS--------------SC----HHHHHHHHHHSTTTSEEESS
T ss_pred cccCCCH-----HHHHHHHHHcCCCEEEEE------eCCC--------------CC----HHHHHHHHhcCCceEEEeCC
Confidence 3355788 899999999999999982 1222 12 24777888788899998764
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhh-----HHHHHHHHHHcCC-CeEEEeCCC-------------------
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-----TESLQKEAMKNKI-ELVLFTTPT------------------- 202 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-----~~~~~~~~~~~gi-~~I~lisp~------------------- 202 (311)
... + -++.+. +|++-+++.-..+++ .+.+.+.++++|- ..+..+...
T Consensus 85 ir~------~-~~~~~l-~Ga~~Viigs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~ 156 (260)
T 2agk_A 85 IND------T-NCLEWL-KWASKVIVTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTD 156 (260)
T ss_dssp CCT------T-THHHHT-TTCSCEEECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEE
T ss_pred CCH------H-HHHHHh-cCCCEEEECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccC
Confidence 321 2 345556 999999987654444 5555666666662 222222110
Q ss_pred -ChH-HHHHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcC----CCcEEEeeCCCCHHHHHHHHHc--CC
Q 021527 203 -TPT-DRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIKESS----TKPVAVGFGISKPEHVQQVAGW--GA 273 (311)
Q Consensus 203 -t~~-eri~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~----~~Pv~vGfGIst~e~v~~v~~~--GA 273 (311)
... +.++.+.+.+..++|. ++..| ...+.+ .++++++++.+ ++||++++||+++||++++++. |+
T Consensus 157 ~~~~~e~a~~~~~~a~~il~t~i~~dG---~~~G~d---~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~ 230 (260)
T 2agk_A 157 LELNADTFRELRKYTNEFLIHAADVEG---LCGGID---ELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGK 230 (260)
T ss_dssp EEESHHHHHHHTTTCSEEEEEC----------CCCC---HHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHhcCEEEEEeecccc---CcCCCC---HHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCC
Confidence 113 5556665554445554 33333 333332 47899999988 9999999999999999999998 99
Q ss_pred cEEEEhhHh
Q 021527 274 DGVIVGSAM 282 (311)
Q Consensus 274 DGvIVGSai 282 (311)
|||+|||++
T Consensus 231 ~gvivg~al 239 (260)
T 2agk_A 231 VDLTFGSSL 239 (260)
T ss_dssp EEEECCTTB
T ss_pred CEEEeeCCH
Confidence 999999996
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.6e-08 Score=90.26 Aligned_cols=183 Identities=17% Similarity=0.215 Sum_probs=104.2
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+ ++..+|++++=+-+==-|..-+ ...+++++.+ + ..++.+.- |
T Consensus 26 tgky~~~~~~~~---a~~asg~e~vtva~rR~~~~~~---------------~~~~~~~~~i---~-~~~~~~lp----N 79 (265)
T 1wv2_A 26 TGKYKDLDETRR---AIEASGAEIVTVAVRRTNIGQN---------------PDEPNLLDVI---P-PDRYTILP----N 79 (265)
T ss_dssp CSCSSSHHHHHH---HHHHSCCSEEEEEGGGCCC-------------------------------C-TTTSEEEE----E
T ss_pred cCCCCCHHHHHH---HHHHhCCCeEEEEEEeeccccC---------------CCcchHHhhh---h-hcCCEECC----c
Confidence 666777665544 4566999999995322111000 0112334444 2 23444443 4
Q ss_pred chhccCHHHHHH---HHHH-cC-CcEEE---ecC--CCh---hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 150 PILKRGVDNFMS---TVRD-IG-IRGLV---VPD--VPL---EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~-aG-adGvi---ipD--lp~---ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
+--.+..++-++ .+.+ ++ -+=+= ++| ..+ .+..+..+.+.+.|+..+++++++ ..-.+.+.+...
T Consensus 80 Tag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd--~~~akrl~~~G~ 157 (265)
T 1wv2_A 80 TAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDD--PIIARQLAEIGC 157 (265)
T ss_dssp CTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSC--HHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCC
Confidence 444445555443 3455 43 33221 233 111 334444455556699988888876 333344555444
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.++.-....-.|| .++.. .++|+.+++..++||++++||++|+|+.++.++|||||+|||+|.+
T Consensus 158 ~aVmPlg~pIGsG--~Gi~~--~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~ 221 (265)
T 1wv2_A 158 IAVMPLAGLIGSG--LGICN--PYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAH 221 (265)
T ss_dssp SEEEECSSSTTCC--CCCSC--HHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred CEEEeCCccCCCC--CCcCC--HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence 4542212211233 23322 4788999998899999999999999999999999999999999997
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-08 Score=93.10 Aligned_cols=180 Identities=18% Similarity=0.240 Sum_probs=104.2
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+ ++..+|++++=+.+-=.++. ++ .+ +++++.+ + ++++.. |
T Consensus 19 tgky~~~~~~~~---ai~asg~eivtva~rR~~~~-~~------------~~---~~~~~~i---~---~~~~lp----n 69 (268)
T 2htm_A 19 SGKYEDFGVMRE---AIAAAKAEVVTVSVRRVELK-AP------------GH---VGLLEAL---E---GVRLLP----N 69 (268)
T ss_dssp CSSCSCHHHHHH---HHHHTTCSEEEEEEEECC-----------------------CHHHHT---T---TSEEEE----B
T ss_pred cCCCCCHHHHHH---HHHHhCCCEEEEEccccCCC-CC------------Cc---ccHHHHH---h---hhhccC----c
Confidence 667787665544 55669999999863222221 10 01 2233444 2 556655 4
Q ss_pred chhccCHHHHHHH---HHHcCCcEEE----ecC--CCh---hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMST---VRDIGIRGLV----VPD--VPL---EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~~---~~~aGadGvi----ipD--lp~---ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+--.+..++.++. ..+.+..-++ ++| +.. .|..+-.+.+.+.|+..++.++++- .-.+++.+....
T Consensus 70 taG~~taeeAv~~a~lare~~gt~~iKlEvi~d~~~l~pD~~~tv~aa~~L~k~Gf~Vlpy~~~D~--~~ak~l~~~G~~ 147 (268)
T 2htm_A 70 TAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGPDL--VLAKRLAALGTA 147 (268)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHCCSEEBCCCCSCTTTTCCCHHHHHHHHHHHHHTTCEECCEECSCH--HHHHHHHHHTCS
T ss_pred ccCCCCHHHHHHHHHhhhHhcCcceeeeeeccCccccCcCHHHHHHHHHHHHHCCCEEeeccCCCH--HHHHHHHhcCCC
Confidence 4444455555442 3443333332 222 111 2333334444555998887776542 334445454333
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhh-cCC-CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKE-SST-KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~-~~~-~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.| +..-..-|+..++.. .++++.+++ ..+ +||++++||.+|+|+.++.+.|||||+|||+|.+
T Consensus 148 aV--mPlg~pIGsG~Gi~~--~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~ 212 (268)
T 2htm_A 148 TV--MPLAAPIGSGWGVRT--RALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAE 212 (268)
T ss_dssp CB--EEBSSSTTTCCCSTT--HHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHT
T ss_pred EE--EecCccCcCCcccCC--HHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence 33 332111222223322 467889888 668 9999999999999999999999999999999997
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.4e-10 Score=102.62 Aligned_cols=178 Identities=19% Similarity=0.283 Sum_probs=109.4
Q ss_pred HHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 79 TAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGT-NFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~-~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
+.+.++..+++|+..+.. +.|.+ .| -..|+ ++ .-.+.|++|++.+++||+-..- .|
T Consensus 20 ~~eqa~iae~aGa~av~~l~~~p~d-------------~r-~~gGv~Rm-~dp~~I~~I~~aVsIPVm~k~r------ig 78 (291)
T 3o07_A 20 TPEQAKIAEKSGACAVMALESIPAD-------------MR-KSGKVCRM-SDPKMIKDIMNSVSIPVMAKVR------IG 78 (291)
T ss_dssp SHHHHHHHHHHTCSEEEECSSCHHH-------------HH-TTTCCCCC-CCHHHHHHHHTTCSSCEEEEEE------TT
T ss_pred CHHHHHHHHHhCchhhhhccCCCch-------------hh-hcCCcccc-CCHHHHHHHHHhCCCCeEEEEe------cC
Confidence 368999999999999998 44431 11 11233 11 1146899999999999988653 23
Q ss_pred HHHHHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEec-CCccC----
Q 021527 156 VDNFMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSS-IGVTG---- 229 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~-~G~TG---- 229 (311)
.-.-.+.+.++|+|-+=..+ +.+.+ ....+.++.++..+++.-.+-.|-+..+. .|+..+-+. ...||
T Consensus 79 h~~EAqilea~GaD~IDesevltpad---~~~~I~k~~f~vpfv~~~~~l~EAlrri~---eGA~mIrTtge~gtg~v~~ 152 (291)
T 3o07_A 79 HFVEAQIIEALEVDYIDESEVLTPAD---WTHHIEKDKFKVPFVCGAKDLGEALRRIN---EGAAMIRTKGEAGTGDVSE 152 (291)
T ss_dssp CHHHHHHHHHTTCSEEEEETTSCCSC---SSCCCCGGGCSSCEEEEESSHHHHHHHHH---HTCSEEEECCCTTSCCTHH
T ss_pred cHHHHHHHHHcCCCEEecccCCCHHH---HHHHhhhhcCCCcEEeeCCCHHHHHHHHH---CCCCEEEecCcCCCccHHH
Confidence 33345567889999763332 12211 11222233333333344455555554443 354444321 10111
Q ss_pred -----------------C-C--------CCCCchHHHHHHHHhhcCCCcEE--EeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 230 -----------------A-R--------ASISGHVQTLLREIKESSTKPVA--VGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 230 -----------------~-~--------~~~~~~~~~~l~~vk~~~~~Pv~--vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
. . ....+ ..++|+++++..++||+ ..+||.||+++.++++.|+|||.|||+
T Consensus 153 av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~a-d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrA 231 (291)
T 3o07_A 153 AVKHIRRITEEIKACQQLKSEDDIAKVAEEMRV-PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSG 231 (291)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHhhhcccccCC-CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchH
Confidence 0 0 01112 25789999998889985 489999999999999999999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
+.+
T Consensus 232 I~~ 234 (291)
T 3o07_A 232 IFK 234 (291)
T ss_dssp GGG
T ss_pred HhC
Confidence 998
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=94.70 Aligned_cols=170 Identities=21% Similarity=0.288 Sum_probs=106.8
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc-chhccC--
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN-PILKRG-- 155 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n-~i~~~g-- 155 (311)
..+.+...+++|||.|||. ++ ++.| |.|.. ...++.+++..++||.+|.--. .-|.|.
T Consensus 48 s~~~a~~A~~gGAdRIELc---~~-l~~G-------------GlTPS--~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~ 108 (287)
T 3iwp_A 48 SVESAVNAERGGADRIELC---SG-LSEG-------------GTTPS--MGVLQVVKQSVQIPVFVMIRPRGGDFLYSDR 108 (287)
T ss_dssp SHHHHHHHHHHTCSEEEEC---BC-GGGT-------------CBCCC--HHHHHHHHTTCCSCEEEECCSSSSCSCCCHH
T ss_pred CHHHHHHHHHhCCCEEEEC---CC-CCCC-------------CCCCC--HHHHHHHHHhcCCCeEEEEecCCCCcccCHH
Confidence 4688888899999999997 33 2222 34322 3467777778899999995111 112233
Q ss_pred ----HHHHHHHHHHcCCcEEEec----C--CChhhHHHHHHHHHHcCCCeEEEeC---CCChHHHHHHHHHhCCceEEEE
Q 021527 156 ----VDNFMSTVRDIGIRGLVVP----D--VPLEETESLQKEAMKNKIELVLFTT---PTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 156 ----~~~fi~~~~~aGadGviip----D--lp~ee~~~~~~~~~~~gi~~I~lis---p~t~~eri~~i~~~a~gfiY~v 222 (311)
..+.++.++++|+|||++. | +..+...++.+.++ ++.+.+--+ -..+.+-++.+.+. ||.-+.
T Consensus 109 E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~--~l~vTFHRAFD~~~d~~~Ale~Li~l--GvdrIL 184 (287)
T 3iwp_A 109 EIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICR--PLPVTFHRAFDMVHDPMAALETLLTL--GFERVL 184 (287)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHHT--TSCEEECGGGGGCSCHHHHHHHHHHH--TCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHcC--CCcEEEECchhccCCHHHHHHHHHHc--CCCEEE
Confidence 2456778999999999996 4 33334555655543 444443221 11345666666665 665444
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHH-cCCcEEE
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAG-WGADGVI 277 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~-~GADGvI 277 (311)
+ +|++...... .+.|+++.+.. .++|++|+||+ ++|+.++.+ .|++-+=
T Consensus 185 T----SG~~~~a~~G-l~~Lk~Lv~~a~~rI~ImaGGGV~-~~Ni~~l~~~tG~~~~H 236 (287)
T 3iwp_A 185 T----SGCDSSALEG-LPLIKRLIEQAKGRIVVMPGGGIT-DRNLQRILEGSGATEFH 236 (287)
T ss_dssp E----CTTSSSTTTT-HHHHHHHHHHHTTSSEEEECTTCC-TTTHHHHHHHHCCSEEE
T ss_pred C----CCCCCChHHh-HHHHHHHHHHhCCCCEEEECCCcC-HHHHHHHHHhhCCCEEe
Confidence 3 4444333333 35666665543 48999999997 699999987 8887763
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-08 Score=101.85 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~ 156 (311)
...+.++.|.++|+|.|+++.-. | . .+..+++++++++.. ++||++.... .
T Consensus 231 d~~~~a~~l~~aG~d~I~id~a~------g--------------~-~~~~~~~i~~ir~~~p~~~Vi~g~v~-------t 282 (496)
T 4fxs_A 231 GNEERVKALVEAGVDVLLIDSSH------G--------------H-SEGVLQRIRETRAAYPHLEIIGGNVA-------T 282 (496)
T ss_dssp CCHHHHHHHHHTTCSEEEEECSC------T--------------T-SHHHHHHHHHHHHHCTTCCEEEEEEC-------S
T ss_pred chHHHHHHHHhccCceEEecccc------c--------------c-chHHHHHHHHHHHHCCCceEEEcccC-------c
Confidence 45788999999999999998432 2 1 134567899999876 8898873221 2
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+.++.+.++|+|++++.--| | +..++ |. ++|. +.+
T Consensus 283 ~e~a~~l~~aGaD~I~Vg~g~--------------G-------s~~~t--r~------------------~~g~--g~p- 318 (496)
T 4fxs_A 283 AEGARALIEAGVSAVKVGIGP--------------G-------SICTT--RI------------------VTGV--GVP- 318 (496)
T ss_dssp HHHHHHHHHHTCSEEEECSSC--------------C-------TTBCH--HH------------------HHCC--CCC-
T ss_pred HHHHHHHHHhCCCEEEECCCC--------------C-------cCccc--cc------------------ccCC--Ccc-
Confidence 457788999999999864111 0 11111 11 1111 011
Q ss_pred hHHHHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 237 HVQTLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 237 ~~~~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
..+.+.++.+ ..++||++++||++++++.+++.+|||+|.+||+|....+
T Consensus 319 -~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~t~E 371 (496)
T 4fxs_A 319 -QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEE 371 (496)
T ss_dssp -HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred -HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhcCCC
Confidence 1123333333 3479999999999999999999999999999999988664
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-07 Score=88.35 Aligned_cols=138 Identities=18% Similarity=0.268 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHCC--CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 77 STTAEALKLLDSCG--SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~G--aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+...+.++.+.++| +|++++.....| .....+.++++|+.++.|+++.+...
T Consensus 105 ~~~~~~a~~~~~~g~~~~~i~i~~~~G~---------------------~~~~~~~i~~lr~~~~~~~vi~G~v~----- 158 (336)
T 1ypf_A 105 EDEYEFVQQLAAEHLTPEYITIDIAHGH---------------------SNAVINMIQHIKKHLPESFVIAGNVG----- 158 (336)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECSSCC---------------------SHHHHHHHHHHHHHCTTSEEEEEEEC-----
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCC---------------------cHHHHHHHHHHHHhCCCCEEEECCcC-----
Confidence 44567788889999 999998653211 12346788899888765555544111
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
..+.++.+.++|+|+|++..-+ |- + . ..+. . . + .|..| .
T Consensus 159 -s~e~A~~a~~aGad~Ivvs~hg--------------G~--~------~-~~~~--~-~---~-------~g~~g----~ 197 (336)
T 1ypf_A 159 -TPEAVRELENAGADATKVGIGP--------------GK--V------C-ITKI--K-T---G-------FGTGG----W 197 (336)
T ss_dssp -SHHHHHHHHHHTCSEEEECSSC--------------ST--T------C-HHHH--H-H---S-------CSSTT----C
T ss_pred -CHHHHHHHHHcCCCEEEEecCC--------------Cc--e------e-eccc--c-c---C-------cCCch----h
Confidence 1367888999999999885422 00 0 0 1110 0 0 0 01111 0
Q ss_pred CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+.+.++++..++||++.+||++++++.+++..|||+|.||+++..
T Consensus 198 ---~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~ 244 (336)
T 1ypf_A 198 ---QLAALRWCAKAASKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAG 244 (336)
T ss_dssp ---HHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTT
T ss_pred ---HHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhc
Confidence 23568888888899999999999999999999999999999999994
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-07 Score=93.29 Aligned_cols=185 Identities=15% Similarity=0.169 Sum_probs=119.0
Q ss_pred CccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 62 KVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLA-DGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 62 ~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
+..+|.=+=--.|+. ....++++.++++ |..|-+= .||-. -| + ++.++++
T Consensus 47 ~~~vIaEvKraSPSkG~i~~~~~~~~iA~~y~~~-A~~IsvL---Td~~~F~g---------------s----~~dL~~v 103 (452)
T 1pii_A 47 RTAFILECKKASPSKGVIRDDFDPARIAAIYKHY-ASAISVL---TDEKYFQG---------------S----FNFLPIV 103 (452)
T ss_dssp SCEEEEEECSEETTTEESCSSCCHHHHHHHHTTT-CSEEEEE---CCSTTTCC---------------C----TTHHHHH
T ss_pred CCceEEEecCCCCCCCccCCCCCHHHHHHHHHhh-CcEEEEE---ecccccCC---------------C----HHHHHHH
Confidence 466776552223332 2457889998888 9999992 22211 11 1 2477788
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
|+.+++||+---|. ....+ +..+..+|+|++++- .++.++..++.+.+++.|++.+.=+ ++. +.++...
T Consensus 104 r~~v~lPvLrKDFI-----~d~~Q-i~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEv--h~~-eE~~~A~ 174 (452)
T 1pii_A 104 SQIAPQPILCKDFI-----IDPYQ-IYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEV--SNE-EEQERAI 174 (452)
T ss_dssp HHHCCSCEEEESCC-----CSHHH-HHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEE--CSH-HHHHHHH
T ss_pred HHhcCCCeEEEecc-----CCHHH-HHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEe--CCH-HHHHHHH
Confidence 88899998654322 22233 455899999998773 5666778899999999998766544 343 4444443
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+....+|= +...+.+. +..++ +...++.+.. +++++..+||+|++|++++.++ ||||.|||+|++.
T Consensus 175 ~lga~iIG-innr~L~t----~~~dl-~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~ 242 (452)
T 1pii_A 175 ALGAKVVG-INNRDLRD----LSIDL-NRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAH 242 (452)
T ss_dssp HTTCSEEE-EESEETTT----TEECT-HHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTC
T ss_pred HCCCCEEE-EeCCCCCC----CCCCH-HHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCC
Confidence 43333332 22222221 22222 3344444432 6899999999999999999999 9999999999994
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.1e-08 Score=96.54 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g 155 (311)
....+.++.|.++|+|+|+++.-..+ ....++.++++++.. ++|+++-...
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g~---------------------~~~~~~~v~~i~~~~p~~~Vi~g~v~------- 279 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHGH---------------------SKGVIERVRWVKQTFPDVQVIGGNIA------- 279 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCCS---------------------BHHHHHHHHHHHHHCTTSEEEEEEEC-------
T ss_pred cchHHHHHHHhhcccceEEecccCCc---------------------chhHHHHHHHHHHHCCCceEEEeeeC-------
Confidence 35678899999999999999833311 134567889998876 7898874221
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCCh-HHHHHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTP-TDRMKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~-~eri~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
..+.++.+.++|+|+|.+.-- |.+. ..|. .+|. +.
T Consensus 280 t~e~a~~l~~aGaD~I~vg~g------------------------~Gs~~~t~~------------------~~g~--g~ 315 (490)
T 4avf_A 280 TAEAAKALAEAGADAVKVGIG------------------------PGSICTTRI------------------VAGV--GV 315 (490)
T ss_dssp SHHHHHHHHHTTCSEEEECSS------------------------CSTTCHHHH------------------HTCB--CC
T ss_pred cHHHHHHHHHcCCCEEEECCC------------------------CCcCCCccc------------------cCCC--Cc
Confidence 245678899999999986311 1110 0111 0111 11
Q ss_pred CchHHHHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 235 SGHVQTLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 235 ~~~~~~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+ . .+.+.++++ ..++||++.+||++++++.+++.+|||+|.|||+|...-+
T Consensus 316 p-~-~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~~~E 369 (490)
T 4avf_A 316 P-Q-ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEE 369 (490)
T ss_dssp C-H-HHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTTBTT
T ss_pred c-H-HHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhcCCC
Confidence 1 1 234444444 3479999999999999999999999999999999988554
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-07 Score=98.41 Aligned_cols=195 Identities=20% Similarity=0.197 Sum_probs=118.4
Q ss_pred HHHHHHHHHcC-CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH--HcCCCHHHH
Q 021527 51 AETFTRLKKQG-KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL--ARGTNFNAI 127 (311)
Q Consensus 51 ~~~f~~~~~~~-~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al--~~G~~~~~~ 127 (311)
.+.+.++++.. ...++.-+..| .+.+.+.+.++.++++|+|+|||.+ +.|..-+ .+.+ ..+.+.+.+
T Consensus 622 ~~~i~~~~~~~~~~~~i~~i~~g-~~~~~~~~~a~~~~~~g~d~iein~--~~P~~~~-------~~~~G~~~~~~~~~~ 691 (1025)
T 1gte_A 622 CQSVTELKADFPDNIVIASIMCS-YNKNDWMELSRKAEASGADALELNL--SCPHGMG-------ERGMGLACGQDPELV 691 (1025)
T ss_dssp HHHHHHHHHHCTTSEEEEEECCC-SCHHHHHHHHHHHHHTTCSEEEEEC--CCBCCCC------------SBGGGCHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEEC--CCCCCCC-------CCCcccccccCHHHH
Confidence 33444555432 33454444444 4568999999999999999999974 3343211 0000 011355667
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCCh-HH
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTP-TD 206 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~-~e 206 (311)
.++++.+|+.+++||++-.-.|. ..+.++++.+.++|+|++++..-... ..+++.-.--.|... ..
T Consensus 692 ~~iv~~v~~~~~~Pv~vK~~~~~---~~~~~~a~~~~~~G~d~i~v~Nt~~~----------~~~~~~~~~~~~~~~~~g 758 (1025)
T 1gte_A 692 RNICRWVRQAVQIPFFAKLTPNV---TDIVSIARAAKEGGADGVTATNTVSG----------LMGLKADGTPWPAVGAGK 758 (1025)
T ss_dssp HHHHHHHHHHCSSCEEEEECSCS---SCHHHHHHHHHHHTCSEEEECCCEEE----------CCCBCTTSCBSSCBTTTT
T ss_pred HHHHHHHHHhhCCceEEEeCCCh---HHHHHHHHHHHHcCCCEEEEeccccc----------cccccccccccccccccc
Confidence 78999999888999998653331 13567888889999999988421100 000100000000000 00
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
| ...+ |.+|. ...+...+++.++++.+ ++||+..+||+|++++.+++..|||+|.||++++.
T Consensus 759 r------~~~g--------g~sg~--~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~ 821 (1025)
T 1gte_A 759 R------TTYG--------GVSGT--AIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN 821 (1025)
T ss_dssp B------BCCE--------EEESG--GGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred c------ccCC--------CCCcc--cchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEeecccc
Confidence 0 0000 11221 11122246889998887 89999999999999999999999999999999996
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.1e-08 Score=96.64 Aligned_cols=162 Identities=18% Similarity=0.255 Sum_probs=95.9
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-----------------cC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-----------------QM 138 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-----------------~~ 138 (311)
.+++.+.++.+.+. +|+|||.+ |.|.-.| .+.++..-.+.++++.+++.++ ..
T Consensus 198 ~~Dy~~~a~~l~~~-ad~ieiNi--ScPNt~G-------l~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~ 267 (415)
T 3i65_A 198 VDDLKYCINKIGRY-ADYIAINV--SSPNTPG-------LRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTK 267 (415)
T ss_dssp HHHHHHHHHHHGGG-CSEEEEEC--CCCC---------------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSS
T ss_pred HHHHHHHHHHHHhh-CCEEEEEC--CCCCCCC-------cccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCC
Confidence 57888889998877 99999986 5565544 2233333334444444444321 13
Q ss_pred CCc-EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 139 SCP-IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 139 ~iP-iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
++| |.+-.-.|.- .-.+.++++.+.++|+|||++..-..+. .+++ + . ....|
T Consensus 268 ~~P~V~VKi~pd~~-~~~i~~iA~~a~~aGaDgIiv~Ntt~~r----------~dl~--------~-------~-~~~~G 320 (415)
T 3i65_A 268 KKPLVFVKLAPDLN-QEQKKEIADVLLETNIDGMIISNTTTQI----------NDIK--------S-------F-ENKKG 320 (415)
T ss_dssp SCCEEEEEECSCCC-HHHHHHHHHHHHHHTCSEEEECCCBSCC----------CCCG--------G-------G-TTCCS
T ss_pred CCCeEEEEecCCCC-HHHHHHHHHHHHHcCCcEEEEeCCCccc----------cccc--------c-------c-ccccC
Confidence 689 7775422200 0013455666667777777665321110 0110 0 0 00011
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|.+|. .+.+...+++.++++.+ ++||+..+||+|++++.+.+..|||+|.|||+++.
T Consensus 321 --------GlSG~--a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~ 379 (415)
T 3i65_A 321 --------GVSGA--KLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVF 379 (415)
T ss_dssp --------EEEEG--GGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHH
T ss_pred --------CcCCc--cchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHh
Confidence 22332 12233457899999987 79999999999999999999999999999999975
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-07 Score=84.54 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=112.4
Q ss_pred CccEEEEEe-----CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc
Q 021527 62 KVALIPYIT-----AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP 136 (311)
Q Consensus 62 ~~~li~yi~-----~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~ 136 (311)
.+.++.++. ....+.+...+.++.+.+.|++.|.+. | | +++.+++
T Consensus 25 ~~~~~~~id~~~~l~p~~~~~~~~~~~~~~~~~g~~~i~~~-----~---~----------------------~~~~~~~ 74 (273)
T 2qjg_A 25 EKTVIVPMDHGVSNGPIKGLIDIRKTVNDVAEGGANAVLLH-----K---G----------------------IVRHGHR 74 (273)
T ss_dssp CCEEEEECCHHHHHCSCTTSSSHHHHHHHHHHHTCSEEEEC-----H---H----------------------HHHSCCC
T ss_pred CCEEEEEcccccccCCCcchhhHHHHHHHHHhcCCCEEEeC-----H---H----------------------HHHHHHH
Confidence 566777762 223345677889999999999999862 1 2 1222222
Q ss_pred --cCCCcEEEEecCcc-----hhccCHHHHHHHHHHcCCcEE--Ee--cCCChh----hHHHHHHHHHHcCCCeEEEeCC
Q 021527 137 --QMSCPIALFTYYNP-----ILKRGVDNFMSTVRDIGIRGL--VV--PDVPLE----ETESLQKEAMKNKIELVLFTTP 201 (311)
Q Consensus 137 --~~~iPiilm~Y~n~-----i~~~g~~~fi~~~~~aGadGv--ii--pDlp~e----e~~~~~~~~~~~gi~~I~lisp 201 (311)
..++|+++-.-... ........-++.+.+.|+|.| .+ ...+.+ +..++.+.|+++|+.++..+.+
T Consensus 75 ~~~~~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~ 154 (273)
T 2qjg_A 75 GYGKDVGLIIHLSGGTAISPNPLKKVIVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYP 154 (273)
T ss_dssp SSSCCCEEEEECEECCTTSSSTTCCEECSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hhcCCCCEEEEEcCCCcCCCCcccchHHHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 13577765321111 100001235677889999998 33 234433 3567888899999987765521
Q ss_pred --------CChH--HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCC--HHH----H
Q 021527 202 --------TTPT--DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISK--PEH----V 265 (311)
Q Consensus 202 --------~t~~--eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst--~e~----v 265 (311)
.++. +...+.+. ..|..|+.... + . + .+.++++++.+++||++-+||++ .++ +
T Consensus 155 ~G~~l~~~~~~~~~~~~a~~a~-~~Gad~i~~~~--~-----~--~-~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~ 223 (273)
T 2qjg_A 155 RGKHIQNERDPELVAHAARLGA-ELGADIVKTSY--T-----G--D-IDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMI 223 (273)
T ss_dssp CSTTCSCTTCHHHHHHHHHHHH-HTTCSEEEECC--C-----S--S-HHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHH
T ss_pred CCcccCCCCCHhHHHHHHHHHH-HcCCCEEEECC--C-----C--C-HHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH
Confidence 1221 22212222 24555553321 1 1 1 36788888878999999999984 677 7
Q ss_pred HHHHHcCCcEEEEhhHhhch
Q 021527 266 QQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 266 ~~v~~~GADGvIVGSaiv~~ 285 (311)
.++.+.|||||.|||+|.+.
T Consensus 224 ~~~~~~Ga~gv~vg~~i~~~ 243 (273)
T 2qjg_A 224 KDAMEAGAAGVAVGRNIFQH 243 (273)
T ss_dssp HHHHHHTCSEEECCHHHHTS
T ss_pred HHHHHcCCcEEEeeHHhhCC
Confidence 77778999999999999873
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3e-07 Score=88.00 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEec-CC-ccCCCC
Q 021527 156 VDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSS-IG-VTGARA 232 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~-~G-~TG~~~ 232 (311)
.++.++.+.+.|+|.|.++ +.|. .++.+.+++.|+.++.-+ ++.++ .+...+..-.++.+... .| .+|...
T Consensus 111 ~~~~~~~~~~~g~~~V~~~~g~~~---~~~i~~~~~~g~~v~~~v--~t~~~-a~~a~~~GaD~i~v~g~~~GGh~g~~~ 184 (369)
T 3bw2_A 111 YDAKLAVLLDDPVPVVSFHFGVPD---REVIARLRRAGTLTLVTA--TTPEE-ARAVEAAGADAVIAQGVEAGGHQGTHR 184 (369)
T ss_dssp HHHHHHHHHHSCCSEEEEESSCCC---HHHHHHHHHTTCEEEEEE--SSHHH-HHHHHHTTCSEEEEECTTCSEECCCSS
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCc---HHHHHHHHHCCCeEEEEC--CCHHH-HHHHHHcCCCEEEEeCCCcCCcCCCcc
Confidence 4677888999999999886 3332 234555667787544333 45443 43333322233333221 12 234321
Q ss_pred CC--C----chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 233 SI--S----GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 233 ~~--~----~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.. + ....++++++++..++||++.+||.+++++.+++..|||||.|||+|...-
T Consensus 185 ~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~ 244 (369)
T 3bw2_A 185 DSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATD 244 (369)
T ss_dssp CCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTST
T ss_pred cccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCc
Confidence 10 0 233578899988889999999999999999999999999999999998754
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=91.66 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=100.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEE--cCC------------CCCCCCChH--H-------H--HH--HHHHHHHcCCCHHHHH
Q 021527 76 LSTTAEALKLLDSCGSDIIEL--GVP------------YSDPLADGP--V-------I--QA--AATRSLARGTNFNAIL 128 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IEl--G~P------------fsDP~aDGp--~-------I--q~--a~~~Al~~G~~~~~~~ 128 (311)
.+...+.++.+.++|++.+++ ..| |+.|..-+. + + .. +....+..-++.+...
T Consensus 135 ~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~ 214 (380)
T 1p4c_A 135 REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNW 214 (380)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccH
Confidence 577888999999999999998 333 322311010 0 0 00 0000011111222224
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHH
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRM 208 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri 208 (311)
+.++++++.+++|+++-+.. ..+.++.+.++|+|+|++..-. | . .
T Consensus 215 ~~i~~i~~~~~~Pv~vkgv~-------t~e~a~~a~~aGad~I~vs~~g--------------g-~-------~------ 259 (380)
T 1p4c_A 215 EALRWLRDLWPHKLLVKGLL-------SAEDADRCIAEGADGVILSNHG--------------G-R-------Q------ 259 (380)
T ss_dssp HHHHHHHHHCCSEEEEEEEC-------CHHHHHHHHHTTCSEEEECCGG--------------G-T-------S------
T ss_pred HHHHHHHHhcCCCEEEEecC-------cHHHHHHHHHcCCCEEEEcCCC--------------C-C-------c------
Confidence 68889998899999986521 2457888999999999884210 0 0 0
Q ss_pred HHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 209 KAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 209 ~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+ .+ | ++ ..+.+.++++.++.||++.+||++++|+.+++..|||+|.||++++..+.
T Consensus 260 ---------~------d~--~-----~~-~~~~l~~v~~~~~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~ 315 (380)
T 1p4c_A 260 ---------L------DC--A-----IS-PMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLA 315 (380)
T ss_dssp ---------C------TT--C-----CC-GGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHH
T ss_pred ---------C------CC--C-----cC-HHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHH
Confidence 0 01 1 11 13457777777778999999999999999999999999999999998663
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.1e-08 Score=90.68 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=108.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.++++|+++|..-.|- |...+. ..|...-.-.+.++++++.+++||..-.. .|..+-
T Consensus 27 ~e~A~~ae~aGA~aI~~l~~v-------~~d~~~-----~~G~arm~~p~~i~~I~~av~iPV~~K~r------ig~~~e 88 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMALERV-------PADIRA-----AGGVARMSDPALIEEIMDAVSIPVMAKCR------IGHTTE 88 (330)
T ss_dssp HHHHHHHHHHTCSEEEECSSC-------HHHHC-------CCCCCCCCHHHHHHHHHHCSSCEEEEEE------TTCHHH
T ss_pred HHHHHHHHHcCCCEEEecCCc-------cccccC-----CcchhhcCCHHHHHHHHHhcCCCeEEEEe------ecchHH
Confidence 689999999999999663222 111111 13321111145788888889999988643 343445
Q ss_pred HHHHHHcCCcEEEec------CC-----------Ch----hhHHHHHHHHHHcCCCeEEEeC------------------
Q 021527 160 MSTVRDIGIRGLVVP------DV-----------PL----EETESLQKEAMKNKIELVLFTT------------------ 200 (311)
Q Consensus 160 i~~~~~aGadGviip------Dl-----------p~----ee~~~~~~~~~~~gi~~I~lis------------------ 200 (311)
.+.+.+.|+|-+... |+ |+ .+..+....+ ..|.+.|-.-.
T Consensus 89 ~qilea~GaD~Id~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~ 167 (330)
T 2yzr_A 89 ALVLEAIGVDMIDESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMN 167 (330)
T ss_dssp HHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccCCCCcccchhHHHHHHHHH
Confidence 666777999998763 22 11 0233444444 55777664311
Q ss_pred -------CCChHHHHHHHHHhCCceEEE--E----ecCC------------ccCCCCCCCchHHHHHHHHhhcCCCcE--
Q 021527 201 -------PTTPTDRMKAIVEASEGFVYL--V----SSIG------------VTGARASISGHVQTLLREIKESSTKPV-- 253 (311)
Q Consensus 201 -------p~t~~eri~~i~~~a~gfiY~--v----s~~G------------~TG~~~~~~~~~~~~l~~vk~~~~~Pv-- 253 (311)
..+ ++.+...+. ..+..|+ + +..| .|.++...+....++++++++..++||
T Consensus 168 ~~~~~~s~~~-~~El~~~A~-~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IPVV~ 245 (330)
T 2yzr_A 168 EAIAQLQRMT-DEEVYGVAK-FYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVVN 245 (330)
T ss_dssp HHHHHHTTSC-HHHHHHHHH-HHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCSSEE
T ss_pred HHHHHhccCC-HHHHHHHHH-HcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCCeEE
Confidence 001 222211111 1233330 0 0012 122221111234488999988778998
Q ss_pred EEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 254 AVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 254 ~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+.-+||+|++|+.++.+.|||||.|||++.+.
T Consensus 246 VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a 277 (330)
T 2yzr_A 246 FAAGGVATPADAALMMQLGSDGVFVGSGIFKS 277 (330)
T ss_dssp EECSCCCSHHHHHHHHHTTCSCEEESHHHHTS
T ss_pred EEECCCCCHHHHHHHHHcCcCEEeeHHHHhcC
Confidence 58999999999999999999999999999973
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-07 Score=82.88 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=104.1
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH-HHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV-DNF 159 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~-~~f 159 (311)
+.++...+..++.+.+. +| ++.++-++++++++..+.+++-....+.+ +. +.-
T Consensus 20 ~~l~~al~s~~~~ifll--------~g---------------~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gl---s~d~~a 73 (192)
T 3kts_A 20 KDMEKILELDLTYMVML--------ET---------------HVAQLKALVKYAQAGGKKVLLHADLVNGL---KNDDYA 73 (192)
T ss_dssp HHHHHHTTSSCCEEEEC--------SE---------------ETTTHHHHHHHHHHTTCEEEEEGGGEETC---CCSHHH
T ss_pred HHHHHHHcCCCCEEEEe--------cC---------------cHHHHHHHHHHHHHcCCeEEEecCchhcc---CCcHHH
Confidence 56677777788998885 22 22234467778887777554432222211 11 223
Q ss_pred HHHHHH-cCCcEEEecCCChhhHHHHHHHHHHcCCCeEE--EeCCCChHHH-HHHHHHhCCceEEEEecCCccCCCCCCC
Q 021527 160 MSTVRD-IGIRGLVVPDVPLEETESLQKEAMKNKIELVL--FTTPTTPTDR-MKAIVEASEGFVYLVSSIGVTGARASIS 235 (311)
Q Consensus 160 i~~~~~-aGadGviipDlp~ee~~~~~~~~~~~gi~~I~--lisp~t~~er-i~~i~~~a~gfiY~vs~~G~TG~~~~~~ 235 (311)
++.+++ .++||+|=. .....+.+++.|+..|+ |+-.+..-++ ++.+.+....++-+.+ | ..
T Consensus 74 i~fL~~~~~pdGIIsT------k~~~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiLP--G-------i~ 138 (192)
T 3kts_A 74 IDFLCTEICPDGIIST------RGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLP--G-------II 138 (192)
T ss_dssp HHHHHHTTCCSEEEES------CHHHHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEEC--T-------TC
T ss_pred HHHHHhCCCCCEEEeC------cHHHHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEECC--c-------hh
Confidence 333334 589998655 23467788999998775 3333333233 4444444567765553 2 12
Q ss_pred chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 236 GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 236 ~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
.+.++++++.+++|+++|++|++.|++.+++++|||+|..|+.-+
T Consensus 139 ---p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~L 183 (192)
T 3kts_A 139 ---PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHL 183 (192)
T ss_dssp ---HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGG
T ss_pred ---HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHH
Confidence 268999999999999999999999999999999999999987643
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-07 Score=88.13 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCChHHHHHHHHHHHHcCCCHH----HHHHHHHHhhccCCCcE
Q 021527 78 TTAEALKLLDSCGSDIIELGV-----------PYSDPLADGPVIQAAATRSLARGTNFN----AILSMLKEVVPQMSCPI 142 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aDGp~Iq~a~~~Al~~G~~~~----~~~~~i~~ir~~~~iPi 142 (311)
.+.+.++.+.++|.|.|||-. |.++---| +.|-+++ -++++++.+|+.++.||
T Consensus 145 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D------------~yGGslenR~r~~~eiv~avr~~v~~pv 212 (340)
T 3gr7_A 145 AFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQD------------EYGGSPENRYRFLGEVIDAVREVWDGPL 212 (340)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCS------------TTSSSHHHHHHHHHHHHHHHHHHCCSCE
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCC------------cccCCHHHHHHHHHHHHHHHHHhcCCce
Confidence 688888999999999999941 44333233 1222333 34788888898889998
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-.-.+... + + ..+.++..++.+.+.+.|++.+-+....+... . .
T Consensus 213 ~vRls~~~~~--------~-------~-----g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~---------~-~---- 258 (340)
T 3gr7_A 213 FVRISASDYH--------P-------D-----GLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPA---------R-M---- 258 (340)
T ss_dssp EEEEESCCCS--------T-------T-----SCCGGGHHHHHHHHHHTTCCEEEEECCCSSCC---------C-C----
T ss_pred EEEecccccc--------C-------C-----CCCHHHHHHHHHHHHHcCCCEEEEecCCccCC---------C-C----
Confidence 8854222111 0 1 12456677777777788887776654322100 0 0
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..+ +....++++++|+.+++||++++||++++++.++++.| ||.|.+|++++.
T Consensus 259 ----~~~-----~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~la 312 (340)
T 3gr7_A 259 ----NVY-----PGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLR 312 (340)
T ss_dssp ----CCC-----TTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred ----CCC-----ccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHh
Confidence 001 11124678999998999999999999999999999999 999999999875
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=5.7e-07 Score=84.81 Aligned_cols=161 Identities=14% Similarity=0.167 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC---------CCcEEEEe
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM---------SCPIALFT 146 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~---------~iPiilm~ 146 (311)
.+.+.+.++.+.+ |+|+||+.+ +.|...|. +. +.+.+...++++.+|+.+ ++||++-.
T Consensus 152 ~~~~~~aa~~~~~-g~d~iein~--~sP~~~g~-------~~---~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi 218 (336)
T 1f76_A 152 KDDYLICMEKIYA-YAGYIAINI--SSPNTPGL-------RT---LQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI 218 (336)
T ss_dssp HHHHHHHHHHHGG-GCSEEEEEC--CCSSSTTG-------GG---GGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred HHHHHHHHHHHhc-cCCEEEEEc--cCCCCCCc-------cc---ccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEe
Confidence 4677788887766 999999974 45654441 11 223555667777777665 79999863
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
-.+ +..-...++++.+.++|+|+|++..-.... .++. .+ .....+ -|
T Consensus 219 ~~~-~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~----------~~~~-----~~-----------~~~~~~------gg 265 (336)
T 1f76_A 219 APD-LSEEELIQVADSLVRHNIDGVIATNTTLDR----------SLVQ-----GM-----------KNCDQT------GG 265 (336)
T ss_dssp CSC-CCHHHHHHHHHHHHHTTCSEEEECCCBCCC----------TTST-----TS-----------TTTTCS------SE
T ss_pred cCC-CCHHHHHHHHHHHHHcCCcEEEEeCCcccc----------cccc-----cc-----------cccccC------CC
Confidence 211 000012445667777888887776321100 0000 00 000000 01
Q ss_pred ccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+|. ...+...+.++++++.+ ++||+..+||++++++.+++..|||+|-+|++++.
T Consensus 266 ~~g~--~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 266 LSGR--PLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp EEEG--GGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred cCCc--hhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence 1221 11122346788898877 89999999999999999999999999999999875
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.3e-08 Score=94.76 Aligned_cols=179 Identities=17% Similarity=0.143 Sum_probs=108.0
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHH---HCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLD---SCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~---~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
.++.=|. |. +.+++.+.++.++ +.|+|+|||.+-. |...| .++| +.+.+.+.++++.+++.+++
T Consensus 128 pvivsI~-G~-~~~d~~~~a~~l~~~~~~g~d~ielNisC--Pn~~g-------g~~l--~~~~e~~~~il~av~~~~~~ 194 (354)
T 4ef8_A 128 PLFLSMS-GL-SMRENVEMCKRLAAVATEKGVILELNLSC--PNVPG-------KPQV--AYDFDAMRQCLTAVSEVYPH 194 (354)
T ss_dssp CEEEEEC-CS-SHHHHHHHHHHHHHHHHHHCCEEEEECSS--CCSTT-------SCCG--GGSHHHHHHHHHHHHHHCCS
T ss_pred cEEEEec-cC-CHHHHHHHHHHHhhhhhcCCCEEEEeCCC--CCCCC-------chhh--ccCHHHHHHHHHHHHHhhCC
Confidence 4444443 32 4578888888888 6899999997433 32222 0111 23456677888899988999
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcC-CcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIG-IRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aG-adGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
||.+-.-.+. ....+.++++.+.++| +|+|++..-. . .|+ .+...+..-+. ....++
T Consensus 195 PV~vKi~p~~-d~~~~~~~a~~~~~~Gg~d~I~~~NT~-~-----------~g~----~idi~~~~~~~----~~~~~~- 252 (354)
T 4ef8_A 195 SFGVKMPPYF-DFAHFDAAAEILNEFPKVQFITCINSI-G-----------NGL----VIDAETESVVI----KPKQGF- 252 (354)
T ss_dssp CEEEEECCCC-SHHHHHHHHHHHHTCTTEEEEEECCCE-E-----------EEE----CEETTTTEESC----SGGGGE-
T ss_pred CeEEEecCCC-CHHHHHHHHHHHHhCCCccEEEEeccc-C-----------cce----eeeccCCcccc----cccccc-
Confidence 9998753321 0111234455555776 8887664210 0 000 01100000000 000111
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
-|.+|. .+.+-..+++.++++.. ++||+..+||.|++++.+.+..|||+|.||++++.
T Consensus 253 -----gGlSG~--~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~ 311 (354)
T 4ef8_A 253 -----GGLGGR--YVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE 311 (354)
T ss_dssp -----EEEEGG--GGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHH
T ss_pred -----CCCCCC--CCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHH
Confidence 123332 23333457899998875 79999999999999999999999999999999986
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-08 Score=92.84 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=116.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCC--ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe-cCcch
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLA--DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT-YYNPI 151 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~a--DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~-Y~n~i 151 (311)
+.+..+++++.|+++|+|.||+|.|- .|-+ |+.. |- .. .+ .++++++..++++..|. ..| .
T Consensus 22 ~~~~k~~ia~~L~~aGv~~IEvg~~~-~p~~~f~~~~-~~---------~~-~e---~l~~i~~~~~~~~~~L~r~~~-~ 85 (320)
T 3dxi_A 22 NSKIVDAYILAMNELPIDYLEVGYRN-KPSKEYMGKF-GY---------TP-VS---VLKHLRNISTKKIAIMLNEKN-T 85 (320)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEEECC-SCCSSCCCHH-HH---------CC-HH---HHHHHHHHCCSEEEEEEEGGG-C
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccc-CCcccccccc-cc---------Ch-HH---HHHHHhhccCCeEEEEecCCC-C
Confidence 35778999999999999999999884 5633 3211 10 11 23 33444433567777765 334 1
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEEEe---CCCChH-HHHHHHHHhCCceEEEEecC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVLFT---TPTTPT-DRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~li---sp~t~~-eri~~i~~~a~gfiY~vs~~ 225 (311)
+..++++.. .+.++|+|.+.+.|-+. |+..+..+.++++|+++.+.+ +|.+++ .++..+.+...|. |.++..
T Consensus 86 ~~~dv~~~~-~a~~~Gvd~~ri~~~~~nle~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~G~-~~i~l~ 163 (320)
T 3dxi_A 86 TPEDLNHLL-LPIIGLVDMIRIAIDPQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEMNGFLSKLKAIDKIA-DLFCMV 163 (320)
T ss_dssp CGGGHHHHH-GGGTTTCSEEEEEECGGGHHHHHHHHHHHHTTTCEEEEEECCTTTGGGSTTSGGGGGGGTTTC-SEEEEE
T ss_pred ChhhHHHHH-HhhhcCCCEEEEEecHHHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCCHHHHHHHHHHhhCCC-CEEEEC
Confidence 122333322 22458999999987654 667778888999999877665 454443 3454444434452 334444
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCCCcEEEe----eCCCCHHHHHHHHHcCCcEE
Q 021527 226 GVTGARASISGHVQTLLREIKESSTKPVAVG----FGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG----fGIst~e~v~~v~~~GADGv 276 (311)
.++|.. .|..+.++++.+|+.+++|+-+- +|...+ +....+++|||.|
T Consensus 164 Dt~G~~--~P~~~~~lv~~l~~~~~~~i~~H~Hn~~G~a~a-n~laA~~aGa~~v 215 (320)
T 3dxi_A 164 DSFGGI--TPKEVKNLLKEVRKYTHVPVGFHGHDNLQLGLI-NSITAIDDGIDFI 215 (320)
T ss_dssp CTTSCC--CHHHHHHHHHHHHHHCCSCEEEECBCTTSCHHH-HHHHHHHTTCSEE
T ss_pred cccCCC--CHHHHHHHHHHHHHhCCCeEEEEeCCCCccHHH-HHHHHHHhCCCEE
Confidence 455652 46678899999999888999887 788754 4556677999966
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=9.4e-07 Score=83.77 Aligned_cols=154 Identities=14% Similarity=0.212 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE
Q 021527 77 STTAEALKLLDSCGSDIIELGV-----------PYSDPLAD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI 142 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi 142 (311)
+.+.+.++.+.++|.|+|||-. |.++---| |. +.+ +.+-.+++++.+|+.++.||
T Consensus 144 ~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGs-len----------r~r~~~eiv~avr~~v~~pv 212 (338)
T 1z41_A 144 QEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGS-PEN----------RYRFLREIIDEVKQVWDGPL 212 (338)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHH----------HHHHHHHHHHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcc-hhh----------hHHHHHHHHHHHHHHcCCcE
Confidence 4688889999999999999942 54432223 21 111 12345788888888889998
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-...+..... ....++..++.+.+.+.|++.+-+...+.. . ..+
T Consensus 213 ~vris~~~~~~~--------------------g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~--------~--~~~---- 258 (338)
T 1z41_A 213 FVRVSASDYTDK--------------------GLDIADHIGFAKWMKEQGVDLIDCSSGALV--------H--ADI---- 258 (338)
T ss_dssp EEEEECCCCSTT--------------------SCCHHHHHHHHHHHHHTTCCEEEEECCCSS--------C--CCC----
T ss_pred EEEecCcccCCC--------------------CCCHHHHHHHHHHHHHcCCCEEEEecCccc--------c--CCC----
Confidence 886422211110 123455666666667777776665443211 0 000
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..+ +....++++++|+.+++||++++||++++++.++++.| ||+|.+|++++.
T Consensus 259 ----~~~-----~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~ 312 (338)
T 1z41_A 259 ----NVF-----PGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLR 312 (338)
T ss_dssp ----CCC-----TTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred ----CCC-----ccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHh
Confidence 001 11124678889998899999999999999999999999 999999999976
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-06 Score=84.86 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=98.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcC--CCC------------CCCC------ChHHH--H-----HHH---HHHHHcCC
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGV--PYS------------DPLA------DGPVI--Q-----AAA---TRSLARGT 122 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~--Pfs------------DP~a------DGp~I--q-----~a~---~~Al~~G~ 122 (311)
..|.+.+.+.++..+++|++.|-+.+ |.. -|.. .+... + ... ..-+..-.
T Consensus 156 ~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~ 235 (392)
T 2nzl_A 156 YKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAI 235 (392)
T ss_dssp BSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHB
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcC
Confidence 45667888999999999999998843 331 1210 00000 0 000 00011000
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT 202 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~ 202 (311)
+.+...+.++++|+.+++||++-+..+ .+..+.+.++|+|+|++..-. |
T Consensus 236 d~~~~~~~i~~lr~~~~~PvivKgv~~-------~e~A~~a~~aGad~I~vs~~g--------------g---------- 284 (392)
T 2nzl_A 236 DPSISWEDIKWLRRLTSLPIVAKGILR-------GDDAREAVKHGLNGILVSNHG--------------A---------- 284 (392)
T ss_dssp CTTCCHHHHHHHC--CCSCEEEEEECC-------HHHHHHHHHTTCCEEEECCGG--------------G----------
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEecCC-------HHHHHHHHHcCCCEEEeCCCC--------------C----------
Confidence 111124578899998999999975421 456888899999999884211 0
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
|. . ..| ++ ..+.+.++++.+ ++||++.+||++++|+.+++..|||+|.||+
T Consensus 285 ----r~---------------~--~~g-----~~-~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr 337 (392)
T 2nzl_A 285 ----RQ---------------L--DGV-----PA-TIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGR 337 (392)
T ss_dssp ----TS---------------S--TTC-----CC-HHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred ----Cc---------------C--CCC-----cC-hHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECH
Confidence 00 0 001 11 235566776654 5999999999999999999999999999999
Q ss_pred Hhhchhh
Q 021527 281 AMVKLLG 287 (311)
Q Consensus 281 aiv~~~~ 287 (311)
+++..+.
T Consensus 338 ~~l~~~~ 344 (392)
T 2nzl_A 338 PIVWGLA 344 (392)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-08 Score=89.87 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=103.4
Q ss_pred CCCCChhhHHHHHHHHHHCC--CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 71 AGDPDLSTTAEALKLLDSCG--SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~G--aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+..++++. .++.+++.| +|++++|+++ . +.. ..+.++.+|+. +.++++..-.
T Consensus 21 lD~~~l~~---~~~~~~~~~~~v~~~Kv~~d~---------~-------~~~------G~~~v~~lr~~-~~~v~lD~kl 74 (245)
T 1eix_A 21 LDYHNRDD---ALAFVDKIDPRDCRLKVGKEM---------F-------TLF------GPQFVRELQQR-GFDIFLDLKF 74 (245)
T ss_dssp ECCSSHHH---HHHHHTTSCTTTCEEEEEHHH---------H-------HHH------HHHHHHHHHHT-TCCEEEEEEE
T ss_pred ECCCCHHH---HHHHHHHhCccCcEEEEcHHH---------H-------HHh------CHHHHHHHHHC-CCcEEEEeec
Confidence 33445554 555555566 8999998665 1 111 24577777765 4455555433
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCC-Ce-EEEeCCCCh--HHHHHHHHHhCC--ceEEE
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKI-EL-VLFTTPTTP--TDRMKAIVEASE--GFVYL 221 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi-~~-I~lisp~t~--~eri~~i~~~a~--gfiY~ 221 (311)
..+-.+ ..++++.+.++|+|.+.++=..-.+ ...+.+.++++|. .. ++.+++.|+ .+.++.+.-... ..+..
T Consensus 75 ~Dip~t-~~~~i~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~G~~~~~~l~v~~~ts~~~~~l~~~~~~~~~~d~Vl~ 153 (245)
T 1eix_A 75 HDIPNT-AAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAER 153 (245)
T ss_dssp CSCHHH-HHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCCSCHHHHHHH
T ss_pred cccHHH-HHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHhccCCCHHHHHHH
Confidence 222111 2357888899999999997332233 5567778888887 43 444554443 233322100000 00100
Q ss_pred Eec----CCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHH-----------HHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSS----IGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPE-----------HVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~----~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e-----------~v~~v~~~GADGvIVGSaiv~ 284 (311)
++. .|..| +-.+..+ ++++|+.. +.++.|-.||+ ++ ++.++.++|||.+|||+++.+
T Consensus 154 ma~~~~~~G~~g----~V~~~~e-i~~lr~~~~~~~i~v~gGI~-~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~ 226 (245)
T 1eix_A 154 LAALTQKCGLDG----VVCSAQE-AVRFKQVFGQEFKLVTPGIR-PQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQ 226 (245)
T ss_dssp HHHHHHHTTCSE----EECCGGG-HHHHHHHHCSSSEEEECCBC-CTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHT
T ss_pred HHHHHHHcCCCe----EEeCHHH-HHHHHHhcCCCCEEEECCcC-CCCCCccchhccCCHHHHHHcCCCEEEECHHHcC
Confidence 111 12111 1111124 66666654 46899999997 46 688899999999999999997
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-07 Score=93.80 Aligned_cols=139 Identities=18% Similarity=0.170 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~ 156 (311)
...+.++.|.++|+|.|+++.. +| ....+++.++++++.. ++|+++.... .
T Consensus 256 d~~era~aLveaGvd~I~Id~a------~g---------------~~~~v~~~i~~i~~~~~~~~vi~g~v~-------t 307 (511)
T 3usb_A 256 DAMTRIDALVKASVDAIVLDTA------HG---------------HSQGVIDKVKEVRAKYPSLNIIAGNVA-------T 307 (511)
T ss_dssp THHHHHHHHHHTTCSEEEEECS------CT---------------TSHHHHHHHHHHHHHCTTSEEEEEEEC-------S
T ss_pred chHHHHHHHHhhccceEEeccc------cc---------------chhhhhhHHHHHHHhCCCceEEeeeec-------c
Confidence 4678899999999999999833 22 1134567889998875 5788864322 2
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+..+.+.++|+|++.+. ..... ..++ |. .+|. +.+.
T Consensus 308 ~e~a~~~~~aGad~i~vg-~g~gs--------------------i~~~--~~------------------~~g~--g~p~ 344 (511)
T 3usb_A 308 AEATKALIEAGANVVKVG-IGPGS--------------------ICTT--RV------------------VAGV--GVPQ 344 (511)
T ss_dssp HHHHHHHHHHTCSEEEEC-SSCST--------------------TCCH--HH------------------HHCC--CCCH
T ss_pred HHHHHHHHHhCCCEEEEC-CCCcc--------------------cccc--cc------------------ccCC--CCCc
Confidence 457888999999998752 21110 0111 11 0111 1111
Q ss_pred -hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 237 -HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 237 -~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.....+.++.+..++||++.+||++++++.+++.+|||+|.+||+|....+
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~~~e 396 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAE 396 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhcCcc
Confidence 111123333334579999999999999999999999999999999977664
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-08 Score=88.98 Aligned_cols=175 Identities=12% Similarity=0.073 Sum_probs=103.5
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+.+..+++++..+.++.+.. -+.++++| ||-+ +..|. +.++++|+..+.++++....
T Consensus 4 la~D~~~l~~~~~~~~~~~~-~~~~~kv~--------~~~f--------~~~G~------~~i~~lr~~~~~~v~~D~kl 60 (208)
T 2czd_A 4 LALDVYEGERAIKIAKSVKD-YISMIKVN--------WPLI--------LGSGV------DIIRRLKEETGVEIIADLKL 60 (208)
T ss_dssp EECCCCSHHHHHHHHHHHGG-GCSEEEEE--------HHHH--------HHHCT------THHHHHHHHHCCEEEEEEEE
T ss_pred EEecCCCHHHHHHHHHHhcc-cccEEEec--------HHHH--------HhhCH------HHHHHHHHcCCCEEEEEeee
Confidence 45566777777777766532 25566676 4433 22343 35666776535566666544
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHH--------HHHHHH--hCCce
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDR--------MKAIVE--ASEGF 218 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~~--~a~gf 218 (311)
.++..+ .+++++.+.++|+|.+.++=..-. ...+.+++.+ -+.+.. .|+.+. ...++. ...||
T Consensus 61 ~DI~~t-~~~~v~~~~~~Gad~vtvh~~~g~---~~i~~~~~~~--gv~vl~-~t~~~~~~~~~~~~v~~~~~~a~~~G~ 133 (208)
T 2czd_A 61 ADIPNT-NRLIARKVFGAGADYVIVHTFVGR---DSVMAVKELG--EIIMVV-EMSHPGALEFINPLTDRFIEVANEIEP 133 (208)
T ss_dssp CSCHHH-HHHHHHHHHHTTCSEEEEESTTCH---HHHHHHHTTS--EEEEEC-CCCSGGGGTTTGGGHHHHHHHHHHHCC
T ss_pred CchHHH-HHHHHHHHHhcCCCEEEEeccCCH---HHHHHHHHhC--CcEEEE-ecCCcchhhHHHHHHHHHHHHHHHhCC
Confidence 433322 367889999999999988632222 2355566665 333332 232211 111112 12355
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHH--HHHHHHHcCCcEEEEhhHhhch
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPE--HVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e--~v~~v~~~GADGvIVGSaiv~~ 285 (311)
...+. +.+ ..+.++++|+..+ .++++-+||+. + ++.++.+.|||++||||++.+.
T Consensus 134 ~G~~~--~~~---------~~~~i~~lr~~~~~~~~iv~gGI~~-~g~~~~~~~~aGad~vvvGr~I~~a 191 (208)
T 2czd_A 134 FGVIA--PGT---------RPERIGYIRDRLKEGIKILAPGIGA-QGGKAKDAVKAGADYIIVGRAIYNA 191 (208)
T ss_dssp SEEEC--CCS---------STHHHHHHHHHSCTTCEEEECCCCS-STTHHHHHHHHTCSEEEECHHHHTS
T ss_pred cEEEE--CCC---------ChHHHHHHHHhCCCCeEEEECCCCC-CCCCHHHHHHcCCCEEEEChHHhcC
Confidence 44431 111 1244677777664 36779999984 4 7999999999999999999973
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=90.24 Aligned_cols=177 Identities=17% Similarity=0.185 Sum_probs=109.8
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCC-EEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSD-IIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD-~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
..++.=|. | -+.+++.+.++.+++.|+| +|||.+ |-|...|- ++| +.+.+.+.++++.+|+.+++|
T Consensus 129 ~pvivsI~-g-~~~~d~~~~a~~l~~~g~~d~ielNi--sCPn~~G~-------~~l--~~~~e~l~~il~av~~~~~~P 195 (345)
T 3oix_A 129 KNHFLSLV-G-MSPEETHTILXMVEASKYQGLVELNL--SCPNVPGX-------PQI--AYDFETTDQILSEVFTYFTKP 195 (345)
T ss_dssp CCCEEEEC-C-SSHHHHHHHHHHHHHSSCCSEEEEEC--SCCCSTTC-------CCG--GGCHHHHHHHHHHHTTTCCSC
T ss_pred CCEEEEec-C-CCHHHHHHHHHHHhccCCCcEEEEec--CCCCcCCc-------hhh--cCCHHHHHHHHHHHHHHhCCC
Confidence 34554443 3 4568999999999999987 999974 33433230 122 345567788999999989999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.| ....++.+.+.++|++++...... +.+..-+.+...++. + ....++
T Consensus 196 V~vKi~p~----~~~~~~a~~~~~aga~~i~~int~-------------nt~g~~~~i~~~~~~-----~-~~~~~~--- 249 (345)
T 3oix_A 196 LGIKLPPY----FDIVHFDQAAAIFNXYPLTFVNCI-------------NSIGNGLVIEDETVV-----I-XPKNGF--- 249 (345)
T ss_dssp EEEEECCC----CCHHHHHHHHHHHTTSCCSEEEEC-------------CCEEEEECEETTEES-----C-SGGGGE---
T ss_pred eEEEECCC----CCHHHHHHHHHHhCCCceEEEEee-------------cccccceeeccCccc-----c-cccccc---
Confidence 99875433 245667777777777664211000 000000001100000 0 000010
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
-|.+|. .+.+-..+++.++++.+ ++||+..+||.|++++.+.+..|||+|.||+++.
T Consensus 250 ---gGlSG~--ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~ 308 (345)
T 3oix_A 250 ---GGIGGD--YVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALH 308 (345)
T ss_dssp ---EEEEEG--GGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred ---CCcCCc--cccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHH
Confidence 023332 22233357899999988 7999999999999999999999999999999954
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-07 Score=88.31 Aligned_cols=135 Identities=22% Similarity=0.280 Sum_probs=92.0
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.++|+|+|+++.-+.+| +.+.+.++++++.+++|+++-.- ...+.
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~~---------------------~~~~e~I~~ik~~~~i~Vi~g~V-------~t~e~ 197 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGHS---------------------LNIIRTLKEIKSKMNIDVIVGNV-------VTEEA 197 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCSB---------------------HHHHHHHHHHHTTCCCEEEEEEE-------CSHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCc---------------------ccHHHHHHHHHhcCCCeEEEeec-------CCHHH
Confidence 588999999999999997555433 23457888998888889886321 12467
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQ 239 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~ 239 (311)
++.+.++|+|+|++. . +. | .+. ++ | . .+|. +.+ ..
T Consensus 198 A~~a~~aGAD~I~vG-~--g~-----------G--s~~----~t---r-----~-------------~~g~--g~p--~~ 232 (400)
T 3ffs_A 198 TKELIENGADGIKVG-I--GP-----------G--SIC----TT---R-----I-------------VAGV--GVP--QI 232 (400)
T ss_dssp HHHHHHTTCSEEEEC-C------------------------------------C-------------CSCB--CCC--HH
T ss_pred HHHHHHcCCCEEEEe-C--CC-----------C--cCc----cc---c-----c-------------cccc--chh--HH
Confidence 788889999998873 1 10 1 000 00 0 0 0111 011 12
Q ss_pred HHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 240 TLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 240 ~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
..+.++++ ..++||++.+||.+++++.+++.+|||+|.+||+|...-+
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~E 283 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEE 283 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBTT
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCCC
Confidence 34444443 3589999999999999999999999999999999998765
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.5e-07 Score=81.67 Aligned_cols=150 Identities=18% Similarity=0.255 Sum_probs=98.4
Q ss_pred HHHHhhccCCCcEEEEe-cC--cchhccCHHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcCCCeEEEeCCC
Q 021527 130 MLKEVVPQMSCPIALFT-YY--NPILKRGVDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNKIELVLFTTPT 202 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~-Y~--n~i~~~g~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~gi~~I~lisp~ 202 (311)
.+..+++.+++|+.--- ++ +.-|.. +--+..+++.|+|.+++.. +.+.|..+..+.+.++|+++++-+..+
T Consensus 50 ~L~~v~~~~~i~v~aQdv~~~~~Ga~TG--eis~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVge~ 127 (225)
T 1hg3_A 50 DLRMIAESVEIPVFAQHIDPIKPGSHTG--HVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSNNP 127 (225)
T ss_dssp HHHHHHHSCSSCBEESCCCSCCSBSCTT--CCCHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred HHHHHHHhcCCceeeeeCCcccCCCccC--cccHHHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45555666678865521 11 111111 1135678999999999975 666788888999999999987766532
Q ss_pred ChHHHHHHHHHhCCceEEEEec--CCccCCC-CCCCch-HHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 203 TPTDRMKAIVEASEGFVYLVSS--IGVTGAR-ASISGH-VQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~--~G~TG~~-~~~~~~-~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
.++ +.+.......|-+-.+ .| ||.. ....++ ..+..+.+|+.. +++++.|+||++++++..+...|+||+-
T Consensus 128 -~e~--~~~~~~~~~iIayep~waiG-tG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~L 203 (225)
T 1hg3_A 128 -AVS--AAVAALNPDYVAVEPPELIG-TGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVL 203 (225)
T ss_dssp -HHH--HHHHTTCCSEEEECCTTTTT-TSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred -HHH--HHHhcCCCCEEEEeChhhhc-cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEE
Confidence 222 2232333334444332 33 5611 122333 666666666654 6899999999999999999999999999
Q ss_pred EhhHhhch
Q 021527 278 VGSAMVKL 285 (311)
Q Consensus 278 VGSaiv~~ 285 (311)
||+++++.
T Consensus 204 VG~a~l~a 211 (225)
T 1hg3_A 204 LASGVTKA 211 (225)
T ss_dssp ESHHHHTC
T ss_pred eCHHHHCC
Confidence 99999984
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-06 Score=84.60 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=98.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcC--CCC------------CCCCC--hHHHHHHHHH-HHHcCCCH----------HHH
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGV--PYS------------DPLAD--GPVIQAAATR-SLARGTNF----------NAI 127 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~--Pfs------------DP~aD--Gp~Iq~a~~~-Al~~G~~~----------~~~ 127 (311)
|.+...+.++.++++|++.|++.+ |+. .|..- +-+++..... +...|..+ ...
T Consensus 134 d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~ 213 (370)
T 1gox_A 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLS 213 (370)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCC
T ss_pred CchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccch
Confidence 446778999999999999999953 322 23211 0111100000 00011111 112
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHH
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDR 207 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~er 207 (311)
.+.++++++.+++|+++-+-.+ .+.++.+.++|+|+|.+..-. | |
T Consensus 214 ~~~i~~l~~~~~~pv~vK~~~~-------~e~a~~a~~~Gad~I~vs~~g--------------g--------------r 258 (370)
T 1gox_A 214 WKDVAWLQTITSLPILVKGVIT-------AEDARLAVQHGAAGIIVSNHG--------------A--------------R 258 (370)
T ss_dssp HHHHHHHHHHCCSCEEEECCCS-------HHHHHHHHHTTCSEEEECCGG--------------G--------------T
T ss_pred HHHHHHHHHHhCCCEEEEecCC-------HHHHHHHHHcCCCEEEECCCC--------------C--------------c
Confidence 3568888888899998844221 356788889999998874210 0 0
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
. ..+ | ++ ..+.+.++++.+ ++||++.+||++++|+.+++..|||+|.||++++..
T Consensus 259 ~---------------~~~--~-----~~-~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~ 315 (370)
T 1gox_A 259 Q---------------LDY--V-----PA-TIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFS 315 (370)
T ss_dssp S---------------STT--C-----CC-HHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred c---------------CCC--c-----cc-HHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHH
Confidence 0 001 1 12 345677777766 799999999999999999999999999999999986
Q ss_pred hh
Q 021527 286 LG 287 (311)
Q Consensus 286 ~~ 287 (311)
+.
T Consensus 316 ~~ 317 (370)
T 1gox_A 316 LA 317 (370)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-06 Score=80.31 Aligned_cols=185 Identities=18% Similarity=0.204 Sum_probs=116.2
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe-----
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT----- 146 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~----- 146 (311)
+.|+.+...+..+...+.|++.+-+- | | +++..+ -.++++++-.
T Consensus 36 ~~~~~~di~~~~~~a~~~~~~av~v~-----~---~----------------------~v~~~~-~~~~~liv~~~~~~~ 84 (263)
T 1w8s_A 36 DNPDSADPEYILRLARDAGFDGVVFQ-----R---G----------------------IAEKYY-DGSVPLILKLNGKTT 84 (263)
T ss_dssp SSGGGGCHHHHHHHHHHHTCSEEEEC-----H---H----------------------HHHHHC-CSSSCEEEECEECCT
T ss_pred cCcchhhHHHHHHHHHhhCCCEEEEC-----H---H----------------------HHHHhh-cCCCcEEEEEeCCCC
Confidence 44577888999999999999999884 1 1 232322 2345655421
Q ss_pred --cCcchhccCHHHHHHHHHHcCCcEEEec----CCCh----hhHHHHHHHHHHcCCCeEEEeCCC--------ChHHHH
Q 021527 147 --YYNPILKRGVDNFMSTVRDIGIRGLVVP----DVPL----EETESLQKEAMKNKIELVLFTTPT--------TPTDRM 208 (311)
Q Consensus 147 --Y~n~i~~~g~~~fi~~~~~aGadGviip----Dlp~----ee~~~~~~~~~~~gi~~I~lisp~--------t~~eri 208 (311)
..++-. ....-++.+.+.|+|.+-+. +... ++..++++.|+++|+.+|....+. ++ +.+
T Consensus 85 ~~g~~~~~--~~~~~ve~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~-~~i 161 (263)
T 1w8s_A 85 LYNGEPVS--VANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAP-EIV 161 (263)
T ss_dssp TCCSSCCC--EESSCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCH-HHH
T ss_pred cCCCCccc--hHHHHHHHHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCH-HHH
Confidence 111111 01124677889999998663 2222 346678888999999987765551 33 333
Q ss_pred HHHHH--hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCC-cEEEeeCCC--CHHHHHHHH----HcCCcEEEEh
Q 021527 209 KAIVE--ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAVGFGIS--KPEHVQQVA----GWGADGVIVG 279 (311)
Q Consensus 209 ~~i~~--~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~-Pv~vGfGIs--t~e~v~~v~----~~GADGvIVG 279 (311)
...++ ...|..|+-+. ++| . .+.++++++.+++ ||.+-+||+ +.+++.+.. +.||+|+.+|
T Consensus 162 ~~a~~~a~~~GAD~vkt~--~~~-------~-~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvg 231 (263)
T 1w8s_A 162 AYAARIALELGADAMKIK--YTG-------D-PKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVG 231 (263)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCS-------S-HHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHcCCCEEEEc--CCC-------C-HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 22222 23466677432 222 1 2568888877777 999999999 777665555 9999999999
Q ss_pred hHhhchhhhcCCchhHHHHHHHHHH
Q 021527 280 SAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 280 Saiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+++.+. .++....+++.+.++
T Consensus 232 raI~~~----~dp~~~~~~l~~~v~ 252 (263)
T 1w8s_A 232 RNVWQR----RDALKFARALAELVY 252 (263)
T ss_dssp HHHHTS----TTHHHHHHHHHHHHC
T ss_pred hhhcCC----cCHHHHHHHHHHHHh
Confidence 999974 235555555555543
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.4e-07 Score=89.92 Aligned_cols=138 Identities=20% Similarity=0.210 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~ 156 (311)
...+.++.+.++|+|.||++..+.+| +..++.++++++.+ ++|+++..- ..
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~G~~---------------------~~~~~~i~~i~~~~~~~pvi~~~v-------~t 306 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQGNS---------------------VYQIAMVHYIKQKYPHLQVIGGNV-------VT 306 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCCS---------------------HHHHHHHHHHHHHCTTCEEEEEEE-------CS
T ss_pred hhHHHHHHHHHcCCCEEEeeccCCcc---------------------hhHHHHHHHHHHhCCCCceEeccc-------ch
Confidence 46788889999999999997655443 22356888888887 899886322 12
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+.++.+.++|+|++.+.--+ | -+ . ++ | ...| .|.. ..
T Consensus 307 ~~~a~~l~~aGad~I~vg~~~--------------G--~~---~-~t---~---------------~~~~-~g~~---~~ 344 (514)
T 1jcn_A 307 AAQAKNLIDAGVDGLRVGMGC--------------G--SI---C-IT---Q---------------EVMA-CGRP---QG 344 (514)
T ss_dssp HHHHHHHHHHTCSEEEECSSC--------------S--CC---B-TT---B---------------CCCS-CCCC---HH
T ss_pred HHHHHHHHHcCCCEEEECCCC--------------C--cc---c-cc---c---------------cccC-CCcc---ch
Confidence 456888899999999883101 1 00 0 01 0 0001 1110 12
Q ss_pred hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 237 HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 237 ~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
...+.+.++++..++||++.+||++++++.+++..|||+|.+|++|...
T Consensus 345 ~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~ 393 (514)
T 1jcn_A 345 TAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAAT 393 (514)
T ss_dssp HHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTS
T ss_pred hHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcC
Confidence 2346788888888999999999999999999999999999999999764
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-07 Score=83.51 Aligned_cols=188 Identities=14% Similarity=0.133 Sum_probs=107.5
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+-+..+++++..+.++.+. ..+|++++|+++ . +..| .+.++.+|+. +.++++..-+
T Consensus 9 lalD~~~l~~~~~~v~~~~-~~v~~~Kv~~d~---------~-------~~~G------~~~v~~lr~~-~~~v~lD~kl 64 (246)
T 2yyu_A 9 VALDFPSKQEVERFLRPFA-GTPLFVKVGMEL---------Y-------YQEG------PAIVAFLKEQ-GHAVFLDLKL 64 (246)
T ss_dssp EECCCSSHHHHHHHHGGGT-TSCCEEEECHHH---------H-------HHHT------HHHHHHHHHT-TCEEEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhc-ccccEEEeCHHH---------H-------HHhC------HHHHHHHHHC-CCeEEEEeec
Confidence 4556667766555555441 227999998665 1 2223 3467777765 4566665533
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHH---cCCC--eEEEeCCCChH--HHH-HHHHHhCC--c
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMK---NKIE--LVLFTTPTTPT--DRM-KAIVEASE--G 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~---~gi~--~I~lisp~t~~--eri-~~i~~~a~--g 217 (311)
..+-.+ ...+++.+.+.|+|.+.++=..-.+ ..++.+.+++ +|.+ .++.++|.|+. +.+ +.+.-... .
T Consensus 65 ~Dip~t-~~~~~~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~~~~G~~~~~~lav~~~Ts~~~~~l~~~~~~~~~~~d 143 (246)
T 2yyu_A 65 HDIPNT-VKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVE 143 (246)
T ss_dssp CSCHHH-HHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHHHSCSSSCCCEEEEESSCTTCCHHHHHHTSCCCSCHHH
T ss_pred ccchHH-HHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHhhcccCCcCCCEEEEEeCCCCCHHHHHHHhcCCCCHHH
Confidence 322111 2347888899999999997332233 4567778887 7854 24556766662 333 22100000 0
Q ss_pred eEEEEecC-CccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHH-----------HHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSI-GVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPE-----------HVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~-G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e-----------~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+..++.. .-.|.. ++-.+..+ ++++|+.. ..++.|-.||+ ++ ++.++.++|||.+|||+++.+
T Consensus 144 ~Vl~ma~~~~~~G~~-g~V~~~~e-i~~lr~~~~~~~i~V~gGI~-~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~ 220 (246)
T 2yyu_A 144 TVAHYAALAKESGLD-GVVCSANE-AAFIKERCGASFLAVTPGIR-FADDAAHDQVRVVTPRKARALGSDYIVIGRSLTR 220 (246)
T ss_dssp HHHHHHHHHHHHTCC-EEECCHHH-HHHHHHHHCTTSEEEECCCC-CCC-------CCCCHHHHHHHTCSEEEECHHHHT
T ss_pred HHHHHHHHHHHhCCC-EEEeCHHH-HHHHHHhcCCCCEEEeCCcC-CCCCCcccccccCCHHHHHHcCCCEEEECHhhcC
Confidence 01011110 001111 11122234 77777765 35689999997 35 688888999999999999997
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=98.63 E-value=6.5e-08 Score=93.10 Aligned_cols=164 Identities=19% Similarity=0.259 Sum_probs=97.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc----cCCCcEEEEecCcch
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP----QMSCPIALFTYYNPI 151 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~----~~~iPiilm~Y~n~i 151 (311)
.++..+.++.+.+ ++|+|||.+ |-|-..|- +.++..-.+.++++.+++.++ ..++||.+-.-.+.-
T Consensus 163 ~~dy~~~~~~~~~-~ad~ielNi--sCPn~~G~-------~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~ 232 (367)
T 3zwt_A 163 AEDYAEGVRVLGP-LADYLVVNV--SSPNTAGL-------RSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLT 232 (367)
T ss_dssp HHHHHHHHHHHGG-GCSEEEEEC--CCTTSTTG-------GGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCC
T ss_pred HHHHHHHHHHHhh-hCCEEEEEC--CCCCCCCc-------cccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCC
Confidence 4667777777765 699999975 44544441 112221123344444444332 267999987533210
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR 231 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~ 231 (311)
.-.+.++++.+.++|+|||++..-.... .+. ..|. . ....| |.+|.
T Consensus 233 -~~~~~~ia~~~~~aGadgi~v~ntt~~r----------~~~-----~~~~--------~-~~~~g--------GlSG~- 278 (367)
T 3zwt_A 233 -SQDKEDIASVVKELGIDGLIVTNTTVSR----------PAG-----LQGA--------L-RSETG--------GLSGK- 278 (367)
T ss_dssp -HHHHHHHHHHHHHHTCCEEEECCCBSCC----------CTT-----CCCT--------T-TTSSS--------EEEEG-
T ss_pred -HHHHHHHHHHHHHcCCCEEEEeCCCccc----------ccc-----cccc--------c-ccccC--------CcCCc-
Confidence 0013456667777788887766322110 000 0000 0 00011 22332
Q ss_pred CCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 232 ASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+...+.++++++.+ ++||+..+||.|++++.+.+..|||+|.|||+++.
T Consensus 279 -~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~ 332 (367)
T 3zwt_A 279 -PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF 332 (367)
T ss_dssp -GGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred -ccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 22233457899999988 89999999999999999999999999999999963
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-07 Score=87.95 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~ 156 (311)
.+.+.++.+.++|+|.|++..++.|| +...+.++++|+.+ ++||++-+- ..
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~g~~---------------------~~~~e~i~~ir~~~~~~pviv~~v-------~~ 204 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAHGHS---------------------TRIIELIKKIKTKYPNLDLIAGNI-------VT 204 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSS---------------------HHHHHHHHHHHHHCTTCEEEEEEE-------CS
T ss_pred hHHHHHHHHHHCCCCEEEEeCCCCCh---------------------HHHHHHHHHHHHHCCCCeEEEcCC-------Cc
Confidence 46777888899999999997555443 23456788888877 899887221 11
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+.++.+.++|+|+|++. .-. |- + .+ .+ .. . |. |.. ..
T Consensus 205 ~~~a~~a~~~Gad~I~vg-~~~-------------G~-----~--~~--~~--~~-~------------~~-g~p---~~ 242 (404)
T 1eep_A 205 KEAALDLISVGADCLKVG-IGP-------------GS-----I--CT--TR--IV-A------------GV-GVP---QI 242 (404)
T ss_dssp HHHHHHHHTTTCSEEEEC-SSC-------------ST-----T--SH--HH--HH-H------------CC-CCC---HH
T ss_pred HHHHHHHHhcCCCEEEEC-CCC-------------Cc-----C--cC--cc--cc-C------------CC-Ccc---hH
Confidence 457888889999999883 200 10 0 00 11 00 0 11 111 01
Q ss_pred hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 237 HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 237 ~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.....+.++.+..++||++.+||++++++.+++..|||+|.+|++|...
T Consensus 243 ~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~ 291 (404)
T 1eep_A 243 TAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT 291 (404)
T ss_dssp HHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTB
T ss_pred HHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcC
Confidence 1123344444456899999999999999999999999999999999754
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-06 Score=82.43 Aligned_cols=153 Identities=17% Similarity=0.176 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHCCCCEEEEc--C---------CCCCCCCChHHHHHHHHHHHHcCCCHH----HHHHHHHHhhccC--CC
Q 021527 78 TTAEALKLLDSCGSDIIELG--V---------PYSDPLADGPVIQAAATRSLARGTNFN----AILSMLKEVVPQM--SC 140 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG--~---------PfsDP~aDGp~Iq~a~~~Al~~G~~~~----~~~~~i~~ir~~~--~i 140 (311)
.+.+.++.+.++|.|+|||- . |.++---| +.|-+++ -.+++++.+|+.+ +.
T Consensus 153 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D------------~yGGslenR~r~~~eiv~aVR~avG~d~ 220 (349)
T 3hgj_A 153 AFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTD------------AYGGSLENRMRFPLQVAQAVREVVPREL 220 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCS------------TTSSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCC------------CCCcCHHHHHHHHHHHHHHHHHHhcCCc
Confidence 57888889999999999993 2 44322222 1233333 3477888888876 78
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
||.+-.-.+.... .....++..++.+.+.+.|++.+-+....+... ..++
T Consensus 221 pV~vRls~~~~~~--------------------~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~----------~~~~ 270 (349)
T 3hgj_A 221 PLFVRVSATDWGE--------------------GGWSLEDTLAFARRLKELGVDLLDCSSGGVVLR----------VRIP 270 (349)
T ss_dssp CEEEEEESCCCST--------------------TSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSS----------SCCC
T ss_pred eEEEEeccccccC--------------------CCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcc----------cccC
Confidence 8887532211100 123446666677777777777666553221100 0000
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.+ +....++++++|+.+++||++++||++++++.++++.| ||.|.+|++++.
T Consensus 271 -------~~-----~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~la 323 (349)
T 3hgj_A 271 -------LA-----PGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLR 323 (349)
T ss_dssp -------CC-----TTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred -------CC-----ccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHh
Confidence 00 11124678899998899999999999999999999999 999999999885
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.3e-07 Score=85.73 Aligned_cols=156 Identities=21% Similarity=0.213 Sum_probs=98.6
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEc--CCC------------CCCCCChHHHHHH-----HHHHH---HcCCCHHHHHHH
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELG--VPY------------SDPLADGPVIQAA-----ATRSL---ARGTNFNAILSM 130 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG--~Pf------------sDP~aDGp~Iq~a-----~~~Al---~~G~~~~~~~~~ 130 (311)
..|.+.+.+.++..+++|++.|.|. .|. ..|+. -..+... .-.++ ..-.+.....+.
T Consensus 142 ~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~-~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~ 220 (368)
T 2nli_A 142 AKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFG-MPIVQRYLRGTAEGMSLNNIYGASKQKISPRD 220 (368)
T ss_dssp BSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSC-CHHHHHHHTTSGGGC-----CTTBCSBCCHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcch-hhhhhcccccCCCCchHHhhhhccCchhhHHH
Confidence 4466888899999999999998874 333 12310 0111100 00000 000011122456
Q ss_pred HHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHH
Q 021527 131 LKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 131 i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~ 210 (311)
++++|+.+++|+++-+.. ..+..+.+.++|+|+|++..-. | |
T Consensus 221 i~~lr~~~~~PvivK~v~-------~~e~a~~a~~~Gad~I~vs~~g--------------g--------------r--- 262 (368)
T 2nli_A 221 IEEIAGHSGLPVFVKGIQ-------HPEDADMAIKRGASGIWVSNHG--------------A--------------R--- 262 (368)
T ss_dssp HHHHHHHSSSCEEEEEEC-------SHHHHHHHHHTTCSEEEECCGG--------------G--------------T---
T ss_pred HHHHHHHcCCCEEEEcCC-------CHHHHHHHHHcCCCEEEEcCCC--------------c--------------C---
Confidence 888888888999886532 1456778888888888775311 0 0
Q ss_pred HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 211 i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
. . .+| ++ ..+.+.++++.. ++||++.+||++++|+.+++..|||+|-||+.+...+.
T Consensus 263 -----~-------~--~~g-----~~-~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~ 321 (368)
T 2nli_A 263 -----Q-------L--YEA-----PG-SFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLA 321 (368)
T ss_dssp -----S-------C--SSC-----CC-HHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred -----C-------C--CCC-----CC-hHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 0 0 011 11 235677777655 69999999999999999999999999999999998764
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-06 Score=82.36 Aligned_cols=176 Identities=15% Similarity=0.134 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc--CCCC------------CC------CCChH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG--VPYS------------DP------LADGP 108 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG--~Pfs------------DP------~aDGp 108 (311)
.+++..... ..+...|-.|+ ..|.+.+.+.++..+++|+..|-+- .|.. -| ...++
T Consensus 111 s~e~v~~~~-~~~~~wfQlY~---~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~ 186 (352)
T 3sgz_A 111 SLEDIVAAA-PEGFRWFQLYM---KSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRAL 186 (352)
T ss_dssp CHHHHHHHS-TTCEEEEECCC---CSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---
T ss_pred CHHHHHHhc-cCccceecccc---CCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhccc
Confidence 355555431 12234566676 4577889999999999999998883 3321 11 00000
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHH
Q 021527 109 VIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKE 187 (311)
Q Consensus 109 ~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~ 187 (311)
. .......+ ...++..-..+.++.+|+.+++||++-+-.+ .+..+.+.++|+|++++..-.
T Consensus 187 ~-~~~~~~~~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v~~-------~e~A~~a~~~GaD~I~vsn~G---------- 248 (352)
T 3sgz_A 187 K-EEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILT-------KEDAELAMKHNVQGIVVSNHG---------- 248 (352)
T ss_dssp -------------CCCTTCCHHHHHHHHHHCCSCEEEEEECS-------HHHHHHHHHTTCSEEEECCGG----------
T ss_pred c-cccccchhhhhccCCCCCHHHHHHHHHhcCCCEEEEecCc-------HHHHHHHHHcCCCEEEEeCCC----------
Confidence 0 00000000 0001111123578888888899998875322 356778888999998776310
Q ss_pred HHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHH
Q 021527 188 AMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHV 265 (311)
Q Consensus 188 ~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v 265 (311)
| .. ..|. + ...+.+.++++.+ ++||++.+||++.+|+
T Consensus 249 ----G-~~-------------------------------~d~~----~-~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv 287 (352)
T 3sgz_A 249 ----G-RQ-------------------------------LDEV----S-ASIDALREVVAAVKGKIEVYMDGGVRTGTDV 287 (352)
T ss_dssp ----G-TS-------------------------------SCSS----C-CHHHHHHHHHHHHTTSSEEEEESSCCSHHHH
T ss_pred ----C-Cc-------------------------------cCCC----c-cHHHHHHHHHHHhCCCCeEEEECCCCCHHHH
Confidence 0 00 0010 1 1235566666654 6999999999999999
Q ss_pred HHHHHcCCcEEEEhhHhhchhh
Q 021527 266 QQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 266 ~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.+.+..|||+|.||++++..+.
T Consensus 288 ~kaLalGA~aV~iGr~~l~~l~ 309 (352)
T 3sgz_A 288 LKALALGARCIFLGRPILWGLA 309 (352)
T ss_dssp HHHHHTTCSEEEESHHHHHHHH
T ss_pred HHHHHcCCCEEEECHHHHHHHH
Confidence 9999999999999999997653
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.8e-07 Score=86.28 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=103.1
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+++.....++.+ .++.|. .|++ +.+.+.++.+.++|+|+|++..+...+ +.+.+
T Consensus 77 ~ee~~~~i~~~~--~~~~~~-~g~~--~~~~e~~~~a~~aGvdvI~id~a~G~~---------------------~~~~e 130 (361)
T 3r2g_A 77 IEENIQEFKKCK--GPVFVS-VGCT--ENELQRAEALRDAGADFFCVDVAHAHA---------------------KYVGK 130 (361)
T ss_dssp HHHHHHHHHTCC--SCCBEE-ECSS--HHHHHHHHHHHHTTCCEEEEECSCCSS---------------------HHHHH
T ss_pred HHHHHHHHhhcc--eEEEEE-cCCC--HHHHHHHHHHHHcCCCEEEEeCCCCCc---------------------HhHHH
Confidence 444444444332 233332 3554 567889999999999999998665322 13356
Q ss_pred HHHHhhccC-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHH
Q 021527 130 MLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRM 208 (311)
Q Consensus 130 ~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri 208 (311)
.++++|+.. ++||+.-.- ...+.++.+.++|+|+|.+.--| | .....|.
T Consensus 131 ~I~~ir~~~~~~~Vi~G~V-------~T~e~A~~a~~aGaD~I~Vg~g~--------------G---------~~~~tr~ 180 (361)
T 3r2g_A 131 TLKSLRQLLGSRCIMAGNV-------ATYAGADYLASCGADIIKAGIGG--------------G---------SVCSTRI 180 (361)
T ss_dssp HHHHHHHHHTTCEEEEEEE-------CSHHHHHHHHHTTCSEEEECCSS--------------S---------SCHHHHH
T ss_pred HHHHHHHhcCCCeEEEcCc-------CCHHHHHHHHHcCCCEEEEcCCC--------------C---------cCccccc
Confidence 788888764 788887321 12346778889999998773111 0 0000111
Q ss_pred HHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 209 KAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 209 ~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
. +|. +.+ ..+.|.++++... ||++.+||++++++.+++..|||+|.+||.|...-+
T Consensus 181 --~----------------~g~--g~p--~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~E 236 (361)
T 3r2g_A 181 --K----------------TGF--GVP--MLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAP 236 (361)
T ss_dssp --H----------------HCC--CCC--HHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTT
T ss_pred --c----------------CCc--cHH--HHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCcc
Confidence 0 110 112 2345666665544 999999999999999999999999999999998754
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-06 Score=86.51 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=94.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEE--cCCC------------CCCCCChHHHHHHH----------HHHHHcCCCHHHHH
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIEL--GVPY------------SDPLADGPVIQAAA----------TRSLARGTNFNAIL 128 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IEl--G~Pf------------sDP~aDGp~Iq~a~----------~~Al~~G~~~~~~~ 128 (311)
.+|.+.+.+.++..+++|+|.|+| +.|. +-|.. .++... ...+..-.+..-..
T Consensus 256 ~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~---~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~ 332 (511)
T 1kbi_A 256 NSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKA---GPKAMKKTNVEESQGASRALSKFIDPSLTW 332 (511)
T ss_dssp CSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC----------CCCCSSCCCGGGGCBTTBCTTCCH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcc---cccccccccccccccHHHHHhhccChHhHH
Confidence 455677889999999999997666 4343 11210 011000 00000000111124
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHH
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRM 208 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri 208 (311)
+.++++|+.+++||++-+..+ .+.++.+.++|+|+|++..-.-. .++ ..+
T Consensus 333 ~~i~~lr~~~~~PvivKgv~~-------~e~A~~a~~aGad~I~vs~hgG~------------~~d----~~~------- 382 (511)
T 1kbi_A 333 KDIEELKKKTKLPIVIKGVQR-------TEDVIKAAEIGVSGVVLSNHGGR------------QLD----FSR------- 382 (511)
T ss_dssp HHHHHHHHHCSSCEEEEEECS-------HHHHHHHHHTTCSEEEECCTTTT------------SST----TCC-------
T ss_pred HHHHHHHHHhCCcEEEEeCCC-------HHHHHHHHHcCCCEEEEcCCCCc------------cCC----CCC-------
Confidence 568888888899999875322 35677888999999888421100 000 000
Q ss_pred HHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-------CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 209 KAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-------TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 209 ~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-------~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+ ..+.+.++++.+ ++||++.+||++++++.+++..|||+|.||++
T Consensus 383 ---------------------------~-~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~ 434 (511)
T 1kbi_A 383 ---------------------------A-PIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRP 434 (511)
T ss_dssp ---------------------------C-HHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred ---------------------------c-hHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 0 112333333322 69999999999999999999999999999999
Q ss_pred hhchhh
Q 021527 282 MVKLLG 287 (311)
Q Consensus 282 iv~~~~ 287 (311)
+...+.
T Consensus 435 ~l~~~~ 440 (511)
T 1kbi_A 435 FLYANS 440 (511)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998664
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-06 Score=79.92 Aligned_cols=175 Identities=12% Similarity=0.091 Sum_probs=119.7
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILK 153 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~ 153 (311)
-+.+..+++++.|++.|++.||+|.|-+ |-+.+. +++.++.++.+++..++|+.++. .|
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~-~~~~p~---------------~~~~~e~~~~i~~~~~~~v~~l~-~n---- 81 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEATSFVS-PKWVPQ---------------LADSREVMAGIRRADGVRYSVLV-PN---- 81 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEEECSC-TTTCGG---------------GTTHHHHHHHSCCCSSSEEEEEC-SS----
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEccCcC-cccccc---------------ccCHHHHHHHHHhCCCCEEEEEe-CC----
Confidence 4568899999999999999999998765 432220 01224577777766678887765 34
Q ss_pred cCHHHHHHHHHHcCCcEEEec------------CCChhh----HHHHHHHHHHcCCCeEEEeC--------CCChHHHHH
Q 021527 154 RGVDNFMSTVRDIGIRGLVVP------------DVPLEE----TESLQKEAMKNKIELVLFTT--------PTTPTDRMK 209 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviip------------Dlp~ee----~~~~~~~~~~~gi~~I~lis--------p~t~~eri~ 209 (311)
.+-++.+.++|++.|.+. ..+.+| ..+..+.++++|+.+-..++ ..++.+.+.
T Consensus 82 ---~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~ 158 (295)
T 1ydn_A 82 ---MKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVA 158 (295)
T ss_dssp ---HHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHH
T ss_pred ---HHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHH
Confidence 456788999999998886 345554 45567888999997642221 123345544
Q ss_pred HHHH----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEE----eeCCCCHHHHHHHHHcCCcEEEE
Q 021527 210 AIVE----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAV----GFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 210 ~i~~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~v----GfGIst~e~v~~v~~~GADGvIV 278 (311)
++++ ..-..+++....|. ..|..+.++++.+++.++ +|+.+ ++|... .+.....++|++-|=+
T Consensus 159 ~~~~~~~~~G~d~i~l~Dt~G~-----~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~-an~l~Ai~aG~~~vd~ 230 (295)
T 1ydn_A 159 SVTEQLFSLGCHEVSLGDTIGR-----GTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRAL-DNIRVSLEKGLRVFDA 230 (295)
T ss_dssp HHHHHHHHHTCSEEEEEETTSC-----CCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHH-HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhcCCCEEEecCCCCC-----cCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHH-HHHHHHHHhCCCEEEe
Confidence 4444 34445676664443 346678899999999886 78766 577764 6777888899997754
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-08 Score=89.05 Aligned_cols=202 Identities=16% Similarity=0.186 Sum_probs=112.1
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+.+..+++++..+.++.+. ..+|++++|+++ . +..| .+.++.+|+. +.++++..-+
T Consensus 8 lalD~~~l~~~~~~~~~~~-~~v~~~Kv~~d~---------~-------~~~G------~~~v~~l~~~-~~~v~lD~kl 63 (239)
T 1dbt_A 8 IALDFASAEETLAFLAPFQ-QEPLFVKVGMEL---------F-------YQEG------PSIVKQLKER-NCELFLDLKL 63 (239)
T ss_dssp EECCCSSHHHHHHHTGGGT-TSCCEEEECHHH---------H-------HHHT------HHHHHHHHHT-TCEEEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhc-ccCcEEEECHHH---------H-------HHhC------HHHHHHHHHC-CCcEEEEecc
Confidence 3455666666555554431 127999998665 1 2223 4467777765 4566665533
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHc---CCC-e-EEEeCCCC--hHHHH-HHH-HHhC-Cc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKN---KIE-L-VLFTTPTT--PTDRM-KAI-VEAS-EG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~---gi~-~-I~lisp~t--~~eri-~~i-~~~a-~g 217 (311)
..+-.+ ..++++.+.+.|+|.+.++=..-.+ ...+.+.++++ |.+ . +..+++.| +.+.+ +.+ .... ..
T Consensus 64 ~Dip~t-~~~~~~~~~~~Gad~vtvH~~~g~~~l~~~~~~~~~~~~~g~~~~~~~~V~~~ts~~~~~l~~~~~~~~~~~d 142 (239)
T 1dbt_A 64 HDIPTT-VNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLID 142 (239)
T ss_dssp CSCHHH-HHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBCSCHHH
T ss_pred ccchHH-HHHHHHHHHhcCCCEEEEeCcCCHHHHHHHHHHHHhhhccCCCCccEEEEEEcCCCCHHHHHHHhccCCCHHH
Confidence 222111 2357888999999999996332233 45677888888 875 2 34444433 22444 221 0000 00
Q ss_pred eEEEEecC-CccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHH-----------HHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSI-GVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHV-----------QQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~-G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v-----------~~v~~~GADGvIVGSaiv~ 284 (311)
.+..++.. .-.|...-+.. . +.++++|+.. +.++.|-.||+ +++. .++.++|||.+|||+++.+
T Consensus 143 ~Vl~ma~~~~~~G~~g~v~~-~-~~i~~lr~~~~~~~i~v~gGI~-~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~ 219 (239)
T 1dbt_A 143 TVVHYSKQAEESGLDGVVCS-V-HEAKAIYQAVSPSFLTVTPGIR-MSEDAANDQVRVATPAIAREKGSSAIVVGRSITK 219 (239)
T ss_dssp HHHHHHHHHHHTTCSEEECC-G-GGHHHHTTTSCTTCEEEECCBC-CTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHT
T ss_pred HHHHHHHHHHHhCCCEEEEC-H-HHHHHHHHhcCCCcEEEeCCcC-CCCCCccceeccCCHHHHHHcCCCEEEEChhhcC
Confidence 11111111 01121111111 1 3577788776 36899999997 4565 7888999999999999997
Q ss_pred hhhhcCCchhHHHHHHHH
Q 021527 285 LLGEAQSPEEGLKELEKF 302 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~ 302 (311)
. .++.+.++++++-
T Consensus 220 a----~dp~~a~~~l~~~ 233 (239)
T 1dbt_A 220 A----EDPVKAYKAVRLE 233 (239)
T ss_dssp S----SCHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHH
Confidence 3 2344444444443
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=79.81 Aligned_cols=171 Identities=18% Similarity=0.237 Sum_probs=107.1
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC-cchhccCH-
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY-NPILKRGV- 156 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~-n~i~~~g~- 156 (311)
..+.+...+++|||-|||+ ++ ++. .|.|.. +..++.+++.+++||.+|.-- ..-|.|.-
T Consensus 10 s~~~a~~A~~~GAdRIELc---~~-L~~-------------GGlTPS--~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~ 70 (256)
T 1twd_A 10 SMECALTAQQNGADRVELC---AA-PKE-------------GGLTPS--LGVLKSVRQRVTIPVHPIIRPRGGDFCYSDG 70 (256)
T ss_dssp SHHHHHHHHHTTCSEEEEC---BC-GGG-------------TCBCCC--HHHHHHHHHHCCSCEEEBCCSSSSCSCCCHH
T ss_pred CHHHHHHHHHcCCCEEEEc---CC-ccc-------------CCCCCC--HHHHHHHHHHcCCceEEEECCCCCCCcCCHH
Confidence 3577888899999999998 33 222 245433 346677777789999999411 01122332
Q ss_pred -----HHHHHHHHHcCCcEEEecCCCh------hhHHHHHHHHHHcCCCeEEEeC---CCChHHHHHHHHHhCCceEEEE
Q 021527 157 -----DNFMSTVRDIGIRGLVVPDVPL------EETESLQKEAMKNKIELVLFTT---PTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 157 -----~~fi~~~~~aGadGviipDlp~------ee~~~~~~~~~~~gi~~I~lis---p~t~~eri~~i~~~a~gfiY~v 222 (311)
.+.++.+++.|+|||++.=|.. +...++.+.+. |+...+--+ -..+.+-++.+.+. ||.-+.
T Consensus 71 E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~ale~L~~l--G~~rIL 146 (256)
T 1twd_A 71 EFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG--PLAVTFHRAFDMCANPLYTLNNLAEL--GIARVL 146 (256)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT--TSEEEECGGGGGCSCHHHHHHHHHHH--TCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhC--CCcEEEECchhccCCHHHHHHHHHHc--CCCEEE
Confidence 3466778999999999964432 33555665553 666444211 12234556666665 676555
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
+ +|.+...... .+.|+++.+.. .+-|++|+||+ ++|+.++...|++-+=.
T Consensus 147 T----SG~~~~a~~g-~~~L~~Lv~~a~~i~Im~GgGv~-~~Ni~~l~~tGv~e~H~ 197 (256)
T 1twd_A 147 T----SGQKSDALQG-LSKIMELIAHRDAPIIMAGAGVR-AENLHHFLDAGVLEVHS 197 (256)
T ss_dssp E----CTTSSSTTTT-HHHHHHHHTSSSCCEEEEESSCC-TTTHHHHHHHTCSEEEE
T ss_pred C----CCCCCCHHHH-HHHHHHHHHhhCCcEEEecCCcC-HHHHHHHHHcCCCeEeE
Confidence 3 3444333333 35677765533 56699999997 69999998888887753
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-06 Score=82.44 Aligned_cols=187 Identities=14% Similarity=0.172 Sum_probs=109.9
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHHHHHHhhccCCCcEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG-TNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G-~~~~~~~~~i~~ir~~~~iPii 143 (311)
++.-+.++.+. .+..+..+..|+|.+++.+.+ .|... ...| .+.++.++.++++++.+++||+
T Consensus 147 ~ianig~~~~~----e~~~~~ve~~~adal~ihln~---------~qe~~---~p~Gd~~~~~~~~~I~~l~~~~~~PVi 210 (365)
T 3sr7_A 147 LATNIGLDKPY----QAGLQAVRDLQPLFLQVHINL---------MQELL---MPEGEREFRSWKKHLSDYAKKLQLPFI 210 (365)
T ss_dssp EEEEEETTSCH----HHHHHHHHHHCCSCEEEEECH---------HHHHT---SSSSCCCCHHHHHHHHHHHHHCCSCEE
T ss_pred EEEEeCCCCCH----HHHHHHHHhcCCCEEEEeccc---------ccccc---CCCCCCcHHHHHHHHHHHHHhhCCCEE
Confidence 44455555441 256677778899999997442 12211 0122 4566778899999999999999
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+-.-.+ .-..+.++.+.++|+|+|.+..-. |-. +....+ .|.. . | .
T Consensus 211 vK~vg~----g~s~e~A~~l~~aGad~I~V~g~G--------------Gt~---~a~ie~--~r~~------~---~--~ 256 (365)
T 3sr7_A 211 LKEVGF----GMDVKTIQTAIDLGVKTVDISGRG--------------GTS---FAYIEN--RRGG------N---R--S 256 (365)
T ss_dssp EEECSS----CCCHHHHHHHHHHTCCEEECCCBC------------------------------------------C--G
T ss_pred EEECCC----CCCHHHHHHHHHcCCCEEEEeCCC--------------Ccc---cchhhc--cccc------c---c--c
Confidence 984211 012467888999999999875321 000 000000 0100 0 0 0
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHH
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKF 302 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~ 302 (311)
+.. ..+.+ ..+.+.+++... ++||++.+||+++.|+.+.+..|||+|-+|++++..+...+ .+.-.+.++.+
T Consensus 257 --~~~--~~g~p--t~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G-~~~v~~~l~~l 329 (365)
T 3sr7_A 257 --YLN--QWGQT--TAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHS-VHEVIAIVNGW 329 (365)
T ss_dssp --GGT--TCSCB--HHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSC-HHHHHHHHHHH
T ss_pred --ccc--ccccc--HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcC-hHHHHHHHHHH
Confidence 000 01122 123455565543 68999999999999999999999999999999998764321 11122344555
Q ss_pred HHHHHh
Q 021527 303 AKSLKS 308 (311)
Q Consensus 303 ~~~l~~ 308 (311)
.++|+.
T Consensus 330 ~~eL~~ 335 (365)
T 3sr7_A 330 KEDLRL 335 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-06 Score=78.54 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=97.3
Q ss_pred HHHHhhccCCCcEEEEecCcchhccC--H---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcCCCeEEEeC
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRG--V---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g--~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~gi~~I~lis 200 (311)
.+..+++.+++|+.-- | +..+. . +--+..+++.|+|.+++.. +.++|..+..+.+.++|+++++-+.
T Consensus 47 ~L~~v~~~~~i~v~aQ---d-v~~~~~Ga~TGeis~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg 122 (226)
T 1w0m_A 47 ELGLVSQSVDIPVYAQ---G-ADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAP 122 (226)
T ss_dssp GHHHHHTTCSSCBEES---C-CSBSSCSSCTTCCBHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHhcCCceEee---E-CChhhCCCccCCCCHHHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3444555567786552 2 22111 0 1125678999999999975 5567888899999999999877665
Q ss_pred CCChHHHHHHHHHhCCceEEEEe--cCCccCCC-CCCCch-HHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcE
Q 021527 201 PTTPTDRMKAIVEASEGFVYLVS--SIGVTGAR-ASISGH-VQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADG 275 (311)
Q Consensus 201 p~t~~eri~~i~~~a~gfiY~vs--~~G~TG~~-~~~~~~-~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADG 275 (311)
.+ .++ +.+.......|-+-. ..| ||.. ....++ +.+..+.+|+.. +++++.|+||++++++..+...|+||
T Consensus 123 e~-~e~--~~~~~~~~~iIayep~waiG-tG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG 198 (226)
T 1w0m_A 123 DP-RTS--LAAAALGPHAVAVEPPELIG-TGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRG 198 (226)
T ss_dssp SH-HHH--HHHHHTCCSEEEECCGGGTT-TSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred CH-HHH--HHHhcCCCCEEEEcChhhhc-cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCE
Confidence 33 222 223333334444432 233 5510 112333 555566666654 68999999999999999999999999
Q ss_pred EEEhhHhhch
Q 021527 276 VIVGSAMVKL 285 (311)
Q Consensus 276 vIVGSaiv~~ 285 (311)
+-||+++++.
T Consensus 199 ~LVG~a~l~a 208 (226)
T 1w0m_A 199 VLLASAAVKA 208 (226)
T ss_dssp EEECHHHHTC
T ss_pred EEECHHHHCC
Confidence 9999999984
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-07 Score=91.57 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=42.8
Q ss_pred HHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 239 QTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 239 ~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.++++++++.+ ++||+..+||.|++++.+.+..|||+|-||++++.
T Consensus 360 l~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~ 407 (443)
T 1tv5_A 360 TKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVF 407 (443)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHH
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHh
Confidence 47899999988 89999999999999999999999999999999874
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=82.29 Aligned_cols=210 Identities=18% Similarity=0.209 Sum_probs=122.2
Q ss_pred CChhHHHHHHHHHHHcCCccEEEE-----EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 021527 45 SPTVGLAETFTRLKKQGKVALIPY-----ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA 119 (311)
Q Consensus 45 ~~m~~i~~~f~~~~~~~~~~li~y-----i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~ 119 (311)
.++.|++..|.. +.||..++++ .-|. +.++.+.+.+..+. .|+|.|-+- -|
T Consensus 39 Gk~~Rl~ri~~~--~~G~~~iv~~DHG~~~gp~-~gl~~~~~~i~~l~-~g~dav~~~--------~G------------ 94 (295)
T 3glc_A 39 GMQSRLSRIFNP--KTGKTVMLAFDHGYFQGPT-TGLERIDINIAPLF-EHADVLMCT--------RG------------ 94 (295)
T ss_dssp HHHHHHHHHSCT--TTSCEEEEECCTHHHHCSC-TTCTTHHHHTGGGG-GGCSEEEEC--------HH------------
T ss_pred HHHHHHHHhcCC--CCCCEEEEecCCCcccCCC-CchhhhHHHHHHhh-cCCCEEEEC--------Hh------------
Confidence 344566666642 2355444442 1233 45667777777765 689999984 12
Q ss_pred cCCCHHHHHHHHHHhhc-cCCCcEEEEecCcc-hhc----cCHHHHHHHHHHcCCcEEEec----CCC----hhhHHHHH
Q 021527 120 RGTNFNAILSMLKEVVP-QMSCPIALFTYYNP-ILK----RGVDNFMSTVRDIGIRGLVVP----DVP----LEETESLQ 185 (311)
Q Consensus 120 ~G~~~~~~~~~i~~ir~-~~~iPiilm~Y~n~-i~~----~g~~~fi~~~~~aGadGviip----Dlp----~ee~~~~~ 185 (311)
+++...+ ..++|+++-.-.+. ++. .-+..-++.+.+.|+|+|.+. +-. +++..+++
T Consensus 95 ----------~~~~~~~~~~~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~ 164 (295)
T 3glc_A 95 ----------ILRSVVPPATNRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLV 164 (295)
T ss_dssp ----------HHHHHSCGGGCCCEEEECEECCCTTSCTTCCEECSCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHH
T ss_pred ----------HHhhhccccCCccEEEEEcCCCcCCCCCccchhHHHHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHH
Confidence 3333322 24788887632111 111 011124677889999998764 111 23456788
Q ss_pred HHHHHcCCCeEEEeCC----CChHHHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCC
Q 021527 186 KEAMKNKIELVLFTTP----TTPTDRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGI 259 (311)
Q Consensus 186 ~~~~~~gi~~I~lisp----~t~~eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGI 259 (311)
+.|+++|+.+|....+ .+.++.+...++. ..|..|+-+. .|+ +.++++.+.+.+||++-+|+
T Consensus 165 ~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~--~t~----------e~~~~vv~~~~vPVv~~GG~ 232 (295)
T 3glc_A 165 DAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY--YVE----------KGFERIVAGCPVPIVIAGGK 232 (295)
T ss_dssp HHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEE--CCT----------TTHHHHHHTCSSCEEEECCS
T ss_pred HHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeC--CCH----------HHHHHHHHhCCCcEEEEECC
Confidence 8999999987764322 1233322222222 3455555322 232 12567777778999999999
Q ss_pred CCH-----HHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHH
Q 021527 260 SKP-----EHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 260 st~-----e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
++. ++++++.+.||+|++||+++... .++...++.+.+.++
T Consensus 233 ~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~----~dp~~~~~al~~ivh 278 (295)
T 3glc_A 233 KLPEREALEMCWQAIDQGASGVDMGRNIFQS----DHPVAMMKAVQAVVH 278 (295)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEESHHHHTS----SSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEeHHHHhcC----cCHHHHHHHHHHHHh
Confidence 853 36778889999999999999974 234445555555443
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.5e-06 Score=76.03 Aligned_cols=172 Identities=14% Similarity=0.184 Sum_probs=116.4
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..+++++.|++.|+|.||+|.|- .|-.- |... +..+.++.+++..++|+.++. .|
T Consensus 28 ~~e~k~~i~~~L~~~Gv~~IE~g~~~-~~~~~-~~~~--------------d~~~~~~~~~~~~~~~~~~l~-~~----- 85 (302)
T 2ftp_A 28 EVADKIRLVDDLSAAGLDYIEVGSFV-SPKWV-PQMA--------------GSAEVFAGIRQRPGVTYAALA-PN----- 85 (302)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEECS-CTTTC-GGGT--------------THHHHHHHSCCCTTSEEEEEC-CS-----
T ss_pred CHHHHHHHHHHHHHcCcCEEEECCCc-Ccccc-cccc--------------CHHHHHHHhhhcCCCEEEEEe-CC-----
Confidence 56889999999999999999999743 33211 1110 112345666656678887765 23
Q ss_pred CHHHHHHHHHHcCCcEEEecC------------CChhh----HHHHHHHHHHcCCCeEEEe-----CC---CChHHHHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVVPD------------VPLEE----TESLQKEAMKNKIELVLFT-----TP---TTPTDRMKA 210 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipD------------lp~ee----~~~~~~~~~~~gi~~I~li-----sp---~t~~eri~~ 210 (311)
.++++.+.++|++.|.+.| .+.|| ..+..+.++++|+.+-..+ .| .++++...+
T Consensus 86 --~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~ 163 (302)
T 2ftp_A 86 --LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAW 163 (302)
T ss_dssp --HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHH
T ss_pred --HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHH
Confidence 5789999999999988743 33343 5667888899998753221 12 134455444
Q ss_pred HHH----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 211 IVE----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 211 i~~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+++ ..-..+++.+..|. ..|..+.++++++++.+ ++|+.+ ++|... .++...+++|++-|
T Consensus 164 ~~~~~~~~G~d~i~l~DT~G~-----~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~-An~laAv~aGa~~v 232 (302)
T 2ftp_A 164 VARELQQMGCYEVSLGDTIGV-----GTAGATRRLIEAVASEVPRERLAGHFHDTYGQAL-ANIYASLLEGIAVF 232 (302)
T ss_dssp HHHHHHHTTCSEEEEEESSSC-----CCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHH-HHHHHHHHTTCCEE
T ss_pred HHHHHHHcCCCEEEEeCCCCC-----cCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHH-HHHHHHHHhCCCEE
Confidence 444 33345666665554 34667889999999988 688876 578874 67888888999877
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.5e-07 Score=82.15 Aligned_cols=175 Identities=19% Similarity=0.243 Sum_probs=105.6
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh---ccCCCcEEEEecC-cchhccC
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV---PQMSCPIALFTYY-NPILKRG 155 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir---~~~~iPiilm~Y~-n~i~~~g 155 (311)
.+.+...+++|||-|||. ++ ++.| |.|.. +..++.++ +.+++||.+|.-- ..-|.|.
T Consensus 11 ~~~a~~A~~~GAdRIELc---~~-L~~G-------------GlTPS--~g~i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys 71 (224)
T 2bdq_A 11 LTDLTRLDKAIISRVELC---DN-LAVG-------------GTTPS--YGVIKEANQYLHEKGISVAVMIRPRGGNFVYN 71 (224)
T ss_dssp TTTGGGCCTTTCCEEEEE---BC-GGGT-------------CBCCC--HHHHHHHHHHHHHTTCEEEEECCSSSSCSCCC
T ss_pred HHHHHHHHHcCCCEEEEc---CC-cccC-------------CcCCC--HHHHHHHHHhhhhcCCceEEEECCCCCCCcCC
Confidence 355667789999999998 33 2222 44432 23556666 7789999999511 0112233
Q ss_pred H------HHHHHHHHHcCCcEEEecCCC------hhhHHHHHHHHHHcCCCeEEEe----C-CCChHHHHHHHHHhCCce
Q 021527 156 V------DNFMSTVRDIGIRGLVVPDVP------LEETESLQKEAMKNKIELVLFT----T-PTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 156 ~------~~fi~~~~~aGadGviipDlp------~ee~~~~~~~~~~~gi~~I~li----s-p~t~~eri~~i~~~a~gf 218 (311)
- .+.++.+++.|+|||++.=|. .+...++.+.+. |+...+-- . ...+.+-++.+.+. ||
T Consensus 72 ~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~--~~~vTFHRAFD~~~~~d~~~ale~L~~l--Gv 147 (224)
T 2bdq_A 72 DLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQ--GLPLVFHMAFDVIPKSDQKKSIDQLVAL--GF 147 (224)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT--TCCEEECGGGGGSCTTTHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhC--CCeEEEECchhccCCcCHHHHHHHHHHc--CC
Confidence 2 346677999999999995332 233556666553 67655522 2 12334556666554 77
Q ss_pred EEEEecCCccCCCCC--CCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARAS--ISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVA-GWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~--~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSaiv~ 284 (311)
.-+.+ +|.+.. ... -.+.|+++.+.. .+-|++|+||+ ++|+.++. ..|++-+= ||.++.
T Consensus 148 ~rILT----SG~~~~~~a~~-g~~~L~~Lv~~a~~ri~Im~GgGV~-~~Ni~~l~~~tGv~e~H-~s~i~~ 211 (224)
T 2bdq_A 148 TRILL----HGSSNGEPIIE-NIKHIKALVEYANNRIEIMVGGGVT-AENYQYICQETGVKQAH-GTRITQ 211 (224)
T ss_dssp CEEEE----CSCSSCCCGGG-GHHHHHHHHHHHTTSSEEEECSSCC-TTTHHHHHHHHTCCEEE-ETTCC-
T ss_pred CEEEC----CCCCCCCcHHH-HHHHHHHHHHhhCCCeEEEeCCCCC-HHHHHHHHHhhCCCEEc-cccccC
Confidence 66554 343333 222 335566654432 46799999997 69999998 57887764 565555
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-06 Score=80.38 Aligned_cols=160 Identities=21% Similarity=0.242 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHH-----HHHHHcCCCHH----HHHHHHHHhhccC--CCcEEEEe
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAA-----TRSLARGTNFN----AILSMLKEVVPQM--SCPIALFT 146 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~-----~~Al~~G~~~~----~~~~~i~~ir~~~--~iPiilm~ 146 (311)
.+.+.++.+.++|.|+|||-. +.|-.+.+-. .|-.+.|-+++ -++++++.+|+.+ +.||.+-.
T Consensus 159 ~f~~aA~~a~~aGfDgVEih~------a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRi 232 (363)
T 3l5l_A 159 DFVDAARRARDAGFEWIELHF------AHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARF 232 (363)
T ss_dssp HHHHHHHHHHHHTCSEEEEEE------CTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcc------ccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 577888889999999999942 1122221110 11112333333 3477888888876 57887743
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
-.+.....| +.+.++..++.+.+.+.|++.|-+...+.... ...
T Consensus 233 s~~~~~~~G-------------------~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~---------~~~-------- 276 (363)
T 3l5l_A 233 GVLEYDGRD-------------------EQTLEESIELARRFKAGGLDLLSVSVGFTIPD---------TNI-------- 276 (363)
T ss_dssp EEECSSSCH-------------------HHHHHHHHHHHHHHHHTTCCEEEEEECCCSSC---------CCC--------
T ss_pred cchhcCCCC-------------------CCCHHHHHHHHHHHHHcCCCEEEEecCccccc---------ccc--------
Confidence 211111111 01234555666666777777665543221100 000
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..+ +....++++++|+.+++||++++||++++++.++++.| ||.|.+|++++.
T Consensus 277 ~~~-----~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la 330 (363)
T 3l5l_A 277 PWG-----PAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLA 330 (363)
T ss_dssp CCC-----TTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred CCC-----cchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHh
Confidence 001 11124678889988899999999999999999999999 999999999875
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-06 Score=96.16 Aligned_cols=164 Identities=18% Similarity=0.213 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHhhccC--CCcEEEEe-cCcchhccCHHHHHHHHHHcCCcE--EEec-CCChhhHHHHHHHHHHcCCCe
Q 021527 122 TNFNAILSMLKEVVPQM--SCPIALFT-YYNPILKRGVDNFMSTVRDIGIRG--LVVP-DVPLEETESLQKEAMKNKIEL 195 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~--~iPiilm~-Y~n~i~~~g~~~fi~~~~~aGadG--viip-Dlp~ee~~~~~~~~~~~gi~~ 195 (311)
.+.+.+-+.|+++|+.. +.|+++.. |.|+-...-..+.++.+.+.|++- |.+. ..| ..+++.+.++++|+..
T Consensus 618 ~~~e~l~~~i~~vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p--~~e~~~~~l~~~gi~~ 695 (2060)
T 2uva_G 618 YNAQKMSDAISKIEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGVP--SIEVANEYIQTLGIRH 695 (2060)
T ss_dssp CSHHHHHHHHHHHGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSCC--CHHHHHHHHHHSCCSE
T ss_pred CCHHHHHHHHHHHHhhcccCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecCCCC--CHHHHHHHHHHcCCeE
Confidence 34566667888898877 68988854 445432211246678888899887 7764 344 2334566778889998
Q ss_pred EEEeCCCChHH--HHHHHHHhCCceEEEEecCC-ccCCCCCC---CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH
Q 021527 196 VLFTTPTTPTD--RMKAIVEASEGFVYLVSSIG-VTGARASI---SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA 269 (311)
Q Consensus 196 I~lisp~t~~e--ri~~i~~~a~gfiY~vs~~G-~TG~~~~~---~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~ 269 (311)
+.+++ +..+. +..++.+....++.++-..| -.|...+. .....+++.++++..++||++++||.+++++.+++
T Consensus 696 i~~v~-~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aal 774 (2060)
T 2uva_G 696 ISFKP-GSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYL 774 (2060)
T ss_dssp EEECC-CSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHH
T ss_pred EEecC-CHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHh
Confidence 87654 33322 22334454444444211122 23333332 24567899999999999999999999999999999
Q ss_pred -----------HcCCcEEEEhhHhhchhhh
Q 021527 270 -----------GWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 270 -----------~~GADGvIVGSaiv~~~~~ 288 (311)
.+|||||.+||.|+-..+.
T Consensus 775 tg~ws~~~g~palGAdgV~~GT~f~~t~Ea 804 (2060)
T 2uva_G 775 TGSWSTKFGYPPMPFDGCMFGSRMMTAKEA 804 (2060)
T ss_dssp HTCGGGTTTSCCCCCSCEEESGGGGGBTTS
T ss_pred cCcchhhcCCCCCCCCEEEEchhhhcCcCC
Confidence 9999999999999997753
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=98.46 E-value=4.3e-06 Score=75.22 Aligned_cols=197 Identities=16% Similarity=0.185 Sum_probs=110.7
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
.+-+..++.+...+.++.+. ..++++++|.++ + +..| .+.++++|+..+.++++..-
T Consensus 16 ilAlD~~~~~~a~~~v~~~~-~~v~~~Kvg~~l--------f--------~~~G------~~~v~~l~~~~g~~v~lD~K 72 (228)
T 3m47_A 16 ILAMDLMNRDDALRVTGEVR-EYIDTVKIGYPL--------V--------LSEG------MDIIAEFRKRFGCRIIADFK 72 (228)
T ss_dssp EEECCCCSHHHHHHHHHTTT-TTCSEEEEEHHH--------H--------HHHC------THHHHHHHHHHCCEEEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHcC-CcccEEEEcHHH--------H--------HhcC------HHHHHHHHhcCCCeEEEEEe
Confidence 35667899888888887763 349999999543 1 1234 23566666533567777654
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeEEEeCCCChHH-------HHHHHHHh--CCc
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELVLFTTPTTPTD-------RMKAIVEA--SEG 217 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I~lisp~t~~e-------ri~~i~~~--a~g 217 (311)
+.++-.+ .+++++.+.+.|+|.+.++-.. .+-...+.+.++++|.. +++++++++.+ ....+++. ..|
T Consensus 73 l~DipnT-v~~~~~~~~~~gad~vtvh~~~G~~~l~~~~~~~~~~g~~-v~vLt~~s~~~~~~~~~~~~~~~a~~a~~~G 150 (228)
T 3m47_A 73 VADIPET-NEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE-VFLLTEMSHPGAEMFIQGAADEIARMGVDLG 150 (228)
T ss_dssp ECSCHHH-HHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCE-EEEECCCCSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred ecccHhH-HHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCCC-eEEEEeCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 4333211 3568888999999999996433 33356677777777754 55555555431 11222222 234
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCC--CcEEEeeCCCCH-HHHHHHHHcCCcEEEEhhHhhchhhhcCCchh
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESST--KPVAVGFGISKP-EHVQQVAGWGADGVIVGSAMVKLLGEAQSPEE 294 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~vGfGIst~-e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~ 294 (311)
+.-+|. |.. . .+.++++|+.++ .++ +--||+.. .+. ++.+.|||.+|||+++.+. .++.
T Consensus 151 ~~GvV~-----~at---~---~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a----~dp~- 212 (228)
T 3m47_A 151 VKNYVG-----PST---R---PERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLA----DNPA- 212 (228)
T ss_dssp CCEEEC-----CSS---C---HHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTS----SCHH-
T ss_pred CcEEEE-----CCC---C---hHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCC----CCHH-
Confidence 433321 111 1 145777777653 555 54566421 256 7778999999999999873 2343
Q ss_pred HHHHHHHHHHHHHhh
Q 021527 295 GLKELEKFAKSLKSA 309 (311)
Q Consensus 295 ~~~~~~~~~~~l~~~ 309 (311)
+.++++.++++.+
T Consensus 213 --~a~~~~~~~~~~~ 225 (228)
T 3m47_A 213 --AAAAGAIESIKDL 225 (228)
T ss_dssp --HHHHHHHHHC---
T ss_pred --HHHHHHHHHHHHH
Confidence 3444444555443
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=4.4e-06 Score=82.75 Aligned_cols=138 Identities=19% Similarity=0.243 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g 155 (311)
..+.+.++.+.++|+|.++++.-+.+| ...++.++++|+.+ ++|+++-+-.
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~G~~---------------------~~~~e~i~~i~~~~p~~pvi~g~~~------- 287 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAHGHS---------------------RRVIETLEMIKADYPDLPVVAGNVA------- 287 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCCSS---------------------HHHHHHHHHHHHHCTTSCEEEEEEC-------
T ss_pred HhHHHHHHHHHHhCCCEEEEEecCCch---------------------HHHHHHHHHHHHHCCCceEEeCCcC-------
Confidence 456789999999999999997433221 24567888888876 7998774221
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCC
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASIS 235 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~ 235 (311)
..+.++.+.++|+|++.+..-+ | +..+ .+. . . |. |.. .
T Consensus 288 t~e~a~~l~~~G~d~I~v~~~~--------------G-------~~~~--~~~--~-~------------~~-g~p---~ 325 (494)
T 1vrd_A 288 TPEGTEALIKAGADAVKVGVGP--------------G-------SICT--TRV--V-A------------GV-GVP---Q 325 (494)
T ss_dssp SHHHHHHHHHTTCSEEEECSSC--------------S-------TTCH--HHH--H-H------------CC-CCC---H
T ss_pred CHHHHHHHHHcCCCEEEEcCCC--------------C-------cccc--ccc--c-C------------CC-Ccc---H
Confidence 1345677888999998874211 1 0011 110 0 0 11 110 0
Q ss_pred chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 236 GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 236 ~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
......+.+.++..++||++.+||++++++.+++..|||+|.+|++|..
T Consensus 326 ~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l~ 374 (494)
T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAG 374 (494)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHhc
Confidence 1122234444444689999999999999999999999999999999963
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.2e-06 Score=74.01 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=84.0
Q ss_pred HHHHHHHhhccCCCcEEEEec-CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe--CCCC
Q 021527 127 ILSMLKEVVPQMSCPIALFTY-YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT--TPTT 203 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y-~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li--sp~t 203 (311)
+-++++.+++. +.|+++..- .+.+-+. +.-++-+...++||+|=.- ......++++|+..|+-+ -.+.
T Consensus 45 L~~iv~~ik~~-gK~vivh~DlI~GLs~d--~~ai~fL~~~~pdGIIsTk------~~~i~~Akk~GL~tIqR~FliDs~ 115 (188)
T 1vkf_A 45 LKFHLKILKDR-GKTVFVDMDFVNGLGEG--EEAILFVKKAGADGIITIK------PKNYVVAKKNGIPAVLRFFALDSK 115 (188)
T ss_dssp HHHHHHHHHHT-TCEEEEEGGGEETCCSS--HHHHHHHHHHTCSEEEESC------HHHHHHHHHTTCCEEEEEECCSHH
T ss_pred HHHHHHHHHHC-CCeEEEecCcccccCCC--HHHHHHHHhcCCCEEEcCc------HHHHHHHHHcCCEEeeEEEEEEeH
Confidence 34577777776 888888631 1111110 1222223677899986552 236677899999888633 3222
Q ss_pred h-HHHHHHHHHhCCceEEEEecCCccCCCCCCCch-HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 204 P-TDRMKAIVEASEGFVYLVSSIGVTGARASISGH-VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 204 ~-~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~-~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
. +..++.+......++-+.. .. ..+.++++ +++|+++|++|+++|++.+ +++|||+|..|+.
T Consensus 116 al~~~~~~I~~~kPD~iEiLP------------g~v~p~~I~~v---~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~ 179 (188)
T 1vkf_A 116 AVERGIEQIETLGVDVVEVLP------------GAVAPKVARKI---PGRTVIAAGLVETEEEARE-ILKHVSAISTSSR 179 (188)
T ss_dssp HHHHHHHHHHHHTCSEEEEES------------GGGHHHHHTTS---TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCH
T ss_pred HHhhhhhhccccCCCeEeecC------------CCchHHHHHHh---cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCH
Confidence 2 2334555455566654441 11 23566666 7899999999999999999 9999999999863
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-05 Score=76.61 Aligned_cols=134 Identities=20% Similarity=0.164 Sum_probs=86.3
Q ss_pred HHHHHHHHHC--CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCH
Q 021527 80 AEALKLLDSC--GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGV 156 (311)
Q Consensus 80 ~e~~~~L~~~--GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~ 156 (311)
.+.++.+.+. |+|++++...+.+| ...++.++++|+.+ ++|+++-+-.+
T Consensus 120 ~~~~~~l~~~~~g~~~i~i~~~~g~~---------------------~~~~~~i~~lr~~~~~~~vi~g~v~t------- 171 (351)
T 2c6q_A 120 FEQLEQILEAIPQVKYICLDVANGYS---------------------EHFVEFVKDVRKRFPQHTIMAGNVVT------- 171 (351)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSCTTB---------------------HHHHHHHHHHHHHCTTSEEEEEEECS-------
T ss_pred HHHHHHHHhccCCCCEEEEEecCCCc---------------------HHHHHHHHHHHHhcCCCeEEEEeCCC-------
Confidence 4566777776 99999986554322 23467888888887 88988643211
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCC-
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASIS- 235 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~- 235 (311)
.+..+.+.++|+|+|++.--+ |- + .+ .|. . . |. | .+
T Consensus 172 ~e~A~~a~~aGaD~I~v~~g~--------------G~--~-----~~--~r~--~-~------------g~-~----~p~ 208 (351)
T 2c6q_A 172 GEMVEELILSGADIIKVGIGP--------------GS--V-----CT--TRK--K-T------------GV-G----YPQ 208 (351)
T ss_dssp HHHHHHHHHTTCSEEEECSSC--------------ST--T-----BC--HHH--H-H------------CB-C----CCH
T ss_pred HHHHHHHHHhCCCEEEECCCC--------------Cc--C-----cC--ccc--c-C------------CC-C----ccH
Confidence 356778899999998774111 00 0 01 110 0 0 10 1 11
Q ss_pred chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 236 GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 236 ~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
......+.+..+..++||++.+||.++.++.+.+.+|||+|.+|+.|..
T Consensus 209 ~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~ 257 (351)
T 2c6q_A 209 LSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAG 257 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhc
Confidence 1111223333333579999999999999999999999999999999985
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.3e-05 Score=73.45 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=107.1
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+-+..|+.++..++++.+. ..++++++|.|+ + +..| .+.++++++..+.+|++..-+
T Consensus 29 VALD~~~~~eal~l~~~l~-~~v~~vKVG~~l---------f-------~~~G------~~~V~~Lk~~~g~~IflDlKl 85 (303)
T 3ru6_A 29 VALDLSTKEECLQLAKELK-NLDIWLKVGLRA---------Y-------LRDG------FKFIEELKKVDDFKIFLDLKF 85 (303)
T ss_dssp EECCCSSHHHHHHHHHHTT-TSSCEEEECHHH---------H-------HHHT------HHHHHHHHHHCCCEEEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhC-CCccEEEeCHHH---------H-------HHhC------HHHHHHHHHhhCCCEEEEeee
Confidence 5667889999999999976 459999999655 1 1122 346667766557788887655
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCC-eEEEe---CCCChHHHH------------HHH
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKIE-LVLFT---TPTTPTDRM------------KAI 211 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~-~I~li---sp~t~~eri------------~~i 211 (311)
.++-.+ ....++.+.+.|+|.+.+.-.. .+-...+.+.++++|-. .++.+ +..+ .+.+ ..+
T Consensus 86 ~DIpnT-v~~av~~~a~lGaD~vTVHa~~G~~~m~aa~e~a~~~~~~~~llaVtvLTS~s-~~~l~~l~~~~~~e~V~~l 163 (303)
T 3ru6_A 86 HDIPNT-MADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSKFSKRPLVLAVSALTSFD-EENFFSIYRQKIEEAVINF 163 (303)
T ss_dssp CSCHHH-HHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHTTSSSCCEEEEECSCTTCC-HHHHHHHHSSCHHHHHHHH
T ss_pred ccCchh-HHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhcCCCceEEEEEEecCCC-HHHHHHHHcCCHHHHHHHH
Confidence 433221 2456777888999999996432 23344456666655522 22222 2222 2211 112
Q ss_pred HHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHH----------HHHHHHHcCCcEEEE
Q 021527 212 VEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPE----------HVQQVAGWGADGVIV 278 (311)
Q Consensus 212 ~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e----------~v~~v~~~GADGvIV 278 (311)
++. ..|..++|. + +. .++++|+.+ +-.++|--||+-.. ++.++.++|||.+||
T Consensus 164 A~~a~~~G~dGvV~------s----~~----E~~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVv 229 (303)
T 3ru6_A 164 SKISYENGLDGMVC------S----VF----ESKKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVV 229 (303)
T ss_dssp HHHHHHTTCSEEEC------C----TT----THHHHHHHSCTTSEEEECCCCTTC--------CCSHHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEE------C----HH----HHHHHHHhCCCccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEE
Confidence 222 234444332 1 11 156777766 34677878886210 466778899999999
Q ss_pred hhHhhc
Q 021527 279 GSAMVK 284 (311)
Q Consensus 279 GSaiv~ 284 (311)
|++|.+
T Consensus 230 Gr~I~~ 235 (303)
T 3ru6_A 230 GRPIYK 235 (303)
T ss_dssp CHHHHT
T ss_pred ChHHhC
Confidence 999998
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=79.72 Aligned_cols=134 Identities=20% Similarity=0.257 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~ 156 (311)
.+.+.++.+.++|+|.|+++. +.| ..+..++.++++++.+ ++|++.-.. ..
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~------a~g---------------~~~~~~~~i~~l~~~~p~~pvi~G~v-------~t 284 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDT------AHG---------------HSAGVLRKIAEIRAHFPNRTLIAGNI-------AT 284 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECC------SCT---------------TCHHHHHHHHHHHHHCSSSCEEEEEE-------CS
T ss_pred hHHHHHHHHHHcCCCeEEEee------ecC---------------cchhHHHHHHHHHHHCCCCcEeCCCc-------cC
Confidence 457888999999999999983 112 1234567888888887 899884322 12
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+.++.+.++|+|++.+.--+ | +-.+. |. . .|. |. +
T Consensus 285 ~~~a~~~~~~Gad~I~vg~g~--------------g-------~~~~t--r~--~-------------~~~-~~----p- 320 (491)
T 1zfj_A 285 AEGARALYDAGVDVVKVGIGP--------------G-------SICTT--RV--V-------------AGV-GV----P- 320 (491)
T ss_dssp HHHHHHHHHTTCSEEEECSSC--------------C-------TTBCH--HH--H-------------TCC-CC----C-
T ss_pred HHHHHHHHHcCCCEEEECccC--------------C-------cceEE--ee--e-------------cCC-CC----C-
Confidence 467778889999998764111 1 00011 11 0 011 11 1
Q ss_pred hHHHHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 237 HVQTLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 237 ~~~~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+.+.++.+ ..++||++.+||++++|+.+++..|||+|++|++|..
T Consensus 321 -~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~ 370 (491)
T 1zfj_A 321 -QVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAG 370 (491)
T ss_dssp -HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred -cHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhC
Confidence 1123333333 3589999999999999999999999999999999984
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.8e-05 Score=71.67 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=87.0
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-----------CCChhhHHHHHHHHHHcCCCeEEE-eCCCChH
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-----------DVPLEETESLQKEAMKNKIELVLF-TTPTTPT 205 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-----------Dlp~ee~~~~~~~~~~~gi~~I~l-isp~t~~ 205 (311)
.+.|++..-....++.+..+.+.+.+...|++++.+. |..++...+..+.+++.++.++.- +.+..+.
T Consensus 116 ~d~pv~~~~~~~q~~~~~~~~~~~a~~~~~~~a~~i~~n~~~~~~~~~~~~~~~~~~~i~~vr~~~~Pv~vK~v~~g~~~ 195 (332)
T 1vcf_A 116 PKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSR 195 (332)
T ss_dssp SSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCH
T ss_pred CCceeecccChhhhhccChHHHHHHHhhcCCCceeeccchHHHHhcCCCccHHHHHHHHHHHHcCCCCEEEEecCCCCCH
Confidence 5788765433222333445556665566688876431 111111234444444455554443 3333444
Q ss_pred HHHHHHHHhCCceEEE-EecCCccC-C-----CC----------CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHH
Q 021527 206 DRMKAIVEASEGFVYL-VSSIGVTG-A-----RA----------SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQ 267 (311)
Q Consensus 206 eri~~i~~~a~gfiY~-vs~~G~TG-~-----~~----------~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~ 267 (311)
+..+... ..|..++ ++..|.|. . +. .......+.+.++++.+ ++||++.+||++++++.+
T Consensus 196 e~a~~~~--~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k 273 (332)
T 1vcf_A 196 EAALALR--DLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAK 273 (332)
T ss_dssp HHHHHHT--TSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHH
T ss_pred HHHHHHH--HcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHH
Confidence 4443332 3455555 34333221 0 11 11223456788888877 799999999999999999
Q ss_pred HHHcCCcEEEEhhHhhchh
Q 021527 268 VAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 268 v~~~GADGvIVGSaiv~~~ 286 (311)
++..|||+|-+|++++..+
T Consensus 274 al~~GAd~V~igr~~l~~~ 292 (332)
T 1vcf_A 274 ALALGADLLAVARPLLRPA 292 (332)
T ss_dssp HHHHTCSEEEECGGGHHHH
T ss_pred HHHhCCChHhhhHHHHHHH
Confidence 9999999999999999766
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.5e-05 Score=70.29 Aligned_cols=187 Identities=12% Similarity=0.117 Sum_probs=114.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|||+|-+|... +.-|.+ .. ++.++..++.+++..++||.+.+|-
T Consensus 35 ~~~~a~~~A~~~v~~GAdiIDIg~g~--~~v~~~---ee----------m~rvv~~i~~~~~~~~vpisIDT~~------ 93 (300)
T 3k13_A 35 KYDEALSIARQQVEDGALVIDVNMDD--GLLDAR---TE----------MTTFLNLIMSEPEIARVPVMIDSSK------ 93 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCC--TTSCHH---HH----------HHHHHHHHHTCHHHHTSCEEEECSC------
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCC--CCCCHH---HH----------HHHHHHHHHHhhhcCCCeEEEeCCC------
Confidence 45788999999999999999999732 222321 11 1234556665555678999999873
Q ss_pred CHHHHHHHHHH--cCCcEEEecCCChh----hHHHHHHHHHHcCCCeEEEeC-----CCChHHHH------HHHHHhCCc
Q 021527 155 GVDNFMSTVRD--IGIRGLVVPDVPLE----ETESLQKEAMKNKIELVLFTT-----PTTPTDRM------KAIVEASEG 217 (311)
Q Consensus 155 g~~~fi~~~~~--aGadGviipDlp~e----e~~~~~~~~~~~gi~~I~lis-----p~t~~eri------~~i~~~a~g 217 (311)
.+-++.+.+ +|++ |+.|+..+ +..++.+.++++|..+|.+.. |.|.++|+ .+.+....|
T Consensus 94 --~~V~eaaL~~~~Ga~--iINdIs~~~~d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~G 169 (300)
T 3k13_A 94 --WEVIEAGLKCLQGKS--IVNSISLKEGEEVFLEHARIIKQYGAATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVG 169 (300)
T ss_dssp --HHHHHHHHHHCSSCC--EEEEECSTTCHHHHHHHHHHHHHHTCEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHhcCCCC--EEEeCCcccCChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 234555655 6876 56776654 234678899999998777653 66665543 222112346
Q ss_pred e----EEEEecCCccCCCCCC----CchHHHHHHHHhhcC-CCcEEEe-----eCCCC----HHH-----HHHHHHcCCc
Q 021527 218 F----VYLVSSIGVTGARASI----SGHVQTLLREIKESS-TKPVAVG-----FGISK----PEH-----VQQVAGWGAD 274 (311)
Q Consensus 218 f----iY~vs~~G~TG~~~~~----~~~~~~~l~~vk~~~-~~Pv~vG-----fGIst----~e~-----v~~v~~~GAD 274 (311)
+ |++-...|.-|....- +..+.+.++++|+.. +.|+.+| ||... .+- +....+.|.|
T Consensus 170 i~~~~IilDPgig~~gk~~~~~~~~~~~~l~~l~~lk~~lPg~pvl~G~SnkSfglp~~~~~R~~~n~~fl~~ai~~Gld 249 (300)
T 3k13_A 170 FNPHDIIFDPNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNLSFSFRGNNYIREAMHAVFLYHAIQQGMD 249 (300)
T ss_dssp CCGGGEEEECCCCCCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGGGGGGGGTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHEEEeCCCCccCCChHHhhHHHHHHHHHHHHHHHhCCCCCEEEEECcccccCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 5 7776655533322111 223455566677555 8899886 77742 111 2234578999
Q ss_pred EEEEhhHhhchh
Q 021527 275 GVIVGSAMVKLL 286 (311)
Q Consensus 275 GvIVGSaiv~~~ 286 (311)
.+||=..=...+
T Consensus 250 ~~Ivn~~~~~~~ 261 (300)
T 3k13_A 250 MGIVNPGTSVLY 261 (300)
T ss_dssp EEEECCC-CCCG
T ss_pred EEecCcchhhHH
Confidence 999965433333
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4e-05 Score=73.93 Aligned_cols=167 Identities=17% Similarity=0.207 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~ 154 (311)
.++-+++++.|++.|+|.||+|+|-..| +.++.++.+++. .+.++..+. .
T Consensus 24 ~~~k~~ia~~L~~~Gv~~IE~g~p~~~~----------------------~~~~~~~~i~~~~~~~~v~~~~-------r 74 (382)
T 2ztj_A 24 TQDKVEIAKALDEFGIEYIEVTTPVASP----------------------QSRKDAEVLASLGLKAKVVTHI-------Q 74 (382)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCTTSCH----------------------HHHHHHHHHHTSCCSSEEEEEE-------E
T ss_pred HHHHHHHHHHHHHcCcCEEEEcCCcCCH----------------------HHHHHHHHHHhcCCCcEEEEEc-------c
Confidence 4778999999999999999999876543 113455555543 344444332 2
Q ss_pred CHHHHHHHHHHcCCcEEEecCC-----------Ch----hhHHHHHHHHHHcC--CCeEEEeC--CCChHHHHHHHHHhC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDV-----------PL----EETESLQKEAMKNK--IELVLFTT--PTTPTDRMKAIVEAS 215 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDl-----------p~----ee~~~~~~~~~~~g--i~~I~lis--p~t~~eri~~i~~~a 215 (311)
+..+-++.+.++|++.+-+.+- .. +...+..+.++++| ++..+... +.++.+.+.++++..
T Consensus 75 ~~~~di~~a~~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~ 154 (382)
T 2ztj_A 75 CRLDAAKVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAV 154 (382)
T ss_dssp SCHHHHHHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHH
T ss_pred cChhhHHHHHHcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 2345588899999998877431 12 33566778889999 77555432 333344444443321
Q ss_pred ---CceEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEE----eeCCCCHHHHHHHHHcCCcEEE
Q 021527 216 ---EGFVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAV----GFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 216 ---~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~v----GfGIst~e~v~~v~~~GADGvI 277 (311)
-..+++....|. ..|..+.++++.+++. .++|+-+ .+|... .+.-..+++|||.|=
T Consensus 155 ~~~a~~i~l~DT~G~-----~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAv-AN~laAv~aGa~~vd 219 (382)
T 2ztj_A 155 APYVDRVGLADTVGV-----ATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAI-ANAYEAIEAGATHVD 219 (382)
T ss_dssp GGGCSEEEEEETTSC-----CCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHH-HHHHHHHHTTCCEEE
T ss_pred HHhcCEEEecCCCCC-----CCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHH-HHHHHHHHhCCCEEE
Confidence 334555554443 3467788999999987 6778766 366664 455566779999773
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=5.4e-06 Score=77.77 Aligned_cols=154 Identities=18% Similarity=0.261 Sum_probs=97.5
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC----CCHHHHHHHHHHhhccCC
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG----TNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G----~~~~~~~~~i~~ir~~~~ 139 (311)
.++.=|. | .+.+.+.+.++.+.++ +|.|||..- .|.. .+ +.-+.| .+.+.+.++++.+++.++
T Consensus 60 ~~~~QL~-g-~~~~~~~~aa~~a~~~-~d~Iein~g--cP~~---~~-----r~~~~G~~l~~~~~~~~eiv~~v~~~~~ 126 (318)
T 1vhn_A 60 NVAVQIF-G-SEPNELSEAARILSEK-YKWIDLNAG--CPVR---KV-----VKEGAGGALLKDLRHFRYIVRELRKSVS 126 (318)
T ss_dssp TEEEEEE-C-SCHHHHHHHHHHHTTT-CSEEEEEEC--CCCH---HH-----HHTTCGGGGGSCHHHHHHHHHHHHHHCS
T ss_pred eEEEEeC-C-CCHHHHHHHHHHHHHh-CCEEEEECC--CCcH---hc-----CCCCcccchhhCHHHHHHHHHHHHHhhC
Confidence 4555444 3 2458999999999999 999999432 2210 11 111122 255677889999998888
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+||.+-.-.. +..-...++++.+.++|+|+|++..- +.. .
T Consensus 127 ~pv~vKir~G-~~~~~~~~~a~~l~~~G~d~i~v~g~--------------------------~~~----------~--- 166 (318)
T 1vhn_A 127 GKFSVKTRLG-WEKNEVEEIYRILVEEGVDEVFIHTR--------------------------TVV----------Q--- 166 (318)
T ss_dssp SEEEEEEESC-SSSCCHHHHHHHHHHTTCCEEEEESS--------------------------CTT----------T---
T ss_pred CCEEEEecCC-CChHHHHHHHHHHHHhCCCEEEEcCC--------------------------Ccc----------c---
Confidence 9998863110 00001125666666666666665421 100 0
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhc
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVK 284 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~ 284 (311)
+.+|. .. .+.++++++ ++||++.+||.|++++.++++ .|||+|.+|++++.
T Consensus 167 ------~~~~~-----~~-~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~ 218 (318)
T 1vhn_A 167 ------SFTGR-----AE-WKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIG 218 (318)
T ss_dssp ------TTSSC-----CC-GGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTT
T ss_pred ------cCCCC-----cC-HHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHh
Confidence 01111 11 145777777 899999999999999999998 69999999998654
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=5.1e-05 Score=72.24 Aligned_cols=151 Identities=16% Similarity=0.207 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHCCCCEEEEc-----------CCCCCCCCChHHHHHHHHHHHHcCCCH----HHHHHHHHHhhccC--CC
Q 021527 78 TTAEALKLLDSCGSDIIELG-----------VPYSDPLADGPVIQAAATRSLARGTNF----NAILSMLKEVVPQM--SC 140 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG-----------~PfsDP~aDGp~Iq~a~~~Al~~G~~~----~~~~~~i~~ir~~~--~i 140 (311)
.+.+.++.+.++|.|+|||- -|.++---| +.|-++ +-.+++++.+|+.+ +.
T Consensus 144 ~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D------------~yGGslenR~rf~~eiv~aVr~avg~d~ 211 (343)
T 3kru_A 144 AFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKD------------EYGNSIENRARFLIEVIDEVRKNWPENK 211 (343)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCS------------TTSSSHHHHTHHHHHHHHHHHHTSCTTS
T ss_pred HHHHHHhhccccCCceEEEecccchhHHHhhcccccccch------------hhccchHhHHHHHHHHHHHHHhcCCccC
Confidence 57888888999999999995 333322223 122222 23477888888886 67
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
||.+-.-.+... + + ..+.++..++.+.+.+. ++.+-+....+... .
T Consensus 212 pv~vRls~~~~~--------~-------~-----g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~---------~---- 257 (343)
T 3kru_A 212 PIFVRVSADDYM--------E-------G-----GINIDMMVEYINMIKDK-VDLIDVSSGGLLNV---------D---- 257 (343)
T ss_dssp CEEEEEECCCSS--------T-------T-----SCCHHHHHHHHHHHTTT-CSEEEEECCCSSCC---------C----
T ss_pred CeEEEeechhhh--------c-------c-----CccHHHHHHHHHHhhcc-ccEEeccCCceEee---------e----
Confidence 888853221110 0 1 13456666677777776 77665543222100 0
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.. ..+....++++++|+.+++||++.+||++++++.++++.| ||.|.+|.+++.
T Consensus 258 ------~~----~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~la 312 (343)
T 3kru_A 258 ------IN----LYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALGRELLR 312 (343)
T ss_dssp ------CC----CCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ------ec----ccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhc
Confidence 00 0011124678889998899999999999999999999998 999999999875
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-05 Score=74.48 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCChHHHHHHHHHHHHcCCCH----HHHHHHHHHhhccCCC-
Q 021527 77 STTAEALKLLDSCGSDIIELGV-----------PYSDPLADGPVIQAAATRSLARGTNF----NAILSMLKEVVPQMSC- 140 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aDGp~Iq~a~~~Al~~G~~~----~~~~~~i~~ir~~~~i- 140 (311)
+.+.+.++.+.++|+|+|||-. |.++---| +.|-++ +-.+++++.+|+.+.-
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D------------~yGGslenr~r~~~eiv~avr~~vg~~ 228 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSD------------EYGGSLENRLRFLDEVVAALVDAIGAE 228 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCS------------TTSSSHHHHTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCc------------ccCcchhhhHHHHHHHHHHHHHHcCCC
Confidence 5788888889999999999943 43222222 122222 2346777888876532
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
||.+-.-.+..+. |.+ ...+.++..++.+.+.+.|++.+-+...+.. +
T Consensus 229 pv~vris~~~~~~-------------~~~----~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~------------~--- 276 (365)
T 2gou_A 229 RVGVRLAPLTTLN-------------GTV----DADPILTYTAAAALLNKHRIVYLHIAEVDWD------------D--- 276 (365)
T ss_dssp GEEEEECSSCCTT-------------SCC----CSSHHHHHHHHHHHHHHTTCSEEEEECCBTT------------B---
T ss_pred cEEEEEccccccC-------------CCC----CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcC------------C---
Confidence 8877321110000 000 0123455666677777777776665443210 0
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.. ..+ .++++++|+.+++||++.+|| +++++.++++.| ||+|-+|++++.
T Consensus 277 ------~~----~~~---~~~~~~i~~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~ 327 (365)
T 2gou_A 277 ------AP----DTP---VSFKRALREAYQGVLIYAGRY-NAEKAEQAINDGLADMIGFGRPFIA 327 (365)
T ss_dssp ------CC----CCC---HHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred ------CC----Ccc---HHHHHHHHHHCCCcEEEeCCC-CHHHHHHHHHCCCcceehhcHHHHh
Confidence 00 111 257889999999999999999 799999999998 999999999886
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.18 E-value=3.7e-05 Score=73.64 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-Cc
Q 021527 77 STTAEALKLLDSCGSDIIELGV-----------PYSDPLAD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CP 141 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iP 141 (311)
+.+.+.++.+.++|+|+|||-. |.++---| |. +.+- .+-.+++++.+|+.+. -|
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGs-lenr----------~r~~~eiv~avr~~vg~~~ 229 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGS-VENR----------ARLVLEVVDAVCNEWSADR 229 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHH----------THHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcc-hhcC----------hhhHHHHHHHHHHhcCCCc
Confidence 4788888889999999999932 55332233 32 2211 1234678888887763 28
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.+..+. |. | -...+.++..++.+.+.+.|++.+-+...+.. ..
T Consensus 230 v~vrls~~~~~~-~~----------~-----~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-----------~~---- 278 (364)
T 1vyr_A 230 IGIRVSPIGTFQ-NV----------D-----NGPNEEADALYLIEELAKRGIAYLHMSETDLA-----------GG---- 278 (364)
T ss_dssp EEEEECCSSCBT-TB----------C-----CCTTHHHHHHHHHHHHHHTTCSEEEEECCBTT-----------BC----
T ss_pred EEEEEccccccc-cc----------c-----CCCCCHHHHHHHHHHHHHhCCCEEEEecCccc-----------CC----
Confidence 877321110010 00 0 00113345556666667777776655433210 00
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
. ..+ .++++++|+.+++||++++|| +++++.++++.| ||+|-+|.+++.
T Consensus 279 ------~----~~~---~~~~~~v~~~~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~ 328 (364)
T 1vyr_A 279 ------K----PYS---EAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIA 328 (364)
T ss_dssp ------C----CCC---HHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ------C----ccc---HHHHHHHHHHCCCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHh
Confidence 0 011 357889999999999999999 799999999998 999999999875
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=98.17 E-value=5.6e-05 Score=71.42 Aligned_cols=198 Identities=16% Similarity=0.217 Sum_probs=127.4
Q ss_pred hhHHHHHHHHH-HCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 77 STTAEALKLLD-SCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~-~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
+...++++.+. +.|||+|-||...++|-++. ++.++..+.++++++.+++|+.+.|.-|+-+.
T Consensus 80 ~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~--------------vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~-- 143 (323)
T 4djd_D 80 NEPGRWAQKCVAEYGADLIYLKLDGADPEGAN--------------HSVDQCVATVKEVLQAVGVPLVVVGCGDVEKD-- 143 (323)
T ss_dssp TCHHHHHHHHHHTTCCSEEEEECGGGCTTTTC--------------CCHHHHHHHHHHHHHHCCSCEEEECCSCHHHH--
T ss_pred HhHHHHHHHHHHHcCCCEEEEcCccCCCCCCC--------------CCHHHHHHHHHHHHhhCCceEEEECCCCCCCC--
Confidence 45789999998 99999999999999995442 45556667888888889999999966564433
Q ss_pred HHHHHHHHHHcCCcE-EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH--hCCce----EEEEecCCcc
Q 021527 156 VDNFMSTVRDIGIRG-LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE--ASEGF----VYLVSSIGVT 228 (311)
Q Consensus 156 ~~~fi~~~~~aGadG-viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~--~a~gf----iY~vs~~G~T 228 (311)
.+-++.+.++|++. -++.|+..+...++.+.+++||..+|.+ +|.. .+.++++.+ ...|+ |++-...|.-
T Consensus 144 -~eV~eaAleagag~~~lINsv~~~~~~~m~~laa~~g~~vVlm-h~~d-~~~~~~l~~~a~~~GI~~e~IIlDPg~g~f 220 (323)
T 4djd_D 144 -HEVLEAVAEAAAGENLLLGNAEQENYKSLTAACMVHKHNIIAR-SPLD-INICKQLNILINEMNLPLDHIVIDPSIGGL 220 (323)
T ss_dssp -HHHHHHHHHHTTTSCCEEEEEBTTBCHHHHHHHHHHTCEEEEE-CSSC-HHHHHHHHHHHHTTTCCGGGEEEECCCCCT
T ss_pred -HHHHHHHHHhcCCCCCeEEECCcccHHHHHHHHHHhCCeEEEE-ccch-HHHHHHHHHHHHHcCCCHHHEEEeCCCccc
Confidence 34667788888763 2455555444456778889999876665 4533 233333322 24455 7776665544
Q ss_pred CCCCCCCchHHHHHHHHhh-------cCCCcEEEeeCC---CCH--------------H----------HHHHHHHcCCc
Q 021527 229 GARASISGHVQTLLREIKE-------SSTKPVAVGFGI---SKP--------------E----------HVQQVAGWGAD 274 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~-------~~~~Pv~vGfGI---st~--------------e----------~v~~v~~~GAD 274 (311)
|.. .....+.++++|. ..+.|+++|-.- ... + .+..++..|+|
T Consensus 221 gk~---~e~~l~~l~~ir~~al~~~~~lg~PvL~GvSrksf~~ke~~~~~~~~~~~g~~~~~~~~~E~~~a~~~~~~~~~ 297 (323)
T 4djd_D 221 GYG---IEYSFSIMERIRLGALQGDKMLSMPVICTVGYEAWRAKEASAPVSEYPGWGKETERGILWEAVTATALLQAGAH 297 (323)
T ss_dssp TTT---HHHHHHHHHHHHHHHHHTCGGGCSCBEEEHHHHHHTSHHHHCCTTTCGGGCCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred cCC---HHHHHHHHHHHHHHhhcccccCCCCEEEecchhhhhhccccccccccccccccchhhHHHHHHHHHHHHHhcCC
Confidence 432 1234566777764 358999998421 001 0 12334456677
Q ss_pred EEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 275 GVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 275 GvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.+|+ + ..+.++.++++++.|..
T Consensus 298 i~v~-----~-------~p~~~~~~~~~~~~l~~ 319 (323)
T 4djd_D 298 ILLM-----R-------HPEAVARVKENIDQLMV 319 (323)
T ss_dssp EEEE-----C-------CHHHHHHHHHHHHHHTS
T ss_pred EEEE-----c-------CHHHHHHHHHHHHHHhh
Confidence 7765 1 13567788888887753
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-05 Score=73.23 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=102.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~ 154 (311)
.++-+++++.|.+.|+|.||+|+|.+.| .+ ++.++++++. .+..+..++-.|
T Consensus 27 ~~~Kl~ia~~L~~~Gv~~IE~g~p~~~~---~d-------------------~e~v~~i~~~~~~~~i~~l~r~~----- 79 (325)
T 3eeg_A 27 TEEKIIVAKALDELGVDVIEAGFPVSSP---GD-------------------FNSVVEITKAVTRPTICALTRAK----- 79 (325)
T ss_dssp TTHHHHHHHHHHHHTCSEEEEECTTSCH---HH-------------------HHHHHHHHHHCCSSEEEEECCSC-----
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCH---hH-------------------HHHHHHHHHhCCCCEEEEeecCC-----
Confidence 4677899999999999999999987655 10 1344454443 345565554333
Q ss_pred CHHHHHHHHHHc----CCcEEEecC------------CC----hhhHHHHHHHHHHcCCCeEEEeC--CCChHHHHHHHH
Q 021527 155 GVDNFMSTVRDI----GIRGLVVPD------------VP----LEETESLQKEAMKNKIELVLFTT--PTTPTDRMKAIV 212 (311)
Q Consensus 155 g~~~fi~~~~~a----GadGviipD------------lp----~ee~~~~~~~~~~~gi~~I~lis--p~t~~eri~~i~ 212 (311)
.++++.+.++ |++.|.+.+ .. ++...+..+.++++|+.+.+... ..++.+.+.+++
T Consensus 80 --~~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~ 157 (325)
T 3eeg_A 80 --EADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMV 157 (325)
T ss_dssp --HHHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHH
T ss_pred --HHHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHH
Confidence 4566666665 999876632 11 13355677889999987655431 123345544444
Q ss_pred Hh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 213 EA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST----KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 213 ~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+. .-..+++.. +.|. ..|..+.++++.+++.++ +|+-+ .+|... .+....+++|||.|
T Consensus 158 ~~~~~~G~~~i~l~D---T~G~--~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~-AN~laA~~aGa~~v 227 (325)
T 3eeg_A 158 EAVIEAGADVVNIPD---TTGY--MLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLAT-ANSLAALQNGARQV 227 (325)
T ss_dssp HHHHHHTCSEEECCB---SSSC--CCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHH-HHHHHHHHHTCCEE
T ss_pred HHHHhcCCCEEEecC---ccCC--cCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHH-HHHHHHHHhCCCEE
Confidence 42 223344444 4444 356778899999998764 56654 345543 45666677999876
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=4.6e-05 Score=78.00 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEc--C---------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCc
Q 021527 77 STTAEALKLLDSCGSDIIELG--V---------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCP 141 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG--~---------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iP 141 (311)
+.+.+.++.+.++|.|.|||- . |.++---| |--+.+- .+-.+++++.+|+.+ +.|
T Consensus 141 ~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r----------~r~~~eiv~avr~~vG~~~~ 210 (671)
T 1ps9_A 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNR----------MRFAVEVVRAVRERVGNDFI 210 (671)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHH----------HHHHHHHHHHHHHHHCSSSE
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHH----------HHHHHHHHHHHHHHcCCCce
Confidence 468888999999999999993 2 44433333 1112211 233577888888875 678
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+.+-.-.+.... ...+.++..++.+.+.+.|++.+-+.. .+.+.+ +
T Consensus 211 v~vrls~~~~~~--------------------~g~~~~~~~~~a~~l~~~g~d~i~v~~-~~~~~~----------~--- 256 (671)
T 1ps9_A 211 IIYRLSMLDLVE--------------------DGGTFAETVELAQAIEAAGATIINTGI-GWHEAR----------I--- 256 (671)
T ss_dssp EEEEEEEECCST--------------------TCCCHHHHHHHHHHHHHHTCSEEEEEE-CBTTCS----------S---
T ss_pred EEEEECccccCC--------------------CCCCHHHHHHHHHHHHhcCCCEEEcCC-Cccccc----------c---
Confidence 766321111100 012345555666666667776654422 110000 0
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.+.....-+....++++++|+.+++||++.+||.+++++.++++.| ||+|-+|+++..
T Consensus 257 -----~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~ 315 (671)
T 1ps9_A 257 -----PTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (671)
T ss_dssp -----CSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred -----ccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHh
Confidence 0000000011234678999999999999999999999999999998 999999999885
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00013 Score=68.33 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=109.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+.-+++++.|++.|+|.||+|.| +.|-.- |... ..+ +.++.+++..++++..+. .|
T Consensus 26 ~~e~k~~i~~~L~~~Gv~~IE~g~~-~~~~~~-p~~~-----------d~~---~~~~~~~~~~~~~~~~l~-~~----- 83 (307)
T 1ydo_A 26 ATEDKITWINQLSRTGLSYIEITSF-VHPKWI-PALR-----------DAI---DVAKGIDREKGVTYAALV-PN----- 83 (307)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEEEC-SCTTTC-GGGT-----------THH---HHHHHSCCCTTCEEEEEC-CS-----
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC-cCcccc-cccC-----------CHH---HHHHHhhhcCCCeEEEEe-CC-----
Confidence 5688899999999999999999974 344211 1110 111 244555544566666654 23
Q ss_pred CHHHHHHHHHHcCCcEEEecCCC------------h----hhHHHHHHHHHHcCCCeEEEeC-----C---CChHHHHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVP------------L----EETESLQKEAMKNKIELVLFTT-----P---TTPTDRMKA 210 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp------------~----ee~~~~~~~~~~~gi~~I~lis-----p---~t~~eri~~ 210 (311)
.+-++.+.++|++.+.+.+-. . +...+..+.++++|+++-..++ | .++.+.+.+
T Consensus 84 --~~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~ 161 (307)
T 1ydo_A 84 --QRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIR 161 (307)
T ss_dssp --HHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHH
T ss_pred --HHhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHH
Confidence 356788889999998875311 1 2346678888999987543221 2 133444433
Q ss_pred HH----HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 211 IV----EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 211 i~----~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++ +..-..+++....|. ..|..+.++++.+++.. ++|+-+ .+|... .+....+++||+.|
T Consensus 162 ~~~~~~~~Ga~~i~l~DT~G~-----~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~-AN~laAv~aGa~~v 230 (307)
T 1ydo_A 162 LSEALFEFGISELSLGDTIGA-----ANPAQVETVLEALLARFPANQIALHFHDTRGTAL-ANMVTALQMGITVF 230 (307)
T ss_dssp HHHHHHHHTCSCEEEECSSCC-----CCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHH-HHHHHHHHHTCCEE
T ss_pred HHHHHHhcCCCEEEEcCCCCC-----cCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHH-HHHHHHHHhCCCEE
Confidence 33 334445777765543 34677899999999987 578766 466664 45666778999877
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.8e-05 Score=69.20 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=98.5
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP 150 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~ 150 (311)
...|+.+...++++.+.+. +++++|.||=. .|| +.++++|+. +.++++..-+.+
T Consensus 16 ~D~~~~~~a~~i~~~~~~~--~~~Kvg~~l~~---~G~--------------------~~v~~l~~~-~~~v~lD~K~~D 69 (213)
T 1vqt_A 16 VLSLDMEDPIRFIDENGSF--EVVKVGHNLAI---HGK--------------------KIFDELAKR-NLKIILDLKFCD 69 (213)
T ss_dssp EEECCSSSHHHHHHHHCCC--SEEEECHHHHT---TCT--------------------HHHHHHHTT-TCEEEEEEEECS
T ss_pred CCCCCHHHHHHHHHHhCCC--CEEEECHHHHh---hCH--------------------HHHHHHHHC-CCCEEEEeeccc
Confidence 3568889999999999554 88999987722 332 256666664 678888765443
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCC-ChhhHHHHHHHHHHcCCCeEEEeCCCChH-----HHHHHHHHh-CCceEEEEe
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDV-PLEETESLQKEAMKNKIELVLFTTPTTPT-----DRMKAIVEA-SEGFVYLVS 223 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDl-p~ee~~~~~~~~~~~gi~~I~lisp~t~~-----eri~~i~~~-a~gfiY~vs 223 (311)
+-.+ ....++.+.+.|+|.+.+.-. ..+-...+.+.+ . .....+..-|+. +....+++. ..|+. ++.
T Consensus 70 I~nT-~~~~v~~~~~~GaD~vTvh~~~G~~~l~~~~~~~---~-~~~~~V~~lts~~~~l~~~v~~~a~~~e~G~d-vV~ 143 (213)
T 1vqt_A 70 IPST-VERSIKSWDHPAIIGFTVHSCAGYESVERALSAT---D-KHVFVVVKLTSMEGSLEDYMDRIEKLNKLGCD-FVL 143 (213)
T ss_dssp CHHH-HHHHHHHHCCTTEEEEEEEGGGCHHHHHHHHHHC---S-SEEEEECCCTTSCCCHHHHHHHHHHHHHHTCE-EEC
T ss_pred CchH-HHHHHHHHHHCCCCEEEEeccCCHHHHHHHHHhc---C-CCeEEEEEeCCCCHHHHHHHHHHHHHhcCCCE-EEE
Confidence 3222 245677888899999999632 222222333222 2 223333322211 221112111 12444 332
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHH----------HHHHHHcCCcEEEEhhHhhch
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEH----------VQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~----------v~~v~~~GADGvIVGSaiv~~ 285 (311)
+ + +.++++|+.++.| ++-.||+ ++. ..+ .++|||++|||..|.+.
T Consensus 144 -----~------~---~~~~~ir~~~~~~-~v~pGI~-~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a 198 (213)
T 1vqt_A 144 -----P------G---PWAKALREKIKGK-ILVPGIR-MEVKADDQKDVVTLEE-MKGIANFAVLGREIYLS 198 (213)
T ss_dssp -----C------H---HHHHHHTTTCCSC-EEECCBC----------CCBCHHH-HTTTCSEEEESHHHHTS
T ss_pred -----c------H---HHHHHHHHHCCCC-EEECCCC-CCCCccchhhcCCHHH-HHCCCCEEEEChhhcCC
Confidence 0 1 3578888887667 5656886 333 577 89999999999999983
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.5e-05 Score=74.83 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC-cEE
Q 021527 78 TTAEALKLLDSCGSDIIELGV-----------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC-PIA 143 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i-Pii 143 (311)
.+.+.++.+.++|.|.|||-. |.++---| |-.+.+- .+-.+++++.+|+.+.- ||.
T Consensus 162 ~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR----------~rf~~evv~aVr~~vg~~~v~ 231 (361)
T 3gka_A 162 AFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENR----------ARLLLEVVDAAIDVWSAARVG 231 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHH----------SHHHHHHHHHHHHHHCGGGEE
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhc----------HHHHHHHHHHHHHHcCCCeEE
Confidence 577888899999999999942 44333333 1112111 12346788888876532 877
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+-.-.+.. .+|+ -...+.++..++.+.+.+.|++.+-+..++
T Consensus 232 vRls~~~~----------------~~g~-~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~--------------------- 273 (361)
T 3gka_A 232 VHLAPRGD----------------AHTM-GDSDPAATFGHVARELGRRRIAFLFARESF--------------------- 273 (361)
T ss_dssp EEECTTCC----------------SSSC-CCSCHHHHHHHHHHHHHHTTCSEEEEECCC---------------------
T ss_pred Eecccccc----------------cCCC-CCCCcHHHHHHHHHHHHHcCCCEEEECCCC---------------------
Confidence 74211100 0111 011224556667777778888777655432
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
+|. ++++++|+.+++||++.+|| +++++.++++.| ||+|-+|.+++.
T Consensus 274 ----~~~---------~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~la 321 (361)
T 3gka_A 274 ----GGD---------AIGQQLKAAFGGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIA 321 (361)
T ss_dssp ----STT---------CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ----CCH---------HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 010 24677888888999999999 899999999988 999999999875
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.9e-05 Score=73.87 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-Cc
Q 021527 77 STTAEALKLLDSCGSDIIELGV-----------PYSDPLAD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CP 141 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iP 141 (311)
+.+.+.++.+.++|+|+|||-. |.++---| |. +.+- .+-.+++++.+|+.+. -|
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGs-lenR----------~r~~~eiv~aVr~avg~~~ 234 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGS-IENR----------ARFPLEVVDAVAEVFGPER 234 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSS-HHHH----------HHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcc-hhhc----------hHHHHHHHHHHHHHcCCCc
Confidence 5788889899999999999932 55443333 22 2211 2334677888887653 28
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.+..+. |.+ ...+.++..++.+.+.+.|++.|-+...+.. .. +
T Consensus 235 v~vrls~~~~~~-------------~~~----~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~-~~------------~- 283 (377)
T 2r14_A 235 VGIRLTPFLELF-------------GLT----DDEPEAMAFYLAGELDRRGLAYLHFNEPDWI-GG------------D- 283 (377)
T ss_dssp EEEEECTTCCCT-------------TCC----CSCHHHHHHHHHHHHHHTTCSEEEEECCC-------------------
T ss_pred EEEEeccccccC-------------CCC----CCCCHHHHHHHHHHHHHcCCCEEEEeCCccc-CC------------C-
Confidence 887531110000 110 0123456667777777888887766543311 00 0
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.+. + .++++++|+.+++||++.+|| +++++.++++.| ||+|-+|.+++.
T Consensus 284 ------~~~----~---~~~~~~ik~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~ 333 (377)
T 2r14_A 284 ------ITY----P---EGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIA 333 (377)
T ss_dssp -------CC----C---TTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ------Ccc----h---HHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHCCCceEEeecHHHHh
Confidence 010 1 246888899899999999999 599999999998 999999999885
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.9e-05 Score=73.57 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-CcEE
Q 021527 78 TTAEALKLLDSCGSDIIELGV-----------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CPIA 143 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iPii 143 (311)
.+.+.++.+.++|.|+|||-. |.++---| |--+.+- .+-.+++++.+|+.+. -||.
T Consensus 154 ~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR----------~rf~~eiv~aVr~~vg~~~v~ 223 (362)
T 4ab4_A 154 AYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENR----------ARLLLEVTDAAIEVWGAQRVG 223 (362)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHH----------HHHHHHHHHHHHHHHCGGGEE
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhH----------HHHHHHHHHHHHHhcCCCceE
Confidence 577888889999999999942 44333333 1112211 2234677788887643 2877
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+-.-.+.. .+|+ -..-+.++..++.+.+.+.|++.+-+..++
T Consensus 224 vRls~~~~----------------~~g~-~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~--------------------- 265 (362)
T 4ab4_A 224 VHLAPRAD----------------AHDM-GDADRAETFTYVARELGKRGIAFICSRERE--------------------- 265 (362)
T ss_dssp EEECTTCC----------------SSSC-CCTTHHHHHHHHHHHHHHTTCSEEEEECCC---------------------
T ss_pred EEeecccc----------------cccc-CCCCcHHHHHHHHHHHHHhCCCEEEECCCC---------------------
Confidence 74311100 0110 001123456667777778888777655432
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
+|. ++++++|+.+++||++.+|+ +++++.++++.| ||+|-+|.+++.
T Consensus 266 ----~~~---------~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~la 313 (362)
T 4ab4_A 266 ----ADD---------SIGPLIKEAFGGPYIVNERF-DKASANAALASGKADAVAFGVPFIA 313 (362)
T ss_dssp ----CTT---------CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ----CCH---------HHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 010 24677888888999999999 899999999988 999999998875
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=98.09 E-value=4.1e-05 Score=87.11 Aligned_cols=182 Identities=17% Similarity=0.231 Sum_probs=117.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC--CcEEEEe-cCcch-hccC
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS--CPIALFT-YYNPI-LKRG 155 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~--iPiilm~-Y~n~i-~~~g 155 (311)
.+.+-+..++|.=++--|-- ..+.+.+-+.|+++|+.++ .|+.+.. |+|+- ....
T Consensus 604 ~~lvaAvsnAGglg~l~~~~---------------------~~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~~~~~~~~ 662 (2051)
T 2uv8_G 604 PDFVAATTNAGYTIELAGGG---------------------YFSAAGMTAAIDSVVSQIEKGSTFGINLIYVNPFMLQWG 662 (2051)
T ss_dssp HHHHHHHHHTTCEEEEEGGG---------------------CCSHHHHHHHHHHHHHHSCTTCCEEEEEETTCTTHHHHH
T ss_pred HHHHHHHHcCCcEEEEccCC---------------------CCCHHHHHHHHHHHHHhcCCCCceEEEEeecChhhhhhh
Confidence 46677777777665543411 1344555567888887554 6887763 55652 2111
Q ss_pred HHHHHHHHHHcCCcE--EEec-CCC-hhhHHHHHHHHHHcCCCeEEEeCCCChH--HHHHHHHHhCCceEEEEecCCc-c
Q 021527 156 VDNFMSTVRDIGIRG--LVVP-DVP-LEETESLQKEAMKNKIELVLFTTPTTPT--DRMKAIVEASEGFVYLVSSIGV-T 228 (311)
Q Consensus 156 ~~~fi~~~~~aGadG--viip-Dlp-~ee~~~~~~~~~~~gi~~I~lisp~t~~--eri~~i~~~a~gfiY~vs~~G~-T 228 (311)
. +.++.+.+.|+.- +.+. ..| .|+..++ ++..|+++|.+.. .+.. ....++++....++.++...|. -
T Consensus 663 ~-~~~~~~~~~gv~i~~v~~~ag~p~~~~~~~~---i~~lG~~vi~~~~-~~~~a~~~~~~~~~~g~d~~ii~~~~G~ea 737 (2051)
T 2uv8_G 663 I-PLIKELRSKGYPIQFLTIGAGVPSLEVASEY---IETLGLKYLGLKP-GSIDAISQVINIAKAHPNFPIALQWTGGRG 737 (2051)
T ss_dssp H-HHHHHHHHTTCSEEEEEEESSCCCHHHHHHH---HHHSCCSCEEECC-CSHHHHHHHHHHHHHSTTSCEEEEECCSSC
T ss_pred H-HHHHHHHHcCCCcceEEecCCCCchhhHHHH---HHHcCCEEEEecC-chHHHHHHHHHHHHhCCCceeEEEEEccCc
Confidence 2 6778888989754 7764 334 2444444 4555999887654 3332 2234455555566322222232 2
Q ss_pred CCCCC---CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH-----------HcCCcEEEEhhHhhchhh
Q 021527 229 GARAS---ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA-----------GWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 229 G~~~~---~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~-----------~~GADGvIVGSaiv~~~~ 287 (311)
|.+.+ +...+..++.++++..++||++++||.+.+.+...+ .+|||||.+||.|+-.-+
T Consensus 738 GGH~g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~E 810 (2051)
T 2uv8_G 738 GGHHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKE 810 (2051)
T ss_dssp SEECCSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTT
T ss_pred CCCCCcccccccHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCcc
Confidence 22222 234456778999999999999999999999999999 899999999999998765
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-05 Score=71.92 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=104.8
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh-ccCCCcEEEEe------c
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV-PQMSCPIALFT------Y 147 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir-~~~~iPiilm~------Y 147 (311)
.++.+.+.+..+.+.|+|.|-+.--| .+.+. ...+ ...++|+++-. +
T Consensus 46 ~l~~~k~lv~~~~~~~~~avl~~~g~---------~~~a~-----------------~~~~~~~~~~glil~l~~~~~l~ 99 (304)
T 1to3_A 46 VLTDFKVNAAKILSPYASAVLLDQQF---------CYRQA-----------------VEQNAVAKSCAMIVAADDFIPGN 99 (304)
T ss_dssp HHHHHHHHHHHHHGGGCSEEEECTTT---------THHHH-----------------HHTTCSCTTSEEEEECEEEEEET
T ss_pred hhhhHHHHHHHHHhcCCCEEEeCHHH---------HHHHh-----------------hcccccCCCCcEEEEECCCCCCC
Confidence 56788999999999999999985111 11110 0011 22456766541 1
Q ss_pred Ccc----hhccCHHHHHHHHHHcCCcEEEe-----cCCCh----hhHHHHHHHHHHcCCCeEEEeCC--------CCh--
Q 021527 148 YNP----ILKRGVDNFMSTVRDIGIRGLVV-----PDVPL----EETESLQKEAMKNKIELVLFTTP--------TTP-- 204 (311)
Q Consensus 148 ~n~----i~~~g~~~fi~~~~~aGadGvii-----pDlp~----ee~~~~~~~~~~~gi~~I~lisp--------~t~-- 204 (311)
.++ +..+ +-.++.+.+.|+|+|-+ +|.+- ++..++.++|+++|+..+.-+-| ..+
T Consensus 100 ~~~~~~~l~~~--~~~ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~ 177 (304)
T 1to3_A 100 GIPVDNVVLDK--KINAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQ 177 (304)
T ss_dssp TEEEEEEEECS--SCCHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHH
T ss_pred CCccchhhccC--chhHHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhH
Confidence 011 1100 13577889999998853 34432 34677899999999987654421 122
Q ss_pred --HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc-EEEeeCCCCH----HHHHHHHHcCCcEEE
Q 021527 205 --TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP-VAVGFGISKP----EHVQQVAGWGADGVI 277 (311)
Q Consensus 205 --~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P-v~vGfGIst~----e~v~~v~~~GADGvI 277 (311)
.++++... ..|..|+-...++.+. +....+.+.++.....+.+| |++-+|++ + +++..+.+.|++|++
T Consensus 178 ~v~~aa~~a~--~lGaD~iKv~~~~~~~--g~~~~~~~vv~~~~~~~~~P~Vv~aGG~~-~~~~~~~~~~a~~aGa~Gv~ 252 (304)
T 1to3_A 178 AIIDAAKELG--DSGADLYKVEMPLYGK--GARSDLLTASQRLNGHINMPWVILSSGVD-EKLFPRAVRVAMEAGASGFL 252 (304)
T ss_dssp HHHHHHHHHT--TSSCSEEEECCGGGGC--SCHHHHHHHHHHHHHTCCSCEEECCTTSC-TTTHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHH--HcCCCEEEeCCCcCCC--CCHHHHHHHHHhccccCCCCeEEEecCCC-HHHHHHHHHHHHHcCCeEEE
Confidence 12232222 2455565222211111 11222333344333347899 99999994 5 469999999999999
Q ss_pred EhhHhhch
Q 021527 278 VGSAMVKL 285 (311)
Q Consensus 278 VGSaiv~~ 285 (311)
||+++...
T Consensus 253 vGRaI~q~ 260 (304)
T 1to3_A 253 AGRAVWSS 260 (304)
T ss_dssp ESHHHHGG
T ss_pred EehHHhCc
Confidence 99999975
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=8.7e-05 Score=70.34 Aligned_cols=167 Identities=16% Similarity=0.213 Sum_probs=106.2
Q ss_pred ChhhHHHHHH-HHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc------cC-CCcEEEEe
Q 021527 75 DLSTTAEALK-LLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP------QM-SCPIALFT 146 (311)
Q Consensus 75 ~~~~~~e~~~-~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~------~~-~iPiilm~ 146 (311)
+.++-+++++ .|++.|+|.||+|.|-+.| ++ ++.++++++ .. ++++..++
T Consensus 39 ~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~~---~~-------------------~~~v~~~~~~~~~~~~~~~~~i~~l~ 96 (337)
T 3ble_A 39 STSEKLNIAKFLLQKLNVDRVEIASARVSK---GE-------------------LETVQKIMEWAATEQLTERIEILGFV 96 (337)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEETTSCT---TH-------------------HHHHHHHHHHHHHTTCGGGEEEEEES
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCh---hH-------------------HHHHHHHHhhhhhhccCCCCeEEEEc
Confidence 4578899999 9999999999999998755 21 112222222 21 23444432
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCC------------h----hhHHHHHHHHHHcCCCeEEEeCC-----CChH
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVP------------L----EETESLQKEAMKNKIELVLFTTP-----TTPT 205 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp------------~----ee~~~~~~~~~~~gi~~I~lisp-----~t~~ 205 (311)
- +. ++++.+.++|+|.+-+.+-. . +...+..+.++++|+++.+.+.. .++.
T Consensus 97 ~-------~~-~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~ 168 (337)
T 3ble_A 97 D-------GN-KTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSP 168 (337)
T ss_dssp S-------TT-HHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCH
T ss_pred c-------ch-hhHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCH
Confidence 1 12 37889999999988775311 1 34556778889999876655432 1123
Q ss_pred HHHHHHHH----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 206 DRMKAIVE----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 206 eri~~i~~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+.+.++++ ..-..+++....|. ..|..+.++++.+++.+ ++|+-+ .+|... .+.-..+++|||.|
T Consensus 169 ~~~~~~~~~~~~~Ga~~i~l~DT~G~-----~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~-AN~laAv~aGa~~v 242 (337)
T 3ble_A 169 DYVKSLVEHLSKEHIERIFLPDTLGV-----LSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSV-ANSLQAIRAGVKGL 242 (337)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTCC-----CCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHH-HHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCC-----cCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHH-HHHHHHHHhCCCEE
Confidence 43333333 22334666654443 34777899999999987 788766 366654 45666778999977
Q ss_pred E
Q 021527 277 I 277 (311)
Q Consensus 277 I 277 (311)
=
T Consensus 243 d 243 (337)
T 3ble_A 243 H 243 (337)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.5e-05 Score=72.83 Aligned_cols=155 Identities=14% Similarity=0.138 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-------hh-hHHHHHHHHHHcCCC
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-------LE-ETESLQKEAMKNKIE 194 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-------~e-e~~~~~~~~~~~gi~ 194 (311)
+.+...+.++++++. .+|+++-.-. ....++.+.+.++|+|.+.+..-+ .+ ....+....+..++.
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~-----~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~p 213 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSP-----QNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVP 213 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECT-----TTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCC-----ccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCC
Confidence 445556677777764 6776653211 123567777788999998764211 00 112234444556776
Q ss_pred eEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCC--CCCchHHHHHHHHhhc-------CC---CcEEEeeCCCCH
Q 021527 195 LVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA--SISGHVQTLLREIKES-------ST---KPVAVGFGISKP 262 (311)
Q Consensus 195 ~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~--~~~~~~~~~l~~vk~~-------~~---~Pv~vGfGIst~ 262 (311)
++. -.-.++ +..+...+ .|..+++-..|.++.+. .......+.+.++++. ++ +||++.+||+++
T Consensus 214 vi~-ggi~t~-e~a~~~~~--~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~ 289 (393)
T 2qr6_A 214 VIA-GGVNDY-TTALHMMR--TGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENS 289 (393)
T ss_dssp EEE-ECCCSH-HHHHHHHT--TTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSH
T ss_pred EEE-CCcCCH-HHHHHHHH--cCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCH
Confidence 554 233344 33444434 34444322333333221 1112234556555544 33 999999999999
Q ss_pred HHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 263 EHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+|+.+++..|||+|.+|++|....+
T Consensus 290 ~dv~kalalGA~~V~iG~~~l~~~e 314 (393)
T 2qr6_A 290 GDVVKAIACGADAVVLGSPLARAEE 314 (393)
T ss_dssp HHHHHHHHHTCSEEEECGGGGGSTT
T ss_pred HHHHHHHHcCCCEEEECHHHHcCCC
Confidence 9999999999999999999877654
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00021 Score=63.25 Aligned_cols=188 Identities=15% Similarity=0.194 Sum_probs=109.5
Q ss_pred HHHHHHHHHHCCCCEEEEcC-CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 79 TAEALKLLDSCGSDIIELGV-PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~-PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
..+.++.+.++|+|++=+-+ |-| |- -++.++.-++.+.+.+. -.++.++. |+ ..+
T Consensus 11 ~~eda~~a~~~GaD~iGfif~~~S-pR----------------~V~~~~a~~i~~~~~~~-~~~VgVfv--n~----~~~ 66 (205)
T 1nsj_A 11 NLEDALFSVESGADAVGFVFYPKS-KR----------------YISPEDARRISVELPPF-VFRVGVFV--NE----EPE 66 (205)
T ss_dssp SHHHHHHHHHHTCSEEEEECCTTC-TT----------------BCCHHHHHHHHHHSCSS-SEEEEEES--SC----CHH
T ss_pred cHHHHHHHHHcCCCEEEEEecCCC-CC----------------cCCHHHHHHHHHhCCCC-CCEEEEEe--CC----CHH
Confidence 36788899999999987764 322 21 13333333344444332 23456643 42 245
Q ss_pred HHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecC---CccCCCCC
Q 021527 158 NFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSI---GVTGARAS 233 (311)
Q Consensus 158 ~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~---G~TG~~~~ 233 (311)
...+.+.+.+.|.+=++ |-+++.... +++ ++..+.-+...... .+..+....-.++.+-+.. |.||..
T Consensus 67 ~i~~~~~~~~ld~vQLHG~e~~~~~~~----l~~-~~~vika~~v~~~~-~l~~~~~~~~d~~LlD~~~~~~GGtG~~-- 138 (205)
T 1nsj_A 67 KILDVASYVQLNAVQLHGEEPIELCRK----IAE-RILVIKAVGVSNER-DMERALNYREFPILLDTKTPEYGGSGKT-- 138 (205)
T ss_dssp HHHHHHHHHTCSEEEECSCCCHHHHHH----HHT-TSEEEEEEEESSHH-HHHHHGGGTTSCEEEEESCSSSSSCCSC--
T ss_pred HHHHHHHhhCCCEEEECCCCCHHHHHH----Hhc-CCCEEEEEEcCCHH-HHHHHHHcCCCEEEECCCCCCCCCCCCc--
Confidence 55667788999999987 344443333 321 45555544444332 2333322222233333432 667753
Q ss_pred CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 234 ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
++.+. ++.++ ..+.|++..+|++ |||+.+..+ .+++||=|.|.+...-+ ....+++++|++.++.
T Consensus 139 fdw~~---l~~~~-~~~~p~~LAGGL~-peNV~~ai~~~~p~gVDvsSGvE~~pG-----~KD~~ki~~fi~~~r~ 204 (205)
T 1nsj_A 139 FDWSL---ILPYR-DRFRYLVLSGGLN-PENVRSAIDVVRPFAVDVSSGVEAFPG-----KKDHDSIKMFIKNAKG 204 (205)
T ss_dssp CCGGG---TGGGG-GGSSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGGEEETT-----EECHHHHHHHHHHHHT
T ss_pred cCHHH---HHhhh-cCCCcEEEECCCC-HHHHHHHHHhcCCCEEEECCceecCCC-----CcCHHHHHHHHHHHhh
Confidence 44432 33321 2368999999996 899977654 68999999999985211 1346789999998875
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00013 Score=67.73 Aligned_cols=173 Identities=16% Similarity=0.204 Sum_probs=106.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.++.+++++.|.+.|+|.||+|.+- .|-.. |... +..+.++.+++..++++..+. .|
T Consensus 25 ~~e~k~~i~~~L~~~Gv~~IE~g~~~-~~~~~-p~~~--------------d~~~~~~~~~~~~~~~~~~l~-~~----- 82 (298)
T 2cw6_A 25 STPVKIKLIDMLSEAGLSVIETTSFV-SPKWV-PQMG--------------DHTEVLKGIQKFPGINYPVLT-PN----- 82 (298)
T ss_dssp CHHHHHHHHHHHHHTTCSEECCEECC-CTTTC-GGGT--------------THHHHHHHSCCCTTCBCCEEC-CS-----
T ss_pred CHHHHHHHHHHHHHcCcCEEEECCCc-Ccccc-cccC--------------CHHHHHHHHhhCCCCEEEEEc-CC-----
Confidence 46788899999999999999999733 33211 1110 011244445443355555543 33
Q ss_pred CHHHHHHHHHHcCCcEEEecCCC------------h----hhHHHHHHHHHHcCCCeEEEeC-----C---CChHHHHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVP------------L----EETESLQKEAMKNKIELVLFTT-----P---TTPTDRMKA 210 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp------------~----ee~~~~~~~~~~~gi~~I~lis-----p---~t~~eri~~ 210 (311)
.+.++.+.++|++.+.+.+-. . +...+..+.++++|+++...++ | .++.+.+.+
T Consensus 83 --~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~ 160 (298)
T 2cw6_A 83 --LKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAE 160 (298)
T ss_dssp --HHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHH
T ss_pred --HHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHH
Confidence 456888999999988885322 1 2345567888999987643322 1 123444433
Q ss_pred HHH----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE----eeCCCCHHHHHHHHHcCCcEEE
Q 021527 211 IVE----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV----GFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 211 i~~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v----GfGIst~e~v~~v~~~GADGvI 277 (311)
+++ ..-..+++....|. ..|..+.++++.+++.. ++|+-+ .+|... .+....+++||+-|=
T Consensus 161 ~~~~~~~~Ga~~i~l~DT~G~-----~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~-An~laA~~aGa~~vd 230 (298)
T 2cw6_A 161 VTKKFYSMGCYEISLGDTIGV-----GTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQAL-ANTLMALQMGVSVVD 230 (298)
T ss_dssp HHHHHHHTTCSEEEEEETTSC-----CCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHH-HHHHHHHHTTCCEEE
T ss_pred HHHHHHHcCCCEEEecCCCCC-----cCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHH-HHHHHHHHhCCCEEE
Confidence 333 33345666654443 34677899999999987 467655 345543 456667789999774
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00016 Score=70.58 Aligned_cols=167 Identities=15% Similarity=0.196 Sum_probs=103.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.++-+++++.|++.|+|.||+|+|-+.| +-++.++.+.+. .+..+....-
T Consensus 59 s~eeKl~Ia~~L~~~Gv~~IEvG~P~asp----------------------~d~~~~~~i~~~~~~~~v~~~~r------ 110 (423)
T 3ivs_A 59 DTEKKIQIAKALDNFGVDYIELTSPVASE----------------------QSRQDCEAICKLGLKCKILTHIR------ 110 (423)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCTTSCH----------------------HHHHHHHHHHTSCCSSEEEEEEE------
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecccCH----------------------HHHHHHHHHHhcCCCCEEEEeec------
Confidence 35788999999999999999999876544 112344455433 2333322211
Q ss_pred cCHHHHHHHHHHcCCcEEEec----CC--------Ch----hhHHHHHHHHHHcCCCeEEEeCC--CChHHHHHHHH---
Q 021527 154 RGVDNFMSTVRDIGIRGLVVP----DV--------PL----EETESLQKEAMKNKIELVLFTTP--TTPTDRMKAIV--- 212 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviip----Dl--------p~----ee~~~~~~~~~~~gi~~I~lisp--~t~~eri~~i~--- 212 (311)
...+-++.+.++|++.|.+. |. .. +...+..+.++++|+++.+.+.. .++.+.+.+++
T Consensus 111 -~~~~di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~ 189 (423)
T 3ivs_A 111 -CHMDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAV 189 (423)
T ss_dssp -SCHHHHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHH
T ss_pred -cChhhHHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHH
Confidence 22455788999999988773 21 12 33456778889999986654321 12334433333
Q ss_pred -HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 213 -EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 213 -~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+.....+++....|. ..|..+.++++.+++..++|+-+ .+|... .+....+++|||.|
T Consensus 190 ~~~Ga~~i~l~DTvG~-----~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAv-AN~laAv~aGa~~v 252 (423)
T 3ivs_A 190 DKIGVNRVGIADTVGC-----ATPRQVYDLIRTLRGVVSCDIECHFHNDTGMAI-ANAYCALEAGATHI 252 (423)
T ss_dssp HHHCCSEEEEEETTSC-----CCHHHHHHHHHHHHHHCSSEEEEEEBCTTSCHH-HHHHHHHHTTCCEE
T ss_pred HHhCCCccccCCccCc-----CCHHHHHHHHHHHHhhcCCeEEEEECCCCchHH-HHHHHHHHhCCCEE
Confidence 333345666665543 34667889999999887777655 345543 45666677999966
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00012 Score=68.15 Aligned_cols=171 Identities=15% Similarity=0.201 Sum_probs=104.5
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.++-+++++.|.++|+|.||+|+|.+.| ++ ++.++.+++. .++++..++-.+ .
T Consensus 25 ~~~~K~~i~~~L~~~Gv~~IE~g~p~~~~---~d-------------------~e~v~~i~~~~~~~~i~~l~~~~---~ 79 (293)
T 3ewb_X 25 DVKEKIQIALQLEKLGIDVIEAGFPISSP---GD-------------------FECVKAIAKAIKHCSVTGLARCV---E 79 (293)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECGGGCH---HH-------------------HHHHHHHHHHCCSSEEEEEEESS---H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCc---cH-------------------HHHHHHHHHhcCCCEEEEEecCC---H
Confidence 35788999999999999999999888654 10 1234444432 345565554322 2
Q ss_pred cCHHHHHHHHHHcCCcEEEecC------------CChhh----HHHHHHHHHHcCCCeEEEeC--CCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPD------------VPLEE----TESLQKEAMKNKIELVLFTT--PTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipD------------lp~ee----~~~~~~~~~~~gi~~I~lis--p~t~~eri~~i~~~- 214 (311)
.++++.++.++.+|++.+.+.+ ...+| ..+..+.++++|+.+.+.+. +.++.+.+.++++.
T Consensus 80 ~di~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~ 159 (293)
T 3ewb_X 80 GDIDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTA 159 (293)
T ss_dssp HHHHHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHH
Confidence 2445555555668998877642 12222 45667778999987554332 22445554444443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST----KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.-..+++.. ++|. ..|..+.++++.+++.++ +|+-+ .+|... .+....+++||+.|
T Consensus 160 ~~~G~~~i~l~D---T~G~--~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~-AN~laA~~aGa~~v 226 (293)
T 3ewb_X 160 IDAGATVINIPD---TVGY--TNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMAT-ANALAAIENGARRV 226 (293)
T ss_dssp HHTTCCEEEEEC---SSSC--CCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHH-HHHHHHHHTTCCEE
T ss_pred HHcCCCEEEecC---CCCC--CCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHH-HHHHHHHHhCCCEE
Confidence 233455554 4443 356778899999998763 45544 345543 45667778999965
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00051 Score=63.29 Aligned_cols=176 Identities=15% Similarity=0.173 Sum_probs=108.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+...+.++.+.+.|||+|-+|...+.. | ..+.+...++.+++.+++|+.+.+|-
T Consensus 32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~~~--e----------------E~~rv~~vi~~l~~~~~~pisIDT~~------ 87 (271)
T 2yci_X 32 DPRPIQEWARRQAEKGAHYLDVNTGPTAD--D----------------PVRVMEWLVKTIQEVVDLPCCLDSTN------ 87 (271)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCSCSS--C----------------HHHHHHHHHHHHHHHCCCCEEEECSC------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcCch--h----------------HHHHHHHHHHHHHHhCCCeEEEeCCC------
Confidence 45788999999999999999999766322 2 12345668888888889999999872
Q ss_pred CHHHHHHHHHHc--CCcEEEecCCChhh--HHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHHHH-----hCCce--
Q 021527 155 GVDNFMSTVRDI--GIRGLVVPDVPLEE--TESLQKEAMKNKIELVLFTT-----PTTPTDRMKAIVE-----ASEGF-- 218 (311)
Q Consensus 155 g~~~fi~~~~~a--GadGviipDlp~ee--~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i~~-----~a~gf-- 218 (311)
.+-++.+.++ |++-+ .|+.-++ ..++.+.++++|...|.+-. |.+.++++....+ ...|+
T Consensus 88 --~~v~~aal~a~~Ga~iI--Ndvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~ 163 (271)
T 2yci_X 88 --PDAIEAGLKVHRGHAMI--NSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPM 163 (271)
T ss_dssp --HHHHHHHHHHCCSCCEE--EEECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCG
T ss_pred --HHHHHHHHHhCCCCCEE--EECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCc
Confidence 3456667777 88754 4433332 35678888999997776643 4554444322211 12343
Q ss_pred --EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEe-----eCCCCHHHH-----HHHHHcCCcEEEE
Q 021527 219 --VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVG-----FGISKPEHV-----QQVAGWGADGVIV 278 (311)
Q Consensus 219 --iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vG-----fGIst~e~v-----~~v~~~GADGvIV 278 (311)
+++-...|.-|.....+..+.+.++++++.. +.|+++| ||....+-+ ..+...|+|.+||
T Consensus 164 ~~IilDPg~gfigk~~~~~~~~l~~l~~~~~~~~p~~p~l~G~Snksfg~~~r~~l~~t~~~~a~~~g~~~~iv 237 (271)
T 2yci_X 164 TELYIDPLILPVNVAQEHAVEVLETIRQIKLMANPAPRTVLGLSNVSQKCPDRPLINRTYLVMAMTAGLDAAIM 237 (271)
T ss_dssp GGEEEECCCCCTTTSTHHHHHHHHHHHHHTTSSSSCCEEEEEGGGGGTTCSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccEEEecCCCccccCHHHHHHHHHHHHHHHHhCCCCCCEEEeeCccccCCchHHHHHHHHHHHHHHHhCCcEEE
Confidence 6766655532432221223344455555543 4899996 454322222 2334678888876
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=6.5e-05 Score=75.15 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~ 156 (311)
...+-+++|.++|+|+|-++ .+.| -+ +..++.++.||+.. ++||+.. |.. .
T Consensus 281 d~~eR~~aLv~AGvD~iviD------~ahG--------------hs-~~v~~~i~~ik~~~p~~~viaG---NVa----T 332 (556)
T 4af0_A 281 GDKDRLKLLAEAGLDVVVLD------SSQG--------------NS-VYQIEFIKWIKQTYPKIDVIAG---NVV----T 332 (556)
T ss_dssp HHHHHHHHHHHTTCCEEEEC------CSCC--------------CS-HHHHHHHHHHHHHCTTSEEEEE---EEC----S
T ss_pred cHHHHHHHHHhcCCcEEEEe------cccc--------------cc-HHHHHHHHHHHhhCCcceEEec---ccc----C
Confidence 57889999999999999997 3334 22 34578899998764 7888775 322 1
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+-.+.+.++|+|+|.+.=-| .- ..+| |+ +||..-..-.
T Consensus 333 ~e~a~~Li~aGAD~vkVGiGp----------------GS----iCtT---r~------------------v~GvG~PQ~t 371 (556)
T 4af0_A 333 REQAAQLIAAGADGLRIGMGS----------------GS----ICIT---QE------------------VMAVGRPQGT 371 (556)
T ss_dssp HHHHHHHHHHTCSEEEECSSC----------------ST----TBCC---TT------------------TCCSCCCHHH
T ss_pred HHHHHHHHHcCCCEEeecCCC----------------Cc----cccc---cc------------------ccCCCCcHHH
Confidence 344566788999998664111 10 1122 11 2222111111
Q ss_pred hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 237 HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 237 ~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.+.+ +.+..+..++||+..+||++.-|+.+.+.+|||.|-+||.|...-+
T Consensus 372 Ai~~-~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt~E 421 (556)
T 4af0_A 372 AVYA-VAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTE 421 (556)
T ss_dssp HHHH-HHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred HHHH-HHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEchhhccccC
Confidence 1222 4445555689999999999999999999999999999999987664
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00018 Score=69.77 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-Cc
Q 021527 77 STTAEALKLLDSCGSDIIELGV-----------PYSDPLAD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CP 141 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iP 141 (311)
+.+.+.++.+.++|.|+|||-. |.++---| |. +.+- .+-.+++++.||+.+. .|
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGs-lenR----------~rf~~Eiv~aVr~avg~~~ 239 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGS-LANR----------CKFITQVVQAVVSAIGADR 239 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSS-HHHH----------HHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcC-hhhh----------hHHHHHHHHHHHHHhCCCc
Confidence 5788999999999999999954 66443333 22 2221 2335678888887653 38
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcC------CCeEEEeCCCChHHHHHHHHHhC
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK------IELVLFTTPTTPTDRMKAIVEAS 215 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~g------i~~I~lisp~t~~eri~~i~~~a 215 (311)
|.+-.-.+..+. |.+ ...+.++..++.+.+.+.| ++.+-+..++... . ...
T Consensus 240 V~vRls~~~~~~-------------g~~----~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~-----~-~~~ 296 (402)
T 2hsa_B 240 VGVRVSPAIDHL-------------DAM----DSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVA-----Y-GQT 296 (402)
T ss_dssp EEEEECSSCCST-------------TCC----CSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCT-----T-TTS
T ss_pred EEEEeccccccC-------------CCC----CCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCcccc-----c-cCC
Confidence 777421110000 111 1123456666777777777 7766665443210 0 000
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.. +..+ . +....++++++|+.+++||++.+|| +++++.++++.| ||+|-+|.+++.
T Consensus 297 ~~-----~~~~-~------~~~~~~~~~~vk~~~~iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~ 353 (402)
T 2hsa_B 297 EA-----GRLG-S------EEEEARLMRTLRNAYQGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFIS 353 (402)
T ss_dssp SS-----TTTT-H------HHHHHHHHHHHHHHCSSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred cc-----cccc-C------CcchHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHh
Confidence 00 0000 0 0012467889999999999999999 899999999988 999999998875
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.1e-05 Score=70.76 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=43.0
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.++++++++.+++||++++||++++++.++++.|||+|++|+++.+
T Consensus 68 ~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~ 113 (247)
T 3tdn_A 68 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVE 113 (247)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHH
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhh
Confidence 4689999999999999999999999999999999999999999774
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.7e-05 Score=75.39 Aligned_cols=180 Identities=17% Similarity=0.126 Sum_probs=93.1
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHH---CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDS---CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~---~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
..++.=+ +--+.+...+..+.+.+ .++|+|||.+ |-|-..| .+. .+...+.+.++++.+++..+
T Consensus 127 ~pvivsi--~g~~~~~~~~~~~~~~~~~~~~ad~ielNi--ScPn~~g-------~~~--l~~~~~~~~~i~~~v~~~~~ 193 (354)
T 3tjx_A 127 KPLFLSM--SGLSMRENVEMCKRLAAVATEKGVILELNL--SCPNVPG-------KPQ--VAYDFDAMRQCLTAVSEVYP 193 (354)
T ss_dssp CCEEEEE--CCSSHHHHHHHHHHHHHHHHHHCCEEEEEC--C------------------CTTSHHHHHHHHHHHHHHCC
T ss_pred ceEEEEE--ecCChHHHHHHHHHHHHhhhcCCCEEEeee--CCCCCcc-------hhh--hccCHHHHHHHHHHHHHHhh
Confidence 3444433 33344666666665554 4899999985 4453332 111 23455666778888888888
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCC-cEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGI-RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGa-dGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
.|+.+-.--+. .....+...+.+.+.+. +++...+- +..-..+...+. +. ......++
T Consensus 194 ~pv~vK~~p~~-~~~~~~~~~~~~~~~~~~~~i~~i~t----------------~~~~~~id~~~~--~~--~~~~~~~~ 252 (354)
T 3tjx_A 194 HSFGVKMPPYF-DFAAFDAAAEILNEFPKVQFITCINS----------------IGNGLVIDAETE--SV--VIKPKQGF 252 (354)
T ss_dssp SCEEEEECCCC-SHHHHHHHHHHHHTCTTEEEEEECCC----------------EEEEECEETTTT--EE--SCSGGGGE
T ss_pred cccccccCCCC-CchhHHHHHHHHHhhcccchhheecc----------------cccccccccccc--cc--cccCcccc
Confidence 99877542210 00011223333334333 33222211 000000111110 00 00000010
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
-|.+|. .+.+-..+.+.++++.+ ++||+.-+||.|.+|+.+.+.+|||.|-|||+++.
T Consensus 253 ------GGlSG~--~~~~~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y 311 (354)
T 3tjx_A 253 ------GGLGGR--YVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE 311 (354)
T ss_dssp ------EEEEGG--GGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHH
T ss_pred ------cccCch--hhHHHHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhh
Confidence 022332 22233456777877664 78999999999999999999999999999999864
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0002 Score=68.78 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=103.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.++-+++++.|++.|+|.||+|+|.+.| + =++.++++++. .+..+..++-.|
T Consensus 32 ~~~~Kl~ia~~L~~~Gv~~IE~g~p~~~~---~-------------------d~e~v~~i~~~~~~~~i~~l~r~~---- 85 (370)
T 3rmj_A 32 TKEEKIRVARQLEKLGVDIIEAGFAAASP---G-------------------DFEAVNAIAKTITKSTVCSLSRAI---- 85 (370)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEEGGGCH---H-------------------HHHHHHHHHTTCSSSEEEEEEESS----
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCH---H-------------------HHHHHHHHHHhCCCCeEEEEecCC----
Confidence 34788999999999999999999988654 1 02355555544 344555554333
Q ss_pred cCHHHHHHHHHH----cCCcEEEecC------------CChhh----HHHHHHHHHHcCCCeEEEe--CCCChHHHHHHH
Q 021527 154 RGVDNFMSTVRD----IGIRGLVVPD------------VPLEE----TESLQKEAMKNKIELVLFT--TPTTPTDRMKAI 211 (311)
Q Consensus 154 ~g~~~fi~~~~~----aGadGviipD------------lp~ee----~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i 211 (311)
.+.++.+.+ +|++.+.+.+ ...+| ..+..+.++++|.+..+.. ...++.+.+.++
T Consensus 86 ---~~di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~ 162 (370)
T 3rmj_A 86 ---ERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEI 162 (370)
T ss_dssp ---HHHHHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHH
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHH
Confidence 344554444 8999877642 12233 3446777889998865543 123334544444
Q ss_pred HH----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 212 VE----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST----KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 212 ~~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++ ..-..+++....|+ ..|..+.++++.+++.++ +|+-+ .+|... .+.-..+++||+.|
T Consensus 163 ~~~~~~~Ga~~i~l~DT~G~-----~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAv-AN~laAv~aGa~~v 233 (370)
T 3rmj_A 163 CGAVIEAGATTINIPDTVGY-----SIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAV-ANSLAALKGGARQV 233 (370)
T ss_dssp HHHHHHHTCCEEEEECSSSC-----CCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHH-HHHHHHHHTTCCEE
T ss_pred HHHHHHcCCCEEEecCccCC-----cCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHH-HHHHHHHHhCCCEE
Confidence 33 33345666654443 346778899999998764 56655 345543 45566677999977
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00015 Score=71.65 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=114.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEec-Ccchh
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTY-YNPIL 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y-~n~i~ 152 (311)
..++.+++++.|++.|++.||+|.|-+ .. +..+.+ +-+- .+.++++++. .+.++..++- .|..-
T Consensus 28 ~~~dkl~Ia~~L~~~Gv~~IE~g~~at--------F~-~~~r~~--~~d~---~e~l~~i~~~~~~~~l~~l~R~~N~~G 93 (464)
T 2nx9_A 28 RIDDMLPIAQQLDQIGYWSLECWGGAT--------FD-SCIRFL--GEDP---WQRLRLLKQAMPNTPLQMLLRGQNLLG 93 (464)
T ss_dssp CGGGTGGGHHHHHTSCCSEEEEEETTH--------HH-HHHHTT--CCCH---HHHHHHHHHHCSSSCEEEEECGGGTTS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcCcc--------cc-chhhcc--CCCH---HHHHHHHHHhCCCCeEEEEeccccccC
Confidence 456778999999999999999996631 00 011111 1111 3445555543 4566666642 12110
Q ss_pred --ccC---HHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHH----HHHhCCc
Q 021527 153 --KRG---VDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFT----TPTTPTDRMKA----IVEASEG 217 (311)
Q Consensus 153 --~~g---~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~----i~~~a~g 217 (311)
.|. .+.|++.+.++|+|.+-+-|-. .+...+..+.++++|..+...+ ++..+.+...+ +.+..-.
T Consensus 94 ~~~~~ddv~~~~v~~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad 173 (464)
T 2nx9_A 94 YRHYADDVVDTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVD 173 (464)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCS
T ss_pred cccccchhhHHHHHHHHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCC
Confidence 011 3679999999999998886532 3557778888999998764333 23333444333 3333344
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEEE
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGvI 277 (311)
.|++....|. ..|..+.++++.+|+.+++|+-+ .+|... .+....+++|||.|=
T Consensus 174 ~I~l~DT~G~-----~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAv-AN~laAv~AGa~~VD 231 (464)
T 2nx9_A 174 SIALKDMAGI-----LTPYAAEELVSTLKKQVDVELHLHCHSTAGLAD-MTLLKAIEAGVDRVD 231 (464)
T ss_dssp EEEEEETTSC-----CCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHH-HHHHHHHHTTCSEEE
T ss_pred EEEEcCCCCC-----cCHHHHHHHHHHHHHhcCCeEEEEECCCCChHH-HHHHHHHHhCCCEEE
Confidence 5677665553 34777899999999988888866 356653 456677789999663
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0001 Score=72.00 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHCCCCEEEEc--C---------CCCCCCCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-----
Q 021527 78 TTAEALKLLDSCGSDIIELG--V---------PYSDPLAD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQM----- 138 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG--~---------PfsDP~aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~----- 138 (311)
.+.+.++...++|.|+|||- . |.++---| |..+++-+ +-.+++++++|+.+
T Consensus 171 ~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~----------Rf~~evv~aVr~~v~~~~~ 240 (419)
T 3l5a_A 171 QYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRA----------RLCLEVMRAVQEVIDKEAP 240 (419)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHH----------HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhh----------HHHHHHHHHHHHHHhhhcC
Confidence 57888889999999999993 2 54443333 22212211 23467777777654
Q ss_pred -CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHH-cCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 139 -SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK-NKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 139 -~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~-~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
+.||.+-........ |..| +..++..++.+.+.+ .|++.|-+...+.. .
T Consensus 241 ~~f~v~vRis~~~~~~-------------~~~G-----~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~--~--------- 291 (419)
T 3l5a_A 241 DNFILGFRATPEETRG-------------SDLG-----YTIDEFNQLIDWVMDVSNIQYLAIASWGRH--I--------- 291 (419)
T ss_dssp TTCEEEEEECSCEEET-------------TEEE-----ECHHHHHHHHHHHHHHSCCCCEEECCTTCC--G---------
T ss_pred CCeeEEEecccccccC-------------CCCC-----CCHHHHHHHHHHHHhhcCCcEEEEeeCCcc--c---------
Confidence 567777432111100 0002 234667777777777 88887766544320 0
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.|-.. ..|. ... .++++.+|+.+ ++||++.+||.+++++.++++. ||.|.+|.+++.
T Consensus 292 -~~~~~~---~~g~--~~~---~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~Ia 351 (419)
T 3l5a_A 292 -YQNTSR---TPGD--HFG---RPVNQIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMSSPFVT 351 (419)
T ss_dssp -GGCBCC---CSST--TTT---SBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHH
T ss_pred -cccccC---CCCc--ccc---HHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHH
Confidence 000000 1111 111 13567777765 5899999999999999999999 999999999864
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00021 Score=67.22 Aligned_cols=105 Identities=17% Similarity=0.291 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCC----hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLAD----GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP 150 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aD----Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~ 150 (311)
+.+..++.++.+.+.|||+|-+|...+-|-++ ....+.- ++.+...|+.+++..++||-+.+|-
T Consensus 47 ~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE----------~~Rv~pvI~~l~~~~~vpISIDT~~-- 114 (314)
T 3tr9_A 47 DLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIE----------LDRLLPVIDAIKKRFPQLISVDTSR-- 114 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHH----------HHHHHHHHHHHHHHCCSEEEEECSC--
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHH----------HHHHHHHHHHHHhhCCCeEEEeCCC--
Confidence 45788999999999999999999988888655 2111211 1234567888888789999999873
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 199 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li 199 (311)
.+-++.+.++|++ ||.|+.-++..++.+.++++|...|.+-
T Consensus 115 ------~~Va~aAl~aGa~--iINDVsg~~~~~m~~v~a~~g~~vVlMh 155 (314)
T 3tr9_A 115 ------PRVMREAVNTGAD--MINDQRALQLDDALTTVSALKTPVCLMH 155 (314)
T ss_dssp ------HHHHHHHHHHTCC--EEEETTTTCSTTHHHHHHHHTCCEEEEC
T ss_pred ------HHHHHHHHHcCCC--EEEECCCCCchHHHHHHHHhCCeEEEEC
Confidence 3466778888988 5666654444467778889998877654
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00037 Score=70.02 Aligned_cols=183 Identities=13% Similarity=0.112 Sum_probs=114.1
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEec-Ccch
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTY-YNPI 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y-~n~i 151 (311)
-+.++-+++++.|++.|++.||+|.|-+ .. +..+.+ +-+- ++.++++++. .++++..++- -|..
T Consensus 44 ~~tedKl~Ia~~L~~~Gv~~IE~G~pat--------F~-~~~rfl--~~d~---~e~lr~l~~~~~~~~l~~L~R~~N~~ 109 (539)
T 1rqb_A 44 MAMEDMVGACADIDAAGYWSVECWGGAT--------YD-SCIRFL--NEDP---WERLRTFRKLMPNSRLQMLLRGQNLL 109 (539)
T ss_dssp CCGGGTGGGHHHHHHTTCSEEEEEETTH--------HH-HHHHTS--CCCH---HHHHHHHHHHCTTSCEEEEECGGGTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCcccc--------cc-cchhcc--CCCH---HHHHHHHHHhCCCCEEEEEecccccc
Confidence 3457778999999999999999997631 00 011111 1122 3445555543 4566766642 1211
Q ss_pred --hccC---HHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHH----HHhCC
Q 021527 152 --LKRG---VDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFT----TPTTPTDRMKAI----VEASE 216 (311)
Q Consensus 152 --~~~g---~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i----~~~a~ 216 (311)
-.|. .++|++.+.++|+|.+-+-|-. .+...+..+.++++|...-..+ ++.++.+...++ .+..-
T Consensus 110 G~~~ypddv~~~~ve~a~~aGvd~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Ga 189 (539)
T 1rqb_A 110 GYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGA 189 (539)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcCC
Confidence 0111 4789999999999999886532 3567778888999998753233 223334443333 33333
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
..|++....|. ..|..+.++++.+|+.+ ++||-+ .+|... .+....+++|||.|
T Consensus 190 d~I~L~DT~G~-----~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAv-AN~laAveAGa~~V 249 (539)
T 1rqb_A 190 DSIALKDMAAL-----LKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTE-VSLMKAIEAGVDVV 249 (539)
T ss_dssp SEEEEEETTCC-----CCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHH-HHHHHHHHTTCSEE
T ss_pred CEEEeCCCCCC-----cCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHH-HHHHHHHHhCCCEE
Confidence 45677665553 34677899999999987 678766 356653 45667778999866
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00035 Score=61.72 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=109.6
Q ss_pred HHHHHHHHHHCCCCEEEEcC-CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 79 TAEALKLLDSCGSDIIELGV-PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~-PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
..+.++.+.++|+|++=+-+ |-| |- -++.++.-++.+.+.+. -.++.++. |+ ..+
T Consensus 10 ~~eda~~a~~~GaD~iGfif~~~S-pR----------------~V~~~~a~~i~~~~~~~-~~~VgVfv--n~----~~~ 65 (203)
T 1v5x_A 10 RLEDALLAEALGAFALGFVLAPGS-RR----------------RIAPEAARAIGEALGPF-VVRVGVFR--DQ----PPE 65 (203)
T ss_dssp CHHHHHHHHHHTCSEEEEECCTTC-TT----------------BCCHHHHHHHHHHSCSS-SEEEEEES--SC----CHH
T ss_pred cHHHHHHHHHcCCCEEEEEecCCC-CC----------------cCCHHHHHHHHHhCCCC-CCEEEEEe--CC----CHH
Confidence 36788899999999987764 322 21 13333333444444432 23456643 42 245
Q ss_pred HHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 158 NFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 158 ~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
...+.+.+.+.|.+=++ |-+++.... ++. ++..+.-+......+ + ......-.++.+-+..|.||.. ++.
T Consensus 66 ~i~~~~~~~~ld~vQLHG~e~~~~~~~----l~~-~~~vika~~v~~~~~-l-~~~~~~~d~~LlD~~~gGtG~~--fdW 136 (203)
T 1v5x_A 66 EVLRLMEEARLQVAQLHGEEPPEWAEA----VGR-FYPVIKAFPLEGPAR-P-EWADYPAQALLLDGKRPGSGEA--YPR 136 (203)
T ss_dssp HHHHHHHHTTCSEEEECSCCCHHHHHH----HTT-TSCEEEEEECSSSCC-G-GGGGSSCSEEEEECSSTTSCCC--CCG
T ss_pred HHHHHHHhhCCCEEEECCCCCHHHHHH----hcc-CCCEEEEEEcCChHh-h-hhhhcCCCEEEEcCCCCCCCCc--cCH
Confidence 56667788999999987 344443333 322 566665544333211 1 1212211233333444667753 444
Q ss_pred hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 237 HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 237 ~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+. ++.+. ..+.|++..+|++ |||+.+....+++||=|.|.+...-+ ....+++++|++.++.
T Consensus 137 ~~---l~~~~-~~~~p~~LAGGL~-peNV~~ai~~~p~gVDvsSGvE~~pG-----~KD~~ki~~fi~~~r~ 198 (203)
T 1v5x_A 137 AW---AKPLL-ATGRRVILAGGIA-PENLEEVLALRPYALDLASGVEEAPG-----VKSAEKLRALFARLAS 198 (203)
T ss_dssp GG---GHHHH-HTTSCEEECSSCC-STTHHHHHHHCCSEEEESGGGEEETT-----EECHHHHHHHHHHHHH
T ss_pred HH---HHhhh-ccCCcEEEECCCC-HHHHHHHHhcCCCEEEeCCceecCCC-----CcCHHHHHHHHHHHHH
Confidence 33 33311 1357999999996 89997766768999999999985221 1246788999988875
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00028 Score=67.99 Aligned_cols=149 Identities=17% Similarity=0.128 Sum_probs=94.2
Q ss_pred hHHHHHHHHH-HCCCCEEEEcC-----------CCCCCC-CC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-C
Q 021527 78 TTAEALKLLD-SCGSDIIELGV-----------PYSDPL-AD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-C 140 (311)
Q Consensus 78 ~~~e~~~~L~-~~GaD~IElG~-----------PfsDP~-aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-i 140 (311)
.+.+.++.+. ++|.|.|||-. |.++-- -| |..+++- .+-.+++++.+|+.+. -
T Consensus 175 ~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR----------~r~~~eiv~aVr~avg~~ 244 (379)
T 3aty_A 175 LFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTR----------CQLIYDVTKSVCDAVGSD 244 (379)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHH----------HHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhh----------HHHHHHHHHHHHHhcCCC
Confidence 4567777888 99999999932 553322 33 3122221 2334677888887643 3
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
||.+-.-.+..+. +.+ ...+.++..++.+.+.+.|++.+-+...+.. ..
T Consensus 245 ~v~vRis~~~~~~-------------~~~----~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~----------~~---- 293 (379)
T 3aty_A 245 RVGLRISPLNGVH-------------GMI----DSNPEALTKHLCKKIEPLSLAYLHYLRGDMV----------NQ---- 293 (379)
T ss_dssp GEEEEECTTCCGG-------------GCC----CSCHHHHHHHHHHHHGGGCCSEEEEECSCTT----------SC----
T ss_pred eEEEEECcccccc-------------cCC----CCCCHHHHHHHHHHHHHhCCCEEEEcCCCcC----------CC----
Confidence 7666321110000 000 0224456667777777888887766543311 00
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..+. + ++++|+.+++||++++|| +++++.++++.| ||.|-+|.+++.
T Consensus 294 ------------~~~~---~-~~~ir~~~~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~ 341 (379)
T 3aty_A 294 ------------QIGD---V-VAWVRGSYSGVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIA 341 (379)
T ss_dssp ------------CCCC---H-HHHHHTTCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ------------CccH---H-HHHHHHHCCCcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHh
Confidence 1122 5 888999999999999999 899999999998 999999999886
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=7.1e-05 Score=72.01 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-Cc
Q 021527 77 STTAEALKLLDSCGSDIIELGV-----------PYSDPLAD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CP 141 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iP 141 (311)
+.+.+.++.+.++|.|+|||-. |.++---| |. +.+- .+-.+++++.+|+.+. -|
T Consensus 167 ~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGs-lenR----------~r~~~eiv~aVr~avg~~~ 235 (376)
T 1icp_A 167 NEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGS-LENR----------CRFALEIVEAVANEIGSDR 235 (376)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHH----------HHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCcc-HHHh----------HHHHHHHHHHHHHHhcCCc
Confidence 4788899999999999999942 55433333 32 2211 2335778888887753 28
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.+..+. |.+ .+.+.++..++.+.+.+.|++.+-+..++....
T Consensus 236 V~vrls~~~~~~-------------g~~----~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~--------------- 283 (376)
T 1icp_A 236 VGIRISPFAHYN-------------EAG----DTNPTALGLYMVESLNKYDLAYCHVVEPRMKTA--------------- 283 (376)
T ss_dssp EEEEECTTCCTT-------------TCC----CSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC----------------
T ss_pred eEEEeccccccC-------------CCC----CCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCC---------------
Confidence 877532110000 111 123345566677777777877776654432100
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
+ .+. . .. ++++++|+.+++||++++|| +++++.++++.| ||+|-+|.+++.
T Consensus 284 ----~-~~~--~-~~---~~~~~vr~~~~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~ 335 (376)
T 1icp_A 284 ----W-EKI--E-CT---ESLVPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFIS 335 (376)
T ss_dssp -------------CC---CCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ----C-Ccc--c-cH---HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHHh
Confidence 0 000 0 01 24677788889999999999 799999999988 999999999875
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0028 Score=59.15 Aligned_cols=201 Identities=15% Similarity=0.226 Sum_probs=122.2
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNA 126 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~ 126 (311)
.+.|.++++++++. ..+++=|+ -.++.++++|+|.|=+| |--+..+ .+. ..+++++
T Consensus 11 ~~~lr~l~~~~~~i--~~~~a~D~------~sA~l~e~aGf~ai~vs---------~~s~a~~---~~G~pD~~~vt~~e 70 (298)
T 3eoo_A 11 GAKFRAAVAAEQPL--QVVGAITA------YAAKMAEAVGFKAVYLS---------GGGVAAN---SLGIPDLGISTMDD 70 (298)
T ss_dssp HHHHHHHHHHSSSE--EEEECSSH------HHHHHHHHHTCSCEEEC---------HHHHHHH---TTCCCSSSCCCHHH
T ss_pred HHHHHHHHhCCCcE--EEecCCCH------HHHHHHHHcCCCEEEEC---------cHHHHHH---hcCCCCCCCCCHHH
Confidence 35677777776653 34455555 34555688899999997 3111111 111 1258899
Q ss_pred HHHHHHHhhccCCCcEEEEe---cCcchhccCHHHHHHHHHHcCCcEEEecCC---------------ChhhH-HHHHHH
Q 021527 127 ILSMLKEVVPQMSCPIALFT---YYNPILKRGVDNFMSTVRDIGIRGLVVPDV---------------PLEET-ESLQKE 187 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~---Y~n~i~~~g~~~fi~~~~~aGadGviipDl---------------p~ee~-~~~~~~ 187 (311)
.+..++.|.+.+++||++.. |-|+. ...+-++.+.++|++||.+=|- |.+|. .+++..
T Consensus 71 m~~~~~~I~r~~~~PviaD~d~Gyg~~~---~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa 147 (298)
T 3eoo_A 71 VLVDANRITNATNLPLLVDIDTGWGGAF---NIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAA 147 (298)
T ss_dssp HHHHHHHHHHHCCSCEEEECTTCSSSHH---HHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCeEEEECCCCCCCHH---HHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHH
Confidence 99999999888899998863 43322 1234567788899999999652 34443 334333
Q ss_pred HHHc-CCCeEEEeCCCC--------hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEe--
Q 021527 188 AMKN-KIELVLFTTPTT--------PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVG-- 256 (311)
Q Consensus 188 ~~~~-gi~~I~lisp~t--------~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG-- 256 (311)
.... +.+.++..=-.. ..+|.+.+.+..-..+|+.+ .+ + .+.++++.+.+++|+.+.
T Consensus 148 ~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~---~~--------~-~ee~~~~~~~~~~Pl~~n~~ 215 (298)
T 3eoo_A 148 VDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPEA---MK--------T-LDDYRRFKEAVKVPILANLT 215 (298)
T ss_dssp HHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECC---CC--------S-HHHHHHHHHHHCSCBEEECC
T ss_pred HHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCC---CC--------C-HHHHHHHHHHcCCCeEEEec
Confidence 3222 444444331111 12666777665556677643 11 1 245666666667898663
Q ss_pred -eCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 257 -FGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 257 -fGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+|-+-.-+++++.++|..-|+.|..+.+..
T Consensus 216 ~~g~tp~~~~~eL~~lGv~~v~~~~~~~raa 246 (298)
T 3eoo_A 216 EFGSTPLFTLDELKGANVDIALYCCGAYRAM 246 (298)
T ss_dssp TTSSSCCCCHHHHHHTTCCEEEECSHHHHHH
T ss_pred cCCCCCCCCHHHHHHcCCeEEEEchHHHHHH
Confidence 443211246788889999999999888754
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00073 Score=70.10 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=109.1
Q ss_pred CChhhHHHHHHHHHHCCCCE--EEEc--------CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcE
Q 021527 74 PDLSTTAEALKLLDSCGSDI--IELG--------VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPI 142 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~--IElG--------~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPi 142 (311)
-+.++.+++++.|++.|+++ ||+| +||... .| ++.++++++. .++++
T Consensus 122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e---~p-------------------~e~l~~l~~~~~~~~l 179 (718)
T 3bg3_A 122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYE---CP-------------------WRRLQELRELIPNIPF 179 (718)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCC---CH-------------------HHHHHHHHHHCSSSCE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCC---CH-------------------HHHHHHHHHHcccchH
Confidence 45688999999999997666 9998 555311 11 2344444433 34566
Q ss_pred EEEecC-cch-----hccCHHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEeC-------CC---Ch
Q 021527 143 ALFTYY-NPI-----LKRGVDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFTT-------PT---TP 204 (311)
Q Consensus 143 ilm~Y~-n~i-----~~~g~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~lis-------p~---t~ 204 (311)
..+.-. |.+ -....++|++.+.++|+|.+-+.|-. ++......+.+++.|......++ |. .+
T Consensus 180 ~~l~R~~n~vgy~~~p~~~~~~~i~~a~~~Gvd~irIf~s~n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~ 259 (718)
T 3bg3_A 180 QMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYS 259 (718)
T ss_dssp EEEECGGGTTSSSCCCHHHHHHHHHHHHHHTCCEEEEECSSCCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTC
T ss_pred HHHhcccccccccccCCcchHHHHHHHHhcCcCEEEEEecHHHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCC
Confidence 544321 111 11114789999999999998887643 23455667788889976443332 21 13
Q ss_pred HHHHHH----HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE----eeCCCCHHHHHHHHHcCCcE
Q 021527 205 TDRMKA----IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV----GFGISKPEHVQQVAGWGADG 275 (311)
Q Consensus 205 ~eri~~----i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v----GfGIst~e~v~~v~~~GADG 275 (311)
.+...+ +.+..-..|++....|. ..|..+.++++.+|+.+ ++||-+ .+|... .+.-..+++|||.
T Consensus 260 ~e~~~~~a~~l~~~Ga~~I~l~DT~G~-----~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAv-ANslaAveAGa~~ 333 (718)
T 3bg3_A 260 LQYYMGLAEELVRAGTHILCIKDMAGL-----LKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGV-AAMLACAQAGADV 333 (718)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECTTSC-----CCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHH-HHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCcCCC-----cCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHH-HHHHHHHHhCCCE
Confidence 344333 33334455777665553 34677889999999987 688766 455553 4555667899987
Q ss_pred E
Q 021527 276 V 276 (311)
Q Consensus 276 v 276 (311)
|
T Consensus 334 V 334 (718)
T 3bg3_A 334 V 334 (718)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00015 Score=67.64 Aligned_cols=165 Identities=23% Similarity=0.332 Sum_probs=97.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|||+|-+|...+.|-++.-. ..-.++.+...++.++++ ++||-+.+|-
T Consensus 50 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~----------~~eE~~Rv~pvI~~l~~~-~vpiSIDT~~------ 112 (294)
T 2dqw_A 50 DPERALERAREMVAEGADILDLGAESTRPGAAPVP----------VEEEKRRLLPVLEAVLSL-GVPVSVDTRK------ 112 (294)
T ss_dssp ---CCHHHHHHHHHHTCSEEEEECC---------------------CCHHHHHHHHHHHHHTT-CSCEEEECSC------
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCC----------HHHHHHHHHHHHHHHHhC-CCeEEEECCC------
Confidence 45677889999999999999999977777433211 112344567788888876 9999999873
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC----CCCh----------HHH-------HHHHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT----PTTP----------TDR-------MKAIVE 213 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis----p~t~----------~er-------i~~i~~ 213 (311)
-+-++.+.++|++ |+.|..-+...++.+.++++|...|.+-. |.+. +++ ++...
T Consensus 113 --~~Va~aAl~aGa~--iINdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~- 187 (294)
T 2dqw_A 113 --PEVAEEALKLGAH--LLNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRAL- 187 (294)
T ss_dssp --HHHHHHHHHHTCS--EEECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHH-
T ss_pred --HHHHHHHHHhCCC--EEEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHH-
Confidence 3456778888999 67776544334677888999988777643 3332 222 22222
Q ss_pred hCCce--EEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHH
Q 021527 214 ASEGF--VYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQV 268 (311)
Q Consensus 214 ~a~gf--iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v 268 (311)
..|+ +++-...|. |. . .....++++++++. .+.|+++ |+|+..-+.++
T Consensus 188 -~~Gi~~IilDPG~Gf-~k--t-~~~n~~ll~~l~~~~~~g~Pvl~--G~Srksfig~l 239 (294)
T 2dqw_A 188 -SAGVPQVVLDPGFGF-GK--L-LEHNLALLRRLDEIVALGHPVLV--GLSRKRTIGEL 239 (294)
T ss_dssp -HTTCSCEEEECCTTS-SC--C-HHHHHHHHHTHHHHHTTSSCBEE--CCTTCHHHHHH
T ss_pred -HCCCCcEEEcCCCCc-cc--C-HHHHHHHHHHHHHHhcCCCCEEE--Eeccchhhhhh
Confidence 2343 666554442 22 1 12334566666553 5789988 45554434333
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00026 Score=66.15 Aligned_cols=157 Identities=17% Similarity=0.267 Sum_probs=96.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+..++.++.+.+.|||+|-+|...+.|-++.-..+.-. +.+...++.+++.+++||.+.+|-
T Consensus 62 ~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~----------~RvvpvI~~l~~~~~vpiSIDT~~------- 124 (297)
T 1tx2_A 62 VDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEI----------KRVVPMIQAVSKEVKLPISIDTYK------- 124 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHH----------HHHHHHHHHHHHHSCSCEEEECSC-------
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHH----------HHHHHHHHHHHhcCCceEEEeCCC-------
Confidence 467889999999999999999998877755432222221 234567788887789999999873
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeCCCC------hHHH-------HHHHHHhCCc----
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTTPTT------PTDR-------MKAIVEASEG---- 217 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lisp~t------~~er-------i~~i~~~a~g---- 217 (311)
.+-++.+.++|++- +.|+.-+. ..++.+.++++|...|.+-...+ .+++ ++... ..|
T Consensus 125 -~~V~~aAl~aGa~i--INdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~--~~GI~~~ 199 (297)
T 1tx2_A 125 -AEVAKQAIEAGAHI--INDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAK--DAGVRDE 199 (297)
T ss_dssp -HHHHHHHHHHTCCE--EEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHH--HTTCCGG
T ss_pred -HHHHHHHHHcCCCE--EEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHH--HcCCChh
Confidence 34566777789885 45554332 34567788999988777654221 1122 22222 233
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeC
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFG 258 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfG 258 (311)
-+++-...|. |.. .....++++++++. .+.|+++|-.
T Consensus 200 ~IilDPg~Gf-gk~---~~~n~~ll~~l~~l~~lg~Pvl~G~S 238 (297)
T 1tx2_A 200 NIILDPGIGF-AKT---PEQNLEAMRNLEQLNVLGYPVLLGTS 238 (297)
T ss_dssp GEEEECCTTS-SCC---HHHHHHHHHTGGGGGGGCSCBEEECT
T ss_pred cEEEeCCCCc-CCC---HHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 3566555543 321 22334666666554 4789988653
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00028 Score=67.53 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=87.9
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCC-CeEEEeCCCChHHHHHHHHHhCC
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI-ELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi-~~I~lisp~t~~eri~~i~~~a~ 216 (311)
+++|++.- +.......++...+.+.|.-|++-.++++++..+....+++.+- .....+.... .++++.+.+..-
T Consensus 44 l~~Pii~a----pM~~vt~~~lA~avA~~GGlgii~~~~s~e~~~~~I~~vk~~~~~pvga~ig~~~-~e~a~~l~eaGa 118 (361)
T 3khj_A 44 LKIPLISS----AMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVLKVKNSGGLRVGAAIGVNE-IERAKLLVEAGV 118 (361)
T ss_dssp ESSSEEEC----SSTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHHTTCCCCEEEECTTC-HHHHHHHHHTTC
T ss_pred cCCCEEee----cCCCCCcHHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHHhccCceEEEEeCCCH-HHHHHHHHHcCc
Confidence 57787773 33323345777777888888888888888887777777776552 2233333333 677777766444
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.++.+-+.. +.+..+.+.++++|+..++||++| ++.++++++++.++|||+++||
T Consensus 119 d~I~ld~a~-------G~~~~~~~~i~~i~~~~~~~Vivg-~v~t~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 119 DVIVLDSAH-------GHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKVG 173 (361)
T ss_dssp SEEEECCSC-------CSBHHHHHHHHHHHHHCCCEEEEE-EECSHHHHHHHHHTTCSEEEEC
T ss_pred CeEEEeCCC-------CCcHHHHHHHHHHHHhcCCcEEEc-cCCCHHHHHHHHHcCcCEEEEe
Confidence 444321211 223456678999988778999875 5678999999999999999996
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00095 Score=61.11 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=104.8
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+...+.++.+.+.|||+|-+|.-. .|+ | ..+++-+.+..|++..++|+.+.+|-
T Consensus 23 ~~~~a~~~a~~~v~~GAdiIDIg~g~-~~v-~----------------~~ee~~rvv~~i~~~~~~pisIDT~~------ 78 (262)
T 1f6y_A 23 DPAPVQEWARRQEEGGARALDLNVGP-AVQ-D----------------KVSAMEWLVEVTQEVSNLTLCLDSTN------ 78 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBCC------C----------------HHHHHHHHHHHHHTTCCSEEEEECSC------
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCC-CCC-C----------------hHHHHHHHHHHHHHhCCCeEEEeCCC------
Confidence 56788999999999999999999511 110 0 11233445666666679999999872
Q ss_pred CHHHHHHHHHHc--CCcEEEecCCCh--hhHHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHH---HH--hCCce--
Q 021527 155 GVDNFMSTVRDI--GIRGLVVPDVPL--EETESLQKEAMKNKIELVLFTT-----PTTPTDRMKAI---VE--ASEGF-- 218 (311)
Q Consensus 155 g~~~fi~~~~~a--GadGviipDlp~--ee~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i---~~--~a~gf-- 218 (311)
.+-++.+.++ |++- +.|+.- ++..++.+.++++|...|.+-. |.|.+++.... .+ ...|+
T Consensus 79 --~~v~~aAl~a~~Ga~i--INdvs~~~d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~ 154 (262)
T 1f6y_A 79 --IKAIEAGLKKCKNRAM--INSTNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPM 154 (262)
T ss_dssp --HHHHHHHHHHCSSCEE--EEEECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCG
T ss_pred --HHHHHHHHhhCCCCCE--EEECCCCcccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCc
Confidence 2345666666 8764 444442 3344678889999987776643 44544443211 11 12333
Q ss_pred --EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEe-----eCCCCHHHH-----HHHHHcCCcEEEE
Q 021527 219 --VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVG-----FGISKPEHV-----QQVAGWGADGVIV 278 (311)
Q Consensus 219 --iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vG-----fGIst~e~v-----~~v~~~GADGvIV 278 (311)
+++-...|.-|.....+..+.+.++++|+.. +.|+.+| ||....+-+ ......|+|.+||
T Consensus 155 ~~IilDPg~g~~g~~~~~~~~~l~~l~~l~~~~~pg~pvl~G~Srksfg~~~~~~l~~t~~~~a~~~g~~~~iv 228 (262)
T 1f6y_A 155 EDLYIDPLILPANVAQDHAPEVLKTLQQIKMLADPAPKTVLGLSNVSQNCQNRPLINRTFLAMAMACGLMSAIA 228 (262)
T ss_dssp GGEEEECCCCCTTTCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGGGTTCSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccEEEeCCCCcCCCChHHHHHHHHHHHHHHHHhCCCCCEEEeecCCcCCCCHHHHHHHHHHHHHHHHhCCeEEE
Confidence 6776655433332222334556677777755 8999997 565322222 2234677887776
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00027 Score=63.14 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=79.3
Q ss_pred CCCC----hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 72 GDPD----LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 72 G~P~----~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
|+|. .+.-...++...+.|+|.|++-++++. +..| +.+...+.++++++..+ |+.+-..
T Consensus 61 ~~P~g~~~~~~k~~~~~~A~~~Gad~Id~viN~g~---------------~~~~-~~~~~~~~i~~v~~a~~-pv~vKvi 123 (225)
T 1mzh_A 61 GFPLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSA---------------FKSE-KYDFVVEELKEIFRETP-SAVHKVI 123 (225)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHH---------------HHTT-CHHHHHHHHHHHHHTCT-TSEEEEE
T ss_pred cCCCCccchhhhHHHHHHHHHcCCCEEEEEecHHH---------------HhcC-ChHHHHHHHHHHHHHhc-CceEEEE
Confidence 5554 344445566777899999997655522 2222 33556777888887766 7655332
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCc
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~ 227 (311)
++. +++..++..++.+.+.+.|.+.| -+.+ || .
T Consensus 124 ~e~-----------------------~~l~~~~~~~~a~~a~eaGad~I--~tst--------------g~--------~ 156 (225)
T 1mzh_A 124 VET-----------------------PYLNEEEIKKAVEICIEAGADFI--KTST--------------GF--------A 156 (225)
T ss_dssp CCG-----------------------GGCCHHHHHHHHHHHHHHTCSEE--ECCC--------------SC--------S
T ss_pred EeC-----------------------CCCCHHHHHHHHHHHHHhCCCEE--EECC--------------CC--------C
Confidence 110 12223333444444444455444 1111 11 0
Q ss_pred cCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcE
Q 021527 228 TGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADG 275 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADG 275 (311)
+|. .. .+.++.+++.+ ++||++.+||+|++++.++++.|||-
T Consensus 157 ~gg---a~---~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~ 200 (225)
T 1mzh_A 157 PRG---TT---LEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADR 200 (225)
T ss_dssp SSC---CC---HHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred CCC---CC---HHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchH
Confidence 121 11 25677777765 69999999999999999999999994
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0002 Score=67.48 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=68.7
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcch
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPI 151 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i 151 (311)
+-+.+..++.++.+.+.|||+|-+|...+.| |+.+... -.++.+...|+.+++++ ++||-+.+|-
T Consensus 61 ~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrP---G~~v~~~--------eEl~Rv~pvI~~l~~~~~~vpISIDT~~--- 126 (318)
T 2vp8_A 61 TFSDAAARDAVHRAVADGADVIDVGGVKAGP---GERVDVD--------TEITRLVPFIEWLRGAYPDQLISVDTWR--- 126 (318)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEC-------------CHH--------HHHHHHHHHHHHHHHHSTTCEEEEECSC---
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCC---CCCCCHH--------HHHHHHHHHHHHHHhhCCCCeEEEeCCC---
Confidence 3356889999999999999999999877766 3111110 01223456788888776 8999999873
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis 200 (311)
-+-++.+.++|++ ||.|+.-+...++.+.++++|...|.+-.
T Consensus 127 -----~~VaeaAl~aGa~--iINDVsg~~d~~m~~vaa~~g~~vVlmh~ 168 (318)
T 2vp8_A 127 -----AQVAKAACAAGAD--LINDTWGGVDPAMPEVAAEFGAGLVCAHT 168 (318)
T ss_dssp -----HHHHHHHHHHTCC--EEEETTSSSSTTHHHHHHHHTCEEEEECC
T ss_pred -----HHHHHHHHHhCCC--EEEECCCCCchHHHHHHHHhCCCEEEECC
Confidence 3456778888999 56666543334567788999988777643
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00043 Score=62.61 Aligned_cols=182 Identities=13% Similarity=0.135 Sum_probs=104.8
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
+..|| +-...|+.++..++++.+.. .++++++|.++ +. ..| .+.++++++. +.+
T Consensus 8 ~~~Li--vALD~~~~~~al~l~~~~~~-~v~~~Kvg~~l---------f~-------~~G------~~~v~~L~~~-g~~ 61 (239)
T 3tr2_A 8 DPKVI--VAIDAGTVEQARAQINPLTP-ELCHLKIGSIL---------FT-------RYG------PAFVEELMQK-GYR 61 (239)
T ss_dssp CCCEE--EECCCSSHHHHHHHHTTCCT-TTCEEEEEHHH---------HH-------HHH------HHHHHHHHHT-TCC
T ss_pred CCCeE--EEeCCCCHHHHHHHHHHhCC-cccEEEeCHHH---------HH-------hhC------HHHHHHHHhc-CCC
Confidence 34453 45677899999888888754 48999999766 11 112 3467777654 678
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcC----CCeEE--EeCCCChH---------
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNK----IELVL--FTTPTTPT--------- 205 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~g----i~~I~--lisp~t~~--------- 205 (311)
|++..-+.++-.+ ....++.+.+.|+|.+.++-.. .+-...+++.+++++ ...+. .++..+..
T Consensus 62 iflDlK~~DI~nT-v~~~~~~~~~~gad~vTvh~~~G~~~~~~a~~~~~~~~~~~~~~l~~Vt~LTS~~~~~l~~~g~~~ 140 (239)
T 3tr2_A 62 IFLDLKFYDIPQT-VAGACRAVAELGVWMMNIHISGGRTMMETVVNALQSITLKEKPLLIGVTILTSLDGSDLKTLGIQE 140 (239)
T ss_dssp EEEEEEECSCHHH-HHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHTCCCSSCCEEEEECSCTTCCHHHHHHTTCCS
T ss_pred EEEEecccccchH-HHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCcCCCceEEEEEEEeeCCHHHHHhcCCCC
Confidence 8887755444322 2446778899999999996443 233444566666553 12222 22322221
Q ss_pred ---HHHHHHHHhCC--ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHH----------HHHHHH
Q 021527 206 ---DRMKAIVEASE--GFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPE----------HVQQVA 269 (311)
Q Consensus 206 ---eri~~i~~~a~--gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e----------~v~~v~ 269 (311)
+...++++.+. |..=+| .++ ..+..+|+.++ -.+++--||+-.. +..++.
T Consensus 141 ~~~~~v~~~A~~a~~~g~~GvV-----------~s~---~e~~~ir~~~~~~fl~vtPGIr~~g~~~~dQ~rv~t~~~~~ 206 (239)
T 3tr2_A 141 KVPDIVCRMATLAKSAGLDGVV-----------CSA---QEAALLRKQFDRNFLLVTPGIRLETDEKGDQKRVMTPRAAI 206 (239)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEE-----------CCH---HHHHHHHTTCCTTSEEEECCBC----------CCBCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCEEE-----------ECc---hhHHHHHHhcCCCcEEECCCcCCCCCCcCcccccCCHHHHH
Confidence 11122222211 111111 011 23566788763 3566766664211 256778
Q ss_pred HcCCcEEEEhhHhhc
Q 021527 270 GWGADGVIVGSAMVK 284 (311)
Q Consensus 270 ~~GADGvIVGSaiv~ 284 (311)
++|||.+|||+.|.+
T Consensus 207 ~aGad~lVvGr~I~~ 221 (239)
T 3tr2_A 207 QAGSDYLVIGRPITQ 221 (239)
T ss_dssp HHTCSEEEECHHHHT
T ss_pred HcCCCEEEEChHHhC
Confidence 899999999999998
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0027 Score=57.94 Aligned_cols=195 Identities=19% Similarity=0.302 Sum_probs=119.4
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH--cCCCHHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA--RGTNFNAIL 128 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~--~G~~~~~~~ 128 (311)
.+.|.++++++++.. .+++=|+ -.++.++++|+|.|=+| |--+-. ..-+. ..+++++.+
T Consensus 9 ~~~lr~l~~~~~~i~--~~~ayD~------~sA~~~~~aG~dai~vg---------~~s~a~--~~G~pD~~~vt~~em~ 69 (255)
T 2qiw_A 9 ATKFASDHESGKLLV--LPTVWDT------WSAGLVEEAGFSGLTIG---------SHPVAD--ATGSSDGENMNFADYM 69 (255)
T ss_dssp HHHHHHHHHTCCCEE--CCEESSH------HHHHHHHHTTCSCEEEC---------HHHHHH--HTTCCTTTCSCHHHHH
T ss_pred HHHHHHHHhCCCcEE--EecCcCH------HHHHHHHHcCCCEEEEC---------hHHHHH--hCCCCCCCCcCHHHHH
Confidence 456888887776532 3333343 45667788999999997 311111 00011 126899999
Q ss_pred HHHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC---------ChhhHHHHHHHHHHc----C
Q 021527 129 SMLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV---------PLEETESLQKEAMKN----K 192 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl---------p~ee~~~~~~~~~~~----g 192 (311)
..++.|.+.+++||+.. +|-++. .+-++++.++|++||.+=|- |.+|..+-.+.+.+. |
T Consensus 70 ~~~~~I~r~~~~pviaD~~~Gyg~~~-----~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g 144 (255)
T 2qiw_A 70 AVVKKITSAVSIPVSVDVESGYGLSP-----ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAG 144 (255)
T ss_dssp HHHHHHHHHCSSCEEEECTTCTTCCH-----HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCEEeccCCCcCcHH-----HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 99999998888999997 454433 45667777899999999774 345554444444444 8
Q ss_pred CCeEEEeCCC----------C-hH---HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEe--
Q 021527 193 IELVLFTTPT----------T-PT---DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVG-- 256 (311)
Q Consensus 193 i~~I~lisp~----------t-~~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG-- 256 (311)
++.++..--. . -+ +|.+.+.+..-..+|+. |+ +. .+.++++.+..++|+.+-
T Consensus 145 ~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e---~~-------~~--~~~~~~i~~~~~~P~n~~~~ 212 (255)
T 2qiw_A 145 VDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPV---GL-------ST--AEQVERLVDAVSVPVNITAH 212 (255)
T ss_dssp CCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEEC---CC-------CS--HHHHHHHHTTCSSCBEEECB
T ss_pred CCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEc---CC-------CC--HHHHHHHHHhCCCCEEEEec
Confidence 8754432111 0 11 44555544444445553 21 11 256888888778886553
Q ss_pred eCCCCH-HHHHHHHHcCCcEEEEhhH
Q 021527 257 FGISKP-EHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 257 fGIst~-e~v~~v~~~GADGvIVGSa 281 (311)
-|-.+| -.+.++.++|..-|+.|+.
T Consensus 213 ~~~~~p~~~~~eL~~lGv~~v~~~~~ 238 (255)
T 2qiw_A 213 PVDGHGAGDLATLAGLGVRRVTFGPL 238 (255)
T ss_dssp TTTBBTTBCHHHHHHTTCCEEECTTH
T ss_pred CCCCCCCCCHHHHHHcCCCEEEEHHH
Confidence 222111 2367888899999999988
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00069 Score=62.04 Aligned_cols=194 Identities=16% Similarity=0.228 Sum_probs=110.6
Q ss_pred EeCCCCChhhHHHHHHHHHHCCC-CEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGS-DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~Ga-D~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
+-...|+.++..++++.+.. .+ +++++|.|+ + +..| .+.++++++. +.+|++..-
T Consensus 9 vALD~~~~~~al~l~~~l~~-~v~~~~KvG~~l---------~-------~~~G------~~~v~~Lk~~-g~~VflDlK 64 (259)
T 3tfx_A 9 VALDLDNEEQLNKILSKLGD-PHDVFVKVGMEL---------F-------YNAG------IDVIKKLTQQ-GYKIFLDLK 64 (259)
T ss_dssp EECCCSCHHHHHHHHHTTCC-GGGCEEEECHHH---------H-------HHHC------HHHHHHHHHT-TCEEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhCc-ccceEEEeCHHH---------H-------HhcC------HHHHHHHHHC-CCcEEEEec
Confidence 56678999999999999864 48 999999666 1 1223 3466677654 788888765
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHc---CC--CeEEEeCCCChH--HHH-----------
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKN---KI--ELVLFTTPTTPT--DRM----------- 208 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~---gi--~~I~lisp~t~~--eri----------- 208 (311)
+.++-.+ ....++.+.+.|+|.+.+.-.. .+-.....+.+++. |- ..++.++-.|+. +.+
T Consensus 65 ~~DIpnT-v~~a~~~~~~~gad~vTVh~~~G~~~~~aa~~~~~~~~~~g~~~~~li~Vt~lTS~~~~~l~~~~g~~~~~~ 143 (259)
T 3tfx_A 65 MHDIPNT-VYNGAKALAKLGITFTTVHALGGSQMIKSAKDGLIAGTPAGHSVPKLLAVTELTSISDDVLRNEQNCRLPMA 143 (259)
T ss_dssp ECSCHHH-HHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBSSCHH
T ss_pred ccccchH-HHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCCHHHHHHHhCCCCCHH
Confidence 5544321 1345677888999999996433 23344455555542 31 124433222221 111
Q ss_pred ---HHHHHhC--CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCH----H------HHHHHHHcC
Q 021527 209 ---KAIVEAS--EGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKP----E------HVQQVAGWG 272 (311)
Q Consensus 209 ---~~i~~~a--~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~----e------~v~~v~~~G 272 (311)
..+++.+ .|..-+|. ++ +.++.+|+.+ +-.+++--||+-. . +..++.++|
T Consensus 144 e~v~~~A~~a~~~G~dGvV~-----------s~---~e~~~ir~~~~~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aG 209 (259)
T 3tfx_A 144 EQVLSLAKMAKHSGADGVIC-----------SP---LEVKKLHENIGDDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWG 209 (259)
T ss_dssp HHHHHHHHHHHHTTCCEEEC-----------CG---GGHHHHHHHHCSSSEEEECCCCCC-----------CHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCEEEE-----------CH---HHHHHHHhhcCCccEEEcCCcCCCCCCcCCccccCCHHHHHHcC
Confidence 1222221 12211111 11 1256666655 3446666666521 1 267788999
Q ss_pred CcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 273 ADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 273 ADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
||.+|||++|.+. .++.+ .++++.+++++
T Consensus 210 ad~iVvGr~I~~a----~dp~~---a~~~i~~~~~~ 238 (259)
T 3tfx_A 210 SSAIVVGRPITLA----SDPKA---AYEAIKKEFNA 238 (259)
T ss_dssp CSEEEECHHHHTS----SSHHH---HHHHHHHHHTC
T ss_pred CCEEEEChHHhCC----CCHHH---HHHHHHHHHHH
Confidence 9999999999983 23433 34444445543
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=65.88 Aligned_cols=47 Identities=30% Similarity=0.398 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 238 VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+.++++++.+++|+++++||++++++.++++.|||+|++|++...
T Consensus 62 ~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~ 108 (253)
T 1thf_D 62 MLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred cHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 35678999998899999999999999999999999999999999876
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0022 Score=61.43 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=42.0
Q ss_pred HHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 240 TLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 240 ~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
..|.++++.. ++||++.+||++++++.+.+..|||+|-+|+.+...+.
T Consensus 256 ~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~~~ 304 (368)
T 3vkj_A 256 ASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAI 304 (368)
T ss_dssp HHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHh
Confidence 4466777766 59999999999999999999999999999999998664
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.74 E-value=8.3e-05 Score=67.30 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=61.0
Q ss_pred CChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 202 TTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 202 ~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..|.+..+.+.+..-..++++...+....+ + ...+.++++.+.+.+|+.+|+||++.|+++++++.|||=|++||+
T Consensus 31 ~dP~~~a~~~~~~gad~lhvvDld~a~~~~---~-~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~ 106 (243)
T 4gj1_A 31 YNPLKKFKEYEKAGAKELHLVDLTGAKDPS---K-RQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSM 106 (243)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEHHHHHCGG---G-CCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTT
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccccc---h-hHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccc
Confidence 456676777767665667777655432221 1 224688998888999999999999999999999999999999998
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
.++
T Consensus 107 a~~ 109 (243)
T 4gj1_A 107 AIK 109 (243)
T ss_dssp TTT
T ss_pred ccc
Confidence 876
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0021 Score=59.87 Aligned_cols=200 Identities=14% Similarity=0.165 Sum_probs=116.4
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH--cCCCHHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA--RGTNFNAIL 128 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~--~G~~~~~~~ 128 (311)
.+.|.++++++++ +..+++=|+ -.++.++++|+|.|=+| |--+-. ...+. ..+++++.+
T Consensus 8 ~~~lr~l~~~~~~--i~~~~a~D~------~sA~~~~~aG~~ai~vs---------g~~~a~--~lG~pD~~~vt~~em~ 68 (295)
T 1s2w_A 8 TTQLKQMLNSKDL--EFIMEAHNG------LSARIVQEAGFKGIWGS---------GLSVSA--QLGVRDSNEASWTQVV 68 (295)
T ss_dssp HHHHHHHHHSSSC--EEEEEECSH------HHHHHHHHHTCSCEEEC---------CHHHHH--TC---------CHHHH
T ss_pred HHHHHHHHhCCCc--EEEecCCCH------HHHHHHHHcCCCEEEeC---------hHHHHH--hCCCCCCCCCCHHHHH
Confidence 4567777777664 334455555 45666778899999997 221211 00111 126888999
Q ss_pred HHHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC-----------------ChhhHHHHHHHH
Q 021527 129 SMLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV-----------------PLEETESLQKEA 188 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl-----------------p~ee~~~~~~~~ 188 (311)
..++.|.+.+++||++. +|-|+. ...+-++.+.++|++||.+=|- |.+|..+-...+
T Consensus 69 ~~~~~I~~~~~~PviaD~d~Gyg~~~---~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa 145 (295)
T 1s2w_A 69 EVLEFMSDASDVPILLDADTGYGNFN---NARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKAC 145 (295)
T ss_dssp HHHHHHHHTCSSCEEEECCSSCSSHH---HHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEecCCCCCCCHH---HHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHH
Confidence 99999998899998886 454421 2345567778899999998553 333433333334
Q ss_pred HHcCC--CeEEEe-CCCC-----hH---HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC--CcEEE
Q 021527 189 MKNKI--ELVLFT-TPTT-----PT---DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST--KPVAV 255 (311)
Q Consensus 189 ~~~gi--~~I~li-sp~t-----~~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~v 255 (311)
++... +.++.. +... -+ +|.+.+.+..-..+|+.+ +++ .. +.++++.+..+ +|+++
T Consensus 146 ~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~--~~~-----~~----~~~~~i~~~~~~~~P~i~ 214 (295)
T 1s2w_A 146 KDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHS--KKA-----DP----SDIEAFMKAWNNQGPVVI 214 (295)
T ss_dssp HHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECC--CSS-----SS----HHHHHHHHHHTTCSCEEE
T ss_pred HHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcC--CCC-----CH----HHHHHHHHHcCCCCCEEE
Confidence 43332 222221 1111 12 455566554444555542 110 11 34555555444 89887
Q ss_pred e---eCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 256 G---FGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 256 G---fGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
. ||-.+ +.++.++|..-|+.|....+..
T Consensus 215 ~~~~~~~~~---~~eL~~lGv~~v~~~~~~~raa 245 (295)
T 1s2w_A 215 VPTKYYKTP---TDHFRDMGVSMVIWANHNLRAS 245 (295)
T ss_dssp CCSTTTTSC---HHHHHHHTCCEEEECSHHHHHH
T ss_pred eCCCCCCCC---HHHHHHcCCcEEEEChHHHHHH
Confidence 5 44443 6788889999999999888744
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0018 Score=60.28 Aligned_cols=201 Identities=16% Similarity=0.257 Sum_probs=119.8
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNA 126 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~ 126 (311)
.+.|.++++++++ +..+++=|+ -.++.++++|+|+|=+| |--+-.+ ++. ..+++++
T Consensus 6 ~~~lr~l~~~~~~--i~~~~a~D~------~sA~~~~~aG~~ai~vs---------~~~~a~~---~~G~pD~~~vt~~e 65 (295)
T 1xg4_A 6 GKAFRAALTKENP--LQIVGTINA------NHALLAQRAGYQAIYLS---------GGGVAAG---SLGLPDLGISTLDD 65 (295)
T ss_dssp HHHHHHHHHHSSS--EEEEECSSH------HHHHHHHHTTCSCEEEC---------HHHHHHT---TTCCCSSSCSCHHH
T ss_pred HHHHHHHHhCCCc--EEEecCcCH------HHHHHHHHcCCCEEEEC---------chHhhhh---hcCCCCCCCCCHHH
Confidence 3457777766654 334455554 45677788999999997 3212110 110 1268999
Q ss_pred HHHHHHHhhccCCCcEEEEe---cC-cchhccCHHHHHHHHHHcCCcEEEecCC---------------ChhhHHHHHHH
Q 021527 127 ILSMLKEVVPQMSCPIALFT---YY-NPILKRGVDNFMSTVRDIGIRGLVVPDV---------------PLEETESLQKE 187 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~---Y~-n~i~~~g~~~fi~~~~~aGadGviipDl---------------p~ee~~~~~~~ 187 (311)
.+..++.|.+.+++||++.. |- |+.. ..+-++.+.++|++||.+=|- |.++..+-...
T Consensus 66 m~~~~~~I~~~~~~PviaD~d~Gyg~~~~~---~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~A 142 (295)
T 1xg4_A 66 VLTDIRRITDVCSLPLLVDADIGFGSSAFN---VARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRA 142 (295)
T ss_dssp HHHHHHHHHHHCCSCEEEECTTCSSSSHHH---HHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEecCCcccCCCHHH---HHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHH
Confidence 99999999988899988874 43 3221 234566777899999999653 23343333333
Q ss_pred HHHcCC--CeEEEe-CCCCh-------HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEe-
Q 021527 188 AMKNKI--ELVLFT-TPTTP-------TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVG- 256 (311)
Q Consensus 188 ~~~~gi--~~I~li-sp~t~-------~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG- 256 (311)
+++... +.++.. +...- .+|.+.+.+..-..+|+. |++ + .+.++++.+..++|+++.
T Consensus 143 a~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e---~~~------~---~~~~~~i~~~~~iP~~~N~ 210 (295)
T 1xg4_A 143 AVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPE---AIT------E---LAMYRQFADAVQVPILANI 210 (295)
T ss_dssp HHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEET---TCC------S---HHHHHHHHHHHCSCBEEEC
T ss_pred HHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEe---CCC------C---HHHHHHHHHHcCCCEEEEe
Confidence 333332 322222 11111 245555555444445543 221 1 256777777778998653
Q ss_pred --eCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 257 --FGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 257 --fGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
||-+-.-+.+++.++|++.|++|.++.+..
T Consensus 211 ~~~g~~p~~~~~eL~~~G~~~v~~~~~~~~aa 242 (295)
T 1xg4_A 211 TEFGATPLFTTDELRSAHVAMALYPLSAFRAM 242 (295)
T ss_dssp CSSSSSCCCCHHHHHHTTCSEEEESSHHHHHH
T ss_pred cccCCCCCCCHHHHHHcCCCEEEEChHHHHHH
Confidence 333322356788899999999999888644
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0001 Score=66.51 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+.+.++.+.+..-..+++..... .|...+ ...+.++++++.+++|+++++||++++++.++++.|||+|++|+++.
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~-~~~~~g---~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDR-DGTKSG---YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTT-SSCSSC---CCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred HHHHHHHHHHCCCCEEEEEecCc-ccCCCc---ccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 34555555554445555543221 111111 12478999999899999999999999999999999999999999988
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.003 Score=58.58 Aligned_cols=202 Identities=21% Similarity=0.241 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFN 125 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~ 125 (311)
-...|.++++++++. ..+++=|+ -.++.++++|+|.|=+| |--+-.+ .+. ..++++
T Consensus 9 ~~~~lr~l~~~~~~i--~~~~a~D~------~sA~i~e~aGf~ai~vs---------~s~~a~~---~lG~pD~~~vt~~ 68 (287)
T 3b8i_A 9 LRAMFRALLDSSRCY--HTASVFDP------MSARIAADLGFECGILG---------GSVASLQ---VLAAPDFALITLS 68 (287)
T ss_dssp HHHHHHHHHHSSCCE--ECEECCSH------HHHHHHHHTTCSCEEEC---------HHHHHHH---HHSCCSSSCSCHH
T ss_pred HHHHHHHHHhCCCcE--EEecCCCH------HHHHHHHHcCCCEEEeC---------cHHHHHH---hcCCCCCCCCCHH
Confidence 345788888776643 33444444 45677788999999997 4322211 121 226899
Q ss_pred HHHHHHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC--------------ChhhHHHHHHHH
Q 021527 126 AILSMLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV--------------PLEETESLQKEA 188 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl--------------p~ee~~~~~~~~ 188 (311)
+.+..++.|.+.+++||++. +|-|+. ...+-++.+.++|++||.+=|- |.+|..+-.+.+
T Consensus 69 em~~~~~~I~r~~~~PviaD~d~Gyg~~~---~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa 145 (287)
T 3b8i_A 69 EFVEQATRIGRVARLPVIADADHGYGNAL---NVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAA 145 (287)
T ss_dssp HHHHHHHHHHTTCSSCEEEECTTCSSSHH---HHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCHH---HHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHH
Confidence 99999999999999998886 343322 1234566777899999999664 335655555666
Q ss_pred HHcCCC--eEEEe-CCCC------hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE-eeC
Q 021527 189 MKNKIE--LVLFT-TPTT------PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV-GFG 258 (311)
Q Consensus 189 ~~~gi~--~I~li-sp~t------~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v-GfG 258 (311)
.+.++. .++.. +... ..+|.+.+.+..-..+|+.. + +. .+.++++.+..++|+++ .||
T Consensus 146 ~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~---~-------~~--~~~~~~i~~~~~~P~ii~~~g 213 (287)
T 3b8i_A 146 LEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVG---V-------RD--FAHLEAIAEHLHIPLMLVTYG 213 (287)
T ss_dssp HHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEEC---C-------CS--HHHHHHHHTTCCSCEEEECTT
T ss_pred HHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEecC---C-------CC--HHHHHHHHHhCCCCEEEeCCC
Confidence 666552 22211 1111 12566666554444566542 2 11 25688888888899763 334
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
-+..-+++++.++|..-|+.|..+.+.-
T Consensus 214 ~~~~~~~~eL~~lGv~~v~~~~~~~raa 241 (287)
T 3b8i_A 214 NPQLRDDARLARLGVRVVVNGHAAYFAA 241 (287)
T ss_dssp CGGGCCHHHHHHTTEEEEECCCHHHHHH
T ss_pred CCCCCCHHHHHHcCCcEEEEChHHHHHH
Confidence 3222246788889999999999888643
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0084 Score=55.24 Aligned_cols=198 Identities=16% Similarity=0.177 Sum_probs=119.1
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH--cCCCHHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA--RGTNFNAIL 128 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~--~G~~~~~~~ 128 (311)
.+.|.+++++ + +..+++=|+ -.++.++++|+|.|=+| |--+-. ..-+. ..+++++.+
T Consensus 7 ~~~lr~l~~~-~---i~~~~a~D~------~sA~~~~~aG~~ai~vs---------g~s~a~--~~G~pD~~~vt~~em~ 65 (275)
T 2ze3_A 7 ARSFHALHQT-G---FLLPNAWDV------ASARLLEAAGFTAIGTT---------SAGIAH--ARGRTDGQTLTRDEMG 65 (275)
T ss_dssp HHHHHHHHHH-C---EEECEESSH------HHHHHHHHHTCSCEEEC---------HHHHHH--HSCCCSSSSSCHHHHH
T ss_pred HHHHHHHhhC-C---eeEecccCH------HHHHHHHHcCCCEEEEC---------cHHHHH--hCCCCCCCCCCHHHHH
Confidence 3467777664 2 445555554 45666778899999997 322221 10010 126899999
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCH---HHHHHHHHHcCCcEEEecCC---------ChhhHHHHHHHHHHc----C
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGV---DNFMSTVRDIGIRGLVVPDV---------PLEETESLQKEAMKN----K 192 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~---~~fi~~~~~aGadGviipDl---------p~ee~~~~~~~~~~~----g 192 (311)
..++.|.+.+++||++..-+- |..+. .+-++.+.++|++||.+=|- |.+|..+-.+.+++. |
T Consensus 66 ~~~~~I~~~~~~pviaD~d~G--yg~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g 143 (275)
T 2ze3_A 66 REVEAIVRAVAIPVNADIEAG--YGHAPEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASG 143 (275)
T ss_dssp HHHHHHHHHCSSCEEEECTTC--SSSSHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCCEEeecCCC--CCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcC
Confidence 999999988889999974211 11123 34566777899999999764 345544444444444 8
Q ss_pred CCeEEEeCCCC--------h----H---HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEee
Q 021527 193 IELVLFTTPTT--------P----T---DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGF 257 (311)
Q Consensus 193 i~~I~lisp~t--------~----~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGf 257 (311)
++.++..-... + + +|.+.+.+..-..+|+. ++ +. .+.++++.+..++|+.+-.
T Consensus 144 ~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e---~~-------~~--~~~~~~i~~~~~~P~n~~~ 211 (275)
T 2ze3_A 144 VPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVP---LA-------LQ--SQDIRALADALRVPLNVMA 211 (275)
T ss_dssp SCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECT---TC-------CC--HHHHHHHHHHCSSCEEEEC
T ss_pred CCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEEC---CC-------CC--HHHHHHHHHhcCCCEEEec
Confidence 87554431111 1 1 34444444333334432 11 11 2567777777788875532
Q ss_pred --CCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 258 --GISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 258 --GIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+.-+ ++++.++|..-|+.|..+.+..
T Consensus 212 ~~~~~~---~~eL~~lGv~~v~~~~~~~raa 239 (275)
T 2ze3_A 212 FPGSPV---PRALLDAGAARVSFGQSLMLAT 239 (275)
T ss_dssp CTTSCC---HHHHHHTTCSEEECTTHHHHHH
T ss_pred CCCCCC---HHHHHHcCCcEEEEChHHHHHH
Confidence 3333 5788889999999999988754
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0001 Score=65.68 Aligned_cols=75 Identities=23% Similarity=0.215 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+..+.+.+..-.++++....+..+ +.. .. +.++++++.+++|+.+++||++++++..+++.|||+|++|++...
T Consensus 34 ~~~a~~~~~~Gad~i~v~~~d~~~~---~~~-~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~ 108 (244)
T 2y88_A 34 VDAALGWQRDGAEWIHLVDLDAAFG---RGS-NH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALE 108 (244)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHTT---SCC-CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcCccccc---CCC-hH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhh
Confidence 3444444444444566554333221 112 23 789999998999999999999999999999999999999998765
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.011 Score=55.25 Aligned_cols=201 Identities=15% Similarity=0.170 Sum_probs=119.2
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNA 126 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~ 126 (311)
.+.|.++..++++ .+...++=|+ -.++.++++|+|.|=++ |--+-.+ .+. ..+++++
T Consensus 6 ~~~Lr~ll~~~~~-~i~~~~a~D~------~sA~l~e~aGf~ai~vs---------G~~~a~~---~~G~pD~~~vt~~e 66 (302)
T 3fa4_A 6 ATSLRRALENPDS-FIVAPGVYDG------LSARVALSAGFDALYMT---------GAGTAAS---VHGQADLGICTLND 66 (302)
T ss_dssp HHHHHHHHHSTTC-CEEEEEECSH------HHHHHHHTTTCSCEEEC---------HHHHHHH---HHSCCSSSCCCHHH
T ss_pred HHHHHHHHhCCCC-eEEEecCcCH------HHHHHHHHcCCCEEEeC---------cHHHHHH---HcCCCCCCcCCHHH
Confidence 4566666655543 2333344444 45667788999999994 3222111 121 1268899
Q ss_pred HHHHHHHhhcc-CCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC---------------ChhhHH-HHHH
Q 021527 127 ILSMLKEVVPQ-MSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV---------------PLEETE-SLQK 186 (311)
Q Consensus 127 ~~~~i~~ir~~-~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl---------------p~ee~~-~~~~ 186 (311)
.+..++.|.+. .++||++. +|.|+. ...+-++.+.++|+.||.+=|- |.+|.. +++.
T Consensus 67 m~~~~~~I~~~~~~~PviaD~d~Gyg~~~---~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~A 143 (302)
T 3fa4_A 67 MRANAEMISNISPSTPVIADADTGYGGPI---MVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRA 143 (302)
T ss_dssp HHHHHHHHHTTSTTSCEEEECTTTTSSHH---HHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCEEEECCCCCCCHH---HHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHH
Confidence 99999998775 48999987 455532 1345677888899999999663 344533 3333
Q ss_pred HHH---HcCCCeEEEeCCCC--------hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEE
Q 021527 187 EAM---KNKIELVLFTTPTT--------PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVA 254 (311)
Q Consensus 187 ~~~---~~gi~~I~lisp~t--------~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~ 254 (311)
... +.+.+.++..=-.+ ..+|.+.+.+..-..+|... .+ + .+.++++.+.. ++|+.
T Consensus 144 a~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g---~~------~---~~ei~~~~~~~~~~Pl~ 211 (302)
T 3fa4_A 144 AVQARQRIGSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFLEG---IT------S---REMARQVIQDLAGWPLL 211 (302)
T ss_dssp HHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETT---CC------C---HHHHHHHHHHTTTSCEE
T ss_pred HHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHHHHHcCCCEEeecC---CC------C---HHHHHHHHHHhcCCcee
Confidence 322 23666555432111 13666666665555666542 21 1 24466665554 47876
Q ss_pred Ee---eCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 255 VG---FGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 255 vG---fGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+. +|-...-.+.++.++|..-|+.|..+.+.
T Consensus 212 ~n~~~~g~~p~~~~~eL~~lGv~~v~~~~~~~ra 245 (302)
T 3fa4_A 212 LNMVEHGATPSISAAEAKEMGFRIIIFPFAALGP 245 (302)
T ss_dssp EECCTTSSSCCCCHHHHHHHTCSEEEETTTTHHH
T ss_pred EEEecCCCCCCCCHHHHHHcCCCEEEEchHHHHH
Confidence 63 33221123667788899999999888774
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00058 Score=70.09 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHCCCCEEEE--cCCC----------CCCCCChHHHHHHHHHHHHcCCCHH----HHHHHHHHhhccC--
Q 021527 77 STTAEALKLLDSCGSDIIEL--GVPY----------SDPLADGPVIQAAATRSLARGTNFN----AILSMLKEVVPQM-- 138 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl--G~Pf----------sDP~aDGp~Iq~a~~~Al~~G~~~~----~~~~~i~~ir~~~-- 138 (311)
+.+.+.++.+.++|.|+||| +.+| ++---| +.|-+++ -.+++++.+|+.+
T Consensus 156 ~~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D------------~yGGs~enR~r~~~ei~~avr~~~g~ 223 (690)
T 3k30_A 156 RWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTD------------EYGGSLENRMRLLRELLEDTLDECAG 223 (690)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCS------------TTSSSHHHHTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCcc------------ccCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 57888999999999999999 2222 222223 1222332 3467888888775
Q ss_pred CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 139 SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
+.||.+-.-.+..+.. .+..++..++.+.+.+ +++.+-+..-+ -.+. .....+
T Consensus 224 ~~~v~~r~s~~~~~~~--------------------g~~~~~~~~~~~~l~~-~~d~~~v~~~~-~~~~-----~~~~~~ 276 (690)
T 3k30_A 224 RAAVACRITVEEEIDG--------------------GITREDIEGVLRELGE-LPDLWDFAMGS-WEGD-----SVTSRF 276 (690)
T ss_dssp SSEEEEEEECCCCSTT--------------------SCCHHHHHHHHHHHTT-SSSEEEEECSC-HHHH-----TCCTTT
T ss_pred CceEEEEECccccCCC--------------------CCCHHHHHHHHHHHHh-hcCEEEEeccc-cccc-----CCCCcc
Confidence 5677765322211111 1223555556666655 56655443321 1010 000000
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
. ... ...++++++|+.+++||++.+||++++++.++++.| ||.|-+|-+++.
T Consensus 277 ---------~--~~~---~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~ 329 (690)
T 3k30_A 277 ---------A--PEG---RQEEFVAGLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIA 329 (690)
T ss_dssp ---------C--CTT---TTHHHHTTSGGGCSSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ---------C--Ccc---ccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHh
Confidence 0 001 123678889999999999999999999999999988 999999988764
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00035 Score=64.79 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=98.4
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|||+|-+|...+.|-++--..+. .++.+...++.+++++++||-+.+|-
T Consensus 36 ~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~e----------E~~rv~pvi~~l~~~~~~piSIDT~~------ 99 (282)
T 1aj0_A 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEE----------ELQRVIPVVEAIAQRFEVWISVDTSK------ 99 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHH----------HHHHHHHHHHHHHHHCCCEEEEECCC------
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHH----------HHHHHHHHHHHHHhhcCCeEEEeCCC------
Confidence 45788999999999999999999977666443111110 11234567888887789999998873
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC---CCCh-------------H----HHHHHHHHh
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT---PTTP-------------T----DRMKAIVEA 214 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis---p~t~-------------~----eri~~i~~~ 214 (311)
.+-++.+.++|++- |.|..-+...++.+.++++|...|.+-. |.+. . ++++...
T Consensus 100 --~~va~aAl~aGa~i--INdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~-- 173 (282)
T 1aj0_A 100 --PEVIRESAKVGAHI--INDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCE-- 173 (282)
T ss_dssp --HHHHHHHHHTTCCE--EEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHH--
T ss_pred --HHHHHHHHHcCCCE--EEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHH--
Confidence 34677788889885 4554432233466778899998887653 3331 1 1222222
Q ss_pred CCc----eEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEee
Q 021527 215 SEG----FVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGF 257 (311)
Q Consensus 215 a~g----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGf 257 (311)
..| -+++-...|. |. ......++++++++. .+.|+++|-
T Consensus 174 ~~Gi~~~~IilDPg~gf-~k---~~~~n~~ll~~l~~~~~~g~P~l~G~ 218 (282)
T 1aj0_A 174 QAGIAKEKLLLDPGFGF-GK---NLSHNYSLLARLAEFHHFNLPLLVGM 218 (282)
T ss_dssp HTTCCGGGEEEECCTTS-SC---CHHHHHHHHHTGGGGGGGCSCBEECC
T ss_pred HcCCChhhEEEeCCCCc-cc---CHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 233 3666665553 32 122335667776654 478998854
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00019 Score=64.15 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=43.4
Q ss_pred HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 238 VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+.++++++.+++|+++++||++++++.++++.|||+|++|+++..
T Consensus 63 ~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 109 (252)
T 1ka9_F 63 LLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 109 (252)
T ss_dssp HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred cHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 34678999998999999999999999999999999999999999875
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0005 Score=64.57 Aligned_cols=161 Identities=12% Similarity=0.119 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE-EecCcchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL-FTYYNPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil-m~Y~n~i~~~g 155 (311)
+...+.++.+.+.|||+|-+|...++|-+. .++.++..+.++.+++.+++|+.+ .+ -|+-+.
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~--------------~vs~eee~~vV~~v~~~~~vplsI~DT-~~~~~~-- 136 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQ--------------NRSGAELAEVCKAVADAIDVPLMIIGC-GVEEKD-- 136 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTT--------------CCCHHHHHHHHHHHHHHCSSCEEEECC-SCHHHH--
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCC--------------CCCHHHHHHHHHHHHHhCCceEEEECC-CCCCCC--
Confidence 357788899999999999999988888433 255667777899998889999999 66 111111
Q ss_pred HHHHHHHHHHcCCc-EEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh--CCce----EEEEecCCcc
Q 021527 156 VDNFMSTVRDIGIR-GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA--SEGF----VYLVSSIGVT 228 (311)
Q Consensus 156 ~~~fi~~~~~aGad-GviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~--a~gf----iY~vs~~G~T 228 (311)
.+-++.+.++|++ --|+.|..-+...++.+.++++|...|.+ ++.. .+.++++.+. ..|+ |++-...|.-
T Consensus 137 -~~V~eaal~aga~~k~iINdvs~~~~~~~~~~aa~~g~~vv~m-~~~d-v~~l~~~~~~a~~~Gi~~e~IilDPg~g~~ 213 (310)
T 2h9a_B 137 -AEIFPVIGEALSGRNCLLSSATKDNYKPIVATCMVHGHSVVAS-APLD-INLSKQLNIMIMEMNLAPNRIIMDPLIGAL 213 (310)
T ss_dssp -HHHHHHHHHHTTTSCCEEEEECTTTHHHHHHHHHHHTCEEEEE-CSSC-HHHHHHHHHHHHTTTCCGGGEEEECCCCCT
T ss_pred -HHHHHHHHHhCCCCCCEEEECCCCccHHHHHHHHHhCCCEEEE-ChhH-HHHHHHHHHHHHHCCCChhhEEEeCCCccc
Confidence 3456778888886 33456655455667888889999876654 4322 2222222221 3454 7776655532
Q ss_pred CCCCCCCchHHHHHHH--Hhhc--CCCcEEEee
Q 021527 229 GARASISGHVQTLLRE--IKES--STKPVAVGF 257 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~--vk~~--~~~Pv~vGf 257 (311)
|....-.....+.+++ +.+. .+.|+++|-
T Consensus 214 g~~~e~~~~~l~~ir~~al~~~~~lg~P~l~g~ 246 (310)
T 2h9a_B 214 GYGIEYSYSIIERMRLGALTGDKILAMPVVCFI 246 (310)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCGGGCSCBEECH
T ss_pred cCchHhHHHHHHHHHHhhhhhhhcCCCCEEEEc
Confidence 3211111123455665 3322 478999976
|
| >1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0032 Score=57.15 Aligned_cols=193 Identities=19% Similarity=0.248 Sum_probs=115.8
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
|++..++|++.+-.++..+.| +.++.+...|+|++-++...+ | .-. ++.-..+..
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p------~~~e~a~~~gaD~v~lDlEd~-p-----~~~-------------~~a~~~~~~ 64 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNP------ISTEVLGLAGFDWLVLDGEHA-P-----NDI-------------STFIPQLMA 64 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSH------HHHHHHTTSCCSEEEEESSSS-S-----CCH-------------HHHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCH------HHHHHHHhCCCCEEEEcCCCC-C-----CCH-------------HHHHHHHHH
Confidence 333334577666667766555 677788899999999985544 3 211 122223444
Q ss_pred hhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHH----------------------
Q 021527 134 VVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMK---------------------- 190 (311)
Q Consensus 134 ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~---------------------- 190 (311)
+.. ...|+++-.-.+ . ..+++.+.++|++||++|-.- .+|...+.+.++.
T Consensus 65 ~~~-~~~~~~VRv~~~-----~-~~~i~~~l~~g~~gI~~P~V~s~~ev~~~~~~~~~~p~g~Rg~~~~~~~~~~g~~~~ 137 (256)
T 1dxe_A 65 LKG-SASAPVVRVPTN-----E-PVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVAD 137 (256)
T ss_dssp TTT-CSSEEEEECSSS-----C-HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTT
T ss_pred HHh-CCCcEEEECCCC-----C-HHHHHHHHhcCCceeeecCcCCHHHHHHHHHHhcCCCCCccCCCcchhhhhcCchHH
Confidence 432 456777765332 1 234788889999999999763 3566666655531
Q ss_pred ------cCCCeEEEeCCCChH--HHHHHHHHh-CCceEEEE-----ecCCccCCCCCCCchHHHHHHHHhhc---CCCcE
Q 021527 191 ------NKIELVLFTTPTTPT--DRMKAIVEA-SEGFVYLV-----SSIGVTGARASISGHVQTLLREIKES---STKPV 253 (311)
Q Consensus 191 ------~gi~~I~lisp~t~~--eri~~i~~~-a~gfiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~---~~~Pv 253 (311)
..+.++.++ .|+. +.+.+|++. .-.++++. ...|..+. ...+.+...++++-.. .++|+
T Consensus 138 ~~~~~~~~~~v~~~I--Et~~av~~~~eIa~~~~vd~l~iG~~DL~~~lg~~~~--~~~p~v~~a~~~iv~aa~a~G~~~ 213 (256)
T 1dxe_A 138 YFAQSNKNITILVQI--ESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGN--ASHPDVQKAIQHIFNRASAHGKPS 213 (256)
T ss_dssp HHHHHTTSCEEEEEE--CSHHHHHTHHHHHTSTTCCEEEECHHHHHHHTTCTTC--TTSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHhcCcccEEEEEE--CCHHHHHhHHHHhCCCCCCEEEEChHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHHhCCce
Confidence 124445555 4543 557777652 12355553 13343332 2345565566655332 37887
Q ss_pred EEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 254 AVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 254 ~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+ +. .+++.+....+.|.+-+.+|+-..-
T Consensus 214 ~v-~~-~d~~~~~~~~~~G~~~~s~~~d~~~ 242 (256)
T 1dxe_A 214 GI-LA-PVEADARRYLEWGATFVAVGSDLGV 242 (256)
T ss_dssp EE-EC-CSHHHHHHHHHTTCCEEEEEEHHHH
T ss_pred EE-ec-CCHHHHHHHHHcCCCEEEechHHHH
Confidence 54 33 4799999999999999999976543
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00098 Score=61.69 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=97.5
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
+-+.+..++.++.+.+.|||+|-+|...+.|-++...-+ -.++.+...++.+++. ++||-+.+|-
T Consensus 25 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~----------eE~~Rv~pvi~~l~~~-~~piSIDT~~---- 89 (280)
T 1eye_A 25 YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPA----------VETSRVIPVVKELAAQ-GITVSIDTMR---- 89 (280)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECC------------------------HHHHHHHHHHHHHT-TCCEEEECSC----
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHH----------HHHHHHHHHHHHhhcC-CCEEEEeCCC----
Confidence 346788999999999999999999987766643321111 2334556788888766 8999998873
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeC---CCChH------------------HHHHH
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTT---PTTPT------------------DRMKA 210 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lis---p~t~~------------------eri~~ 210 (311)
.+-++.+.++|++- |.|+.-+. ..++.+.++++|...|.+-. |.+.. ++++.
T Consensus 90 ----~~va~aAl~aGa~i--INdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~ 163 (280)
T 1eye_A 90 ----ADVARAALQNGAQM--VNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVAD 163 (280)
T ss_dssp ----HHHHHHHHHTTCCE--EEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCE--EEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHH
Confidence 34677888889875 45544222 23567778899998887653 33211 22322
Q ss_pred HHHhC--CceEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHH
Q 021527 211 IVEAS--EGFVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVA 269 (311)
Q Consensus 211 i~~~a--~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~ 269 (311)
..+.. ..-|++-...|. |. . .....++++++++. .+.|+++ |+|+..-+.+++
T Consensus 164 a~~~Gi~~~~IilDPg~Gf-~k--~-~~~n~~ll~~l~~~~~~g~Pvl~--G~Srksfi~~~~ 220 (280)
T 1eye_A 164 AVAAGVDPARLVLDPGLGF-AK--T-AQHNWAILHALPELVATGIPVLV--GASRKRFLGALL 220 (280)
T ss_dssp HHHTTCCGGGEEEECCTTS-SC--C-HHHHHHHHHTHHHHHTTSSCBEE--CCTTCHHHHHHT
T ss_pred HHHcCCChhhEEEECCCCc-cc--C-HHHHHHHHHHHHHhhcCCCCEEE--EecchHHHHhhh
Confidence 22211 113666665542 21 1 22234455555443 5789988 555544444443
|
| >1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0023 Score=60.66 Aligned_cols=196 Identities=13% Similarity=0.098 Sum_probs=115.4
Q ss_pred HHHHHHHHHHH-cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 49 GLAETFTRLKK-QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 49 ~i~~~f~~~~~-~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
++.++++..++ +|+..+-.|+..+.| +.++.+...|+|+|-|+... +|.-. ++.
T Consensus 27 ~lk~~l~~~~~~~g~~~ig~~l~i~~p------~~~e~a~~~GaD~vilDlEh------a~~~~-------------e~~ 81 (339)
T 1izc_A 27 NLRQALKDAMADPSKTLMGVAHGIPST------FVTKVLAATKPDFVWIDVEH------GMFNR-------------LEL 81 (339)
T ss_dssp CHHHHHHHHHHCGGGCEEEEEECSCCH------HHHHHHHHTCCSEEEEETTT------SCCCH-------------HHH
T ss_pred HHHHHHHhhhccCCCeEEEEEEECCCH------HHHHHHHhCCCCEEEEECCC------CCCcH-------------HHH
Confidence 35555442222 456666667766655 67777888999999998443 32211 112
Q ss_pred HHHHHHhhc--cCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHH--------------
Q 021527 128 LSMLKEVVP--QMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMK-------------- 190 (311)
Q Consensus 128 ~~~i~~ir~--~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~-------------- 190 (311)
.+.+..+.. ..+.|+++-.- .. +. ..++.+.++|++||++|-+- .||..++++.++.
T Consensus 82 ~~~l~a~~~~~~~~~~~~VRv~--~~---~~-~di~~~LdaGa~gImlP~V~saee~~~~~~~~~~~p~g~Rg~~~~a~~ 155 (339)
T 1izc_A 82 HDAIHAAQHHSEGRSLVIVRVP--KH---DE-VSLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFS 155 (339)
T ss_dssp HHHHHHHHHHTTTCSEEEEECC--TT---CH-HHHHHHHHHTCSEEEETTCCCHHHHHHHHHHHSCTTTCCCCCCSTTCB
T ss_pred HHHHHHhhhcCCCCCeEEEEeC--CC---CH-HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHhccCccCcccccchhhc
Confidence 233444331 12367777653 22 12 46788888999999999764 4666777766643
Q ss_pred cC--------------------CCeEEEeCCCChH--HHHHHHHHh-CCceEEEEe-----c--------CCccCCCCCC
Q 021527 191 NK--------------------IELVLFTTPTTPT--DRMKAIVEA-SEGFVYLVS-----S--------IGVTGARASI 234 (311)
Q Consensus 191 ~g--------------------i~~I~lisp~t~~--eri~~i~~~-a~gfiY~vs-----~--------~G~TG~~~~~ 234 (311)
+| +.++.++ .|+. +.+.+|++. .-.++++.+ . .|..+
T Consensus 156 ~G~~~~~~~~~~~~y~~~a~~~i~vi~mI--Et~~av~nldeIaa~~~vD~l~iG~~DLs~~~~~~~~~~lG~~~----- 228 (339)
T 1izc_A 156 PGIADASLFPNDPYNVATSNNHVCIIPQI--ESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVP----- 228 (339)
T ss_dssp TTTBCCCSSTTCTTCHHHHHHHCEEEEEE--CSHHHHHTHHHHHTCTTCCCEEECHHHHHHHTTCCTTCCTTSCC-----
T ss_pred ccccccccccchhhhhhhcCcCceEEEEE--ChHHHHHHHHHHhcCCCCCEEEECHHHHHhhhhcccchhhCCCC-----
Confidence 11 2244444 4443 557777642 123555531 1 33322
Q ss_pred CchHHHHHHHHhhc---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 235 SGHVQTLLREIKES---STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 235 ~~~~~~~l~~vk~~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+...++++-.. .++|+ |.-..+++++......|.|++++++-+..
T Consensus 229 ~p~v~~a~~~iv~aaraaGk~~--g~~~~d~~~a~~~~~~Gf~~l~~~~di~~ 279 (339)
T 1izc_A 229 HPTFVEAMTKFSTAAQRNGVPI--FGGALSVDMVPSLIEQGYRAIAVQFDVWG 279 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCE--EEECSSGGGHHHHHHTTEEEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCce--eEecCCHHHHHHHHHhCCCEEEecHHHHH
Confidence 45566666665332 37887 44446789999999999999999985544
|
| >2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.015 Score=53.73 Aligned_cols=192 Identities=19% Similarity=0.284 Sum_probs=116.8
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
|++.-+.|+..+-.|+..+.| +.++.+...|+|+|-++..-+ |. ..+++..+++.
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p------~~~e~a~~~GaD~v~lDlEh~------~~-------------~~~~~~~~l~a 84 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSS------YSAELLAGAGFDWLLIDGEHA------PN-------------NVQTVLTQLQA 84 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCH------HHHHHHHTSCCSEEEEESSSS------SC-------------CHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCH------HHHHHHHhCCCCEEEEeCCCc------cc-------------hHHHHHHHHHH
Confidence 333334677677778887777 677888899999999985543 21 11233334444
Q ss_pred hhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHH-----c----------------
Q 021527 134 VVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMK-----N---------------- 191 (311)
Q Consensus 134 ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~-----~---------------- 191 (311)
+.. ...|+++-.-.+ .. ..++.+.++|++||++|-.- .||..++.+.++. .
T Consensus 85 ~~~-~~~~~~VRv~~~-----d~-~di~~~ld~ga~~ImlP~V~saeea~~~~~~~~~~p~G~Rg~g~~~~ra~~~g~~~ 157 (287)
T 2v5j_A 85 IAP-YPSQPVVRPSWN-----DP-VQIKQLLDVGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSALARASRWNRIP 157 (287)
T ss_dssp HTT-SSSEEEEECSSS-----CH-HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHTSCTTTSCCCGGGTTTGGGTTTTST
T ss_pred HHh-cCCCEEEEECCC-----CH-HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHhccCccCccccccchhhhhhccchh
Confidence 432 366777765432 11 26778888999999999764 3556666554421 0
Q ss_pred --------CCCeEEEeCCCChH--HHHHHHHHhCCc--eEEEE-----ecCCccCCCCCCCchHHHHHHHHhhc---CCC
Q 021527 192 --------KIELVLFTTPTTPT--DRMKAIVEASEG--FVYLV-----SSIGVTGARASISGHVQTLLREIKES---STK 251 (311)
Q Consensus 192 --------gi~~I~lisp~t~~--eri~~i~~~a~g--fiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~---~~~ 251 (311)
.+.++.++ .|+. +.+.+|++ ..+ ++++. ...|..+. ...+.+...++++-.. .++
T Consensus 158 ~y~~~~~~~~~vi~mI--Et~~av~n~deIaa-~~~vD~l~iG~~DLs~~lg~~~~--~~~p~v~~a~~~iv~aaraaG~ 232 (287)
T 2v5j_A 158 DYLQKANDQMCVLVQI--ETREAMKNLPQILD-VEGVDGVFIGPADLSADMGYAGN--PQHPEVQAAIEQAIVQIRESGK 232 (287)
T ss_dssp THHHHHHHHCEEEEEE--CSHHHHHTHHHHHT-STTEEEEEECHHHHHHHTTSTTC--CCSHHHHHHHHHHHHHHHHTTS
T ss_pred hhHhhcCCCcEEEEEE--CcHHHHHHHHHHhC-cCCCCEEEECHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHHcCC
Confidence 14445555 4543 55777764 334 44442 13343332 2345566556655332 368
Q ss_pred cEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 252 Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|+.+ + ..+++.+....+.|++-+.+|+-..-
T Consensus 233 ~~gv-~-~~d~~~a~~~~~~G~~~~s~~~d~~~ 263 (287)
T 2v5j_A 233 APGI-L-IANEQLAKRYLELGALFVAVGVDTTL 263 (287)
T ss_dssp EEEE-E-CCCHHHHHHHHHTTCSEEEEEEHHHH
T ss_pred eeEE-e-cCCHHHHHHHHHhCCCEEEECcHHHH
Confidence 7644 3 35899999999999999999986544
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0028 Score=59.03 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=108.3
Q ss_pred cEEEEEeC----CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--
Q 021527 64 ALIPYITA----GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-- 137 (311)
Q Consensus 64 ~li~yi~~----G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-- 137 (311)
.+.+.+|| |.-|.+.+.+.++.+.++|+|.|-+.---. +++ -.+.++-.++++.+.+.
T Consensus 20 v~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttG----E~~------------~Ls~~Er~~v~~~~~~~~~ 83 (304)
T 3cpr_A 20 VGVAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTG----ESP------------TTTAAEKLELLKAVREEVG 83 (304)
T ss_dssp EEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTT----TTT------------TSCHHHHHHHHHHHHHHHT
T ss_pred eEEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcccc----Chh------------hCCHHHHHHHHHHHHHHhC
Confidence 44445555 556778999999999999999998741110 111 13445555566655543
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHH
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTD 206 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~e 206 (311)
-++||+.-+-.|... ..-+..+.+.++|+||+++. - ...++..+ |...+...++..+++=.| +.+.+
T Consensus 84 grvpviaGvg~~st~--~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~ 161 (304)
T 3cpr_A 84 DRAKLIAGVGTNNTR--TSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDIPGRSGIPIESD 161 (304)
T ss_dssp TTSEEEEECCCSCHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHH
T ss_pred CCCcEEecCCCCCHH--HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHH
Confidence 368988876554332 12356778899999999883 1 12244444 455666678877665333 23446
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
-+.++++ -..++.+=. .+| ++ ..+.++++.++.-|+.|.. +.+-..+..|+||+|-|++=
T Consensus 162 ~~~~La~-~pnIvgiKd---ssg-------d~-~~~~~~~~~~~f~v~~G~d----~~~l~~l~~G~~G~is~~an 221 (304)
T 3cpr_A 162 TMRRLSE-LPTILAVXD---AKG-------DL-VAATSLIKETGLAWYSGDD----PLNLVWLALGGSGFISVIGH 221 (304)
T ss_dssp HHHHHTT-STTEEEEEE---CSC-------CH-HHHHHHHHHHCCEEEECSG----GGHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHc-CCCEEEEec---CCC-------CH-HHHHHHHHhcCEEEEECcH----HHHHHHHHCCCCEEEecHHH
Confidence 5656654 244443311 111 11 2344443322566666653 34556667899999999773
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00056 Score=60.92 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
++..++++.+.. -++++++|.|| -...| .+.++++++..+.||++..-+.++-.+ .
T Consensus 11 ~~al~l~~~l~~-~v~~~KvG~~l----------------~~~~G------~~~v~~L~~~~g~~VflDlK~~DIpnT-v 66 (215)
T 3ve9_A 11 PIPEETLRKLNG-KVAGIKVGWPL----------------LLNLG------KEKVKELVGLVDGIKILDLKLADIDNT-M 66 (215)
T ss_dssp CCCHHHHHHHHT-TSSEEEEEHHH----------------HHHHC------HHHHHHHHTTCCSEEEEEEEECSCHHH-H
T ss_pred HHHHHHHHHhCC-cCcEEEecHHH----------------HHhhC------HHHHHHHHHhcCCcEEEEecccCchhH-H
Confidence 667888888864 58999999666 11223 346777776458899998755544322 1
Q ss_pred HHHHHHHHHcCCcEEEecCCCh-hh-HHHHHHHHHHcCCCeEEEeCCCCh------HHHHHHHHHhCCceEEEEecCCcc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPL-EE-TESLQKEAMKNKIELVLFTTPTTP------TDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~-ee-~~~~~~~~~~~gi~~I~lisp~t~------~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
...++.+.+. +|.+.++-..- .+ ...+ ++|-.++.+.+-+.+ .++..+.++.. |..-+|.
T Consensus 67 ~~a~~~~~~~-ad~vTvh~~~G~~~~~~~~-----~~~~~v~vLts~s~~~~~~~~v~~~a~~a~~~-G~~GvV~----- 134 (215)
T 3ve9_A 67 ILIVDELKDI-TNSFIAHAFVGVEGSLASL-----SQRVDLFLVLSMSHPGWNDAFYPYLREVARRV-NPKGFVA----- 134 (215)
T ss_dssp HHHHHHHTTT-CSEEEEEGGGCTTTTHHHH-----HHHSEEEEECCCSSTTCCGGGHHHHHHHHHHH-CCSEEEC-----
T ss_pred HHHHHHHHHh-hheEEEeCCCCcHHHHHhH-----hcCCCEEEEEecCCcchHHHHHHHHHHHHHHc-CCCceee-----
Confidence 3355667778 99999864332 22 2222 123233333332211 12333333322 2221121
Q ss_pred CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHH--HHHHHHHcCCcEEEEhhHhhch
Q 021527 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPE--HVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e--~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+. ..+ +.++++|+.++-.+++-.||+ ++ +..++.+.|+|-+|||..|.+.
T Consensus 135 sa---t~~---~e~~~ir~~~~~f~~v~pGI~-~~g~~~~~a~~~Gad~iVvGr~I~~a 186 (215)
T 3ve9_A 135 PA---TRP---SMISRVKGDFPDKLVISPGVG-TQGAKPGIALCHGADYEIVGRSVYQS 186 (215)
T ss_dssp CT---TSH---HHHHHHHHHCTTSEEEECCTT-STTCCTTHHHHTTCSEEEECHHHHTS
T ss_pred CC---CCH---HHHHHHHHhCCCcEEEcCCCC-cCcCCHHHHHHcCCCEEEeCHHHcCC
Confidence 11 111 357788886633788888997 35 6778888999999999999983
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0012 Score=63.29 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=86.2
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe---CCCChHHHHHHHHHh
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT---TPTTPTDRMKAIVEA 214 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li---sp~t~~eri~~i~~~ 214 (311)
+++||+.- +...-...++...+.++|.=|+|-..+++|+..+....+++.+--.+... .+. ..++++.+.+.
T Consensus 45 l~~Pii~a----pM~~vs~~~lA~avA~aGGlg~i~~~~s~e~~~~~i~~vk~~~~l~vga~vg~~~~-~~~~~~~liea 119 (366)
T 4fo4_A 45 LNIPMVSA----SMDTVTEARLAIALAQEGGIGFIHKNMSIEQQAAQVHQVKISGGLRVGAAVGAAPG-NEERVKALVEA 119 (366)
T ss_dssp ESSSEEEC----CCTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHTTTSCCCEEECCSCTT-CHHHHHHHHHT
T ss_pred cCCCEEeC----CCCCCChHHHHHHHHHcCCceEeecCCCHHHHHHHHHHHHhcCceeEEEEeccChh-HHHHHHHHHhC
Confidence 57887663 23222335778788888888888778888887777777777542122221 222 25777777665
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.-.++.+-+..| .++...+.++++|+.. ++||++|. +.|+++++++.++|||+++||
T Consensus 120 Gvd~I~idta~G-------~~~~~~~~I~~ik~~~p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 120 GVDVLLIDSSHG-------HSEGVLQRIRETRAAYPHLEIIGGN-VATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp TCSEEEEECSCT-------TSHHHHHHHHHHHHHCTTCEEEEEE-ECSHHHHHHHHHHTCSEEEEC
T ss_pred CCCEEEEeCCCC-------CCHHHHHHHHHHHHhcCCCceEeee-eCCHHHHHHHHHcCCCEEEEe
Confidence 444443322211 2345667889998876 78887754 567999999999999999995
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00065 Score=70.30 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEc--C---------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCc
Q 021527 77 STTAEALKLLDSCGSDIIELG--V---------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCP 141 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG--~---------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iP 141 (311)
+.+.+.++.+.++|.|+|||- . |.++---| |--+.+- .+-.+++++.+|+.+ +.|
T Consensus 149 ~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR----------~r~~~eiv~avr~~vg~~~p 218 (729)
T 1o94_A 149 QFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENR----------ARFWLETLEKVKHAVGSDCA 218 (729)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHH----------THHHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHH----------hHHHHHHHHHHHHHhCCCce
Confidence 578889999999999999993 2 44332233 1112211 123467888888876 788
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
|.+-.-.+..+. -.| +. .++..++.+.+.+ +++.+-+..-... + ....
T Consensus 219 v~vrls~~~~~~--------------~~G-----~~~~~~~~~~~~~l~~-~~d~~~v~~g~~~-~----~~~~------ 267 (729)
T 1o94_A 219 IATRFGVDTVYG--------------PGQ-----IEAEVDGQKFVEMADS-LVDMWDITIGDIA-E----WGED------ 267 (729)
T ss_dssp EEEEEEEECSSC--------------TTS-----CCTTTHHHHHHHHHGG-GCSEEEEEECCST-T----GGGT------
T ss_pred EEEEEccccCcC--------------CCC-----CCchHHHHHHHHHHHh-hcCEEEEeeeccc-c----cccc------
Confidence 887532111100 001 11 2344455555554 4554433221110 0 0000
Q ss_pred EEecCCccCCCCCCCch-HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGH-VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~-~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
+......++. ..++++++|+.+++||++.+||++++++.++++.| ||+|-+|.+++.
T Consensus 268 -------~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~ 326 (729)
T 1o94_A 268 -------AGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA 326 (729)
T ss_dssp -------SCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHH
T ss_pred -------cCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhc
Confidence 0000000111 24678899999999999999999999999999988 999999998764
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0011 Score=59.12 Aligned_cols=169 Identities=15% Similarity=0.175 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC-cEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC-PIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i-Piilm~Y~n~i~~~g~ 156 (311)
+..++++.+.. .++++++|.|| + ...| .+.++++++..+. +|++..-+.++-.+ .
T Consensus 14 ~al~l~~~l~~-~v~~~KvG~~l---------~-------~~~G------~~~v~~L~~~~~~~~VflDlK~~DI~nT-v 69 (222)
T 4dbe_A 14 LSYQVLKEMEN-ELYGIKVGLPL---------V-------LDLG------VDKTRELLIGLDVEEIIVDFKLADIGYI-M 69 (222)
T ss_dssp CCHHHHHHHGG-GCSEEEEEHHH---------H-------HHHC------HHHHHHHHHTCCCSEEEEEEEECSCHHH-H
T ss_pred HHHHHHHHhCC-cCcEEEECHHH---------H-------HhhC------HHHHHHHHHhcCCCeEEEEeeecchHHH-H
Confidence 77788888765 49999999766 1 1123 3466666654477 88887655444222 1
Q ss_pred HHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEeCCCChH------HHHHHHHHhCCceEEEEecCCcc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFTTPTTPT------DRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~lisp~t~~------eri~~i~~~a~gfiY~vs~~G~T 228 (311)
..+++.+.+. |.+.++-.. .+-...+.+.++++|..+..+.+-+.+. ++..+.++.. |...+|.
T Consensus 70 ~~~~~~~~~~--d~vTVh~~~G~~~~~~~a~~~~~~~~~~v~vLts~s~~~~~~~~~~~~a~~a~~~-g~~GvV~----- 141 (222)
T 4dbe_A 70 KSIVERLSFA--NSFIAHSFIGVKGSLDELKRYLDANSKNLYLVAVMSHEGWSTLFADYIKNVIREI-SPKGIVV----- 141 (222)
T ss_dssp HHHHTTCTTC--SEEEEESTTCTTTTHHHHHHHHHHTTCEEEEEEECSSTTCCCTTHHHHHHHHHHH-CCSEEEE-----
T ss_pred HHHHHHHHhC--CEEEEEcCcCcHHHHHHHHHHHHhcCCcEEEEEeCCCcchHHHHHHHHHHHHHHh-CCCEEEE-----
Confidence 2334444444 888886443 2345567777777775443333322110 2333333322 2222221
Q ss_pred CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHH--HHHHHHHcCCcEEEEhhHhhch
Q 021527 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPE--HVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e--~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+. ..+ +.++.+|+.++-.+++--||+ ++ +..++.+.|+|.+|||-.|++.
T Consensus 142 sa---t~p---~e~~~ir~~~~~~~~vtPGI~-~~g~tp~~a~~~Gad~iVVGR~I~~A 193 (222)
T 4dbe_A 142 GG---TKL---DHITQYRRDFEKMTIVSPGMG-SQGGSYGDAVCAGADYEIIGRSIYNA 193 (222)
T ss_dssp CT---TCH---HHHHHHHHHCTTCEEEECCBS-TTSBCTTHHHHHTCSEEEECHHHHTS
T ss_pred CC---CCH---HHHHHHHHhCCCCEEEcCCcc-cCccCHHHHHHcCCCEEEECHHhcCC
Confidence 11 111 357778876633566766775 23 4556677999999999999983
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00014 Score=64.93 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+.+..+.+.+..-.++++....|... +. ... +.++++++.+++|+++++||++++++..+++.|||+|++|+...
T Consensus 34 ~~~~a~~~~~~Gad~i~v~~~d~~~~---~~-~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l 108 (244)
T 1vzw_A 34 PLEAALAWQRSGAEWLHLVDLDAAFG---TG-DNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAAL 108 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHHHT---SC-CCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCchhhc---CC-ChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchHh
Confidence 33444444443344555544333221 11 223 67999999899999999999999999999999999999999866
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
.
T Consensus 109 ~ 109 (244)
T 1vzw_A 109 E 109 (244)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0016 Score=61.40 Aligned_cols=201 Identities=14% Similarity=0.148 Sum_probs=118.7
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNA 126 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~ 126 (311)
.+.|.++++++++ +..+++=|+ -.++.++++|+|.|=+| |--+-.+ .+. ..+++++
T Consensus 28 ~~~lr~l~~~~~~--i~~~~ayD~------~sA~i~e~aGfdai~vs---------~~~~a~~---~lG~pD~~~vt~~e 87 (318)
T 1zlp_A 28 KTTMHRLIEEHGS--VLMPGVQDA------LSAAVVEKTGFHAAFVS---------GYSVSAA---MLGLPDFGLLTTTE 87 (318)
T ss_dssp CCHHHHHHHHSSS--EEEEEECSH------HHHHHHHHTTCSEEEEC---------HHHHHHH---HHCCCSSSCSCHHH
T ss_pred HHHHHHHHhCCCc--EEEecCCCH------HHHHHHHHcCCCEEEEC---------cHHHhhH---hcCCCCCCCCCHHH
Confidence 3456666666654 334455454 45677788999999997 4222211 121 1268999
Q ss_pred HHHHHHHhhccC-CCcEEEEe---cCcchhccCHHHHHHHHHHcCCcEEEecCC---------------ChhhHHHHHHH
Q 021527 127 ILSMLKEVVPQM-SCPIALFT---YYNPILKRGVDNFMSTVRDIGIRGLVVPDV---------------PLEETESLQKE 187 (311)
Q Consensus 127 ~~~~i~~ir~~~-~iPiilm~---Y~n~i~~~g~~~fi~~~~~aGadGviipDl---------------p~ee~~~~~~~ 187 (311)
.+..++.|.+.+ ++||++.. |-|+. ...+-++.+.++|++||.+=|- |.+|..+-.+.
T Consensus 88 m~~~~~~I~r~~~~~PviaD~d~Gyg~~~---~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~A 164 (318)
T 1zlp_A 88 VVEATRRITAAAPNLCVVVDGDTGGGGPL---NVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAA 164 (318)
T ss_dssp HHHHHHHHHHHSSSSEEEEECTTCSSSHH---HHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCEEEeCCCCCCCHH---HHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHH
Confidence 999999998877 99999984 43321 1234566777899999999653 23343322233
Q ss_pred HHHcC--CCeEEEe-CCCCh-------HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--
Q 021527 188 AMKNK--IELVLFT-TPTTP-------TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV-- 255 (311)
Q Consensus 188 ~~~~g--i~~I~li-sp~t~-------~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v-- 255 (311)
+++.. -+.++.. +.... .+|.+.+.+..-..+|+.. + + + .+.++++.+..++|+++
T Consensus 165 a~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~---~-------~-~-~e~~~~i~~~l~~P~lan~ 232 (318)
T 1zlp_A 165 AREAIGDSDFFLVARTDARAPHGLEEGIRRANLYKEAGADATFVEA---P-------A-N-VDELKEVSAKTKGLRIANM 232 (318)
T ss_dssp HHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECC---C-------C-S-HHHHHHHHHHSCSEEEEEE
T ss_pred HHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcC---C-------C-C-HHHHHHHHHhcCCCEEEEe
Confidence 33322 1222222 11111 2455555554444555532 1 1 1 25677777777899854
Q ss_pred -eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 256 -GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 256 -GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.||-+..-+++++.++|..-|+.|.++.+..
T Consensus 233 ~~~g~~~~~~~~eL~~lGv~~v~~~~~~~raa 264 (318)
T 1zlp_A 233 IEGGKTPLHTPEEFKEMGFHLIAHSLTAVYAT 264 (318)
T ss_dssp CTTSSSCCCCHHHHHHHTCCEEEECSHHHHHH
T ss_pred ccCCCCCCCCHHHHHHcCCeEEEEchHHHHHH
Confidence 3443222246788889999999999888644
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.015 Score=52.18 Aligned_cols=191 Identities=19% Similarity=0.241 Sum_probs=105.3
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcC-CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe-c
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGV-PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT-Y 147 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~-PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~-Y 147 (311)
.+|--+. +.++. .++|+|++=+-+ |-| | +-++.+ .+++|.+....|+.+-+ .
T Consensus 25 ICGit~~----ed~~a-~~~gaD~iGfIf~~~S-p----------------R~V~~~----~A~~i~~~~~~~~~~v~v~ 78 (228)
T 4aaj_A 25 ICGIKSL----EELEI-VEKHADATGVVVNSNS-K----------------RRIPLE----KAREIIENSAIPVFLVSTM 78 (228)
T ss_dssp ECCCCSH----HHHHH-HHTTCSEEEEECSSSS-T----------------TBCCHH----HHHHHHHHCSSCEEEEECC
T ss_pred ECCCCcH----HHHHH-HHcCCCEEEEEecCCC-C----------------CCCCHH----HHHHHHHhhCCCCEEEecc
Confidence 5666554 44543 468999986544 222 2 113333 33444444445544332 2
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCC----ChHHHH----HHHHHhCCce
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPT----TPTDRM----KAIVEASEGF 218 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~----t~~eri----~~i~~~a~gf 218 (311)
.| .++..+.+.+.+.|.+=+. |.+++.+..+++ +.|+..+--+... .+.+.. ..+....-.+
T Consensus 79 v~------~~ei~~~i~~~~ld~vQLHG~E~~~~~~~l~~---~~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~ 149 (228)
T 4aaj_A 79 VG------FSEWAMAIERTGAQYIQVHSNALPQTIDTLKK---EFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADM 149 (228)
T ss_dssp CC------HHHHHHHHHHHTCSEEEECSCCCHHHHHHHHH---HHCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSE
T ss_pred Cc------hHHHHHHHHhccchheecccccCHHHHHHHhh---ccCceEEEEEEecccccchhhhHHHHHHHHhccCCCE
Confidence 22 4556667788899988775 666565555543 4477665433221 122222 1221212222
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhhhcCCchhHHH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVKLLGEAQSPEEGLK 297 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~~~~~~~~~~~ 297 (311)
++....|.||.. ++.+ +++.+.. +.|++..+|++ ||||.++++ .+.+||=|=|.+... + ....+
T Consensus 150 -~LlDs~GGtG~~--fDW~---~~~~~~~--~~p~iLAGGL~-peNV~~Ai~~~~P~gVDVsSGVEs~-G-----~KD~~ 214 (228)
T 4aaj_A 150 -VLLDTGAGSGKL--HDLR---VSSLVAR--KIPVIVAGGLN-AENVEEVIKVVKPYGVDVSSGVEKY-G-----IKDPK 214 (228)
T ss_dssp -EEEEC---------CCCH---HHHHHHH--HSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGGEET-T-----EECHH
T ss_pred -EccCCCCCCcCc--CChH---HHHHhhh--cCCeEEECCCC-HHHHHHHHHHhCCCEEEeCCCCCCC-C-----CcCHH
Confidence 234445777753 4553 3444433 47999999996 899988765 689999999988741 1 23468
Q ss_pred HHHHHHHHHHhhC
Q 021527 298 ELEKFAKSLKSAL 310 (311)
Q Consensus 298 ~~~~~~~~l~~~~ 310 (311)
++++|++.+|..+
T Consensus 215 KI~~Fi~~vr~v~ 227 (228)
T 4aaj_A 215 LVEEFVRRAKNVV 227 (228)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccc
Confidence 8999999998764
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.024 Score=53.03 Aligned_cols=201 Identities=15% Similarity=0.126 Sum_probs=116.2
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNA 126 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~ 126 (311)
.+.|.++..++.. .+..+++=|+ -.++.++++|+|.|=++ |--+-.+ .+. ..+++++
T Consensus 13 a~~lr~ll~~~~~-~i~~~~a~D~------~sA~l~e~aGf~ai~vs---------G~~~a~s---~~G~pD~~~vt~~e 73 (307)
T 3lye_A 13 AKKLRHLLENTDE-LIVCPGVYDG------LSARTAMELGFKSLYMT---------GAGTTAS---RLGQPDLAIAQLHD 73 (307)
T ss_dssp HHHHHHHHHHCCC-CEEEEEECSH------HHHHHHHHTTCSCEEEC---------HHHHHHH---HHCCCSSSCSCHHH
T ss_pred HHHHHHHHhCCCC-eEEEecCcCH------HHHHHHHHcCCCEEEec---------cHHHHHH---hcCCCCCCCCCHHH
Confidence 4556555444322 3334444444 45667788999999994 3222111 121 1268899
Q ss_pred HHHHHHHhhccC--CCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC---------------ChhhH-HHHH
Q 021527 127 ILSMLKEVVPQM--SCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV---------------PLEET-ESLQ 185 (311)
Q Consensus 127 ~~~~i~~ir~~~--~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl---------------p~ee~-~~~~ 185 (311)
.+..++.|.... ++||++. +|.|+. ...+-++.+.++|++||.+=|- |.+|. .+++
T Consensus 74 m~~~~~~i~r~~~~~~PviaD~d~Gyg~~~---~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~ 150 (307)
T 3lye_A 74 MRDNADMIANLDPFGPPLIADMDTGYGGPI---MVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIR 150 (307)
T ss_dssp HHHHHHHHHTSSTTSCCEEEECTTCSSSHH---HHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCcEEEECCCCCCCHH---HHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHH
Confidence 999999998754 5999987 455532 2345677888999999999663 33442 2332
Q ss_pred HHH---HHcCCCeEEEeCCCC--------hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcE
Q 021527 186 KEA---MKNKIELVLFTTPTT--------PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPV 253 (311)
Q Consensus 186 ~~~---~~~gi~~I~lisp~t--------~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv 253 (311)
... +..|.+.++..=-.. ..+|.+.+.+..-..+|+.. .+ + .+.++++.+.. ++|+
T Consensus 151 Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~---~~------~---~~~~~~i~~~~~~~Pv 218 (307)
T 3lye_A 151 AAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEG---FR------S---KEQAAAAVAALAPWPL 218 (307)
T ss_dssp HHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECC---CS------C---HHHHHHHHHHHTTSCB
T ss_pred HHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecC---CC------C---HHHHHHHHHHccCCce
Confidence 222 223666555432111 13666666665556666642 21 1 13455555543 4777
Q ss_pred EE---eeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 254 AV---GFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 254 ~v---GfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+ .+|-...-.++++.++|..-|+.+..+.+.
T Consensus 219 ~~n~~~~g~~p~~t~~eL~~lGv~~v~~~~~~~ra 253 (307)
T 3lye_A 219 LLNSVENGHSPLITVEEAKAMGFRIMIFSFATLAP 253 (307)
T ss_dssp EEEEETTSSSCCCCHHHHHHHTCSEEEEETTTHHH
T ss_pred eEEeecCCCCCCCCHHHHHHcCCeEEEEChHHHHH
Confidence 54 344221123567888999999999877763
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00073 Score=62.98 Aligned_cols=160 Identities=16% Similarity=0.249 Sum_probs=98.6
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILK 153 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~ 153 (311)
-+.+..++.++.+.+.|||+|-+|...+.|-++.-..+.- ++.+...|+.+++. ++||-+.+|-
T Consensus 43 ~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE----------~~Rv~pvi~~l~~~-~vpiSIDT~~----- 106 (294)
T 2y5s_A 43 LARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEE----------LARVIPLVEALRPL-NVPLSIDTYK----- 106 (294)
T ss_dssp -CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHH----------HHHHHHHHHHHGGG-CSCEEEECCC-----
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHH----------HHHHHHHHHHHhhC-CCeEEEECCC-----
Confidence 3568899999999999999999999776664432111111 23446678888766 8999999873
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC---CCCh-----------HHHHHHHHH---h--
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT---PTTP-----------TDRMKAIVE---A-- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis---p~t~-----------~eri~~i~~---~-- 214 (311)
.+-++.+.++|++- |.|+.-+...++.+.++++|...|.+-. |.+. .++...+.+ .
T Consensus 107 ---~~Va~aAl~aGa~i--INdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~ 181 (294)
T 2y5s_A 107 ---PAVMRAALAAGADL--INDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALR 181 (294)
T ss_dssp ---HHHHHHHHHHTCSE--EEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCE--EEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHH
Confidence 34567788889874 5555433333567788999988777643 4432 222221111 1
Q ss_pred CCc----eEEEEecCCccCCCCCCCchHHHHHHHHhhc-------CCCcEEEee
Q 021527 215 SEG----FVYLVSSIGVTGARASISGHVQTLLREIKES-------STKPVAVGF 257 (311)
Q Consensus 215 a~g----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-------~~~Pv~vGf 257 (311)
..| -|++-...|. |. .......++++++++. .+.|+++|-
T Consensus 182 ~~Gi~~~~IilDPG~Gf-~k--t~~~~n~~ll~~l~~l~~~~~~~~g~Pvl~G~ 232 (294)
T 2y5s_A 182 DAGVAAERICVDPGFGF-GK--AVVDDNYALLAALPDTAPARPDGRAYPILAGM 232 (294)
T ss_dssp HTTCCGGGEEEECCTTS-SS--CTTHHHHHHHHTGGGGSCBCTTSSBCCBEEEC
T ss_pred HcCCChhhEEEeCCCcc-cc--cchHHHHHHHHHHHHHHhccccCCCCCEEEEe
Confidence 233 3666665553 22 1213345677776653 368998864
|
| >3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00096 Score=65.44 Aligned_cols=107 Identities=20% Similarity=0.186 Sum_probs=72.2
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc---c--CCCcEEEEecC
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP---Q--MSCPIALFTYY 148 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~---~--~~iPiilm~Y~ 148 (311)
-+.+..++.++.+.+.|||+|-+|...+-|-++....+.- ++.+...|+.+++ + +++||-+.+|-
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE----------~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~ 278 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEE----------FNKLNEFLEYFKSQLANLIYKPLVSIDTRK 278 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHH----------HHHHHHHHHHHHHHTTTCSSCCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHhhccccCCCCeEEEeCCC
Confidence 4567899999999999999999999887774432111111 1234556778876 4 48999999873
Q ss_pred cchhccCHHHHHHHHHH--cCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe
Q 021527 149 NPILKRGVDNFMSTVRD--IGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 199 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~--aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li 199 (311)
.+-++.+.+ +|++- .|.|+.-+...++.+.++++|...|.+-
T Consensus 279 --------~~VaeaAL~~~aGa~i-~INDVsg~~d~~m~~v~a~~g~~vVlMh 322 (442)
T 3mcm_A 279 --------LEVMQKILAKHHDIIW-MINDVECNNIEQKAQLIAKYNKKYVIIH 322 (442)
T ss_dssp --------HHHHHHHHHHHGGGCC-EEEECCCTTHHHHHHHHHHHTCEEEEEC
T ss_pred --------HHHHHHHHhhCCCCCE-EEEcCCCCCChHHHHHHHHhCCeEEEEC
Confidence 245666776 88863 1556544444567888899998777653
|
| >2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.014 Score=53.32 Aligned_cols=195 Identities=18% Similarity=0.290 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
+++.+++ +.|++.+-.|+..+.| +.++.+...|+|++-++...+ | .+- +++
T Consensus 7 n~~k~~l----~~g~~~~g~~~~~~~p------~~~e~a~~~GaD~v~lDlE~~-~-~~~-----------------~~~ 57 (267)
T 2vws_A 7 NPFKERL----RKGEVQIGLWLSSTTA------YMAEIAATSGYDWLLIDGEHA-P-NTI-----------------QDL 57 (267)
T ss_dssp CHHHHHH----HTTCCEEEEEECSCCH------HHHHHHHTTCCSEEEEETTTS-C-CCH-----------------HHH
T ss_pred HHHHHHH----HCCCCEEEEEEeCCCH------HHHHHHHhCCCCEEEEcCCCC-C-CCH-----------------HHH
Confidence 4444444 3566667677776655 677788889999999985442 1 111 122
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHH----------------
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMK---------------- 190 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~---------------- 190 (311)
.+.+..+.. ...|+++-.-.+ . ...++.+.+.|++||++|-.- .||..++.+.++.
T Consensus 58 ~~~~~a~~~-~~~~~~VRv~~~-----~-~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~~~~~p~G~Rg~~~~~~~~~ 130 (267)
T 2vws_A 58 YHQLQAVAP-YASQPVIRPVEG-----S-KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAA 130 (267)
T ss_dssp HHHHHHHTT-SSSEEEEECSSC-----C-HHHHHHHHHTTCCEEEECCCCSHHHHHHHHHHTSCTTTSCCCSCGGGSGGG
T ss_pred HHHHHHHHh-CCCcEEEEeCCC-----C-HHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHHHcCCCCCccccccchhhhh
Confidence 234444432 356777765322 1 356788889999999999664 3556656555421
Q ss_pred -c------------CCCeEEEeCCCChH--HHHHHHHHhC-CceEEEE-----ecCCccCCCCCCCchHHHHHHHHhhc-
Q 021527 191 -N------------KIELVLFTTPTTPT--DRMKAIVEAS-EGFVYLV-----SSIGVTGARASISGHVQTLLREIKES- 248 (311)
Q Consensus 191 -~------------gi~~I~lisp~t~~--eri~~i~~~a-~gfiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~- 248 (311)
+ .+.++.++ .|+. +.+.+|++.. -.++++. ...|..+. ...+.+...++++-..
T Consensus 131 ~~g~~~~y~~~~~~~~~v~~~I--Et~~av~~~~eIa~~~gvd~l~iG~~DL~~~lg~~~~--~~~p~v~~a~~~iv~aa 206 (267)
T 2vws_A 131 RWGRIENYMAQVNDSLCLLVQV--ESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDN--AGHPEVQRIIETSIRRI 206 (267)
T ss_dssp GGGTSTTHHHHHHHHCEEEEEC--CSHHHHHTHHHHHTSTTCCEEEECHHHHHHHTTCSSS--CCTHHHHHHHHHHHHHH
T ss_pred hcCcchhhhhhcccccEEEEEE--CCHHHHHHHHHHhCCCCCCEEEEChHHHHHHhCCCCC--CCCHHHHHHHHHHHHHH
Confidence 0 13444444 4543 5677776431 2455553 13444332 2245565556655332
Q ss_pred --CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 249 --STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 249 --~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.++|+.+ + ..+++.+....+.|++-+.+|+-..-
T Consensus 207 ~aaG~~~~v-~-~~d~~~a~~~~~~G~~~~s~~~d~~~ 242 (267)
T 2vws_A 207 RAAGKAAGF-L-AVAPDMAQQCLAWGANFVAVGVDTML 242 (267)
T ss_dssp HHTTCEEEE-E-CSSHHHHHHHHHTTCCEEEEEEHHHH
T ss_pred HHhCCeEEE-e-cCCHHHHHHHHHCCCCEEEEchHHHH
Confidence 3677655 2 35899999999999999999975443
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0058 Score=56.78 Aligned_cols=200 Identities=17% Similarity=0.200 Sum_probs=117.4
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH--cCCCHHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA--RGTNFNAIL 128 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~--~G~~~~~~~ 128 (311)
.+.|.++++++++ +..+++=|+ -.++.++++|+|.|=+| |--+..+ ..+. ..+++++.+
T Consensus 4 ~~~lr~l~~~~~~--i~~~~a~D~------~sA~~~~~aG~~ai~vs---------~~~~a~~--~G~pD~~~vt~~em~ 64 (290)
T 2hjp_A 4 NQALRAALDSGRL--FTAMAAHNP------LVAKLAEQAGFGGIWGS---------GFELSAS--YAVPDANILSMSTHL 64 (290)
T ss_dssp HHHHHHHHHHCCC--EEEEECSSH------HHHHHHHHHTCSEEEEC---------HHHHHHH--TTSCTTTCSCHHHHH
T ss_pred HHHHHHHHhCCCc--EEEecCCCH------HHHHHHHHcCCCEEEEC---------hHHHHHh--CCCCCCCCCCHHHHH
Confidence 3467777766654 334555554 45667778999999997 3222111 1111 126899999
Q ss_pred HHHHHhhccCCCcEEEEe---cCcchhccCHHHHHHHHHHcCCcEEEecCC-----------------ChhhHHHHHHHH
Q 021527 129 SMLKEVVPQMSCPIALFT---YYNPILKRGVDNFMSTVRDIGIRGLVVPDV-----------------PLEETESLQKEA 188 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~---Y~n~i~~~g~~~fi~~~~~aGadGviipDl-----------------p~ee~~~~~~~~ 188 (311)
..++.|.+.+++||++.. |-|+. ...+-++.+.++|++||.+=|- |.+|..+-...+
T Consensus 65 ~~~~~I~~~~~~PviaD~d~Gyg~~~---~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa 141 (290)
T 2hjp_A 65 EMMRAIASTVSIPLIADIDTGFGNAV---NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAA 141 (290)
T ss_dssp HHHHHHHTTCSSCEEEECTTTTSSHH---HHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCHH---HHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHH
Confidence 999999999999988763 33321 1234556777899999998653 223433333333
Q ss_pred HHcCC--CeEEEe-CCCC-----hH---HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC--CcEEE
Q 021527 189 MKNKI--ELVLFT-TPTT-----PT---DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST--KPVAV 255 (311)
Q Consensus 189 ~~~gi--~~I~li-sp~t-----~~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~v 255 (311)
++... +.++.. +... -+ +|.+.+.+..-..+|+.+. + +. .+.++++.+..+ +|+++
T Consensus 142 ~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~--~-------~~--~~~~~~i~~~~~~~vP~i~ 210 (290)
T 2hjp_A 142 TAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSR--Q-------KT--PDEILAFVKSWPGKVPLVL 210 (290)
T ss_dssp HHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCC--C-------SS--SHHHHHHHHHCCCSSCEEE
T ss_pred HHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeCCC--C-------CC--HHHHHHHHHHcCCCCCEEE
Confidence 33322 222221 2211 12 4555555544444555320 1 11 134667766666 89987
Q ss_pred ee---CCCCHHHHHHHHHcC-CcEEEEhhHhhchh
Q 021527 256 GF---GISKPEHVQQVAGWG-ADGVIVGSAMVKLL 286 (311)
Q Consensus 256 Gf---GIst~e~v~~v~~~G-ADGvIVGSaiv~~~ 286 (311)
.- ..- .++++.++| ..-|+.|..+.+..
T Consensus 211 n~~~~~~~---~~~eL~~lG~v~~v~~~~~~~raa 242 (290)
T 2hjp_A 211 VPTAYPQL---TEADIAALSKVGIVIYGNHAIRAA 242 (290)
T ss_dssp CGGGCTTS---CHHHHHTCTTEEEEEECSHHHHHH
T ss_pred eccCCCCC---CHHHHHhcCCeeEEEechHHHHHH
Confidence 52 122 357888899 99999999888644
|
| >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.022 Score=53.11 Aligned_cols=220 Identities=12% Similarity=0.155 Sum_probs=136.5
Q ss_pred cCCccEEE-EEeCCCCCh-hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc
Q 021527 60 QGKVALIP-YITAGDPDL-STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ 137 (311)
Q Consensus 60 ~~~~~li~-yi~~G~P~~-~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~ 137 (311)
+|+..+.. |+.|=.++. +.+.+.++.|...+.|.|-+- +.+| |.+-...++++..++++
T Consensus 20 ~~~~~~S~E~fPPk~~~~~~~l~~~~~~l~~l~p~fvsVT------~gag-------------g~~r~~t~~~a~~i~~~ 80 (304)
T 3fst_A 20 QGQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVT------YGAN-------------SGERDRTHSIIKGIKDR 80 (304)
T ss_dssp TTCCEEEEEECCCCSHHHHHHHHHHHHHHHTTCCSEEEEC------CCTT-------------SSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEcCCCCccHHHHHHHHHHHHhcCCCCEEEEe------eCCC-------------CcchhHHHHHHHHHHHH
Confidence 34554444 444444444 336678999999999997773 2233 22223445677788777
Q ss_pred CCCcEEE-EecCcchhccCHHHHHHHHHHcCCcEEEe--cCCCh------hhHHHHHHHHHHcC-CCeEEEeC----CCC
Q 021527 138 MSCPIAL-FTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPL------EETESLQKEAMKNK-IELVLFTT----PTT 203 (311)
Q Consensus 138 ~~iPiil-m~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~------ee~~~~~~~~~~~g-i~~I~lis----p~t 203 (311)
.+++.+. ++..+ .-+..++..+..+.+.|++.++. .|.|- ..+.++.+.+++.+ +..-.-.. |..
T Consensus 81 ~g~~~v~Hltc~~-~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yPE~Hp~a 159 (304)
T 3fst_A 81 TGLEAAPHLTCID-ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEA 159 (304)
T ss_dssp HCCCEEEEEESTT-SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECTTCCTTC
T ss_pred hCCCeeEEeecCC-CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCcCCCC
Confidence 6776554 33332 23345677888899999998886 46553 23667777777643 33222222 333
Q ss_pred h--HHHHHHHH-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEee-CCCCHHHHHHHHHcCCcEEE
Q 021527 204 P--TDRMKAIV-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGF-GISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 204 ~--~eri~~i~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGf-GIst~e~v~~v~~~GADGvI 277 (311)
+ +..+..+. +...|..|++|-. -.+ ..+.++++++|+. .++||+.|. .|.|..++..+.++ -|+-
T Consensus 160 ~~~~~d~~~Lk~KvdAGAdf~iTQ~-------ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~--~Gv~ 230 (304)
T 3fst_A 160 KSAQADLLNLKRKVDAGANRAITQF-------FFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADM--TNVR 230 (304)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECC-------CSCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHHHHH--HTCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCc-------cCCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHHHHc--CCCc
Confidence 2 12222222 2234555665422 223 4467889999876 589999995 69999999998765 5888
Q ss_pred EhhHhhchhhhcCC-c----hhHHHHHHHHHHHHHh
Q 021527 278 VGSAMVKLLGEAQS-P----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 278 VGSaiv~~~~~~~~-~----~~~~~~~~~~~~~l~~ 308 (311)
|=..+.+.++...+ + +.+++-..+++++|++
T Consensus 231 iP~~l~~~l~~~~dd~~~~~~~Gi~~a~e~~~~L~~ 266 (304)
T 3fst_A 231 IPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSR 266 (304)
T ss_dssp CCHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999876443 2 3456777777888765
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0063 Score=57.90 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=98.3
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
....-|.+.+++.++.|.++|+|++-+++|..+ --+.+++|+++.++|++....||
T Consensus 39 nt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~------------------------~a~al~~I~~~~~vPlvaDiHf~ 94 (366)
T 3noy_A 39 STKTHDVEATLNQIKRLYEAGCEIVRVAVPHKE------------------------DVEALEEIVKKSPMPVIADIHFA 94 (366)
T ss_dssp CSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHH------------------------HHHHHHHHHHHCSSCEEEECCSC
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEeCCCChH------------------------HHHHHHHHHhcCCCCEEEeCCCC
Confidence 333456789999999999999999999988511 12477888888999999988777
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--CCC-hhhHHHHHHHHHHcCCCeEEEeC-------------CCChHHHHHHHHH
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--DVP-LEETESLQKEAMKNKIELVLFTT-------------PTTPTDRMKAIVE 213 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--Dlp-~ee~~~~~~~~~~~gi~~I~lis-------------p~t~~eri~~i~~ 213 (311)
-+.+..+.++|+|.+=+. .+. .+...++.+.++++|+.....++ +.+++...+...+
T Consensus 95 -------~~lal~a~e~G~dklRINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~ 167 (366)
T 3noy_A 95 -------PSYAFLSMEKGVHGIRINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALR 167 (366)
T ss_dssp -------HHHHHHHHHTTCSEEEECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHH
T ss_pred -------HHHHHHHHHhCCCeEEECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHH
Confidence 245556899999997763 111 23457799999999987666432 2345443333222
Q ss_pred h-----CCce-EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCC
Q 021527 214 A-----SEGF-VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGI 259 (311)
Q Consensus 214 ~-----a~gf-iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGI 259 (311)
. ..|| -+++|... +......+-.+.+.+.++-|+-.|.+=
T Consensus 168 ~~~~~e~~gf~~iviS~K~------S~v~~~i~ayr~la~~~dyPLHlGvTE 213 (366)
T 3noy_A 168 WSEKFEKWGFTNYKVSIKG------SDVLQNVRANLIFAERTDVPLHIGITE 213 (366)
T ss_dssp HHHHHHHTTCCCEEEEEEC------SSHHHHHHHHHHHHHHCCCCEEECCSS
T ss_pred HHHHHHhCCCCeEEEeeec------CChHHHHHHHHHHHhccCCCEEEccCC
Confidence 2 3466 34455431 111112223344555578999766544
|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0022 Score=64.78 Aligned_cols=174 Identities=12% Similarity=0.093 Sum_probs=101.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|||+|-+| |-..++ |. .+++-+.+..|++..++|+.+.+|-
T Consensus 338 ~~~~a~~~A~~~v~~GAdiIDIg-pg~~~v-~~----------------~ee~~rvv~~i~~~~~vpisIDT~~------ 393 (566)
T 1q7z_A 338 NEEIVIKEAKTQVEKGAEVLDVN-FGIESQ-ID----------------VRYVEKIVQTLPYVSNVPLSLDIQN------ 393 (566)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEE-CSSGGG-SC----------------HHHHHHHHHHHHHHTCSCEEEECCC------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEC-CCCCCC-CH----------------HHHHHHHHHHHHhhCCceEEEeCCC------
Confidence 45788899999999999999999 443332 21 1233345556666679999999872
Q ss_pred CHHHHHHHHHHc--CCcEEEecCCChhhH--HHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHH-----hCCce---
Q 021527 155 GVDNFMSTVRDI--GIRGLVVPDVPLEET--ESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVE-----ASEGF--- 218 (311)
Q Consensus 155 g~~~fi~~~~~a--GadGviipDlp~ee~--~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~-----~a~gf--- 218 (311)
.+-++.+.++ |++- +.|+..++. .++.+.++++|...|.+- .|.|-+++++...+ ...|+
T Consensus 394 --~~v~eaal~~~~G~~i--INdis~~~~~~~~~~~~~~~~g~~vV~m~~~~~~p~t~~~~~~~l~~~~~~a~~~Gi~~~ 469 (566)
T 1q7z_A 394 --VDLTERALRAYPGRSL--FNSAKVDEEELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHDFSDR 469 (566)
T ss_dssp --HHHHHHHHHHCSSCCE--EEEEESCHHHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred --HHHHHHHHHhcCCCCE--EEECCcchhhHHHHHHHHHHhCCeEEEEeCCCCCcCCHHHHHHHHHHHHHHHHHCCCCCc
Confidence 2456667777 8873 566444332 567888999998777664 23343333321111 13565
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeC-----CCCHHHH-----HHHHHcCCcEEEE
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFG-----ISKPEHV-----QQVAGWGADGVIV 278 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfG-----Ist~e~v-----~~v~~~GADGvIV 278 (311)
|++-.....-|... .+-.+.+.++++|+. +.|+++|-+ ....+-+ ......|+|.++|
T Consensus 470 IilDPg~~~igfgk-~~~~~l~~~~~~~~~-g~p~l~G~Snksf~~~~~~~l~~t~a~~a~~~G~~i~rv 537 (566)
T 1q7z_A 470 VIFDPGVLPLGAEG-KPVEVLKTIEFISSK-GFNTTVGLSNLSFGLPDRSYYNTAFLVLGISKGLSSAIM 537 (566)
T ss_dssp EEEECCCCCTTTTC-CHHHHHHHHHHHHHT-TCEECCBGGGGSTTSTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCCcccCcH-HHHHHHHHHHHHHhC-CCCEEEEeCcccccCCHHHHHHHHHHHHHHHcCCCEEEE
Confidence 67655441113222 222334445555554 889987542 2111211 2234678898877
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0034 Score=60.22 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCC
Q 021527 182 ESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISK 261 (311)
Q Consensus 182 ~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst 261 (311)
.++.+.+++.|+..+..+.+....++.+.+.+....++. +......... ..+....+.+.++++.+++||++ .||.+
T Consensus 145 ~~~i~~~~~~g~~v~~~v~~~~~~e~a~~~~~agad~i~-i~~~~~~~~~-~~~~~~~~~i~~l~~~~~~pvi~-ggi~t 221 (393)
T 2qr6_A 145 SERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLV-IQGTLISAEH-VNTGGEALNLKEFIGSLDVPVIA-GGVND 221 (393)
T ss_dssp HHHHHHHHHTTSCCEEEECTTTHHHHHHHHHHTTCSEEE-EECSSCCSSC-CCC-----CHHHHHHHCSSCEEE-ECCCS
T ss_pred HHHHHHHhhcCCeEEEEeCCccHHHHHHHHHHCCCCEEE-EeCCcccccc-CCCcccHHHHHHHHHhcCCCEEE-CCcCC
Confidence 334555666787766666666555555555443333332 2211110100 00110123377788888999988 57788
Q ss_pred HHHHHHHHHcCCcEEEEhh
Q 021527 262 PEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGS 280 (311)
+++++.+.+.|||+|+||+
T Consensus 222 ~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 222 YTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp HHHHHHHHTTTCSEEEESC
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 9999999999999999986
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0039 Score=56.88 Aligned_cols=177 Identities=14% Similarity=0.123 Sum_probs=102.4
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+-+..|+.++..++++.+.. .++++++|.++= . .. ..+.++++++. +.+|++..-+
T Consensus 32 vALD~~~~~~al~l~~~l~~-~v~~~KvG~~l~---------~-------~~------G~~~v~~Lk~~-g~~VflDlK~ 87 (255)
T 3ldv_A 32 VALDYDNLADALAFVDKIDP-STCRLKVGKEMF---------T-------LF------GPDFVRELHKR-GFSVFLDLKF 87 (255)
T ss_dssp EEECCSSHHHHHHHHTTSCG-GGCEEEEEHHHH---------H-------HH------HHHHHHHHHHT-TCCEEEEEEE
T ss_pred EEcCCCCHHHHHHHHHHhCC-cCcEEEeCHHHH---------H-------hh------CHHHHHHHHhc-CCCEEEEEec
Confidence 45578999999999998854 489999996661 1 11 24567777764 7888887755
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCC---Ce--EEEeCCCChHH------------HHHH
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKI---EL--VLFTTPTTPTD------------RMKA 210 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi---~~--I~lisp~t~~e------------ri~~ 210 (311)
.++-.+ ....++.+.+.|+|.+.+.-.. .+-...+.+.++++|- .. |...+..+.++ ...+
T Consensus 88 ~DIpnT-v~~a~~~~~~~gaD~vTVh~~~G~~~~~~a~~~~~~~g~~~~~li~VtvLTS~s~~~l~~~g~~~~~~~~V~~ 166 (255)
T 3ldv_A 88 HDIPNT-CSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESADLQGIGILSAPQDHVLR 166 (255)
T ss_dssp CSCHHH-HHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHGGGGGGSCEEEEECSCTTCCHHHHHHTTCCSCHHHHHHH
T ss_pred ccchhH-HHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHhhcCCCCceEEEEEEEecCCHHHHHhcCCCCCHHHHHHH
Confidence 444322 2446677889999999986433 2334445555555431 12 22223222211 1122
Q ss_pred HHHhC--CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCH--H--------HHHHHHHcCCcEEE
Q 021527 211 IVEAS--EGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKP--E--------HVQQVAGWGADGVI 277 (311)
Q Consensus 211 i~~~a--~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~--e--------~v~~v~~~GADGvI 277 (311)
+++.+ .|..=+| .++ ..++.+|+.++ -.++|--||+-. + +..++.++|||.+|
T Consensus 167 ~A~~a~~aG~~GvV-----------~sa---~e~~~iR~~~g~~fl~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iV 232 (255)
T 3ldv_A 167 LATLTKNAGLDGVV-----------CSA---QEASLLKQHLGREFKLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLV 232 (255)
T ss_dssp HHHHHHHTTCSEEE-----------CCH---HHHHHHHHHHCTTSEEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEE
T ss_pred HHHHHHHcCCCEEE-----------ECH---HHHHHHHHhcCCCcEEEeCCcccCcCCccceeccCCHHHHHHcCCCEEE
Confidence 22221 1211111 111 24777777653 345564555311 1 25567789999999
Q ss_pred EhhHhhc
Q 021527 278 VGSAMVK 284 (311)
Q Consensus 278 VGSaiv~ 284 (311)
||++|.+
T Consensus 233 vGr~I~~ 239 (255)
T 3ldv_A 233 IGRPITQ 239 (255)
T ss_dssp ECHHHHT
T ss_pred ECHHHhC
Confidence 9999998
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00037 Score=62.18 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+++++ .+++|+++++||++++++.++++.|||+|++|+++..
T Consensus 63 ~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 107 (241)
T 1qo2_A 63 LPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhh
Confidence 46788888 7789999999999999999999999999999999865
|
| >3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.01 Score=54.07 Aligned_cols=192 Identities=11% Similarity=0.158 Sum_probs=112.7
Q ss_pred HHHHHHcCCccEEEEEeC-CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITA-GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~-G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
|++.-++|+..+-.++.. ..| +.++.+..+|+|+|-|+...+= .+- ++..+.+.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p------~~~e~a~~~g~D~vilDlEhav--~~~-----------------~k~~~~l~ 60 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNP------DIVRIYAEAGLDYFIVDCEHAA--YTF-----------------REINHLVS 60 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCT------THHHHHHHTTCSEEEEESSSSC--CCH-----------------HHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCH------HHHHHHhcCCcCEEEEeccCCC--CCH-----------------HHHHHHHH
Confidence 333344677777778877 778 5677778899999999855432 222 12222333
Q ss_pred HhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHH----------------------
Q 021527 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAM---------------------- 189 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~---------------------- 189 (311)
.+.. ...++++-. |.. .. ..++.+.+.|++||++|-.- .|+..++.+.++
T Consensus 61 a~~~-~~~~~~VRV--n~~---~~-~di~~~ld~G~~gI~lP~v~saed~~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~ 133 (261)
T 3qz6_A 61 VAKN-AGVSVLVRI--PQV---DR-AHVQRLLDIGAEGFMIPGVQSAETMRETVRLAKYPPLGERGVGGSIVTDFKPVNW 133 (261)
T ss_dssp HHHH-HTCEEEEEC--SSC---CH-HHHHHHHHHTCCEEEETTCCSHHHHHHHHHHHSCTTTCCCCCCCGGGGTTCCCCH
T ss_pred HHhh-cCCeEEEEe--CCC---CH-HHHHHHHhcCCCEEEECCcCCHHHHHHHHHHhccCCCCCcCcccchhhhccccch
Confidence 3322 234555544 322 12 46888889999999999763 356666666652
Q ss_pred -------HcCCCeEEEeCCCChH--HHHHHHHHh-CCceEEEE-----ecCCccCCCCCCCchHHHHHHHHhhc---CCC
Q 021527 190 -------KNKIELVLFTTPTTPT--DRMKAIVEA-SEGFVYLV-----SSIGVTGARASISGHVQTLLREIKES---STK 251 (311)
Q Consensus 190 -------~~gi~~I~lisp~t~~--eri~~i~~~-a~gfiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~---~~~ 251 (311)
...+.++.++ .|+. +.+.+|++. .-.++++. ...|..+. ...+.+...++++-.. .++
T Consensus 134 ~~y~~~~~~~~~v~~mI--Et~~av~~~~eIaa~~~vd~l~iG~~DL~~~lg~~~~--~~~p~v~~a~~~iv~aa~aaG~ 209 (261)
T 3qz6_A 134 AEWVQERNDEIFIMAQI--EHVKAVEDIDSILAVQGVDAVIFGPRDLSNDLGIIGQ--TEHPKVYECYEKVYRAADRQGV 209 (261)
T ss_dssp HHHHHHHHTTCEEEEEE--CCHHHHHTHHHHHTSTTCCEEEECHHHHHHHTTCTTC--TTCHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhcCCCCeEEEEEE--CCHHHHHHHHHHhCCCCCCEEEECHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHHhCC
Confidence 1123444444 4443 556777642 12344442 12343332 2234555556655332 367
Q ss_pred cEEEeeCCCCHHHH-HHHHHcCCcEEEEhhHhh
Q 021527 252 PVAVGFGISKPEHV-QQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 252 Pv~vGfGIst~e~v-~~v~~~GADGvIVGSaiv 283 (311)
|+.+- ..+++.+ ..+.+.|.+-+.+|+-..
T Consensus 210 ~~g~~--~~~~~~~~~~~~~~G~~~~s~~~D~~ 240 (261)
T 3qz6_A 210 VKGFF--TAADAAKMGWAVERGAQMLLWSGDVA 240 (261)
T ss_dssp EEEEE--ESSCGGGGHHHHHTTCCEEEEEEHHH
T ss_pred CEEEE--eCCHHHHHHHHHHCCCCEEEEhhHHH
Confidence 75332 3468999 899999999999997543
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.1 Score=48.36 Aligned_cols=205 Identities=17% Similarity=0.244 Sum_probs=130.4
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.|+..++.| -++-.|= -.+++...-++++.++.+..+|-=-- .| +.+.-...+.+..
T Consensus 9 ~~~ll~~A~~~~-yAV~AfN---v~n~e~~~avi~AAee~~sPvIlq~s-------~~---------~~~~~~g~~~~~~ 68 (288)
T 3q94_A 9 MKEMLNKALEGK-YAVGQFN---MNNLEWTQAILAAAEEEKSPVILGVS-------EG---------AARHMTGFKTVVA 68 (288)
T ss_dssp SHHHHHHHHHHT-CCEEEEE---CCSHHHHHHHHHHHHHTTCCEEEEEE-------HH---------HHHHTSCHHHHHH
T ss_pred HHHHHHHHHHCC-cEEEEEe---eCCHHHHHHHHHHHHHhCCCEEEECC-------hh---------hhhhcCCHHHHHH
Confidence 367777766654 3454454 34678999999999999998764321 11 1111011223445
Q ss_pred HHHHhhc--cCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE---E
Q 021527 130 MLKEVVP--QMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL---F 198 (311)
Q Consensus 130 ~i~~ir~--~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~---l 198 (311)
+++.+.+ +.++||.|-. -+..-.+.+..+.++|.+.+.+ ..+|+|| ..++.+.++++|+.+=- .
T Consensus 69 ~v~~~A~~~~~~VPValHl-----DHg~~~e~i~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~ 143 (288)
T 3q94_A 69 MVKALIEEMNITVPVAIHL-----DHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGT 143 (288)
T ss_dssp HHHHHHHHTTCCSCEEEEE-----EEECSHHHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESB
T ss_pred HHHHHHHhcCCCCcEEEEC-----CCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 6777767 7899999863 1222246788999999999988 4688887 66788889988873210 0
Q ss_pred eC-----------CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCC
Q 021527 199 TT-----------PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISK 261 (311)
Q Consensus 199 is-----------p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst 261 (311)
+. .-|.++..++..+.. |...+ + +..|.+-....++ .+.|+++++.+++|++. |.|+.
T Consensus 144 vgG~Ed~~~~~~~~yT~Peea~~Fv~~T-gvD~LAvaiGt~HG~Y~~~p~Ld---~~~L~~I~~~v~vpLVlHGgSG~~- 218 (288)
T 3q94_A 144 VGGQEDDVIAEGVIYADPAECKHLVEAT-GIDCLAPALGSVHGPYKGEPNLG---FAEMEQVRDFTGVPLVLHGGTGIP- 218 (288)
T ss_dssp CBCSCSSCGGGGCBCCCHHHHHHHHHHH-CCSEEEECSSCBSSCCSSSCCCC---HHHHHHHHHHHCSCEEECCCTTCC-
T ss_pred eccccCCcCCccccCCCHHHHHHHHHHH-CCCEEEEEcCcccCCcCCCCccC---HHHHHHHHHhcCCCEEEeCCCCCC-
Confidence 10 124345555555432 33333 2 3444332112232 36788898888999876 66775
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhc
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.|++++..+.|.-=+=|+|.+-.
T Consensus 219 ~e~i~~ai~~Gv~KiNi~Tdl~~ 241 (288)
T 3q94_A 219 TADIEKAISLGTSKINVNTENQI 241 (288)
T ss_dssp HHHHHHHHHTTEEEEEECHHHHH
T ss_pred HHHHHHHHHcCCeEEEEChHHHH
Confidence 79999999999888889988754
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0022 Score=60.97 Aligned_cols=130 Identities=17% Similarity=0.221 Sum_probs=77.9
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCCh--HHHHHHHHHhC
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTP--TDRMKAIVEAS 215 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~--~eri~~i~~~a 215 (311)
++.||+.- |....+..++...+.++|.=|++-...++|+....... ....+..+........ .++++.+.+..
T Consensus 56 l~~PIi~A----pM~~~~~~~lA~Ava~~Gglg~i~~~~s~e~~~~~i~~-~p~~l~~v~~~~g~~~~~~~~~~~l~~~~ 130 (351)
T 2c6q_A 56 SGVPIIAA----NMDTVGTFEMAKVLCKFSLFTAVHKHYSLVQWQEFAGQ-NPDCLEHLAASSGTGSSDFEQLEQILEAI 130 (351)
T ss_dssp EECCEEEC----SSTTTSCHHHHHHHHHTTCEEECCTTCCHHHHHHHHHH-CGGGCTTEEEEECSSHHHHHHHHHHHHHC
T ss_pred ccCCEEEC----CCCCCCcHHHHHHHHHCCCEEEEcCCCCHHHHHHHHhh-CchhhheeEeecCCChHHHHHHHHHHhcc
Confidence 45776663 22222335677788999988888777777765443221 1123322222112222 24555554432
Q ss_pred CceEEE-EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 216 EGFVYL-VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 216 ~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.|...+ +... .| .+....+.++++|+.+ ++||++|+. .|+++++++.++|||+++||
T Consensus 131 ~g~~~i~i~~~--~g----~~~~~~~~i~~lr~~~~~~~vi~g~v-~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 131 PQVKYICLDVA--NG----YSEHFVEFVKDVRKRFPQHTIMAGNV-VTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp TTCCEEEEECS--CT----TBHHHHHHHHHHHHHCTTSEEEEEEE-CSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEEec--CC----CcHHHHHHHHHHHHhcCCCeEEEEeC-CCHHHHHHHHHhCCCEEEEC
Confidence 233222 2211 12 2345678899999988 899988854 56999999999999999996
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.11 Score=48.15 Aligned_cols=204 Identities=18% Similarity=0.224 Sum_probs=132.2
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.|+..++.| -++-.|= -.+++...-++++.++.+..+|-=--| |- ++ . . ..+.+..
T Consensus 6 ~~~ll~~A~~~~-yAv~AfN---v~n~e~~~avl~AAe~~~sPvIlq~s~-------~~-~~----y---~--g~~~~~~ 64 (286)
T 1gvf_A 6 TKYLLQDAQANG-YAVPAFN---IHNAETIQAILEVCSEMRSPVILAGTP-------GT-FK----H---I--ALEEIYA 64 (286)
T ss_dssp SHHHHHHHHHHT-CCEEEEE---CCSHHHHHHHHHHHHHHTCCCEEEECT-------TH-HH----H---S--CHHHHHH
T ss_pred HHHHHHHHHHCC-CEEEEEe---eCCHHHHHHHHHHHHHhCCCEEEECCh-------hH-Hh----h---c--CHHHHHH
Confidence 356677666554 4554454 456788888899999988887543211 21 10 0 1 2455667
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE------
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL------ 197 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~------ 197 (311)
+++...++.++||.+-. -+..-.+.+..+.++|.+.+.+ ..+|+|| ..++.+.++++|+.+=-
T Consensus 65 ~v~~~a~~~~VPValHl-----DHg~~~e~i~~ai~~GFtSVMiDgS~lp~eeNi~~Tk~vv~~ah~~gvsVEaElG~vg 139 (286)
T 1gvf_A 65 LCSAYSTTYNMPLALHL-----DHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG 139 (286)
T ss_dssp HHHHHHHHTTSCBEEEE-----EEECCHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred HHHHHHHhCCCcEEEEc-----CCCCCHHHHHHHHHcCCCeEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 78887778899998863 1222246888999999999988 4688887 67788899888863211
Q ss_pred ----Ee--C----CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCC
Q 021527 198 ----FT--T----PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISK 261 (311)
Q Consensus 198 ----li--s----p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst 261 (311)
-+ . --|.++..++..+. .|.+.+ + +..|.+-....++ .+.|+++++.+++|++. |.|+.
T Consensus 140 g~ed~~~~~~~~~~~T~Peea~~Fv~~-TgvD~LAvaiGt~HG~Y~~~p~Ld---~~~L~~I~~~~~vpLVlHGgSG~~- 214 (286)
T 1gvf_A 140 GVEDDMSVDAESAFLTDPQEAKRFVEL-TGVDSLAVAIGTAHGLYSKTPKID---FQRLAEIREVVDVPLVLHGASDVP- 214 (286)
T ss_dssp -----------CCSSCCHHHHHHHHHH-HCCSEEEECSSCCSSCCSSCCCCC---HHHHHHHHHHCCSCEEECCCTTCC-
T ss_pred CcccCcccccccccCCCHHHHHHHHHH-HCCCEEEeecCccccCcCCCCccC---HHHHHHHHHhcCCCEEEECCCCCC-
Confidence 01 0 11444555555543 333344 2 3444332222233 36788999989999876 66775
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhc
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.|++++..+.|.-=+=|+|.+-.
T Consensus 215 ~e~i~~ai~~Gv~KiNi~Tdl~~ 237 (286)
T 1gvf_A 215 DEFVRRTIELGVTKVNVATELKI 237 (286)
T ss_dssp HHHHHHHHHTTEEEEEECHHHHH
T ss_pred HHHHHHHHHCCCeEEEEChHHHH
Confidence 79999999999888889988744
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00051 Score=62.72 Aligned_cols=71 Identities=18% Similarity=0.048 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+..+.+.+..-..++++...+ ...+.++++.+.+++|+.+|+||++. ++++++ .|||-|++||+.
T Consensus 39 dp~~~A~~~~~~Ga~~l~vvDL~~----------~n~~~i~~i~~~~~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a 106 (260)
T 2agk_A 39 PSSYYAKLYKDRDVQGCHVIKLGP----------NNDDAAREALQESPQFLQVGGGINDT-NCLEWL-KWASKVIVTSWL 106 (260)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEESS----------SCHHHHHHHHHHSTTTSEEESSCCTT-THHHHT-TTCSCEEECGGG
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCC----------CCHHHHHHHHhcCCceEEEeCCCCHH-HHHHHh-cCCCEEEECcHH
Confidence 455555666555444567766554 11367888888889999999999985 999999 999999999999
Q ss_pred hch
Q 021527 283 VKL 285 (311)
Q Consensus 283 v~~ 285 (311)
++-
T Consensus 107 ~~~ 109 (260)
T 2agk_A 107 FTK 109 (260)
T ss_dssp BCT
T ss_pred Hhh
Confidence 873
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0094 Score=55.76 Aligned_cols=177 Identities=12% Similarity=0.111 Sum_probs=106.6
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|++.+.+.++.+.++|+|.|-+.--- -+++ -.+.++-.++++.+.+. -++||++-+-.|
T Consensus 40 g~iD~~~l~~lv~~li~~Gv~Gi~v~GtT----GE~~------------~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~ 103 (315)
T 3na8_A 40 GGLDLPALGRSIERLIDGGVHAIAPLGST----GEGA------------YLSDPEWDEVVDFTLKTVAHRVPTIVSVSDL 103 (315)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSEEECSSGG----GTGG------------GSCHHHHHHHHHHHHHHHTTSSCBEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc----cChh------------hCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 45667899999999999999999874111 0111 13555556666666543 368998876544
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecC-----CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+|++++.- ...++..+ |...++..++.++++=.| +.+.+-+.+++..-..+
T Consensus 104 ~t~--~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnI 181 (315)
T 3na8_A 104 TTA--KTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNV 181 (315)
T ss_dssp SHH--HHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTE
T ss_pred CHH--HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCE
Confidence 332 124567788999999998831 12245544 556667778877765433 23356666663333455
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+| ++ ..+.++++.+ +..|+.|.. +.+-..+..|+||+|-|++
T Consensus 182 vgiKd---ssg-------d~-~~~~~~~~~~~~~f~v~~G~D----~~~l~~l~~G~~G~is~~a 231 (315)
T 3na8_A 182 TMVKE---STG-------DI-QRMHKLRLLGEGRVPFYNGCN----PLALEAFVAGAKGWCSAAP 231 (315)
T ss_dssp EEEEE---CSS-------CH-HHHHHHHHHTTTCSCEEECCG----GGHHHHHHHTCSEEEESGG
T ss_pred EEEEC---CCC-------CH-HHHHHHHHHcCCCEEEEeCch----HHHHHHHHCCCCEEEechh
Confidence 54411 112 11 2344444433 456666654 3455666789999999876
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.06 Score=49.54 Aligned_cols=206 Identities=15% Similarity=0.183 Sum_probs=120.0
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~~ 128 (311)
.|.++++++++. ..+++=|. -.++.++++|+|+|-+| |+- ....+. ..+++++.+
T Consensus 20 ~lr~~~~~g~~i--~m~tayDa------~sA~l~e~aG~d~ilvG--------dSl-----~~~~lG~~dt~~vtldem~ 78 (275)
T 3vav_A 20 KLQAMREAGEKI--AMLTCYDA------SFAALLDRANVDVQLIG--------DSL-----GNVLQGQTTTLPVTLDDIA 78 (275)
T ss_dssp HHHHHHHHTCCE--EEEECCSH------HHHHHHHHTTCSEEEEC--------TTH-----HHHTTCCSSSTTCCHHHHH
T ss_pred HHHHHHHCCCcE--EEEeCcCH------HHHHHHHHcCCCEEEEC--------cHH-----HHHHcCCCCCCccCHHHHH
Confidence 455666676653 44555444 56777899999999776 221 011111 126899999
Q ss_pred HHHHHhhccC-CCcEEEEecCcchhccCHHH---HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe--CC-
Q 021527 129 SMLKEVVPQM-SCPIALFTYYNPILKRGVDN---FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT--TP- 201 (311)
Q Consensus 129 ~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~---fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li--sp- 201 (311)
..++.|++-. +.||+...-+.. | .+.++ -+.++.++|++||-+=|- .+..+..+.+.+.||++.--+ +|
T Consensus 79 ~h~~aV~r~~~~~~vvaD~pfgs-Y-~s~~~a~~~a~rl~kaGa~aVklEdg--~~~~~~i~~l~~~GIpv~gHlgltPq 154 (275)
T 3vav_A 79 YHTACVARAQPRALIVADLPFGT-Y-GTPADAFASAVKLMRAGAQMVKFEGG--EWLAETVRFLVERAVPVCAHVGLTPQ 154 (275)
T ss_dssp HHHHHHHHTCCSSEEEEECCTTS-C-SSHHHHHHHHHHHHHTTCSEEEEECC--GGGHHHHHHHHHTTCCEEEEEESCGG
T ss_pred HHHHHHHhcCCCCCEEEecCCCC-C-CCHHHHHHHHHHHHHcCCCEEEECCc--hhHHHHHHHHHHCCCCEEEecCCCce
Confidence 9999998776 478887631100 1 12333 344566679999988775 245566777788899865221 22
Q ss_pred ------------CChH------HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHH
Q 021527 202 ------------TTPT------DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPE 263 (311)
Q Consensus 202 ------------~t~~------eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e 263 (311)
.+.+ +|.+.+.+..-..+++. + ++. +..+++.+.+++|+ +|.|=..
T Consensus 155 ~~~~~gg~~vqgrt~~~a~~~i~rA~a~~eAGA~~ivlE---~-------vp~---~~a~~It~~l~iP~-igIGaG~-- 218 (275)
T 3vav_A 155 SVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLE---A-------VPT---LVAAEVTRELSIPT-IGIGAGA-- 218 (275)
T ss_dssp GHHHHC---CCCCSHHHHHHHHHHHHHHHHHTCSEEEEE---S-------CCH---HHHHHHHHHCSSCE-EEESSCS--
T ss_pred EEeccCCeEEEcCCHHHHHHHHHHHHHHHHcCCCEEEec---C-------CCH---HHHHHHHHhCCCCE-EEEccCC--
Confidence 2221 23333333233334443 1 222 36778888889998 5666542
Q ss_pred HHHHHHHcCCcEEEEhh-H-----------hhchhhhcCCchhHHHHHHHHHHHHHhh
Q 021527 264 HVQQVAGWGADGVIVGS-A-----------MVKLLGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 264 ~v~~v~~~GADGvIVGS-a-----------iv~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
++||=|.=. - |+|...+ ..+...+.+++|+++.|..
T Consensus 219 --------~cdgQvLv~~D~lG~~~~~~pkf~k~y~~--~~~~~~~a~~~y~~~V~~~ 266 (275)
T 3vav_A 219 --------ECSGQVLVLHDMLGVFPGKRPRFVKDFMQ--GQPSIFAAVEAYVRAVKDG 266 (275)
T ss_dssp --------CSSEEEECHHHHTTCSCSCCCTTCCCCCT--TCSSHHHHHHHHHHHHHHT
T ss_pred --------CCCceeeeHhhhcCCCCCCCCCcchhhhh--hHHHHHHHHHHHHHHHhcC
Confidence 367665422 1 3333322 1234578899999998864
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00098 Score=63.83 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=78.3
Q ss_pred cCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe-CCCChHHHHHHHHHhC
Q 021527 137 QMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT-TPTTPTDRMKAIVEAS 215 (311)
Q Consensus 137 ~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li-sp~t~~eri~~i~~~a 215 (311)
.++.||+.-. ...-+-.++...+.+.|.-|+|=...++|+.. +.+++..--....+ .+....++++.+.+.
T Consensus 40 ~l~~Pii~Ap----M~~vte~~lA~A~a~~Gg~gvi~~~~s~ee~~---~~i~~~~~~~~~~~g~~~~~~e~~~~a~~a- 111 (361)
T 3r2g_A 40 TLNLPVISAN----MDTITESNMANFMHSKGAMGALHRFMTIEENI---QEFKKCKGPVFVSVGCTENELQRAEALRDA- 111 (361)
T ss_dssp EESSCEEECC----STTTCSHHHHHHHHHTTCEEBCCSCSCHHHHH---HHHHTCCSCCBEEECSSHHHHHHHHHHHHT-
T ss_pred EcCCCEEECC----CCCchHHHHHHHHHHcCCCEEEeCCCCHHHHH---HHHhhcceEEEEEcCCCHHHHHHHHHHHHc-
Confidence 3678977743 22234467888899999888766566666543 34444331111112 222223556555443
Q ss_pred CceEEE-EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 216 EGFVYL-VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 216 ~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
|+.++ +... .| .+..+.+.++++|+.. ++||++| +|.|+++++.+.++|||+++||
T Consensus 112 -GvdvI~id~a--~G----~~~~~~e~I~~ir~~~~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 112 -GADFFCVDVA--HA----HAKYVGKTLKSLRQLLGSRCIMAG-NVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp -TCCEEEEECS--CC----SSHHHHHHHHHHHHHHTTCEEEEE-EECSHHHHHHHHHTTCSEEEEC
T ss_pred -CCCEEEEeCC--CC----CcHhHHHHHHHHHHhcCCCeEEEc-CcCCHHHHHHHHHcCCCEEEEc
Confidence 44333 2211 12 2344567899999875 7899775 5889999999999999999995
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.016 Score=53.51 Aligned_cols=175 Identities=18% Similarity=0.177 Sum_probs=106.0
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCcc
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYNP 150 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n~ 150 (311)
.-|++.+.+.++.+.++|+|.|-+.---. +++ -.+.++-.++++.+.+. -++||+.-+-.|.
T Consensus 19 ~iD~~~l~~lv~~li~~Gv~gl~v~GttG----E~~------------~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~ 82 (292)
T 3daq_A 19 KVNLEALKAHVNFLLENNAQAIIVNGTTA----ESP------------TLTTDEKELILKTVIDLVDKRVPVIAGTGTND 82 (292)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEESSGGG----TGG------------GSCHHHHHHHHHHHHHHHTTSSCEEEECCCSC
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcccc----ccc------------cCCHHHHHHHHHHHHHHhCCCCcEEEeCCccc
Confidence 34567899999999999999998851110 111 13455555666665543 4689988765543
Q ss_pred hhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCceE
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gfi 219 (311)
... .-+..+.+.++|+||+++. - ...++..+ |+..+...++.++++=.| ..+.+-+.++++ -..++
T Consensus 83 t~~--ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~pniv 159 (292)
T 3daq_A 83 TEK--SIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ-HPYIV 159 (292)
T ss_dssp HHH--HHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHT-STTEE
T ss_pred HHH--HHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc-CCCEE
Confidence 321 2456778899999999883 1 12244444 455566678887766433 334566666665 34555
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCC---CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESST---KPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~---~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+=. .+| ++ +.+.++++.++ .-|+.|.. +.+-..+..|+||+|-|++
T Consensus 160 giK~---ssg-------d~-~~~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~~ 209 (292)
T 3daq_A 160 ALKD---ATN-------DF-EYLEEVKKRIDTNSFALYSGND----DNVVEYYQRGGQGVISVIA 209 (292)
T ss_dssp EEEE---CCC-------CH-HHHHHHHTTSCTTTSEEEESCG----GGHHHHHHTTCCEEEESGG
T ss_pred EEEe---CCC-------CH-HHHHHHHHHCCCCCEEEEECCH----HHHHHHHhcCCCEEEeCHH
Confidence 4411 112 12 44666665543 44555443 4466667799999998875
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0061 Score=57.20 Aligned_cols=105 Identities=13% Similarity=0.208 Sum_probs=71.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|||+|-+|...+.|-++..-.+. .++.+...|+.++++.++||-+.+|-
T Consensus 31 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~e----------E~~Rv~pvI~~l~~~~~vpiSIDT~~------ 94 (314)
T 2vef_A 31 ALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEE----------EIQRVVPVIKAIRKESDVLISIDTWK------ 94 (314)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHH----------HHHHHHHHHHHHHHHCCCEEEEECSC------
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHH----------HHHHHHHHHHHHHhhCCceEEEeCCC------
Confidence 45778899999999999999999988888554322121 12345678888888789999999873
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEe
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFT 199 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~li 199 (311)
.+-++.+.++|++- |.|+.-+. ..++.+.++++|...|.+-
T Consensus 95 --~~Va~aAl~aGa~i--INDVsg~~~d~~m~~v~a~~~~~vvlmh 136 (314)
T 2vef_A 95 --SQVAEAALAAGADL--VNDITGLMGDEKMPHVVAEARAQVVIMF 136 (314)
T ss_dssp --HHHHHHHHHTTCCE--EEETTTTCSCTTHHHHHHHHTCEEEEEC
T ss_pred --HHHHHHHHHcCCCE--EEECCCCCCChHHHHHHHHcCCCEEEEe
Confidence 34567788889874 45554321 1346667889998877764
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0096 Score=54.97 Aligned_cols=179 Identities=12% Similarity=0.088 Sum_probs=108.4
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEec
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTY 147 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y 147 (311)
--|.-|.+.+.+.++.+.++|+|.|-+. |-+ ....-.+.++-.++++.+.+. -++||+.-+-
T Consensus 14 ~dg~iD~~~l~~lv~~li~~Gv~gl~~~---------Gtt-------GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg 77 (292)
T 2vc6_A 14 ADDRIDEVALHDLVEWQIEEGSFGLVPC---------GTT-------GESPTLSKSEHEQVVEITIKTANGRVPVIAGAG 77 (292)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCSEEETT---------SGG-------GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEEC---------ccc-------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 4477888999999999999999999874 210 000114555555666665543 3689888765
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCC
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASE 216 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~ 216 (311)
.|... ..-+..+.+.++|+||+++. - ...++..+ |...++..++..+++=.| +.+.+-+.++++.-.
T Consensus 78 ~~~t~--~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~p 155 (292)
T 2vc6_A 78 SNSTA--EAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCP 155 (292)
T ss_dssp CSSHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCT
T ss_pred CccHH--HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHhhCC
Confidence 54332 12356777899999999883 1 12245444 455666778877665332 334566666665234
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.++.+=. .+|. + ..+.++++.+ +..|+.|.. +.+-..+..|+||+|-|++
T Consensus 156 nIvgiK~---s~gd-------~-~~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~~ 207 (292)
T 2vc6_A 156 NVKGVXD---ATGN-------L-LRPSLERMACGEDFNLLTGED----GTALGYMAHGGHGCISVTA 207 (292)
T ss_dssp TEEEEEE---CSCC-------T-HHHHHHHHHSCTTSEEEESCG----GGHHHHHHTTCCEEEESGG
T ss_pred CEEEEec---CCCC-------H-HHHHHHHHHcCCCEEEEECch----HHHHHHHHcCCCEEEecHH
Confidence 5544311 1121 1 2344444433 466766643 4556667799999999876
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0011 Score=65.42 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=84.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.+..+.+.|+|.+.+.. +.| .. ...++.++.+++..++|++.-.-. ..+-
T Consensus 230 ~~~a~~l~~~gvd~lvvdt------a~G--------------~~-~~~L~~I~~l~~~~~vpvi~k~v~-------~~~~ 281 (486)
T 2cu0_A 230 IKRAIELDKAGVDVIVVDT------AHA--------------HN-LKAIKSMKEMRQKVDADFIVGNIA-------NPKA 281 (486)
T ss_dssp HHHHHHHHHTTCSEEEEEC------SCC--------------CC-HHHHHHHHHHHHTCCSEEEEEEEC-------CHHH
T ss_pred HHHHHHHHHhcCCceEEEe------cCC--------------cE-eehhhHHHHHHHHhCCccccCCcC-------CHHH
Confidence 4667788889999887751 222 22 245678888888889999764321 1223
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQ 239 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~ 239 (311)
.+.+. |+|++.+ ...... + .+ .|. . .|. |.. . ....
T Consensus 282 a~~l~--G~d~v~v-g~g~g~---------------~-----~~--~r~--~-------------~~~-g~~--~-~~~l 317 (486)
T 2cu0_A 282 VDDLT--FADAVKV-GIGPGS---------------I-----CT--TRI--V-------------AGV-GVP--Q-ITAV 317 (486)
T ss_dssp HTTCT--TSSEEEE-CSSCST---------------T-----BC--HHH--H-------------TCC-CCC--H-HHHH
T ss_pred HHHhh--CCCeEEE-eeeecc---------------c-----ee--eeE--E-------------eec-Ccc--h-HHHH
Confidence 33344 9999877 221110 0 01 121 0 111 111 0 1122
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..+.++.+..++||++.+||.+..|+.+.+.+|||+|-+||.|...
T Consensus 318 ~~~~~~~~~~~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~~ 363 (486)
T 2cu0_A 318 AMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGT 363 (486)
T ss_dssp HHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred HHHHHHHHHcCCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhcC
Confidence 3455555555899999999999999999999999999999999964
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.031 Score=51.61 Aligned_cols=177 Identities=14% Similarity=0.174 Sum_probs=105.7
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -+++ -.+.++-.++++.+.+.. ++||+.-+-.|
T Consensus 19 g~iD~~~l~~lv~~li~~Gv~gl~~~Gtt----GE~~------------~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~ 82 (294)
T 3b4u_A 19 GTVDIDAMIAHARRCLSNGCDSVTLFGTT----GEGC------------SVGSRERQAILSSFIAAGIAPSRIVTGVLVD 82 (294)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSEEEESSTT----TTGG------------GSCHHHHHHHHHHHHHTTCCGGGEEEEECCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc----cChh------------hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCc
Confidence 45667889999999999999999884111 1111 145556666777666543 58988876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C----CChhhHHH-HHHHHHHc---CCCeEEEeCC-----CChHHHHHHHHHh
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D----VPLEETES-LQKEAMKN---KIELVLFTTP-----TTPTDRMKAIVEA 214 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D----lp~ee~~~-~~~~~~~~---gi~~I~lisp-----~t~~eri~~i~~~ 214 (311)
... ..-+..+.+.++|+||+++. - ...++..+ |...+... ++..+++=.| +.+.+-+.++++.
T Consensus 83 ~t~--~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~ 160 (294)
T 3b4u_A 83 SIE--DAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAA 160 (294)
T ss_dssp SHH--HHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred cHH--HHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHh
Confidence 322 12356777889999999883 2 23344554 44555656 7877765333 2345666667622
Q ss_pred CCc-eEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 215 SEG-FVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 215 a~g-fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
-.. ++.+=. .+| ++ ..+.++++.+ +..|+.|. -+.+-..+..|+||+|-|++
T Consensus 161 ~pn~ivgiKd---s~g-------d~-~~~~~~~~~~~~f~v~~G~----d~~~l~~l~~G~~G~is~~~ 214 (294)
T 3b4u_A 161 FPGIVTGVKD---SSG-------NW-SHTERLLKEHGDLAILIGD----ERDLARGVRLGGQGAISGVA 214 (294)
T ss_dssp CTTTEEEEEE---CCC-------CH-HHHHHHHHHHTTSEEEECC----HHHHHHHHHTTCCEEEESGG
T ss_pred CCCcEEEEEE---CCC-------CH-HHHHHHHHhCCCeEEEEcc----HHHHHHHHHCCCCEEEeCHH
Confidence 344 554311 111 11 2333443322 45565554 24566677799999999876
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.011 Score=54.79 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=110.3
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--C-CCcEE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--M-SCPIA 143 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~-~iPii 143 (311)
|| --|.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. - ++||+
T Consensus 19 Pf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~Gtt----GE~~~------------Ls~~Er~~v~~~~~~~~~g~rvpvi 81 (301)
T 3m5v_A 19 PF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTT----GESAT------------LTHEEHRTCIEIAVETCKGTKVKVL 81 (301)
T ss_dssp CE-ETTEECHHHHHHHHHHHHHTTCCEEECSSTT----TTGGG------------SCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred Cc-CCCCCCHHHHHHHHHHHHHcCCCEEEECccc----cChhh------------CCHHHHHHHHHHHHHHhCCCCCeEE
Confidence 35 5678888999999999999999999884111 11211 3455555666665543 2 68998
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHH
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIV 212 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~ 212 (311)
.-+-.|... ..-+..+.+.++|+|++++. - ...++..+ |...++..++.++++=.| ..+.+-+.+++
T Consensus 82 aGvg~~~t~--~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 159 (301)
T 3m5v_A 82 AGAGSNATH--EAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLF 159 (301)
T ss_dssp EECCCSSHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred EeCCCCCHH--HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHH
Confidence 876554332 12457778899999999883 1 12244444 556667778887765332 33456666776
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.-..++.+=. .+| ++ +.+.++++.+ +.-|+.|.. +.+-..+..|+||+|-|++
T Consensus 160 ~~~pnivgiKd---ssg-------d~-~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~~ 214 (301)
T 3m5v_A 160 RDCENIYGVKE---ASG-------NI-DKCVDLLAHEPRMMLISGED----AINYPILSNGGKGVISVTS 214 (301)
T ss_dssp HHCTTEEEEEE---CSS-------CH-HHHHHHHHHCTTSEEEECCG----GGHHHHHHTTCCEEEESGG
T ss_pred hcCCCEEEEEe---CCC-------CH-HHHHHHHHhCCCeEEEEccH----HHHHHHHHcCCCEEEehHH
Confidence 65245554421 112 11 2344444433 455655543 3455667789999998865
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.022 Score=53.62 Aligned_cols=190 Identities=12% Similarity=0.020 Sum_probs=110.9
Q ss_pred EEEEEeC----CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--C
Q 021527 65 LIPYITA----GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--M 138 (311)
Q Consensus 65 li~yi~~----G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~ 138 (311)
+.+.+|| |.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. -
T Consensus 39 ~~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtT----GE~~~------------Ls~eEr~~vi~~~ve~~~g 102 (332)
T 2r8w_A 39 SAFPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGST----GIYMY------------LTREERRRAIEAAATILRG 102 (332)
T ss_dssp EECCCCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTT----TTGGG------------SCHHHHHHHHHHHHHHHTT
T ss_pred eEEeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccc----cChhh------------CCHHHHHHHHHHHHHHhCC
Confidence 3344555 55677899999999999999999884111 11211 3445555666665543 3
Q ss_pred CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHH
Q 021527 139 SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDR 207 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~er 207 (311)
++||+.-+-.|... ..-+..+.+.++|+||+++. - ...++..+ |...+...++.++++=.| ..+.+-
T Consensus 103 rvpViaGvg~~st~--eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~ 180 (332)
T 2r8w_A 103 RRTLMAGIGALRTD--EAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDEL 180 (332)
T ss_dssp SSEEEEEECCSSHH--HHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHH
T ss_pred CCcEEEecCCCCHH--HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHH
Confidence 68998876554322 12356777889999999883 1 12245444 455667778877665322 234566
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
+.++++ -..++.+=. .+|. +....+.+.++++.++-.+.+-.|- -+.+-..+..|+||+|-|++-
T Consensus 181 ~~~La~-~pnIvgiKd---ssgd----~~~~~~~~~~l~~~~~~~f~v~~G~--D~~~l~~l~~G~~G~is~~an 245 (332)
T 2r8w_A 181 LVRLAY-IPNIRAIKM---PLPA----DADYAGELARLRPKLSDDFAIGYSG--DWGCTDATLAGGDTWYSVVAG 245 (332)
T ss_dssp HHHHHT-STTEEEEEE---CCCT----TCCHHHHHHHHTTTSCTTCEEEECC--HHHHHHHHHTTCSEEEESGGG
T ss_pred HHHHHc-CCCEEEEEe---CCCC----chhHHHHHHHHHHhcCCCEEEEeCc--hHHHHHHHHCCCCEEEeCHHH
Confidence 666654 344443311 1111 1111245666666543223333342 356677778999999999654
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.028 Score=52.53 Aligned_cols=203 Identities=12% Similarity=0.210 Sum_probs=128.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE-EecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL-FTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil-m~Y~n~i~~~ 154 (311)
.+.+.+.++.|...++|.|-+- +. +.| .+-...+++...++ +.+++.+. ++..+ .-+.
T Consensus 28 ~~~l~~~~~~L~~~~pd~vsVT--~~---~~g--------------~~r~~t~~~a~~i~-~~g~~~i~Hltc~~-~~~~ 86 (310)
T 3apt_A 28 EEALFRTLEELKAFRPAFVSIT--YG---AMG--------------STRERSVAWAQRIQ-SLGLNPLAHLTVAG-QSRK 86 (310)
T ss_dssp HHHHHHHHHHHGGGCCSEEEEC--CC---STT--------------CSHHHHHHHHHHHH-HTTCCBCEEEECTT-SCHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEe--cC---CCC--------------CcchhHHHHHHHHH-HhCCCeEEEeecCC-CCHH
Confidence 4567889999998899998872 21 122 22234566778888 56665333 33322 2334
Q ss_pred CHHHHHHHHHHcCCcEEEe--cCCC------------hhhHHHHHHHHHHc-C--CCeEEEeCC----CCh--HHHHHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVV--PDVP------------LEETESLQKEAMKN-K--IELVLFTTP----TTP--TDRMKAI 211 (311)
Q Consensus 155 g~~~fi~~~~~aGadGvii--pDlp------------~ee~~~~~~~~~~~-g--i~~I~lisp----~t~--~eri~~i 211 (311)
.++.++..+.+.|++.+++ .|.| ++.+.++.+.+++. | +..-.-..| ..+ +..+..+
T Consensus 87 ~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d~~~L 166 (310)
T 3apt_A 87 EVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHF 166 (310)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHHHHHH
Confidence 5677888899999998877 3533 33577788878776 6 333333444 222 1222222
Q ss_pred H-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEeeC-CCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 212 V-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGFG-ISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 212 ~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGfG-Ist~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
. +...|..|++|-. -.+ ..+.++++++|+. .++||+.|.= |.|..++..+.++ -|+-|-..+.+.++
T Consensus 167 k~Kv~aGAdf~iTQ~-------ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~--~Gv~iP~~l~~~l~ 237 (310)
T 3apt_A 167 KAKVEAGLDFAITQL-------FFNNAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEV--CGASIPGPLLAKLE 237 (310)
T ss_dssp HHHHHHHCSEEEECC-------CSCHHHHHHHHHHHHHTTCCSCEECEECCCCCTTHHHHHHHT--SCCCCCHHHHHHHH
T ss_pred HHHHHcCCCEEEecc-------cCCHHHHHHHHHHHHHcCCCCeEEEEecccCCHHHHHHHHHc--CCCCCCHHHHHHHH
Confidence 1 2234445665422 123 4577889999875 5799999986 8889999999775 68888889998887
Q ss_pred hcCC-c----hhHHHHHHHHHHHHHh
Q 021527 288 EAQS-P----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 288 ~~~~-~----~~~~~~~~~~~~~l~~ 308 (311)
...+ + ..+++...+++++|++
T Consensus 238 ~~~~d~~~~~~~gi~~a~e~~~~L~~ 263 (310)
T 3apt_A 238 RHQDDPKAVLEIGVEHAVRQVAELLE 263 (310)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5433 2 3456666677777763
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0075 Score=55.45 Aligned_cols=169 Identities=15% Similarity=0.262 Sum_probs=101.9
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILK 153 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~ 153 (311)
-+.+..++.++.+.+.|||+|.+|-..+-|-++-...+.= ++-+...++.+++ .++||-+.+|.
T Consensus 27 ~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE----------~~Rv~pvi~~l~~-~~v~iSIDT~~----- 90 (270)
T 4hb7_A 27 NNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEE----------LNRVLPVVEAIVG-FDVKISVDTFR----- 90 (270)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHH----------HHHHHHHHHHHTT-SSSEEEEECSC-----
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHH----------HHHHHHHHHHhhc-CCCeEEEECCC-----
Confidence 3457788999999999999999998888886653222221 1234567777775 68999999874
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCeEEEeCCCCh-------------HHHHHHHHHhC--Cc
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIELVLFTTPTTP-------------TDRMKAIVEAS--EG 217 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~I~lisp~t~-------------~eri~~i~~~a--~g 217 (311)
.+-++.+.++|++ ||.|..- ..-.++.+.+.+++...|++=...++ .+|+....+.. ..
T Consensus 91 ---~~Va~~al~aGa~--iINDVs~g~~d~~m~~~va~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~ 165 (270)
T 4hb7_A 91 ---SEVAEACLKLGVD--MINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSN 165 (270)
T ss_dssp ---HHHHHHHHHHTCC--EEEETTTTSSCTHHHHHHHHTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred ---HHHHHHHHHhccc--eeccccccccchhHHHHHHHcCCCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCc
Confidence 2456778899998 5677532 11235667788999887765332222 12333222211 12
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVA 269 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~ 269 (311)
-|.+-...|. | + ....-.++++++.+. .+.|+++| +|...-+.+++
T Consensus 166 ~IilDPGiGF-g-K--t~~~N~~ll~~l~~~~~lg~PvLvG--~SRKsfig~~l 213 (270)
T 4hb7_A 166 KIWLDPGIGF-A-K--TRNEEAEVMARLDELVATEYPVLLA--TSRKRFTKEMM 213 (270)
T ss_dssp GEEEECCTTS-S-C--CHHHHHHHHTCHHHHHTTCSCBEEC--CTTSHHHHHHH
T ss_pred eEEEeCCCCc-c-c--ccccHHHHHhhHHHHhcCCCCEEEE--ecHHHHHHHHh
Confidence 3666665553 2 1 122334566666553 47899986 33333344443
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.07 Score=49.09 Aligned_cols=206 Identities=15% Similarity=0.183 Sum_probs=119.5
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAI 127 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~ 127 (311)
..|.++++++++ +..+++=|. -.++.++++|+|+|-+| |+-. ...+. ..+++++.
T Consensus 7 ~~lr~~k~~g~~--i~~~tayDa------~sA~l~e~aG~d~ilvG--------dSl~-----~~~lG~~dt~~vTldem 65 (275)
T 1o66_A 7 NTLQKMKAAGEK--IAMLTAYES------SFAALMDDAGVEMLLVG--------DSLG-----MAVQGRKSTLPVSLRDM 65 (275)
T ss_dssp HHHHHHHHHTCC--EEEEECCSH------HHHHHHHHTTCCEEEEC--------TTHH-----HHTTCCSSSTTCCHHHH
T ss_pred HHHHHHHhCCCc--EEEEeCcCH------HHHHHHHHcCCCEEEEC--------HHHH-----HHHcCCCCCCCCCHHHH
Confidence 356666666665 345555454 56788899999999776 2100 01111 12689999
Q ss_pred HHHHHHhhccCCCcEE-EEecCcchhcc--CHHHHHH---HHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE--Ee
Q 021527 128 LSMLKEVVPQMSCPIA-LFTYYNPILKR--GVDNFMS---TVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL--FT 199 (311)
Q Consensus 128 ~~~i~~ir~~~~iPii-lm~Y~n~i~~~--g~~~fi~---~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~--li 199 (311)
+..++.|++-.+.|++ ... |+-.| +.++-++ ++.++|+++|-+=|- +|..+..+.+.+.|+.+.- .+
T Consensus 66 i~h~~aV~r~~~~~~vvaD~---pfgsy~~s~~~a~~na~rl~kaGa~aVklEdg--~e~~~~I~al~~agIpV~gHiGL 140 (275)
T 1o66_A 66 CYHTECVARGAKNAMIVSDL---PFGAYQQSKEQAFAAAAELMAAGAHMVKLEGG--VWMAETTEFLQMRGIPVCAHIGL 140 (275)
T ss_dssp HHHHHHHHHHCSSSEEEEEC---CTTSSSSCHHHHHHHHHHHHHTTCSEEEEECS--GGGHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHhhCCCCeEEEEC---CCCCccCCHHHHHHHHHHHHHcCCcEEEECCc--HHHHHHHHHHHHcCCCeEeeecc
Confidence 9999999887776544 432 12122 3454443 566699999988775 4566667777788986541 12
Q ss_pred CCCCh---------------H---HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCC
Q 021527 200 TPTTP---------------T---DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISK 261 (311)
Q Consensus 200 sp~t~---------------~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst 261 (311)
+|.+. + +|.+.+.+..-..+++. + ++. +..+++.+.+++|+ +|.|=..
T Consensus 141 tPQs~~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE---~-------vp~---~~a~~it~~l~iP~-igIGaG~ 206 (275)
T 1o66_A 141 TPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLME---C-------VLA---ELAKKVTETVSCPT-IGIGAGA 206 (275)
T ss_dssp CGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEE---S-------CCH---HHHHHHHHHCSSCE-EEESSCS
T ss_pred CceeecccCCeEEEeChHHHHHHHHHHHHHHHcCCcEEEEe---c-------CCH---HHHHHHHHhCCCCE-EEECCCC
Confidence 22221 1 23333333222334443 1 222 46778888889998 5665542
Q ss_pred HHHHHHHHHcCCcEEEEhhH------------hhchhhhcCCchhHHHHHHHHHHHHHhh
Q 021527 262 PEHVQQVAGWGADGVIVGSA------------MVKLLGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSa------------iv~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
++||=|.=.. |+|...+ ..+...+.+++|+++.|..
T Consensus 207 ----------~~dgQvLV~~D~lG~~~~~~pkf~k~y~~--~~~~~~~a~~~y~~~V~~~ 254 (275)
T 1o66_A 207 ----------DCDGQVLVMHDMLGIFPGKTAKFVKNFMQ--GHDSVQAAVRAYVAEVKAK 254 (275)
T ss_dssp ----------CSSEEEECHHHHTTCSSSSCCTTCCCSST--TCSSHHHHHHHHHHHHHHT
T ss_pred ----------CCCcceeeHHhhcCCCCCCCCCchhhhhh--HHHHHHHHHHHHHHHHhcC
Confidence 3677665332 2222221 1234567889999998864
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.02 Score=53.52 Aligned_cols=176 Identities=15% Similarity=0.152 Sum_probs=106.5
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|++.+.+.++.+.++|+|.|-+.--- -+++ -.+.++-.++++.+.+. -++||+.-+-.|
T Consensus 39 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtT----GE~~------------~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~ 102 (314)
T 3qze_A 39 GRLDWDSLAKLVDFHLQEGTNAIVAVGTT----GESA------------TLDVEEHIQVIRRVVDQVKGRIPVIAGTGAN 102 (314)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSGG----GTGG------------GCCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc----cChh------------hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCc
Confidence 45667899999999999999999884111 0111 13555555666665543 368998876555
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecC-----CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+|++++.- ...++..+ |...+...++.++++=.| ..+.+-+.++++ -..+
T Consensus 103 st~--eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~pnI 179 (314)
T 3qze_A 103 STR--EAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK-VPNI 179 (314)
T ss_dssp SHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT-STTE
T ss_pred CHH--HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc-CCCE
Confidence 332 124577788999999998841 12244444 556667778887766433 334566666654 3455
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+| ++ +.+.++++.+ +..|+.|.. +.+-..+..|+||+|-|++
T Consensus 180 vgiKd---ssg-------d~-~~~~~~~~~~~~~f~v~~G~d----~~~l~~l~~Ga~G~is~~a 229 (314)
T 3qze_A 180 IGIKE---ATG-------DL-QRAKEVIERVGKDFLVYSGDD----ATAVELMLLGGKGNISVTA 229 (314)
T ss_dssp EEEEE---CSC-------CH-HHHHHHHHHSCTTSEEEESCG----GGHHHHHHTTCCEEEESGG
T ss_pred EEEEc---CCC-------CH-HHHHHHHHHcCCCeEEEecCh----HHHHHHHHCCCCEEEecHH
Confidence 54411 112 12 3345554443 355655553 3466677799999998876
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0037 Score=62.10 Aligned_cols=126 Identities=15% Similarity=0.166 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCcEEEecCCC---hhhHHHHHHHHHHc--C-CCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccC-
Q 021527 157 DNFMSTVRDIGIRGLVVPDVP---LEETESLQKEAMKN--K-IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG- 229 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp---~ee~~~~~~~~~~~--g-i~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG- 229 (311)
.+.++.+.+.|++.+.+ |.. .....+..+.+++. + +..+. -.-.+ .+..+.+.+....++-+ ...|.+.
T Consensus 244 ~e~~~~l~e~gv~~l~V-d~~~g~~~~~~~~i~~lk~~~~~~~~Vi~-G~V~t-~~~a~~l~~aGad~I~V-g~~~g~~~ 319 (503)
T 1me8_A 244 RERVPALVEAGADVLCI-DSSDGFSEWQKITIGWIREKYGDKVKVGA-GNIVD-GEGFRYLADAGADFIKI-GIGGGSIC 319 (503)
T ss_dssp HHHHHHHHHHTCSEEEE-CCSCCCSHHHHHHHHHHHHHHGGGSCEEE-EEECS-HHHHHHHHHHTCSEEEE-CSSCSTTC
T ss_pred HHHHHHHHhhhccceEE-ecccCcccchhhHHHHHHHhCCCCceEee-ccccC-HHHHHHHHHhCCCeEEe-cccCCcCc
Confidence 34477788889997655 221 11122333444444 3 44432 12223 34444455555555544 3222111
Q ss_pred -CC--CCCCchHHHHHHHHhhcC---------CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 230 -AR--ASISGHVQTLLREIKESS---------TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 230 -~~--~~~~~~~~~~l~~vk~~~---------~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+ .+........+.++.+.. ++||++.+||.++.++.+.+.+|||+|.+||.|....
T Consensus 320 ~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~ 388 (503)
T 1me8_A 320 ITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFE 388 (503)
T ss_dssp CSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBT
T ss_pred ccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccc
Confidence 11 111111223344443321 6999999999999999999999999999999997643
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0015 Score=57.66 Aligned_cols=47 Identities=30% Similarity=0.391 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 238 VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+.++++++.+++|+++++||+++++++++.+.|||+|.+|+.+..
T Consensus 65 ~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~ 111 (253)
T 1h5y_A 65 FIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 111 (253)
T ss_dssp HHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred cHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 35678899988899999999999999999999999999999998764
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.018 Score=53.98 Aligned_cols=177 Identities=12% Similarity=0.084 Sum_probs=108.5
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|++.+.+.++.+.++|+|.|-+.---. +++ -.+.++-.++++.+.+. -++||+.-+-.|
T Consensus 27 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTG----E~~------------~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 90 (318)
T 3qfe_A 27 DTLDLASQERYYAYLARSGLTGLVILGTNA----EAF------------LLTREERAQLIATARKAVGPDFPIMAGVGAH 90 (318)
T ss_dssp TEECHHHHHHHHHHHHTTTCSEEEESSGGG----TGG------------GSCHHHHHHHHHHHHHHHCTTSCEEEECCCS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCcccc----Chh------------hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 556778999999999999999988851110 111 13555556666666553 468998876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--CC-----ChhhHHH-HHHHHHHcCCCeEEEeCCC------ChHHHHHHHHHhC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--DV-----PLEETES-LQKEAMKNKIELVLFTTPT------TPTDRMKAIVEAS 215 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--Dl-----p~ee~~~-~~~~~~~~gi~~I~lisp~------t~~eri~~i~~~a 215 (311)
... ..-++.+.+.++|+||+++. -. ..++..+ |...++..++.++++=.|. .+.+-+.++++.-
T Consensus 91 ~t~--~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~~~ 168 (318)
T 3qfe_A 91 STR--QVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKN 168 (318)
T ss_dssp SHH--HHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHHHHHC
T ss_pred CHH--HHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHhhC
Confidence 332 12357778899999999883 11 1244444 5566677788877765553 2356666776534
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..++.+=. .+| ++ ..+.++++.+ +..|+.|.. +.+-..+..|+||+|-|++
T Consensus 169 pnIvgiKd---ssg-------d~-~~~~~~~~~~~~~~f~v~~G~d----~~~l~~l~~G~~G~is~~a 222 (318)
T 3qfe_A 169 PNVVGVKL---TCA-------SV-GKITRLAATLPPAAFSVFGGQS----DFLIGGLSVGSAGCIAAFA 222 (318)
T ss_dssp TTEEEEEE---SSC-------CH-HHHHHHHHHSCGGGCEEEESCG----GGHHHHHHTTCCEEECGGG
T ss_pred CCEEEEEe---CCC-------CH-HHHHHHHHhcCCCCEEEEEecH----HHHHHHHHCCCCEEEecHH
Confidence 55654421 112 12 2344444332 345655554 3455667799999998876
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.071 Score=48.77 Aligned_cols=207 Identities=16% Similarity=0.137 Sum_probs=119.9
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAI 127 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~ 127 (311)
..|.++++++++ +..+++=|. -.++.++++|+|+|-+| |+ . ....+. ..+++++.
T Consensus 7 ~~lr~~k~~g~~--i~~~tayD~------~sA~l~e~aG~d~ilvG--------ds-l----~~~~lG~~dt~~vtldem 65 (264)
T 1m3u_A 7 SLLQKYKQEKKR--FATITAYDY------SFAKLFADEGLNVMLVG--------DS-L----GMTVQGHDSTLPVTVADI 65 (264)
T ss_dssp HHHHHHHHHTCC--EEEEECCSH------HHHHHHHHHTCCEEEEC--------TT-H----HHHTTCCSSSTTCCHHHH
T ss_pred HHHHHHHHCCCc--EEEEeCcCH------HHHHHHHHcCCCEEEEC--------HH-H----HHHHcCCCCCCCcCHHHH
Confidence 356666666665 344555454 56788899999999987 11 0 001111 12688999
Q ss_pred HHHHHHhhccCCCcE-EEEecCcchhccCHHHHHH---HHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE--EeCC
Q 021527 128 LSMLKEVVPQMSCPI-ALFTYYNPILKRGVDNFMS---TVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL--FTTP 201 (311)
Q Consensus 128 ~~~i~~ir~~~~iPi-ilm~Y~n~i~~~g~~~fi~---~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~--lisp 201 (311)
+..++.|++-.+.|+ +...=|-. |. +.++-++ ++.++|+++|-+=|- +|..+..+.+.+.|+.+.- -++|
T Consensus 66 i~h~~aV~r~~~~~~vvaD~pfgs-y~-~~~~a~~~a~rl~kaGa~aVklEgg--~e~~~~I~al~~agipV~gHiGLtP 141 (264)
T 1m3u_A 66 AYHTAAVRRGAPNCLLLADLPFMA-YA-TPEQAFENAATVMRAGANMVKIEGG--EWLVETVQMLTERAVPVCGHLGLTP 141 (264)
T ss_dssp HHHHHHHHHHCTTSEEEEECCTTS-SS-SHHHHHHHHHHHHHTTCSEEECCCS--GGGHHHHHHHHHTTCCEEEEEESCG
T ss_pred HHHHHHHHhhCCCCcEEEECCCCC-cC-CHHHHHHHHHHHHHcCCCEEEECCc--HHHHHHHHHHHHCCCCeEeeecCCc
Confidence 999999988777654 44321100 11 4454443 666699999988775 4566667777788987551 1222
Q ss_pred -------------CChH------HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCH
Q 021527 202 -------------TTPT------DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP 262 (311)
Q Consensus 202 -------------~t~~------eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~ 262 (311)
.+.. +|.+.+.+..-..+++. + ++. +..+++.+.+++|+ +|.|=..
T Consensus 142 q~v~~~ggf~v~grt~~~a~~~i~rA~a~~eAGA~~ivlE---~-------vp~---~~a~~it~~l~iP~-igIGag~- 206 (264)
T 1m3u_A 142 QSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLE---C-------VPV---ELAKRITEALAIPV-IGIGAGN- 206 (264)
T ss_dssp GGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEE---S-------CCH---HHHHHHHHHCSSCE-EEESSCT-
T ss_pred eeecccCCeEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEe---c-------CCH---HHHHHHHHhCCCCE-EEeCCCC-
Confidence 2322 23333333233334443 1 222 46778888889998 5666542
Q ss_pred HHHHHHHHcCCcEEEEhhH------------hhchhhhcCCchhHHHHHHHHHHHHHhh
Q 021527 263 EHVQQVAGWGADGVIVGSA------------MVKLLGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSa------------iv~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
++||=|.=.. |+|...+ ..+...+.+++|+++.|..
T Consensus 207 ---------~~dgQvLV~~D~lG~~~~~~pkf~k~y~~--~~~~~~~a~~~y~~~V~~~ 254 (264)
T 1m3u_A 207 ---------VTDGQILVMHDAFGITGGHIPKFAKNFLA--ETGDIRAAVRQYMAEVESG 254 (264)
T ss_dssp ---------TSSEEEECHHHHTTCSCSSCCTTCCCSST--TTSSHHHHHHHHHHHHHHT
T ss_pred ---------CCCcceeeHHhhcCCCCCCCCCcchhhhh--hHHHHHHHHHHHHHHHhcC
Confidence 3677665322 2222211 1234567889999998864
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0098 Score=64.86 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=109.6
Q ss_pred CChhhHHHHHHHHHHCCCCE--EEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEE-----
Q 021527 74 PDLSTTAEALKLLDSCGSDI--IELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALF----- 145 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~--IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm----- 145 (311)
-+.++.+++++.|++.|+|+ ||++- |-.... +.+.+ +-+- ++.++++++. .++++..+
T Consensus 570 ~~~~dkl~ia~~L~~~gv~~~~iE~~g--------ga~f~~-~~~f~--~~~p---~e~l~~~~~~~~~~~~~~l~R~~n 635 (1165)
T 2qf7_A 570 MRTYDIARIAGTYSHALPNLLSLECWG--------GATFDV-SMRFL--TEDP---WERLALIREGAPNLLLQMLLRGAN 635 (1165)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEE--------TTHHHH-HHHHH--CCCH---HHHHHHHHHHCTTSEEEEEEETTT
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEeCC--------CCccHH-HHhhc--CCCH---HHHHHHHHHHchhhHHHHHhcccc
Confidence 55678999999999998777 99830 111111 11111 1122 2344444433 34566655
Q ss_pred --ecCcchhccCHHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEeCCC----------ChHHHH---
Q 021527 146 --TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFTTPT----------TPTDRM--- 208 (311)
Q Consensus 146 --~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~lisp~----------t~~eri--- 208 (311)
+|.+ .-....++|++.+.++|+|.+-+.|-. ++......+.+++.|......++.+ ++.+..
T Consensus 636 ~vg~~~-~~~~~~~~~i~~a~~~g~d~irif~sl~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~ 714 (1165)
T 2qf7_A 636 GVGYTN-YPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNL 714 (1165)
T ss_dssp BTCSSC-CCHHHHHHHHHHHHHHTCCEEEEECTTCCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHH
T ss_pred cccccc-CCchhHHHHHHHHHhcCcCEEEEEeeHHHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHH
Confidence 2322 111124679999999999998886532 3456778888899996544433211 233433
Q ss_pred -HHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEEE
Q 021527 209 -KAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 209 -~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGvI 277 (311)
+++.+..-..+++....|. ..|..+.++++.+|+.+++||-+ .+|... .+.-..+++|||.|=
T Consensus 715 ~~~~~~~Ga~~i~l~DT~G~-----~~P~~~~~lv~~l~~~~~~~i~~H~Hnd~GlAv-An~laAv~aGa~~vd 782 (1165)
T 2qf7_A 715 AVELEKAGAHIIAVKDMAGL-----LKPAAAKVLFKALREATGLPIHFHTHDTSGIAA-ATVLAAVEAGVDAVD 782 (1165)
T ss_dssp HHHHHHTTCSEEEEEETTCC-----CCHHHHHHHHHHHHHHCSSCEEEEECBTTSCHH-HHHHHHHHTTCSEEE
T ss_pred HHHHHHcCCCEEEEeCccCC-----cCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHH-HHHHHHHHhCCCEEE
Confidence 3333333345666665553 34677889999999988888876 456654 455666789998763
|
| >1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0021 Score=58.79 Aligned_cols=123 Identities=15% Similarity=0.219 Sum_probs=79.6
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHHH------------HHHHH-hC--
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDRM------------KAIVE-AS-- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~eri------------~~i~~-~a-- 215 (311)
-...+++.|++.+|+..- .+.|..++ ...+.++|+.+|+-+.-+ -++|- +...+ ..
T Consensus 81 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEt-leere~g~t~~vv~~Ql~~~l~~~~~~ 159 (256)
T 1aw2_A 81 SPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGES-DAQNEAGETMAVCARQLDAVINTQGVE 159 (256)
T ss_dssp CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCC-HHHHHTTCHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCCc-HHHHhcCCHHHHHHHHHHHHHhcCCHH
Confidence 456789999999999731 01233333 566788899988877643 33321 11111 11
Q ss_pred ---CceEEEEecCC-ccCCCCCCCchHHHHHHHHhhcC---------CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhH
Q 021527 216 ---EGFVYLVSSIG-VTGARASISGHVQTLLREIKESS---------TKPVAVGFGISKPEHVQQVAGW-GADGVIVGSA 281 (311)
Q Consensus 216 ---~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~~---------~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSa 281 (311)
.-.|-|.+.-. .||.. ..++...+..+.+|+.. +++|+.|++|+ ++|+.+++.. +.||+-||++
T Consensus 160 ~~~~vvIAYEPvWAIGTG~~-Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVGgA 237 (256)
T 1aw2_A 160 ALEGAIIAYEPIWAIGTGKA-ATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVK-PENAAAYFAQPDIDGALVGGA 237 (256)
T ss_dssp GGTTCEEEECCTTTTTSSCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCC-TTTHHHHTTSTTCCEEEESGG
T ss_pred HcCCEEEEECCHHHhCCCCC-CCHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCC-HHHHHHHHcCCCCCeeeecHH
Confidence 12454433221 36643 44556677777777642 47999999998 5999999977 8999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 238 sL~ 240 (256)
T 1aw2_A 238 ALD 240 (256)
T ss_dssp GGC
T ss_pred HhC
Confidence 887
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.017 Score=53.42 Aligned_cols=178 Identities=17% Similarity=0.195 Sum_probs=106.5
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecC
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYY 148 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~ 148 (311)
-|.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. -++||+.-+-.
T Consensus 15 dg~iD~~~l~~lv~~li~~Gv~gl~~~Gtt----GE~~~------------Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 78 (294)
T 2ehh_A 15 EGEVDYEALGNLIEFHVDNGTDAILVCGTT----GESPT------------LTFEEHEKVIEFAVKRAAGRIKVIAGTGG 78 (294)
T ss_dssp TTEECHHHHHHHHHHHHTTTCCEEEESSTT----TTGGG------------SCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECccc----cChhh------------CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 377888999999999999999999884111 11211 3445555566665543 36898887655
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~g 217 (311)
|... ..-+..+.+.++|+|++++. - ...++..+ |...+...++..+++=.| +.+.+-+.++++.-..
T Consensus 79 ~~t~--~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn 156 (294)
T 2ehh_A 79 NATH--EAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECEN 156 (294)
T ss_dssp SCHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTT
T ss_pred CCHH--HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCC
Confidence 4322 12356777899999999883 1 12244444 455666678877665333 3345666667623345
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+=. .+| ++ ..+.++++.+ +.-|+.|.. +.+-..+..|+||+|-|++
T Consensus 157 ivgiKd---s~g-------d~-~~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~a 207 (294)
T 2ehh_A 157 IVASKE---STP-------NM-DRISEIVKRLGESFSVLSGDD----SLTLPMMALGAKGVISVAN 207 (294)
T ss_dssp EEEEEE---CCS-------CH-HHHHHHHHHHCTTSEEEESSG----GGHHHHHHTTCCEEEESGG
T ss_pred EEEEEe---CCC-------CH-HHHHHHHHhcCCCeEEEECcH----HHHHHHHHCCCCEEEeCHH
Confidence 554311 112 11 2344443332 455665543 3455666799999999976
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0054 Score=57.77 Aligned_cols=132 Identities=12% Similarity=0.144 Sum_probs=77.2
Q ss_pred cCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH--HHHHHHHHh
Q 021527 137 QMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT--DRMKAIVEA 214 (311)
Q Consensus 137 ~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~--eri~~i~~~ 214 (311)
.++.||++-. ......+++.+.+.+.|.-|++.... .+....+.+.+++.|+....-+ +..++ ++.+.+.+.
T Consensus 44 ~l~~Pi~~a~----mag~s~~~la~a~~~~gg~g~~~~~~-~~~~~~~i~~~~~~g~~v~v~~-g~~~~~~~~a~~~~~~ 117 (336)
T 1ypf_A 44 KFKLPVVPAN----MQTIIDERIATYLAENNYFYIMHRFQ-PEKRISFIRDMQSRGLIASISV-GVKEDEYEFVQQLAAE 117 (336)
T ss_dssp EESSSEEECS----STTTCCHHHHHHHHHTTCCCCCCCSS-GGGHHHHHHHHHHTTCCCEEEE-CCSHHHHHHHHHHHHT
T ss_pred EecCcEEECC----CCCCChHHHHHHHHhCCCEEEecCCC-CHHHHHHHHHHHhcCCeEEEeC-CCCHHHHHHHHHHHhc
Confidence 3567877732 22233467877666776666666533 3455666777777775332222 22222 334444343
Q ss_pred CCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 215 SEGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 215 a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
...+.++ +.. + . +.+....+.++++|+.++.|+++.++|.++|+++++.++|||+++|+.
T Consensus 118 g~~~~~i~i~~-~-~----G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~ 178 (336)
T 1ypf_A 118 HLTPEYITIDI-A-H----GHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGI 178 (336)
T ss_dssp TCCCSEEEEEC-S-S----CCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred CCCCCEEEEEC-C-C----CCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEec
Confidence 3113222 211 1 1 234456788999999886444444457789999999999999999953
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.018 Score=53.05 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=106.6
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecC
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYY 148 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~ 148 (311)
-|.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. -++||+.-+-.
T Consensus 15 dg~iD~~~l~~lv~~li~~Gv~gl~~~Gtt----GE~~~------------Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 78 (289)
T 2yxg_A 15 NKEVDFDGLEENINFLIENGVSGIVAVGTT----GESPT------------LSHEEHKKVIEKVVDVVNGRVQVIAGAGS 78 (289)
T ss_dssp TTEECHHHHHHHHHHHHHTTCSEEEESSTT----TTGGG------------SCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECccc----cChhh------------CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 477888999999999999999999874111 11211 3445555566655543 36898887655
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~g 217 (311)
|... ..-+..+.+.++|+||+++. - ...++..+ |...+...++..+++=.| +.+.+-+.++++.-..
T Consensus 79 ~~t~--~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn 156 (289)
T 2yxg_A 79 NCTE--EAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLAEEYSN 156 (289)
T ss_dssp SSHH--HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTT
T ss_pred CCHH--HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHHhCCC
Confidence 4322 12356777889999999883 1 12244444 556667778877665333 2345666667623345
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+=. .+|. + ..+.++++.++.-|+.|.. +.+-..+..|+||+|-|++
T Consensus 157 ivgiK~---s~gd-------~-~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~~ 205 (289)
T 2yxg_A 157 ISAVKE---ANPN-------L-SQVSELIHDAKITVLSGND----ELTLPIIALGGKGVISVVA 205 (289)
T ss_dssp EEEEEE---CCSC-------T-HHHHHHHHHTCSEEEESCG----GGHHHHHHTTCCEEEESGG
T ss_pred EEEEEe---CCCC-------H-HHHHHHHHhCCeEEEECcH----HHHHHHHHCCCCEEEeChh
Confidence 544311 1121 1 2334443333556666643 3455667799999999976
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.022 Score=52.65 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=105.8
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. -++||+.-+-.|
T Consensus 23 g~iD~~~l~~lv~~li~~Gv~gl~~~Gtt----GE~~~------------Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 86 (297)
T 3flu_A 23 GSIHYEQLRDLIDWHIENGTDGIVAVGTT----GESAT------------LSVEEHTAVIEAVVKHVAKRVPVIAGTGAN 86 (297)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEESSTT----TTGGG------------SCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccc----cCccc------------CCHHHHHHHHHHHHHHhCCCCcEEEeCCCc
Confidence 55667899999999999999999884111 11211 3455555666665543 468998876555
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+|++++. - ...++..+ |...+...++..+++=.| +.+.+-+.++++ -..+
T Consensus 87 ~t~--~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~pni 163 (297)
T 3flu_A 87 NTV--EAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAE-IPNI 163 (297)
T ss_dssp SHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTT-STTE
T ss_pred CHH--HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHHc-CCCE
Confidence 332 12457778899999998873 1 12244444 556667778887766332 333466666653 3445
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+| ++ +.+.++++.+ +..|+.|.. +.+-..+..|+||+|-|++
T Consensus 164 vgiKd---ssg-------d~-~~~~~~~~~~~~~f~v~~G~d----~~~l~~l~~G~~G~is~~a 213 (297)
T 3flu_A 164 VGVKE---ASG-------NI-GSNIELINRAPEGFVVLSGDD----HTALPFMLCGGHGVITVAA 213 (297)
T ss_dssp EEEEE---CSC-------CH-HHHHHHHHHSCTTCEEEECCG----GGHHHHHHTTCCEEEESGG
T ss_pred EEEEe---CCC-------CH-HHHHHHHHhcCCCeEEEECcH----HHHHHHHhCCCCEEEechH
Confidence 44311 111 12 3345554443 345655532 4455667799999998876
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0047 Score=59.89 Aligned_cols=129 Identities=21% Similarity=0.239 Sum_probs=81.7
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCC-----------CeE----------
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI-----------ELV---------- 196 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi-----------~~I---------- 196 (311)
+++||+--. +..+ ...+++..+.++|.=|+|-..+++|+..+....+++..- .++
T Consensus 41 l~~PIi~a~-M~~V---s~~~lA~Ava~aGGlGvi~~~~~~e~~~~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~ 116 (400)
T 3ffs_A 41 LKIPLISSA-MDTV---TEHLMAVGMARLGGIGIIHKNMDMESQVNEVLKVKNWISNLEKNESTPDQNLDKESTDGKDTK 116 (400)
T ss_dssp ESSSEEECS-CTTT---CSSHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHCCC-------------------------
T ss_pred CCCCEEeCC-CCCc---CcHHHHHHHHHCCCEEEeCCCCCHHHHHHHHHHHHhhccCcccCCCCccccccCCCCCHHHHH
Confidence 577866532 2222 224677778888988987777777776655555543211 000
Q ss_pred ----------------------EEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEE
Q 021527 197 ----------------------LFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVA 254 (311)
Q Consensus 197 ----------------------~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~ 254 (311)
..+.+. ..++++.+.+..-.++.+-+.. +.+..+.+.++++|+..++||+
T Consensus 117 ~~~~~~~~p~~~~d~~g~l~v~~~v~~~-~~e~~~~lveaGvdvIvldta~-------G~~~~~~e~I~~ik~~~~i~Vi 188 (400)
T 3ffs_A 117 SNNNIDAYSNENLDNKGRLRVGAAIGVN-EIERAKLLVEAGVDVIVLDSAH-------GHSLNIIRTLKEIKSKMNIDVI 188 (400)
T ss_dssp ------CCTTCCBCTTSSBCCEEEECCC--CHHHHHHHHHTCSEEEECCSC-------CSBHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHhhhCcchhhccccceeEEeecCCC-HHHHHHHHHHcCCCEEEEeCCC-------CCcccHHHHHHHHHhcCCCeEE
Confidence 011111 1466766666555554332222 2345567889999998789997
Q ss_pred EeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 255 VGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 255 vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+| ++.|+++++.+.++|||+++||
T Consensus 189 ~g-~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 189 VG-NVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp EE-EECSHHHHHHHHHTTCSEEEEC
T ss_pred Ee-ecCCHHHHHHHHHcCCCEEEEe
Confidence 74 7789999999999999999996
|
| >1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0048 Score=56.14 Aligned_cols=122 Identities=18% Similarity=0.264 Sum_probs=78.5
Q ss_pred HHHHHHHcCCcEEEecCCC----hhh----HHHHHHHHHHcCCCeEEEeCCCChHHHH--------HH-HHHh----CCc
Q 021527 159 FMSTVRDIGIRGLVVPDVP----LEE----TESLQKEAMKNKIELVLFTTPTTPTDRM--------KA-IVEA----SEG 217 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp----~ee----~~~~~~~~~~~gi~~I~lisp~t~~eri--------~~-i~~~----a~g 217 (311)
-...+++.|++.+|+..-- +.| ...-...+.++|+.+|+-+.- +-++|- .. +... ...
T Consensus 78 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-~leere~g~t~~vv~~Ql~~~l~~~~~~ 156 (250)
T 1yya_A 78 SARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGE-PLEVREKGEAVPYTLRQLRGSLEGVEPP 156 (250)
T ss_dssp CHHHHHHTTCSEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHTTTCCCS
T ss_pred CHHHHHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHhcCCHHHHHHHHHHHHHhcCCHH
Confidence 4567899999999996310 112 222445677899998887764 333331 11 1111 111
Q ss_pred -----eEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEh
Q 021527 218 -----FVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQVAGW-GADGVIVG 279 (311)
Q Consensus 218 -----fiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVG 279 (311)
.|-|.+ ..| ||.. ..++...+..+.+|+. -+++|+.|++|+ ++|+++++.. +.||+-||
T Consensus 157 ~~~~vvIAYEPvWAIG-TG~~-Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVG 233 (250)
T 1yya_A 157 GPEALVIAYEPVWAIG-TGKN-ATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVN-PKNFADLLSMPNVDGGLVG 233 (250)
T ss_dssp SGGGCEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEESSCC-TTTHHHHHTSTTCCEEEES
T ss_pred HcCcEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCC-HHHHHHHHcCCCCCeeEee
Confidence 344433 333 6643 3455666666666664 258999999998 5999999977 89999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
++-.+
T Consensus 234 gAsL~ 238 (250)
T 1yya_A 234 GASLE 238 (250)
T ss_dssp GGGSS
T ss_pred HHHhC
Confidence 99887
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.033 Score=51.46 Aligned_cols=208 Identities=18% Similarity=0.235 Sum_probs=117.7
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAI 127 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~ 127 (311)
..|.++++++++ +..+++=|. -.++.++++|+|+|-+| |+-. ...+. ..+++++.
T Consensus 24 ~~lr~~k~~g~~--i~~~tayDa------~sA~l~e~aG~d~ilvG--------dSl~-----~~~lG~~dt~~vTldem 82 (281)
T 1oy0_A 24 HHLQRWKADGHK--WAMLTAYDY------STARIFDEAGIPVLLVG--------DSAA-----NVVYGYDTTVPISIDEL 82 (281)
T ss_dssp HHHHHHHHHTCC--EEEEECCSH------HHHHHHHTTTCCEEEEC--------TTHH-----HHTTCCSSSSSCCGGGT
T ss_pred HHHHHHHhCCCc--EEEEeCcCH------HHHHHHHHcCCCEEEEC--------HHHH-----HHHcCCCCCCCCCHHHH
Confidence 456666666665 445555444 57788899999999776 2100 01111 12678899
Q ss_pred HHHHHHhhccCCCcEEEE-ecCcchhcc--CHHH----HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE--EE
Q 021527 128 LSMLKEVVPQMSCPIALF-TYYNPILKR--GVDN----FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV--LF 198 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm-~Y~n~i~~~--g~~~----fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I--~l 198 (311)
+..++.|++-.+.|+++- . |+-.| +.++ -.+.++++|+++|-+=|- +|..+..+.+.+.|+.+. +.
T Consensus 83 i~h~~aV~r~~~~~~vvaD~---pfgsy~~s~~~a~~na~rl~~eaGa~aVklEdg--~e~~~~I~al~~agIpV~gHiG 157 (281)
T 1oy0_A 83 IPLVRGVVRGAPHALVVADL---PFGSYEAGPTAALAAATRFLKDGGAHAVKLEGG--ERVAEQIACLTAAGIPVMAHIG 157 (281)
T ss_dssp HHHHHHHHHHCTTSEEEEEC---CTTSSTTCHHHHHHHHHHHHHTTCCSEEEEEBS--GGGHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHhcCCCCeEEEEC---CCCcccCCHHHHHHHHHHHHHHhCCeEEEECCc--HHHHHHHHHHHHCCCCEEeeec
Confidence 999999988777675552 1 11112 2333 345567799999988775 355566666777898754 12
Q ss_pred eCCCCh------------H------HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC
Q 021527 199 TTPTTP------------T------DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS 260 (311)
Q Consensus 199 isp~t~------------~------eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs 260 (311)
++|.+. + +|.+.+.+..-..+++. + ++. +..+++.+.+++|+ +|.|=.
T Consensus 158 LtPqsv~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE---~-------vp~---~~a~~it~~l~iP~-igIGaG 223 (281)
T 1oy0_A 158 FTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVME---M-------VPA---ELATQITGKLTIPT-VGIGAG 223 (281)
T ss_dssp CCC--------------CHHHHHHHHHHHHHHHHTCSEEEEE---S-------CCH---HHHHHHHHHCSSCE-EEESSC
T ss_pred CCcceecccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEEe---c-------CCH---HHHHHHHHhCCCCE-EEeCCC
Confidence 233331 1 23333333223334443 1 222 46778888889998 566554
Q ss_pred CHHHHHHHHHcCCcEEEEhhH-hhchhhhc--------CC-chhHHHHHHHHHHHHHhh
Q 021527 261 KPEHVQQVAGWGADGVIVGSA-MVKLLGEA--------QS-PEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSa-iv~~~~~~--------~~-~~~~~~~~~~~~~~l~~~ 309 (311)
. ++||=|.=.. +.-...+. .+ .+...+.+++|+++.|..
T Consensus 224 ~----------~~dgQvLV~~D~lG~~~~~~pkf~k~y~~~~~~~~~a~~~y~~~V~~~ 272 (281)
T 1oy0_A 224 P----------NCDGQVLVWQDMAGFSGAKTARFVKRYADVGGELRRAAMQYAQEVAGG 272 (281)
T ss_dssp S----------CSSEEEECHHHHTTCSCSCCCTTCCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred C----------CCCcceeeHhhhcCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 2 3777665332 22211110 01 233467888999988864
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0042 Score=68.69 Aligned_cols=37 Identities=19% Similarity=0.023 Sum_probs=35.0
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
++||++.+||.+..++.+.+.+|||+|-+||++...+
T Consensus 1099 ~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~al 1135 (1520)
T 1ofd_A 1099 RVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAE 1135 (1520)
T ss_dssp GCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHT
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHH
Confidence 6999999999999999999999999999999998765
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.014 Score=54.38 Aligned_cols=184 Identities=17% Similarity=0.168 Sum_probs=109.5
Q ss_pred cEEEEEeC----CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--
Q 021527 64 ALIPYITA----GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-- 137 (311)
Q Consensus 64 ~li~yi~~----G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-- 137 (311)
.+.+.+|| |.-|++.+.+.++.+.++|+|.|-+.---. +++. .+.++-.++++.+.+.
T Consensus 19 v~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttG----E~~~------------Lt~~Er~~v~~~~~~~~~ 82 (304)
T 3l21_A 19 LLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTG----ESPT------------TTDGEKIELLRAVLEAVG 82 (304)
T ss_dssp EEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTT----TGGG------------SCHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCcccc----chhh------------CCHHHHHHHHHHHHHHhC
Confidence 44445555 456678999999999999999998841111 1111 3555556666666553
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC-----CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHH
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTD 206 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~e 206 (311)
-++||+.-+-.|... ..-+..+.+.++|+|++++.- ...++..+ |...++..++.++++=.| ..+.+
T Consensus 83 grvpviaGvg~~~t~--~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~ 160 (304)
T 3l21_A 83 DRARVIAGAGTYDTA--HSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPD 160 (304)
T ss_dssp TTSEEEEECCCSCHH--HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHH
T ss_pred CCCeEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHH
Confidence 468998876544332 124577788999999998841 12245544 455556668877765322 33456
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
-+.++++ -..++.+=. .+| ++ +.+.++....+..++.|.. +.+-..+..|+||+|-|++
T Consensus 161 ~~~~La~-~pnIvgiKd---ssg-------d~-~~~~~~~~~~~f~v~~G~d----~~~l~~l~~Ga~G~is~~~ 219 (304)
T 3l21_A 161 TIRALAS-HPNIVGVXD---AKA-------DL-HSGAQIMADTGLAYYSGDD----ALNLPWLRMGATGFISVIA 219 (304)
T ss_dssp HHHHHHT-STTEEEEEE---CSC-------CH-HHHHHHHHHHCCEEEESSG----GGHHHHHHHTCCEEEESTH
T ss_pred HHHHHhc-CCCEEEEEC---CCC-------CH-HHHHHHhcCCCeEEEeCch----HHHHHHHHcCCCEEEecHH
Confidence 6666653 344554411 111 12 2334433334566766643 3455667799999998864
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0013 Score=66.29 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCH-----------HHHHHHHHcCCc
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP-----------EHVQQVAGWGAD 274 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~-----------e~v~~v~~~GAD 274 (311)
+..+.+.+..-..++++...|..+.. .......+.++++++.+++||.+|+||++. |++++++++|||
T Consensus 284 ~~A~~~~~~Ga~~l~~~dl~~~~~~~-~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad 362 (555)
T 1jvn_A 284 QLAQKYYQQGADEVTFLNITSFRDCP-LKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGAD 362 (555)
T ss_dssp HHHHHHHHTTCSEEEEEEEC---CCC-GGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEEEeCCcccccc-CCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCC
Confidence 33444433333346666544422111 011224678999988889999999999998 559999999999
Q ss_pred EEEEhhHhhc
Q 021527 275 GVIVGSAMVK 284 (311)
Q Consensus 275 GvIVGSaiv~ 284 (311)
-|+|||+.++
T Consensus 363 ~V~igt~~~~ 372 (555)
T 1jvn_A 363 KVSIGTDAVY 372 (555)
T ss_dssp EEEECHHHHH
T ss_pred EEEECCHHhh
Confidence 9999999876
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.018 Score=53.93 Aligned_cols=177 Identities=13% Similarity=0.106 Sum_probs=106.1
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|++.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. -++||++-+-.|
T Consensus 38 g~iD~~~l~~li~~li~~Gv~Gl~v~GtT----GE~~~------------Ls~~Er~~v~~~~v~~~~grvpViaGvg~~ 101 (315)
T 3si9_A 38 GAIDEKAFCNFVEWQITQGINGVSPVGTT----GESPT------------LTHEEHKRIIELCVEQVAKRVPVVAGAGSN 101 (315)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEECSSTT----TTGGG------------SCHHHHHHHHHHHHHHHTTSSCBEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccc----cCccc------------cCHHHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 45667899999999999999999874111 11211 3455555666665543 368998876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+||+++. - ...++..+ |...+...++.++++=.| +.+.+-+.++++.-..+
T Consensus 102 st~--~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnI 179 (315)
T 3si9_A 102 STS--EAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNI 179 (315)
T ss_dssp SHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTE
T ss_pred CHH--HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHhhCCCE
Confidence 322 12356778899999999883 1 12244444 556667778887766332 33456666676534556
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+|. . +.+.++++.+ +.-|+.|.. +.+-..+..|+||+|-|++
T Consensus 180 vgiKd---ssgd----~----~~~~~l~~~~~~~f~v~~G~d----~~~l~~l~~G~~G~is~~a 229 (315)
T 3si9_A 180 IGVKD---ATGK----I----ERASEQREKCGKDFVQLSGDD----CTALGFNAHGGVGCISVSS 229 (315)
T ss_dssp EEEEE---CSCC----T----HHHHHHHHHHCSSSEEEESCG----GGHHHHHHTTCCEEEESGG
T ss_pred EEEEe---CCCC----H----HHHHHHHHHcCCCeEEEecCH----HHHHHHHHcCCCEEEecHH
Confidence 54421 1221 1 2233443332 455666543 3455667799999998865
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.012 Score=54.83 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=102.4
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -+++ -.+.++-.++++.+.+. -++||++-+-.|
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~gl~v~GtT----GE~~------------~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 87 (309)
T 3fkr_A 24 GDLDLASQKRAVDFMIDAGSDGLCILANF----SEQF------------AITDDERDVLTRTILEHVAGRVPVIVTTSHY 87 (309)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSCEEESSGG----GTGG------------GSCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc----cCcc------------cCCHHHHHHHHHHHHHHhCCCCcEEEecCCc
Confidence 56778899999999999999998884111 0111 13455555666665543 468999876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--CC------ChhhHHH-HHHHHHHcCCCeEEEeCCC----ChHHHHHHHHHhCC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--DV------PLEETES-LQKEAMKNKIELVLFTTPT----TPTDRMKAIVEASE 216 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--Dl------p~ee~~~-~~~~~~~~gi~~I~lisp~----t~~eri~~i~~~a~ 216 (311)
... ..-+..+.+.++|+||+++. -. ..++..+ |...++..++..+++=.|. .+.+-+.++++.-.
T Consensus 88 ~t~--~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~~~p 165 (309)
T 3fkr_A 88 STQ--VCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAREIE 165 (309)
T ss_dssp SHH--HHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHHHST
T ss_pred hHH--HHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHhhCC
Confidence 332 12457778899999999883 21 1244444 5566677788877664442 23466666665445
Q ss_pred ceEEEE-ecCCccCCCCCCCchHHHHHHHHhhcCC--C-cEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 217 GFVYLV-SSIGVTGARASISGHVQTLLREIKESST--K-PVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 217 gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~~~--~-Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.++.+= .. +| + .+.+.++++..+ . .++.|..- -.+-..+..|+||+|.|.
T Consensus 166 nIvgiK~~~---~~-------~-~~~~~~~~~~~~~~~~~~~~G~d~---~~l~~~l~~G~~G~i~~n 219 (309)
T 3fkr_A 166 QVAYFXIET---PG-------A-ANKLRELIRLGGDAIEGPWDGEEA---ITLLADLHAGATGAMTGG 219 (309)
T ss_dssp TEEEEEECS---SS-------H-HHHHHHHHHHHGGGCCEEEECGGG---TTHHHHHHTTCCEECCCS
T ss_pred CEEEEECCC---cc-------h-HHHHHHHHHhcCCceeeecCCchH---HHHHHHHHCCCcEEEEhh
Confidence 565432 11 11 1 123444433322 1 12222211 123455679999998664
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.025 Score=52.16 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=105.2
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|++.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. -++||+.-+-.|
T Consensus 17 g~iD~~~l~~lv~~li~~Gv~gl~~~Gtt----GE~~~------------Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~ 80 (291)
T 3tak_A 17 GGVDWKSLEKLVEWHIEQGTNSIVAVGTT----GEAST------------LSMEEHTQVIKEIIRVANKRIPIIAGTGAN 80 (291)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSTT----TTGGG------------SCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECccc----ccccc------------CCHHHHHHHHHHHHHHhCCCCeEEEeCCCC
Confidence 55667899999999999999999874111 11211 3555555666665543 358998876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+|++++. - ...++..+ |...+...++.++++=.| +.+.+-+.++++ -..+
T Consensus 81 ~t~--~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~pni 157 (291)
T 3tak_A 81 STR--EAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAE-IPNI 157 (291)
T ss_dssp SHH--HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTT-STTE
T ss_pred CHH--HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHHc-CCCE
Confidence 332 12356778899999999873 1 12244444 556667778887766332 233455666653 3445
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+| ++ +.+.++++.+ +..|+.|. -+.+-..+..|+||+|-|++
T Consensus 158 vgiK~---ssg-------d~-~~~~~~~~~~~~~f~v~~G~----d~~~~~~l~~G~~G~is~~~ 207 (291)
T 3tak_A 158 VGIKD---ATG-------DV-PRGKALIDALNGKMAVYSGD----DETAWELMLLGADGNISVTA 207 (291)
T ss_dssp EEEEE---CSC-------CH-HHHHHHHHHHTTSSEEEECC----HHHHHHHHHTTCCEEEESGG
T ss_pred EEEEe---CCC-------CH-HHHHHHHHHcCCCeEEEECc----HHHHHHHHHCCCCEEEechh
Confidence 44311 111 11 2344443332 35565554 35566777899999998866
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.042 Score=52.04 Aligned_cols=176 Identities=17% Similarity=0.151 Sum_probs=103.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
|.-|++.+.+.++.+.++|+|.|-+.---. +++ -.+.++-.++++. .-.-++||+.-+-.|..
T Consensus 42 g~ID~~~l~~lv~~li~~Gv~Gl~v~GtTG----E~~------------~Ls~eEr~~vi~~-~~~grvpViaGvg~~st 104 (344)
T 2hmc_A 42 RTPDFDALVRKGKELIADGMSAVVYCGSMG----DWP------------LLTDEQRMEGVER-LVKAGIPVIVGTGAVNT 104 (344)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCCEEESSGGG----TGG------------GSCHHHHHHHHHH-HHHTTCCEEEECCCSSH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccCc----Chh------------hCCHHHHHHHHHH-HhCCCCcEEEecCCCCH
Confidence 556778999999999999999998741110 111 1344555555555 22346899887655432
Q ss_pred hccCHHHHHHHHHHcCCcEEEec--C----CChhhHHHHH-HHHH-HcCCCeEEEeCC----CChHHHHHHH-HHhCCce
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVP--D----VPLEETESLQ-KEAM-KNKIELVLFTTP----TTPTDRMKAI-VEASEGF 218 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviip--D----lp~ee~~~~~-~~~~-~~gi~~I~lisp----~t~~eri~~i-~~~a~gf 218 (311)
. ..-+..+.+.++|+||+++. - ...++..++. ..++ ..++.++++=.| +.+.+-+.++ ++ -..+
T Consensus 105 ~--eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l~~e~~~~L~a~-~pnI 181 (344)
T 2hmc_A 105 A--SAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFALRAE-HKNL 181 (344)
T ss_dssp H--HHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHHHHHHHH-CTTE
T ss_pred H--HHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecCccCCCcCHHHHHHHHhc-CCCE
Confidence 1 12356777889999999883 2 2234555544 4455 468887766555 2235666666 54 3445
Q ss_pred EEEEecCCccCCCCCCCc-hHHHHHHHHhhcCC--CcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISG-HVQTLLREIKESST--KPVAVGFGISKPEHVQQVA-GWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~-~~~~~l~~vk~~~~--~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSa 281 (311)
+.+= ....+ ++ ..+.++++.++ ..|+.|.. +.+-..+ ..|+||+|-|++
T Consensus 182 vGiK---------dssgp~d~-~~~~~~~~~~~~~f~v~~G~D----~~~l~~l~~~Ga~G~is~~a 234 (344)
T 2hmc_A 182 VGFK---------EFGGPADM-RYAAENITSRDDEVTLMIGVD----TAVVHGFVNCGATGAITGIG 234 (344)
T ss_dssp EEEE---------ECSCHHHH-HHHHHHTSCSSSSCEEEECSG----GGHHHHHHHSCCCEEEESGG
T ss_pred EEEE---------cCCCCCCH-HHHHHHHHHcCCCEEEEECcH----HHHHHHHHHcCCCEEEeCHH
Confidence 4331 11111 22 44666655443 44544443 3445556 789999999977
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.02 Score=53.20 Aligned_cols=181 Identities=13% Similarity=0.137 Sum_probs=105.0
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -++ .-.+.++-.++++.+.+. -++||+.-+-.|
T Consensus 28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtT----GE~------------~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~ 91 (306)
T 1o5k_A 28 GELDLESYERLVRYQLENGVNALIVLGTT----GES------------PTVNEDEREKLVSRTLEIVDGKIPVIVGAGTN 91 (306)
T ss_dssp TEECHHHHHHHHHHHHHTTCCEEEESSGG----GTG------------GGCCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccc----cch------------hhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCc
Confidence 67788999999999999999999884111 011 114555555666665543 368998876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+|++++. - ...++..+ |...+...++..+++=.| +.+.+-+.++++.-..+
T Consensus 92 st~--~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnI 169 (306)
T 1o5k_A 92 STE--KTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNV 169 (306)
T ss_dssp CHH--HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTE
T ss_pred cHH--HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHHhCCCE
Confidence 322 12356777889999999883 1 12245554 445555567776665333 23456666666223455
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+|. ...+.++++..... .+..|+.|.. +.+-..+..|+||+|-|++
T Consensus 170 vgiKd---ssgd----~~~~~~~~~~~~~~~~~f~v~~G~d----~~~l~~l~~G~~G~is~~a 222 (306)
T 1o5k_A 170 VGIXE---ANPD----IDQIDRTVSLTKQARSDFMVWSGND----DRTFYLLCAGGDGVISVVS 222 (306)
T ss_dssp EEEEE---CCCC----HHHHHHHHHHHHHHCTTCEEEESSG----GGHHHHHHHTCCEEEESGG
T ss_pred EEEeC---CCCC----HHHHHHHHHhcCCCCCcEEEEECcH----HHHHHHHHCCCCEEEecHH
Confidence 54411 1121 11222333322210 1455666653 3455666789999999876
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.021 Score=54.38 Aligned_cols=137 Identities=14% Similarity=0.120 Sum_probs=96.2
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPi 142 (311)
.+-.|.+.|..+.+.+.+.++.+.+.|.|.+++-+- .+.+...+.++.+|+.+ ++|+
T Consensus 136 ~v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g----------------------~~~~~~~e~v~avr~a~gd~~l 193 (384)
T 2pgw_A 136 AVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVG----------------------RGEKLDLEITAAVRGEIGDARL 193 (384)
T ss_dssp EEEBCEECCCSSHHHHHHHHHHHHHTTCCEEEEECC----------------------SCHHHHHHHHHHHHTTSTTCEE
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEECcC----------------------CCHHHHHHHHHHHHHHcCCcEE
Confidence 444566666677788999999999999999999421 13445567888888876 5666
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+- .|. -+..+++.++.+.+.++|+..+- .|
T Consensus 194 ~vD--~n~------------------------~~~~~~a~~~~~~l~~~~i~~iE--qP--------------------- 224 (384)
T 2pgw_A 194 RLD--ANE------------------------GWSVHDAINMCRKLEKYDIEFIE--QP--------------------- 224 (384)
T ss_dssp EEE--CTT------------------------CCCHHHHHHHHHHHGGGCCSEEE--CC---------------------
T ss_pred EEe--cCC------------------------CCCHHHHHHHHHHHHhcCCCEEe--CC---------------------
Confidence 553 231 11235666777777777776442 11
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHh
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAM 282 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSai 282 (311)
+++...+.++++|+.+++||+.+..+.++++++++++.| +|+|.+.-.-
T Consensus 225 -----------~~~~~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~ 274 (384)
T 2pgw_A 225 -----------TVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPRE 274 (384)
T ss_dssp -----------SCTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHH
T ss_pred -----------CChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchh
Confidence 111224568888888899999999999999999999766 7999885433
|
| >1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.002 Score=58.60 Aligned_cols=122 Identities=20% Similarity=0.312 Sum_probs=78.4
Q ss_pred HHHHHHHcCCcEEEecCCC----hhh----HHHHHHHHHHcCCCeEEEeCCCChHHH--------HHHHHHh--------
Q 021527 159 FMSTVRDIGIRGLVVPDVP----LEE----TESLQKEAMKNKIELVLFTTPTTPTDR--------MKAIVEA-------- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp----~ee----~~~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~~~-------- 214 (311)
-...+++.|++.+|+..-- +.| ..+-...+.++|+.+|+-+.- +-++| +....+.
T Consensus 79 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 157 (248)
T 1o5x_A 79 SAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGE-SLEQREQNKTIEVITKQVKAFVDLIDNF 157 (248)
T ss_dssp CHHHHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHTTGGGCCCT
T ss_pred CHHHHHHcCCCEEEeCChhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHhcCChHHHHHHHHHHHHhhhhhh
Confidence 4567899999999996310 112 222445678899998876664 44555 1111111
Q ss_pred CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----C------CCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhH
Q 021527 215 SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES----S------TKPVAVGFGISKPEHVQQVAG-WGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----~------~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSa 281 (311)
..-.|-|.+ ..| ||.. ..++...+..+.+|+. . +++|+.|++|+ ++|+++++. -+.||+-||++
T Consensus 158 ~~~vIAYEPvWAIG-TG~~-Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVGgA 234 (248)
T 1o5x_A 158 DNVILVYEPLWAIG-TGKT-ATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVN-TENCSSLIQQEDIDGFLVGNA 234 (248)
T ss_dssp TSEEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCC-TTTHHHHHTSTTCCEEEECGG
T ss_pred cCEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCCCC-HHHHHHHHcCCCCCeeEeeHH
Confidence 122333332 333 6643 3455666666666664 1 48999999998 579999986 78999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 235 sL~ 237 (248)
T 1o5x_A 235 SLK 237 (248)
T ss_dssp GGS
T ss_pred HHH
Confidence 887
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.031 Score=51.81 Aligned_cols=176 Identities=18% Similarity=0.257 Sum_probs=105.1
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. -++||+.-+-.|
T Consensus 28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtT----GE~~~------------Ls~eEr~~v~~~~~~~~~grvpViaGvg~~ 91 (301)
T 1xky_A 28 GNIDFAKTTKLVNYLIDNGTTAIVVGGTT----GESPT------------LTSEEKVALYRHVVSVVDKRVPVIAGTGSN 91 (301)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTT----TTGGG------------SCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc----cChhh------------CCHHHHHHHHHHHHHHhCCCceEEeCCCCC
Confidence 55677899999999999999999884111 11111 3445555566665543 368998876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+|++++. - ...++..+ |...+...++.++++=.| +.+.+-+.++++ -..+
T Consensus 92 ~t~--~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~pnI 168 (301)
T 1xky_A 92 NTH--ASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE-IENI 168 (301)
T ss_dssp CHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT-STTE
T ss_pred CHH--HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc-CCCE
Confidence 332 12356778899999999883 1 12245554 455566668877665433 234566666654 3445
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+| ++ +.+.++++.+ +..|+.|.. +.+-..+..|+||+|-|++
T Consensus 169 vgiKd---ssg-------d~-~~~~~~~~~~~~~f~v~~G~d----~~~l~~l~~G~~G~is~~a 218 (301)
T 1xky_A 169 VAIKD---AGG-------DV-LTMTEIIEKTADDFAVYSGDD----GLTLPAMAVGAKGIVSVAS 218 (301)
T ss_dssp EEEEE---CSS-------CH-HHHHHHHHHSCTTCEEEESSG----GGHHHHHHTTCCEEEESTH
T ss_pred EEEEc---CCC-------CH-HHHHHHHHhcCCCeEEEECcH----HHHHHHHHcCCCEEEcCHH
Confidence 43311 111 12 3345554443 345655543 3456667799999999866
|
| >1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0041 Score=56.78 Aligned_cols=122 Identities=18% Similarity=0.287 Sum_probs=79.1
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHHH------------HHHHH-hC--
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDRM------------KAIVE-AS-- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~eri------------~~i~~-~a-- 215 (311)
-...+++.|++.+|+..- .+.|..++ ...+.++|+.+|+-+.-+ -++|- +...+ ..
T Consensus 79 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEt-leere~g~t~~vv~~Ql~~~l~~~~~~ 157 (255)
T 1tre_A 79 SAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGET-EAENEAGKTEEVCARQIDAVLKTQGAA 157 (255)
T ss_dssp CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCC-HHHHHTTCHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHcCCCEEEECccccccccCCCHHHHHHHHHHHHHCCCEEEEEcCCc-HHHHhcCCHHHHHHHHHHHHHhcCCHH
Confidence 456789999999999731 01233333 567788999988877643 33321 11111 11
Q ss_pred ---CceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhh
Q 021527 216 ---EGFVYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQVAG-WGADGVIVGS 280 (311)
Q Consensus 216 ---~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGS 280 (311)
.-.|-|.+ ..| ||.. ..++...+..+.+|+. -+++|+.|++|+ ++|+.+++. -+.||+-||+
T Consensus 158 ~~~~vvIAYEPvWAIG-TG~~-Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVGg 234 (255)
T 1tre_A 158 AFEGAVIAYEPVWAIG-TGKS-ATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVN-ASNAAELFAQPDIDGALVGG 234 (255)
T ss_dssp GGTTCEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCC-TTTHHHHHTSTTCCEEEESG
T ss_pred HcCcEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCCC-HHHHHHHHcCCCCCeeEecH
Confidence 12444433 333 6643 4455666766667764 148999999998 579999986 7799999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+-.+
T Consensus 235 AsL~ 238 (255)
T 1tre_A 235 ASLK 238 (255)
T ss_dssp GGGC
T ss_pred HHhC
Confidence 9887
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.032 Score=52.04 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=104.4
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNP 150 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~ 150 (311)
|.-|++.+.+.++.+.++|+|.|-+.---. +++ -.+.++-.++++.+.+. -++||+.-+-.|.
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTG----E~~------------~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~ 87 (313)
T 3dz1_A 24 GKIDDVSIDRLTDFYAEVGCEGVTVLGILG----EAP------------KLDAAEAEAVATRFIKRAKSMQVIVGVSAPG 87 (313)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESTGGG----TGG------------GSCHHHHHHHHHHHHHHCTTSEEEEECCCSS
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEeCccCc----Chh------------hCCHHHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 456678999999999999999998841110 111 13455555666665544 3789988765543
Q ss_pred hhccCHHHHHHHHHHcCCcEEEec--CC--ChhhHHH-HHHHHHHcC--CCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVP--DV--PLEETES-LQKEAMKNK--IELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviip--Dl--p~ee~~~-~~~~~~~~g--i~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
.. ..-+..+.+.++|+|++++. -. +.++..+ |...+...+ +.++++=.| ..+.+-+.++++.-..+
T Consensus 88 t~--~ai~la~~A~~~Gadavlv~~P~~~~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnI 165 (313)
T 3dz1_A 88 FA--AMRRLARLSMDAGAAGVMIAPPPSLRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDSASC 165 (313)
T ss_dssp HH--HHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHHHCSSE
T ss_pred HH--HHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHHhCCCE
Confidence 32 12356778899999999883 11 1244444 455566667 887765322 33456666776544556
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
+.+=. .-+| ....+.++++..++. -+.-|+.|..-.. +...+..|+||+|.|..+
T Consensus 166 vgiKd--~~~~----~~~~~~~~~~~~~~~~~~~f~v~~G~d~~~---l~~~l~~G~~G~i~~~~~ 222 (313)
T 3dz1_A 166 VMLKH--EDWP----GLEKITTLRGFQKDGSLRPLSILCGNGGLF---LDFEMERGADGAMTGYCF 222 (313)
T ss_dssp EEEEE--CCSS----CHHHHHHHHHHHHHTSSCCCEEEECGGGTT---HHHHHHHTCCEEEECCSC
T ss_pred EEEEc--CCCC----CHHHHHHHHHhcCccCCCCeEEEeCCcHHH---HHHHHHCCCcEEEeCccc
Confidence 54411 0011 011222323322211 2456766665322 223356899999987543
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.013 Score=54.30 Aligned_cols=176 Identities=14% Similarity=0.099 Sum_probs=104.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|++.+.+.++.+.++|+|.|-+.--- -+++ -.+.++-.++++.+.+. -++||+.-+-.|
T Consensus 20 g~iD~~~l~~lv~~li~~Gv~gl~v~Gtt----GE~~------------~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 83 (300)
T 3eb2_A 20 GRVRADVMGRLCDDLIQAGVHGLTPLGST----GEFA------------YLGTAQREAVVRATIEAAQRRVPVVAGVAST 83 (300)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSCBBTTSGG----GTGG------------GCCHHHHHHHHHHHHHHHTTSSCBEEEEEES
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc----cCcc------------ccCHHHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 55667899999999999999999764111 0111 14555666666666543 468988865444
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+|++++. - ...++..+ |...+...++.++++=.|. .+.+-+.++++ -..+
T Consensus 84 ~t~--~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~pnI 160 (300)
T 3eb2_A 84 SVA--DAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAE-HPRI 160 (300)
T ss_dssp SHH--HHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHT-STTE
T ss_pred CHH--HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHHc-CCCE
Confidence 222 12356778899999999883 1 12245544 5566677788877765453 33566666643 3455
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+| ++ ..+.++++.+ +..|+.|..- .+-..+..|+||+|-|++
T Consensus 161 vgiKd---ssg-------d~-~~~~~~~~~~~~~f~v~~G~d~----~~~~~l~~G~~G~is~~a 210 (300)
T 3eb2_A 161 RYIKD---AST-------NT-GRLLSIINRCGDALQVFSASAH----IPAAVMLIGGVGWMAGPA 210 (300)
T ss_dssp EEEEE---CSS-------BH-HHHHHHHHHHGGGSEEEECTTS----CHHHHHHTTCCEEEEGGG
T ss_pred EEEEc---CCC-------CH-HHHHHHHHHcCCCeEEEeCcHH----HHHHHHhCCCCEEEeChh
Confidence 54411 112 11 2334443332 3455555443 345566789999999876
|
| >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.027 Score=52.60 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=114.3
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
...-++++++.+-+.+.+.+++..+.+.|++-|-. | ||..+|+. .-.+- .++++.||+..+
T Consensus 82 g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLrG----Dpp~~~~~----------~~~~A---~dLv~~ir~~~~ 144 (304)
T 3fst_A 82 GLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRG----DLPPGSGK----------PEMYA---SDLVTLLKEVAD 144 (304)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEECC----CCC----------------CCCH---HHHHHHHHHHCC
T ss_pred CCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEecC----CCCCCCCC----------CCCCH---HHHHHHHHHcCC
Confidence 45688999999999999999999999999988776 6 44333320 01222 345555554444
Q ss_pred CcEEEEecC--cchhccCHHHHHHH---HHHcCCcEEEec-CCChhhHHHHHHHHHHcCCC--eEEEeCCCChHHHHHHH
Q 021527 140 CPIALFTYY--NPILKRGVDNFMST---VRDIGIRGLVVP-DVPLEETESLQKEAMKNKIE--LVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 140 iPiilm~Y~--n~i~~~g~~~fi~~---~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~--~I~lisp~t~~eri~~i 211 (311)
.-|.+-+|- +|-. ...+.-++. =.++|+|.++-- =...+...+|.+.|++.|++ .++-+.|-++...+..+
T Consensus 145 f~IgvA~yPE~Hp~a-~~~~~d~~~Lk~KvdAGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~ 223 (304)
T 3fst_A 145 FDISVAAYPEVHPEA-KSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKL 223 (304)
T ss_dssp CEEEEEECTTCCTTC-SCHHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHH
T ss_pred CeEEEEeCCCcCCCC-CCHHHHHHHHHHHHHcCCCEEEeCccCCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHH
Confidence 556676663 2222 233333333 346899997653 12235677899999999874 66778888877666665
Q ss_pred HHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc---EEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 212 VEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP---VAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P---v~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.+ ..|. .+|. ++++++.+.-+-| ..+|.-+. .|+++++.+.|++|+=+-|
T Consensus 224 ~~-------------~~Gv--~iP~---~l~~~l~~~~dd~~~~~~~Gi~~a-~e~~~~L~~~gv~GiH~yt 276 (304)
T 3fst_A 224 AD-------------MTNV--RIPA---WMAQMFDGLDDDAETRKLVGANIA-MDMVKILSREGVKDFHFYT 276 (304)
T ss_dssp HH-------------HHTC--CCCH---HHHHHHTTCTTCHHHHHHHHHHHH-HHHHHHHHHTTCCEEEEEC
T ss_pred HH-------------cCCC--cCCH---HHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHCCCCEEEECC
Confidence 44 1222 3555 4555565544434 33455554 5899999999999995543
|
| >2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ... | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0082 Score=54.63 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=78.4
Q ss_pred HHHHHHHcCCcEEEecCCC----hhh----HHHHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHHh-C--
Q 021527 159 FMSTVRDIGIRGLVVPDVP----LEE----TESLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVEA-S-- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp----~ee----~~~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~-a-- 215 (311)
-...+++.|++.+|+..-- +.| ...-...+.++|+.+|+-+.- +-++| ++...+. .
T Consensus 79 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 157 (250)
T 2j27_A 79 SLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE-TLQERESGRTAVVVLTQIAAIAKKLKKA 157 (250)
T ss_dssp BHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHHHTCCGG
T ss_pred CHHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHhhcccHHHHHHHHHHHHHhcCCHH
Confidence 4567899999999996310 112 222445677889998876664 44555 1111111 1
Q ss_pred ---CceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEh
Q 021527 216 ---EGFVYLVS--SIGVTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVA-GWGADGVIVG 279 (311)
Q Consensus 216 ---~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~-~~GADGvIVG 279 (311)
.-.|-|.+ ..| ||.. ..++...+..+.+|+.. +++|+.|++|+ ++|+++++ .-+.||+-||
T Consensus 158 ~~~~~vIAYEPvWAIG-TG~~-Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVG 234 (250)
T 2j27_A 158 DWAKVVIAYEAVWAIG-TGKV-ATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVN-GKNARTLYQQRDVNGFLVG 234 (250)
T ss_dssp GGGGEEEEEECGGGTT-SSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCC-TTTHHHHHTSTTCCEEEES
T ss_pred HhCCEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCC-HHHHHHHHcCCCCCeeeee
Confidence 22344433 333 6743 44556666666677641 47999999998 57999988 6779999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
++-.+
T Consensus 235 gAsL~ 239 (250)
T 2j27_A 235 GASLK 239 (250)
T ss_dssp GGGGS
T ss_pred hHHHH
Confidence 99887
|
| >3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.12 Score=46.80 Aligned_cols=201 Identities=16% Similarity=0.183 Sum_probs=105.1
Q ss_pred CccEEEEEeCCCCCh-------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 62 KVALIPYITAGDPDL-------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 62 ~~~li~yi~~G~P~~-------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
+..|+.=+ ||+. +...++++.+... +.++.+|.+|=. +.||- .++.++++
T Consensus 13 ~~~LcVgL---D~~~~~~~~~~~~~~~lv~~l~~~-v~~~Kvg~~lf~--~~G~~-----------------g~~~l~~l 69 (255)
T 3qw3_A 13 RSLLCVGL---DPRAKTAAAAVEECKRLIEQTHEY-AAAYKPNAAFFE--FFGAE-----------------GWAALSEV 69 (255)
T ss_dssp TCCEEEEE---CCCCSSHHHHHHHHHHHHHHHGGG-CSEEEEBHHHHH--TTTHH-----------------HHHHHHHH
T ss_pred CCCEEEEe---CCCchhcchHHHHHHHHHHHhCCc-CcEEEEcHHHHH--hcCHH-----------------HHHHHHHH
Confidence 34455444 6773 5577888887655 899999988721 22432 12344444
Q ss_pred hc--cCCCcEEEEecCcchhccCHHHHHHHHH-HcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC--------
Q 021527 135 VP--QMSCPIALFTYYNPILKRGVDNFMSTVR-DIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT-------- 203 (311)
Q Consensus 135 r~--~~~iPiilm~Y~n~i~~~g~~~fi~~~~-~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t-------- 203 (311)
.+ +.+.||++..-..+|-.+ ...+++.+. +.|+|.+.++-..-.+ .+....+..|..+..++.-+.
T Consensus 70 ~~~~~~g~~VflDlK~~DI~nT-v~~~a~~~~~~lg~d~vTvh~~~G~~--~l~~~~~~~~~gv~vL~~tS~~~~~~~q~ 146 (255)
T 3qw3_A 70 IRAVPAGIPVVLDAKRGDIADT-ADAYATSAFKHLNAHAITASPYMGSD--SLQPFMRYPDKAVFVLCKTSNKGSNDLQC 146 (255)
T ss_dssp HHHSCTTCCBEEEEEECCCHHH-HHHHHHHHHTTSCCSEEEECCTTCHH--HHHHHHTCTTSEEEEEEECCSGGGGTTTT
T ss_pred HHHhcCCCeEEEEeecCCcHHH-HHHHHHHHHHHcCCCEEEEcccCCHH--HHHHHHHhhCCceEEEEeCCCccHHHHHh
Confidence 33 146789998766656443 346777775 6999999997443222 222222223433333321111
Q ss_pred -------hHHHHHHHHHh-C--CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE-eeCCCCHHHHHHHHHc
Q 021527 204 -------PTDRMKAIVEA-S--EGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV-GFGISKPEHVQQVAGW 271 (311)
Q Consensus 204 -------~~eri~~i~~~-a--~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v-GfGIst~e~v~~v~~~ 271 (311)
..+.+.+.++. . .|.+=+|. |.| .+ +.++.+|+.+ +.++++ |.|.. ..+..++.+.
T Consensus 147 ~~~~~~~~~~~V~~~a~~~~~~~g~~GvV~--~at------~~---~e~~~ir~~~~~~~~l~PGIg~q-g~tp~~a~~~ 214 (255)
T 3qw3_A 147 LRVGDRYLYEAVAERAEGPWNVNGNVGLVV--GAT------DP---VALARVRARAPTLWFLVPGIGAQ-GGSLKASLDA 214 (255)
T ss_dssp SEETTEEHHHHHHHHHHTGGGGGSCEEEEE--CSS------CH---HHHHHHHHHCSSCCEEECCC------CHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHhhhhCCeEEEE--CCC------CH---HHHHHHHHHCCCCeEEECCcCCC-CCCHHHHHHc
Confidence 12344344443 2 23232221 111 11 3477777765 456655 55543 1345556667
Q ss_pred CCc----E--EEEhhHhhchhhhcCCchhHHHHHHHHHH
Q 021527 272 GAD----G--VIVGSAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 272 GAD----G--vIVGSaiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
|+| + +|||-.|.+. .++.+..+++.+-++
T Consensus 215 G~d~~~~~~livvGR~I~~A----~dp~~aa~~i~~~i~ 249 (255)
T 3qw3_A 215 GLRADGSGMLINVSRGLARA----ADPRAAAKELCEEIN 249 (255)
T ss_dssp HCCTTSCCEEEEESHHHHTS----SCHHHHHHHHHHHHH
T ss_pred CCCcccCeeEEEeChhhcCC----CCHHHHHHHHHHHHH
Confidence 899 6 9999999884 234444444443333
|
| >2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.011 Score=54.11 Aligned_cols=122 Identities=19% Similarity=0.305 Sum_probs=78.3
Q ss_pred HHHHHHHcCCcEEEecCC----Chhh----HHHHHHHHHHcCCCeEEEeCCCChHHHH------------HHHH-Hh-C-
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEE----TESLQKEAMKNKIELVLFTTPTTPTDRM------------KAIV-EA-S- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee----~~~~~~~~~~~gi~~I~lisp~t~~eri------------~~i~-~~-a- 215 (311)
-...+++.|++.+|+..- .+.| ..+-...+.++|+.+|+-+.-+ -++|- +... .. .
T Consensus 80 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEt-leere~g~t~~vv~~Ql~~~l~~~~~~ 158 (257)
T 2yc6_A 80 SVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGET-LDERKANRTMEVNIAQLEALGKELGES 158 (257)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCC-HHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCCc-HHHHhcCCHHHHHHHHHHHHHhcCCCh
Confidence 456789999999999631 1122 2224556788999988877643 33321 1111 12 1
Q ss_pred -----CceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEE
Q 021527 216 -----EGFVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQVAGW-GADGVI 277 (311)
Q Consensus 216 -----~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v~~~-GADGvI 277 (311)
.-.|-|.+ ..| ||.. ..++...+..+.+|+. -+++|+.|++|+ ++|+.+++.. +.||+-
T Consensus 159 ~~~~~~vvIAYEPvWAIG-TG~~-Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~L 235 (257)
T 2yc6_A 159 KMLWKEVVIAYEPVWSIG-TGVV-ATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSAN-GSNNEKLGQCPNIDGFL 235 (257)
T ss_dssp HHHHHTEEEEECCGGGTT-TSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCC-TTTHHHHHTSTTCCEEE
T ss_pred hhccCCEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCccC-HHHHHHHHcCCCCCeee
Confidence 11344433 333 6743 3455566666666664 258999999998 5899999977 899999
Q ss_pred EhhHhhc
Q 021527 278 VGSAMVK 284 (311)
Q Consensus 278 VGSaiv~ 284 (311)
||++-.+
T Consensus 236 VGgAsL~ 242 (257)
T 2yc6_A 236 VGGASLK 242 (257)
T ss_dssp ESGGGGS
T ss_pred ecHHHHH
Confidence 9999886
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.01 Score=53.91 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.++.+|+.+++||.++.+|.++.++.++..+|||+|.+|++...
T Consensus 96 ~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~ 140 (254)
T 1vc4_A 96 LDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG 140 (254)
T ss_dssp HHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG
T ss_pred HHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccchH
Confidence 578889999999999999999999999999999999999998775
|
| >1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0017 Score=59.28 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=79.6
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHHH------------HHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDRM------------KAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~eri------------~~i~~~---- 214 (311)
-...+++.|++.+|+..- .+.|..++ ...+.++|+.+|+-+.- +-++|- +...+.
T Consensus 80 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 158 (255)
T 1b9b_A 80 SPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGE-TLEEREKGLTFCVVEKQVREGFYGLDKE 158 (255)
T ss_dssp CHHHHHTTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHHTCHHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHhcCCHHHHHHHHHHHHHhcCCHH
Confidence 456789999999999631 11233333 66778899998877664 434431 111111
Q ss_pred --CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEh
Q 021527 215 --SEGFVYLVS--SIGVTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVA-GWGADGVIVG 279 (311)
Q Consensus 215 --a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~-~~GADGvIVG 279 (311)
..-.|-|.+ ..| ||. +..++...+..+.+|+.. +++|+.|++|+ ++|+.+++ .-+.||+-||
T Consensus 159 ~~~~~vIAYEPvWAIG-TG~-~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVG 235 (255)
T 1b9b_A 159 EAKRVVIAYEPVWAIG-TGR-VATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIK-PDNFLGLIVQKDIDGGLVG 235 (255)
T ss_dssp HHTTCEEEECCGGGSS-SSC-CCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEESSCC-HHHHTTTSSSTTCCEEEES
T ss_pred HcCCEEEEECCHHHhC-CCC-CCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCcCC-HHHHHHHHcCCCCCeeEee
Confidence 123444433 333 664 344556666666676641 37999999997 79999988 6779999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
++-.+
T Consensus 236 gASLk 240 (255)
T 1b9b_A 236 GASLK 240 (255)
T ss_dssp GGGTS
T ss_pred hHhhc
Confidence 99887
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.032 Score=51.60 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=107.1
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEec
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTY 147 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y 147 (311)
--|.-|.+.+.+.++.+.++|+|.|-+.--- -+++ -.+.++-.++++.+.+. -++||+.-+-
T Consensus 14 ~dg~iD~~~l~~lv~~li~~Gv~gi~v~Gtt----GE~~------------~Ls~~Er~~v~~~~~~~~~grvpviaGvg 77 (297)
T 2rfg_A 14 INGQVDEKALAGLVDWQIKHGAHGLVPVGTT----GESP------------TLTEEEHKRVVALVAEQAQGRVPVIAGAG 77 (297)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCSEEECSSGG----GTGG------------GSCHHHHHHHHHHHHHHHTTSSCBEEECC
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccc----cchh------------hCCHHHHHHHHHHHHHHhCCCCeEEEccC
Confidence 4477888999999999999999999874110 0111 13455555666665543 3689888765
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCC
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASE 216 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~ 216 (311)
.|... ..-+..+.+.++|+|++++. - ...++..+ |...+...++..+++=.| +.+.+-+.++++ -.
T Consensus 78 ~~~t~--~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~p 154 (297)
T 2rfg_A 78 SNNPV--EAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAA-LP 154 (297)
T ss_dssp CSSHH--HHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT-ST
T ss_pred CCCHH--HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc-CC
Confidence 54322 12356777889999999884 1 12244444 455666778877665333 234566666654 34
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.++.+=. .+|. + +.+.++++.+ +..|+.|.. +.+-..+..|+||+|-|++
T Consensus 155 nIvgiKd---s~gd-------~-~~~~~~~~~~~~~f~v~~G~d----~~~l~~l~~G~~G~is~~a 206 (297)
T 2rfg_A 155 RIVGVKD---ATTD-------L-ARISRERMLINKPFSFLSGDD----MTAIAYNASGGQGCISVSA 206 (297)
T ss_dssp TEEEEEE---CSCC-------T-THHHHHHTTCCSCCEEEESCG----GGHHHHHHTTCCEEEESGG
T ss_pred CEEEEEe---CCCC-------H-HHHHHHHHhcCCCEEEEeCcH----HHHHHHHHCCCCEEEecHH
Confidence 4543311 1221 1 2355555544 345655543 3455666799999999976
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.033 Score=51.96 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=105.3
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -+++ -.+.++-.++++.+.+. -++||+.-+-.|
T Consensus 23 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtT----GE~~------------~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~ 86 (311)
T 3h5d_A 23 GSINFDAIPALIEHLLAHHTDGILLAGTT----AESP------------TLTHDEELELFAAVQKVVNGRVPLIAGVGTN 86 (311)
T ss_dssp SSBCTTHHHHHHHHHHHTTCCCEEESSTT----TTGG------------GSCHHHHHHHHHHHHHHSCSSSCEEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc----cChh------------hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCc
Confidence 44567899999999999999998875111 1121 14555666677666654 368998876554
Q ss_pred chhccCHHHHHHHHHHcCC-cEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMSTVRDIGI-RGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGa-dGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~g 217 (311)
... ..-++.+.+.++|+ ||+++. - ...++..+ |...+...++.++++=.| +.+.+-+.++++. ..
T Consensus 87 ~t~--~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~-pn 163 (311)
T 3h5d_A 87 DTR--DSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADH-PN 163 (311)
T ss_dssp SHH--HHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHTS-TT
T ss_pred CHH--HHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcC-CC
Confidence 332 12456778888997 998873 1 12245554 455556668877766433 3345666666653 44
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+ +... ++ +.+.++++.+ +.-|+.|.. +.+-..+..|+||+|-|++
T Consensus 164 Ivgi---------Kdss--d~-~~~~~~~~~~~~~f~v~~G~d----~~~l~~l~~Ga~G~is~~a 213 (311)
T 3h5d_A 164 IIGV---------KECT--SL-ANMAYLIEHKPEEFLIYTGED----GDAFHAMNLGADGVISVAS 213 (311)
T ss_dssp EEEE---------EECS--CH-HHHHHHHHHCCSSCEEEECCG----GGHHHHHHHTCCEEEESTH
T ss_pred EEEE---------EeCC--CH-HHHHHHHHHcCCCEEEEECcH----HHHHHHHHcCCCEEEechh
Confidence 5433 1111 22 3455555544 345555543 3455666789999999876
|
| >2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0055 Score=55.85 Aligned_cols=122 Identities=16% Similarity=0.288 Sum_probs=78.4
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHHH------------HHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDRM------------KAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~eri------------~~i~~~---- 214 (311)
-...+++.|++.+|+..- .+.|..++ ...+.++|+.+|+-+.- +-++|- +...+.
T Consensus 78 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 156 (252)
T 2btm_A 78 SPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGE-SLEEREAGQTNAVVASQVEKALAGLTPE 156 (252)
T ss_dssp CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHcCCCEEEeCchhcccccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 456788999999999731 01233333 56678889998887764 333331 111111
Q ss_pred --CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEh
Q 021527 215 --SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQVA-GWGADGVIVG 279 (311)
Q Consensus 215 --a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVG 279 (311)
..-.|-|.+ ..| ||.. ..+....+..+.+|+. -+++|+.|++|+ ++|+.+++ .-+.||+-||
T Consensus 157 ~~~~~vIAYEPvWAIG-TG~~-Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVG 233 (252)
T 2btm_A 157 QVKQAVIAYEPIWAIG-TGKS-STPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVK-PDNIRDFLAQQQIDGALVG 233 (252)
T ss_dssp HHTTCEEEECCGGGTT-TSCC-CCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSCC-TTTHHHHHTSTTCCEEEES
T ss_pred HcCCEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCC-HHHHHHHHcCCCCCeeEec
Confidence 112444433 333 6643 4455566666666664 258999999998 59999998 6779999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
++-.+
T Consensus 234 gAsL~ 238 (252)
T 2btm_A 234 GASLE 238 (252)
T ss_dssp GGGSS
T ss_pred HHHhC
Confidence 99887
|
| >2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.013 Score=52.75 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=77.6
Q ss_pred HHHHHHHcCCcEEEecCC----Chhh----HHHHHHHHHHcCCCeEEEeCCCChHHHHHH----------HHH-h----C
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEE----TESLQKEAMKNKIELVLFTTPTTPTDRMKA----------IVE-A----S 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee----~~~~~~~~~~~gi~~I~lisp~t~~eri~~----------i~~-~----a 215 (311)
-...+++.|++.+|+..- .+.| ..+-...+.++|+.+|+-+.- +-++|-.- ..+ . .
T Consensus 73 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-tleere~g~~~t~~vv~~Ql~~l~~~~~ 151 (233)
T 2jgq_A 73 TSKHLEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKNFKIVYCIGE-ELTTREKGFKAVKEFLSEQLENIDLNYP 151 (233)
T ss_dssp BHHHHHHTTCCEEEECCHHHHHTTCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHHCHHHHHHHHHHHHTTSCTTCT
T ss_pred CHHHHHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHhcCchhHHHHHHHHHHhhhhhcc
Confidence 456789999999999631 1122 222455678899998876664 44455321 001 1 1
Q ss_pred CceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhHhhc
Q 021527 216 EGFVYLVS--SIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVA-GWGADGVIVGSAMVK 284 (311)
Q Consensus 216 ~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSaiv~ 284 (311)
.-.|-|.+ ..| ||.. ..++...+..+.+|+.. +++|+.|++|+. +++.+++ .-+.||+-||++-.+
T Consensus 152 ~~vIAYEPvWAIG-TG~~-At~e~a~ev~~~IR~~l~~~vrIlYGGSV~~-~N~~~l~~~~diDG~LVGgAsl~ 222 (233)
T 2jgq_A 152 NLVVAYEPIWAIG-TKKS-ASLEDIYLTHGFLKQILNQKTPLLYGGSVNT-QNAKEILGIDSVDGLLIGSASWE 222 (233)
T ss_dssp TEEEEECCGGGTT-C--C-CCHHHHHHHHHHHHHHSCTTSCEEEESSCCT-TTHHHHHTSTTCCEEEESGGGGS
T ss_pred ceEEEEeCHHHhC-CCCC-CCHHHHHHHHHHHHHHHhcCCcEEEcCCcCh-hhHHHHhcCCCCCeeEecHHHhC
Confidence 22333322 333 6743 45666788888888875 589999999985 6666654 667999999999887
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.031 Score=52.85 Aligned_cols=181 Identities=15% Similarity=0.190 Sum_probs=104.4
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. -++||+.-+-.|
T Consensus 47 g~ID~~~l~~lv~~li~~Gv~Gl~v~GtT----GE~~~------------Ls~eEr~~vi~~~ve~~~grvpViaGvg~~ 110 (343)
T 2v9d_A 47 GQLDKPGTAALIDDLIKAGVDGLFFLGSG----GEFSQ------------LGAEERKAIARFAIDHVDRRVPVLIGTGGT 110 (343)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSCEEESSTT----TTGGG------------SCHHHHHHHHHHHHHHHTTSSCEEEECCSS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccc----cChhh------------CCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 55667899999999999999999874111 11111 3445555566655543 368998876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+|++++. - ...++..+ |...+...++.++++=.| +.+.+-+.++++.-..+
T Consensus 111 st~--eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~~pnI 188 (343)
T 2v9d_A 111 NAR--ETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNI 188 (343)
T ss_dssp CHH--HHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHHHCTTE
T ss_pred CHH--HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHHhCCCE
Confidence 321 12356777889999999883 1 12245554 455566668877665333 23456666666233455
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhh-cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKE-SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~-~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+|. ...+.++++..+. ..+.-|+.|.. +.+-..+..|+||+|-|++
T Consensus 189 vgiKd---ssgd----~~~~~~l~~~~~~~~~~f~v~~G~D----~~~l~~l~~Ga~G~is~~a 241 (343)
T 2v9d_A 189 IGIKD---TIDS----VAHLRSMIHTVKGAHPHFTVLCGYD----DHLFNTLLLGGDGAISASG 241 (343)
T ss_dssp EEEEE---CCSC----HHHHHHHHHHHHHHCTTCEEEESSG----GGHHHHHHTTCCEECCGGG
T ss_pred EEEEe---CCCC----HHHHHHHHHhcCCCCCCEEEEECcH----HHHHHHHHCCCCEEEeCHH
Confidence 44311 1121 1122233333221 02455666643 3455666789999999875
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.1 Score=48.33 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=106.6
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+. |-+= ...-.+.++-.++++.+.+. -++||+.-+-.|
T Consensus 30 g~iD~~~l~~lv~~li~~Gv~Gl~v~---------GtTG-------E~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~ 93 (307)
T 3s5o_A 30 AEVDYGKLEENLHKLGTFPFRGFVVQ---------GSNG-------EFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCE 93 (307)
T ss_dssp SCBCHHHHHHHHHHHTTSCCSEEEES---------SGGG-------TGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEC---------cccc-------chhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCC
Confidence 45667899999999999999999885 2110 00114556666777777654 368988865544
Q ss_pred chhccCHHHHHHHHHHcCCcEEEe--cCC-----ChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVV--PDV-----PLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASE 216 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGvii--pDl-----p~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~ 216 (311)
... ..-+..+.+.++|+|++++ |-. ..++..+ |...++..++..+++=.| +.+.+-+.++++ -.
T Consensus 94 ~t~--~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~p 170 (307)
T 3s5o_A 94 STQ--ATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQ-HP 170 (307)
T ss_dssp SHH--HHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT-ST
T ss_pred CHH--HHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhc-CC
Confidence 222 1235677889999999988 322 2344444 455566678877765433 234566666664 34
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.++.+=. .+| ++ ..+.++.+.+ +.-|+.|.. +.+-..+..|+||+|-|++
T Consensus 171 nIvgiKd---ssg-------d~-~~~~~~~~~~~~~~f~v~~G~d----~~~l~~l~~G~~G~is~~a 223 (307)
T 3s5o_A 171 NIVGMXD---SGG-------DV-TRIGLIVHKTRKQDFQVLAGSA----GFLMASYALGAVGGVCALA 223 (307)
T ss_dssp TEEEEEE---CSC-------CH-HHHHHHHHHTTTSSCEEEESSG----GGHHHHHHHTCCEEECGGG
T ss_pred CEEEEEc---CCC-------CH-HHHHHHHHhccCCCeEEEeCcH----HHHHHHHHcCCCEEEechh
Confidence 5554421 112 12 2344443322 345555543 3566677799999998876
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.1 Score=48.38 Aligned_cols=176 Identities=14% Similarity=0.153 Sum_probs=103.4
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. -++||+.-+-.|
T Consensus 27 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtT----GE~~~------------Ls~eEr~~v~~~~~~~~~grvpViaGvg~~ 90 (303)
T 2wkj_A 27 QALDKASLRRLVQFNIQQGIDGLYVGGST----GEAFV------------QSLSEREQVLEIVAEEAKGKIKLIAHVGCV 90 (303)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSEEEESSTT----TTGGG------------SCHHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECeec----cChhh------------CCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 55667889999999999999999884111 11211 3455555666665543 368998876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcC-CCeEEEeCC-----CChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNK-IELVLFTTP-----TTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~g-i~~I~lisp-----~t~~eri~~i~~~a~g 217 (311)
... ..-+..+.+.++|+||+++. - ...++..+ |...+...+ +.++++=.| +.+.+-+.++++ -..
T Consensus 91 ~t~--~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~La~-~pn 167 (303)
T 2wkj_A 91 STA--ESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVT-LPG 167 (303)
T ss_dssp SHH--HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHHHHHHT-STT
T ss_pred CHH--HHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHHHHHhc-CCC
Confidence 321 12356778899999999883 1 12245554 445555566 877765332 234566666654 344
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+=. .+| ++ ..+.++++.. +..|+.|.. +.+-..+..|+||+|-|++
T Consensus 168 IvgiK~---s~g-------d~-~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~a 217 (303)
T 2wkj_A 168 VGALXQ---TSG-------DL-YQMEQIRREHPDLVLYNGYD----NIFASGLLAGADGGIGSTY 217 (303)
T ss_dssp EEEEEE---CCC-------CH-HHHHHHHHHCTTCEEEECCG----GGHHHHHHHTCCEEEETTH
T ss_pred EEEEeC---CCC-------CH-HHHHHHHHhCCCeEEEeCcH----HHHHHHHHCCCCEEEeCHH
Confidence 443311 111 11 2344443322 445555543 3466667789999999966
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.26 Score=46.25 Aligned_cols=204 Identities=15% Similarity=0.200 Sum_probs=127.7
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
..+.|+..++.| -++-.|= -.+++...-++++.++.+..+|-=-- .| .+ .. .| .+.+..
T Consensus 6 ~~~ll~~A~~~~-yAV~AfN---v~n~e~~~Ail~AAee~~sPvIlq~s-------~g-~~----~y---~g--~~~~~~ 64 (323)
T 2isw_A 6 LRQMLGEARKHK-YGVGAFN---VNNMEQIQGIMKAVVQLKSPVILQCS-------RG-AL----KY---SD--MIYLKK 64 (323)
T ss_dssp HHHHHHHHHHTT-CCEEEEE---CCSHHHHHHHHHHHHHTTCCEEEEEE-------HH-HH----HH---TT--THHHHH
T ss_pred HHHHHHHHHHCC-ceEEEEe---eCCHHHHHHHHHHHHHhCCCEEEECC-------hh-HH----Hh---CC--HHHHHH
Confidence 467777766554 4554454 45678999999999999998764321 12 00 00 12 122334
Q ss_pred HHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE----EE
Q 021527 130 MLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV----LF 198 (311)
Q Consensus 130 ~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I----~l 198 (311)
+++...++ .++||.+-. -+..-.+.+..+.++|.+.+.+ ..+|+|| ..++.+.++++|+.+= .+
T Consensus 65 ~v~~aa~~~~~VPValHl-----DHg~~~e~i~~ai~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~v 139 (323)
T 2isw_A 65 LCEAALEKHPDIPICIHL-----DHGDTLESVKMAIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARSVSVEAELGTL 139 (323)
T ss_dssp HHHHHHHHCTTSCEEEEE-----EEECSHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred HHHHHHHhcCCCcEEEEC-----CCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 56555556 789998863 1222356788999999999988 4688887 6778888888876421 00
Q ss_pred e---------CCCChHHHHHHHHHhCCceEEE-E---ecCCccC--CCCC--CCchHHHHHHHHhhcCCCcEEE--ee--
Q 021527 199 T---------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTG--ARAS--ISGHVQTLLREIKESSTKPVAV--GF-- 257 (311)
Q Consensus 199 i---------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG--~~~~--~~~~~~~~l~~vk~~~~~Pv~v--Gf-- 257 (311)
- .--|.++...+..+. .|.+.+ + +..|.+- .... ++. +.|+++++.+++|++. |.
T Consensus 140 gg~Ed~v~~~~~yTdPeea~~Fv~~-TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~---~~L~~I~~~~~vpLVlHGgSsv 215 (323)
T 2isw_A 140 GGIEEDVQNTVQLTEPQDAKKFVEL-TGVDALAVAIGTSHGAYKFKSESDIRLAI---DRVKTISDLTGIPLVMHGSSSV 215 (323)
T ss_dssp ----------CCCCCHHHHHHHHHH-HCCSEEEECSSCCSSSBCCCC----CCCC---HHHHHHHHHHCSCEEECSCCCC
T ss_pred cCCccCcccccccCCHHHHHHHHHH-HCCCEEEEecCccccccCCCCCcccccCH---HHHHHHHHHhCCCeEEECCCCC
Confidence 0 011444555555553 343344 2 3344332 1112 222 5688888888999877 44
Q ss_pred -------------------CCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 258 -------------------GISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 258 -------------------GIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|+. .|++++..+.|.-=+=|+|.+-.
T Consensus 216 p~~~~~~~~~~gg~~~~~~Gvp-~e~i~~ai~~GV~KiNi~Tdl~~ 260 (323)
T 2isw_A 216 PKDVKDMINKYGGKMPDAVGVP-IESIVHAIGEGVCKINVDSDSRM 260 (323)
T ss_dssp CHHHHHHHHHTTCCCTTCBCCC-HHHHHHHHHTTEEEEEECHHHHH
T ss_pred CHHHHHHHHHhccccccCCCCC-HHHHHHHHHCCCeEEEEChHHHH
Confidence 776 69999999999888889887744
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.015 Score=53.97 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=70.2
Q ss_pred HHHHHHHcCCcEEEec-CCC----------hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh--CCceEEEEecC
Q 021527 159 FMSTVRDIGIRGLVVP-DVP----------LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA--SEGFVYLVSSI 225 (311)
Q Consensus 159 fi~~~~~aGadGviip-Dlp----------~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~--a~gfiY~vs~~ 225 (311)
-++.+.+.|||-|=+. ++. .+|...+++.|....+++|+-..--+.++ +...++. ..|..|+=+.+
T Consensus 131 Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~ee-i~~A~~ia~eaGADfVKTST 209 (288)
T 3oa3_A 131 EAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADE-IIAGCVLSSLAGADYVKTST 209 (288)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHH-HHHHHHHHHHTTCSEEECCC
T ss_pred HHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHH-HHHHHHHHHHcCCCEEEcCC
Confidence 4567888999987542 321 12344455555443344443322223333 3333332 35777776666
Q ss_pred CccCCCCCCCchHHHHHHHHhh--cCCCcEEEeeCCCCHHHHHHHHHcCCc--EEEEhhHh
Q 021527 226 GVTGARASISGHVQTLLREIKE--SSTKPVAVGFGISKPEHVQQVAGWGAD--GVIVGSAM 282 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~--~~~~Pv~vGfGIst~e~v~~v~~~GAD--GvIVGSai 282 (311)
|.++. +...+..++++++.+ ..++||-+.+||++.+++.+++++||+ |.--|-+|
T Consensus 210 Gf~~~--GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~RiGtS~g~~I 268 (288)
T 3oa3_A 210 GFNGP--GASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGASAGVKI 268 (288)
T ss_dssp SSSSC--CCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEEEESCHHHH
T ss_pred CCCCC--CCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeehhhHHHH
Confidence 65421 222222345666543 246999999999999999999999999 66333333
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.069 Score=53.09 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.+|++.+.+..-.++-+.+.. +....+.+.++++|+.. ++||+ ..+|.+.++++.+.++|||+++||
T Consensus 258 ~era~aLveaGvd~I~Id~a~-------g~~~~v~~~i~~i~~~~~~~~vi-~g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 258 MTRIDALVKASVDAIVLDTAH-------GHSQGVIDKVKEVRAKYPSLNII-AGNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp HHHHHHHHHTTCSEEEEECSC-------TTSHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhhccceEEecccc-------cchhhhhhHHHHHHHhCCCceEE-eeeeccHHHHHHHHHhCCCEEEEC
Confidence 466666666444444433322 12345678899999876 57885 457889999999999999999984
|
| >2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.011 Score=54.12 Aligned_cols=122 Identities=19% Similarity=0.288 Sum_probs=77.0
Q ss_pred HHHHHHHcCCcEEEecCC----Chhh----HHHHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEE----TESLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee----~~~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~---- 214 (311)
-...+++.|++.+|+..- .+.| ...-...+.++|+.+|+-+.- +-++| ++...+.
T Consensus 78 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pIvCvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 156 (259)
T 2i9e_A 78 SPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGLKVIACIGE-TLEEREAGKTEEVVFRQTKAIAAKVNDW 156 (259)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHcCCCEEEECchhhhhhcCCCHHHHHHHHHHHHHCCCeEEEEcCC-cHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 456789999999999631 1122 333455678899998877764 33433 2222211
Q ss_pred CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhH
Q 021527 215 SEGFVYLVS--SIGVTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVA-GWGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSa 281 (311)
..-.|-|.+ ..| ||.. ..++...+..+.+|+.. +++|+.|++|+. +++.+++ .-+.||+-||++
T Consensus 157 ~~~vIAYEPvWAIG-TG~~-Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~~-~N~~~l~~~~diDG~LVGgA 233 (259)
T 2i9e_A 157 SNVVIAYEPVWAIG-TGKT-ATPQQAQDVHKALRQWICENIDAKVGNSIRIQYGGSVTA-ANCKELASQPDIDGFLVGGA 233 (259)
T ss_dssp TTEEEEECCGGGTT-SSSC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEECSCCCT-TTHHHHHTSTTCCEEEESGG
T ss_pred cCEEEEEcCHHHcC-CCCC-CCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCH-hhHHHHhcCCCCCeeeechH
Confidence 122344432 333 6743 44556667677777421 479999999984 6666655 567999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 234 sL~ 236 (259)
T 2i9e_A 234 SLK 236 (259)
T ss_dssp GGS
T ss_pred hhC
Confidence 887
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.048 Score=59.38 Aligned_cols=203 Identities=12% Similarity=0.067 Sum_probs=119.6
Q ss_pred HHHHHHHcCCccEEEEE-------eCCC--CChhhHHHHHHHHHHC--CCCEEEE-cCCCCCCCCChHHHHHHHHHHHHc
Q 021527 53 TFTRLKKQGKVALIPYI-------TAGD--PDLSTTAEALKLLDSC--GSDIIEL-GVPYSDPLADGPVIQAAATRSLAR 120 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi-------~~G~--P~~~~~~e~~~~L~~~--GaD~IEl-G~PfsDP~aDGp~Iq~a~~~Al~~ 120 (311)
.|.+..+..++..|.=. .++. -..++.+++++.|+++ |...||. | |.+++.. .+.+
T Consensus 522 ~~~~~~~~~~~v~I~DtTlRDG~Qs~~~~r~~~~~kl~ia~~L~~~~~G~~~lE~~G---------ga~~e~~-~~~~-- 589 (1150)
T 3hbl_A 522 GVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWG---------GATFDVA-YNFL-- 589 (1150)
T ss_dssp HHHHHHTTCSSBEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHTTTCSEEEEEE---------TTHHHHH-HHTS--
T ss_pred HHHHHHHhCCceEEEECccchhhccCCCcCCCHHHHHHHHHHHHHhhCCCcEEeecC---------CceEEec-cccc--
Confidence 45554444455444322 2333 4567899999999998 8888887 4 3344332 1111
Q ss_pred CCCHHHHHHHHHHhhcc-CCCcEEEEecC-cch-----hccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHc
Q 021527 121 GTNFNAILSMLKEVVPQ-MSCPIALFTYY-NPI-----LKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKN 191 (311)
Q Consensus 121 G~~~~~~~~~i~~ir~~-~~iPiilm~Y~-n~i-----~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~ 191 (311)
+-+- ++.++.+++. .++++..+.-. |.+ -....++|++.+.++|+|.+-+.|-.- .....+....++.
T Consensus 590 ~e~~---~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~~v~~a~~~Gvd~irif~~~sd~~~~~~~~~~~~e~ 666 (1150)
T 3hbl_A 590 KENP---WERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEA 666 (1150)
T ss_dssp CCCH---HHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHHHHHHHHHHHHHTTCCEEEEECTTCCGGGGHHHHHHHHHT
T ss_pred CCCH---HHHHHHHHHhCCCCeEEEEeccccccccccCCchhHHHHHHHHHhCCcCEEEEEeeCCHHHHHHHHHHHHHHH
Confidence 1111 3455555543 46676655411 211 111157899999999999998876432 3355667777888
Q ss_pred CCCeEEEeCCC-----------ChHHH----HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE-
Q 021527 192 KIELVLFTTPT-----------TPTDR----MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV- 255 (311)
Q Consensus 192 gi~~I~lisp~-----------t~~er----i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v- 255 (311)
|......+.++ ++.+. .+++.+..-..+++....|. ..|..+.++++.+|+.+++||-+
T Consensus 667 g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~-----~~P~~~~~lv~~l~~~~~~~i~~H 741 (1150)
T 3hbl_A 667 GKISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGL-----LKPKAAYELIGELKSAVDLPIHLH 741 (1150)
T ss_dssp TCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHHTTCSEEEEEETTCC-----CCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred hhheeEEEeecccccChhhcCCCCHHHHHHHHHHHHHcCCCeeeEcCccCC-----CCHHHHHHHHHHHHHhcCCeEEEE
Confidence 85443333332 22333 33333333445666665543 34667889999999988888876
Q ss_pred ---eeCCCCHHHHHHHHHcCCcEE
Q 021527 256 ---GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 256 ---GfGIst~e~v~~v~~~GADGv 276 (311)
.+|... .+....+++|||.|
T Consensus 742 ~Hnt~G~a~-An~laA~~aGa~~v 764 (1150)
T 3hbl_A 742 THDTSGNGL-LTYKQAIDAGVDII 764 (1150)
T ss_dssp ECBTTSCHH-HHHHHHHHTTCSEE
T ss_pred eCCCCcHHH-HHHHHHHHhCCCEE
Confidence 345543 45667778999876
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.027 Score=52.96 Aligned_cols=135 Identities=11% Similarity=0.109 Sum_probs=93.2
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCc
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCP 141 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iP 141 (311)
.+-.|-+.|..+.+.+.+.++.+.+.|.+.+++-+- .+ +.+...+.++.+|+.+ ++|
T Consensus 133 ~vp~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g------~~---------------~~~~~~e~v~avr~a~g~~~~ 191 (359)
T 1mdl_A 133 PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIG------YP---------------ALDQDLAVVRSIRQAVGDDFG 191 (359)
T ss_dssp CEEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECC------CS---------------SHHHHHHHHHHHHHHHCSSSE
T ss_pred CeeeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecC------CC---------------CHHHHHHHHHHHHHHhCCCCE
Confidence 344565666667788999999999999999998421 11 2334456778887754 677
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+.+-. |. -+..+++.++.+.+.++|+..+- .|
T Consensus 192 l~vDa--n~------------------------~~~~~~a~~~~~~l~~~~i~~iE--~P-------------------- 223 (359)
T 1mdl_A 192 IMVDY--NQ------------------------SLDVPAAIKRSQALQQEGVTWIE--EP-------------------- 223 (359)
T ss_dssp EEEEC--TT------------------------CSCHHHHHHHHHHHHHHTCSCEE--CC--------------------
T ss_pred EEEEC--CC------------------------CCCHHHHHHHHHHHHHhCCCeEE--CC--------------------
Confidence 76642 21 11236676777777888876441 11
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
++++..+.++++|+.+++||+.+-.+.++++++++++.| +|++.+.
T Consensus 224 ------------~~~~~~~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik 270 (359)
T 1mdl_A 224 ------------TLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPD 270 (359)
T ss_dssp ------------SCTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred ------------CChhhHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeec
Confidence 111224568889888999999999999999999998776 7998774
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.11 Score=47.39 Aligned_cols=216 Identities=19% Similarity=0.200 Sum_probs=119.4
Q ss_pred EEEeCCC---CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 67 PYITAGD---PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 67 ~yi~~G~---P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
+|+.+|- -|.+...+.++.+.++|+|++-++.. +|-.. |. -..|.. ++-++.+++++++.++|++
T Consensus 24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~~~f--kprts-~~--------~~~g~~-~egl~~l~~~~~~~Gl~~~ 91 (262)
T 1zco_A 24 FTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGGAF--KPRTS-PY--------SFQGYG-EKALRWMREAADEYGLVTV 91 (262)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSS--CCCSS-TT--------SCCCCT-HHHHHHHHHHHHHHTCEEE
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEEec--ccCCC-cc--------cccCcc-HHHHHHHHHHHHHcCCcEE
Confidence 5665543 13578999999999999999998853 33211 00 001222 5567888888888999988
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC-hHHHHHHHHH----hCCce
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT-PTDRMKAIVE----ASEGF 218 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t-~~eri~~i~~----~a~gf 218 (311)
--.+ ++ . -++.+.+. +|.+-|+--..+.. .+..++.+.|.. |.+-+... +.+.+...++ ....-
T Consensus 92 te~~-d~---~----~~~~l~~~-vd~~kIga~~~~n~-~ll~~~a~~~kP-V~lk~G~~~t~~e~~~Av~~i~~~Gn~~ 160 (262)
T 1zco_A 92 TEVM-DT---R----HVELVAKY-SDILQIGARNSQNF-ELLKEVGKVENP-VLLKRGMGNTIQELLYSAEYIMAQGNEN 160 (262)
T ss_dssp EECC-CG---G----GHHHHHHH-CSEEEECGGGTTCH-HHHHHHTTSSSC-EEEECCTTCCHHHHHHHHHHHHTTTCCC
T ss_pred EeeC-CH---H----hHHHHHhh-CCEEEECcccccCH-HHHHHHHhcCCc-EEEecCCCCCHHHHHHHHHHHHHCCCCe
Confidence 7432 21 1 23444455 88888874333333 344455557754 55555553 3333222222 12223
Q ss_pred EEEEecCCc---cCCCCCCCchHHHHHHHHhhcCCCcEEEe----eCCCC--HHHHHHHHHcCCcEEEEhhHhh--chhh
Q 021527 219 VYLVSSIGV---TGARASISGHVQTLLREIKESSTKPVAVG----FGISK--PEHVQQVAGWGADGVIVGSAMV--KLLG 287 (311)
Q Consensus 219 iY~vs~~G~---TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG----fGIst--~e~v~~v~~~GADGvIVGSaiv--~~~~ 287 (311)
+.+.-+ |. ++.. ....+ ...+..+|+.+++||++. .|.+. +.-+......||||++|=+.+. +.+.
T Consensus 161 i~L~~R-G~~~~~~y~-~~~v~-L~ai~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~~d~al~ 237 (262)
T 1zco_A 161 VILCER-GIRTFETAT-RFTLD-ISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPEPEKALS 237 (262)
T ss_dssp EEEEEC-CBCCSCCSS-SSBCC-TTHHHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSSGGGCSS
T ss_pred EEEEEC-CCCCCCCcC-hhhcC-HHHHHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccCC
Confidence 333222 31 2221 11112 245777888788998663 23321 1335556789999999987753 2222
Q ss_pred hcCCchhHHHHHHHHHHHHHhh
Q 021527 288 EAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
++. ..-..+++++++++++..
T Consensus 238 D~~-~sl~p~~~~~l~~~i~~~ 258 (262)
T 1zco_A 238 DSQ-QQLTFDDFLQLLKELEAL 258 (262)
T ss_dssp CTT-TCBCHHHHHHHHHHHHHT
T ss_pred hhh-cCCCHHHHHHHHHHHHHH
Confidence 221 111256788888888753
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.036 Score=51.72 Aligned_cols=176 Identities=10% Similarity=0.047 Sum_probs=103.8
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|++.+.+.++.+.++|+|.|-+.---. +++ -.+.++-.++++.+.+. -++||+.-+-.|
T Consensus 28 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTG----E~~------------~Ls~eEr~~v~~~~v~~~~grvpViaGvg~~ 91 (316)
T 3e96_A 28 GSIDWHHYKETVDRIVDNGIDVIVPCGNTS----EFY------------ALSLEEAKEEVRRTVEYVHGRALVVAGIGYA 91 (316)
T ss_dssp CCBCHHHHHHHHHHHHTTTCCEECTTSGGG----TGG------------GSCHHHHHHHHHHHHHHHTTSSEEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCcccc----Ccc------------cCCHHHHHHHHHHHHHHhCCCCcEEEEeCcC
Confidence 456678999999999999999998851110 111 13555556666666543 368988875323
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--CC---ChhhHHH-HHHHHHHcCCCeEEEe-CCCChHHHHHHHHHhCCceEEEE
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--DV---PLEETES-LQKEAMKNKIELVLFT-TPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--Dl---p~ee~~~-~~~~~~~~gi~~I~li-sp~t~~eri~~i~~~a~gfiY~v 222 (311)
+- ..-+..+.+.++|+|++++. -. ..++..+ |...+...++.++++= .+..+.+-+.++++ -..++.+=
T Consensus 92 t~---~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La~-~pnIvgiK 167 (316)
T 3e96_A 92 TS---TAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLAP-LQNLVGVK 167 (316)
T ss_dssp HH---HHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHTT-CTTEEEEE
T ss_pred HH---HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHc-CCCEEEEE
Confidence 21 22457778899999999983 21 2245544 5555666788776653 44455566666653 34454431
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCC---Cc-EEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESST---KP-VAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~---~P-v~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
. .+| ++ ..+.++.+.++ .- ++.|..-. .+...+..|++|+|-|++
T Consensus 168 d---ssg-------d~-~~~~~~~~~~~~~~f~~v~~G~d~~---~~~~~l~~G~~G~is~~a 216 (316)
T 3e96_A 168 Y---AIN-------DL-PRFAKVVRSIPEEHQIAWICGTAEK---WAPFFWHAGAKGFTSGLV 216 (316)
T ss_dssp E---CCC-------CH-HHHHHHHTTSCGGGCCEEEETTCTT---THHHHHHHTCCEEEESGG
T ss_pred e---CCC-------CH-HHHHHHHHhcCCCCceEEEeCChHH---HHHHHHHCCCCEEEechh
Confidence 1 111 12 23555555442 33 55554321 244456689999999876
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.02 Score=50.99 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=68.8
Q ss_pred HHHHHHHcCCcEEEec-CCC----------hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhC--CceEEEEecC
Q 021527 159 FMSTVRDIGIRGLVVP-DVP----------LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEAS--EGFVYLVSSI 225 (311)
Q Consensus 159 fi~~~~~aGadGviip-Dlp----------~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a--~gfiY~vs~~ 225 (311)
-++.+.+.|+|.|-+. ++. .+|...+++.|.+.++++|+-...-+ ++.+...++.+ .|..|+=+.+
T Consensus 76 e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~-~e~i~~a~~ia~eaGADfVKTsT 154 (220)
T 1ub3_A 76 EAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFS-PEEIARLAEAAIRGGADFLKTST 154 (220)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSC-HHHHHHHHHHHHHHTCSEEECCC
T ss_pred HHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHHHHHhCCCEEEeCC
Confidence 4567888999987552 222 12344455555444444443222223 34344444432 4666776666
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCc--EEEEhhHh
Q 021527 226 GVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGAD--GVIVGSAM 282 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GAD--GvIVGSai 282 (311)
|.+.. +...+..+.++++- ..++||-+.+||++.+++.++.++||+ |+-.|-.|
T Consensus 155 Gf~~~--gat~~dv~~m~~~v-g~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~I 210 (220)
T 1ub3_A 155 GFGPR--GASLEDVALLVRVA-QGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVAL 210 (220)
T ss_dssp SSSSC--CCCHHHHHHHHHHH-TTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHH
T ss_pred CCCCC--CCCHHHHHHHHHhh-CCCCeEEEECCCCCHHHHHHHHHCCCcccchhHHHHH
Confidence 65421 11222222333322 346899999999999999999999999 77333333
|
| >3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0055 Score=55.90 Aligned_cols=122 Identities=19% Similarity=0.350 Sum_probs=76.3
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHH------------HHHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDR------------MKAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~---- 214 (311)
-...+++.|++.+|+..- .+.|..++ ...+.++|+.+|+-+.- +-++| ++.....
T Consensus 81 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pIlCvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 159 (255)
T 3qst_A 81 TVPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENGMKIIYCCGE-HLSEREAGKASEFVSAQIEKMIPAIPAG 159 (255)
T ss_dssp CHHHHHTTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHGGGSCTT
T ss_pred CHHHHHHcCCCEEEECchhhhhhcCCCHHHHHHHHHHHHHCCCeEEEEcCC-cHHHHHcCCHHHHHHHHHHHHHccCCHH
Confidence 456789999999999731 11233333 56778899998887764 44555 2333211
Q ss_pred --CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEh
Q 021527 215 --SEGFVYLVS--SIGVTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVA-GWGADGVIVG 279 (311)
Q Consensus 215 --a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~-~~GADGvIVG 279 (311)
..-.|-|.+ ..| ||.. ..+....+..+.+|+.. +++|++|++|+ ++++.+++ .-+.||+-||
T Consensus 160 ~~~~~vIAYEPvWAIG-TG~~-Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVG 236 (255)
T 3qst_A 160 KWDDVVIAYEPIWAIG-TGKV-ASTQDAQEMCKVIRDILAAKVGADIANKVRILYGGSVK-PNNCNELAACPDVDGFLVG 236 (255)
T ss_dssp CGGGEEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCC-TTTHHHHHHSTTCCEEEEC
T ss_pred HhCCEEEEECCHHHhc-CCCC-CCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCcC-HhHHHHHhcCCCCCEEEee
Confidence 112333332 233 5542 33455666666666541 47999999998 56776655 5679999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
+|-.+
T Consensus 237 gASL~ 241 (255)
T 3qst_A 237 GASLE 241 (255)
T ss_dssp GGGGS
T ss_pred HHHhh
Confidence 98776
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.08 Score=50.95 Aligned_cols=204 Identities=15% Similarity=0.193 Sum_probs=116.4
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCC--CCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVP--YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~P--fsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
=+.+...+.++.+.++|+|+|=++.- -+.|+. -.|... +-+..+++++++.++|++--.+ +
T Consensus 153 es~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~-------------f~gl~~-egl~~L~~~~~~~Gl~~~te~~-d-- 215 (385)
T 3nvt_A 153 ESYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYD-------------FQGLGL-EGLKILKRVSDEYGLGVISEIV-T-- 215 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTS-------------CCCCTH-HHHHHHHHHHHHHTCEEEEECC-S--
T ss_pred CCHHHHHHHHHHHHHcCCCeEEcccccCCCChHh-------------hcCCCH-HHHHHHHHHHHHcCCEEEEecC-C--
Confidence 37789999999999999999998852 122220 013444 4567888888889999887432 2
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC-ChHHHHHHHHH----hC-CceEEEEecC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT-TPTDRMKAIVE----AS-EGFVYLVSSI 225 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~-t~~eri~~i~~----~a-~gfiY~vs~~ 225 (311)
. .-++.+.+. +|.+-|+--.... ..+...+.+.|.. |.+-+.. .+.+.+...++ .. ..++.|- .
T Consensus 216 -~----~~~~~l~~~-vd~lkIgs~~~~n-~~LL~~~a~~gkP-Vilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~--r 285 (385)
T 3nvt_A 216 -P----ADIEVALDY-VDVIQIGARNMQN-FELLKAAGRVDKP-ILLKRGLSATIEEFIGAAEYIMSQGNGKIILCE--R 285 (385)
T ss_dssp -G----GGHHHHTTT-CSEEEECGGGTTC-HHHHHHHHTSSSC-EEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEE--C
T ss_pred -H----HHHHHHHhh-CCEEEECcccccC-HHHHHHHHccCCc-EEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEE--C
Confidence 1 123344455 8988887332223 3466677788864 5555544 33333322222 22 2344443 2
Q ss_pred CccCC----CCCCCchHHHHHHHHhhcCCCcEEEe--eCCCCH----HHHHHHHHcCCcEEEEhhHhh--chhhhcCCch
Q 021527 226 GVTGA----RASISGHVQTLLREIKESSTKPVAVG--FGISKP----EHVQQVAGWGADGVIVGSAMV--KLLGEAQSPE 293 (311)
Q Consensus 226 G~TG~----~~~~~~~~~~~l~~vk~~~~~Pv~vG--fGIst~----e~v~~v~~~GADGvIVGSaiv--~~~~~~~~~~ 293 (311)
|++.. ...++ + ..+..+|+.+++||+++ -|+... .-.......||||++|=.-+. +.+.++.. .
T Consensus 286 G~s~yp~~~~~~ld--l-~~i~~lk~~~~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~~pd~a~~D~~~-s 361 (385)
T 3nvt_A 286 GIRTYEKATRNTLD--I-SAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDSAQ-Q 361 (385)
T ss_dssp CBCCSCCSSSSBCC--T-THHHHHHHHBSSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCSCGGGCSSCTTT-S
T ss_pred CCCCCCCCCccccC--H-HHHHHHHHhcCCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecCChhhcCCcccc-c
Confidence 33322 22222 2 34777888789999765 222111 224456679999999976433 22222111 1
Q ss_pred hHHHHHHHHHHHHHh
Q 021527 294 EGLKELEKFAKSLKS 308 (311)
Q Consensus 294 ~~~~~~~~~~~~l~~ 308 (311)
-..+++++++++++.
T Consensus 362 l~p~el~~lv~~i~~ 376 (385)
T 3nvt_A 362 MDIPEFEEFWNAILA 376 (385)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 125677777777765
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.18 Score=46.31 Aligned_cols=176 Identities=11% Similarity=0.116 Sum_probs=104.0
Q ss_pred CCCChhhHHHHHHHHHH-CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecC
Q 021527 72 GDPDLSTTAEALKLLDS-CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYY 148 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~-~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~ 148 (311)
|.-|.+.+.+.++.+.+ +|+|.|-+.---. ++ .-.+.++-.++++.+.+. -++||+.-+-.
T Consensus 19 g~iD~~~l~~lv~~li~~~Gv~gl~~~GttG----E~------------~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 82 (293)
T 1f6k_A 19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTG----EN------------FMLSTEEKKEIFRIAKDEAKDQIALIAQVGS 82 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTSCCSEEEESSGGG----TG------------GGSCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred CCcCHHHHHHHHHHHHhhCCCcEEEeCcccc----ch------------hhCCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 55677899999999999 9999998841110 11 113555555666665543 36899887655
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~g 217 (311)
|... ..-+..+.+.++|+|++++. - ...++..+ |...++..++..+++=.| ..+.+-+.++++ -..
T Consensus 83 ~~t~--~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~pn 159 (293)
T 1f6k_A 83 VNLK--EAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYK-NPK 159 (293)
T ss_dssp SCHH--HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHT-STT
T ss_pred CCHH--HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhc-CCC
Confidence 4322 12356777889999999883 1 12244444 455566678876655322 234566666654 344
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+=. .+| ++ ..+.++++.. +..|+.|.. +.+-..+..|+||+|-|++
T Consensus 160 IvgiK~---s~g-------d~-~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~~ 209 (293)
T 1f6k_A 160 VLGVKF---TAG-------DF-YLLERLKKAYPNHLIWAGFD----EMMLPAASLGVDGAIGSTF 209 (293)
T ss_dssp EEEEEE---CSC-------CH-HHHHHHHHHCTTSEEEECCG----GGHHHHHHTTCSEEEESTH
T ss_pred EEEEEE---CCC-------CH-HHHHHHHHhCCCeEEEECcH----HHHHHHHHCCCcEEEeCHH
Confidence 543311 111 11 2344444332 444555543 3566677799999999975
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.012 Score=54.22 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=40.9
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.++.+|+.+++||+...+|.++.|+.++..+|||+|.++.+...
T Consensus 110 ~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~ 154 (272)
T 3tsm_A 110 EFLTAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASVD 154 (272)
T ss_dssp HHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSC
T ss_pred HHHHHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEcccccC
Confidence 578999999999999998899999999999999999999988653
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.051 Score=50.05 Aligned_cols=176 Identities=15% Similarity=0.153 Sum_probs=102.8
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+. -++||+.-+-.|
T Consensus 17 g~iD~~~l~~lv~~li~~Gv~gl~~~Gtt----GE~~~------------Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~ 80 (292)
T 2ojp_A 17 GNVCRASLKKLIDYHVASGTSAIVSVGTT----GESAT------------LNHDEHADVVMMTLDLADGRIPVIAGTGAN 80 (292)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSTT----TTGGG------------SCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc----cchhh------------CCHHHHHHHHHHHHHHhCCCCcEEEecCCc
Confidence 55677899999999999999999884111 11211 3445555566655543 368988876544
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHHH-HHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETESL-QKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~~-~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+||+++. - ...++..++ ...+...++..+++=.| +.+.+-+.++++ -..+
T Consensus 81 ~t~--~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~pni 157 (292)
T 2ojp_A 81 ATA--EAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAK-VKNI 157 (292)
T ss_dssp SHH--HHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHT-STTE
T ss_pred cHH--HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHHc-CCCE
Confidence 221 12346667788999999883 1 122455544 45555567776655322 234465666654 2344
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+ .-.+| ++ ..+.++++.+ +..|+.|.. +.+-..+..|+||+|-|++
T Consensus 158 vgi---K~s~g-------d~-~~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~~ 207 (292)
T 2ojp_A 158 IGI---XEATG-------NL-TRVNQIKELVSDDFVLLSGDD----ASALDFMQYGGHGVISVTA 207 (292)
T ss_dssp EEC----CCSC-------CT-HHHHHHHTTSCTTSBCEESCG----GGHHHHHHTTCCEEEESGG
T ss_pred EEE---eCCCC-------CH-HHHHHHHHhcCCCEEEEECcH----HHHHHHHHCCCcEEEeCHH
Confidence 322 11111 12 3455555544 455666654 3455566799999999876
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.044 Score=52.63 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=37.1
Q ss_pred CchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 235 SGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+....+.++++|+.+ ++||++| ++.++++++.+.++|+|+++||
T Consensus 178 ~~~~~e~i~~ir~~~~~~pviv~-~v~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 178 STRIIELIKKIKTKYPNLDLIAG-NIVTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp SHHHHHHHHHHHHHCTTCEEEEE-EECSHHHHHHHHTTTCSEEEEC
T ss_pred hHHHHHHHHHHHHHCCCCeEEEc-CCCcHHHHHHHHhcCCCEEEEC
Confidence 345678899999988 8999885 4567999999999999999994
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.027 Score=57.61 Aligned_cols=172 Identities=12% Similarity=0.138 Sum_probs=93.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC----CCcEEEEecCcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM----SCPIALFTYYNP 150 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~----~iPiilm~Y~n~ 150 (311)
+.++-+++++.|++.|+|.||+|+|-+.| + =++.++++.+.. ++-+..++-..
T Consensus 91 s~eeKl~Ia~~L~~lGVd~IEaGfP~asp---~-------------------D~e~v~~i~~~~l~~~~~~i~aL~r~~- 147 (644)
T 3hq1_A 91 SPARKRRMFDLLVRMGYKEIEVGFPSASQ---T-------------------DFDFVREIIEQGAIPDDVTIQVLTQCR- 147 (644)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECTTTCH---H-------------------HHHHHHHHHHTTCSCTTCEEEEEEESC-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCh---h-------------------HHHHHHHHHhcCCCCCCeEEEEEecCC-
Confidence 35788999999999999999999988765 1 123555554431 34455554321
Q ss_pred hhccCHHHHHHHHHHcCCcEEEec------------CCChhhHHH----HHHHHHHcCCC-----eEEEeCC----CChH
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVP------------DVPLEETES----LQKEAMKNKIE-----LVLFTTP----TTPT 205 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviip------------Dlp~ee~~~----~~~~~~~~gi~-----~I~lisp----~t~~ 205 (311)
...+++-++.++.+|.+.|.+. ....||..+ ..+.+++++-+ .-+-.++ .++.
T Consensus 148 --~~did~a~eal~~a~~~~Vhif~stSd~h~~~~l~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~ 225 (644)
T 3hq1_A 148 --PELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTEL 225 (644)
T ss_dssp --HHHHHHHHHHHTTCSEEEEEEEEECCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCH
T ss_pred --HhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCH
Confidence 1113444555566787777662 233444322 22223333211 1122233 2445
Q ss_pred HHHHHHHHhC-----Cc-----eEEEEecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEE----eeCCCCHHHHHH
Q 021527 206 DRMKAIVEAS-----EG-----FVYLVSSIGVTGARASISGHVQTLLREIKESST----KPVAV----GFGISKPEHVQQ 267 (311)
Q Consensus 206 eri~~i~~~a-----~g-----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~v----GfGIst~e~v~~ 267 (311)
+.+.++++.. .| .+++....|. ..|..+.++++.+++... +|+-+ .+|... .+...
T Consensus 226 dfl~ev~~aa~eaG~~Gad~~~~I~LpDTvG~-----~tP~~~~~li~~l~~~v~~~~~v~l~vH~HND~GlAv-ANsla 299 (644)
T 3hq1_A 226 EYAKQVCDAVGEVIAPTPERPIIFNLPATVEM-----TTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAV-AAAEL 299 (644)
T ss_dssp HHHHHHHHHHHHHHCCCSSSCEEEEEEESSCC-----SCHHHHHHHHHHHHHHSTTGGGEEEEEEEBCTTSCHH-HHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCceeEEEecCCCcc-----cCHHHHHHHHHHHHHhcccccCceEEEecCCCCCcHH-HHHHH
Confidence 6554444431 12 3555554443 345667788888887652 34433 345543 34556
Q ss_pred HHHcCCcEEE
Q 021527 268 VAGWGADGVI 277 (311)
Q Consensus 268 v~~~GADGvI 277 (311)
.+++||+-|=
T Consensus 300 Av~AGA~~Vd 309 (644)
T 3hq1_A 300 GFAAGADRIE 309 (644)
T ss_dssp HHHTTCCEEE
T ss_pred HHHhCCCEEE
Confidence 6779999774
|
| >3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.012 Score=53.42 Aligned_cols=122 Identities=19% Similarity=0.299 Sum_probs=73.8
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHH------------HHHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDR------------MKAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~---- 214 (311)
-...+++.|++.+|+..- .+.|..++ ...+.++|+.+|+-+.- +-++| ++.....
T Consensus 79 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 157 (249)
T 3th6_A 79 SPGMIKDCGGQWVILGHSERRHVFKEDDVLIGEKIKHALESGLNVIACIGE-LLEDREAGRTEEVCFRQIKHIASNVKDW 157 (249)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHTTTCHHHHHHHHHHHHHTTCSCG
T ss_pred CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHhcCCHHHHHHHHHHHHHhchhhh
Confidence 456789999999999731 12233333 46778899998887764 43444 2222211
Q ss_pred CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----C------CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhH
Q 021527 215 SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES----S------TKPVAVGFGISKPEHVQQVA-GWGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----~------~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSa 281 (311)
..-.|-|.+ ..| ||.. ..+....+..+.+|+. . +++|++|++|+ ++++.+++ ..+.||+-||+|
T Consensus 158 ~~~vIAYEPvWAIG-TG~~-At~e~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVGgA 234 (249)
T 3th6_A 158 SKVVIAYEPVWAIG-TGKT-ATPDQAQEVHSKVRNWLSTNVSADVASKVRIQYGGSVN-AGNCKELGRKPDIDGFLVGGA 234 (249)
T ss_dssp GGEEEEECCTTTCC-C----CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCC-TTTHHHHHTSTTCCEEEECGG
T ss_pred cCEEEEECCcchhc-CCCC-CCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCccC-HhHHHHHhcCCCCCEEEeehH
Confidence 112333332 223 5542 3344556666666652 1 37999999998 46666655 567999999998
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 235 SL~ 237 (249)
T 3th6_A 235 SLK 237 (249)
T ss_dssp GGS
T ss_pred hhh
Confidence 776
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.077 Score=50.35 Aligned_cols=133 Identities=9% Similarity=0.086 Sum_probs=92.3
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~i 140 (311)
..+-.|.+.|..+.+.+.+.++.+.+.|.|.+++-+-. +++...+.++.+|+.+ ++
T Consensus 133 ~~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------------~~~~~~e~v~avr~a~g~d~ 190 (379)
T 2rdx_A 133 DGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGA----------------------DWQSDIDRIRACLPLLEPGE 190 (379)
T ss_dssp SSEEBCEECCCSCSHHHHHHHHHHHHTTCCEEEEECCS----------------------CHHHHHHHHHHHGGGSCTTC
T ss_pred CceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeccC----------------------CHHHHHHHHHHHHHhcCCCC
Confidence 34555777776677889999999999999999994211 2344567888998875 57
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
|+.+-. |. -+..+++.++.+.+.++|+ .+- .
T Consensus 191 ~l~vDa--n~------------------------~~~~~~a~~~~~~l~~~~i-~iE--~-------------------- 221 (379)
T 2rdx_A 191 KAMADA--NQ------------------------GWRVDNAIRLARATRDLDY-ILE--Q-------------------- 221 (379)
T ss_dssp EEEEEC--TT------------------------CSCHHHHHHHHHHTTTSCC-EEE--C--------------------
T ss_pred EEEEEC--CC------------------------CCCHHHHHHHHHHHHhCCe-EEe--C--------------------
Confidence 776632 21 1123556566666666665 330 0
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhh
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGS 280 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGS 280 (311)
.++ ..+.++++|+.+++||+.+..+.++++++++++.| +|.|.+.-
T Consensus 222 ------------P~~--~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~ 268 (379)
T 2rdx_A 222 ------------PCR--SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKI 268 (379)
T ss_dssp ------------CSS--SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEET
T ss_pred ------------CcC--CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence 111 13568889998999999999999999999998765 89998843
|
| >1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.008 Score=54.59 Aligned_cols=122 Identities=20% Similarity=0.294 Sum_probs=76.0
Q ss_pred HHHHHHHcCCcEEEecCC----Chhh----HHHHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEE----TESLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee----~~~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~---- 214 (311)
-...+++.|++.+|+..- .+.| ...-...+.++|+.+|+-+.- +-++| ++...+.
T Consensus 78 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 156 (247)
T 1ney_A 78 SVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGE-TLEEKKAGKTLDVVERQLNAVLEEVKDF 156 (247)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTTCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHcCCCEEEECChhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHCCCHHHHHHHHHHHHHhchhhh
Confidence 456789999999999631 1122 222445678899988876654 44555 1111111
Q ss_pred CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhH
Q 021527 215 SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQVA-GWGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSa 281 (311)
..-.|-|.+ ..| ||.. ..++...+..+.+|+. -+++|+.|++|+. +++.+++ ..+.||+-||++
T Consensus 157 ~~~vIAYEPvWAIG-TG~~-Atpe~a~evh~~IR~~l~~~~~~~va~~vrIlYGGSV~~-~N~~~l~~~~diDG~LVGgA 233 (247)
T 1ney_A 157 TNVVVAYEPVXAIG-TGLA-ATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANG-SNAVTFKDKADVDGFLVGGA 233 (247)
T ss_dssp TTEEEEECCGGGTT-TSCC-CCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCT-TTGGGGTTCTTCCEEEESGG
T ss_pred cCEEEEECChhhcC-CCCC-CCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCCcCH-hHHHHHHcCCCCCeeEeehH
Confidence 122344433 333 6643 4455666666667762 1489999999985 6665554 567999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 234 sL~ 236 (247)
T 1ney_A 234 SLK 236 (247)
T ss_dssp GGS
T ss_pred HHH
Confidence 887
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.056 Score=51.66 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=93.2
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~i 140 (311)
..+-.|.+.|..+.+.+.+.++.+.+.|.+.+++-+- .+++..++.++.+|+.+ ++
T Consensus 133 ~~vp~~~~~g~~~~e~~~~~a~~~~~~Gf~~vKik~g----------------------~~~~~~~e~v~avR~a~g~d~ 190 (397)
T 2qde_A 133 ERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAG----------------------GPLKADIAMVAEVRRAVGDDV 190 (397)
T ss_dssp SSEEBCEECCCSCHHHHHHHHHHHHHHTCSCEEEECC----------------------SCHHHHHHHHHHHHHHHCTTS
T ss_pred CCcceEEECCCCCHHHHHHHHHHHHHhhhhheeeccc----------------------CCHHHHHHHHHHHHHhhCCCC
Confidence 3455577777667788899999999999999998421 12334456777777653 67
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
++.+-. |. -+..+++.++.+.+.++|+..+- .|
T Consensus 191 ~l~vDa--n~------------------------~~~~~~a~~~~~~l~~~~i~~iE--qP------------------- 223 (397)
T 2qde_A 191 DLFIDI--NG------------------------AWTYDQALTTIRALEKYNLSKIE--QP------------------- 223 (397)
T ss_dssp CEEEEC--TT------------------------CCCHHHHHHHHHHHGGGCCSCEE--CC-------------------
T ss_pred EEEEEC--CC------------------------CCCHHHHHHHHHHHHhCCCCEEE--CC-------------------
Confidence 776642 21 11346666777777777776431 11
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
++++..+.++++++.+++||+.|-.+.++++++++++.| +|.+.+-
T Consensus 224 -------------~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 270 (397)
T 2qde_A 224 -------------LPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIK 270 (397)
T ss_dssp -------------SCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred -------------CChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEe
Confidence 112224568888888899999999999999999998655 7999884
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.24 Score=45.46 Aligned_cols=205 Identities=19% Similarity=0.217 Sum_probs=114.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCC--CCCC-CChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPY--SDPL-ADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~Pf--sDP~-aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
+.+...+.++.+.++|+|.+=+++-- +.|+ ..| .. ++-++++++++++.++|++--.+ ++
T Consensus 50 ~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g--------------~g-~~gl~~l~~~~~~~Gl~~~te~~-d~- 112 (276)
T 1vs1_A 50 SWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQG--------------LG-LEGLKLLRRAGDEAGLPVVTEVL-DP- 112 (276)
T ss_dssp CHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCC--------------CT-HHHHHHHHHHHHHHTCCEEEECC-CG-
T ss_pred CHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcC--------------CC-HHHHHHHHHHHHHcCCcEEEecC-CH-
Confidence 45789999999999999998776433 2221 122 21 46678889999899999877432 21
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC-hHHHHHH----HHHhCC-ceEEEEecC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT-PTDRMKA----IVEASE-GFVYLVSSI 225 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t-~~eri~~----i~~~a~-gfiY~vs~~ 225 (311)
.-++.+.+. +|.+-|+--..+... +.+++.+.|. +|.+-+..+ +.+.+.. +..... .++.+- .
T Consensus 113 ------~~~~~l~~~-vd~~kIgs~~~~n~~-ll~~~a~~~k-PV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~--R 181 (276)
T 1vs1_A 113 ------RHVETVSRY-ADMLQIGARNMQNFP-LLREVGRSGK-PVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVE--R 181 (276)
T ss_dssp ------GGHHHHHHH-CSEEEECGGGTTCHH-HHHHHHHHTC-CEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEE--C
T ss_pred ------HHHHHHHHh-CCeEEECcccccCHH-HHHHHHccCC-eEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEe--C
Confidence 123334445 788888743333333 4555556675 455666554 3333322 222222 344432 1
Q ss_pred CccCCC--CCCCchHHHHHHHHhhcCCCcEEE----eeCCCC--HHHHHHHHHcCCcEEEEhhHhhc--hhhhcCCchhH
Q 021527 226 GVTGAR--ASISGHVQTLLREIKESSTKPVAV----GFGISK--PEHVQQVAGWGADGVIVGSAMVK--LLGEAQSPEEG 295 (311)
Q Consensus 226 G~TG~~--~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst--~e~v~~v~~~GADGvIVGSaiv~--~~~~~~~~~~~ 295 (311)
|++... .....+ ...+..+|+.+++||++ +.|.+. +.-.......||||++|=+.+.- .+.++. ..-.
T Consensus 182 g~~~yp~y~~~~vd-l~~i~~lk~~~~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~~~d~a~~D~~-~sl~ 259 (276)
T 1vs1_A 182 GIRTFEPSTRFTLD-VAAVAVLKEATHLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPNPEEALSDAK-QQLT 259 (276)
T ss_dssp CBCCSCCSSSSBCB-HHHHHHHHHHBSSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCSSGGGCSSCGG-GCBC
T ss_pred CcCCCCCcCcchhC-HHHHHHHHHHhCCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcccCCCchh-cCCC
Confidence 332211 111122 24477788878899754 124321 23334445689999999876522 222211 1112
Q ss_pred HHHHHHHHHHHHhh
Q 021527 296 LKELEKFAKSLKSA 309 (311)
Q Consensus 296 ~~~~~~~~~~l~~~ 309 (311)
.+++++++++++..
T Consensus 260 p~~~~~lv~~i~~~ 273 (276)
T 1vs1_A 260 PGEFARLMGELRWH 273 (276)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888888753
|
| >2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.016 Score=52.71 Aligned_cols=122 Identities=19% Similarity=0.226 Sum_probs=75.4
Q ss_pred HHHHHHHcCCcEEEecCCC----hhh----HHHHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHHhC---
Q 021527 159 FMSTVRDIGIRGLVVPDVP----LEE----TESLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVEAS--- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp----~ee----~~~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~a--- 215 (311)
-...+++.|++.+|+..-- +.| ..+-...+.++|+.+|+-+.- +-++| ++...+.-
T Consensus 80 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 158 (251)
T 2vxn_A 80 SMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGE-TLQQREANQTAKVVLSQTSAIAAKLTKD 158 (251)
T ss_dssp BHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHHTTCCTG
T ss_pred CHHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 4567899999999996310 112 222445678899988876654 44555 11111111
Q ss_pred ---CceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----C------CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEh
Q 021527 216 ---EGFVYLVS--SIGVTGARASISGHVQTLLREIKES----S------TKPVAVGFGISKPEHVQQVA-GWGADGVIVG 279 (311)
Q Consensus 216 ---~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----~------~~Pv~vGfGIst~e~v~~v~-~~GADGvIVG 279 (311)
.-.|-|.+ ..| ||.. ..++...+..+.+|+. . +++|+.|++|+. +++.+++ .-+.||+-||
T Consensus 159 ~~~~~vIAYEPvWAIG-TG~~-Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~-~N~~~l~~~~diDG~LVG 235 (251)
T 2vxn_A 159 AWNQVVLAYEPVWAIG-TGKV-ATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNA-ANAATLYAKPDINGFLVG 235 (251)
T ss_dssp GGGGEEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCT-TTHHHHHTSTTCCEEEES
T ss_pred HhCCEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCH-hHHHHHhcCCCCCeeeec
Confidence 12333332 333 6643 4455666766667742 1 379999999984 6666655 5679999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
++-.+
T Consensus 236 gAsL~ 240 (251)
T 2vxn_A 236 GASLK 240 (251)
T ss_dssp GGGGS
T ss_pred HHHHH
Confidence 99887
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.041 Score=52.47 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=93.0
Q ss_pred ccEEEEEeCC-CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--C
Q 021527 63 VALIPYITAG-DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--S 139 (311)
Q Consensus 63 ~~li~yi~~G-~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~ 139 (311)
..+-.|.+.| ..+.+.+.+.++.+.+.|.+.+++-+ | +-+.+. .+.++.+|+.+ +
T Consensus 151 ~~vp~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~--------g-------------~~~~~~-~e~v~avr~a~g~d 208 (388)
T 2nql_A 151 DSFPAYVSGLPERTLKARGELAKYWQDRGFNAFKFAT--------P-------------VADDGP-AAEIANLRQVLGPQ 208 (388)
T ss_dssp SEEEEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEG--------G-------------GCTTCH-HHHHHHHHHHHCTT
T ss_pred CceEeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeC--------C-------------CCChHH-HHHHHHHHHHhCCC
Confidence 3455576766 46778899999999999999999841 1 012334 56777777753 6
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+|+.+-. |. -+..+++.++.+.+.++|+..+- .|
T Consensus 209 ~~l~vDa--n~------------------------~~~~~~a~~~~~~l~~~~i~~iE--qP------------------ 242 (388)
T 2nql_A 209 AKIAADM--HW------------------------NQTPERALELIAEMQPFDPWFAE--AP------------------ 242 (388)
T ss_dssp SEEEEEC--CS------------------------CSCHHHHHHHHHHHGGGCCSCEE--CC------------------
T ss_pred CEEEEEC--CC------------------------CCCHHHHHHHHHHHhhcCCCEEE--CC------------------
Confidence 7777642 21 11236666777777777776441 11
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
+++...+.++++|+.+++||+.+-.+.++++++++++.| +|.|.+-
T Consensus 243 --------------~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik 289 (388)
T 2nql_A 243 --------------VWTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMRARIERCRIAIVQPE 289 (388)
T ss_dssp --------------SCTTCHHHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTSCCSEECCC
T ss_pred --------------CChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEec
Confidence 111224568889998999999999999999999999766 7998773
|
| >3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.054 Score=49.82 Aligned_cols=122 Identities=14% Similarity=0.242 Sum_probs=73.3
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHHH---------HHHHHhCC-----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDRM---------KAIVEASE----- 216 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~eri---------~~i~~~a~----- 216 (311)
-...+++.|++.+|+..- .+.|..++ ...+.++|+.+|+-+.- |-++|- ..+...-.
T Consensus 104 S~~mLkd~G~~~VIiGHSERR~~f~Etde~V~~Kv~~Al~~GL~pIlCVGE-tleeRe~g~t~~vv~~Ql~~~l~~~~~~ 182 (275)
T 3kxq_A 104 SAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAGLVALICVGE-TLEERKSNKVLDVLTRQLEGSLPDGATA 182 (275)
T ss_dssp CHHHHHHHTCSEEEESCHHHHHHTCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHSCTTCCT
T ss_pred CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHCCCHHHHHHHHHHHHHcCCccc
Confidence 456789999999999731 01232333 36678899998887764 444541 11211111
Q ss_pred --ceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC---------CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHh
Q 021527 217 --GFVYLVS--SIGVTGARASISGHVQTLLREIKESS---------TKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAM 282 (311)
Q Consensus 217 --gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~---------~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSai 282 (311)
-.|-|.+ ..| ||.. ..+....+..+.||+.. +++|+.|+.++ |+|+++++.. ..||+.||.|=
T Consensus 183 ~~vVIAYEPVWAIG-TGkt-At~e~aqevh~~IR~~l~~~~~~~a~~~rIlYGGSV~-~~Na~el~~~~dIDG~LVGgAS 259 (275)
T 3kxq_A 183 ENIIIAYEPVWAVG-TGNT-ATSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSVK-PSNAFELLSTAHVNGALIGGAS 259 (275)
T ss_dssp TTEEEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECSCCC-TTTHHHHHTSTTCCEEEESGGG
T ss_pred CCEEEEECChhhhc-CCCC-CCHHHHHHHHHHHHHHHHHhhhhhcccceEEEcCCcC-HhHHHHHHcCCccceEEeehhh
Confidence 1333322 222 5543 33555666666666542 58999999997 7999999844 48999999887
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 260 L~ 261 (275)
T 3kxq_A 260 LK 261 (275)
T ss_dssp SS
T ss_pred cC
Confidence 66
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.036 Score=61.28 Aligned_cols=107 Identities=14% Similarity=0.186 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHHc--CCCeEEEeCCCC-hHHHHHHHHHhCCceEEEEecCCccCCCC-------CCCchHHHHHHHHhh
Q 021527 178 LEETESLQKEAMKN--KIELVLFTTPTT-PTDRMKAIVEASEGFVYLVSSIGVTGARA-------SISGHVQTLLREIKE 247 (311)
Q Consensus 178 ~ee~~~~~~~~~~~--gi~~I~lisp~t-~~eri~~i~~~a~gfiY~vs~~G~TG~~~-------~~~~~~~~~l~~vk~ 247 (311)
+|+..++...+++. +..++.-+.++. ..+..+..++..-.+|.+....|.||... +.+ ....|.++.+
T Consensus 977 ~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~P--t~~aL~ev~~ 1054 (1479)
T 1ea0_A 977 IEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLP--WEMGLSEVHQ 1054 (1479)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchh--HHHHHHHHHH
Confidence 35566677777776 444333333332 22333334443334443322335555321 122 2234555444
Q ss_pred c-------CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 248 S-------STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 248 ~-------~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
. .++||++.+||.+..|+.+.+.+|||+|-+||++...+
T Consensus 1055 al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a~ 1100 (1479)
T 1ea0_A 1055 VLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAM 1100 (1479)
T ss_dssp HHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHH
T ss_pred HHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHHH
Confidence 3 26999999999999999999999999999999998765
|
| >3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.14 Score=50.29 Aligned_cols=194 Identities=15% Similarity=0.166 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...++++.+.+. +.++.+|.+|=. +.||-+-+.- -+.++.++ .+.||++..-..+|-.+ .
T Consensus 33 ~~a~~~v~~~~~~-v~~~Kvg~~lf~--~~G~~~v~~L-------------~~~~~~~~--~g~~VflDlK~~DIpnT-~ 93 (453)
T 3qw4_B 33 EECKRLIEQTHEY-AAAYKPNAAFFE--FFGAEGWAAL-------------SEVIRAVP--AGIPVVLDAKRGDIADT-A 93 (453)
T ss_dssp HHHHHHHHHHGGG-CSEEEEBHHHHH--TTHHHHHHHH-------------HHHHHTSC--TTSCBEEEEEECCCHHH-H
T ss_pred HHHHHHHHHhCCc-CcEEEEcHHHHH--hcCHHHHHHH-------------HHHHHhhc--CCCeEEEEeecCChHHH-H
Confidence 6677777877654 899999988821 2354432211 11222223 26789998766655433 3
Q ss_pred HHHHHHHHH-cCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCCh---------------HHHHHHHHH-hC--Cc
Q 021527 157 DNFMSTVRD-IGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTP---------------TDRMKAIVE-AS--EG 217 (311)
Q Consensus 157 ~~fi~~~~~-aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~---------------~eri~~i~~-~a--~g 217 (311)
..+++.+.+ .|+|.+.++-..-.+ .+....+..|-.+..+++-+.+ .+.+.+.++ .. .|
T Consensus 94 ~~~a~~~~~~lg~d~vTvh~~~G~~--~l~~~~~~~~~~v~vL~~tS~~~~~~lq~~~~~~~~~~~~V~~~a~~~~~~~g 171 (453)
T 3qw4_B 94 DAYATSAFKHLNAHAITASPYMGSD--SLQPFMRYPDKAVFVLCKTSNKGSNDLQCLRVGDRYLYEAVAERAEGPWNVNG 171 (453)
T ss_dssp HHHHHHHHTTSCCSEEEECSTTCHH--HHHHHHTCTTSEEEEEEECSSGGGGGTTTSEETTEEHHHHHHHHHTTTTCTTS
T ss_pred HHHHHHHHHHcCCCEEEEcccCCHH--HHHHHHHhhCCcEEEEEeCCCcchHHHHhcccCCCCHHHHHHHHHHHHHhhcC
Confidence 456776554 899999996332122 2223222233222333221111 133333333 21 23
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE-eeCCCCHHHHHHHHHcCCcE------EEEhhHhhchhhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV-GFGISKPEHVQQVAGWGADG------VIVGSAMVKLLGEA 289 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v-GfGIst~e~v~~v~~~GADG------vIVGSaiv~~~~~~ 289 (311)
.+=+|. |.| .+ +.++.+|+.+ +.++++ |.|-.. .+..++...|+|. ++||-.|.+.
T Consensus 172 ~~GvV~--gat------~~---~e~~~ir~~~~~~~~l~PGig~qg-~tp~~a~~~g~d~~~~~~livvgR~I~~A---- 235 (453)
T 3qw4_B 172 NVGLVV--GAT------DP---VALARVRARAPTLWFLVPGIGAQG-GSLKASLDAGLRADGSGMLINVSRGLARA---- 235 (453)
T ss_dssp CEEEEE--CTT------CH---HHHHHHHHHCSSCCEEECCSSTTC-CCHHHHHHHHCCTTSCCEEEEESHHHHSC----
T ss_pred CeEEEE--CCC------CH---HHHHHHHHhCCCCeEEECCcCCCC-CCHHHHHHhcCCcccCCceEecChhhccC----
Confidence 332221 111 11 3477788765 456655 555431 2344555577887 9999999884
Q ss_pred CCchhHHHHHHHHHHHHH
Q 021527 290 QSPEEGLKELEKFAKSLK 307 (311)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~ 307 (311)
.+|.+..+++.+-+++.+
T Consensus 236 ~dp~~aa~~i~~~i~~~r 253 (453)
T 3qw4_B 236 ADPRAAAKELCEEINAIR 253 (453)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 345555555555554443
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.033 Score=51.32 Aligned_cols=116 Identities=12% Similarity=-0.032 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC-----CCCCCChHHHHHHHHHHHHcCCC
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY-----SDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf-----sDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
.+.+.++.+++.-...++.-+.++. +.+...++++.++++|+|.|.+-.-. -|+....|....+ ....|.+
T Consensus 145 ~~~~iv~~vr~~~~~Pv~vKi~~~~-~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~---~~~gG~s 220 (311)
T 1jub_A 145 ATEKLLKEVFTFFTKPLGVKLPPYF-DLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPK---DGFGGIG 220 (311)
T ss_dssp HHHHHHHHHTTTCCSCEEEEECCCC-SHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGG---GGEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC-CHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccC---CCCCccc
Confidence 4566777776554455666665553 66788889999999999999884321 1111111100000 0000111
Q ss_pred ----HHHHHHHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 124 ----FNAILSMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 124 ----~~~~~~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
....++.++++++.+ ++||+..+-.. . -+.+.++..+|+|+|.+.
T Consensus 221 g~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~-----~-~~da~~~l~~GAd~V~vg 271 (311)
T 1jub_A 221 GAYIKPTALANVRAFYTRLKPEIQIIGTGGIE-----T-GQDAFEHLLCGATMLQIG 271 (311)
T ss_dssp SGGGHHHHHHHHHHHHTTSCTTSEEEEESSCC-----S-HHHHHHHHHHTCSEEEEC
T ss_pred cccccHHHHHHHHHHHHhcCCCCCEEEECCCC-----C-HHHHHHHHHcCCCEEEEc
Confidence 112256888999888 89999876321 1 233444456899999884
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.032 Score=51.05 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCC---------CCCCC-------CChHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVP---------YSDPL-------ADGPVIQA 112 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~P---------fsDP~-------aDGp~Iq~ 112 (311)
.+.+.++++++.-...++.-+.++ ..+..++++.++++|+|.|.+... -..|. ..|+.+.
T Consensus 151 ~~~eii~~v~~~~~~pv~vk~~~~---~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~- 226 (311)
T 1ep3_A 151 VAAALVKACKAVSKVPLYVKLSPN---VTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIK- 226 (311)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSC---SSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGH-
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC---hHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccch-
Confidence 456777777665334566666543 445578889999999999999321 11121 1222111
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 113 AATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 113 a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
...++.++++++.+++||+..+-.. . .+.+..+.++|+|+|.+.
T Consensus 227 ------------~~~~~~i~~i~~~~~ipvia~GGI~-----~-~~d~~~~l~~GAd~V~vg 270 (311)
T 1ep3_A 227 ------------PVALKLIHQVAQDVDIPIIGMGGVA-----N-AQDVLEMYMAGASAVAVG 270 (311)
T ss_dssp ------------HHHHHHHHHHHTTCSSCEEECSSCC-----S-HHHHHHHHHHTCSEEEEC
T ss_pred ------------HHHHHHHHHHHHhcCCCEEEECCcC-----C-HHHHHHHHHcCCCEEEEC
Confidence 1125688888888899999865321 1 234555667899999884
|
| >3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.077 Score=48.27 Aligned_cols=122 Identities=20% Similarity=0.326 Sum_probs=75.0
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHHH------------HHHHHhCC--
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDRM------------KAIVEASE-- 216 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~eri------------~~i~~~a~-- 216 (311)
-...+++.|++.+|+..- .+.|..++ ...+.++|+.+|+-+.- +-++|- +.....-.
T Consensus 82 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~V~~Kv~~Al~~GL~pIlCvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 160 (254)
T 3m9y_A 82 SPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGE-TDEERESGKANDVVGEQVKKAVAGLSED 160 (254)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHCCCHHHHHHHHHHHHHhcCCHH
Confidence 456789999999999731 01232222 45578899998887764 434331 11111111
Q ss_pred ----ceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEh
Q 021527 217 ----GFVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQVA-GWGADGVIVG 279 (311)
Q Consensus 217 ----gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVG 279 (311)
-.|-|.+ ..| ||.. ..+....+..+.||+. -+++|++|++| +++|+.+++ .-+.||+-||
T Consensus 161 ~~~~vvIAYEPvWAIG-TG~~-At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV-~~~N~~~l~~~~diDG~LVG 237 (254)
T 3m9y_A 161 QLKSVVIAYEPIWAIG-TGKS-STSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSV-KPNNIKEYMAQTDIDGALVG 237 (254)
T ss_dssp HHHHCEEEECCGGGCC---CC-CCHHHHHHHHHHHHHHHHHHSCHHHHTTSEEEECSCC-CTTTHHHHHTSTTCCEEEES
T ss_pred HhCCEEEEECChhhhc-CCCC-CCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCc-CHHHHHHHHcCCCCCeEEee
Confidence 1344432 333 6643 2344555555555552 25899999999 589999998 6679999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
+|-.+
T Consensus 238 gASL~ 242 (254)
T 3m9y_A 238 GASLK 242 (254)
T ss_dssp GGGSS
T ss_pred HHhhC
Confidence 99887
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.13 Score=44.46 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+.++.+.+.|++.+.+.+...+....+++.++++++.++.........++++...+..-.++ . .| . .+.
T Consensus 22 ~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V--~--~~---~---~~~ 91 (212)
T 2v82_A 22 LAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLI--V--TP---N---IHS 91 (212)
T ss_dssp HHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEE--E--CS---S---CCH
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEE--E--eC---C---CCH
Confidence 345667788899999987665555556666777778766553333334566666555433333 2 12 1 122
Q ss_pred hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 237 HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 237 ~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
+.++..++ .+.++++| ++|++++.+..+.|+|.+.+
T Consensus 92 ---~~~~~~~~-~g~~~~~g--~~t~~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 92 ---EVIRRAVG-YGMTVCPG--CATATEAFTALEAGAQALKI 127 (212)
T ss_dssp ---HHHHHHHH-TTCEEECE--ECSHHHHHHHHHTTCSEEEE
T ss_pred ---HHHHHHHH-cCCCEEee--cCCHHHHHHHHHCCCCEEEE
Confidence 34544443 46677766 89999999999999999986
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.071 Score=50.42 Aligned_cols=136 Identities=10% Similarity=0.034 Sum_probs=92.2
Q ss_pred cEEEEEeCCC--CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--C
Q 021527 64 ALIPYITAGD--PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--S 139 (311)
Q Consensus 64 ~li~yi~~G~--P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~ 139 (311)
.+-.|.+.|+ ++.+.+.+.++.+.+.|.+.+.+-+- ++ +++...+.++.+|+.+ +
T Consensus 133 ~v~~y~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g------~~---------------~~~~~~e~v~avr~a~G~d 191 (371)
T 2ovl_A 133 VVPVYAGGIDLELPVADLKTQADRFLAGGFRAIKMKVG------RP---------------DLKEDVDRVSALREHLGDS 191 (371)
T ss_dssp EEEEEEECCBTTSCHHHHHHHHHHHHHTTCSCEEEECC------CS---------------SHHHHHHHHHHHHHHHCTT
T ss_pred CeeEEEeCCCcCCCHHHHHHHHHHHHHcCCCEEEECCC------CC---------------CHHHHHHHHHHHHHHhCCC
Confidence 4445766664 46788999999999999999998421 11 2334456777887754 6
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+|+.+-. |. -+..+++.++.+.+.++|+..+- .|
T Consensus 192 ~~l~vDa--n~------------------------~~~~~~a~~~~~~l~~~~i~~iE--qP------------------ 225 (371)
T 2ovl_A 192 FPLMVDA--NM------------------------KWTVDGAIRAARALAPFDLHWIE--EP------------------ 225 (371)
T ss_dssp SCEEEEC--TT------------------------CSCHHHHHHHHHHHGGGCCSEEE--CC------------------
T ss_pred CeEEEEC--CC------------------------CCCHHHHHHHHHHHHhcCCCEEE--CC------------------
Confidence 7776642 21 11235666677777777776441 11
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhh
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGS 280 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGS 280 (311)
++++..+.++++++.+++||+.+-.+.++++++++++.| +|++.+.-
T Consensus 226 --------------~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~ 273 (371)
T 2ovl_A 226 --------------TIPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDV 273 (371)
T ss_dssp --------------SCTTCHHHHHHHHHHHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCT
T ss_pred --------------CCcccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCc
Confidence 111223567888888899999999999999999998765 79887743
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.008 Score=58.36 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=88.5
Q ss_pred HHHHHHHHHHCCCCEEEE--cC---------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-CcEEE
Q 021527 79 TAEALKLLDSCGSDIIEL--GV---------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CPIAL 144 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IEl--G~---------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iPiil 144 (311)
+.+.++...++|.|+||| +. |.++---| |--+.+- .+-.+++++.+|+.+. -||.+
T Consensus 170 ~~~aa~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr----------~r~~~ei~~av~~~~~~~~v~~ 239 (407)
T 3tjl_A 170 YTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENR----------ARLILELIDHLSTIVGADKIGI 239 (407)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHH----------HHHHHHHHHHHHHHHCGGGEEE
T ss_pred HHHHHHHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhC----------hHHHHHHHHHHHHHhCCCeEEE
Confidence 677788889999999999 33 55444444 1112221 1234677777776643 36655
Q ss_pred Eec-CcchhccCHHHHHHHHHHcCCcEEEec-C--CChhhHHHHHHHH---HHcC--CCeEEEeCCCChHHHHHHHHHhC
Q 021527 145 FTY-YNPILKRGVDNFMSTVRDIGIRGLVVP-D--VPLEETESLQKEA---MKNK--IELVLFTTPTTPTDRMKAIVEAS 215 (311)
Q Consensus 145 m~Y-~n~i~~~g~~~fi~~~~~aGadGviip-D--lp~ee~~~~~~~~---~~~g--i~~I~lisp~t~~eri~~i~~~a 215 (311)
-.- ++.+ +|+-.. | .|.++...+.+.+ .+.| ++.|-+..+.+..
T Consensus 240 r~~~~~~~-----------------~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~---------- 292 (407)
T 3tjl_A 240 RISPWATF-----------------QNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSG---------- 292 (407)
T ss_dssp EECTTCCG-----------------GGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEET----------
T ss_pred EECccccc-----------------CCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCC----------
Confidence 321 1111 111111 2 1344556666777 6667 8877776553210
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc----CCcEEEEhhHhhc
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW----GADGVIVGSAMVK 284 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~----GADGvIVGSaiv~ 284 (311)
.+ +. + .+. .. +.++.+|+..+.||++.+||++++++.++++. +||.|-+|.+++.
T Consensus 293 -~~-~~----~-~~~----~~---~~~~~ir~~~~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~ia 351 (407)
T 3tjl_A 293 -NV-DV----S-EED----QA---GDNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTS 351 (407)
T ss_dssp -TE-EC----C-GGG----CC---CCSHHHHHHCCSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHH
T ss_pred -CC-cC----C-ccc----hh---HHHHHHHHHhCCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhh
Confidence 00 00 0 000 00 12455666667899999999987766555544 5999999998875
|
| >3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.48 Score=44.92 Aligned_cols=214 Identities=19% Similarity=0.202 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCH--
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNF-- 124 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~-- 124 (311)
...+.+.|+..++.| -++-.|= -.+++...-++++.++.+..+|-=- ..|- + ....|..+
T Consensus 6 ~~~~~~ll~~A~~~~-yAV~AfN---v~n~e~~~Avl~AAee~~sPvIlq~-------s~g~-~------~y~~g~~~~~ 67 (349)
T 3elf_A 6 PEVYAEMLGQAKQNS-YAFPAIN---CTSSETVNAAIKGFADAGSDGIIQF-------STGG-A------EFGSGLGVKD 67 (349)
T ss_dssp HHHHHHHHHHHHHTT-CCEEEEE---CCSHHHHHHHHHHHHHTTCCEEEEE-------CHHH-H------HHHHCTTTCC
T ss_pred HHHHHHHHHHHHHcC-ceEEEEe---eCCHHHHHHHHHHHHHhCCCEEEEc-------ChhH-H------hhcCcchhhh
Confidence 456788888877664 3454454 3467888899999999999876432 1120 0 11112211
Q ss_pred -----HHHHHHHHHhhccCCCcEEEEec-C-c----chhccC----HHHHHHHHHHcCCcEEEe--cCCChhh----HHH
Q 021527 125 -----NAILSMLKEVVPQMSCPIALFTY-Y-N----PILKRG----VDNFMSTVRDIGIRGLVV--PDVPLEE----TES 183 (311)
Q Consensus 125 -----~~~~~~i~~ir~~~~iPiilm~Y-~-n----~i~~~g----~~~fi~~~~~aGadGvii--pDlp~ee----~~~ 183 (311)
..+..+++.+.++.++||.|-.- . + +... + ..+.++.+.+.|.+.+.+ ..+|+|| ..+
T Consensus 68 ~v~g~~~~a~~v~~~A~~~~VPVaLHlDHg~~~~ld~~~~-~~l~~~~~~i~~~i~~GFtSVMiDgS~lp~eENi~~Tk~ 146 (349)
T 3elf_A 68 MVTGAVALAEFTHVIAAKYPVNVALHTDHCPKDKLDSYVR-PLLAISAQRVSKGGNPLFQSHMWDGSAVPIDENLAIAQE 146 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEECCCCGGGGGGTHH-HHHHHHHHHHHTTCCCSCSEEEECCTTSCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcccchhhh-hhHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHH
Confidence 23345777777888999998741 1 1 1110 1 123444555568999888 4688887 677
Q ss_pred HHHHHHHcCCCeEE----E------e-------CCCChHHHHHHHHHh-C---CceEEE-E---ecCCccC-CCCCCCch
Q 021527 184 LQKEAMKNKIELVL----F------T-------TPTTPTDRMKAIVEA-S---EGFVYL-V---SSIGVTG-ARASISGH 237 (311)
Q Consensus 184 ~~~~~~~~gi~~I~----l------i-------sp~t~~eri~~i~~~-a---~gfiY~-v---s~~G~TG-~~~~~~~~ 237 (311)
+.+.+.+.|+.+=- + + .-|+| +...+..+. . .|...+ + +.-|++- ....++.+
T Consensus 147 vv~~ah~~gvsVEaElG~iGG~Edgv~~~~~~~~yT~P-eea~~Fv~~tg~~~~gvD~LAvaiGt~HG~Yk~g~p~L~~~ 225 (349)
T 3elf_A 147 LLKAAAAAKIILEIEIGVVGGEEDGVANEINEKLYTSP-EDFEKTIEALGAGEHGKYLLAATFGNVHGVYKPGNVKLRPD 225 (349)
T ss_dssp HHHHHHHTTCEEEEEESCCBC-------------CCCH-HHHHHHHHHHTTSTTSCEEEEECSSCBSSCCCTTSSCCCTH
T ss_pred HHHHHHHcCCeEEEEeeccccccCCcccccccccCCCH-HHHHHHHHHhCCCCCCceEEEEecCCcccCCCCCCCccCHH
Confidence 88889888864211 0 0 01344 444454443 2 234444 2 3334331 12234443
Q ss_pred HHHHHHHHhhcC-----------CCcEEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 238 VQTLLREIKESS-----------TKPVAV--GFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 238 ~~~~l~~vk~~~-----------~~Pv~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.|+++++.+ ++|++. |.|+. .|++++..+.|.-=+=|+|.+-.
T Consensus 226 ---~L~~I~~~v~~~~~~~~~~~~vpLVlHGgSG~p-~e~i~~ai~~GV~KiNi~Tdl~~ 281 (349)
T 3elf_A 226 ---ILAQGQQVAAAKLGLPADAKPFDFVFHGGSGSL-KSEIEEALRYGVVKMNVDTDTQY 281 (349)
T ss_dssp ---HHHHHHHHHHHHHTCCTTCCCCCEEECCCTTCC-HHHHHHHHHTTEEEEEECHHHHH
T ss_pred ---HHHHHHHHHHhhcCCccccCCCcEEEeCCCCCC-HHHHHHHHHcCCEEEEcchHHHH
Confidence 455554432 588766 66775 79999999999888888887754
|
| >1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... | Back alignment and structure |
|---|
Probab=96.22 E-value=0.016 Score=52.64 Aligned_cols=122 Identities=18% Similarity=0.255 Sum_probs=75.7
Q ss_pred HHHHHHHcCCcEEEecCC----Chhh----HHHHHHHHHHcCCCeEEEeCCCChHHHH------------HHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEE----TESLQKEAMKNKIELVLFTTPTTPTDRM------------KAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee----~~~~~~~~~~~gi~~I~lisp~t~~eri------------~~i~~~---- 214 (311)
-...+++.|++.+|+..- .+.| ..+-...+.++|+.+|+-+.- +-++|- +...+.
T Consensus 79 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 157 (248)
T 1r2r_A 79 SPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGE-KLDEREAGITEKVVFEQTKVIADNVKDW 157 (248)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHHHTCSCG
T ss_pred CHHHHHHcCCCEEEECChhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHhCCChHHHHHHHHHHHHhhhhhh
Confidence 456789999999999631 1122 222455678899988877664 434442 111110
Q ss_pred CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----C------CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhH
Q 021527 215 SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES----S------TKPVAVGFGISKPEHVQQVA-GWGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----~------~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSa 281 (311)
..-.|-|.+ ..| ||.. ..++...+..+.+|+. . +++|+.|++|+. +++.+++ .-+.||+-||++
T Consensus 158 ~~~vIAYEPvWAIG-TG~~-Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~-~N~~~l~~~~diDG~LVGgA 234 (248)
T 1r2r_A 158 SKVVLAYEPVWAIG-TGKT-ATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTG-ATCKELASQPDVDGFLVGGA 234 (248)
T ss_dssp GGEEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCT-TTHHHHHTSTTCCEEEESGG
T ss_pred hceEEEEecHHhhC-CCCC-CCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCH-hHHHHHHcCCCCCeeEechH
Confidence 122343432 333 6643 4455666766667742 1 379999999984 6666655 567999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 235 sL~ 237 (248)
T 1r2r_A 235 SLK 237 (248)
T ss_dssp GGS
T ss_pred HhC
Confidence 887
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.062 Score=49.46 Aligned_cols=175 Identities=16% Similarity=0.197 Sum_probs=101.5
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
| -|.+.+.+.++.+.++|+|.|-+.--- -+++ -.+.++-.++++.+.+. -++||+.-+-.|
T Consensus 18 g-iD~~~l~~lv~~li~~Gv~gl~~~Gtt----GE~~------------~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~ 80 (291)
T 3a5f_A 18 G-VDFDKLSELIEWHIKSKTDAIIVCGTT----GEAT------------TMTETERKETIKFVIDKVNKRIPVIAGTGSN 80 (291)
T ss_dssp S-BCHHHHHHHHHHHHHTTCCEEEESSGG----GTGG------------GSCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred C-cCHHHHHHHHHHHHHcCCCEEEECccc----cChh------------hCCHHHHHHHHHHHHHHhCCCCcEEEeCCcc
Confidence 5 788999999999999999999884111 0111 13455555666665543 368988876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHHH-HHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETESL-QKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~~-~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.++|+|++++. - ...++..++ ...+...++..+++=.| +.+.+-+.++++ -..+
T Consensus 81 ~t~--~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~-~pni 157 (291)
T 3a5f_A 81 NTA--ASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCE-DKNI 157 (291)
T ss_dssp SHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHTT-STTE
T ss_pred cHH--HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc-CCCE
Confidence 322 12356777899999999883 1 122444443 44455567776665333 234465656654 2444
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+| ++ ..+.++++.+ +.-|+.|.. +.+-..+..|+||+|-|++
T Consensus 158 vgiK~---s~g-------d~-~~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~a 207 (291)
T 3a5f_A 158 VAVXE---ASG-------NI-SQIAQIKALCGDKLDIYSGND----DQIIPILALGGIGVISVLA 207 (291)
T ss_dssp EEEEE---CSC-------CH-HHHHHHHHHHGGGSEEEESCG----GGHHHHHHTTCCEEEESGG
T ss_pred EEEeC---CCC-------CH-HHHHHHHHhcCCCeEEEeCcH----HHHHHHHHCCCCEEEecHH
Confidence 43311 111 11 2333443322 345655543 3455566799999999976
|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.45 Score=46.37 Aligned_cols=208 Identities=13% Similarity=0.091 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc---CCC-----CCCCCChHHHHHHHHHHHHc
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG---VPY-----SDPLADGPVIQAAATRSLAR 120 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG---~Pf-----sDP~aDGp~Iq~a~~~Al~~ 120 (311)
...+.|.++.++++. ++++|-=|. -.++.++++|.+.|=+. +-. +.++-|+-.
T Consensus 48 ~~a~~lr~Ll~~~~~----l~~~ga~D~----~sA~~~~~aGf~Aiy~SG~~vAa~~~~~~~G~PD~~~----------- 108 (433)
T 3eol_A 48 MGANRLWKLIHEEDF----VNALGALSG----NQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQSL----------- 108 (433)
T ss_dssp HHHHHHHHHHHHSSC----EEEEBCSSH----HHHHHHHHTTCCCEEEC-------------------------------
T ss_pred HHHHHHHHHhccCCC----EEeCCCCcH----HHHHHHHHhCCCEEEechHHHHhccchhcCCCCCCcc-----------
Confidence 456777777666543 234454332 34556677899998883 222 223334321
Q ss_pred CCCHHHHHHHHHHhhcc-------------------CCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC--
Q 021527 121 GTNFNAILSMLKEVVPQ-------------------MSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV-- 176 (311)
Q Consensus 121 G~~~~~~~~~i~~ir~~-------------------~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl-- 176 (311)
.+.+++++.+++|... ..+||++. ||-|+. .+.+.++.+.++|+.|+.+=|-
T Consensus 109 -~~~~ev~~~v~rI~~a~~~~d~~~~~~~~~~~~~d~~lPIiaD~DtGfG~~~---nv~rtVk~~~~AGaAGi~IEDQ~~ 184 (433)
T 3eol_A 109 -YPANAGPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGDPL---DAFEIMKAYIEAGAAGVHFEDQLA 184 (433)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHTTSCCSSSCSCCCEEEECC---CCHH---HHHHHHHHHHHHTCSEEEEESBCC
T ss_pred -CCHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCCCeEEECCCCCCCcH---HHHHHHHHHHHcCCeEEEEecCCC
Confidence 3445556666665432 26999998 566644 3567889999999999999773
Q ss_pred --------------ChhhHH-HHHHH---HHHcCCCeEEEe-CC----------------------------------CC
Q 021527 177 --------------PLEETE-SLQKE---AMKNKIELVLFT-TP----------------------------------TT 203 (311)
Q Consensus 177 --------------p~ee~~-~~~~~---~~~~gi~~I~li-sp----------------------------------~t 203 (311)
|.+|.. +++.. ....|.+.++.. +. ..
T Consensus 185 ~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~d~vIiARTDA~~a~l~~s~~d~rd~~fl~g~g~r~~eG~y~~~~g 264 (433)
T 3eol_A 185 SEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNG 264 (433)
T ss_dssp ---------CCEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCS
T ss_pred CCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEEEcCCccccccccCcccccccceeccCcccccccccccCC
Confidence 344532 33322 222366655542 10 11
Q ss_pred hH---HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeC---CC-----CHHH----HHHH
Q 021527 204 PT---DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFG---IS-----KPEH----VQQV 268 (311)
Q Consensus 204 ~~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfG---Is-----t~e~----v~~v 268 (311)
.+ +|.+.+++ .-..||+.+ +. ....++.++.+.++.....++++... .+ +.++ +.++
T Consensus 265 ld~AI~Ra~AY~~-GAD~If~e~-----~~--~~~eei~~f~~~v~~~~P~~~L~~~~sPsfnw~~~~~~~~~~~f~~eL 336 (433)
T 3eol_A 265 IEPCIARAIAYAP-YCDLIWMET-----SK--PDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQREL 336 (433)
T ss_dssp HHHHHHHHHHHGG-GCSEEEECC-----SS--CCHHHHHHHHHHHHHHSTTCCEEEECCSSSCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEEeC-----CC--CCHHHHHHHHHHhcccCCCcccccCCCCCCcccccCChhHHhHHHHHH
Confidence 22 44444444 334455533 11 12345666777777654455544322 22 1111 4678
Q ss_pred HHcCCcEEEEhhHhhchhh
Q 021527 269 AGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 269 ~~~GADGvIVGSaiv~~~~ 287 (311)
.++|..-+++|.+..+...
T Consensus 337 a~lGv~~v~~~~a~~raa~ 355 (433)
T 3eol_A 337 GAMGYKFQFITLAGFHQLN 355 (433)
T ss_dssp HHHTEEEEEETTHHHHHHH
T ss_pred HHcCCeEEEeCcHHHHHHH
Confidence 8899999999999888653
|
| >2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.075 Score=48.73 Aligned_cols=173 Identities=14% Similarity=0.155 Sum_probs=104.6
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
|.-|.+.+.+.++.+.++ +|.|-+.--- -+++ -.+.++-.++++.+.+ ++||+.-+-.|..
T Consensus 14 g~iD~~~l~~lv~~li~~-v~gl~v~Gtt----GE~~------------~Ls~~Er~~v~~~~~~--rvpviaGvg~~~t 74 (283)
T 2pcq_A 14 GRLDEEAFRELAQALEPL-VDGLLVYGSN----GEGV------------HLTPEERARGLRALRP--RKPFLVGLMEETL 74 (283)
T ss_dssp CCBCHHHHHHHHHHHGGG-SSCCEETCTT----TTGG------------GSCHHHHHHHHHTCCC--SSCCEEEECCSSH
T ss_pred CCcCHHHHHHHHHHHHhh-CCEEEECCcC----cCch------------hcCHHHHHHHHHHHHh--CCcEEEeCCCCCH
Confidence 566788999999999999 9998874111 0111 1456666778887776 8998887655432
Q ss_pred hccCHHHHHHHHHHcCCcEEEec--CC----ChhhHHHHHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCceEE
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVP--DV----PLEETESLQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviip--Dl----p~ee~~~~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gfiY 220 (311)
. ..-+..+.+.++|+||+++. -. ..++..++.+.+.+ ++..+++=.| +.+.+-+.++++ -..++.
T Consensus 75 ~--~ai~la~~A~~~Gadavlv~~P~y~~~~~~~~l~~~f~~va~-~lPiilYn~P~~tg~~l~~~~~~~La~-~pnivg 150 (283)
T 2pcq_A 75 P--QAEGALLEAKAAGAMALLATPPRYYHGSLGAGLLRYYEALAE-KMPLFLYHVPQNTKVDLPLEAVEALAP-HPNVLG 150 (283)
T ss_dssp H--HHHHHHHHHHHHTCSEEEECCCCTTGGGTTTHHHHHHHHHHH-HSCEEEEECHHHHCCCCCHHHHHHHTT-STTEEE
T ss_pred H--HHHHHHHHHHhcCCCEEEecCCcCCCCCCHHHHHHHHHHHhc-CCCEEEEeCccccCcCCCHHHHHHHhc-CCCEEE
Confidence 2 12356777889999999883 21 23556666666555 7876665333 234455656654 344443
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
+=. .+| ++ ..+.++++. .+..|+.|.. +.+-..+..|+||+|-|++-
T Consensus 151 iKd---ssg-------d~-~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~~n 198 (283)
T 2pcq_A 151 IKD---SSG-------DL-SRIAFYQARLQEFRVYTGHA----PTFLGALALGAEGGILAAAN 198 (283)
T ss_dssp EEE---CSC-------CH-HHHHHHHHHCSSCEEEECCG----GGHHHHHHTTCCEEECGGGG
T ss_pred EEE---CCC-------CH-HHHHHHHhcCCCEEEEECcH----HHHHHHHHcCCCEEEeCHHH
Confidence 311 111 11 234444441 1345655543 34556677999999988654
|
| >1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.015 Score=53.58 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=75.6
Q ss_pred HHHHHHHcCCcEEEecCC----Chhh----HHHHHHHHHHcCCCeEEEeCCCChHHHH------------HHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEE----TESLQKEAMKNKIELVLFTTPTTPTDRM------------KAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee----~~~~~~~~~~~gi~~I~lisp~t~~eri------------~~i~~~---- 214 (311)
-...+++.|++.+|+..- .+.| ..+-...+.++|+.+|+-+.- +-++|- +...+.
T Consensus 98 S~~mLkd~G~~~ViiGHSERR~~f~Etde~V~~Kv~~Al~~GL~pI~CvGE-tleeReag~t~~vv~~Ql~~~l~~~~~~ 176 (275)
T 1mo0_A 98 SPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGE-KLEEREAGHTKDVNFRQLQAIVDKGVSW 176 (275)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHHTTTCCS
T ss_pred CHHHHHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHhCCChHHHHHHHHHHHHhhhhhh
Confidence 456789999999999631 1122 222455678889998877654 434442 111110
Q ss_pred CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----C------CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhH
Q 021527 215 SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES----S------TKPVAVGFGISKPEHVQQVA-GWGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----~------~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSa 281 (311)
..-.|-|.+ ..| ||.. ..++...+..+.||+. . +++|+.|++|+. +|+.+++ .-+.||+-||++
T Consensus 177 ~~vvIAYEPvWAIG-TGkt-Atpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~-~N~~el~~~~diDG~LVGgA 253 (275)
T 1mo0_A 177 ENIVIAYEPVWAIG-TGKT-ASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTA-DNAAELGKKPDIDGFLVGGA 253 (275)
T ss_dssp TTEEEEECCGGGTT-TSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCT-TTHHHHTTSTTCCEEEESGG
T ss_pred cCEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhhChhhcCcccEEEcCCCCH-hhHHHHhcCCCCCeeEechH
Confidence 122343432 333 6743 4455666777767742 1 389999999984 6666655 567999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 254 SLk 256 (275)
T 1mo0_A 254 SLK 256 (275)
T ss_dssp GGS
T ss_pred HhC
Confidence 887
|
| >3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0067 Score=55.81 Aligned_cols=122 Identities=23% Similarity=0.352 Sum_probs=75.3
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHHH--------H-HHHHh-------
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDRM--------K-AIVEA------- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~eri--------~-~i~~~------- 214 (311)
-...+++.|++.+|+..- .+.|..++ ...+.++|+.+|+-+.- +-++|- . .+...
T Consensus 102 S~~mLkd~G~~~ViiGHSERR~~f~Etde~v~~Kv~~Al~~GL~pIlCVGE-tleere~g~t~~vv~~Ql~~~l~~v~~~ 180 (271)
T 3krs_A 102 SCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGLENGLKIVLCIGE-SLSERETGKTNDVIQKQLTEALKDVSDL 180 (271)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCeEEEEeCC-cHHHHHCCCHHHHHHHHHHHHHhchHhh
Confidence 456789999999999731 01122223 66778899998887764 334432 1 11111
Q ss_pred CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhH
Q 021527 215 SEGFVYLVS--SIGVTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVA-GWGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSa 281 (311)
..-.|-|.+ ..| ||.. ..++...+..+.||+.. +++|++|++|+ ++++.+++ .-+.||+-||+|
T Consensus 181 ~~~vIAYEPvWAIG-TG~t-Atpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~-~~N~~el~~~~diDG~LVGgA 257 (271)
T 3krs_A 181 SNLVIAYEPIWAIG-TGVV-ATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVT-PDNCNELIKCADIDGFLVGGA 257 (271)
T ss_dssp TTEEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHSCHHHHHHCCEEECSCCC-TTTHHHHHHSTTCCEEEESGG
T ss_pred cCEEEEECChhhhc-CCCC-CCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcC-HHHHHHHhcCCCCCEEEeeHH
Confidence 112333332 223 5542 33555666666666541 47999999998 57776665 567999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 258 SL~ 260 (271)
T 3krs_A 258 SLK 260 (271)
T ss_dssp GGS
T ss_pred hhh
Confidence 877
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.22 Score=46.45 Aligned_cols=205 Identities=17% Similarity=0.147 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
++..+.|+..++.+ -++-.|= -.+++...-++++.++.+..+|-=- ..|- +. .. |. .+
T Consensus 13 n~~~~ll~~A~~~~-yAV~AfN---v~n~e~~~Avl~AAee~~sPvIlq~-------s~g~-~~------y~-g~---~~ 70 (306)
T 3pm6_A 13 NRALPLLTFARTHS-FAIPAIC---VYNLEGILAIIRAAEHKRSPAMILL-------FPWA-IQ------YA-DS---LL 70 (306)
T ss_dssp CSSHHHHHHHHHTT-CCEEEEE---CSSHHHHHHHHHHHHHTTCCEEEEE-------CHHH-HH------HH-TT---HH
T ss_pred cHHHHHHHHHHHCC-cEEEEEe---eCCHHHHHHHHHHHHHhCCCEEEEc-------ChhH-Hh------hc-cH---HH
Confidence 46677888776654 3454454 3467889999999999999976432 1121 10 11 11 23
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHc--------CCcEEEe--cCCChhh----HHHHHHHHHHcCC
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDI--------GIRGLVV--PDVPLEE----TESLQKEAMKNKI 193 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~a--------GadGvii--pDlp~ee----~~~~~~~~~~~gi 193 (311)
...+..+.++.++||.|-. -+..-.+.+..+.++ |.+.+.+ ..+|+|| ..++.+.+++.|+
T Consensus 71 ~~~~~~~A~~~~VPVaLHl-----DHg~~~e~i~~ai~~~~~~~~~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gv 145 (306)
T 3pm6_A 71 VRTAASACRAASVPITLHL-----DHAQDPEIIKRAADLSRSETHEPGFDSIMVDMSHFSKEENLRLTRELVAYCNARGI 145 (306)
T ss_dssp HHHHHHHHHHCSSCEEEEE-----EEECCHHHHHHHHHTC------CCCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCCCCEEEEc-----CCCCCHHHHHHHHHhhhhccCCCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4566666667899998863 122224578889998 9999988 4688887 6678888888876
Q ss_pred CeEE----E------e-------CCCChHHHHHHHHHhCCceEEEE----ecCCccCC-CCCCCchHHHHHHHHhhcC--
Q 021527 194 ELVL----F------T-------TPTTPTDRMKAIVEASEGFVYLV----SSIGVTGA-RASISGHVQTLLREIKESS-- 249 (311)
Q Consensus 194 ~~I~----l------i-------sp~t~~eri~~i~~~a~gfiY~v----s~~G~TG~-~~~~~~~~~~~l~~vk~~~-- 249 (311)
.+=- + + .--|.++..++..+ .|...+- +..|.+.. ...++ .+.|+++++.+
T Consensus 146 sVEaElG~igG~Edgv~~~~~~~~~yT~Peea~~Fv~--TgvD~LAvaiGt~HG~Yk~~~p~Ld---~~~L~~I~~~v~~ 220 (306)
T 3pm6_A 146 ATEAEPGRIEGGEDGVQDTVDLEGVLTTPEESEEFVA--TGINWLAPAFGNVHGNYGPRGVQLD---YERLQRINEAVGE 220 (306)
T ss_dssp EEEECSSBCCCCBTTBCCCTTCCCBCCCHHHHHHHHT--TTCSEECCCSSCCSSCCCTTCCCCC---HHHHHHHHHHHTT
T ss_pred eEEEEeeeeccccCCccccccccccCCCHHHHHHHHH--cCCCEEEEEcCccccCcCCCCCccC---HHHHHHHHHHhCC
Confidence 3210 0 0 01244455556664 5554552 33343321 12233 35688888876
Q ss_pred CCcEEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 250 TKPVAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 250 ~~Pv~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
++|++. |.|+. .|++++..+.|.-=+=|+|.+-..
T Consensus 221 ~vpLVlHGgSG~p-~e~i~~ai~~GV~KiNi~Tdl~~a 257 (306)
T 3pm6_A 221 RVGLVLHGADPFT-KEIFEKCIERGVAKVNVNRAVNNE 257 (306)
T ss_dssp TSEEEECSCTTCC-HHHHHHHHHTTEEEEEESHHHHHH
T ss_pred CCCEEeeCCCCCC-HHHHHHHHHcCCeEEEeChHHHHH
Confidence 699866 66775 799999999998888899887543
|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.079 Score=47.22 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=41.6
Q ss_pred HHHHHHHHhhc---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHH
Q 021527 238 VQTLLREIKES---STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 306 (311)
Q Consensus 238 ~~~~l~~vk~~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l 306 (311)
-.++++++|+. .++||++-.+-.+.+...+..+.|||+.+. |.+. +++....+.+.++.+
T Consensus 184 G~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~-----KP~~----~~~L~~~i~~~l~~~ 246 (259)
T 3luf_A 184 GISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLN-----QPFE----PEELQCRVSHNLEAL 246 (259)
T ss_dssp HHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEE-----SSCC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEc-----CCCC----HHHHHHHHHHHHHhH
Confidence 35788888875 258998888888788888999999999865 4332 234444555555444
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.13 Score=47.11 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=100.0
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP 150 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~ 150 (311)
-|.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+..+- |+.-+-.|.
T Consensus 13 dg~iD~~~l~~lv~~li~~Gv~gl~v~Gtt----GE~~~------------Ls~~Er~~v~~~~~~~~~g-vi~Gvg~~~ 75 (286)
T 2r91_A 13 GGRLDPELFANHVKNITSKGVDVVFVAGTT----GLGPA------------LSLQEKMELTDAATSAARR-VIVQVASLN 75 (286)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEETSTT----TTGGG------------SCHHHHHHHHHHHHHHCSS-EEEECCCSS
T ss_pred CCccCHHHHHHHHHHHHHCCCCEEEECccc----cChhh------------CCHHHHHHHHHHHHHHhCC-EEEeeCCCC
Confidence 477888999999999999999999884111 11111 4555666677777665444 555443332
Q ss_pred hhccCHHHHHHHHHHcCCcEEEec--C----CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVP--D----VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviip--D----lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
.. ..-+..+.+.++|+||+++. - ...++..+ |...+...++..+++=.| +.+.+-+.+ -..+
T Consensus 76 t~--~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~----~pni 149 (286)
T 2r91_A 76 AD--EAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKE----LGCI 149 (286)
T ss_dssp HH--HHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSSCCCHHHHHH----HSCE
T ss_pred HH--HHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeChhhcCCCCCHHHHHh----cCCE
Confidence 21 12356777889999999883 2 22344444 455666778877665433 223344333 2344
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+=. .+| ++ ..+.++++. .+..|+.|.. +.+-..+..|+||+|-|++
T Consensus 150 vgiKd---s~g-------d~-~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~~a 198 (286)
T 2r91_A 150 RGVKD---TNE-------SL-AHTLAYKRYLPQARVYNGSD----SLVFASFAVRLDGVVASSA 198 (286)
T ss_dssp EEEEE---CCS-------CH-HHHHHHHHHCTTSEEEECCG----GGHHHHHHTTCSEECCGGG
T ss_pred EEEEe---CCC-------CH-HHHHHHHhcCCCEEEEEccH----HHHHHHHHcCCCEEEecHH
Confidence 33311 111 12 234444431 2455666653 3455667789999999876
|
| >1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.027 Score=51.54 Aligned_cols=122 Identities=20% Similarity=0.292 Sum_probs=75.5
Q ss_pred HHHHHHHcCCcEEEecCCC----hhh----HHHHHHHHHHcCCCeEEEeCCCChHHHH------------HHHHH-hC--
Q 021527 159 FMSTVRDIGIRGLVVPDVP----LEE----TESLQKEAMKNKIELVLFTTPTTPTDRM------------KAIVE-AS-- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp----~ee----~~~~~~~~~~~gi~~I~lisp~t~~eri------------~~i~~-~a-- 215 (311)
-...+++.|++.+|+..-- +.| ..+-...+.++|+.+|+-+.- +-++|- +...+ ..
T Consensus 86 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE-tleere~g~t~~vv~~Ql~~~l~~~~~~ 164 (261)
T 1m6j_A 86 HVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGE-TEAQRIANQTEEVVAAQLKAINNAISKE 164 (261)
T ss_dssp BHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHHHHSCTG
T ss_pred CHHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 4567899999999996310 112 222445677889998877664 434442 11111 11
Q ss_pred ---CceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----C------CCcEEEeeCCCCHHHHHHHH-HcCCcEEEEh
Q 021527 216 ---EGFVYLVS--SIGVTGARASISGHVQTLLREIKES----S------TKPVAVGFGISKPEHVQQVA-GWGADGVIVG 279 (311)
Q Consensus 216 ---~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----~------~~Pv~vGfGIst~e~v~~v~-~~GADGvIVG 279 (311)
.-.|-|.+ ..| ||.. ..++...+..+.+|+. . +++|+.|++|+ ++++.++. .-+.||+-||
T Consensus 165 ~~~~~vIAYEPvWAIG-TG~~-Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVG 241 (261)
T 1m6j_A 165 AWKNIILAYEPVWAIG-TGKT-ATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVN-PANCNELAKKADIDGFLVG 241 (261)
T ss_dssp GGGGEEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCC-TTTHHHHHTSTTCCEEEES
T ss_pred HcCCEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCCcC-HhhHHHHhcCCCCCeeEec
Confidence 22343432 333 6743 4455666766667742 1 47999999998 46666665 5669999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
++-.+
T Consensus 242 gAsL~ 246 (261)
T 1m6j_A 242 GASLD 246 (261)
T ss_dssp GGGGS
T ss_pred HHHhC
Confidence 99887
|
| >2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.021 Score=51.74 Aligned_cols=121 Identities=18% Similarity=0.302 Sum_probs=75.8
Q ss_pred HHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHH------------HHHHHHh-CC--
Q 021527 160 MSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDR------------MKAIVEA-SE-- 216 (311)
Q Consensus 160 i~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~-a~-- 216 (311)
...+++.|++.+|+..- .+.|..++ ...+.++|+.+|+-+.-+ -++| ++...+. ..
T Consensus 74 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEt-leereag~t~~vv~~Ql~~~l~~~~~~~ 152 (244)
T 2v5b_A 74 LASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGET-NEEREAGRTAAVVLTQLAAVAQKLSKEA 152 (244)
T ss_dssp HHHHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCC-HHHHHTTCHHHHHHHHHHHHHTTCCTGG
T ss_pred HHHHHHcCCCEEEeCchhhhhccCCCHHHHHHHHHHHHHCCCeEEEEcCCc-HHHHhcCCHHHHHHHHHHHHHhcCCHHH
Confidence 77899999999999731 01233333 566788999988877643 3332 1111111 11
Q ss_pred ---ceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhh
Q 021527 217 ---GFVYLVS--SIGVTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVAGW-GADGVIVGS 280 (311)
Q Consensus 217 ---gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGS 280 (311)
-.|-|.+ ..| ||.. ..++...+..+.+|+.. +++|+.|++|+ |+|+.+++.. ..||+.||.
T Consensus 153 ~~~~vIAYEPvWAIG-TG~~-Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~-~~N~~~l~~~~diDG~LVGg 229 (244)
T 2v5b_A 153 WSRVVIAYEPVWAIG-TGKV-ATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVT-AKNARTLYQMRDINGFLVGG 229 (244)
T ss_dssp GGGEEEEECCHHHHS-SSCC-CCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCC-HHHHHHHHTSTTCCEEEESG
T ss_pred cCCEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCCC-HhHHHHHhcCCCCCeeeech
Confidence 1233322 233 6643 44555666666666521 48999999997 8999998832 379999998
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
|=.+
T Consensus 230 ASL~ 233 (244)
T 2v5b_A 230 ASLK 233 (244)
T ss_dssp GGSS
T ss_pred HHHH
Confidence 8665
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.084 Score=51.83 Aligned_cols=185 Identities=13% Similarity=0.140 Sum_probs=106.1
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC-cEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC-PIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i-Piilm~Y~n~i~~~g~~~ 158 (311)
.+.++...++|+|++=+-+--..|= -++.+..-++++. ..+ .|.+|. |+ ..+.
T Consensus 265 ~eda~~a~~~Gad~iGfIf~~~SpR----------------~V~~~~a~~i~~~----~~v~~VgVFv--n~----~~~~ 318 (452)
T 1pii_A 265 GQDAKAAYDAGAIYGGLIFVATSPR----------------CVNVEQAQEVMAA----APLQYVGVFR--NH----DIAD 318 (452)
T ss_dssp HHHHHHHHHHTCSEEEEECCTTCTT----------------BCCHHHHHHHHHH----CCCEEEEEES--SC----CHHH
T ss_pred HHHHHHHHhcCCCEEEeecCCCCCC----------------CCCHHHHHHHHhc----CCCCEEEEEe--CC----CHHH
Confidence 5778888999999987764223331 1333322233333 222 355543 42 2355
Q ss_pred HHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCch
Q 021527 159 FMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGH 237 (311)
Q Consensus 159 fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~ 237 (311)
..+.+.+.+.|.|=++ |-+++.+..++..+. .++..+--+......++ ..+. ...++.+-+..|.||.. ++.+
T Consensus 319 i~~~~~~~~ld~vQLHG~E~~~~~~~l~~~~p-~~~~iika~~v~~~~~~-~~~~--~~d~~LlD~~~GGtG~~--fdW~ 392 (452)
T 1pii_A 319 VVDKAKVLSLAAVQLHGNEEQLYIDTLREALP-AHVAIWKALSVGETLPA-REFQ--HVDKYVLDNGQGGSGQR--FDWS 392 (452)
T ss_dssp HHHHHHHHTCSEEEECSCCCHHHHHHHHHHSC-TTSEEEEEEECSSSCCC-CCCT--TCCEEEEESCSCCSSCC--CCGG
T ss_pred HHHHHHhcCCCEEEECCCCCHHHHHHHHhhcc-CCCcEEEEEecCCccch-hhhh--cccEEEecCCCCCCCCc--cCHH
Confidence 5566788999999886 444443433322110 14555544433321111 0010 11233334566778864 4443
Q ss_pred HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 238 VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+ + +...+.|++..+|++ |+|+.+....|..||=|=|.+...-+ ....+++++|++.++.
T Consensus 393 ~---l---~~~~~~p~iLAGGL~-p~NV~~ai~~~p~gvDvsSGVE~~pG-----~KD~~ki~~f~~~~r~ 451 (452)
T 1pii_A 393 L---L---NGQSLGNVLLAGGLG-ADNCVEAAQTGCAGLDFNSAVESQPG-----IKDARLLASVFQTLRA 451 (452)
T ss_dssp G---G---TTSCCTTEEEESSCC-TTTHHHHHTTCCSEEEECGGGEEETT-----EECHHHHHHHHHHHHC
T ss_pred H---h---hcccCCcEEEEcCCC-HHHHHHHHhcCCCEEEeCCceeCCCC-----CCCHHHHHHHHHHHhh
Confidence 2 2 233468999999996 89998877799999999998875221 2346789999988763
|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.52 Score=46.00 Aligned_cols=207 Identities=15% Similarity=0.093 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc---CC-----CCCCCCChHHHHHHHHHHHHc
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG---VP-----YSDPLADGPVIQAAATRSLAR 120 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG---~P-----fsDP~aDGp~Iq~a~~~Al~~ 120 (311)
.-.+.|.++..+++.. +++|--|. -.++.++++|.+.|=+. +- .+.++-|+-
T Consensus 52 ~~a~~Lr~ll~~~~~l----~~~Ga~D~----~sA~~~~~aGf~Aiy~SG~~vAa~~~~s~~G~PD~~------------ 111 (439)
T 3i4e_A 52 RGAEKLWTLINNEPFV----NALGALTG----NQAMQQVKAGLKAIYLSGWQVAGDANVAGEMYPDQS------------ 111 (439)
T ss_dssp HHHHHHHHHHHHSSCE----EEEBCCSH----HHHHHHHHHTCSCEEECHHHHHHHTCTTCCCCCSSS------------
T ss_pred HHHHHHHHHHhcCCCE----EeCCCCCH----HHHHHHHHhCCCEEEechHHHhcccccccCCCCCcc------------
Confidence 3456666666564432 24444332 34455677799998883 11 122333321
Q ss_pred CCCHHHHHHHHHHhhcc--------------------CC--CcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecC
Q 021527 121 GTNFNAILSMLKEVVPQ--------------------MS--CPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPD 175 (311)
Q Consensus 121 G~~~~~~~~~i~~ir~~--------------------~~--iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipD 175 (311)
-.+.+++++.+++|... ++ +||++. ||-|+. .+.+.++.+.++|+.|+.+=|
T Consensus 112 ~~~~~ev~~~v~rI~~a~~~ad~i~~~~~~~~~~~~~~d~~~PviaD~dtGfG~~~---~v~~~vk~~~~aGaaGi~iED 188 (439)
T 3i4e_A 112 LYPANSVPLVVKRINNTLTRADQIQWSEGKNPGDEGYVDFFAPIVADAEAGFGGVL---NAFELMKAMIEAGASGVHFED 188 (439)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCTTSTTCCCCCCCEEEECTTTTSSHH---HHHHHHHHHHHHTCSEEEEES
T ss_pred cCCHHHHHHHHHHHHHHHHHhHhhhhhhccccccccccCCCCCeEEECCCCCCccH---HHHHHHHHHHHcCCEEEEEeC
Confidence 13455566666665321 34 999998 466643 356788899999999999977
Q ss_pred C----------------ChhhHH-HHHHH---HHHcCCCeEEEeC-C--------------------------------C
Q 021527 176 V----------------PLEETE-SLQKE---AMKNKIELVLFTT-P--------------------------------T 202 (311)
Q Consensus 176 l----------------p~ee~~-~~~~~---~~~~gi~~I~lis-p--------------------------------~ 202 (311)
- |.+|.. +++.. .+..|.+.++..= . .
T Consensus 189 q~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~IiARTDa~~a~l~~s~~d~~d~~fi~G~r~~eg~~~~~~ 268 (439)
T 3i4e_A 189 QLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVLVARTDAEAADLITSDIDDNDKPYLTGERTVEGFFRTKP 268 (439)
T ss_dssp BCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCTTTGGGEEEEECTTSCEEECC
T ss_pred CCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCcccccccccccccccchhhcccCcccccccccC
Confidence 3 344533 33322 2334777655431 1 1
Q ss_pred ChH---HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC---------CHHH----HH
Q 021527 203 TPT---DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS---------KPEH----VQ 266 (311)
Q Consensus 203 t~~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs---------t~e~----v~ 266 (311)
.-+ +|.+.+++ .-..||+.+ |. ....++.++.+.++.....+++++ |.+ +.++ ..
T Consensus 269 gldeAI~Ra~AY~~-GAD~if~E~-----~~--~~~eei~~f~~~v~~~~P~~~l~~-~~sPsfnw~~~~~~~~~~~f~~ 339 (439)
T 3i4e_A 269 GLEQAISRGLAYAP-YADLIWCET-----GK--PDLEYAKKFAEAIHKQFPGKLLSY-NCSPSFNWKKNLDDATIAKFQK 339 (439)
T ss_dssp SHHHHHHHHHHHTT-TCSEEEECC-----SS--CCHHHHHHHHHHHHHHSTTCEEEE-ECCSSSCHHHHSCHHHHHTHHH
T ss_pred CHHHHHHHHHHHHh-hCCEEEecC-----CC--CCHHHHHHHHHHhcccCCceEEee-CCCCCCcCcccCCHHHHHHHHH
Confidence 123 34444433 333455533 11 123446667777766555555553 332 2233 56
Q ss_pred HHHHcCCcEEEEhhHhhchhh
Q 021527 267 QVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 267 ~v~~~GADGvIVGSaiv~~~~ 287 (311)
++.++|..-++++.+..+...
T Consensus 340 eL~~lGv~~v~~~la~~raa~ 360 (439)
T 3i4e_A 340 ELGAMGYKFQFITLAGFHALN 360 (439)
T ss_dssp HHHHHTCCEEEETTHHHHHHH
T ss_pred HHHHcCCeEEEeChHHHHHHH
Confidence 788899999999999888654
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.19 Score=46.86 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=88.6
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPi 142 (311)
.+-.|.+.|..+.+.+.+.++.+.+.|.+.+++-+-. +.+.-++.++.+|+. .++++
T Consensus 128 ~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------------~~~~d~~~v~avr~~g~~~~l 185 (345)
T 2zad_A 128 EIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGE----------------------NLKEDIEAVEEIAKVTRGAKY 185 (345)
T ss_dssp EEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------------CHHHHHHHHHHHHHHSTTCEE
T ss_pred ceeeeEEecCCCHHHHHHHHHHHHHcCcCEEEEeecC----------------------CHHHHHHHHHHHHhhCCCCeE
Confidence 3445666666677888899999999999999984211 223335567777764 34566
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCC--eEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIE--LVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~--~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
.+- .|.- +..+++.++.+.+.++|+. .+- .
T Consensus 186 ~vD--an~~------------------------~~~~~a~~~~~~l~~~~i~~~~iE--~-------------------- 217 (345)
T 2zad_A 186 IVD--ANMG------------------------YTQKEAVEFARAVYQKGIDIAVYE--Q-------------------- 217 (345)
T ss_dssp EEE--CTTC------------------------SCHHHHHHHHHHHHHTTCCCSEEE--C--------------------
T ss_pred EEE--CCCC------------------------CCHHHHHHHHHHHHhcCCCeeeee--C--------------------
Confidence 543 2310 1346666677777777776 321 1
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEE
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIV 278 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIV 278 (311)
.++++..+.++++++.+++||+.|-.+.++++++++++.| +|.+.+
T Consensus 218 ------------P~~~~~~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~i 264 (345)
T 2zad_A 218 ------------PVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNI 264 (345)
T ss_dssp ------------CSCTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred ------------CCCcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence 1222223567888888889999999999999999988666 788888
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.23 Score=46.23 Aligned_cols=174 Identities=10% Similarity=0.073 Sum_probs=101.0
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.++|+|.|-+. |-+ ....-.+.++-.++++.+.+. -++||+.-+-.|
T Consensus 28 g~iD~~~l~~lv~~li~~Gv~gl~v~---------GtT-------GE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~s 91 (314)
T 3d0c_A 28 REIDWKGLDDNVEFLLQNGIEVIVPN---------GNT-------GEFYALTIEEAKQVATRVTELVNGRATVVAGIGYS 91 (314)
T ss_dssp CCBCHHHHHHHHHHHHHTTCSEECTT---------SGG-------GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEC---------ccc-------CChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCcC
Confidence 44667889999999999999999874 210 001114555556666666543 368988765323
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCCC--ChHHHHHHHHHhCCceEEE
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTPT--TPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp~--t~~eri~~i~~~a~gfiY~ 221 (311)
+- ..-+..+.+.++|+|++++. - ...++..+ |...++..++.++++= .+ .+.+-+.++++ -..++.+
T Consensus 92 t~---~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn-~tg~l~~~~~~~La~-~pnIvgi 166 (314)
T 3d0c_A 92 VD---TAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF-KDAHLSDDVIKELAP-LDKLVGI 166 (314)
T ss_dssp HH---HHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE-CCTTSCTHHHHHHTT-CTTEEEE
T ss_pred HH---HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe-CCCCcCHHHHHHHHc-CCCEEEE
Confidence 21 12357778899999999884 1 12244444 5566677787766543 11 23455555543 2344433
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC----CCcEEEeeCCCCHH-HHHHHHHcCCcEEEEhhH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS----TKPVAVGFGISKPE-HVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~----~~Pv~vGfGIst~e-~v~~v~~~GADGvIVGSa 281 (311)
=. .+| ++ ..+.++++.+ +..|+.|. -+ .+-..+..|++|+|-|++
T Consensus 167 Kd---ssg-------d~-~~~~~~~~~~~~~~~f~v~~G~----d~~~~~~~l~~G~~G~is~~a 216 (314)
T 3d0c_A 167 KY---AIN-------DI-QRVTQVMRAVPKSSNVAFICGT----AEKWAPFFYHAGAVGFTSGLV 216 (314)
T ss_dssp EE---CCC-------CH-HHHHHHHHHSCGGGCCEEEETT----HHHHHHHHHHHTCCEEEESGG
T ss_pred Ee---CCC-------CH-HHHHHHHHhcCCCCCEEEEEeC----cHHHHHHHHHcCCCEEEecHH
Confidence 11 111 12 3344554433 33454443 24 566677799999999975
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.06 Score=50.74 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=66.6
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCC-----CChhhHHHHHHHHHHCCCCEEEEcCCCCC--CCCChHHHHHHHHHHHHcCC
Q 021527 50 LAETFTRLKKQGKVALIPYITAGD-----PDLSTTAEALKLLDSCGSDIIELGVPYSD--PLADGPVIQAAATRSLARGT 122 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~-----P~~~~~~e~~~~L~~~GaD~IElG~PfsD--P~aDGp~Iq~a~~~Al~~G~ 122 (311)
+.+..+..++.=...+..=|.+++ -+.+++.++++.|++.|+|.|++-....+ +...++ +.
T Consensus 197 ~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~------------~~ 264 (340)
T 3gr7_A 197 LGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYP------------GY 264 (340)
T ss_dssp HHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCT------------TT
T ss_pred HHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCc------------cc
Confidence 455666666544444555566653 34688999999999999999999432211 111121 12
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcC-CcEEEe
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIG-IRGLVV 173 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG-adGvii 173 (311)
+ +++++++|+.+++||+..+-.+. .+.++.+.+.| +|.|.+
T Consensus 265 ~----~~~~~~ik~~~~iPVi~~GgI~s------~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 265 Q----VPFAELIRREADIPTGAVGLITS------GWQAEEILQNGRADLVFL 306 (340)
T ss_dssp T----HHHHHHHHHHTTCCEEEESSCCC------HHHHHHHHHTTSCSEEEE
T ss_pred c----HHHHHHHHHHcCCcEEeeCCCCC------HHHHHHHHHCCCeeEEEe
Confidence 2 35778888889999999875431 23556666777 999988
|
| >1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.42 Score=44.69 Aligned_cols=178 Identities=20% Similarity=0.283 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCCC---CCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPYS---DPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pfs---DP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
+...+.++.+.+.|+..|-| |+|-. |+.. ||++. +.++.||+++.= +++++
T Consensus 59 d~l~~~~~~~~~~Gi~~v~LFgvp~~~~Kd~~gs~A~~~~g~v~------------------~air~iK~~~pd-l~vit 119 (330)
T 1pv8_A 59 KRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAI------------------EAIHLLRKTFPN-LLVAC 119 (330)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECC--------------CCSHHH------------------HHHHHHHHHSTT-SEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCcccCCCccccccCCCCChHH------------------HHHHHHHHHCCC-eEEEE
Confidence 57999999999999999888 88753 2222 34333 245566654211 33442
Q ss_pred --cCcc--------hh-ccC-HH------HHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCe-EEEeC----
Q 021527 147 --YYNP--------IL-KRG-VD------NFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIEL-VLFTT---- 200 (311)
Q Consensus 147 --Y~n~--------i~-~~g-~~------~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~-I~lis---- 200 (311)
.+.+ +. ..| +. ...+. .+++|+|-|--.|+=.......++.+.++|... +...+
T Consensus 120 DvcLc~YT~HGHcGil~~~g~v~ND~Tl~~La~~Als~A~AGAdiVAPSdMMDGrV~aIR~aLd~~G~~~~v~ImsYsaK 199 (330)
T 1pv8_A 120 DVCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAK 199 (330)
T ss_dssp EECCC---------------CHHHHHHHHHHHHHHHHHHHHTCSEEEECC--CCHHHHHHHHHHHTTCTTTCEEBCCCEE
T ss_pred eeecccccCCCceeEECCCCcCccHHHHHHHHHHHHHHHHcCCCeeecccccccHHHHHHHHHHhCCCcCCceEeehhHH
Confidence 2111 12 112 21 23332 367999998767877677888999999999965 55432
Q ss_pred ----------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-C
Q 021527 201 ----------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-T 250 (311)
Q Consensus 201 ----------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~ 250 (311)
|....|-+++... ..+|...++=.- .+ ...+.|+++|+.+ +
T Consensus 200 yASafYGPFRdAa~Sap~~GDRktYQmdpaN~~EAlre~~~Di~EGAD~vMVKP-------al--~YLDIi~~vk~~~p~ 270 (330)
T 1pv8_A 200 FASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDRDVREGADMLMVKP-------GM--PYLDIVREVKDKHPD 270 (330)
T ss_dssp CCCGGGHHHHHCC-------------CCTTCHHHHHHHHHHHHHTTCSBEEEES-------CG--GGHHHHHHHHHHSTT
T ss_pred HhHhhhhHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCceEEEec-------Cc--cHHHHHHHHHHhcCC
Confidence 2222344444332 356654443111 11 2468899999998 9
Q ss_pred CcEEE----e----------eCCCCH-----HHHHHHHHcCCcEEEEhhHhhc
Q 021527 251 KPVAV----G----------FGISKP-----EHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 251 ~Pv~v----G----------fGIst~-----e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+|+++ | -|.-+. |....++++|||++| |.+.+
T Consensus 271 ~P~aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAGAd~Ii--TYfA~ 321 (330)
T 1pv8_A 271 LPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIII--TYYTP 321 (330)
T ss_dssp SCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTCSEEE--ETTHH
T ss_pred CCeEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEe--eecHH
Confidence 99965 1 232222 344567788888886 34443
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.13 Score=49.15 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=86.7
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEEEecCcc
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIALFTYYNP 150 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiilm~Y~n~ 150 (311)
..+.+.+.+.++.+.+.|.+.+++-+-++ . .+..++.++.+|+.+ ++|+.+-. |.
T Consensus 147 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~-----~----------------~~~~~e~v~avR~a~G~d~~l~vDa--n~ 203 (391)
T 2qgy_A 147 KKDTNDYLRQIEKFYGKKYGGIKIYPMLD-----S----------------LSISIQFVEKVREIVGDELPLMLDL--AV 203 (391)
T ss_dssp CCCHHHHHHHHHHHHHTTCSCEEECCCCS-----S----------------HHHHHHHHHHHHHHHCSSSCEEEEC--CC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCCC-----h----------------HHHHHHHHHHHHHHhCCCCEEEEEc--CC
Confidence 45678899999999999999999842221 0 233456777887753 67777743 21
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCC
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~ 230 (311)
-+..+++.++.+.+.++|+..+- .|
T Consensus 204 ------------------------~~~~~~a~~~~~~l~~~~i~~iE--qP----------------------------- 228 (391)
T 2qgy_A 204 ------------------------PEDLDQTKSFLKEVSSFNPYWIE--EP----------------------------- 228 (391)
T ss_dssp ------------------------CSCHHHHHHHHHHHGGGCCSEEE--CS-----------------------------
T ss_pred ------------------------CCCHHHHHHHHHHHHhcCCCeEe--CC-----------------------------
Confidence 12346676777777777776441 11
Q ss_pred CCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEE
Q 021527 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIV 278 (311)
Q Consensus 231 ~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIV 278 (311)
+++...+.++++|+.+++||+.+-.+.++++++++++.| +|.+.+
T Consensus 229 ---~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 274 (391)
T 2qgy_A 229 ---VDGENISLLTEIKNTFNMKVVTGEKQSGLVHFRELISRNAADIFNP 274 (391)
T ss_dssp ---SCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred ---CChhhHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEE
Confidence 111223568888888899999999999999999999766 788876
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.03 Score=51.35 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.++.+|+.+++||+..-.|-++.|+.+...+|||||++|.+...
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~ 147 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALE 147 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSC
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCC
Confidence 3678999998999998877777788999999999999999977654
|
| >4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.022 Score=52.34 Aligned_cols=122 Identities=17% Similarity=0.238 Sum_probs=78.4
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHHH----HHHHHcCCCeEEEeCCCChHHHH------------HHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESLQ----KEAMKNKIELVLFTTPTTPTDRM------------KAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~~----~~~~~~gi~~I~lisp~t~~eri------------~~i~~~---- 214 (311)
-...+++.|++.+|+..- -+.|..++. ..+.++|+.+|+-+.- |-++|- +.....
T Consensus 104 Sa~MLkd~G~~~VIiGHSERR~~fgEtde~V~~K~~~Al~~GL~pIlCVGE-tleeReag~t~~vv~~Ql~~~l~~~~~~ 182 (272)
T 4g1k_A 104 AAGMVAEFGAAYAIVGHSERRAYHGESNETVAAKARRALAAGLTPIVCVGE-TLAEREAGTTEQVVGAQLDAVLAVLSPD 182 (272)
T ss_dssp CHHHHHTTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHcCCCEEEECchhcccccCCCHHHHHHHHHHHHHCCCeEEEEeCC-CHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 456789999999999631 012333333 6678899998887764 334441 111110
Q ss_pred --CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC------CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhh
Q 021527 215 --SEGFVYLVS--SIGVTGARASISGHVQTLLREIKESS------TKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMV 283 (311)
Q Consensus 215 --a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~------~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv 283 (311)
..-.|-|.+ ..| ||.. ..+....+..+.||+.. +++|+.|+.++ |+|+.+++.. ..||+.||.|-.
T Consensus 183 ~~~~vVIAYEPVWAIG-TG~t-At~e~aqevh~~IR~~l~~~~a~~~rIlYGGSV~-~~N~~el~~~~dIDG~LVGgASL 259 (272)
T 4g1k_A 183 EAARIVVAYEPVWAIG-TGKS-ATAEQAQQVHAFLRGRLAAKGAGHVSLLYGGSVK-ADNAAELFGQPDIDGGLIGGASL 259 (272)
T ss_dssp HHTTCEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHTCTTSCEEECSCCC-TTTHHHHHTSTTCCEEEECGGGG
T ss_pred HcCCEEEEECcHhhcc-CCCC-CCHHHHHHHHHHHHHHHHHhhcCCceEEEcCCcC-HhHHHHHhcCCCCCEEEechHhc
Confidence 122344433 333 5643 34556667677777753 58999999997 7999999844 589999998877
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 260 ~ 260 (272)
T 4g1k_A 260 K 260 (272)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.048 Score=52.14 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=35.9
Q ss_pred hHHHHHHHHhhcCCCcEEEeeCC---CCHHHHHHHHHcCCcEEEEh
Q 021527 237 HVQTLLREIKESSTKPVAVGFGI---SKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 237 ~~~~~l~~vk~~~~~Pv~vGfGI---st~e~v~~v~~~GADGvIVG 279 (311)
...+.|+++|+.+++||++. || .++++++.+.++|||+++|+
T Consensus 193 ~~~~~I~~l~~~~~~PVivK-~vg~g~s~e~A~~l~~aGad~I~V~ 237 (365)
T 3sr7_A 193 SWKKHLSDYAKKLQLPFILK-EVGFGMDVKTIQTAIDLGVKTVDIS 237 (365)
T ss_dssp HHHHHHHHHHHHCCSCEEEE-ECSSCCCHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHHHhhCCCEEEE-ECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 35578999999999999986 34 57999999999999999994
|
| >3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.014 Score=54.60 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=71.6
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHH----HHHHHHHHcCCCeEEEeCCCChHHH-----------------HHHHHH
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETE----SLQKEAMKNKIELVLFTTPTTPTDR-----------------MKAIVE 213 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~----~~~~~~~~~gi~~I~lisp~t~~er-----------------i~~i~~ 213 (311)
-...+++.|++.+|+..- -+.|.. +=...+.++|+.+|+-+.-+.. +| ++...+
T Consensus 132 Sa~mLkd~G~~~ViiGHSERR~~f~Etde~V~~Kv~aAl~~GL~pIvCVGEtle-ere~~~~~~g~t~~vv~~Ql~~~l~ 210 (310)
T 3s6d_A 132 SPVCLRDMNVSIVELGHAERRAIFGETDQQVARKAAAAADQGLIPLVCIGEVST-LGPIVSEAIGRAVGECEAQIRPVLE 210 (310)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEECCCSC-CCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCCEEEecccccccccCCCHHHHHHHHHHHHHCCCEEEEEeCCcHH-HhhhhccccccHHHHHHHHHHHHHh
Confidence 456789999999999731 011222 2245678889998887764432 11 111111
Q ss_pred -h---CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHH--HHHcCCcEE
Q 021527 214 -A---SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQ--VAGWGADGV 276 (311)
Q Consensus 214 -~---a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~--v~~~GADGv 276 (311)
. ..-.|-|.+ ..| ||.. ..++...+..+.||+. -+++|+.|++|+ ++++.+ +. -+.||+
T Consensus 211 ~l~~~~~vVIAYEPVWAIG-TGk~-Atpe~aqevh~~IR~~l~~~~~~~a~~vrILYGGSV~-~~n~~~~~l~-~dVDG~ 286 (310)
T 3s6d_A 211 ALPRDAPVIFAYEPVWAIG-KPQP-ARVDHVGAVVSGIRSVIERIDRHRKGEVRILYGGSAG-PGLWGPGGLG-KEVDGM 286 (310)
T ss_dssp HSCTTSCEEEEECCGGGC-------CCHHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEEC-TTTTTTTSGG-GTCSEE
T ss_pred cCCcccceEEEECChhhcc-CCCC-CCHHHHHHHHHHHHHHHHHhhhcccCceeEEEcCccC-HHHHhhhccc-CCCCEE
Confidence 1 112333322 222 5632 3455566666667663 257999999997 677777 54 569999
Q ss_pred EEhhHhhc
Q 021527 277 IVGSAMVK 284 (311)
Q Consensus 277 IVGSaiv~ 284 (311)
.||++-.+
T Consensus 287 LVGgASL~ 294 (310)
T 3s6d_A 287 FLGRFAHD 294 (310)
T ss_dssp EECGGGGS
T ss_pred Eeeheeec
Confidence 99999887
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.047 Score=49.87 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFM 160 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi 160 (311)
...+.|++.|+++++- ...|.-.| .|..- ++.++.+++..++||+.-+- .+.-+.+
T Consensus 147 ~~akrl~~~G~~aVmP---lg~pIGsG------------~Gi~~---~~lI~~I~e~~~vPVI~eGG------I~TPsDA 202 (265)
T 1wv2_A 147 IIARQLAEIGCIAVMP---LAGLIGSG------------LGICN---PYNLRIILEEAKVPVLVDAG------VGTASDA 202 (265)
T ss_dssp HHHHHHHHSCCSEEEE---CSSSTTCC------------CCCSC---HHHHHHHHHHCSSCBEEESC------CCSHHHH
T ss_pred HHHHHHHHhCCCEEEe---CCccCCCC------------CCcCC---HHHHHHHHhcCCCCEEEeCC------CCCHHHH
Confidence 6667777777777744 22232222 23311 46778888888999999652 2335678
Q ss_pred HHHHHcCCcEEEec
Q 021527 161 STVRDIGIRGLVVP 174 (311)
Q Consensus 161 ~~~~~aGadGviip 174 (311)
..+.+.|+|||++.
T Consensus 203 a~AmeLGAdgVlVg 216 (265)
T 1wv2_A 203 AIAMELGCEAVLMN 216 (265)
T ss_dssp HHHHHHTCSEEEES
T ss_pred HHHHHcCCCEEEEC
Confidence 88999999999995
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.24 Score=46.07 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=110.0
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCCh---HHHHHHHHHHHHcCC-CHHHHHHHHHHhh
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADG---PVIQAAATRSLARGT-NFNAILSMLKEVV 135 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDG---p~Iq~a~~~Al~~G~-~~~~~~~~i~~ir 135 (311)
..-.++|+++.+-+.+.+.+++..+.+.|++-|-+ |=|-++. | +.- .|+ +..++++.+++..
T Consensus 71 g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~---g~~~~~~---------~~f~~a~~Lv~~ir~~~ 138 (310)
T 3apt_A 71 GLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGE---RVFRPHP---------EGFRYAAELVALIRERY 138 (310)
T ss_dssp TCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTC---CSCCCCT---------TSCSSHHHHHHHHHHHH
T ss_pred CCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCC---CCCCCCC---------CCCCCHHHHHHHHHHhC
Confidence 45688999999999999999999999999997665 5332220 2 100 012 1223444444432
Q ss_pred ccCCCcEEEEecCcc-hhccCHHHHHH---HHHHcCCcEEEec-CCChhhHHHHHHHHHHcCC--CeEEEeCCCChHHHH
Q 021527 136 PQMSCPIALFTYYNP-ILKRGVDNFMS---TVRDIGIRGLVVP-DVPLEETESLQKEAMKNKI--ELVLFTTPTTPTDRM 208 (311)
Q Consensus 136 ~~~~iPiilm~Y~n~-i~~~g~~~fi~---~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi--~~I~lisp~t~~eri 208 (311)
. .+.-|.+-+|-.. ......+.-++ .=.++|+|.++-- =...+...+|.+.|++.|+ ..++.+.|-++...+
T Consensus 139 g-~~f~igvA~yPE~Hp~~~~~~~d~~~Lk~Kv~aGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~ 217 (310)
T 3apt_A 139 G-DRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIGIPILPGIMPVTSYRQL 217 (310)
T ss_dssp G-GGSEEEEEECTTCCTTSSCHHHHHHHHHHHHHHHCSEEEECCCSCHHHHHHHHHHHHHTTCCSCEECEECCCCCTTHH
T ss_pred C-CCeEEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHHcCCCCeEEEEecccCCHHHH
Confidence 1 1245677666420 11223333333 2346899986553 2233567889999999885 566677777776666
Q ss_pred HHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcE---EEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 209 KAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPV---AVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 209 ~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv---~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
..+.+ ..|. .+|.. +++++.+.-+-|- .+|.-+. .|+++++.+.|++|+=+=|
T Consensus 218 ~~~~~-------------~~Gv--~iP~~---l~~~l~~~~~d~~~~~~~gi~~a-~e~~~~L~~~gv~GiH~yt 273 (310)
T 3apt_A 218 RRFTE-------------VCGA--SIPGP---LLAKLERHQDDPKAVLEIGVEHA-VRQVAELLEAGVEGVHFYT 273 (310)
T ss_dssp HHHHH-------------TSCC--CCCHH---HHHHHHHSTTCHHHHHHHHHHHH-HHHHHHHHHTTCSEEEEEC
T ss_pred HHHHH-------------cCCC--CCCHH---HHHHHHhccCCHHHHHHHHHHHH-HHHHHHHHHCCCCeEEEeC
Confidence 55544 1222 35554 4444444332232 2333333 4889999988999996654
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.05 Score=52.89 Aligned_cols=93 Identities=10% Similarity=-0.040 Sum_probs=60.7
Q ss_pred Ccc-EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCC-CC----------CChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 62 KVA-LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSD-PL----------ADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 62 ~~~-li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsD-P~----------aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
++. +..=|.++.. .+...++++.++++|+|.|-+-+-+.+ .. ..|+.+.. --++
T Consensus 268 ~~P~V~VKi~pd~~-~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p-------------~al~ 333 (415)
T 3i65_A 268 KKPLVFVKLAPDLN-QEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKD-------------ISTK 333 (415)
T ss_dssp SCCEEEEEECSCCC-HHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHH-------------HHHH
T ss_pred CCCeEEEEecCCCC-HHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchH-------------HHHH
Confidence 344 5666666553 357899999999999999999765432 11 12333332 2256
Q ss_pred HHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 130 MLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 130 ~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
+++++++.+ ++||+..+=.. . .+.+.++..+|+|+|.+.
T Consensus 334 ~I~~v~~~v~~~iPIIg~GGI~-----s-~eDa~e~l~aGAd~VqIg 374 (415)
T 3i65_A 334 FICEMYNYTNKQIPIIASGGIF-----S-GLDALEKIEAGASVCQLY 374 (415)
T ss_dssp HHHHHHHHTTTCSCEEECSSCC-----S-HHHHHHHHHHTEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEECCCC-----C-HHHHHHHHHcCCCEEEEc
Confidence 888888877 79999876321 1 234445556899999884
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.41 Score=45.50 Aligned_cols=135 Identities=16% Similarity=0.100 Sum_probs=91.4
Q ss_pred ccEEEEEeCCCC--ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--
Q 021527 63 VALIPYITAGDP--DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-- 138 (311)
Q Consensus 63 ~~li~yi~~G~P--~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-- 138 (311)
..+-.|.+.|+. +.+.+.+.++.+.+.|.+.+++-+- ++ +++..++.++.+|+.+
T Consensus 131 ~~vp~y~~~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~g------~~---------------~~~~~~e~v~avR~a~G~ 189 (389)
T 2oz8_A 131 NRVKAYASGLDFHLDDDAFVSLFSHAASIGYSAFKIKVG------HR---------------DFDRDLRRLELLKTCVPA 189 (389)
T ss_dssp SEEEEEEECCBTTCCHHHHHHHHHHHHHTTCCEEEEECC------CS---------------SHHHHHHHHHHHHTTSCT
T ss_pred CceEEEEeCCCcCCCHHHHHHHHHHHHHhCCCEEEEccC------CC---------------CHHHHHHHHHHHHHhhCC
Confidence 344557666653 6788999999999999999998421 11 2334467888888865
Q ss_pred CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHH--cCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 139 SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK--NKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~--~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++++.+-. |.- +..+++.++.+.+.+ +++..+ =.|
T Consensus 190 ~~~l~vDa--n~~------------------------~~~~~a~~~~~~l~~~g~~i~~i--EqP--------------- 226 (389)
T 2oz8_A 190 GSKVMIDP--NEA------------------------WTSKEALTKLVAIREAGHDLLWV--EDP--------------- 226 (389)
T ss_dssp TCEEEEEC--TTC------------------------BCHHHHHHHHHHHHHTTCCCSEE--ESC---------------
T ss_pred CCeEEEEC--CCC------------------------CCHHHHHHHHHHHHhcCCCceEE--eCC---------------
Confidence 56666632 310 123566667677777 554432 111
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
++++..+.++++++.+ ++||+.+-.+ ++++++++++.| +|.+.++
T Consensus 227 -----------------~~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 227 -----------------ILRHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp -----------------BCTTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred -----------------CCCcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 1112235678888888 8999999999 999999998776 7999997
|
| >1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.88 Score=42.72 Aligned_cols=179 Identities=20% Similarity=0.290 Sum_probs=107.9
Q ss_pred hhhHHHHHHHHHHCCCCEEEE-cCCC----CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE
Q 021527 76 LSTTAEALKLLDSCGSDIIEL-GVPY----SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL 144 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IEl-G~Pf----sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil 144 (311)
.+...+.++.+.+.|+..|-| |+|- .|+.. ||++.+ .++.||+++.= +++
T Consensus 68 id~l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~r------------------air~iK~~~pd-l~V 128 (342)
T 1h7n_A 68 VNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQ------------------GIKFIREYFPE-LYI 128 (342)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHH------------------HHHHHHHHCTT-SEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCChHHH------------------HHHHHHHHCCC-eEE
Confidence 367999999999999999888 8864 34433 454433 45556654311 444
Q ss_pred Ee------cCc----chh-ccC-H------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCC-CeEEEeC--
Q 021527 145 FT------YYN----PIL-KRG-V------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKI-ELVLFTT-- 200 (311)
Q Consensus 145 m~------Y~n----~i~-~~g-~------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi-~~I~lis-- 200 (311)
++ |.. .+. ..| + +...+. .+++|+|-|--.|+=.......++.+.++|. ..+..++
T Consensus 129 itDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~Lak~Als~A~AGAdiVAPSdMMDGrV~aIR~aLd~~G~~~~v~ImsYs 208 (342)
T 1h7n_A 129 ICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYA 208 (342)
T ss_dssp EEEECSTTTBTTCCSSCBCTTSSBCHHHHHHHHHHHHHHHHHHTCSEEEECCCCTTHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred EEeeecccccCCCceeEECCCCcCccHHHHHHHHHHHHHHHHcCCCeeecccccccHHHHHHHHHHHCCCccCceEeech
Confidence 42 221 112 123 1 223332 3679999987778877788889999999999 4343321
Q ss_pred ------------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC
Q 021527 201 ------------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS 249 (311)
Q Consensus 201 ------------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~ 249 (311)
|....|-++++.. ..+|...++=.- .+ ...+.|+++|+.+
T Consensus 209 aKyASafYGPFRdAa~Sap~~GDRktYQmdpaN~~EAlre~~~Di~EGAD~vMVKP-------al--~YLDIi~~vk~~~ 279 (342)
T 1h7n_A 209 AKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADGIIVKP-------ST--FYLDIMRDASEIC 279 (342)
T ss_dssp EEBCSSCCHHHHHHHTCCCSSSCSTTTSBCTTCHHHHHHHHHHHHHTTCSEEEEES-------SG--GGHHHHHHHHHHT
T ss_pred HHHhHHhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCeEEEec-------Cc--cHHHHHHHHHHhc
Confidence 3333454544432 356765553111 11 2468899999998
Q ss_pred -CCcEEE--------------eeCCCCH-----HHHHHHHHcCCcEEEEhhHhhc
Q 021527 250 -TKPVAV--------------GFGISKP-----EHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 250 -~~Pv~v--------------GfGIst~-----e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++|+++ --|.-+. |.+..++++|||++| |.+.+
T Consensus 280 p~~P~aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAGAd~Ii--TYfA~ 332 (342)
T 1h7n_A 280 KDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLII--TYLAP 332 (342)
T ss_dssp TTSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEE--ETTHH
T ss_pred cCCCeEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEE--eecHH
Confidence 999965 1232222 345567788999886 44444
|
| >1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.59 Score=43.52 Aligned_cols=173 Identities=15% Similarity=0.231 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCCC-CCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe--
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPYS-DPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT-- 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pfs-DP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~-- 146 (311)
+...+.++.+.+.|+..|-| |+|-. |+.. ||++.+ .++.||+.+.- +++++
T Consensus 58 d~l~~~~~~~~~lGi~~v~LFgvp~~Kd~~gs~A~~~~g~v~r------------------air~iK~~~pd-l~vitDv 118 (323)
T 1l6s_A 58 KHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVAR------------------MSRICKQTVPE-MIVMSDT 118 (323)
T ss_dssp GGHHHHHHHHHHHTCCEEEEEEECSSCBSSCGGGGSTTSHHHH------------------HHHHHHHHCTT-SEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCccccccCCCCCcHHH------------------HHHHHHHHCCC-eEEEEee
Confidence 57999999999999999887 88752 2222 344332 45556654311 44442
Q ss_pred ----cCc----chhccC-H------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC--------
Q 021527 147 ----YYN----PILKRG-V------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT-------- 200 (311)
Q Consensus 147 ----Y~n----~i~~~g-~------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis-------- 200 (311)
|.. .+...| + +...+. .+++|+|-|--.|.=.......++.+.++|...+...+
T Consensus 119 cLc~YT~HGHcGil~~g~V~ND~Tl~~Lak~Als~A~AGAdiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASa 198 (323)
T 1l6s_A 119 CFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASS 198 (323)
T ss_dssp CSTTTBSSCCSSCBCSSSBCHHHHHHHHHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEBCCCEEBCCS
T ss_pred eccccCCCCceEeccCCcCccHHHHHHHHHHHHHHHHcCCCeEecccccccHHHHHHHHHHhCCCCCceeeehhHHHhHH
Confidence 211 122223 1 223332 36799999877788777888899999999997665432
Q ss_pred -----------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE-
Q 021527 201 -----------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV- 255 (311)
Q Consensus 201 -----------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v- 255 (311)
|....|-+++... ..+|...++=.- .++ ..+.|+++|+.+++|+++
T Consensus 199 fYGPFRdAa~Sap~GDRktYQmdpaN~~EAlre~~~Di~EGAD~vMVKP-------al~--YLDIi~~vk~~~~~P~aaY 269 (323)
T 1l6s_A 199 FYGPFREAAGSALKGDRKSYQMNPMNRREAIRESLLDEAQGADCLMVKP-------AGA--YLDIVRELRERTELPIGAY 269 (323)
T ss_dssp CCHHHHHHHTCCCSSCCTTTSBCTTCHHHHHHHHHHHHHTTCSBEEEES-------CTT--CHHHHHHHHTTCSSCEEEE
T ss_pred hhHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCceEEEec-------Ccc--hhHHHHHHHHhcCCCeEEE
Confidence 2223344444432 356654443111 122 368899999999999965
Q ss_pred ---e----------eCCCC-----HHHHHHHHHcCCcEEE
Q 021527 256 ---G----------FGISK-----PEHVQQVAGWGADGVI 277 (311)
Q Consensus 256 ---G----------fGIst-----~e~v~~v~~~GADGvI 277 (311)
| -|.-+ -|....++.+|||++|
T Consensus 270 qVSGEYAMikaAa~~GwiD~~~~vlEsl~~~kRAGAd~Ii 309 (323)
T 1l6s_A 270 QVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIF 309 (323)
T ss_dssp ECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEE
T ss_pred EcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEe
Confidence 0 22222 2344566788888876
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.3 Score=46.17 Aligned_cols=134 Identities=12% Similarity=0.011 Sum_probs=89.3
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEEEecCcc
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIALFTYYNP 150 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiilm~Y~n~ 150 (311)
..+.+.+.+.++.+.+.|.+.+.+-+- .++. | ..-+.+...+.++.+|+.+ ++++.+-. |.
T Consensus 147 ~~~~e~~~~~a~~~~~~Gf~~iKik~g--~~~~-~------------~~~~~~~~~e~v~avr~a~g~d~~l~vDa--n~ 209 (382)
T 1rvk_A 147 LATPEDYGRFAETLVKRGYKGIKLHTW--MPPV-S------------WAPDVKMDLKACAAVREAVGPDIRLMIDA--FH 209 (382)
T ss_dssp TSSHHHHHHHHHHHHHHTCSEEEEECC--CTTS-T------------TCCCHHHHHHHHHHHHHHHCTTSEEEEEC--CT
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEcCC--cCcc-c------------cccchHHHHHHHHHHHHHhCCCCeEEEEC--CC
Confidence 366788999999999999999998421 1100 0 0113455567888888753 57777643 21
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCC
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~ 230 (311)
-+..+++.++.+.+.++|+..+- .|
T Consensus 210 ------------------------~~~~~~a~~~~~~l~~~~i~~iE--~P----------------------------- 234 (382)
T 1rvk_A 210 ------------------------WYSRTDALALGRGLEKLGFDWIE--EP----------------------------- 234 (382)
T ss_dssp ------------------------TCCHHHHHHHHHHHHTTTCSEEE--CC-----------------------------
T ss_pred ------------------------CCCHHHHHHHHHHHHhcCCCEEe--CC-----------------------------
Confidence 11235666677777777776431 11
Q ss_pred CCCCCchHHHHHHHHhhcCCCcEEEeeCCCC-HHHHHHHHHcC-CcEEEEhhH
Q 021527 231 RASISGHVQTLLREIKESSTKPVAVGFGISK-PEHVQQVAGWG-ADGVIVGSA 281 (311)
Q Consensus 231 ~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst-~e~v~~v~~~G-ADGvIVGSa 281 (311)
++++..+.++++++.+++||+.+-.+.+ +++++++++.| +|.+.+--.
T Consensus 235 ---~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~ 284 (382)
T 1rvk_A 235 ---MDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVN 284 (382)
T ss_dssp ---SCTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred ---CChhhHHHHHHHHhhCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCch
Confidence 1112235688888888999999999999 99999998776 799988433
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=1.2 Score=41.54 Aligned_cols=204 Identities=16% Similarity=0.199 Sum_probs=125.6
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.|+..++.| -++-.|= -.+++...-++++.++.+..+|-=-- .| .+. . .| .+-+..
T Consensus 5 ~~~ll~~A~~~~-yAV~AfN---v~n~e~~~avi~AAee~~sPvIlq~s-------~g-~~~----y---~g--~~~~~~ 63 (307)
T 3n9r_A 5 GNEILLKAHKEG-YGVGAFN---FVNFEMLNAIFEAGNEENSPLFIQAS-------EG-AIK----Y---MG--IDMAVG 63 (307)
T ss_dssp HHHHHHHHHHHT-CCEEEEE---CSSHHHHHHHHHHHHHHTCCEEEEEE-------HH-HHH----H---HC--HHHHHH
T ss_pred HHHHHHHHHHcC-ceEEEEe---eCCHHHHHHHHHHHHHhCCCEEEEcC-------hh-hhh----h---CC--HHHHHH
Confidence 466777766554 3454454 34678888899999999888754321 12 010 0 11 122334
Q ss_pred HHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE----E
Q 021527 130 MLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL----F 198 (311)
Q Consensus 130 ~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~----l 198 (311)
+++...++ .++||.|-. -+..-.+.+..|.++|.+.|.+ ..+|+|| ..++.+.++++|+.+=- +
T Consensus 64 ~v~~aa~~~~~VPValHL-----DHg~~~e~~~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~i 138 (307)
T 3n9r_A 64 MVKIMCERYPHIPVALHL-----DHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRL 138 (307)
T ss_dssp HHHHHHHHSTTSCEEEEE-----EEECSHHHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred HHHHHHHhcCCCcEEEEC-----CCCCCHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeee
Confidence 55555555 789998853 1111246788899999999988 4688887 67788899988874211 0
Q ss_pred ------e------CCCChHHHHHHHHHhCCceEEE-E---ecCCccC--CCCCCCchHHHHHHHHhhcCCCcEEE--ee-
Q 021527 199 ------T------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTG--ARASISGHVQTLLREIKESSTKPVAV--GF- 257 (311)
Q Consensus 199 ------i------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG--~~~~~~~~~~~~l~~vk~~~~~Pv~v--Gf- 257 (311)
+ .--|.++..++..+.. |...+ + +..|.+- ....++ .+.|+++++..++|++. |.
T Consensus 139 gG~Ed~~~~~~~~~~yT~Peea~~Fv~~T-gvD~LAvaiGt~HG~Yk~~~~p~Ld---~~~L~~I~~~~~~PLVlHGgS~ 214 (307)
T 3n9r_A 139 MGIEDNISVDEKDAVLVNPKEAEQFVKES-QVDYLAPAIGTSHGAFKFKGEPKLD---FERLQEVKRLTNIPLVLHGASA 214 (307)
T ss_dssp CCC----------CCSCCHHHHHHHHHHH-CCSEEEECSSCCSSSBCCSSSCCCC---HHHHHHHHHHHCSCEEESSCCC
T ss_pred ccccCCcccccccccCCCHHHHHHHHHHH-CCCEEEEecCCcccccCCCCCCccC---HHHHHHHHhcCCCCeEEeCCCC
Confidence 0 0113345555555432 43344 2 3344331 111233 35677777777899866 55
Q ss_pred --------------------CCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 258 --------------------GISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 258 --------------------GIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|+. .|++++..+.|.-=+=|+|.+-.
T Consensus 215 vp~~~~~~~~~~gg~~~~~~G~p-~e~i~~ai~~GV~KiNi~Tdl~~ 260 (307)
T 3n9r_A 215 IPDNVRKSYLDAGGDLKGSKGVP-FEFLQESVKGGINKVNTDTDLRI 260 (307)
T ss_dssp CCHHHHHHHHHTTCCCTTCBCCC-HHHHHHHHHTTEEEEEECHHHHH
T ss_pred cchHHHHHHHHhcCccCCCCCCC-HHHHHHHHHcCceEEEechHHHH
Confidence 776 79999999999888889987653
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.19 Score=48.07 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=92.4
Q ss_pred EEEEE-eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCH-HHHHHHHHHhhccC--CC
Q 021527 65 LIPYI-TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNF-NAILSMLKEVVPQM--SC 140 (311)
Q Consensus 65 li~yi-~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~-~~~~~~i~~ir~~~--~i 140 (311)
+-.|- +.+..+.+.+.+.++.+.+.|.+.+++-. .|+ | .++ +...+.++.+|+.+ ++
T Consensus 134 vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~---spv--G--------------~~~~~~~~e~v~avr~a~G~d~ 194 (401)
T 2hzg_A 134 KRPYASLLFGDTPQETLERARAARRDGFAAVKFGW---GPI--G--------------RGTVAADADQIMAAREGLGPDG 194 (401)
T ss_dssp BEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEES---TTT--T--------------SSCHHHHHHHHHHHHHHHCSSS
T ss_pred eEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcC---CCC--C--------------CCHHHHHHHHHHHHHHHhCCCC
Confidence 44453 33345678889999999999999999853 232 1 133 34456788887754 67
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
|+.+-. |.-+. ...+++.++.+.+.++|+..+- .|
T Consensus 195 ~l~vDa--n~~~~----------------------~~~~~a~~~~~~l~~~~i~~iE--qP------------------- 229 (401)
T 2hzg_A 195 DLMVDV--GQIFG----------------------EDVEAAAARLPTLDAAGVLWLE--EP------------------- 229 (401)
T ss_dssp EEEEEC--TTTTT----------------------TCHHHHHTTHHHHHHTTCSEEE--CC-------------------
T ss_pred eEEEEC--CCCCC----------------------CCHHHHHHHHHHHHhcCCCEEE--CC-------------------
Confidence 777643 31110 0235666666777777776441 11
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhh-cCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHh
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKE-SSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAM 282 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~-~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSai 282 (311)
++++..+.++++++ .+++||+.+-.+.++++++++++.| +|++.+--.-
T Consensus 230 -------------~~~~d~~~~~~l~~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 280 (401)
T 2hzg_A 230 -------------FDAGALAAHAALAGRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGR 280 (401)
T ss_dssp -------------SCTTCHHHHHHHHTTCCSSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHH
T ss_pred -------------CCccCHHHHHHHHhhCCCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcch
Confidence 11122456888888 8899999999999999999998665 7999885433
|
| >2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.11 Score=52.12 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHHHHCC-----CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-----cCCCcEEE
Q 021527 75 DLSTTAEALKLLDSCG-----SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-----QMSCPIAL 144 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~G-----aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-----~~~iPiil 144 (311)
+.+..++.++.+.+.| ||+|-+|...+.|-+...-.+.-. +.+...|+.+++ ..++||-+
T Consensus 247 ~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRPGa~~vs~eEEl----------~RvvpvI~~i~~~~~~~~~~vpISI 316 (545)
T 2bmb_A 247 DIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPNSIQASEEEEI----------RRSIPLIKAIRESTELPQDKVILSI 316 (545)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCSTTCCCCCHHHHH----------HHHHHHHHHHHHCSSSCGGGEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCCCCCCCCHHHHH----------HHHHHHHHHHHhhccccCCCCeEEE
Confidence 6789999999999999 999999997777755433222222 234567777775 24789999
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHc-CCCeEEE
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKN-KIELVLF 198 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~-gi~~I~l 198 (311)
.+|- .+-++.+.++|+|- |.|+.-+. ..++.+.++++ |...|.+
T Consensus 317 DT~~--------a~VaeaAl~aGadI--INDVsg~~~d~~m~~vva~~~~~~vVlm 362 (545)
T 2bmb_A 317 DTYR--------SNVAKEAIKVGVDI--INDISGGLFDSNMFAVIAENPEICYILS 362 (545)
T ss_dssp ECCC--------HHHHHHHHHTTCCE--EEETTTTSSCTTHHHHHHTCTTSEEEEE
T ss_pred eCCc--------HHHHHHHHHcCCCE--EEeCCCCcCChHHHHHHHHhCCCeEEEE
Confidence 8874 34677888899886 55554321 23466778899 9887776
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.04 Score=49.58 Aligned_cols=114 Identities=22% Similarity=0.214 Sum_probs=70.0
Q ss_pred HHHHHHHcCCcEEEec-CCC------hhhHHHHHHHHHHcCCCe-EEEeCCCChHHHHHHHHHh--CCceEEEEecCCcc
Q 021527 159 FMSTVRDIGIRGLVVP-DVP------LEETESLQKEAMKNKIEL-VLFTTPTTPTDRMKAIVEA--SEGFVYLVSSIGVT 228 (311)
Q Consensus 159 fi~~~~~aGadGviip-Dlp------~ee~~~~~~~~~~~gi~~-I~lisp~t~~eri~~i~~~--a~gfiY~vs~~G~T 228 (311)
-++.+.+.|+|.|=+. ++. .+|...+++.|.++|+.+ +.+-+...+++.+...++. ..|..|+=+.+|.+
T Consensus 93 e~~~Av~~GAdEID~vinig~~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~ria~eaGADfVKTsTG~~ 172 (234)
T 1n7k_A 93 EAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVY 172 (234)
T ss_dssp HHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSS
T ss_pred HHHHHHHcCCCEEEEeccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 4567888999988552 222 245666778888877632 1221211123444444443 35777776666654
Q ss_pred CCCCCCCchHHHHHHH--HhhcCCCcEEEeeCCCCHHHHHHHHHcCCc--EE
Q 021527 229 GARASISGHVQTLLRE--IKESSTKPVAVGFGISKPEHVQQVAGWGAD--GV 276 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~--vk~~~~~Pv~vGfGIst~e~v~~v~~~GAD--Gv 276 (311)
+.. +... +-++. +++.+.+||-+.+||++.+++.++.++||+ |+
T Consensus 173 ~~~-gAt~---~dv~l~~m~~~v~v~VKaaGGirt~~~al~~i~aGa~RiG~ 220 (234)
T 1n7k_A 173 TKG-GDPV---TVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADIIGT 220 (234)
T ss_dssp CCC-CSHH---HHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCC-CCCH---HHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHHcCccccch
Confidence 311 1111 22333 555545999999999999999999999999 76
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.2 Score=47.32 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=74.2
Q ss_pred HHHHHHHcCCcEEEe-----cCCChh-------hHHHHHHHHHHcCCCeEE--EeCCC-----Ch-------HHHHHHHH
Q 021527 159 FMSTVRDIGIRGLVV-----PDVPLE-------ETESLQKEAMKNKIELVL--FTTPT-----TP-------TDRMKAIV 212 (311)
Q Consensus 159 fi~~~~~aGadGvii-----pDlp~e-------e~~~~~~~~~~~gi~~I~--lisp~-----t~-------~eri~~i~ 212 (311)
.++.+++.|+|+|-+ ||-+.+ ...++.+.|+++|+.++. +.-|. .+ ++.+...+
T Consensus 115 sve~a~~~GADAVk~lv~~g~d~~~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~ 194 (332)
T 3iv3_A 115 SIKRLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAM 194 (332)
T ss_dssp CHHHHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHH
T ss_pred CHHHHHHcCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHH
Confidence 578899999998876 555532 366788999999999887 43232 11 12233333
Q ss_pred HhC--C--ce-EEEEecCCccCCCC---CC-------C-chHHHHHHHHhhcCCCcEE-EeeCCCCH---HHHHHHHHcC
Q 021527 213 EAS--E--GF-VYLVSSIGVTGARA---SI-------S-GHVQTLLREIKESSTKPVA-VGFGISKP---EHVQQVAGWG 272 (311)
Q Consensus 213 ~~a--~--gf-iY~vs~~G~TG~~~---~~-------~-~~~~~~l~~vk~~~~~Pv~-vGfGIst~---e~v~~v~~~G 272 (311)
+.. . |. ++-+. +||... ++ . .+..+.++++-+.+++|++ .++|.+.. +.++...++|
T Consensus 195 R~~~~~elGaDv~Kve---~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~~~~~fl~~v~~A~~aG 271 (332)
T 3iv3_A 195 KVFSAERFGIDVLKVE---VPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGVSAELFQETLVFAHKAG 271 (332)
T ss_dssp HHHTSGGGCCSEEEEC---CSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred HHHhhcCcCCcEEEEe---cCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence 332 1 33 33343 333221 00 1 1223446666677899965 69998632 2345556899
Q ss_pred C--cEEEEhhHhhch
Q 021527 273 A--DGVIVGSAMVKL 285 (311)
Q Consensus 273 A--DGvIVGSaiv~~ 285 (311)
| .||.+|=++-+.
T Consensus 272 a~f~Gv~~GRnvwq~ 286 (332)
T 3iv3_A 272 AKFNGVLCGRATWAG 286 (332)
T ss_dssp CCCCEEEECHHHHTT
T ss_pred CCcceEEeeHHHHHh
Confidence 9 999999666554
|
| >1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.55 Score=43.85 Aligned_cols=173 Identities=18% Similarity=0.234 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCCC-CCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe--
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPYS-DPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT-- 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pfs-DP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~-- 146 (311)
+...+.++.+.+.|+..|-| |+|-. |+.. ||++.+ .++.||+++.- +++++
T Consensus 64 d~l~~~~~~~~~lGi~~v~LFgvp~~Kd~~gs~A~~~~g~v~r------------------air~iK~~~p~-l~vitDv 124 (328)
T 1w1z_A 64 DRAVEECKELYDLGIQGIDLFGIPEQKTEDGSEAYNDNGILQQ------------------AIRAIKKAVPE-LCIMTDV 124 (328)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECCSSCCSSCGGGGCTTSHHHH------------------HHHHHHHHSTT-SEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCccccccCCCCChHHH------------------HHHHHHHHCCC-eEEEEee
Confidence 57999999999999998776 88752 3322 354433 45556654311 44442
Q ss_pred ----cCc----chhccC-H------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC--------
Q 021527 147 ----YYN----PILKRG-V------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT-------- 200 (311)
Q Consensus 147 ----Y~n----~i~~~g-~------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis-------- 200 (311)
|.. .+...| + +...+. .+++|+|-|--.|+=.......++.+.++|...+...+
T Consensus 125 cLc~YT~HGHcGil~~g~V~ND~Tl~~L~k~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASa 204 (328)
T 1w1z_A 125 ALDPFTPFGHDGLVKDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETDHSDVGILSYAAKYASS 204 (328)
T ss_dssp CSTTTSTTSCSSEESSSCEEHHHHHHHHHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCT
T ss_pred ecccCCCCCceeeccCCcCccHHHHHHHHHHHHHHHHcCCCeEecccccccHHHHHHHHHHhCCCCCceeeehhHHHhhh
Confidence 211 112223 1 223333 36799999876788777788899999999997555422
Q ss_pred ------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE
Q 021527 201 ------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV 255 (311)
Q Consensus 201 ------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v 255 (311)
|....|-+++... ..+|...++=.- .+ ...+.|+++|+.+++|+++
T Consensus 205 fYGPFRdAa~Sap~fGDrktYQmdpaN~~EAlrE~~~Di~EGAD~vMVKP-------al--~YLDIir~vk~~~~~P~aa 275 (328)
T 1w1z_A 205 FYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKEVELDIVEGADIVMVKP-------GL--AYLDIVWRTKERFDVPVAI 275 (328)
T ss_dssp TCHHHHHHTTCCCCCSCSTTTSBCTTCSHHHHHHHHHHHHHTCSEEEEES-------CG--GGHHHHHHHHHHHCSCEEE
T ss_pred ccchHHHHhccCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcC-------CC--chHHHHHHHHHhcCCCEEE
Confidence 3333454544433 245654443111 11 2468899999999999965
Q ss_pred ----e----------eCCCC-----HHHHHHHHHcCCcEEE
Q 021527 256 ----G----------FGISK-----PEHVQQVAGWGADGVI 277 (311)
Q Consensus 256 ----G----------fGIst-----~e~v~~v~~~GADGvI 277 (311)
| -|.-+ -|....++++|||++|
T Consensus 276 YqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAGAd~Ii 316 (328)
T 1w1z_A 276 YHVSGEYAMVKAAAAKGWIDEDRVMMESLLCMKRAGADIIF 316 (328)
T ss_dssp EECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTCSEEE
T ss_pred EEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEe
Confidence 0 12212 2344566788888876
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.61 Score=42.68 Aligned_cols=108 Identities=9% Similarity=0.091 Sum_probs=67.3
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCc-
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYN- 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n- 149 (311)
-.++.+...+.++.+.+.|+|+||+=+=|-+... ..+++.+.++.+|+.. ++|+++- +-.
T Consensus 47 ~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~-----------------~~~~v~~~l~~lr~~~~~~PiI~T-~Rt~ 108 (276)
T 3o1n_A 47 MGKTITDVKSEALAYREADFDILEWRVDHFANVT-----------------TAESVLEAAGAIREIITDKPLLFT-FRSA 108 (276)
T ss_dssp CCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTT-----------------CHHHHHHHHHHHHHHCCSSCEEEE-CCBG
T ss_pred CCCCHHHHHHHHHHHhhCCCCEEEEEeccccccC-----------------cHHHHHHHHHHHHHhcCCCCEEEE-EEEh
Confidence 3688899999999998899999999544322111 1245567788888776 7998764 221
Q ss_pred ---chhccCHH---HHHHHHHHcC-CcEEEe-cCCChhhHHHHHHHHHHcCCCeEE
Q 021527 150 ---PILKRGVD---NFMSTVRDIG-IRGLVV-PDVPLEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 150 ---~i~~~g~~---~fi~~~~~aG-adGvii-pDlp~ee~~~~~~~~~~~gi~~I~ 197 (311)
..+....+ +.++.+.+.| +|-+=+ -+.+.+...++.+.+++.|.++|.
T Consensus 109 ~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~ 164 (276)
T 3o1n_A 109 KEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIM 164 (276)
T ss_dssp GGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEE
Confidence 11222223 3555667778 777522 122323355666667888887664
|
| >3ijd_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: C2F; 2.00A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.63 Score=43.49 Aligned_cols=238 Identities=9% Similarity=0.097 Sum_probs=129.3
Q ss_pred hhHHHHHHHHHHHcCC-ccE-EEEEeCCCCC-hhhHH----HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 021527 47 TVGLAETFTRLKKQGK-VAL-IPYITAGDPD-LSTTA----EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA 119 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~-~~l-i~yi~~G~P~-~~~~~----e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~ 119 (311)
|+.+.+.+. +++ ..| .-++.|=... .+... +.++.|.+.+.|.+-+ |. ..+|.. ..-..|-..
T Consensus 1 ~~~l~~~~~----~~~~~~~SfE~fPPk~~~~~e~l~~~a~~~l~~l~~l~pdf~v~---Yg--a~g~s~-r~~~~rt~~ 70 (315)
T 3ijd_A 1 MSLLKQKIL----NRESGIITYGITPPKKNNTEEKIKEISQKHIERISGLDIDGLVI---YD--LQDEKE-RVSEERPFP 70 (315)
T ss_dssp --CHHHHHH----TTCSCCEEEEECCCBSSSCHHHHHHHHHHHHHHHHTSCCSEEEE---CC--CC--------------
T ss_pred ChhHHHHHh----cCCCceEEEEeeCcCCCccHHHHHHHHHHHHHHHHhCCCCEEEE---CC--CCCCCC-CCCCCCCcc
Confidence 445566654 343 333 3344444333 34555 4677999999999733 21 112211 000001000
Q ss_pred cCCCHHHHHHHHHHhhccCCCcEEEE-ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhh-----HHHHHHHHHHcC-
Q 021527 120 RGTNFNAILSMLKEVVPQMSCPIALF-TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-----TESLQKEAMKNK- 192 (311)
Q Consensus 120 ~G~~~~~~~~~i~~ir~~~~iPiilm-~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-----~~~~~~~~~~~g- 192 (311)
.--|+ +..++++++++++++|.+.. +..| .-+-.+++.++.+++.|++.++-.|.|-++ .....+..++++
T Consensus 71 f~~T~-d~~~~~~~i~~~~gi~~v~Hltc~~-~t~~ei~~~L~~~~~~GI~niLRGDpp~~~~~~~~~~~A~~l~~~~~~ 148 (315)
T 3ijd_A 71 FIETI-DPQIYSENYLKDLKIPKIIYRCVGK-YTPDEFRRLTRPVSGQDAFSVFVGAASRNQSVLLKLSDAYKIRQDVNP 148 (315)
T ss_dssp CCCBC-CHHHHHHHHCTTSCSCEEEEEEGGG-SCHHHHHHHHSCCTTCCCEEEEECCCC----CCSCHHHHHHHHHHHCT
T ss_pred ccccc-cHHHHHHHHHHHhCCCceeeeeeCC-CCHHHHHHHHHHHHHcCCcEEecCCCCCCCCCCcCHHHHHHHHHhcCC
Confidence 00011 23457888998888886554 3222 112234566677888999999889977432 222233344443
Q ss_pred -CCeEEEeCCCC-h-----HHHHHHHHHhCCceEEEEecCCccCCCCCCC-chHHHHH----HHHhhc-C-CCcEEEeeC
Q 021527 193 -IELVLFTTPTT-P-----TDRMKAIVEASEGFVYLVSSIGVTGARASIS-GHVQTLL----REIKES-S-TKPVAVGFG 258 (311)
Q Consensus 193 -i~~I~lisp~t-~-----~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l----~~vk~~-~-~~Pv~vGfG 258 (311)
+..-.-..|.. + .+++++ +...|..|++|-. -.+ ....+++ +++|+. . ++||+.|.=
T Consensus 149 ~F~IGvA~yPe~H~~~~~d~~~Lk~--KvdAGAdf~ITQ~-------ffD~e~~~~f~~~~~~~~r~~Gi~~vPIipGIm 219 (315)
T 3ijd_A 149 DLLLGGVAIPERHMKNTDEHLRIID--KINKGCKYFITQA-------VYNVEAAKDFLSDYYYYSKNNNLKMVPIIFTLT 219 (315)
T ss_dssp TSEEEEEECGGGHHHHSCHHHHHHH--HHHTTCCEEEESC-------CCCHHHHHHHHHHHHHHHHHTTBCCCCEEEEEC
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHH--HHHCCCCEEEccc-------cCCHHHHHHHHHHHHHHHHHCCCCCCcEEEEee
Confidence 33333345654 1 234332 3346766776522 233 3456677 455553 5 799999987
Q ss_pred -CCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCC-chhHHHHHHHHHHHHHh
Q 021527 259 -ISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS-PEEGLKELEKFAKSLKS 308 (311)
Q Consensus 259 -Ist~e~v~~v~~~GADGvIVGSaiv~~~~~~~~-~~~~~~~~~~~~~~l~~ 308 (311)
|.|..+++.+. + -|+-|=..+.+.++...+ .+.+++-..+++++|.+
T Consensus 220 Pi~s~k~~~f~~-~--~G~~IP~~l~~~l~~~~d~~~~Gi~~a~e~~~~L~~ 268 (315)
T 3ijd_A 220 PCGSTKTLEFMK-W--LGISIPRWLENDLMNCEDILNKSVSLSKSIFNELME 268 (315)
T ss_dssp CCCSHHHHHHHH-H--HTCCCCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHh-c--CCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 78899987654 3 577788889998876443 35667777777777764
|
| >1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.99 Score=42.90 Aligned_cols=214 Identities=12% Similarity=0.116 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCH---
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNF--- 124 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~--- 124 (311)
+.+.+.|+..++.+ -++-.|= -.+++...-++++.++.++.+|-=- ..|-. + ..-..|...
T Consensus 15 ~~~~~ll~~A~~~~-yAVpAfN---v~n~e~~~Avl~AAee~~sPvIlq~-------s~g~~-~----~~~g~~~~~~~~ 78 (358)
T 1dos_A 15 DDVQKVFQVAKENN-FALPAVN---CVGTDSINAVLETAAKVKAPVIVQF-------SNGGA-S----FIAGKGVKSDVP 78 (358)
T ss_dssp HHHHHHHHHHHHTT-CCEEEEE---CCSHHHHHHHHHHHHHHTCCEEEEE-------CHHHH-H----HHHCTTSCCCST
T ss_pred hHHHHHHHHHHHCC-ceEEEEe---eCCHHHHHHHHHHHHHhCCCEEEEC-------ChhHH-H----HhcCCCccccch
Confidence 45788888877665 4554454 3467888889999999999876432 11100 0 000001100
Q ss_pred --------HHHHHHHHHhhccCCCcEEEEec-CcchhccCHHHHHHHHHHc-----------CCcEEEe--cCCChhh--
Q 021527 125 --------NAILSMLKEVVPQMSCPIALFTY-YNPILKRGVDNFMSTVRDI-----------GIRGLVV--PDVPLEE-- 180 (311)
Q Consensus 125 --------~~~~~~i~~ir~~~~iPiilm~Y-~n~i~~~g~~~fi~~~~~a-----------GadGvii--pDlp~ee-- 180 (311)
-.+..+++.+.++.++||.|-.- .... - -.+++.+.++ |.+.+.+ ..+|+||
T Consensus 79 ~~~~i~ga~~~~~~v~~~A~~~~VPVaLHlDHg~~~---~-~~~i~~~i~a~~~~~~~~~~~gFtSVMiDgS~~p~eENI 154 (358)
T 1dos_A 79 QGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKK---L-LPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENI 154 (358)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGG---G-HHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHH
T ss_pred hhhHHHhHHHHHHHHHHHHHHCCCCEEEECCCCCCc---c-HHHHHHHHHHHHHHHHhcccCCCceEeecCCCCCHHHHH
Confidence 01245677777778899998741 1110 0 1344444443 4899877 4688887
Q ss_pred --HHHHHHHHHHcCCCeEE----------EeC--------CCChHHHHHHHHHhCCceE---EE-E---ecCCcc-CCCC
Q 021527 181 --TESLQKEAMKNKIELVL----------FTT--------PTTPTDRMKAIVEASEGFV---YL-V---SSIGVT-GARA 232 (311)
Q Consensus 181 --~~~~~~~~~~~gi~~I~----------lis--------p~t~~eri~~i~~~a~gfi---Y~-v---s~~G~T-G~~~ 232 (311)
..++.+.+++.|+.+=- -+. --|.++...+..+...|.. .+ + +..|++ ....
T Consensus 155 ~~Tkevv~~ah~~gvsVEaELG~vGG~EDgv~~~~~~~~~~yT~Peea~~fv~~ttgvd~~d~LAvaiGt~HG~Yk~g~p 234 (358)
T 1dos_A 155 EICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNV 234 (358)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccCcCCCccccccccccccCCHHHHHHHHHHhcCCChhceEEEecccccCccCCCCC
Confidence 67788889888763211 010 1144455555655422221 22 2 444544 1223
Q ss_pred CCCchHHHHHHHHhhc---------CCCcEEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 233 SISGHVQTLLREIKES---------STKPVAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 233 ~~~~~~~~~l~~vk~~---------~~~Pv~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.++.+ .|+++++. +++|++. |.|+. .|++++..+.|.-=+=|+|.+-..
T Consensus 235 ~L~~~---~L~~i~~~i~~~~g~~~~~vpLVlHGgSG~~-~e~i~~ai~~GV~KiNi~Tdl~~A 294 (358)
T 1dos_A 235 VLTPT---ILRDSQEYVSKKHNLPHNSLNFVFHGGSGST-AQEIKDSVSYGVVKMNIDTDTQWA 294 (358)
T ss_dssp CCCTH---HHHHHHHHHHHHHTCCTTCSCEEECSCTTCC-HHHHHHHHHTTEEEEEECHHHHHH
T ss_pred CcCHH---HHHHHHHHHHHHhCCCCCCCcEEEeCCCCCC-HHHHHHHHHCCCeEEEEcHHHHHH
Confidence 44544 44444442 5789866 66775 799999999998888888877543
|
| >3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ... | Back alignment and structure |
|---|
Probab=95.71 E-value=1.2 Score=40.51 Aligned_cols=190 Identities=16% Similarity=0.101 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.+.++.++++..|+ +-...|+.+...++++.+.. .++++++|.++-. ..||-+ +
T Consensus 18 ~~~~~l~~~~~~k~~~Li--VALD~~~~~~al~l~~~l~~-~v~~~KvG~~l~~--~~G~~~-----------------v 75 (260)
T 3eww_A 18 PVASKLLRLMQKKETNLC--LSADVSLARELLQLADALGP-SICMLKTHVDILN--DFTLDV-----------------M 75 (260)
T ss_dssp HHHHHHHHHHHHHTCCEE--EECCCSCHHHHHHHHHHHGG-GCSEEEECGGGCT--TCCHHH-----------------H
T ss_pred cHHHHHHHHHHhcCCCEE--EEeCCCCHHHHHHHHHHhCC-CceEEEEcHHHHH--HhCHHH-----------------H
Confidence 344444444433344454 33466899999999999865 5999999999832 235321 2
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHH-------HcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeC
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVR-------DIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~-------~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lis 200 (311)
+.++++.+..+.+|++..-+.++- +-+..+. ..|+|.+.++-..-.+ ...+++..+..++.+..+.+
T Consensus 76 ~~L~~~a~~~g~~VflDlK~~DIp-----nTv~~a~~~a~~~~~~~ad~vTVha~~G~~~~~aa~~~~~~~~~gv~vLts 150 (260)
T 3eww_A 76 KELITLAKCHEFLIFENRKFADIG-----NTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAE 150 (260)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSCH-----HHHHHHHHCTTTCGGGTCSEEEEESTTCTHHHHHHHHHHTTTTCEEEEECC
T ss_pred HHHHHHHhhcCCeEEEEeeccccH-----HHHHHHHHHHHHhhhccCCEEEEeCCCCHHHHHHHHHhhcccCCeEEEEEE
Confidence 233332222467888876554442 2233211 1479999886543233 33344443344555444443
Q ss_pred CCCh--------HHHHHHHHHhC-CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHH--------
Q 021527 201 PTTP--------TDRMKAIVEAS-EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPE-------- 263 (311)
Q Consensus 201 p~t~--------~eri~~i~~~a-~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e-------- 263 (311)
-+.. .+...++++.. .|..=+|... + . + .-+-.+++--||+-..
T Consensus 151 ms~~g~l~~~~~~e~v~~~A~~~~~g~dGvV~s~-----~--~-----------~-~~~~f~~vTPGIr~~~~~~~~~~r 211 (260)
T 3eww_A 151 MSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGS-----R--V-----------S-MKPEFLHLTPGVQLEAGGDNLGQQ 211 (260)
T ss_dssp CCSTTCCCCTHHHHHHHHHHHHTTTTEEEEECSS-----C--C-----------C-CCTTSEEEECSBCSSSEECTTSCE
T ss_pred cCCchhcccCCHHHHHHHHHHhccCCCceEEeCh-----h--h-----------c-cCCCcEEECCCcCCCCCCCccCCC
Confidence 2211 13344444443 2333333211 0 0 0 1112345555664100
Q ss_pred --HHHHHH-HcCCcEEEEhhHhhc
Q 021527 264 --HVQQVA-GWGADGVIVGSAMVK 284 (311)
Q Consensus 264 --~v~~v~-~~GADGvIVGSaiv~ 284 (311)
+..++. +.|||-+|||+.|++
T Consensus 212 ~~tp~~a~~~aGad~iVvGR~I~~ 235 (260)
T 3eww_A 212 YNSPQEVIGKRGSDIIIVGRGIIS 235 (260)
T ss_dssp EBCHHHHHTTSCCSEEEESHHHHT
T ss_pred ccCHHHHHHhcCCCEEEEChhhcC
Confidence 244566 799999999999998
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.19 Score=47.97 Aligned_cols=135 Identities=12% Similarity=0.058 Sum_probs=92.2
Q ss_pred cEEEEEeC-CC--CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--C
Q 021527 64 ALIPYITA-GD--PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--M 138 (311)
Q Consensus 64 ~li~yi~~-G~--P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~ 138 (311)
.+-.|.+. |+ .+.+.+.+.++.+.+.|.|.+++-+ ..+ +++..++.++.+|+. .
T Consensus 148 ~vp~y~~~g~~~~~~~e~~~~~a~~~~~~Gf~~vKik~------g~~---------------~~~~~~e~v~avR~avg~ 206 (393)
T 2og9_A 148 SVRCYNTSGGFLHTPIDQLMVNASASIERGIGGIKLKV------GQP---------------DGALDIARVTAVRKHLGD 206 (393)
T ss_dssp EEEEEBCTTCCTTSCHHHHHHHHHHHHHTTCCCEEEEC------CCS---------------CHHHHHHHHHHHHHHHCT
T ss_pred ceEEEEECCCcCCCCHHHHHHHHHHHHHcCCCEEEEec------CCC---------------CHHHHHHHHHHHHHHcCC
Confidence 34456553 33 3778899999999999999999942 111 234446677888875 3
Q ss_pred CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 139 SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
++|+.+-. |. -+..+++.++.+.+.++|+..+- .|
T Consensus 207 d~~l~vDa--n~------------------------~~~~~~a~~~~~~l~~~~i~~iE--~P----------------- 241 (393)
T 2og9_A 207 AVPLMVDA--NQ------------------------QWDRPTAQRMCRIFEPFNLVWIE--EP----------------- 241 (393)
T ss_dssp TSCEEEEC--TT------------------------CCCHHHHHHHHHHHGGGCCSCEE--CC-----------------
T ss_pred CCEEEEEC--CC------------------------CCCHHHHHHHHHHHHhhCCCEEE--CC-----------------
Confidence 67777642 21 12346777777777777776441 11
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
+++...+..+++++.+++||+.+-.+.++++++++++.| +|.+.+-
T Consensus 242 ---------------~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 288 (393)
T 2og9_A 242 ---------------LDAYDHEGHAALALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPD 288 (393)
T ss_dssp ---------------SCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred ---------------CCcccHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeC
Confidence 111224568888888899999999999999999998776 7888764
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.24 Score=47.17 Aligned_cols=184 Identities=13% Similarity=0.146 Sum_probs=102.3
Q ss_pred CccEEEEEeC----CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc
Q 021527 62 KVALIPYITA----GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ 137 (311)
Q Consensus 62 ~~~li~yi~~----G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~ 137 (311)
+..+.+.+|| |.-|.+.+.+.++.+.++|+|.|-+.--- -+++. .+.++-.++++.+.+.
T Consensus 61 ~Gi~~alvTPF~~dg~ID~~al~~lv~~li~~Gv~Gl~v~GTT----GE~~~------------Ls~eEr~~vi~~~ve~ 124 (360)
T 4dpp_A 61 LRVITAIKTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTT----GEGQL------------MSWDEHIMLIGHTVNC 124 (360)
T ss_dssp CCEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTT----TTGGG------------SCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccc----cChhh------------CCHHHHHHHHHHHHHH
Confidence 3444455555 45667899999999999999999884111 11211 3445555566555543
Q ss_pred --CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC-----CChhhHHHHHHHHHHcCCCeEEEeC-----CCChH
Q 021527 138 --MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEETESLQKEAMKNKIELVLFTT-----PTTPT 205 (311)
Q Consensus 138 --~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee~~~~~~~~~~~gi~~I~lis-----p~t~~ 205 (311)
-++||+.-+-.|... ..-+..+.+.++|+|++++.- ...++..++.+.+.+. +..+++=. -+.+.
T Consensus 125 ~~grvpViaGvg~~st~--eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~hf~~IA~a-~PiilYNiP~rTg~~ls~ 201 (360)
T 4dpp_A 125 FGGSIKVIGNTGSNSTR--EAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLHM-GPTIIYNVPGRTGQDIPP 201 (360)
T ss_dssp HTTTSEEEEECCCSSHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHTTGGG-SCEEEEECHHHHSCCCCH
T ss_pred hCCCCeEEEecCCCCHH--HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh-CCEEEEeCCcccCCCCCH
Confidence 468988866544221 123566778899999988841 1235555555555444 45444322 23344
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHH-HHHHHcCCcEEEEhhHh
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHV-QQVAGWGADGVIVGSAM 282 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v-~~v~~~GADGvIVGSai 282 (311)
+-+.++++ -..++.+=. .+|. .. +.+... .+..|+.|.. +.. ...+..|+||+|-|++=
T Consensus 202 e~l~~La~-~pnIvGIKd---ssgd--------~~-i~~~~~-~~f~v~sG~D----~~~l~~~l~~Ga~G~Is~~aN 261 (360)
T 4dpp_A 202 RAIFKLSQ-NPNLAGVKE---CVGN--------KR-VEEYTE-NGVVVWSGND----DECHDSRWDYGATGVISVTSN 261 (360)
T ss_dssp HHHHHHTT-STTEEEEEE---CSCH--------HH-HHHHHH-TTCCEEECCG----GGHHHHHHHSCCCEEEESGGG
T ss_pred HHHHHHhc-CCCEEEEEe---CCCc--------HH-HHHhhC-CCEEEEeCCh----HHHHHHHHHcCCCEEEccchh
Confidence 66666653 344554411 1121 11 222221 2455655542 223 33466899999988753
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.4 Score=44.00 Aligned_cols=172 Identities=16% Similarity=0.100 Sum_probs=98.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -+++ -.+.++-.++++.+++..+- |+.-+-.|..
T Consensus 15 g~iD~~~l~~lv~~li~~Gv~gl~~~Gtt----GE~~------------~Ls~eEr~~v~~~~~~~~~g-viaGvg~~~t 77 (293)
T 1w3i_A 15 NRIDKEKLKIHAENLIRKGIDKLFVNGTT----GLGP------------SLSPEEKLENLKAVYDVTNK-IIFQVGGLNL 77 (293)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTT----TTGG------------GSCHHHHHHHHHHHHTTCSC-EEEECCCSCH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc----cChh------------hCCHHHHHHHHHHHHHHcCC-EEEecCCCCH
Confidence 55677899999999999999999884111 0111 14556667788877766544 5544433322
Q ss_pred hccCHHHHHHHHHHcCCcEEEe--cC----CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCceE
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVV--PD----VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGvii--pD----lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gfi 219 (311)
. ..-+..+.+.++|+|++++ |- ...++..+ |...+...++..+++=.| +.+.+-+.+ -..++
T Consensus 78 ~--~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~----~pnIv 151 (293)
T 1w3i_A 78 D--DAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE----IGCFT 151 (293)
T ss_dssp H--HHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH----HCCEE
T ss_pred H--HHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh----cCCEE
Confidence 1 1234666778899999988 32 22344444 455666678876665333 223344333 23443
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+=. .+| ++ ..+.++++. .+.-|+.|..- .+-..+..|+||+|-|++
T Consensus 152 giKd---s~g-------d~-~~~~~~~~~~~~f~v~~G~d~----~~~~~l~~G~~G~is~~a 199 (293)
T 1w3i_A 152 GVKD---TIE-------NI-IHTLDYKRLNPNMLVYSGSDM----LIATVASTGLDGNVAAGS 199 (293)
T ss_dssp EEEE---CCS-------CH-HHHHHHHHHCTTSEEEECCST----THHHHHHTTCCEEECGGG
T ss_pred EEEe---CCC-------CH-HHHHHHHhcCCCEEEEEccHH----HHHHHHHcCCCEEEeCHH
Confidence 3311 111 12 234444431 24556666543 345566789999999876
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=1.2 Score=42.13 Aligned_cols=211 Identities=16% Similarity=0.177 Sum_probs=114.9
Q ss_pred EEEeCCCC---ChhhHHHHHHHHHHCCCCEEEEcCCC--CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 67 PYITAGDP---DLSTTAEALKLLDSCGSDIIELGVPY--SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 67 ~yi~~G~P---~~~~~~e~~~~L~~~GaD~IElG~Pf--sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
+|+.+|-- +.+...+.++.+.++|+|++=++.-- +.|+. -.|.. ++.++++++.+++.++|
T Consensus 107 ~~vIAgpcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~-------------f~glg-~egl~~l~~~~~e~Gl~ 172 (350)
T 1vr6_A 107 FTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYS-------------FQGLG-EKGLEYLREAADKYGMY 172 (350)
T ss_dssp EEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTS-------------CCCCT-HHHHHHHHHHHHHHTCE
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHh-------------hcCCC-HHHHHHHHHHHHHcCCc
Confidence 45544422 45789999999999999998776433 22211 11222 46688889999899999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC-hHHHHHH----HHHhC-
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT-PTDRMKA----IVEAS- 215 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t-~~eri~~----i~~~a- 215 (311)
++--. +++ .-++.+.+. +|.+-|+--..+... +..++.+.|. +|.+-+..+ +.+.+.. +.+..
T Consensus 173 ~~te~-~d~-------~~~~~l~~~-vd~lkIgAr~~~n~~-LL~~va~~~k-PVilk~G~~~tl~ei~~Ave~i~~~GN 241 (350)
T 1vr6_A 173 VVTEA-LGE-------DDLPKVAEY-ADIIQIGARNAQNFR-LLSKAGSYNK-PVLLKRGFMNTIEEFLLSAEYIANSGN 241 (350)
T ss_dssp EEEEC-SSG-------GGHHHHHHH-CSEEEECGGGTTCHH-HHHHHHTTCS-CEEEECCTTCCHHHHHHHHHHHHHTTC
T ss_pred EEEEe-CCH-------HHHHHHHHh-CCEEEECcccccCHH-HHHHHHccCC-cEEEcCCCCCCHHHHHHHHHHHHHCCC
Confidence 87732 231 123334444 888888743333333 4445556674 566666554 3333222 22222
Q ss_pred CceEEEEecCCcc---CC-CCCCCchHHHHHHHHhhcCCCcEEE----eeCCCC--HHHHHHHHHcCCcEEEEhhHhhc-
Q 021527 216 EGFVYLVSSIGVT---GA-RASISGHVQTLLREIKESSTKPVAV----GFGISK--PEHVQQVAGWGADGVIVGSAMVK- 284 (311)
Q Consensus 216 ~gfiY~vs~~G~T---G~-~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst--~e~v~~v~~~GADGvIVGSaiv~- 284 (311)
..++.|. .|++ +. +..++- ..+..+|+.+++||++ +.|-+. +.-.......||||++|=+-+.-
T Consensus 242 ~~viLce--RG~~typ~~~~~~vdl---~ai~~lk~~~~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~pd 316 (350)
T 1vr6_A 242 TKIILCE--RGIRTFEKATRNTLDI---SAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPE 316 (350)
T ss_dssp CCEEEEE--CCBCCSCCSSSSBCCT---THHHHHHHHBSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGG
T ss_pred CeEEEEe--CCCCCCCCcChhhhhH---HHHHHHHHhhCCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcc
Confidence 2344442 1221 11 222222 3467788878899765 224321 23233445689999999876542
Q ss_pred -hhhhcCCchhHHHHHHHHHHHHHh
Q 021527 285 -LLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 285 -~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.+.++.. .-..+++++++++++.
T Consensus 317 ~al~D~~~-sL~p~e~~~lv~~ir~ 340 (350)
T 1vr6_A 317 KALSDGKQ-SLDFELFKELVQEMKK 340 (350)
T ss_dssp GCSSCGGG-CBCHHHHHHHHHHHHH
T ss_pred cCCCchhh-cCCHHHHHHHHHHHHH
Confidence 2222110 0114566777666654
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.16 Score=47.87 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=88.4
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPI 142 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPi 142 (311)
+-.|.+.|..+.+.+.+.++.+.+.|.+.+.+-+- .+.+.-.+.++.+|+.+ ++|+
T Consensus 131 v~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g----------------------~~~~~~~e~v~avr~a~g~~~~l 188 (369)
T 2p8b_A 131 FPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVG----------------------TNVKEDVKRIEAVRERVGNDIAI 188 (369)
T ss_dssp EECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECC----------------------SCHHHHHHHHHHHHHHHCTTSEE
T ss_pred eeeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeC----------------------CCHHHHHHHHHHHHHHhCCCCeE
Confidence 33444545456678889999999999999998421 12344456777777754 5777
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHH-HHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE-SLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~-~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
.+-. |.- +..+++. ++.+.+.++|+..+- .
T Consensus 189 ~vDa--n~~------------------------~~~~~a~~~~~~~l~~~~i~~iE--q--------------------- 219 (369)
T 2p8b_A 189 RVDV--NQG------------------------WKNSANTLTALRSLGHLNIDWIE--Q--------------------- 219 (369)
T ss_dssp EEEC--TTT------------------------TBSHHHHHHHHHTSTTSCCSCEE--C---------------------
T ss_pred EEEC--CCC------------------------CCHHHHHHHHHHHHHhCCCcEEE--C---------------------
Confidence 5532 311 1124555 565566666665331 1
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSA 281 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSa 281 (311)
.++++..+.++++++.+++||+.+-.+.++++++++++.| +|++.+--.
T Consensus 220 -----------P~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (369)
T 2p8b_A 220 -----------PVIADDIDAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLM 269 (369)
T ss_dssp -----------CBCTTCHHHHHHHHHTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred -----------CCCcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecc
Confidence 1122224568888888899999999999999999998755 799988543
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=1.5 Score=40.77 Aligned_cols=203 Identities=16% Similarity=0.221 Sum_probs=129.5
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.|+..++.| -++-.|= -.+++...-++++.++.+..+|-=. ..|- +.-+ | .+.+..
T Consensus 5 ~~~ll~~A~~~~-yAV~AfN---v~n~e~~~Ail~AAee~~sPvIlq~-------s~g~-~~y~-------g--~~~~~~ 63 (305)
T 1rvg_A 5 GLEILKKAREEG-YGVGAFN---VNNMEFLQAVLEAAEEQRSPVILAL-------SEGA-MKYG-------G--RALTLM 63 (305)
T ss_dssp HHHHHHHHHHHT-CCEEEEE---CCSHHHHHHHHHHHHHTTCCEEEEE-------EHHH-HHHH-------H--HHHHHH
T ss_pred HHHHHHHHHHCC-CEEEEEe---eCCHHHHHHHHHHHHHhCCCEEEEC-------ChhH-HhhC-------C--HHHHHH
Confidence 466777766554 4554454 4567899999999999999876442 1121 1111 1 223345
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE----E-
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL----F- 198 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~----l- 198 (311)
+++...+ .++||.+-. -+..-.+.+..|.+.|.+.+.+ ..+|+|| ..++.+.++++|+.+=- +
T Consensus 64 ~v~~~a~-~~VPValHl-----DHg~~~e~~~~ai~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vg 137 (305)
T 1rvg_A 64 AVELAKE-ARVPVAVHL-----DHGSSYESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLA 137 (305)
T ss_dssp HHHHHHH-CSSCEEEEE-----EEECSHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred HHHHHHh-CCCcEEEEC-----CCCCCHHHHHHHHHcCCCeeeeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 6666666 899998863 1222246788899999999988 4688887 67788889988863210 0
Q ss_pred -------eC----CCChHHHHHHHHHhCCceEEE-E---ecCCccC--CCCCCCchHHHHHHHHhhcCCCcEEE--ee--
Q 021527 199 -------TT----PTTPTDRMKAIVEASEGFVYL-V---SSIGVTG--ARASISGHVQTLLREIKESSTKPVAV--GF-- 257 (311)
Q Consensus 199 -------is----p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG--~~~~~~~~~~~~l~~vk~~~~~Pv~v--Gf-- 257 (311)
.. --|.++..++..+.. |.+.+ + +..|.+- ....++ .+.|+++++.+++|++. |.
T Consensus 138 g~Ed~~~~~~~~~~yT~Peea~~Fv~~T-gvD~LAvaiGt~HG~Yk~~g~p~L~---~~~L~~I~~~~~vpLVlHGgSsv 213 (305)
T 1rvg_A 138 GIEEHVAVDEKDALLTNPEEARIFMERT-GADYLAVAIGTSHGAYKGKGRPFID---HARLERIARLVPAPLVLHGASAV 213 (305)
T ss_dssp CSCC------CCTTCCCHHHHHHHHHHH-CCSEEEECSSCCSSSBCSSSSCCCC---HHHHHHHHHHCCSCEEECSCCCC
T ss_pred CccCCccccccccccCCHHHHHHHHHHH-CCCEEEEecCccccccCCCCCCccC---HHHHHHHHHhcCCCEEEeCCCCC
Confidence 00 114445555555532 44444 2 3444332 111222 36788998988999876 66
Q ss_pred -------------------CCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 258 -------------------GISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 258 -------------------GIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|+. .|++++..+.|.-=+=|+|.+-.
T Consensus 214 ~~~~~~~~~~~gg~~~~~~G~p-~e~i~~ai~~GV~KiNi~Tdl~~ 258 (305)
T 1rvg_A 214 PPELVERFRASGGEIGEAAGIH-PEDIKKAISLGIAKINTDTDLRL 258 (305)
T ss_dssp CHHHHHHHHHTTCCCCSCBCCC-HHHHHHHHHTTEEEEEECHHHHH
T ss_pred cHHHHHHHHhhccccccCCCCC-HHHHHHHHHCCCeEEEEChHHHH
Confidence 775 79999999999888888887743
|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.59 Score=45.52 Aligned_cols=184 Identities=14% Similarity=0.140 Sum_probs=103.3
Q ss_pred HHHHHHHHCCCCEEEEc---CC-----CCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--------------
Q 021527 81 EALKLLDSCGSDIIELG---VP-----YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-------------- 138 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG---~P-----fsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-------------- 138 (311)
-.++.++++|.+.|=+. +- .+.++-|+ .-.+.+++++.+++|...+
T Consensus 76 ~sA~~~~~aGf~Aiy~SG~~vAa~~~~s~~G~PD~------------~~~~~~ev~~~v~~I~~a~~~~d~~~~~~~~~~ 143 (429)
T 1f8m_A 76 NMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQ------------SLYPANSVPQVVRRINNALQRADQIAKIEGDTS 143 (429)
T ss_dssp HHHHHHHHTTCSCEEECHHHHHHHCCTTCCCCCSS------------SCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCCEEEechHHHhcccccccCCCCCc------------ccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 34555667899999883 11 13344443 1245556666666665432
Q ss_pred ----CCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC----------------ChhhH-HHHHHH---HHHc
Q 021527 139 ----SCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV----------------PLEET-ESLQKE---AMKN 191 (311)
Q Consensus 139 ----~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl----------------p~ee~-~~~~~~---~~~~ 191 (311)
.+||++. ||-|+. .+.+.++.+.++|+.|+.+=|- |.+|. .+++.. ....
T Consensus 144 ~~d~~~PIiaD~DtGfG~~~---nv~~tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lvp~~e~v~rI~AAr~A~~~~ 220 (429)
T 1f8m_A 144 VENWLAPIVADGEAGFGGAL---NVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVA 220 (429)
T ss_dssp CSCSSCCEEEECTTTTSSHH---HHHHHHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEECCHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCEEEECCCCCCCcH---HHHHHHHHHHHcCCEEEEEecCCCccccccCCCCCeeeCHHHHHHHHHHHHHHHHhc
Confidence 4999998 466654 2567888999999999999763 33453 233322 2235
Q ss_pred CCCeEEEeC-C--------------------------------CChH---HHHHHHHHhCCceEEEEecCCccCCCCCCC
Q 021527 192 KIELVLFTT-P--------------------------------TTPT---DRMKAIVEASEGFVYLVSSIGVTGARASIS 235 (311)
Q Consensus 192 gi~~I~lis-p--------------------------------~t~~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~ 235 (311)
|.+.++..= . .--+ +|.+.+++ .-..+|+.+ |. ...
T Consensus 221 g~d~vIiARTDa~~a~li~s~~d~~d~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa~-gAD~if~e~-----~~--~~~ 292 (429)
T 1f8m_A 221 DVPTVVIARTDAEAATLITSDVDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAP-FADLIWMET-----GT--PDL 292 (429)
T ss_dssp TCCCEEEEEECTTTCCEESCCCSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-GCSEEEECC-----SS--CCH
T ss_pred CCCEEEEEEechhhhccccccccccccccccCCCCcccccccccCHHHHHHHHHHHHh-cCCEEEeCC-----CC--CCH
Confidence 777665431 1 1112 35555544 334456542 11 123
Q ss_pred chHHHHHHHHhhcCCCcEEEeeC---CC-----CHHH----HHHHHHcCCcEEEEhhHhhchhh
Q 021527 236 GHVQTLLREIKESSTKPVAVGFG---IS-----KPEH----VQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 236 ~~~~~~l~~vk~~~~~Pv~vGfG---Is-----t~e~----v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.++.++.+.++......+++..+ .+ +.++ ..++.++|..-++++.+..+...
T Consensus 293 eei~~f~~~v~~~~P~~~La~n~sPsf~w~~~~~~~~~~~f~~eL~~lG~~~v~~~l~~~raa~ 356 (429)
T 1f8m_A 293 EAARQFSEAVKAEYPDQMLAYNCSPSFNWKKHLDDATIAKFQKELAAMGFKFQFITLAGFHALN 356 (429)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEECCTTSCHHHHCCHHHHHHHHHHHHHHTEEEEEETTHHHHHHH
T ss_pred HHHHHHHHHhcccCCCceeecCCCCCCCcccccchhhHhHHHHHHHHcCCeEEEECcHHHHHHH
Confidence 34566666666533332334322 11 1111 46788899999999999887553
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.28 Score=46.43 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 241 ~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
+.+++|+.+..|+++| |+.+++++.++++.| ||.|-+|-.++.
T Consensus 277 ~a~~ik~~~~~~v~~~-g~~~~~~ae~~l~~G~aD~V~~gR~~la 320 (358)
T 4a3u_A 277 LSPEIRKVFKPPLVLN-QDYTFETAQAALDSGVADAISFGRPFIG 320 (358)
T ss_dssp CHHHHHHHCCSCEEEE-SSCCHHHHHHHHHHTSCSEEEESHHHHH
T ss_pred HHHHHHHhcCCcEEEe-CCCCHHHHHHHHHcCCceEeHhhHHHHh
Confidence 3556677777888776 566799999999988 899999988775
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.25 Score=48.36 Aligned_cols=68 Identities=22% Similarity=0.243 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.++++.+.+..-..+.+.+ ++. -.....+.++++++.+ ++|++ ++||.+.++++.+.++|||++.||.
T Consensus 235 ~~~a~~l~~~G~d~ivi~~----a~g---~~~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg~ 303 (491)
T 1zfj_A 235 FERAEALFEAGADAIVIDT----AHG---HSAGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVKVGI 303 (491)
T ss_dssp HHHHHHHHHHTCSEEEECC----SCT---TCHHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHcCCCeEEEee----ecC---cchhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHHcCCCEEEECc
Confidence 4666666565333333221 221 1234567889999887 89997 6677889999999999999999983
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.43 Score=45.40 Aligned_cols=42 Identities=33% Similarity=0.445 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+.++.+|+.+++||++- |+.++|+++.+.++|+|+++|...
T Consensus 218 ~~~i~~lr~~~~~PvivK-~v~~~e~a~~a~~~Gad~I~vs~~ 259 (368)
T 2nli_A 218 PRDIEEIAGHSGLPVFVK-GIQHPEDADMAIKRGASGIWVSNH 259 (368)
T ss_dssp HHHHHHHHHHSSSCEEEE-EECSHHHHHHHHHTTCSEEEECCG
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHHHHHcCCCEEEEcCC
Confidence 456999999899999987 568899999999999999999543
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=95.48 E-value=0.075 Score=50.74 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHc-------CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC-CCCC------------CChH
Q 021527 49 GLAETFTRLKKQ-------GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY-SDPL------------ADGP 108 (311)
Q Consensus 49 ~i~~~f~~~~~~-------~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf-sDP~------------aDGp 108 (311)
.+.+.+..+++. .+..++.=+.++. +.+++.++++.++++|+|.|.+-+-. +.+. ..|+
T Consensus 200 ~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~-~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~ 278 (367)
T 3zwt_A 200 ELRRLLTKVLQERDGLRRVHRPAVLVKIAPDL-TSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGK 278 (367)
T ss_dssp HHHHHHHHHHHHHHTSCGGGCCEEEEEECSCC-CHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEG
T ss_pred HHHHHHHHHHHHHhhccccCCceEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCc
Confidence 345555554432 2345555565543 34688999999999999999984332 1111 1233
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 109 VIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 109 ~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
.+... -+++++++++.+ ++||+..|-.. . .+.+.++.++|+|+|.+.
T Consensus 279 ~i~p~-------------a~~~v~~i~~~v~~~ipvI~~GGI~-----s-~~da~~~l~~GAd~V~vg 327 (367)
T 3zwt_A 279 PLRDL-------------STQTIREMYALTQGRVPIIGVGGVS-----S-GQDALEKIRAGASLVQLY 327 (367)
T ss_dssp GGHHH-------------HHHHHHHHHHHTTTCSCEEEESSCC-----S-HHHHHHHHHHTCSEEEES
T ss_pred ccchh-------------HHHHHHHHHHHcCCCceEEEECCCC-----C-HHHHHHHHHcCCCEEEEC
Confidence 33221 246888888887 89999976321 1 234555556899999884
|
| >3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.57 Score=45.85 Aligned_cols=225 Identities=14% Similarity=0.084 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
..+.+.+++.++.+..++.. + +-.+++.+.-++++.++.+..+|----+-.=.+ .|.. .|.+.+.+
T Consensus 6 ~~mkelL~~ak~g~~~gi~a-v--~~~n~e~i~Ail~aAee~~sPVIIe~t~~qv~~-~gGY----------tG~~p~~f 71 (450)
T 3txv_A 6 NHLIDIARWSERPGPRGIPS-I--CSAHPLVIEAAMLRAHREKAPVLIEATCNQVNQ-DGGY----------TGMTPEDF 71 (450)
T ss_dssp ---------------CCEEE-E--CCCCHHHHHHHHHHHHHSCSCEEEEEETTTSCT-TCTT----------TTCCHHHH
T ss_pred cCHHHHHHHHHhCCCcEEEE-e--CcCCHHHHHHHHHHHHHhCCCEEEEcChhhHhh-cCCC----------CCCCHHHH
Confidence 34667776655422233322 2 336778888888888888877653321110000 1110 13455677
Q ss_pred HHHHHHhhccCCCcE---EEEe---cCcchhccCH-------HHHHHHHHHcCCcEEEe--cCCChhh------------
Q 021527 128 LSMLKEVVPQMSCPI---ALFT---YYNPILKRGV-------DNFMSTVRDIGIRGLVV--PDVPLEE------------ 180 (311)
Q Consensus 128 ~~~i~~ir~~~~iPi---ilm~---Y~n~i~~~g~-------~~fi~~~~~aGadGvii--pDlp~ee------------ 180 (311)
..+++++.++.++|+ +|-+ --|+.-..+. .+.+..+.++|...|.+ .-+|+||
T Consensus 72 ~~~V~~~A~~~~vPv~pV~LhlDHg~~~~w~~~~~~~am~~a~e~i~~aI~AGFtSVMiD~S~~p~eeNi~lt~evva~r 151 (450)
T 3txv_A 72 TRFVGAIADRIEFPREKILLGGDHLGPNPWKHLPADEAMAKAEAMITAYAKAGFTKLHLDTSMGCAGEPTALPDATTAAR 151 (450)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEEEESSGGGTTSCHHHHHHHHHHHHHHHHTTTCCEEEECCCBCCSSSCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCcCcccEEEECCCCCCcccccccHHHHHHHHHHHHHHHHHcCCCEEEECCCCCchhhccchhHHHHHHH
Confidence 788888887788884 5542 1111111111 46888899999999988 2344443
Q ss_pred HHHHHHHHHHc----CCC-eEEEe-----------------CCCChHHHHHHHHH-------hC-----CceEEEEecCC
Q 021527 181 TESLQKEAMKN----KIE-LVLFT-----------------TPTTPTDRMKAIVE-------AS-----EGFVYLVSSIG 226 (311)
Q Consensus 181 ~~~~~~~~~~~----gi~-~I~li-----------------sp~t~~eri~~i~~-------~a-----~gfiY~vs~~G 226 (311)
..++.+.+.+. |.. +...+ ..|+|++-.+-+.. .+ ...+.++--.|
T Consensus 152 taeL~~~A~~~~~~~g~~e~~yviGtEvpvpGGa~~~~~~~~~T~PeeA~~fv~~~~~~f~~~gld~~w~~v~~lvVqpG 231 (450)
T 3txv_A 152 AARLAAVAEDAVGGRGGVLPVYIIGTEVPIPGGALEELDTLEVTAPEAAIETVRVHRAAFEEAGAAGAFSRVVGAVVQPG 231 (450)
T ss_dssp HHHHHHHHHHTC------CCEEEEECC-------------CCCCCHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEECCCS
T ss_pred HHHHHHHHHHHHhhcCCCCceEEeeeecCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHhCcccccCceeEEEecCC
Confidence 44566777764 332 12211 23555443322221 11 22234432222
Q ss_pred c-cCCCCCCCchHHHHHHHHhhcC-CCc-EEE--ee--CCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 227 V-TGARASISGHVQTLLREIKESS-TKP-VAV--GF--GISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 227 ~-TG~~~~~~~~~~~~l~~vk~~~-~~P-v~v--Gf--GIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
+ .|. ...+.--.+.+++|++.+ +.| ++. |. |+ +.++++++.+.|.--+=||+++...+.+
T Consensus 232 t~f~~-~~v~~y~~e~~~~L~~~v~~~P~LVlhghStDy~-~~e~l~~~V~~GiaklNVgp~Lt~a~re 298 (450)
T 3txv_A 232 VEFGN-ENVIAYDRARAEKLSATLGQLHGMVFEAHSTDYQ-TPDALRELVADGFAILKVGPGLTFALRE 298 (450)
T ss_dssp CEECS-SCEECCCTTTTSHHHHGGGTSTTCEEEESCCTTC-CHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred cccCC-CCCCCCCHHHHHHHHHHhccCCCEEEecCCCCCC-CHHHHHHHHHcCCcEEEEChHHHHHHHH
Confidence 1 111 111111124577777776 778 766 55 56 5899999999999999999999987654
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.38 Score=45.29 Aligned_cols=132 Identities=7% Similarity=-0.029 Sum_probs=90.0
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~i 140 (311)
..+-.|.+.|..+.+.+.+.++.+.+.|.+.+++-+- .+.+..++.++.+|+.+ ++
T Consensus 134 ~~vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g----------------------~~~~~~~e~v~avr~a~g~~~ 191 (371)
T 2ps2_A 134 TRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKIS----------------------GEPVTDAKRITAALANQQPDE 191 (371)
T ss_dssp SCEEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECC----------------------SCHHHHHHHHHHHTTTCCTTC
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecC----------------------CCHHHHHHHHHHHHHhcCCCC
Confidence 3455677766667788999999999999999998421 12344567888888865 56
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHH-HHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEA-MKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~-~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
|+.+-. |.- +..+++.++.+.+ .++|+ .+- .|
T Consensus 192 ~l~vDa--n~~------------------------~~~~~a~~~~~~l~~~~~i-~iE--~P------------------ 224 (371)
T 2ps2_A 192 FFIVDA--NGK------------------------LSVETALRLLRLLPHGLDF-ALE--AP------------------ 224 (371)
T ss_dssp EEEEEC--TTB------------------------CCHHHHHHHHHHSCTTCCC-EEE--CC------------------
T ss_pred EEEEEC--CCC------------------------cCHHHHHHHHHHHHhhcCC-cCc--CC------------------
Confidence 665532 210 1235555555555 55554 320 01
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
++ + .+.++++++.+++||+.+-.+.++++++++++.| +|.+.+-
T Consensus 225 --------------~~-~-~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (371)
T 2ps2_A 225 --------------CA-T-WRECISLRRKTDIPIIYDELATNEMSIVKILADDAAEGIDLK 269 (371)
T ss_dssp --------------BS-S-HHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEEE
T ss_pred --------------cC-C-HHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEec
Confidence 11 1 3568888888899999999999999999998766 7999884
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.29 Score=43.56 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE-----------EEeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV-----------LFTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I-----------~lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
.++.+.+.+.|+.|+.+.. +++..+.+ +..++..+ ++++|+ .+.+.+..+..-.+|.+.+..
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~--~~~i~~ir---~~v~~Pvig~~k~d~~~~~~~I~~~--~~~i~~~~~~Gad~V~l~~~~ 111 (232)
T 3igs_A 39 AAMALAAEQAGAVAVRIEG--IDNLRMTR---SLVSVPIIGIIKRDLDESPVRITPF--LDDVDALAQAGAAIIAVDGTA 111 (232)
T ss_dssp HHHHHHHHHTTCSEEEEES--HHHHHHHH---TTCCSCEEEECBCCCSSCCCCBSCS--HHHHHHHHHHTCSEEEEECCS
T ss_pred HHHHHHHHHCCCeEEEECC--HHHHHHHH---HhcCCCEEEEEeecCCCcceEeCcc--HHHHHHHHHcCCCEEEECccc
Confidence 4577788999999998853 23333322 33455544 234453 345555555555555443211
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 226 GVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
. ..|..+.++++++++. ++++ ...+++.++++++.+.|||.+.+
T Consensus 112 ----~--~~p~~l~~~i~~~~~~-g~~v--~~~v~t~eea~~a~~~Gad~Ig~ 155 (232)
T 3igs_A 112 ----R--QRPVAVEALLARIHHH-HLLT--MADCSSVDDGLACQRLGADIIGT 155 (232)
T ss_dssp ----S--CCSSCHHHHHHHHHHT-TCEE--EEECCSHHHHHHHHHTTCSEEEC
T ss_pred ----c--CCHHHHHHHHHHHHHC-CCEE--EEeCCCHHHHHHHHhCCCCEEEE
Confidence 1 1134567888888875 5554 44789999999999999998865
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.12 Score=46.68 Aligned_cols=168 Identities=10% Similarity=0.116 Sum_probs=88.7
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
+.+.++..+..+...+.|++.+=+- |. .+. .+++.-+..++++..-.-| |.-
T Consensus 39 ~~t~~~i~~lc~eA~~~~~~aVcV~-p~--------~v~------------------~a~~~L~~s~v~v~tVigF-P~G 90 (239)
T 3ngj_A 39 DATEEQIRKLCSEAAEYKFASVCVN-PT--------WVP------------------LCAELLKGTGVKVCTVIGF-PLG 90 (239)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEC-GG--------GHH------------------HHHHHHTTSSCEEEEEEST-TTC
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEC-HH--------HHH------------------HHHHHhCCCCCeEEEEecc-CCC
Confidence 4556777777788888899988873 22 111 2222112334444322211 111
Q ss_pred ccCHH---HHHHHHHHcCCcEEEec-CCC----------hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh--CC
Q 021527 153 KRGVD---NFMSTVRDIGIRGLVVP-DVP----------LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA--SE 216 (311)
Q Consensus 153 ~~g~~---~fi~~~~~aGadGviip-Dlp----------~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~--a~ 216 (311)
....+ .-++.+.+.|+|-|=+. ++. .+|...+++.|...-+++|+=... .+++.+.+.++. ..
T Consensus 91 ~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~-Lt~eei~~a~~ia~~a 169 (239)
T 3ngj_A 91 ATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCY-LTNEEKVEVCKRCVAA 169 (239)
T ss_dssp CSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGG-SCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCC-CCHHHHHHHHHHHHHH
Confidence 11112 23456788899987542 221 133455566664322333321111 223444444333 23
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHcCCc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGWGAD 274 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~GAD 274 (311)
|..|+=+++|.+.. +... +-++.+|+. .+++|-+.+||++.+++.+++++||+
T Consensus 170 GADfVKTSTGf~~g--gAt~---~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~ 224 (239)
T 3ngj_A 170 GAEYVKTSTGFGTH--GATP---EDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGAS 224 (239)
T ss_dssp TCSEEECCCSSSSC--CCCH---HHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEE
T ss_pred CcCEEECCCCCCCC--CCCH---HHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhccc
Confidence 66677666564311 1122 223333433 36899999999999999999999999
|
| >2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.54 Score=44.65 Aligned_cols=78 Identities=8% Similarity=-0.032 Sum_probs=48.8
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFM 160 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi 160 (311)
++++++.+ -++++++|.+|=. +.|+-.-++- -+.++.+++. +.+|++..-..++-.+ ...++
T Consensus 120 ~ivdal~~-~v~~vKvg~~lfe--a~G~~gi~~L-------------~~~v~~lr~~-g~~VflDlK~~DIgnT-va~ya 181 (353)
T 2ffc_A 120 YIINETKE-YALAYKMNFAFYL--PYGSLGVDVL-------------KNVFDYLHHL-NVPTILDIKMNDIGNT-VKHYR 181 (353)
T ss_dssp HHHHHHGG-GCSEEEEEGGGGS--TTTHHHHHHH-------------HHHHHHHHHH-TCCEEEEEEECCCHHH-HHHHH
T ss_pred HHHHHhcc-ccceeeccHHHHH--hcCHHHHHHH-------------HHHHHHHHHc-CCcEEEEEecCchHHH-HHHHH
Confidence 34455433 3799999999932 3475543221 2346666654 7899998765555333 34566
Q ss_pred HHHH-HcCCcEEEecCC
Q 021527 161 STVR-DIGIRGLVVPDV 176 (311)
Q Consensus 161 ~~~~-~aGadGviipDl 176 (311)
+.+. ..|+|.+.+.-.
T Consensus 182 ~a~~~~lgaD~vTVhp~ 198 (353)
T 2ffc_A 182 KFIFDYLRSDSCTANIY 198 (353)
T ss_dssp HHHHTTSCCSEEEECCT
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 6664 689999999744
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.37 Score=45.79 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=91.0
Q ss_pred cEEEEEeCCC----CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-
Q 021527 64 ALIPYITAGD----PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM- 138 (311)
Q Consensus 64 ~li~yi~~G~----P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~- 138 (311)
.+-.|-+.|+ .+.+.+.+.++.+.+.|.+.+++-+- ++ +++.-.+.++.+|+.+
T Consensus 150 ~v~~y~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g------~~---------------~~~~~~e~v~avr~a~g 208 (392)
T 1tzz_A 150 RVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIG------GA---------------PIEEDRMRIEAVLEEIG 208 (392)
T ss_dssp EEEEEEECCCC----CHHHHHHHHHHHHTTTCSEEEEECS------SS---------------CHHHHHHHHHHHHHHHT
T ss_pred CeeEEEeCCcccCCCCHHHHHHHHHHHHHcCCCEEEEcCC------CC---------------CHHHHHHHHHHHHHhcC
Confidence 4445766665 36788889999999999999998421 11 2233456777777653
Q ss_pred -CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 139 -SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 139 -~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
++++.+-. |. -+..+++.++.+.++++|+..+- .|
T Consensus 209 ~~~~l~vDa--n~------------------------~~~~~~a~~~~~~l~~~~i~~iE--qP---------------- 244 (392)
T 1tzz_A 209 KDAQLAVDA--NG------------------------RFNLETGIAYAKMLRDYPLFWYE--EV---------------- 244 (392)
T ss_dssp TTCEEEEEC--TT------------------------CCCHHHHHHHHHHHTTSCCSEEE--CC----------------
T ss_pred CCCeEEEEC--CC------------------------CCCHHHHHHHHHHHHHcCCCeec--CC----------------
Confidence 56766632 21 02335666677777777766431 11
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-----CcEEEEh
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-----ADGVIVG 279 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-----ADGvIVG 279 (311)
++++..+.++++++.+++||+.+-.+.++++++++++.| +|.+.+-
T Consensus 245 ----------------~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik 295 (392)
T 1tzz_A 245 ----------------GDPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFD 295 (392)
T ss_dssp ----------------SCTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred ----------------CChhhHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence 122224568889888899999999999999999999876 8998774
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.3 Score=43.35 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE-----------EEeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV-----------LFTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I-----------~lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
.++.+.+.+.|+.|+.+.. +++..+.+ +..++..+ ++++|+ .+.+.+..+..-.+|.+.+
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~--~~~i~~ir---~~v~~Pvig~~k~~~~~~~~~I~~~--~~~i~~~~~aGad~I~l~~-- 109 (229)
T 3q58_A 39 AAMAQAAASAGAVAVRIEG--IENLRTVR---PHLSVPIIGIIKRDLTGSPVRITPY--LQDVDALAQAGADIIAFDA-- 109 (229)
T ss_dssp HHHHHHHHHTTCSEEEEES--HHHHHHHG---GGCCSCEEEECBCCCSSCCCCBSCS--HHHHHHHHHHTCSEEEEEC--
T ss_pred HHHHHHHHHCCCcEEEECC--HHHHHHHH---HhcCCCEEEEEeecCCCCceEeCcc--HHHHHHHHHcCCCEEEECc--
Confidence 4567778999999998863 33333332 33355543 245553 3456566555555554432
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 226 GVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
+.. .-+..+.++++++++. +++++ -.+++.++++++.+.|||.+.+
T Consensus 110 --~~~--~~p~~l~~~i~~~~~~-g~~v~--~~v~t~eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 110 --SFR--SRPVDIDSLLTRIRLH-GLLAM--ADCSTVNEGISCHQKGIEFIGT 155 (229)
T ss_dssp --CSS--CCSSCHHHHHHHHHHT-TCEEE--EECSSHHHHHHHHHTTCSEEEC
T ss_pred --ccc--CChHHHHHHHHHHHHC-CCEEE--EecCCHHHHHHHHhCCCCEEEe
Confidence 111 1134567889988875 55554 4789999999999999999865
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.14 Score=47.40 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeCC
Q 021527 178 LEETESLQKEAMKNKIELVLFTTP 201 (311)
Q Consensus 178 ~ee~~~~~~~~~~~gi~~I~lisp 201 (311)
.+|..++.+.+++.|.+.+.+++|
T Consensus 95 t~~ai~la~~A~~~Gadavlv~~P 118 (307)
T 3s5o_A 95 TQATVEMTVSMAQVGADAAMVVTP 118 (307)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 345555555555566665555554
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.44 Score=44.12 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=75.0
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-CCC-hhhHHHHHHHHHHc-C--CCeEEEeCC----CChHHHH
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-DVP-LEETESLQKEAMKN-K--IELVLFTTP----TTPTDRM 208 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-Dlp-~ee~~~~~~~~~~~-g--i~~I~lisp----~t~~eri 208 (311)
++.||+.-.-.. ....+++..+.++|.-|++.. .+. .++..+..+.+++. + +..-+++.| ...++.+
T Consensus 14 ~~~Pii~apM~g----vs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~ 89 (328)
T 2gjl_A 14 VEHPIMQGGMQW----VGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYR 89 (328)
T ss_dssp CSSSEEECCCTT----TCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHH
T ss_pred CCCCEEECCCCC----CCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHH
Confidence 578987743321 123568889999999998853 444 56655555555542 2 222334542 2334566
Q ss_pred HHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 209 KAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 209 ~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
+.+.+..-.+ +....| .+ .++++++++. ++|++ ..+++++++..+.+.|+|++++
T Consensus 90 ~~~~~~g~d~--V~~~~g-------~p---~~~~~~l~~~-gi~vi--~~v~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 90 AAIIEAGIRV--VETAGN-------DP---GEHIAEFRRH-GVKVI--HKCTAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp HHHHHTTCCE--EEEEES-------CC---HHHHHHHHHT-TCEEE--EEESSHHHHHHHHHTTCSEEEE
T ss_pred HHHHhcCCCE--EEEcCC-------Cc---HHHHHHHHHc-CCCEE--eeCCCHHHHHHHHHcCCCEEEE
Confidence 6555533333 322111 22 3567778775 67776 4578999999999999999999
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.28 Score=47.33 Aligned_cols=144 Identities=9% Similarity=0.030 Sum_probs=96.0
Q ss_pred ccEEEEEeC-CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--C
Q 021527 63 VALIPYITA-GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--S 139 (311)
Q Consensus 63 ~~li~yi~~-G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~ 139 (311)
..+=.|.+. +..+.+.+.+.++.+.+.|.+.+.+-+... |. ||. ..++.-++.++.+|+.+ +
T Consensus 166 ~~v~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~g-p~-dg~-------------~~~~~die~v~avReavG~d 230 (412)
T 3stp_A 166 DRIPVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYG-PK-DGM-------------PGMRENLKRVEAVREVIGYD 230 (412)
T ss_dssp SSEEEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCC-GG-GHH-------------HHHHHHHHHHHHHHHHHCSS
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccC-cc-ccc-------------chHHHHHHHHHHHHHHcCCC
Confidence 345456653 345678999999999999999999964432 21 332 12344567888888763 5
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+|+.+-. |. -+..+++.++.+.+.++|+..+- .
T Consensus 231 ~~L~vDa--N~------------------------~~~~~~Ai~~~~~Le~~~i~~iE--e------------------- 263 (412)
T 3stp_A 231 NDLMLEC--YM------------------------GWNLDYAKRMLPKLAPYEPRWLE--E------------------- 263 (412)
T ss_dssp SEEEEEC--TT------------------------CSCHHHHHHHHHHHGGGCCSEEE--C-------------------
T ss_pred CeEEEEC--CC------------------------CCCHHHHHHHHHHHHhcCCCEEE--C-------------------
Confidence 6776643 21 11245666677777777766541 1
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhH
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSA 281 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSa 281 (311)
.++++..+.++++|+.+++||+.|-.+.++++++++++.| +|.+.+--.
T Consensus 264 -------------P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~ 313 (412)
T 3stp_A 264 -------------PVIADDVAGYAELNAMNIVPISGGEHEFSVIGCAELINRKAVSVLQYDTN 313 (412)
T ss_dssp -------------CSCTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred -------------CCCcccHHHHHHHHhCCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecChh
Confidence 1122223568889998999999999999999999999766 688866433
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.15 E-value=1.2 Score=38.41 Aligned_cols=111 Identities=13% Similarity=0.158 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE-----------EeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL-----------FTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~-----------lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
.+.++.+.++|++++.+. .++....+ .+..++..+- ++.+ +.++++...+..-.++.+.+.
T Consensus 26 ~~~a~~~~~~Ga~~i~~~--~~~~i~~i---~~~~~~pv~~~~~~~~~~~~~~i~~--~~~~i~~~~~~Gad~v~l~~~- 97 (223)
T 1y0e_A 26 SKMALAAYEGGAVGIRAN--TKEDILAI---KETVDLPVIGIVKRDYDHSDVFITA--TSKEVDELIESQCEVIALDAT- 97 (223)
T ss_dssp HHHHHHHHHHTCSEEEEE--SHHHHHHH---HHHCCSCEEEECBCCCTTCCCCBSC--SHHHHHHHHHHTCSEEEEECS-
T ss_pred HHHHHHHHHCCCeeeccC--CHHHHHHH---HHhcCCCEEeeeccCCCccccccCC--cHHHHHHHHhCCCCEEEEeee-
Confidence 456777888999998763 22333323 2334555431 1222 346666665554455544321
Q ss_pred CccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 226 GVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.....+..+.++++++|+.. +.++ +-++++++++.++.+.|+|.+.++..
T Consensus 98 ----~~~~p~~~~~~~i~~~~~~~~~~~v--~~~~~t~~e~~~~~~~G~d~i~~~~~ 148 (223)
T 1y0e_A 98 ----LQQRPKETLDELVSYIRTHAPNVEI--MADIATVEEAKNAARLGFDYIGTTLH 148 (223)
T ss_dssp ----CSCCSSSCHHHHHHHHHHHCTTSEE--EEECSSHHHHHHHHHTTCSEEECTTT
T ss_pred ----cccCcccCHHHHHHHHHHhCCCceE--EecCCCHHHHHHHHHcCCCEEEeCCC
Confidence 11111124568899998875 4555 45788999999999999999877643
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.43 Score=45.52 Aligned_cols=133 Identities=12% Similarity=0.041 Sum_probs=92.2
Q ss_pred EEEEEeC-C-CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CC
Q 021527 65 LIPYITA-G-DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SC 140 (311)
Q Consensus 65 li~yi~~-G-~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~i 140 (311)
+=.|.+. | ..+.+...+.++.+.+.|.+.+-+-+-. +.++-++.++.+|+.+ ++
T Consensus 139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~----------------------~~~~d~~~v~avR~a~g~d~ 196 (389)
T 3ozy_A 139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR----------------------APRKDAANLRAMRQRVGADV 196 (389)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------------CHHHHHHHHHHHHHHHCTTS
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC----------------------CHHHHHHHHHHHHHHcCCCc
Confidence 5557665 6 5667899999999999999999985211 2344466788888763 56
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
|+.+-. |. -+..+++.++.+.++++|+..+- .|
T Consensus 197 ~l~vDa--n~------------------------~~~~~~A~~~~~~l~~~~i~~iE--qP------------------- 229 (389)
T 3ozy_A 197 EILVDA--NQ------------------------SLGRHDALAMLRILDEAGCYWFE--EP------------------- 229 (389)
T ss_dssp EEEEEC--TT------------------------CCCHHHHHHHHHHHHHTTCSEEE--SC-------------------
T ss_pred eEEEEC--CC------------------------CcCHHHHHHHHHHHHhcCCCEEE--CC-------------------
Confidence 776642 31 11245666777777777776551 11
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHh-hcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIK-ESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk-~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
++++..+.+++++ +.+++||+.|-.+.++++++++++.| +|.+.+-
T Consensus 230 -------------~~~~d~~~~~~l~~~~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik 277 (389)
T 3ozy_A 230 -------------LSIDDIEGHRILRAQGTPVRIATGENLYTRNAFNDYIRNDAIDVLQAD 277 (389)
T ss_dssp -------------SCTTCHHHHHHHHTTCCSSEEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred -------------CCcccHHHHHHHHhcCCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 1112235688888 88899999999999999999998765 7888764
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.52 Score=44.06 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCcEEE---eeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 238 VQTLLREIKESSTKPVAV---GFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~v---GfGIst~e~v~~v~~~GADGvIVG 279 (311)
..+.++++|+.+++||++ |+|++ +++++.+.++|+|+++|.
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~-~~~a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMS-KASAGKLYEAGAAAVDIG 209 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCC-HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCC-HHHHHHHHHcCCCEEEEc
Confidence 567899999888999988 77775 899999999999999994
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=95.12 E-value=0.33 Score=45.87 Aligned_cols=134 Identities=4% Similarity=-0.008 Sum_probs=86.9
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCc
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCP 141 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iP 141 (311)
.+-.|.+.|..+.+.+.+.++.+.+.|.+.+++-+- .+ +++...+.++.+|+.+ ++|
T Consensus 134 ~v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g------~~---------------~~~~~~e~v~avr~a~g~~~~ 192 (378)
T 2qdd_A 134 PVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIG------GS---------------DPAQDIARIEAISAGLPDGHR 192 (378)
T ss_dssp CEEBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECC------SS---------------CHHHHHHHHHHHHHSCCTTCE
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHhhhheeecCC------CC---------------ChHHHHHHHHHHHHHhCCCCE
Confidence 444576666667788899999999999999998421 11 2334467888888765 566
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+.+-. |.- +..+++.++.+.+. +|+ .+
T Consensus 193 l~vDa--n~~------------------------~~~~~a~~~~~~l~-~~i-~i------------------------- 219 (378)
T 2qdd_A 193 VTFDV--NRA------------------------WTPAIAVEVLNSVR-ARD-WI------------------------- 219 (378)
T ss_dssp EEEEC--TTC------------------------CCHHHHHHHHTSCC-CCC-EE-------------------------
T ss_pred EEEeC--CCC------------------------CCHHHHHHHHHHhC-CCc-EE-------------------------
Confidence 65532 210 12244444444443 343 21
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHh
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAM 282 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSai 282 (311)
. ..++ + .+.++++++.+++||+.+--+.++++++++++.| +|++.+.-.-
T Consensus 220 E---------qP~~-d-~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 270 (378)
T 2qdd_A 220 E---------QPCQ-T-LDQCAHVARRVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNR 270 (378)
T ss_dssp E---------CCSS-S-HHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred E---------cCCC-C-HHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccc
Confidence 1 0112 2 3568888888899999999999999999998655 7999885443
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.41 Score=44.95 Aligned_cols=136 Identities=14% Similarity=0.115 Sum_probs=87.2
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPI 142 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPi 142 (311)
+-.|.+.|..+.+.+.+.++.+.+.|.+.+.+-+- .+ +.+.-.+.++.+|+.+ ++++
T Consensus 130 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g------~~---------------~~~~d~~~v~avr~a~g~~~~l 188 (366)
T 1tkk_A 130 LETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVG------KD---------------DIATDIARIQEIRKRVGSAVKL 188 (366)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHHTCCEEEEECC------SS---------------CHHHHHHHHHHHHHHHCSSSEE
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCCCeEEEEeC------CC---------------CHHHHHHHHHHHHHHhCCCCeE
Confidence 43455555556678888888888999999998421 10 2334456777777653 5666
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHH--cCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK--NKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~--~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
.+-. |.- +..+++.++.+.+.+ +|+..+- .
T Consensus 189 ~vDa--n~~------------------------~~~~~a~~~~~~l~~~~~~i~~iE--q-------------------- 220 (366)
T 1tkk_A 189 RLDA--NQG------------------------WRPKEAVTAIRKMEDAGLGIELVE--Q-------------------- 220 (366)
T ss_dssp EEEC--TTC------------------------SCHHHHHHHHHHHHHTTCCEEEEE--C--------------------
T ss_pred EEEC--CCC------------------------CCHHHHHHHHHHHhhcCCCceEEE--C--------------------
Confidence 5542 311 123556666666666 5544320 1
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhH
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSA 281 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSa 281 (311)
.++++..+.++++++.+++||+.|-.+.++++++++++.| +|++.+--.
T Consensus 221 ------------P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 270 (366)
T 1tkk_A 221 ------------PVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLM 270 (366)
T ss_dssp ------------CSCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred ------------CCCcccHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehh
Confidence 1122223567888888899999999999999999988655 799988433
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.21 Score=45.88 Aligned_cols=113 Identities=14% Similarity=0.198 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHcCCcEEEec-------CCChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHh-CCceEEEEe
Q 021527 155 GVDNFMSTVRDIGIRGLVVP-------DVPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEA-SEGFVYLVS 223 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviip-------Dlp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~-a~gfiY~vs 223 (311)
+.++.++.+.+.|+||+++. -|..||..++.+.+.+. .+.++.-+..+++.+-++..... ..|...++.
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv 101 (292)
T 2vc6_A 22 ALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLI 101 (292)
T ss_dssp HHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 34667777778888887763 46667766655554432 35555555554544433221111 123332221
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEE-------eeCCCCHHHHHHHHH
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAV-------GFGISKPEHVQQVAG 270 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v-------GfGIst~e~v~~v~~ 270 (311)
.....- + ....++.++.++|.+.+++||++ |..+ ++|.+.++.+
T Consensus 102 ~~P~y~-~-~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l-~~~~~~~La~ 152 (292)
T 2vc6_A 102 VSPYYN-K-PTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEI-HVETLARIFE 152 (292)
T ss_dssp ECCCSS-C-CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCC-CHHHHHHHHH
T ss_pred cCCCCC-C-CCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCC-CHHHHHHHHh
Confidence 111111 1 12345666677777777788766 4445 4777777765
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.45 Score=44.75 Aligned_cols=136 Identities=12% Similarity=0.067 Sum_probs=88.4
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHH-CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CC
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDS-CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SC 140 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~-~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~i 140 (311)
.+-.|.+.|.-+.+...+.++.+.+ .|.+.+++-+-. + +++.-++.++.+|+.+ ++
T Consensus 131 ~v~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~iKik~g~------~---------------~~~~~~e~v~avr~a~g~~~ 189 (370)
T 1nu5_A 131 SIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGA------R---------------TPAQDLEHIRSIVKAVGDRA 189 (370)
T ss_dssp EEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSS------S---------------CHHHHHHHHHHHHHHHGGGC
T ss_pred ceEeeEEecCCCHHHHHHHHHHHHHhCCccEEEEecCC------C---------------ChHHHHHHHHHHHHhcCCCC
Confidence 3444544443345778888888888 999999984211 1 1233356777777653 46
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
++.+-. |. | ...+++.++.+.+.++|+..+- .|
T Consensus 190 ~l~vDa--n~----------------~--------~~~~~a~~~~~~l~~~~i~~iE--qP------------------- 222 (370)
T 1nu5_A 190 SVRVDV--NQ----------------G--------WDEQTASIWIPRLEEAGVELVE--QP------------------- 222 (370)
T ss_dssp EEEEEC--TT----------------C--------CCHHHHHHHHHHHHHHTCCEEE--CC-------------------
T ss_pred EEEEEC--CC----------------C--------CCHHHHHHHHHHHHhcCcceEe--CC-------------------
Confidence 655532 31 0 1346666777777777776431 11
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhh
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGS 280 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGS 280 (311)
++++..+.++++++.+++||+.|-.+.++++++++++.| +|.+.+--
T Consensus 223 -------------~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 270 (370)
T 1nu5_A 223 -------------VPRANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFSLKL 270 (370)
T ss_dssp -------------SCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECH
T ss_pred -------------CCcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEch
Confidence 122223567888888899999999999999999998776 79988843
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.31 Score=44.67 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCcEEEec-------CCChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHhC--CceEEEEe
Q 021527 156 VDNFMSTVRDIGIRGLVVP-------DVPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEAS--EGFVYLVS 223 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip-------Dlp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~a--~gfiY~vs 223 (311)
.++.++.+.+.|+||+++. -|..||..++.+.+.+. .+.+|.-+..+++.+-++. ++.+ .|...++.
T Consensus 24 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~l-a~~a~~~Gadavlv 102 (292)
T 2ojp_A 24 LKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISL-TQRFNDSGIVGCLT 102 (292)
T ss_dssp HHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHH-HHHTTTSSCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHH-HHHHHhcCCCEEEE
Confidence 4567777777888887763 46667766655554432 2455555555555444433 2322 24433322
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEE-------eeCCCCHHHHHHHHHc
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAV-------GFGISKPEHVQQVAGW 271 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v-------GfGIst~e~v~~v~~~ 271 (311)
.....- + ....++.++.++|.+.+++||++ |..+ ++|.+.++.+.
T Consensus 103 ~~P~y~-~-~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l-~~~~~~~La~~ 154 (292)
T 2ojp_A 103 VTPYYN-R-PSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDL-LPETVGRLAKV 154 (292)
T ss_dssp ECCCSS-C-CCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCC-CHHHHHHHHTS
T ss_pred CCCCCC-C-CCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCC-CHHHHHHHHcC
Confidence 112111 1 12345667777777777788766 3344 47878777654
|
| >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.25 Score=41.43 Aligned_cols=43 Identities=19% Similarity=0.406 Sum_probs=31.8
Q ss_pred hHHHHHHHHhhc-C-CCcEEEeeCCCCHHHHHHHHHcCCcEEEE-hh
Q 021527 237 HVQTLLREIKES-S-TKPVAVGFGISKPEHVQQVAGWGADGVIV-GS 280 (311)
Q Consensus 237 ~~~~~l~~vk~~-~-~~Pv~vGfGIst~e~v~~v~~~GADGvIV-GS 280 (311)
.+.++++.+|+. . +++|++|+-+- .++...+.+.|+|+++. |+
T Consensus 85 ~~~~~i~~L~~~g~~~i~v~vGG~~~-~~~~~~l~~~G~d~v~~~~~ 130 (161)
T 2yxb_A 85 LMKRLMAKLRELGADDIPVVLGGTIP-IPDLEPLRSLGIREIFLPGT 130 (161)
T ss_dssp HHHHHHHHHHHTTCTTSCEEEEECCC-HHHHHHHHHTTCCEEECTTC
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCc-hhcHHHHHHCCCcEEECCCC
Confidence 345677778775 2 68999998775 56777788899998764 44
|
| >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 | Back alignment and structure |
|---|
Probab=95.01 E-value=1.8 Score=41.92 Aligned_cols=193 Identities=10% Similarity=0.038 Sum_probs=116.4
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc---EEEEecCc
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP---IALFTYYN 149 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP---iilm~Y~n 149 (311)
-.+++.+.-++++.++.+..+|----+-.-. .+|.. .|.+.+.+..+++.+.++.++| |+|-.
T Consensus 21 ~~n~e~i~Ail~aAee~~sPVIi~~s~~~v~-~~gGY----------~g~~~~~~~~~v~~~A~~~~vP~~~VaLHl--- 86 (420)
T 2fiq_A 21 SAHPLVIEAALAFDRNSTRKVLIEATSNQVN-QFGGY----------TGMTPADFREFVFAIADKVGFARERIILGG--- 86 (420)
T ss_dssp CCCHHHHHHHHHHTTTSCCCEEEEEETTTBS-TTCTT----------TTBCHHHHHHHHHHHHHHHTCCGGGEEEEE---
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcChhhhh-hccCC----------CCCCHHHHHHHHHHHHHHcCcCcceEEEEC---
Confidence 4566888888888888888775443221100 01111 1344677788888888888899 77753
Q ss_pred chhccCHH---------------HHHHHHHHcCCcEEEec--C------CChhh------HHHHHHHHHHc----C---C
Q 021527 150 PILKRGVD---------------NFMSTVRDIGIRGLVVP--D------VPLEE------TESLQKEAMKN----K---I 193 (311)
Q Consensus 150 ~i~~~g~~---------------~fi~~~~~aGadGviip--D------lp~ee------~~~~~~~~~~~----g---i 193 (311)
-+.+.. +.+..+.++|.+.|.+= - +|+++ ..++.+.+.++ + +
T Consensus 87 --DHg~~~~w~~~~~~~am~~a~e~i~~aI~aGFtSVMiD~S~~~~~~~~pl~eNi~~~rt~elv~~Ah~~~~~~~eaEl 164 (420)
T 2fiq_A 87 --DHLGPNCWQQENVDAAMEKSVELVKAYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQL 164 (420)
T ss_dssp --EEESSGGGTTSBHHHHHHHHHHHHHHHHHTTCCEEEECCCSCCBTCCSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_pred --CCCCCccccccchhhhhhhHHHHHHHHHHhCCCEEEECCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHcccCCcccc
Confidence 122222 67888999999999882 2 55654 24566777765 0 1
Q ss_pred CeEEE---------------eCCCChHHHHHHHHH------hCCc-------eEEEE----ecCCccCCCCCCCchHHHH
Q 021527 194 ELVLF---------------TTPTTPTDRMKAIVE------ASEG-------FVYLV----SSIGVTGARASISGHVQTL 241 (311)
Q Consensus 194 ~~I~l---------------isp~t~~eri~~i~~------~a~g-------fiY~v----s~~G~TG~~~~~~~~~~~~ 241 (311)
..+.. ...|+| +..++..+ ...| .+.++ +..|.++ ...++. +.
T Consensus 165 G~vgG~Ev~v~~~~~~~~~~~~~T~P-eeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y~-~~~ld~---e~ 239 (420)
T 2fiq_A 165 SYVIGTEVPVPGGEASAIQSVHITHV-EDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSN-IIHYQP---QE 239 (420)
T ss_dssp EEEEECSSCC----------CCCCCH-HHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSSC-EECCCG---GG
T ss_pred eEEeeeecCCCCCcccccCCCCCCCH-HHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCCC-CCCcCH---HH
Confidence 11111 113444 44444444 0222 33353 2333332 223333 46
Q ss_pred HHHHhhcCCCc-EEE----eeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 242 LREIKESSTKP-VAV----GFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 242 l~~vk~~~~~P-v~v----GfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+++|++.+++| ++. |.|+. .++++++.+.|.--+=|||.+.....
T Consensus 240 l~~I~~~v~~P~LVle~HGgSg~~-~e~l~~~v~~Gi~kiNV~t~l~~a~~ 289 (420)
T 2fiq_A 240 AQALAQWIENTRMVYEAHSTDYQT-RTAYWELVRDHFAILKVGPALTFALR 289 (420)
T ss_dssp GHHHHHHHTTSSCEEEESCCTTCC-HHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEecCCCCCCC-HHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 78888888889 776 56665 79999999999888889999977643
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.52 Score=43.84 Aligned_cols=121 Identities=21% Similarity=0.247 Sum_probs=75.1
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcC-CCe-EEE-e-CCCChHHHHHHHH
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNK-IEL-VLF-T-TPTTPTDRMKAIV 212 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~g-i~~-I~l-i-sp~t~~eri~~i~ 212 (311)
++.||+.-.... ....+++..+.++|.-|++.. .++.++..+..+.+++.- ... +-+ + .|. .++.++.+.
T Consensus 25 ~~~Pii~apM~g----vs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~-~~~~~~~~~ 99 (326)
T 3bo9_A 25 IEHPILMGGMAW----AGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILVSPW-ADDLVKVCI 99 (326)
T ss_dssp CSSSEEECCCTT----TSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTCSSCEEEEEETTSTT-HHHHHHHHH
T ss_pred CCCCEEECCCCC----CCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEEeccCCC-HHHHHHHHH
Confidence 578988744321 123578899999999999865 456677666666666532 111 222 2 232 345555554
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
+..-.+| ....| .+ .++++++++. ++|+++ +++++++++.+.+.|+|++++
T Consensus 100 ~~g~d~V--~l~~g-------~p---~~~~~~l~~~-g~~v~~--~v~s~~~a~~a~~~GaD~i~v 150 (326)
T 3bo9_A 100 EEKVPVV--TFGAG-------NP---TKYIRELKEN-GTKVIP--VVASDSLARMVERAGADAVIA 150 (326)
T ss_dssp HTTCSEE--EEESS-------CC---HHHHHHHHHT-TCEEEE--EESSHHHHHHHHHTTCSCEEE
T ss_pred HCCCCEE--EECCC-------Cc---HHHHHHHHHc-CCcEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 5333333 22111 23 3567777764 667665 678999999999999999999
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.026 Score=54.04 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCcEEE---eeCCCCHHHHHHHHHcCCcEEEE
Q 021527 238 VQTLLREIKESSTKPVAV---GFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~v---GfGIst~e~v~~v~~~GADGvIV 278 (311)
..+.|+++++.+++||++ |+|+ ++++++.+.++|+|+++|
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~-s~~~A~~l~~aGad~I~V 217 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGI-SMETAKLLYSYGIKNFDT 217 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCC-CHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCC-CHHHHHHHHhCCCCEEEE
Confidence 567899999999999999 8888 499999999999999999
|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.93 E-value=1.4 Score=39.78 Aligned_cols=172 Identities=15% Similarity=0.194 Sum_probs=92.5
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCc--
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYN-- 149 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n-- 149 (311)
.++.+...+.++.+.+.|+|++|+=+=|-+...| .+.+.+.+..+|+.. ++|+++ ++-.
T Consensus 28 ~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~-----------------~~~v~~~l~~lr~~~~~~PiI~-T~Rt~~ 89 (257)
T 2yr1_A 28 GEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDD-----------------QERVLATANGLRNIAGEIPILF-TIRSER 89 (257)
T ss_dssp CSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTTC-----------------HHHHHHHHHHHHHHSSSCCEEE-ECCCTT
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEeecccccCc-----------------HHHHHHHHHHHHHhccCCCEEE-EEeecc
Confidence 4888998899999889999999996444222212 234456777777766 789866 3321
Q ss_pred --chh-ccCHH---HHHHHHHHcC-CcEEEecCCChh-hHHHHHHHHHHcCCCeEEEe-----CCCChHHHHHHHHHh-C
Q 021527 150 --PIL-KRGVD---NFMSTVRDIG-IRGLVVPDVPLE-ETESLQKEAMKNKIELVLFT-----TPTTPTDRMKAIVEA-S 215 (311)
Q Consensus 150 --~i~-~~g~~---~fi~~~~~aG-adGviipDlp~e-e~~~~~~~~~~~gi~~I~li-----sp~t~~eri~~i~~~-a 215 (311)
..+ ....+ +.++.+.+.| +|-+ -.++-.. ...++.+.+++.|.++|.-. +|. .++....+.+. .
T Consensus 90 eGG~~~~~~~~~~~~ll~~~~~~g~~d~i-DvEl~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tP~-~~el~~~~~~~~~ 167 (257)
T 2yr1_A 90 EGGQPIPLNEAEVRRLIEAICRSGAIDLV-DYELAYGERIADVRRMTEECSVWLVVSRHYFDGTPR-KETLLADMRQAER 167 (257)
T ss_dssp TTCCCCSSCHHHHHHHHHHHHHHTCCSEE-EEEGGGTTHHHHHHHHHHHTTCEEEEEEEESSCCCC-HHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCCCEE-EEECCCChhHHHHHHHHHhCCCEEEEEecCCCCCcC-HHHHHHHHHHHHh
Confidence 112 22223 3555667777 7754 3333222 34456667778887766432 232 13333222222 2
Q ss_pred Cc-eEEEEecCCccCCCCCCCchHHHHH---HHHhhcCCCcEEEeeCCCCHHHHHHHHHc
Q 021527 216 EG-FVYLVSSIGVTGARASISGHVQTLL---REIKESSTKPVAVGFGISKPEHVQQVAGW 271 (311)
Q Consensus 216 ~g-fiY~vs~~G~TG~~~~~~~~~~~~l---~~vk~~~~~Pv~vGfGIst~e~v~~v~~~ 271 (311)
.| .++-+..+.. ...++..++ .++++..+.|+ ++++-...-.+.+++..
T Consensus 168 ~gaDivKia~~a~------s~~D~l~ll~~~~~~~~~~~~P~-I~~~MG~~G~~SRi~~~ 220 (257)
T 2yr1_A 168 YGADIAKVAVMPK------SPEDVLVLLQATEEARRELAIPL-ITMAMGGLGAITRLAGW 220 (257)
T ss_dssp TTCSEEEEEECCS------SHHHHHHHHHHHHHHHHHCSSCE-EEEECTTTTHHHHHHGG
T ss_pred cCCCEEEEEeccC------CHHHHHHHHHHHHHHhccCCCCE-EEEECCCCcchHHHHHH
Confidence 34 3333443321 123344444 34434457896 34433333567777754
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.28 Score=45.50 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=14.7
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEeCCC
Q 021527 177 PLEETESLQKEAMKNKIELVLFTTPT 202 (311)
Q Consensus 177 p~ee~~~~~~~~~~~gi~~I~lisp~ 202 (311)
..+|..++.+.+++.|.+.+.+++|.
T Consensus 88 ~t~~ai~la~~A~~~Gadavlv~~Py 113 (309)
T 3fkr_A 88 STQVCAARSLRAQQLGAAMVMAMPPY 113 (309)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34555555556666666666555553
|
| >1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=2.1 Score=40.13 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCC-C--CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVP-Y--SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~P-f--sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
+...+.++.+.+.|+..|-| |+| - .|+.. ||++.+ .++.||+++.- +++++
T Consensus 66 d~l~~~~~~~~~lGi~~v~LFgv~~~~~KD~~gs~A~~~~g~v~r------------------air~iK~~~pd-l~vit 126 (337)
T 1w5q_A 66 DQLLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQR------------------ATRALRERFPE-LGIIT 126 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCGGGCBSSCGGGGCTTSHHHH------------------HHHHHHHHCTT-SEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCcccCCcccCccCCCCChHHH------------------HHHHHHHHCCC-eEEEE
Confidence 57999999999999998876 773 3 33333 454433 45556655311 44442
Q ss_pred ------cCc----chhc-cC-H------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC-----
Q 021527 147 ------YYN----PILK-RG-V------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT----- 200 (311)
Q Consensus 147 ------Y~n----~i~~-~g-~------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis----- 200 (311)
|.. .+.. .| + +...+. .+++|+|-|--.|+=.......++.+.++|...+...+
T Consensus 127 DvcLc~YT~HGHcGil~~~g~V~ND~Tl~~L~k~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKy 206 (337)
T 1w5q_A 127 DVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKY 206 (337)
T ss_dssp EECSTTTBTTCCSSCBCTTSCBCHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEB
T ss_pred eeecccCCCCCcceeeCCCCcCccHHHHHHHHHHHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCceeehhHHHH
Confidence 211 1222 23 1 223332 36799999876788777788899999999997555322
Q ss_pred ---------------CCC--------------hHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC
Q 021527 201 ---------------PTT--------------PTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST 250 (311)
Q Consensus 201 ---------------p~t--------------~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~ 250 (311)
|.. ..|-+++... ..+|...++=.- .+ ...+.|+++|+.++
T Consensus 207 ASafYGPFRdAa~Sap~f~~GDrktYQmdpaN~~EAlrE~~~Di~EGAD~vMVKP-------al--~YLDIir~vk~~~~ 277 (337)
T 1w5q_A 207 ASAYYGPFRDAVGSASNLGKGNRATYQMDPANSDEALHEVAADLAEGADMVMVKP-------GM--PYLDIVRRVKDEFR 277 (337)
T ss_dssp CCGGGHHHHHC----------CGGGTSBCTTCSHHHHHHHHHHHHTTCSEEEEES-------CG--GGHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcccCCCCccccCCCCCChHHHHHHHHhhHHhCCCEEEEcC-------CC--chHHHHHHHHHhcC
Confidence 322 2344444432 356665553111 11 24688999999999
Q ss_pred CcEEE---------------eeCCC---CHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 251 KPVAV---------------GFGIS---KPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 251 ~Pv~v---------------GfGIs---t~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+|+++ .+=|. --|.+..++++|||++| |.+.+
T Consensus 278 ~PvaaYqVSGEYAMikaAa~~GwiD~~~v~Esl~~~kRAGAd~Ii--TYfA~ 327 (337)
T 1w5q_A 278 APTFVYQVSGEYAMHMGAIQNGWLAESVILESLTAFKRAGADGIL--TYFAK 327 (337)
T ss_dssp SCEEEEECHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHTCSEEE--ETTHH
T ss_pred CCEEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCEEe--eecHH
Confidence 99965 11122 13556677789999886 44444
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.11 Score=47.78 Aligned_cols=115 Identities=9% Similarity=-0.048 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCC-CCEEEEcCCC-----CCCCCChHHHHHHHHHHHHcCCC
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCG-SDIIELGVPY-----SDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~G-aD~IElG~Pf-----sDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
+.+.++.+++.-...++.-+.++ .+.+.+.++++.+.++| +|.|.+-.-. -|+....|.+..+ ....|.+
T Consensus 148 ~~~ii~~vr~~~~~Pv~vK~~~~-~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~---~~~gG~s 223 (314)
T 2e6f_A 148 MRTYLQQVSLAYGLPFGVKMPPY-FDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPK---QGFGGLG 223 (314)
T ss_dssp HHHHHHHHHHHHCSCEEEEECCC-CCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGG---GGEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCC-CCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccC---cCCCccC
Confidence 45566666554234566556554 36678889999999999 9999874311 1111111100000 0001111
Q ss_pred ----HHHHHHHHHHhhccC-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 124 ----FNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 124 ----~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
....++.++++++.+ ++||+..+-.+ . .+.+.++..+|+|+|.+.
T Consensus 224 g~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~-----~-~~da~~~l~~GAd~V~ig 273 (314)
T 2e6f_A 224 GKYILPTALANVNAFYRRCPDKLVFGCGGVY-----S-GEDAFLHILAGASMVQVG 273 (314)
T ss_dssp SGGGHHHHHHHHHHHHHHCTTSEEEEESSCC-----S-HHHHHHHHHHTCSSEEEC
T ss_pred cccccHHHHHHHHHHHHhcCCCCEEEECCCC-----C-HHHHHHHHHcCCCEEEEc
Confidence 012256888888887 99999876322 1 234444557899999884
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.35 Score=45.90 Aligned_cols=135 Identities=12% Similarity=0.085 Sum_probs=85.6
Q ss_pred ccEEEEEeCCC--CCh---hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc
Q 021527 63 VALIPYITAGD--PDL---STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ 137 (311)
Q Consensus 63 ~~li~yi~~G~--P~~---~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~ 137 (311)
..+-.|-..|. .+. +.+.+.++.+.+.|.+.+++-+ .++ +++...+.++.+|+.
T Consensus 122 ~~vp~~~~~g~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~------g~~---------------~~~~d~e~v~avR~a 180 (382)
T 2gdq_A 122 EEIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKI------GGT---------------SFKEDVRHINALQHT 180 (382)
T ss_dssp SEEEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEEC------SSS---------------CHHHHHHHHHHHHHH
T ss_pred CceeEEEEecccCCCcccHHHHHHHHHHHHHcCCCEEEEcC------CCC---------------CHHHHHHHHHHHHHh
Confidence 34445644332 455 7888889999999999999842 111 233445677777765
Q ss_pred C--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHh
Q 021527 138 M--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 138 ~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~ 214 (311)
+ ++++.+-. |. -+..+++.++.+.+.++ |+.
T Consensus 181 ~G~d~~l~vDa--n~------------------------~~~~~~a~~~~~~l~~~~~i~-------------------- 214 (382)
T 2gdq_A 181 AGSSITMILDA--NQ------------------------SYDAAAAFKWERYFSEWTNIG-------------------- 214 (382)
T ss_dssp HCTTSEEEEEC--TT------------------------CCCHHHHHTTHHHHTTCSCEE--------------------
T ss_pred hCCCCEEEEEC--CC------------------------CCCHHHHHHHHHHHhhccCCe--------------------
Confidence 3 56766632 21 01234555555555555 433
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEE
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIV 278 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIV 278 (311)
|+.. .++++..+.++++++.+++||+.|-.+.++++++++++.| +|.+.+
T Consensus 215 -----~iEq---------P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 265 (382)
T 2gdq_A 215 -----WLEE---------PLPFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQP 265 (382)
T ss_dssp -----EEEC---------CSCSSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred -----EEEC---------CCCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 2210 1122224568889998999999999999999999999766 788866
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.074 Score=45.82 Aligned_cols=111 Identities=15% Similarity=0.238 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+..+.+++.|.+.++..+.+. +..+.++.+.+.|+|+|-+. |-.+|.. .+.+ .++
T Consensus 92 ~~~~~~~~~~~g~~~~v~~~~~~-----t~~~~~~~~~~~g~d~i~v~-----~g~~g~~----------~~~~---~~~ 148 (211)
T 3f4w_A 92 IQSCIRAAKEAGKQVVVDMICVD-----DLPARVRLLEEAGADMLAVH-----TGTDQQA----------AGRK---PID 148 (211)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCS-----SHHHHHHHHHHHTCCEEEEE-----CCHHHHH----------TTCC---SHH
T ss_pred HHHHHHHHHHcCCeEEEEecCCC-----CHHHHHHHHHHcCCCEEEEc-----CCCcccc----------cCCC---CHH
Confidence 45555555555654433223222 33577778888889987663 2222311 1111 135
Q ss_pred HHHHhhccC-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC------CChhhHHHHHHHHHH
Q 021527 130 MLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD------VPLEETESLQKEAMK 190 (311)
Q Consensus 130 ~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD------lp~ee~~~~~~~~~~ 190 (311)
.++++++.. ++|+++-+=.| .+-++.+.++|+|++++.- =|.+...++++.+++
T Consensus 149 ~i~~l~~~~~~~~i~~~gGI~-------~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~~ 209 (211)
T 3f4w_A 149 DLITMLKVRRKARIAVAGGIS-------SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQ 209 (211)
T ss_dssp HHHHHHHHCSSCEEEEESSCC-------TTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEECCCC-------HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHhh
Confidence 677777664 78988865333 1346677889999999952 122334555555544
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.75 Score=44.17 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=94.7
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE-cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--C
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL-GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--S 139 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl-G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~ 139 (311)
..+-.|.+.|..+.+...+.++.+.+.|.+.+=+ |.|-.+...... ++++-++.++.+|+.+ +
T Consensus 113 ~~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl~G~~~~~~~~~~~--------------~~~~d~e~v~avR~avG~d 178 (405)
T 3rr1_A 113 DKMRTYSWVGGDRPADVIAGMKALQAGGFDHFKLNGCEEMGIIDTSR--------------AVDAAVARVAEIRSAFGNT 178 (405)
T ss_dssp SCEEEEEECCCSSHHHHHHHHHHHHHTTCCEEEEESCCSSSCBCSHH--------------HHHHHHHHHHHHHHTTGGG
T ss_pred CceeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcccccccch--------------hHHHHHHHHHHHHHHhCCC
Confidence 4566788888878899999999999999999887 322211111111 1233456788888765 5
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+++.+- .|. -+..+++.++.+.+.++|+..+- .|
T Consensus 179 ~~L~vD--aN~------------------------~~~~~~A~~~~~~L~~~~i~~iE--eP------------------ 212 (405)
T 3rr1_A 179 VEFGLD--FHG------------------------RVSAPMAKVLIKELEPYRPLFIE--EP------------------ 212 (405)
T ss_dssp SEEEEE--CCS------------------------CBCHHHHHHHHHHHGGGCCSCEE--CS------------------
T ss_pred ceEEEE--CCC------------------------CCCHHHHHHHHHHHHhcCCCEEE--CC------------------
Confidence 666653 231 11245666677777777765441 11
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEE
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIV 278 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIV 278 (311)
++++..+.++++++.+++||+.|-.+.++++++++++.| +|.+.+
T Consensus 213 --------------~~~~d~~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~ 258 (405)
T 3rr1_A 213 --------------VLAEQAETYARLAAHTHLPIAAGERMFSRFDFKRVLEAGGVSILQP 258 (405)
T ss_dssp --------------SCCSSTHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCCCSEECC
T ss_pred --------------CCcccHHHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhCCCeEEE
Confidence 111112568888898999999999999999999998765 688866
|
| >3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.42 Score=43.68 Aligned_cols=122 Identities=19% Similarity=0.225 Sum_probs=75.7
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHH----HHHHHHcCCCeEEEeCCCChHHHH--------H-HHHHh-------
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESL----QKEAMKNKIELVLFTTPTTPTDRM--------K-AIVEA------- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~----~~~~~~~gi~~I~lisp~t~~eri--------~-~i~~~------- 214 (311)
-...+++.|++.+|+..- -+.|..++ ...+.++|+.+|+-+.- +-++|- . .+...
T Consensus 84 S~~mLkd~G~~~ViiGHSERR~~f~Etde~V~~Kv~~Al~~GL~pIlCvGE-tleeReag~t~~vv~~Ql~~~l~~l~~~ 162 (267)
T 3ta6_A 84 SGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGE-HLDVREAGNHVAHNIEQLRGSLAGLLAE 162 (267)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHTTCHHHHHHHHHHHHTTTCCHH
T ss_pred cHHHHHHcCCCEEEEcchhhccccCCCHHHHHHHHHHHHHCCCeEEEEeCC-CHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 456789999999999731 01222222 55678899998877764 444541 1 11111
Q ss_pred --CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEh
Q 021527 215 --SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQVAG-WGADGVIVG 279 (311)
Q Consensus 215 --a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVG 279 (311)
..-.|-|.+ ..| ||.. ..++...+..+.||+. -+++|+.|+.++ ++|+++++. -..||+.||
T Consensus 163 ~~~~vvIAYEPVWAIG-TG~t-Atpe~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~-~~N~~el~~~~diDG~LVG 239 (267)
T 3ta6_A 163 QIGSVVIAYEPVWAIG-TGRV-ASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVN-AKNVGDIVAQDDVDGGLVG 239 (267)
T ss_dssp HHTTCEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHSCHHHHTTSCEEECSCCC-TTTHHHHHTSTTCCEEEEC
T ss_pred HhCCEEEEECChhhhc-CCcC-CCHHHHHHHHHHHHHHHHHhhChhhhccceEEEcCCcC-HhHHHHHhcCCCCCEEEec
Confidence 122344433 333 6643 3345555655555553 148999999997 799998863 347999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
.|=.+
T Consensus 240 gASL~ 244 (267)
T 3ta6_A 240 GASLD 244 (267)
T ss_dssp GGGGS
T ss_pred hHhcC
Confidence 98776
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.52 Score=45.00 Aligned_cols=147 Identities=16% Similarity=0.053 Sum_probs=0.0
Q ss_pred CccEEEEEe-CC--CC-------ChhhHHHHHHHHHHCCCCEEEE--------cCCCCCCCCChHHHHHHHHHHHHcCC-
Q 021527 62 KVALIPYIT-AG--DP-------DLSTTAEALKLLDSCGSDIIEL--------GVPYSDPLADGPVIQAAATRSLARGT- 122 (311)
Q Consensus 62 ~~~li~yi~-~G--~P-------~~~~~~e~~~~L~~~GaD~IEl--------G~PfsDP~aDGp~Iq~a~~~Al~~G~- 122 (311)
+..+-.|-+ .+ .. +.+.+.+.++.+.+.|.+.+++ |.+|..|+..-+ ..|.
T Consensus 127 ~~~vp~y~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~----------~GG~~ 196 (410)
T 2gl5_A 127 NEKLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRN----------YSGLL 196 (410)
T ss_dssp CSSEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGG----------GGSCC
T ss_pred cCceeEeEecccCCccccccccCCHHHHHHHHHHHHHcCCCEEEEeccccCCccccccccccccc----------ccCcc
Q ss_pred ---CHHHHHHHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE
Q 021527 123 ---NFNAILSMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 123 ---~~~~~~~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~ 197 (311)
+++...+.++.+|+.+ ++++.+ .++ .-+..+++.++.+.+.++|+..+-
T Consensus 197 ~~~~~~~~~e~v~avR~a~G~d~~l~v----------------------Dan----~~~~~~~ai~~~~~l~~~~i~~iE 250 (410)
T 2gl5_A 197 LADQLKMGEARIAAMREAMGDDADIIV----------------------EIH----SLLGTNSAIQFAKAIEKYRIFLYE 250 (410)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSSSEEEE----------------------ECT----TCSCHHHHHHHHHHHGGGCEEEEE
T ss_pred chhHHHHHHHHHHHHHHhcCCCCEEEE----------------------ECC----CCCCHHHHHHHHHHHHhcCCCeEE
Q ss_pred EeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEE
Q 021527 198 FTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGV 276 (311)
Q Consensus 198 lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGv 276 (311)
..++++..+.++++|+.+++||+.+-.+.++++++++++.| +|.+
T Consensus 251 ----------------------------------~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v 296 (410)
T 2gl5_A 251 ----------------------------------EPIHPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVA 296 (410)
T ss_dssp ----------------------------------CSSCSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEE
T ss_pred ----------------------------------CCCChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEE
Q ss_pred EE
Q 021527 277 IV 278 (311)
Q Consensus 277 IV 278 (311)
.+
T Consensus 297 ~i 298 (410)
T 2gl5_A 297 QP 298 (410)
T ss_dssp CC
T ss_pred ec
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.23 Score=46.10 Aligned_cols=114 Identities=12% Similarity=0.198 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHcCCcEEEec-------CCChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHhC-Cce-EEEE
Q 021527 155 GVDNFMSTVRDIGIRGLVVP-------DVPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEAS-EGF-VYLV 222 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviip-------Dlp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~a-~gf-iY~v 222 (311)
+.++.++.+.+.|+||+++. -|..||..++.+.+.+. .+.++.-+..++..+-++...... .|. ..++
T Consensus 29 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davl 108 (311)
T 3h5d_A 29 AIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGL 108 (311)
T ss_dssp HHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEE
Confidence 44566666777777777663 35556666655555443 234444444444433332211111 121 2221
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE-------eeCCCCHHHHHHHHHc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAV-------GFGISKPEHVQQVAGW 271 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v-------GfGIst~e~v~~v~~~ 271 (311)
....... + ....++.++.++|.+.+++||++ |..++ ++.+.++.+.
T Consensus 109 v~~P~y~-~-~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~-~~~~~~La~~ 161 (311)
T 3h5d_A 109 AIVPYYN-K-PSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELT-PETMLRLADH 161 (311)
T ss_dssp EECCCSS-C-CCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCC-HHHHHHHHTS
T ss_pred EcCCCCC-C-CCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCC-HHHHHHHhcC
Confidence 1111111 1 11234556666666666777655 44453 6667666654
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.26 Score=45.99 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=8.1
Q ss_pred HHHHHHHHHcCCcEEEe
Q 021527 157 DNFMSTVRDIGIRGLVV 173 (311)
Q Consensus 157 ~~fi~~~~~aGadGvii 173 (311)
++.++.+.+.|+||+++
T Consensus 35 ~~lv~~li~~Gv~gl~v 51 (318)
T 3qfe_A 35 ERYYAYLARSGLTGLVI 51 (318)
T ss_dssp HHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 33444444555555444
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.24 Score=45.53 Aligned_cols=112 Identities=13% Similarity=0.218 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCcEEEe-------cCCChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHhC--CceEEEEe
Q 021527 156 VDNFMSTVRDIGIRGLVV-------PDVPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEAS--EGFVYLVS 223 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvii-------pDlp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~a--~gfiY~vs 223 (311)
.++.++.+.+.|+||+++ +-|..||..++.+.+.+. .+.+|.-+..++..+-++. ++.+ .|+..++.
T Consensus 25 l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~l-a~~a~~~Gadavlv 103 (292)
T 3daq_A 25 LKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQA-SIQAKALGADAIML 103 (292)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHH-HHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHH-HHHHHHcCCCEEEE
Confidence 345566666677777666 235556655544444332 2344444443333332221 1111 12222211
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEE-------eeCCCCHHHHHHHHHc
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAV-------GFGISKPEHVQQVAGW 271 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v-------GfGIst~e~v~~v~~~ 271 (311)
...... + .....+.++.++|.+.+++||++ |..++ ++.+.++.+.
T Consensus 104 ~~P~y~-~-~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~-~~~~~~La~~ 155 (292)
T 3daq_A 104 ITPYYN-K-TNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIE-PETVEILSQH 155 (292)
T ss_dssp ECCCSS-C-CCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCC-HHHHHHHHTS
T ss_pred CCCCCC-C-CCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCC-HHHHHHHhcC
Confidence 111111 0 11234555566665555666554 44453 5666666653
|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.57 Score=45.63 Aligned_cols=209 Identities=13% Similarity=0.088 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHcCC-ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc---CC-----CCCCCCChHHHHHHHHHHHH
Q 021527 49 GLAETFTRLKKQGK-VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG---VP-----YSDPLADGPVIQAAATRSLA 119 (311)
Q Consensus 49 ~i~~~f~~~~~~~~-~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG---~P-----fsDP~aDGp~Iq~a~~~Al~ 119 (311)
.-.+.|.++..+.. +.+ ..++|--|. -.++.++++|.+.|=+. +- .+..+-|+-
T Consensus 49 ~~a~~Lr~ll~~~~~~~~--~~~~Ga~d~----~sA~~~~~aGf~Aiy~SG~~vAa~~~~s~~G~PD~g----------- 111 (435)
T 3lg3_A 49 NGAKKLWELLHGGSRKGY--INCLGALTG----GQALQQAKAGVEAIYMSGWQVAADANTASSMYPDQS----------- 111 (435)
T ss_dssp HHHHHHHHHHTTTSSSSS--EEEEBCCSH----HHHHHHHHHTCCSEEECHHHHHHHCCTTCSCCCSSS-----------
T ss_pred HHHHHHHHHHHhhccCCc--EEeCCCCcH----HHHHHHHHcCCCEEEechHHHhcccchhccCCCCcC-----------
Confidence 45567776665521 122 334454432 33444577799999883 11 122233321
Q ss_pred cCCCHHHHHHHHHHhhcc--------------------C--CCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 120 RGTNFNAILSMLKEVVPQ--------------------M--SCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 120 ~G~~~~~~~~~i~~ir~~--------------------~--~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
-.+.+++++.+++|.+. + .+||++. ||-|+. .+.+.++.+.++|+.|+.+=
T Consensus 112 -l~~~~ev~~~v~rI~~a~~~~d~~~~~~~~~~~~~~~~d~~lPviaD~DtGyG~~~---~v~~tv~~~~~aGaaGi~IE 187 (435)
T 3lg3_A 112 -LYPVDSVPAVVKRINNSFRRADQIQWSNNIEPGSKGYTDYFLPIVADAEAGFGGVL---NAFELMKAMIEAGAAGVHFE 187 (435)
T ss_dssp -CSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCTTSTTCCCCCCCEEEECTTCSSSHH---HHHHHHHHHHHHTCSEEEEE
T ss_pred -cCcHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCCCCeEEECCCCCCCcH---HHHHHHHHHHHcCCEEEEEe
Confidence 13445555555555321 2 2999998 476654 24678889999999999997
Q ss_pred CC----------------ChhhHH-HHHHHH---HHcCCCeEEEe-CC--------------------------------
Q 021527 175 DV----------------PLEETE-SLQKEA---MKNKIELVLFT-TP-------------------------------- 201 (311)
Q Consensus 175 Dl----------------p~ee~~-~~~~~~---~~~gi~~I~li-sp-------------------------------- 201 (311)
|- |.+|.. +++... +..|.+.++.. +.
T Consensus 188 Dq~~~~KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~IiARTDa~aa~l~~s~~d~rD~~fi~G~r~~eG~y~~~ 267 (435)
T 3lg3_A 188 DQLAAVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPTLLIARTDADAADLLTSDCDPYDREFITGDRTAEGFFRTR 267 (435)
T ss_dssp SBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCGGGGGGEEEEECTTCCEEEC
T ss_pred cCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCCccccccccccccccchhhccccccccccccc
Confidence 73 344533 333322 22466655432 11
Q ss_pred CChH---HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC---------CHHH----H
Q 021527 202 TTPT---DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS---------KPEH----V 265 (311)
Q Consensus 202 ~t~~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs---------t~e~----v 265 (311)
...+ +|.+.+++ .-..||+.+ +. ....++.++.+.++......++++ |.+ +.++ .
T Consensus 268 ~gld~AI~Ra~AY~~-GAD~if~E~-----~~--~~~~ei~~f~~~v~~~~P~~~La~-~~sPsfnw~~~~~d~~~~~f~ 338 (435)
T 3lg3_A 268 AGIEQAISRGLAYAP-YADLVWCET-----ST--PDLALAKRFADAVHAQFPGKLLAY-NCSPSFNWKKNLTDQQIASFQ 338 (435)
T ss_dssp CSHHHHHHHHHHHGG-GCSEEEECC-----SS--CCHHHHHHHHHHHHHHSTTCEEEE-ECCSSSCHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc-cCCEEEecC-----CC--CCHHHHHHHHHHhccccCCeEEEe-CCCCCccccccCCHHHHHHHH
Confidence 1122 44444444 334456533 11 123446677777776444555443 332 1223 5
Q ss_pred HHHHHcCCcEEEEhhHhhchhh
Q 021527 266 QQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 266 ~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.++.++|..-++++.+..+...
T Consensus 339 ~eLa~lG~~~v~~~la~~raa~ 360 (435)
T 3lg3_A 339 DELSAMGYKYQFITLAGIHSMW 360 (435)
T ss_dssp HHHHHTTEEEEEETTHHHHHHH
T ss_pred HHHHHcCCcEEEeCcHHHHHHH
Confidence 7788899999999999988664
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.59 Score=44.60 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=91.0
Q ss_pred cEEEEEeC-CC--CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--
Q 021527 64 ALIPYITA-GD--PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-- 138 (311)
Q Consensus 64 ~li~yi~~-G~--P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-- 138 (311)
.+-.|.+. |. .+.+.+.+.++.+.+.|.+.+++-+ .+ -+++.-.+.++.+|+.+
T Consensus 161 ~vp~y~~~g~~~~~~~e~~~~~a~~~~~~Gf~~vKik~------g~---------------~~~~~d~e~v~avR~avG~ 219 (398)
T 2pp0_A 161 SVQCYNTSGGFLHTPLDQVLKNVVISRENGIGGIKLKV------GQ---------------PNCAEDIRRLTAVREALGD 219 (398)
T ss_dssp EEEEEECTTSCTTSCHHHHHHHHHHHHHTTCSCEEEEC------CC---------------SCHHHHHHHHHHHHHHHCS
T ss_pred CeeEEEecCCcCCCCHHHHHHHHHHHHHhCCCeEEEec------CC---------------CCHHHHHHHHHHHHHHcCC
Confidence 34456664 32 3778899999999999999999842 11 12334456777777753
Q ss_pred CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 139 SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
++++.+-. |. -+..+++.++.+.+.++|+..+- .|
T Consensus 220 d~~l~vDa--n~------------------------~~~~~~ai~~~~~l~~~~i~~iE--qP----------------- 254 (398)
T 2pp0_A 220 EFPLMVDA--NQ------------------------QWDRETAIRMGRKMEQFNLIWIE--EP----------------- 254 (398)
T ss_dssp SSCEEEEC--TT------------------------CSCHHHHHHHHHHHGGGTCSCEE--CC-----------------
T ss_pred CCeEEEEC--CC------------------------CCCHHHHHHHHHHHHHcCCceee--CC-----------------
Confidence 57776642 21 11346666777777777776431 11
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
++++..+.++++++.+++||+.+-.+.++++++++++.| +|.+.+-
T Consensus 255 ---------------~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 301 (398)
T 2pp0_A 255 ---------------LDAYDIEGHAQLAAALDTPIATGEMLTSFREHEQLILGNASDFVQPD 301 (398)
T ss_dssp ---------------SCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred ---------------CChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 111223567888888899999999999999999998776 7888764
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.67 Score=41.02 Aligned_cols=104 Identities=12% Similarity=0.206 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe-CCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT-TPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASIS 235 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li-sp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~ 235 (311)
.+.++.+.+.|++-+=+..-.....+.+++.++++. +..... +.- ..++.+...+..-.|+ + +|. .+
T Consensus 32 ~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~-~l~vgaGtvl-~~d~~~~A~~aGAd~v--~-----~p~---~d 99 (224)
T 1vhc_A 32 LPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRP-DFLIAAGTVL-TAEQVVLAKSSGADFV--V-----TPG---LN 99 (224)
T ss_dssp HHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCT-TCEEEEESCC-SHHHHHHHHHHTCSEE--E-----CSS---CC
T ss_pred HHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCc-CcEEeeCcEe-eHHHHHHHHHCCCCEE--E-----ECC---CC
Confidence 456788899999988776433333333444666664 333322 333 3466655545444444 3 221 12
Q ss_pred chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 236 GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 236 ~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.+.++..|+ .+.|++.| ++|++++.+..+.|||.+-+
T Consensus 100 ---~~v~~~ar~-~g~~~i~G--v~t~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 100 ---PKIVKLCQD-LNFPITPG--VNNPMAIEIALEMGISAVKF 136 (224)
T ss_dssp ---HHHHHHHHH-TTCCEECE--ECSHHHHHHHHHTTCCEEEE
T ss_pred ---HHHHHHHHH-hCCCEEec--cCCHHHHHHHHHCCCCEEEE
Confidence 244666666 67888886 99999999999999999866
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.58 Score=45.18 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=88.4
Q ss_pred cEEEEEeCCC---CCh-hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-
Q 021527 64 ALIPYITAGD---PDL-STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM- 138 (311)
Q Consensus 64 ~li~yi~~G~---P~~-~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~- 138 (311)
.+-.|-+ |+ .+. +.+.+.++.+.+.|.+.+++-+- + +++.-++.++.+|+.+
T Consensus 171 ~vp~~~s-g~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g------~----------------~~~~d~e~v~avR~avG 227 (428)
T 3bjs_A 171 RIPAYAG-GIALGYQPKESLAEEAQEYIARGYKALKLRIG------D----------------AARVDIERVRHVRKVLG 227 (428)
T ss_dssp CEEEEEE-SSCSCSCCHHHHHHHHHHHHHHTCSEEEEECC------S----------------CHHHHHHHHHHHHHHHC
T ss_pred ceeeeee-ccccCCChHHHHHHHHHHHHHCCCCEEEECCC------C----------------CHHHHHHHHHHHHHhcC
Confidence 3444644 32 455 88888899989999999998421 1 2334456777787753
Q ss_pred -CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 139 -SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 139 -~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
++++.+-. |. -+..+++.++.+.+.++|+..+- .|
T Consensus 228 ~d~~l~vDa--n~------------------------~~~~~eai~~~~~L~~~~i~~iE--qP---------------- 263 (428)
T 3bjs_A 228 DEVDILTDA--NT------------------------AYTMADARRVLPVLAEIQAGWLE--EP---------------- 263 (428)
T ss_dssp TTSEEEEEC--TT------------------------CCCHHHHHHHHHHHHHTTCSCEE--CC----------------
T ss_pred CCCEEEEEC--CC------------------------CCCHHHHHHHHHHHHhcCCCEEE--CC----------------
Confidence 56776532 21 12346777777778888776431 11
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcC-CcEEEE
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWG-ADGVIV 278 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~G-ADGvIV 278 (311)
++++..+..+++++.++ +||+.+-.+.++++++++++.| +|.+.+
T Consensus 264 ----------------~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 310 (428)
T 3bjs_A 264 ----------------FACNDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQP 310 (428)
T ss_dssp ----------------SCTTCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECC
T ss_pred ----------------CCccCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEe
Confidence 11122456888888888 9999999999999999999766 577765
|
| >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.86 Score=38.05 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC-----
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG----- 121 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G----- 121 (311)
|..++..|.+.. ..++.++...+.||--.-...-+...|..+|.+.+-+|.-- | -..+.+ .+.+.+
T Consensus 4 l~~l~~~~~~~~-~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~--p---~e~lv~---aa~~~~~diV~ 74 (161)
T 2yxb_A 4 LQSTRERVLGTP-RRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ--T---PEQVAM---AAVQEDVDVIG 74 (161)
T ss_dssp -------------CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC--C---HHHHHH---HHHHTTCSEEE
T ss_pred HHHHHHHHHhhc-CCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC--C---HHHHHH---HHHhcCCCEEE
Confidence 444566665421 12334444555565433334445566777888888887321 1 112222 222232
Q ss_pred ------CCHHHHHHHHHHhhcc-C-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHH
Q 021527 122 ------TNFNAILSMLKEVVPQ-M-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183 (311)
Q Consensus 122 ------~~~~~~~~~i~~ir~~-~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~ 183 (311)
.+.+.+-+.++.+++. . ++||++-|.. ..+..+.+.+.|+|+++.+|.+.+++.+
T Consensus 75 lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~-------~~~~~~~l~~~G~d~v~~~~~~~~~~~~ 137 (161)
T 2yxb_A 75 VSILNGAHLHLMKRLMAKLRELGADDIPVVLGGTI-------PIPDLEPLRSLGIREIFLPGTSLGEIIE 137 (161)
T ss_dssp EEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEECC-------CHHHHHHHHHTTCCEEECTTCCHHHHHH
T ss_pred EEeechhhHHHHHHHHHHHHhcCCCCCEEEEeCCC-------chhcHHHHHHCCCcEEECCCCCHHHHHH
Confidence 2345556666677654 2 5777777642 1223345677888888778776555433
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=94.61 E-value=1.6 Score=39.89 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=75.4
Q ss_pred CccEEEEEeCCCC-ChhhHHHHHHHHHHCCCCEEEEc-CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--
Q 021527 62 KVALIPYITAGDP-DLSTTAEALKLLDSCGSDIIELG-VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-- 137 (311)
Q Consensus 62 ~~~li~yi~~G~P-~~~~~~e~~~~L~~~GaD~IElG-~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-- 137 (311)
...++.=+.-||- +.+...+.++.+.++|+..|.|- --+ | .|..+ ++.++..+-|+.+++.
T Consensus 76 ~~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~--~--~~k~l-----------~~~~e~~~~I~aa~~a~~ 140 (275)
T 2ze3_A 76 AIPVNADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATG--L--TPTEL-----------YDLDSQLRRIEAARAAID 140 (275)
T ss_dssp SSCEEEECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCS--S--SSSCB-----------CCHHHHHHHHHHHHHHHH
T ss_pred CCCEEeecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcC--C--CCCcc-----------CCHHHHHHHHHHHHHhHh
Confidence 4567777788886 67889999999999999999993 111 0 11000 2344444455555432
Q ss_pred -CCCcEEEEecCcchhc-------cCHHHHHHH---HHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeEEEeC
Q 021527 138 -MSCPIALFTYYNPILK-------RGVDNFMST---VRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 138 -~~iPiilm~Y~n~i~~-------~g~~~fi~~---~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I~lis 200 (311)
..+|+.+.+--+.... .|.++-+++ +.++|+|+++++-+| .++..++ +++..+.......
T Consensus 141 ~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i---~~~~~~P~n~~~~ 212 (275)
T 2ze3_A 141 ASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLALQSQDIRAL---ADALRVPLNVMAF 212 (275)
T ss_dssp HHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTCCCHHHHHHH---HHHCSSCEEEECC
T ss_pred hcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---HHhcCCCEEEecC
Confidence 3688888764443322 256777764 577999999998887 3555544 4555565544433
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=94.60 E-value=3.7 Score=40.20 Aligned_cols=171 Identities=13% Similarity=0.146 Sum_probs=91.7
Q ss_pred HHHHHHHHcCC-ccEEEEE----eCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCH
Q 021527 52 ETFTRLKKQGK-VALIPYI----TAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNF 124 (311)
Q Consensus 52 ~~f~~~~~~~~-~~li~yi----~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~ 124 (311)
+.++++++..+ ..+..++ ..|+-.+ +...+.++.+.++|+|.+.+-.+.||. .
T Consensus 68 e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~Gvd~i~if~~~sd~----~---------------- 127 (464)
T 2nx9_A 68 QRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVFDAMNDV----R---------------- 127 (464)
T ss_dssp HHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCT----H----------------
T ss_pred HHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHHHHHhCCcCEEEEEEecCHH----H----------------
Confidence 34445444322 3344444 2365333 235677888899999999997666664 1
Q ss_pred HHHHHHHHHhhccCCCcEE-EEecCcchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHH-cCCCe
Q 021527 125 NAILSMLKEVVPQMSCPIA-LFTYYNPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMK-NKIEL 195 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPii-lm~Y~n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~-~gi~~ 195 (311)
++.+.++.+++. ...+. -.+|.. -..+..+ ++++.+.++|+|.|.++| +.+++..++...+++ .++.+
T Consensus 128 -ni~~~i~~ak~~-G~~v~~~i~~~~-~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~i 204 (464)
T 2nx9_A 128 -NMQQALQAVKKM-GAHAQGTLCYTT-SPVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVDVEL 204 (464)
T ss_dssp -HHHHHHHHHHHT-TCEEEEEEECCC-CTTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHCCSCE
T ss_pred -HHHHHHHHHHHC-CCEEEEEEEeee-CCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhcCCeE
Confidence 222344444443 22222 123321 1122333 456678899999999987 446777777777655 34443
Q ss_pred EEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhh
Q 021527 196 VLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 196 I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
-+-...+.--.-...++....|...+- |..| -|.+++ ++.+.+++..++.
T Consensus 205 ~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti~g-~gertG-N~~lE~lv~~L~~ 255 (464)
T 2nx9_A 205 HLHCHSTAGLADMTLLKAIEAGVDRVDTAISS-MSGTYG-HPATESLVATLQG 255 (464)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCSEEEEBCGG-GCSTTS-CCBHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHHhCCCEEEEeccc-cCCCCc-CHHHHHHHHHHHh
Confidence 333433333233334444456666663 3333 344433 3345666666654
|
| >2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.87 Score=42.61 Aligned_cols=202 Identities=15% Similarity=0.230 Sum_probs=108.5
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE---cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL---GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl---G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
..+-.|+..+.| +.++.+...|+|+|=| -+.|-| .-|.|..+... +.+.+.++. ...
T Consensus 18 ~~~~l~~n~~~p------~~~~~a~~~GadgVGL~RtE~l~ld-~e~~p~~~~q~----------~~~~~~~~~---~~~ 77 (324)
T 2xz9_A 18 KKVMLAANIGTP------KDVASALANGAEGVGLFRTEFLYMD-RNSLPSEEEQF----------EAYKEVVEK---MGG 77 (324)
T ss_dssp CEEEEEEEESSG------GGHHHHHHTTCSSEEEECCGGGTSS-SSSCCCHHHHH----------HHHHHHHHH---TTT
T ss_pred CEEEEEEECCCH------HHHHHHHhCCCCeEeehhhhhhhcc-CCCCCCHHHHH----------HHHHHHHHH---hCC
Confidence 346789999999 6778888999998721 112212 11233322111 111222222 235
Q ss_pred CcEEEEecC----------------cchhc-cCH-------H------HHHHHHHHcCCcEEEecCCC-hhh---HHHHH
Q 021527 140 CPIALFTYY----------------NPILK-RGV-------D------NFMSTVRDIGIRGLVVPDVP-LEE---TESLQ 185 (311)
Q Consensus 140 iPiilm~Y~----------------n~i~~-~g~-------~------~fi~~~~~aGadGviipDlp-~ee---~~~~~ 185 (311)
.|+++-+.. ||..- +|+ + +-+.++.+.|.++|++|-+- .+| +.++.
T Consensus 78 ~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~~p~~~~~ql~Ai~ra~~~G~~~ImvPmV~s~~E~~~a~~~v 157 (324)
T 2xz9_A 78 RPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLDRPDIFKTQLRAILRASAYGNVQIMYPMISSVEEVRKANSIL 157 (324)
T ss_dssp SCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHHCHHHHHHHHHHHHHHGGGSCEEEEECSCCCHHHHHHHHHHH
T ss_pred CceEEEeCCCCcchhhhhhccccccCcccccceeeeeccchhhHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHH
Confidence 678776532 44310 111 1 12233444599999999664 355 44444
Q ss_pred HHHHH----cCC------CeEEEeCCCChH--HHHHHHHHhCCceEEEEe------cCCcc-------CCCCCCCchHHH
Q 021527 186 KEAMK----NKI------ELVLFTTPTTPT--DRMKAIVEASEGFVYLVS------SIGVT-------GARASISGHVQT 240 (311)
Q Consensus 186 ~~~~~----~gi------~~I~lisp~t~~--eri~~i~~~a~gfiY~vs------~~G~T-------G~~~~~~~~~~~ 240 (311)
+.++. .|+ .+..++ .|+. ..+.+|++. -.|+.+.+ ..|+. ..-....+.+..
T Consensus 158 ~~~~~~~r~~G~~~~~~~~vg~mI--Etp~av~~~d~Ia~~-vD~~siGtnDLtq~~lg~dR~~~~~~~~~~~~~p~v~~ 234 (324)
T 2xz9_A 158 EEVKAELDREGVKYDKEIKVGIMV--EIPSAAVTADILAKE-VDFFSIGTNDLTQYTLAVDRMNEHVKEYYQPFHPAILR 234 (324)
T ss_dssp HHHHHHHHHHTCCCCTTCEEEEEE--CSHHHHHTHHHHTTT-CSEEEECHHHHHHHHTTCCTTCGGGGGGCCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCCCCcEEEEEE--CcHHHHHHHHHHHHh-CcEEEECHHHHHHHHhCCCCCcccccccCCCCCHHHHH
Confidence 43332 343 333444 4553 445666654 44555531 22211 001123456777
Q ss_pred HHHHHhhc---CCCcEEEeeCC-CCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 241 LLREIKES---STKPVAVGFGI-SKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 241 ~l~~vk~~---~~~Pv~vGfGI-st~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.++++-+. .++|+-+-+.+ .+++.+..+.+.|.|++.+++.-+-.+.
T Consensus 235 ai~~vv~aar~aG~~vgvcge~~~dp~~~~~l~~lG~~~~si~p~~i~~~~ 285 (324)
T 2xz9_A 235 LVKMVIDAAHKEGKFAAMCGEMAGDPLAAVILLGLGLDEFSMSATSIPEIK 285 (324)
T ss_dssp HHHHHHHHHHHTTCEEEECSGGGGCHHHHHHHHHHTCCEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHHCCceeecCccCCCHHHHHHHHHCCCCEEEEChhHHHHHH
Confidence 77776443 37887443333 4799999999999999999986555443
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.032 Score=53.46 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.+.++++|+.+++||+++ |+.++++++.+.++|+|+++|+.
T Consensus 214 ~~~i~~i~~~~~~Pv~vk-gv~t~e~a~~a~~aGad~I~vs~ 254 (380)
T 1p4c_A 214 WEALRWLRDLWPHKLLVK-GLLSAEDADRCIAEGADGVILSN 254 (380)
T ss_dssp HHHHHHHHHHCCSEEEEE-EECCHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHhcCCCEEEE-ecCcHHHHHHHHHcCCCEEEEcC
Confidence 478999999999999998 68999999999999999999954
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.53 Score=45.99 Aligned_cols=90 Identities=9% Similarity=-0.033 Sum_probs=57.7
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCC-CCC----------ChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSD-PLA----------DGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsD-P~a----------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
++.=+.++ -+.++..++++.++++|+|.|-+-+-... +.. .|+.+... .++++++
T Consensus 300 V~vKispd-~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~-------------sl~~i~~ 365 (443)
T 1tv5_A 300 VFVKLAPD-LNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDI-------------STKFICE 365 (443)
T ss_dssp EEEEECSC-CCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHH-------------HHHHHHH
T ss_pred EEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHH-------------HHHHHHH
Confidence 44444443 33458899999999999999999654321 111 13333221 2568888
Q ss_pred hhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 134 VVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 134 ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
+++.+ ++||+..+-.. . .+.+.++..+|||+|-+.
T Consensus 366 v~~~v~~~iPVIg~GGI~-----s-~~DA~e~l~aGAd~Vqig 402 (443)
T 1tv5_A 366 MYNYTNKQIPIIASGGIF-----S-GLDALEKIEAGASVCQLY 402 (443)
T ss_dssp HHHHTTTCSCEEEESSCC-----S-HHHHHHHHHTTEEEEEES
T ss_pred HHHHcCCCCcEEEECCCC-----C-HHHHHHHHHcCCCEEEEc
Confidence 88887 89999986322 1 234455566899999874
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=94.44 E-value=2 Score=40.45 Aligned_cols=124 Identities=10% Similarity=0.036 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCccEEEEEe-CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYIT-AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~-~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
..+.++.+++.=..-+-..+- .|--+.++..+.++.|++.|+ +|| +|+.| +
T Consensus 175 ~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE------~P~~~---------------------~ 226 (379)
T 2rdx_A 175 DIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-ILE------QPCRS---------------------Y 226 (379)
T ss_dssp HHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EEE------CCSSS---------------------H
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EEe------CCcCC---------------------H
Confidence 445566665431111222332 222356788999999999999 988 34322 2
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCC----ChhhHHHHHHHHHHcCCCeEEEeCCCCh
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV----PLEETESLQKEAMKNKIELVLFTTPTTP 204 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl----p~ee~~~~~~~~~~~gi~~I~lisp~t~ 204 (311)
+..+++++.+++||..-...+ +.++|.+.+.+-.+|.+.+ |+ .+.+..++...++++|+...+-....++
T Consensus 227 ~~~~~l~~~~~iPI~~de~i~-----~~~~~~~~i~~~~~d~v~i-k~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~ 300 (379)
T 2rdx_A 227 EECQQVRRVADQPMKLDECVT-----GLHMAQRIVADRGAEICCL-KISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGE 300 (379)
T ss_dssp HHHHHHHTTCCSCEEECTTCC-----SHHHHHHHHHHTCCSEEEE-ETTTTTSHHHHHHHHHHHHHTTCCEEEECSBCSH
T ss_pred HHHHHHHhhCCCCEEEeCCcC-----CHHHHHHHHHcCCCCEEEE-eccccCCHHHHHHHHHHHHHcCCeEEEeeccCcH
Confidence 466788888999998865432 4455666556666888655 33 2568888999999999998777556666
Q ss_pred HHH
Q 021527 205 TDR 207 (311)
Q Consensus 205 ~er 207 (311)
...
T Consensus 301 i~~ 303 (379)
T 2rdx_A 301 IAS 303 (379)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.19 Score=47.79 Aligned_cols=107 Identities=10% Similarity=-0.052 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCC-CCEEEEcCCC----------CCCC---------CCh
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCG-SDIIELGVPY----------SDPL---------ADG 107 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~G-aD~IElG~Pf----------sDP~---------aDG 107 (311)
..+.+.++.+++.-++.+..=+.++. +.+.+.++++.+.++| +|.|-+-+-+ ..|. +.|
T Consensus 179 e~~~~il~av~~~~~~PV~vKi~p~~-d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG 257 (354)
T 4ef8_A 179 DAMRQCLTAVSEVYPHSFGVKMPPYF-DFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGG 257 (354)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEECCCC-SHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEG
T ss_pred HHHHHHHHHHHHhhCCCeEEEecCCC-CHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCC
Confidence 35677777777766777888888876 6778888999999998 9999763221 1111 134
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 108 PVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 108 p~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
+.+...+ ++++.++++.. ++||+..+-.. ..+ .+.++..+|+|+|-+.
T Consensus 258 ~~i~p~a-------------~~~i~~v~~~~~~ipII~~GGI~-----s~~-da~~~l~aGAd~V~vg 306 (354)
T 4ef8_A 258 RYVLPTA-------------LANINAFYRRCPGKLIFGCGGVY-----TGE-DAFLHVLAGASMVQVG 306 (354)
T ss_dssp GGGHHHH-------------HHHHHHHHHHCTTSEEEEESCCC-----SHH-HHHHHHHHTEEEEEEC
T ss_pred CCCchHH-------------HHHHHHHHHhCCCCCEEEECCcC-----CHH-HHHHHHHcCCCEEEEh
Confidence 4443332 45788888765 79999876321 123 3444456899999884
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.35 Score=44.54 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCCcEEEe
Q 021527 156 VDNFMSTVRDIGIRGLVV 173 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvii 173 (311)
.++.++.+.+.|+||+++
T Consensus 23 l~~lv~~li~~Gv~gi~v 40 (297)
T 2rfg_A 23 LAGLVDWQIKHGAHGLVP 40 (297)
T ss_dssp HHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 345555555666666555
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=94.35 E-value=1.8 Score=40.43 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=97.2
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc-CCCCCCC---CChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG-VPYSDPL---ADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ 137 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG-~PfsDP~---aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~ 137 (311)
...++.=+.-||-+.+...+.++.+.++|+..|.|- --+ -|. ..|..+ +..++..+-|+.+++.
T Consensus 101 ~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iED~~~-~k~cgH~~gk~L-----------~p~~e~~~rI~Aa~~A 168 (318)
T 1zlp_A 101 NLCVVVDGDTGGGGPLNVQRFIRELISAGAKGVFLEDQVW-PKKCGHMRGKAV-----------VPAEEHALKIAAAREA 168 (318)
T ss_dssp SSEEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEEECBCS-SCCCSSSSCCCB-----------CCHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCC-CccccCCCCCcc-----------CCHHHHHHHHHHHHHh
Confidence 566777777788788889999999999999999983 100 000 001000 1222222333333322
Q ss_pred -CCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCeEEEeC-----CCChHHH
Q 021527 138 -MSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVPL-EETESLQKEAMKNKIELVLFTT-----PTTPTDR 207 (311)
Q Consensus 138 -~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~I~lis-----p~t~~er 207 (311)
...++.+.+--+.....|+++-+++ +.++|+|+++++-+|- ++.. ..+++..+..+..++ |..+.+.
T Consensus 169 ~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~~~~e~~~---~i~~~l~~P~lan~~~~g~~~~~~~~e 245 (318)
T 1zlp_A 169 IGDSDFFLVARTDARAPHGLEEGIRRANLYKEAGADATFVEAPANVDELK---EVSAKTKGLRIANMIEGGKTPLHTPEE 245 (318)
T ss_dssp HTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHH---HHHHHSCSEEEEEECTTSSSCCCCHHH
T ss_pred cccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCCCCHHHHH---HHHHhcCCCEEEEeccCCCCCCCCHHH
Confidence 2345666654444444567777764 5779999999988773 4444 444555555443333 4444444
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHc
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGW 271 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~ 271 (311)
+.+..-.++.+ |.+..+.. ...+.+..+.+++. +...+ --+.-+.+++.++...
T Consensus 246 ---L~~lGv~~v~~----~~~~~raa-~~a~~~~~~~l~~~g~~~~~--~~~~~~~~el~~l~~~ 300 (318)
T 1zlp_A 246 ---FKEMGFHLIAH----SLTAVYAT-ARALVNIMKILKEKGTTRDD--LDQMATFSEFNELISL 300 (318)
T ss_dssp ---HHHHTCCEEEE----CSHHHHHH-HHHHHHHHHHHHHHSCSTTC--GGGSCCHHHHHHHHTH
T ss_pred ---HHHcCCeEEEE----chHHHHHH-HHHHHHHHHHHHHcCCcccc--cccCCCHHHHHHhcCH
Confidence 44444444433 22222211 12244556666653 21111 1233355666665543
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.24 Score=45.70 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=35.8
Q ss_pred hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 237 HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 237 ~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+++.++.++. ++|+.+-+||+ ++++.++.+.|+|++.||+.+..
T Consensus 229 ~~k~av~~v~~--~ipi~AsGGIt-~eni~~~a~tGvD~IsVgs~~~~ 273 (286)
T 1x1o_A 229 ALREAVRRVGG--RVPLEASGNMT-LERAKAAAEAGVDYVSVGALTHS 273 (286)
T ss_dssp HHHHHHHHHTT--SSCEEEESSCC-HHHHHHHHHHTCSEEECTHHHHS
T ss_pred HHHHHHHHhCC--CCeEEEEcCCC-HHHHHHHHHcCCCEEEEcHHHcC
Confidence 34444555543 58999999996 89999999999999999987764
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=94.30 E-value=2.5 Score=43.74 Aligned_cols=146 Identities=13% Similarity=0.117 Sum_probs=80.0
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC----cchh-c
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY----NPIL-K 153 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~----n~i~-~ 153 (311)
..+.++.+.++|+|.+.+-...+| ++++-..++.+++.-..-.+..+|. ++.- .
T Consensus 199 ~~~~i~~a~~~Gvd~irIf~s~n~---------------------l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~ 257 (718)
T 3bg3_A 199 VFKFCEVAKENGMDVFRVFDSLNY---------------------LPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTK 257 (718)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCC---------------------HHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCT
T ss_pred hHHHHHHHHhcCcCEEEEEecHHH---------------------HHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCC
Confidence 467888888999999999644432 2233344555554322112223454 2221 1
Q ss_pred cCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEE-Ee
Q 021527 154 RGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYL-VS 223 (311)
Q Consensus 154 ~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs 223 (311)
+..+ ++++.+.++|++-|.++| +.+++..++...+++. ++.+-+-...+.--.-...++....|...+ .+
T Consensus 258 ~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~t 337 (718)
T 3bg3_A 258 YSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVA 337 (718)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEEec
Confidence 1333 455667889999999998 4467777777776653 344333333333223333444445676666 34
Q ss_pred cCCccCCCCCCCchHHHHHHHHhh
Q 021527 224 SIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
..|. |.+++ ++.+.+++..++.
T Consensus 338 i~Gl-GertG-N~~lE~vv~~L~~ 359 (718)
T 3bg3_A 338 ADSM-SGMTS-QPSMGALVACTRG 359 (718)
T ss_dssp CGGG-CSTTS-CCBHHHHHHHHTT
T ss_pred Cccc-ccccC-chhHHHHHHHHHh
Confidence 4443 44433 3345666666654
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=94.30 E-value=3.3 Score=39.19 Aligned_cols=181 Identities=12% Similarity=0.009 Sum_probs=101.2
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEc--------CCCCCCCCC----hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELG--------VPYSDPLAD----GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG--------~PfsDP~aD----Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
=+++...+.++...++|||++=+| -|++ .... |...-. .. -..|...+ -+..+++.+++.++|
T Consensus 32 gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~-~~fq~~~~~~~~y~-~~--~~~~l~~e-~~~~L~~~~~~~Gi~ 106 (349)
T 2wqp_A 32 GSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEA-KQVIPGNADVSIYE-IM--ERCALNEE-DEIKLKEYVESKGMI 106 (349)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGG-GGCCCTTCSSCHHH-HH--HHHCCCHH-HHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHhCCCEEeeeecccccccCcch-hccccCCCCccHHH-HH--HHhCCCHH-HHHHHHHHHHHhCCe
Confidence 367899999999999999999998 5644 1111 111111 11 12355554 456777777888988
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHH---HHHHHhCCce
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRM---KAIVEASEGF 218 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri---~~i~~~a~gf 218 (311)
++--.+ + .+-++.+.+.|+|.+=|+---.-. ..|.+.+.+.|-.+++-....|.+|.. +.+.+....+
T Consensus 107 ~~st~~-d-------~~svd~l~~~~v~~~KI~S~~~~n-~~LL~~va~~gkPviLstGmat~~Ei~~Ave~i~~~G~~i 177 (349)
T 2wqp_A 107 FISTLF-S-------RAAALRLQRMDIPAYKIGSGECNN-YPLIKLVASFGKPIILSTGMNSIESIKKSVEIIREAGVPY 177 (349)
T ss_dssp EEEEEC-S-------HHHHHHHHHHTCSCEEECGGGTTC-HHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHHHTCCE
T ss_pred EEEeeC-C-------HHHHHHHHhcCCCEEEECcccccC-HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 776332 1 345666677789988886221112 235566666785544433344433321 2222223345
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE---eeCCCCHHHHHHHHHcCCc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV---GFGISKPEHVQQVAGWGAD 274 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v---GfGIst~e~v~~v~~~GAD 274 (311)
+.|- ++++..+..+.-....+..+|+.+ ++||.. ..|+ .-......+|||
T Consensus 178 iLlh---c~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~G~---~~~~AAvAlGA~ 231 (349)
T 2wqp_A 178 ALLH---CTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLDN---YACLGAVALGGS 231 (349)
T ss_dssp EEEE---CCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSSSS---HHHHHHHHHTCC
T ss_pred EEEe---ccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCCcH---HHHHHHHHhCCC
Confidence 5553 344332221111235588888988 899844 1243 334445568999
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=94.28 E-value=1 Score=41.11 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=97.4
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
|.-|.+.+.+.++.+.++|+|.|-+.--- -+++ -.+.++-.++++.+.+..+- |+.-+-.|..
T Consensus 15 g~iD~~~l~~lv~~li~~Gv~gl~v~GtT----GE~~------------~Ls~eEr~~v~~~~~~~~~g-ViaGvg~~~t 77 (288)
T 2nuw_A 15 GKVNVDALKTHAKNLLEKGIDAIFVNGTT----GLGP------------ALSKDEKRQNLNALYDVTHK-LIFQVGSLNL 77 (288)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEETSTT----TTGG------------GSCHHHHHHHHHHHTTTCSC-EEEECCCSCH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc----cChh------------hCCHHHHHHHHHHHHHHhCC-eEEeeCCCCH
Confidence 55677899999999999999999884111 0111 14566777788888776544 5544433322
Q ss_pred hccCHHHHHHHHHHcCCcEEEec--C----CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCceE
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVP--D----VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviip--D----lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gfi 219 (311)
. ..-+..+.+.++|+||+++. - ...++..+ |...++..++..+++=.| +.+.+-+.++ .++
T Consensus 78 ~--~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L-----nIv 150 (288)
T 2nuw_A 78 N--DVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSL-----PVK 150 (288)
T ss_dssp H--HHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTTT-----TEE
T ss_pred H--HHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhcc-----EEE
Confidence 1 12356777888999999883 2 22244444 556667778877665433 2233433332 333
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+=. .+| ++ ..+.++++. .+.-|+.|.. +.+-..+.. +||+|-|++
T Consensus 151 giKd---ssg-------d~-~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~-~~G~is~~a 197 (288)
T 2nuw_A 151 GIKD---TNQ-------DL-AHSLEYKLNLPGVKVYNGSN----TLIYYSLLS-LDGVVASFT 197 (288)
T ss_dssp EEEE---CCS-------CH-HHHHHHHHHSTTCEEEECCG----GGHHHHHTT-SSEEECGGG
T ss_pred EEEe---CCC-------CH-HHHHHHHhcCCCeEEEECcH----HHHHHHHHH-hCEEEecHH
Confidence 2210 111 12 234444441 1345655543 345555567 999999876
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.68 Score=43.41 Aligned_cols=134 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred CccEEEEEeCCC-CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 62 KVALIPYITAGD-PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 62 ~~~li~yi~~G~-P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
+..+..+.+.|. ++.+.+.+.++.+.+.|.+.+++-+ +|-.| ++.++.+|+.+.-
T Consensus 127 ~~~~~~~~~~g~~~~~~~~~~~a~~~~~~Gf~~vKik~---~~~~~---------------------~e~v~avr~~~g~ 182 (368)
T 1sjd_A 127 RDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKI---EPGWD---------------------VEPVRAVRERFGD 182 (368)
T ss_dssp CSEEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC---BTTBS---------------------HHHHHHHHHHHCT
T ss_pred CCCccceEEeeCCCCHHHHHHHHHHHHHhCccEEEEec---CchhH---------------------HHHHHHHHHhcCC
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
-+-++.-.|. -+..++ .++.+.+.++|+..+-
T Consensus 183 ~~~l~vDan~------------------------~~~~~~-~~~~~~l~~~~i~~iE----------------------- 214 (368)
T 1sjd_A 183 DVLLQVDANT------------------------AYTLGD-APQLARLDPFGLLLIE----------------------- 214 (368)
T ss_dssp TSEEEEECTT------------------------CCCGGG-HHHHHTTGGGCCSEEE-----------------------
T ss_pred CceEEEeccC------------------------CCCHHH-HHHHHHHHhcCCCeEe-----------------------
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEE
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIV 278 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIV 278 (311)
..+++...+..+++++.+++||+.+-.+.++++++++++.| +|.+.+
T Consensus 215 -----------~P~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 262 (368)
T 1sjd_A 215 -----------QPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNI 262 (368)
T ss_dssp -----------CCSCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred -----------CCCChhhHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEEEe
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=94.25 E-value=1.9 Score=39.97 Aligned_cols=123 Identities=12% Similarity=0.194 Sum_probs=73.4
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC---CCHHHHHHHHHHhh---
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVV--- 135 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G---~~~~~~~~~i~~ir--- 135 (311)
...++.=+.-||-+.+...+.++.+.++|+..|.|- |-+. | .+ + ..-.| ++.++..+-|+..+
T Consensus 80 ~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iE----Dq~~--~--Kr-c--gh~~gk~l~~~~e~~~rI~Aa~~A~ 148 (302)
T 3fa4_A 80 STPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIE----DQVQ--T--KR-C--GHLAGKILVDTDTYVTRIRAAVQAR 148 (302)
T ss_dssp TSCEEEECTTTTSSHHHHHHHHHHHHHTTCCEEEEC----SBCC--C------------CCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCcEEEEC----CCCC--C--cc-c--CCCCCCeecCHHHHHHHHHHHHHHH
Confidence 456777777788777788899999999999999993 2111 0 00 0 00011 23333333333332
Q ss_pred ccCCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHc-CCCeEE
Q 021527 136 PQMSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKN-KIELVL 197 (311)
Q Consensus 136 ~~~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~-gi~~I~ 197 (311)
++.+.+++++.-.+.+...|+++-+++ +.++|+|++.++-+. ..+++...++.. +..++.
T Consensus 149 ~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~~--~~~ei~~~~~~~~~~Pl~~ 212 (302)
T 3fa4_A 149 QRIGSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFLEGIT--SREMARQVIQDLAGWPLLL 212 (302)
T ss_dssp HHHTCCCEEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETTCC--CHHHHHHHHHHTTTSCEEE
T ss_pred HhcCCCEEEEEEecccccCCHHHHHHHHHHHHHcCCCEEeecCCC--CHHHHHHHHHHhcCCceeE
Confidence 223567888765555556788888775 477999999888654 233455555554 344433
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.33 Score=45.02 Aligned_cols=112 Identities=13% Similarity=0.242 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHcCCcEEEe-------cCCChhhHHHHHHHHHHcC--CCeEEEeCCCChHHHHHHHHHh-CCceEEEEec
Q 021527 155 GVDNFMSTVRDIGIRGLVV-------PDVPLEETESLQKEAMKNK--IELVLFTTPTTPTDRMKAIVEA-SEGFVYLVSS 224 (311)
Q Consensus 155 g~~~fi~~~~~aGadGvii-------pDlp~ee~~~~~~~~~~~g--i~~I~lisp~t~~eri~~i~~~-a~gfiY~vs~ 224 (311)
+.++.++.+.+.|+||+++ +-|..||..++.+.+.+.- +.+|.-+..+++.+-++..... ..|+..+...
T Consensus 30 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~ 109 (313)
T 3dz1_A 30 SIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIA 109 (313)
T ss_dssp HHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3456777777888888777 3466677666666555542 3344444434444333221111 1233333222
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcCC--CcEEE-------eeCCCCHHHHHHHHH
Q 021527 225 IGVTGARASISGHVQTLLREIKESST--KPVAV-------GFGISKPEHVQQVAG 270 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~v-------GfGIst~e~v~~v~~ 270 (311)
... .. .....+.++.+.|.+.++ +||++ |..++ +|.+.++.+
T Consensus 110 ~P~--~~-~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~-~~~~~~La~ 160 (313)
T 3dz1_A 110 PPP--SL-RTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMT-PKVIRQIVM 160 (313)
T ss_dssp CCT--TC-CSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCC-HHHHHHHHH
T ss_pred CCC--CC-CCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCC-HHHHHHHHH
Confidence 121 11 123456667777766666 88766 55664 777877764
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.23 E-value=1 Score=42.70 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=88.4
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHC-CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CC
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSC-GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SC 140 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~-GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~i 140 (311)
.+-.|.+.|..+.+...+.++.+.+. |...+=+-+-.. +.++-++.++.+|+.+ ++
T Consensus 137 ~v~~~~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------------~~~~d~~~v~avR~a~g~~~ 195 (383)
T 3i4k_A 137 KVDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAG---------------------DPAEDTRRVAELAREVGDRV 195 (383)
T ss_dssp EEEBCEEECSCCHHHHHHHHHHHHHHHCCSEEEEECCSS---------------------CHHHHHHHHHHHHHTTTTTS
T ss_pred eEEEeEEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC---------------------CHHHHHHHHHHHHHHcCCCC
Confidence 34456666666678888888877766 999988743211 2234456788888764 46
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
++.+-. |.- +..+++.++.+.++++|+..|- .|
T Consensus 196 ~l~vDa--n~~------------------------~~~~~A~~~~~~l~~~~i~~iE--qP------------------- 228 (383)
T 3i4k_A 196 SLRIDI--NAR------------------------WDRRTALHYLPILAEAGVELFE--QP------------------- 228 (383)
T ss_dssp EEEEEC--TTC------------------------SCHHHHHHHHHHHHHTTCCEEE--SC-------------------
T ss_pred EEEEEC--CCC------------------------CCHHHHHHHHHHHHhcCCCEEE--CC-------------------
Confidence 666642 311 1235666677777777766542 11
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
++++..+.++++++.+++||+.|-.+.++++++++++.| +|.+.+-
T Consensus 229 -------------~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k 275 (383)
T 3i4k_A 229 -------------TPADDLETLREITRRTNVSVMADESVWTPAEALAVVKAQAADVIALK 275 (383)
T ss_dssp -------------SCTTCHHHHHHHHHHHCCEEEESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred -------------CChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEEc
Confidence 112223557788888889999999999999999998765 7888774
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.059 Score=48.35 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=61.8
Q ss_pred HHHHHHHcCCcEEEec-CCC----------hhhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHHh--CCceEEE
Q 021527 159 FMSTVRDIGIRGLVVP-DVP----------LEETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVEA--SEGFVYL 221 (311)
Q Consensus 159 fi~~~~~aGadGviip-Dlp----------~ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~~--a~gfiY~ 221 (311)
-++.+.+.|+|-|=+. ++. .+|...+++.|...-+++|+=. .|.++ +.+.+.++. ..|..|+
T Consensus 85 E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~-eei~~a~~ia~~aGADfV 163 (231)
T 3ndo_A 85 EAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGE-PLLADVCRVARDAGADFV 163 (231)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCH-HHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCH-HHHHHHHHHHHHHCcCEE
Confidence 3456788898876442 221 1234445555532222222211 11233 333333333 3477777
Q ss_pred EecCCcc--CCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHcCCc--EE
Q 021527 222 VSSIGVT--GARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGWGAD--GV 276 (311)
Q Consensus 222 vs~~G~T--G~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~GAD--Gv 276 (311)
=+.+|.+ |. ... +-++.+|+. .+++|-+.+||++.+++.+++++||+ |.
T Consensus 164 KTSTGf~~~~g---At~---edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~RiGt 218 (231)
T 3ndo_A 164 KTSTGFHPSGG---ASV---QAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRLGL 218 (231)
T ss_dssp ECCCSCCTTCS---CCH---HHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred EcCCCCCCCCC---CCH---HHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcchhccc
Confidence 6666643 32 112 223333443 36899999999999999999999999 66
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.73 Score=43.48 Aligned_cols=133 Identities=13% Similarity=0.074 Sum_probs=88.5
Q ss_pred EEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEE
Q 021527 66 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIA 143 (311)
Q Consensus 66 i~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPii 143 (311)
-.|.+.|..+.+...+.++.+.+.|...+=+-+- .+.++-++.++.+|+.+ ++++.
T Consensus 131 ~~~~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG----------------------~~~~~d~~~v~avR~~~g~~~~l~ 188 (368)
T 3q45_A 131 QTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVG----------------------GSKELDVERIRMIREAAGDSITLR 188 (368)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECC----------------------SCHHHHHHHHHHHHHHHCSSSEEE
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCeEEEEec----------------------CCHHHHHHHHHHHHHHhCCCCeEE
Confidence 4466677777788999999988999999887421 11223356777777753 56666
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+- .|.- +..+++.++.+.++++|+..+- .|
T Consensus 189 vD--aN~~------------------------~~~~~A~~~~~~l~~~~i~~iE--qP---------------------- 218 (368)
T 3q45_A 189 ID--ANQG------------------------WSVETAIETLTLLEPYNIQHCE--EP---------------------- 218 (368)
T ss_dssp EE--CTTC------------------------BCHHHHHHHHHHHGGGCCSCEE--CC----------------------
T ss_pred EE--CCCC------------------------CChHHHHHHHHHHhhcCCCEEE--CC----------------------
Confidence 53 2311 1235566666677777766542 11
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhh
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGS 280 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGS 280 (311)
++++..+.++++++.+++||+.|-.+.++++++++++.| +|.+.+--
T Consensus 219 ----------~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~ 266 (368)
T 3q45_A 219 ----------VSRNLYTALPKIRQACRIPIMADESCCNSFDAERLIQIQACDSFNLKL 266 (368)
T ss_dssp ----------BCGGGGGGHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred ----------CChhHHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEech
Confidence 111122457788888899999999999999999998754 68887753
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=3.1 Score=37.47 Aligned_cols=116 Identities=17% Similarity=0.265 Sum_probs=67.5
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-C
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-S 139 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~ 139 (311)
|++.+..=++ ..+.+...+.++.+.+.|+|+||+=+=|-+.. .+.+++.+.+.++|+.. +
T Consensus 18 g~PkIcvpl~--~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~-----------------~~~~~v~~~l~~lr~~~~~ 78 (258)
T 4h3d_A 18 GRPKICVPII--GKNKKDIIKEAKELKDACLDIIEWRVDFFENV-----------------ENIKEVKEVLYELRSYIHD 78 (258)
T ss_dssp SSCEEEEEEC--CSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTT-----------------TCHHHHHHHHHHHHHHCTT
T ss_pred CCCEEEEEeC--CCCHHHHHHHHHHHhhcCCCEEEEeecccccc-----------------CCHHHHHHHHHHHHHhcCC
Confidence 5554443333 35678888999999999999999964332111 13345556777887764 6
Q ss_pred CcEEEEecCcchhccC-----HHH---HHHHHHHcC-CcEEEe-cCCChhhHHHHHHHHHHcCCCeEE
Q 021527 140 CPIALFTYYNPILKRG-----VDN---FMSTVRDIG-IRGLVV-PDVPLEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g-----~~~---fi~~~~~aG-adGvii-pDlp~ee~~~~~~~~~~~gi~~I~ 197 (311)
+|+++- |- +....| -+. +.+.+.+.| +|-+=+ -+.+.+...++.+.+++.|.++|.
T Consensus 79 lPiI~T-~R-t~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~ 144 (258)
T 4h3d_A 79 IPLLFT-FR-SVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVII 144 (258)
T ss_dssp SCEEEE-CC-CGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEE-Ee-chhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEE
Confidence 897764 32 222222 232 344555555 565422 123323345677777888877664
|
| >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... | Back alignment and structure |
|---|
Probab=94.14 E-value=0.91 Score=41.41 Aligned_cols=179 Identities=16% Similarity=0.127 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHHCCCCE--EEE--cC-----CCCCCC-CChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 76 LSTTAEALKLLDSCGSDI--IEL--GV-----PYSDPL-ADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~--IEl--G~-----PfsDP~-aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
.+...+.++.|.+.|.+. +.+ -. |-+.|+ . .|..+++.++++++++++..+|+.--
T Consensus 16 ~~~~~~~A~~l~~~~~~~~~~~~v~k~~f~KapRTs~~sf--------------~G~g~~~GL~~l~~~~~e~Glp~~te 81 (267)
T 2nwr_A 16 EELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSF--------------RGHGLEYGVKALRKVKEEFGLKITTD 81 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEECBSCCTTCSSTTSC--------------CCSCHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhcCccEEEeeccccCCCCCCCCC--------------cCccHHHHHHHHHHHHHhcCCeEEEe
Confidence 467888888888875443 333 21 555554 2 33457778899999988899998774
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC--ChHHH---HHHHHHhCCceEE
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT--TPTDR---MKAIVEASEGFVY 220 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~--t~~er---i~~i~~~a~gfiY 220 (311)
. +++. -++.+.+ .+|-+-++-.-..... +..++.+.| .+|.+-+.+ +..+. .+.+......-+.
T Consensus 82 ~-~d~~-------~~~~l~~-~vd~~~IgA~~~rn~~-ll~~~a~~~-~PV~lK~G~~~t~~e~~~Av~~i~~~GN~~i~ 150 (267)
T 2nwr_A 82 I-HESW-------QAEPVAE-VADIIQIPAFLCRQTD-LLLAAAKTG-RAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIY 150 (267)
T ss_dssp C-SSGG-------GHHHHHT-TCSEEEECGGGTTCHH-HHHHHHTTT-SEEEEECCTTCCGGGGHHHHHHHHHTTCSSEE
T ss_pred c-CCHH-------hHHHHHh-cCCEEEECcccccCHH-HHHHHHcCC-CcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 3 2322 2233334 5899888843333333 444455566 456666655 33322 2222222322333
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----------eeCCCC-------HHHHHHHHHcCCcEEEEhhHhh
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----------GFGISK-------PEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----------GfGIst-------~e~v~~v~~~GADGvIVGSaiv 283 (311)
+.-+.+..+.. ....++ ..+..+|+. + ||++ |+|=++ +.-+.+....||||++|=|-+.
T Consensus 151 L~~rG~~~~y~-~~~~dl-~~i~~lk~~-~-pVivD~sH~~q~p~G~s~hs~g~~~~~~~ia~aava~Ga~G~mIE~H~~ 226 (267)
T 2nwr_A 151 LTERGTTFGYN-NLVVDF-RSLPIMKQW-A-KVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPE 226 (267)
T ss_dssp EEECCEECSSS-CEECCT-THHHHHTTT-S-EEEEETTGGGCCTTC------CCGGGHHHHHHHHHHHCCSEEEEEEESC
T ss_pred EEECCCCCCCC-ccccCH-HHHHHHHHc-C-CEEEcCCcccccCCCcCcCCCCchhHHHHHHHHHHHcCCCEEEEEecCC
Confidence 32111111211 100122 246677776 5 9988 444333 3445666789999999987765
|
| >3ijd_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: C2F; 2.00A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.22 Score=46.69 Aligned_cols=209 Identities=11% Similarity=0.091 Sum_probs=118.2
Q ss_pred HHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 021527 56 RLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV 135 (311)
Q Consensus 56 ~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir 135 (311)
+++++-....++|+++++-+.+.+.+++..+.+.|++-+--|-|-++.. .+..+....+++++..
T Consensus 83 ~i~~~~gi~~v~Hltc~~~t~~ei~~~L~~~~~~GI~niLRGDpp~~~~---------------~~~~~~~A~~l~~~~~ 147 (315)
T 3ijd_A 83 NYLKDLKIPKIIYRCVGKYTPDEFRRLTRPVSGQDAFSVFVGAASRNQS---------------VLLKLSDAYKIRQDVN 147 (315)
T ss_dssp HHCTTSCSCEEEEEEGGGSCHHHHHHHHSCCTTCCCEEEEECCCC-------------------CCSCHHHHHHHHHHHC
T ss_pred HHHHHhCCCceeeeeeCCCCHHHHHHHHHHHHHcCCcEEecCCCCCCCC---------------CCcCHHHHHHHHHhcC
Confidence 3333434578999999999999999999999999998886785554421 1112222234444332
Q ss_pred ccCCCcEEEEecCcchhccCH---HHHHHHHHHcCCcEEEecCC-ChhhHHHHH----HHHHHcCC---CeEEEeCCCCh
Q 021527 136 PQMSCPIALFTYYNPILKRGV---DNFMSTVRDIGIRGLVVPDV-PLEETESLQ----KEAMKNKI---ELVLFTTPTTP 204 (311)
Q Consensus 136 ~~~~iPiilm~Y~n~i~~~g~---~~fi~~~~~aGadGviipDl-p~ee~~~~~----~~~~~~gi---~~I~lisp~t~ 204 (311)
.+.-|.+-+|-+ .+... -+.++.=.++|||-++--=+ ..+...+|. +.|++.|+ ..++-+.|-++
T Consensus 148 --~~F~IGvA~yPe--~H~~~~~d~~~Lk~KvdAGAdf~ITQ~ffD~e~~~~f~~~~~~~~r~~Gi~~vPIipGImPi~s 223 (315)
T 3ijd_A 148 --PDLLLGGVAIPE--RHMKNTDEHLRIIDKINKGCKYFITQAVYNVEAAKDFLSDYYYYSKNNNLKMVPIIFTLTPCGS 223 (315)
T ss_dssp --TTSEEEEEECGG--GHHHHSCHHHHHHHHHHTTCCEEEESCCCCHHHHHHHHHHHHHHHHHTTBCCCCEEEEECCCCS
T ss_pred --CCEEEEEEECCC--CCCCHHHHHHHHHHHHHCCCCEEEccccCCHHHHHHHHHHHHHHHHHCCCCCCcEEEEeeecCC
Confidence 234466666644 21111 12333345799998766422 124455666 67888887 46677888877
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEE--EEhhHh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGV--IVGSAM 282 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGv--IVGSai 282 (311)
...++.+ . +.|. .+|.. +++++.+.-+ |..+|.-+. .|+++++++. +||+ =+|-.+
T Consensus 224 ~k~~~f~-~-------------~~G~--~IP~~---l~~~l~~~~d-~~~~Gi~~a-~e~~~~L~~~-~~g~~~p~G~ni 281 (315)
T 3ijd_A 224 TKTLEFM-K-------------WLGI--SIPRW---LENDLMNCED-ILNKSVSLS-KSIFNELMEF-CLEKGIPIGCNI 281 (315)
T ss_dssp HHHHHHH-H-------------HHTC--CCCHH---HHHHHHTTCC-CHHHHHHHH-HHHHHHHHHH-HHHHTCCEEEEE
T ss_pred HHHHHHH-h-------------cCCC--CCCHH---HHHHHHhCCC-HHHHHHHHH-HHHHHHHHHh-cCcCCcCCCccH
Confidence 6554332 1 1232 46654 4555544434 544566565 5888888877 6533 333222
Q ss_pred hchhhhcCCchhHHHHHHHHHHHHHhh
Q 021527 283 VKLLGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 283 v~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
.... ..++.++.--++.+.+|.-
T Consensus 282 esv~----~rk~ei~as~~l~~~~~~~ 304 (315)
T 3ijd_A 282 ESVS----VRKVEIEASIALAKDIKYI 304 (315)
T ss_dssp EECC----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHH----hHHHHHHHHHHHHHHHHHH
Confidence 2211 1244455555666666653
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=94.12 E-value=2.1 Score=40.44 Aligned_cols=136 Identities=10% Similarity=0.020 Sum_probs=91.6
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~i 140 (311)
..+-.|.+.|..+.+...+.++.+.+.|.+.+-+-+-. +.++-.+.++.+|+.+ ++
T Consensus 133 ~~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiK~G~----------------------~~~~d~~~v~avR~a~g~~~ 190 (378)
T 3eez_A 133 TPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGG----------------------DVERDIARIRDVEDIREPGE 190 (378)
T ss_dssp SCEEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------------CHHHHHHHHHHHTTSCCTTC
T ss_pred CeEEEEEEecCCCHHHHHHHHHHHHhCCCCEEEeccCC----------------------CHHHHHHHHHHHHHHcCCCc
Confidence 34556777777778899999999999999999885311 2234467888888875 56
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
++.+- .|.- +..+++.++.+.+.++|+ .+- .
T Consensus 191 ~l~vD--an~~------------------------~~~~~a~~~~~~l~~~~i-~iE--q-------------------- 221 (378)
T 3eez_A 191 IVLYD--VNRG------------------------WTRQQALRVMRATEDLHV-MFE--Q-------------------- 221 (378)
T ss_dssp EEEEE--CTTC------------------------CCHHHHHHHHHHTGGGTC-CEE--C--------------------
T ss_pred eEEEE--CCCC------------------------CCHHHHHHHHHHhccCCe-EEe--c--------------------
Confidence 66553 2311 112445555555555554 220 0
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhh
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMV 283 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv 283 (311)
.++ + .+.++++|+.+++||+.|-.+.++++++++++.| +|.+.+.-.-.
T Consensus 222 ------------P~~-~-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~ 271 (378)
T 3eez_A 222 ------------PGE-T-LDDIAAIRPLHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRV 271 (378)
T ss_dssp ------------CSS-S-HHHHHHTGGGCCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred ------------CCC-C-HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchhc
Confidence 111 1 2457888888999999999999999999999766 79998864443
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=94.12 E-value=1 Score=41.98 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=69.2
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCC---ChHHHHHHHHHHHHcC---CCHHHHHHHHHHh--
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLA---DGPVIQAAATRSLARG---TNFNAILSMLKEV-- 134 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~a---DGp~Iq~a~~~Al~~G---~~~~~~~~~i~~i-- 134 (311)
..++.=+.-||-+.+...+.++.+.++|+..|.|- |-.. -|.. .| +..++..+-|+..
T Consensus 89 ~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iE----Dq~~~k~cgh~----------~gk~l~~~~e~~~rI~Aa~~ 154 (307)
T 3lye_A 89 PPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLE----DQILTKRCGHL----------SGKKVVSRDEYLVRIRAAVA 154 (307)
T ss_dssp CCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEEC----CBCCCC------------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEc----CCCCCcccCCC----------CCCeecCHHHHHHHHHHHHH
Confidence 56676667787777788899999999999999993 2111 1100 01 2333322223222
Q ss_pred -hccCCCcEEEEecCcchhccCHHHHHHHH---HHcCCcEEEecCCCh-hhHHHHHHHH
Q 021527 135 -VPQMSCPIALFTYYNPILKRGVDNFMSTV---RDIGIRGLVVPDVPL-EETESLQKEA 188 (311)
Q Consensus 135 -r~~~~iPiilm~Y~n~i~~~g~~~fi~~~---~~aGadGviipDlp~-ee~~~~~~~~ 188 (311)
++..+.+++++.-.+.....|+++-++++ .++|+|++.++-++- |+..++.+.+
T Consensus 155 A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~~~~~~~~~i~~~~ 213 (307)
T 3lye_A 155 TKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEGFRSKEQAAAAVAAL 213 (307)
T ss_dssp HHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCCSCHHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHc
Confidence 33346678887655555556888888754 679999999987653 4444444443
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=1.7 Score=41.35 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
..+.++.+++.+.+.-+..+.-++ .+.++...++|+|.+.+-++.||- +. - ..+.+.++.++
T Consensus 53 ~~~~~~~i~~~~~~~~v~~~~r~~------~~di~~a~~~g~~~v~i~~~~s~~----------~~-~-~~~~s~~e~l~ 114 (382)
T 2ztj_A 53 SRKDAEVLASLGLKAKVVTHIQCR------LDAAKVAVETGVQGIDLLFGTSKY----------LR-A-PHGRDIPRIIE 114 (382)
T ss_dssp HHHHHHHHHTSCCSSEEEEEEESC------HHHHHHHHHTTCSEEEEEECC--------------------CCCHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEEcccC------hhhHHHHHHcCCCEEEEEeccCHH----------HH-H-HhCCCHHHHHH
Confidence 345566666555443332222222 244677788999999998777762 11 1 34556555444
Q ss_pred ----HHHHhhccCCCcEEEEecCcchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc---CCCe
Q 021527 130 ----MLKEVVPQMSCPIALFTYYNPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN---KIEL 195 (311)
Q Consensus 130 ----~i~~ir~~~~iPiilm~Y~n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~---gi~~ 195 (311)
.++.+++.-...-+-+ ++...+++..+ +.++.+.++ ++.+.++| +.+++..++.+.+++. ++.+
T Consensus 115 ~~~~~v~~ak~~g~~~~v~~-~~ed~~~~~~~~~~~~~~~~~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~i 192 (382)
T 2ztj_A 115 EAKEVIAYIREAAPHVEVRF-SAEDTFRSEEQDLLAVYEAVAPY-VDRVGLADTVGVATPRQVYALVREVRRVVGPRVDI 192 (382)
T ss_dssp HHHHHHHHHHHHCTTSEEEE-EETTTTTSCHHHHHHHHHHHGGG-CSEEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHcCCCEEEEE-EEEeCCCCCHHHHHHHHHHHHHh-cCEEEecCCCCCCCHHHHHHHHHHHHHhcCCCCeE
Confidence 3444444321112222 33345555554 345567778 99999988 4467777777777664 3333
Q ss_pred EEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCC
Q 021527 196 VLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARAS 233 (311)
Q Consensus 196 I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~ 233 (311)
-+-...+.--.-...++....|..++- |..| -|.+++
T Consensus 193 ~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~G-lGeraG 230 (382)
T 2ztj_A 193 EFHGHNDTGCAIANAYEAIEAGATHVDTTILG-IGERNG 230 (382)
T ss_dssp EEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGG-CSSTTC
T ss_pred EEEeCCCccHHHHHHHHHHHhCCCEEEEcccc-cccccc
Confidence 233333332233334444456776663 4443 344443
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=94.07 E-value=2.2 Score=39.25 Aligned_cols=107 Identities=17% Similarity=0.309 Sum_probs=67.6
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
.||..+| .-.|..+.+++++.++..++.|+|.+-+--||-.+. +-+.+++..++|.+.++
T Consensus 79 ~grvpVi--aGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~------------------s~~~l~~~f~~va~a~~ 138 (306)
T 1o5k_A 79 DGKIPVI--VGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKP------------------TQEGLYQHYKYISERTD 138 (306)
T ss_dssp TTSSCEE--EECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC------------------CHHHHHHHHHHHHTTCS
T ss_pred CCCCeEE--EcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCC------------------CHHHHHHHHHHHHHhCC
Confidence 3555554 456888999999999999999999999998884321 22455677788888889
Q ss_pred CcEEEEecCcchhccCH---HHHHHHHH-Hc-CCcEEEecCCChhhHHHHHHHHH
Q 021527 140 CPIALFTYYNPILKRGV---DNFMSTVR-DI-GIRGLVVPDVPLEETESLQKEAM 189 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~---~~fi~~~~-~a-GadGviipDlp~ee~~~~~~~~~ 189 (311)
+||++ |-+|- ++|. .+.+.++. +. .+-|+=...-..+...++++.+.
T Consensus 139 lPiil--Yn~P~-~tg~~l~~~~~~~La~~~pnIvgiKdssgd~~~~~~~~~~~~ 190 (306)
T 1o5k_A 139 LGIVV--YNVPG-RTGVNVLPETAARIAADLKNVVGIXEANPDIDQIDRTVSLTK 190 (306)
T ss_dssp SCEEE--EECHH-HHSCCCCHHHHHHHHHHCTTEEEEEECCCCHHHHHHHHHHHH
T ss_pred CCEEE--EeCcc-ccCcCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHhcC
Confidence 99887 55554 2232 23344443 32 23444333323345555555444
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=94.03 E-value=1.9 Score=40.41 Aligned_cols=166 Identities=11% Similarity=0.086 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCCc-cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 51 AETFTRLKKQGKV-ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 51 ~~~f~~~~~~~~~-~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
.+.++++++..+. .+..+..+|.-. .+.++...++|+|.+.+-.|.+|- .. ..+
T Consensus 70 ~e~l~~i~~~~~~~~i~~l~~p~~~~----~~~i~~a~~aGvd~v~I~~~~s~~----~~-----------------~~~ 124 (345)
T 1nvm_A 70 LEYIEAVAGEISHAQIATLLLPGIGS----VHDLKNAYQAGARVVRVATHCTEA----DV-----------------SKQ 124 (345)
T ss_dssp HHHHHHHHTTCSSSEEEEEECBTTBC----HHHHHHHHHHTCCEEEEEEETTCG----GG-----------------GHH
T ss_pred HHHHHHHHhhCCCCEEEEEecCCccc----HHHHHHHHhCCcCEEEEEEeccHH----HH-----------------HHH
Confidence 4455555544333 333333333322 457777888999999997666552 11 122
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcC---CCeEEEe
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNK---IELVLFT 199 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~g---i~~I~li 199 (311)
.++..++. ...+.... .....+..+ +.++.+.+.|++-|-++| +.+++..++.+.++++- +.+-+-.
T Consensus 125 ~i~~ak~~-G~~v~~~~--~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~ 201 (345)
T 1nvm_A 125 HIEYARNL-GMDTVGFL--MMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHA 201 (345)
T ss_dssp HHHHHHHH-TCEEEEEE--ESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEEC
T ss_pred HHHHHHHC-CCEEEEEE--EeCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 33333332 22332221 112233443 455567889999999998 34677777777777652 3322222
Q ss_pred CCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHh
Q 021527 200 TPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 200 sp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk 246 (311)
..+.--.-...++....|..++- +..| -|.+++. ..+++++.-++
T Consensus 202 Hn~~G~avAn~laA~~aGa~~vd~tv~G-lG~~aGN-~~le~lv~~L~ 247 (345)
T 1nvm_A 202 HHNLSLGVANSIVAVEEGCDRVDASLAG-MGAGAGN-APLEVFIAVAE 247 (345)
T ss_dssp BCTTSCHHHHHHHHHHTTCCEEEEBGGG-CSSTTCB-CBHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHcCCCEEEecchh-ccCCccC-cCHHHHHHHHH
Confidence 22222222233334445666663 4444 3444332 33455555554
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=4.5 Score=40.44 Aligned_cols=171 Identities=12% Similarity=0.127 Sum_probs=91.5
Q ss_pred HHHHHHHHcCC-ccEEEEE----eCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCH
Q 021527 52 ETFTRLKKQGK-VALIPYI----TAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNF 124 (311)
Q Consensus 52 ~~f~~~~~~~~-~~li~yi----~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~ 124 (311)
+.+.++++..+ ..+..++ ..|+-.+ +...+.++.+.++|+|.+.+-.+.||- .
T Consensus 85 e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~~aGvd~vrIf~s~sd~----~---------------- 144 (539)
T 1rqb_A 85 ERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDP----R---------------- 144 (539)
T ss_dssp HHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCT----H----------------
T ss_pred HHHHHHHHhCCCCEEEEEeccccccCcccCcccccHHHHHHHHhCCCCEEEEEEehhHH----H----------------
Confidence 34445544322 3344444 2365433 235677888899999999997666663 1
Q ss_pred HHHHHHHHHhhccCCCcE-EEEecCcchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHH-c--CC
Q 021527 125 NAILSMLKEVVPQMSCPI-ALFTYYNPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMK-N--KI 193 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPi-ilm~Y~n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~-~--gi 193 (311)
++.+.++.+++. ...+ +.++|.. -..+..+ ++++.+.++|+|.|.++| +.+.+..++...+++ . ++
T Consensus 145 -ni~~~i~~ak~~-G~~v~~~i~~~~-~~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i 221 (539)
T 1rqb_A 145 -NMAHAMAAVKKA-GKHAQGTICYTI-SPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKT 221 (539)
T ss_dssp -HHHHHHHHHHHT-TCEEEEEEECCC-STTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred -HHHHHHHHHHHC-CCeEEEEEEeee-CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCc
Confidence 223445555543 2222 1223321 1223333 456678889999999988 446677777666654 3 44
Q ss_pred CeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhh
Q 021527 194 ELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 194 ~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
.+-+-...+.--.-...++....|...+- +..| -|.+++ +..+.+++..++.
T Consensus 222 ~I~~H~Hnd~GlAvAN~laAveAGa~~VD~ti~g-~GertG-N~~lE~lv~~L~~ 274 (539)
T 1rqb_A 222 QINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISS-MSLGPG-HNPTESVAEMLEG 274 (539)
T ss_dssp CEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGG-GCSTTS-BCBHHHHHHHTTT
T ss_pred eEEEEeCCCCChHHHHHHHHHHhCCCEEEEeccc-cCCCcc-ChhHHHHHHHHHh
Confidence 44344443333233333444456766663 3433 344433 3445666666654
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=94.00 E-value=1.8 Score=40.01 Aligned_cols=122 Identities=12% Similarity=0.164 Sum_probs=71.8
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc--C-CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-c
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG--V-PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-Q 137 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG--~-PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~ 137 (311)
...++.=+.-||-+.+...+.++.+.++|+..|.|- . |-.-.-..|..+ +..++..+-|+..++ +
T Consensus 83 ~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l-----------~~~~e~~~ri~Aa~~A~ 151 (298)
T 3eoo_A 83 NLPLLVDIDTGWGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKEC-----------VPAGEMVDRIKAAVDAR 151 (298)
T ss_dssp CSCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCB-----------CCHHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCee-----------cCHHHHHHHHHHHHHhc
Confidence 455776666788777888999999999999999993 1 100000011100 122222223322222 2
Q ss_pred CCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeEE
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I~ 197 (311)
.+.+++++.--+.....|+++-+++ +.++|+|++.++-++ .||..++ +++.+..++.
T Consensus 152 ~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~~~~ee~~~~---~~~~~~Pl~~ 212 (298)
T 3eoo_A 152 TDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAMKTLDDYRRF---KEAVKVPILA 212 (298)
T ss_dssp SSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHHHH---HHHHCSCBEE
T ss_pred cCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCCCCHHHHHHH---HHHcCCCeEE
Confidence 3566777765555555677777765 477999999998775 3444444 4444555443
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.54 Score=44.37 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCcEEEe-------cCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh-CCceEEEEecCCc
Q 021527 156 VDNFMSTVRDIGIRGLVV-------PDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA-SEGFVYLVSSIGV 227 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvii-------pDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~-a~gfiY~vs~~G~ 227 (311)
.++.++.+.+.|+||+++ +-|..||..++.+....-.+.+|.-+..+++.+-++..... ..|+..++.....
T Consensus 49 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~ 128 (344)
T 2hmc_A 49 LVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRV 128 (344)
T ss_dssp HHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 355666677777777766 23556666555554323335555555544444333221111 1133222211111
Q ss_pred cCCCCCCCchHHHHHHHHhh-cCCCcEEE------eeCCCCHHHHHHH-HHc
Q 021527 228 TGARASISGHVQTLLREIKE-SSTKPVAV------GFGISKPEHVQQV-AGW 271 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~-~~~~Pv~v------GfGIst~e~v~~v-~~~ 271 (311)
.. +......+.++.+.|.+ .+++||++ |..+ ++|.+.++ .+.
T Consensus 129 y~-~~~s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l-~~e~~~~L~a~~ 178 (344)
T 2hmc_A 129 LS-RGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFAT-RADLFFALRAEH 178 (344)
T ss_dssp SS-STTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCC-CHHHHHHHHHHC
T ss_pred cC-CCCCHHHHHHHHHHHHhhCCCCcEEEEecCccCCCc-CHHHHHHHHhcC
Confidence 11 10113446666777766 66677554 3334 46777777 544
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.94 Score=41.72 Aligned_cols=137 Identities=18% Similarity=0.282 Sum_probs=90.3
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~i 140 (311)
+-+.. +.+-||.. .+-.+++.|.+.|+..+ +.+|-.- +-||.+=|.- .+.|.++++..++|++.++. ..+
T Consensus 96 PV~Ag-v~~~DP~~-~~g~~Le~lk~~Gf~Gv-~N~ptvg-lidG~fr~~L----EE~gm~~~~eve~I~~A~~~gL~Ti 167 (286)
T 2p10_A 96 PVLAG-VNGTDPFM-VMSTFLRELKEIGFAGV-QNFPTVG-LIDGLFRQNL----EETGMSYAQEVEMIAEAHKLDLLTT 167 (286)
T ss_dssp CEEEE-ECTTCTTC-CHHHHHHHHHHHTCCEE-EECSCGG-GCCHHHHHHH----HHTTCCHHHHHHHHHHHHHTTCEEC
T ss_pred CEEEE-ECCcCCCc-CHHHHHHHHHHhCCceE-EECCCcc-cccchhhhhH----hhcCCCHHHHHHHHHHHHHCCCeEE
Confidence 34445 88888876 45566699999999999 9877422 5678664431 27899999999999888763 223
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-CC------------Chh----hHHHHHHHHHHcCCCeEEEeC--C
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-DV------------PLE----ETESLQKEAMKNKIELVLFTT--P 201 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-Dl------------p~e----e~~~~~~~~~~~gi~~I~lis--p 201 (311)
| |.+ . .+-.+.+.++|+|.+++. -+ ..+ ...+..+.+++.+-+.+.++. |
T Consensus 168 ~-----~v~-----~-~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGp 236 (286)
T 2p10_A 168 P-----YVF-----S-PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGP 236 (286)
T ss_dssp C-----EEC-----S-HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTT
T ss_pred E-----ecC-----C-HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 3 222 2 345667889999987762 11 122 245667777888777666653 5
Q ss_pred CChHHHHHHHHHh---CCce
Q 021527 202 TTPTDRMKAIVEA---SEGF 218 (311)
Q Consensus 202 ~t~~eri~~i~~~---a~gf 218 (311)
-+..+....+.++ ..||
T Consensus 237 IstpeDv~~~l~~t~G~~G~ 256 (286)
T 2p10_A 237 IANPEDARFILDSCQGCHGF 256 (286)
T ss_dssp CCSHHHHHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHhcCCCccEE
Confidence 5555666666676 4555
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.96 E-value=1.6 Score=40.10 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=76.5
Q ss_pred HHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc--C-CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q 021527 55 TRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG--V-PYSDPLADGPVIQAAATRSLARGTNFNAILSML 131 (311)
Q Consensus 55 ~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG--~-PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i 131 (311)
+...+.-...++.=+.-||-+.+...+.++.+.++|++.|.|- . |-..--.+|.+ ++.++..+-|
T Consensus 75 ~~I~r~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl------------~~~~e~~~~I 142 (287)
T 3b8i_A 75 TRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDL------------ICVEEGVGKI 142 (287)
T ss_dssp HHHHTTCSSCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCB------------CCHHHHHHHH
T ss_pred HHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCc------------cCHHHHHHHH
Confidence 3333333445777677777778889999999999999999982 1 11110112221 2333444455
Q ss_pred HHhhcc-CCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCeE
Q 021527 132 KEVVPQ-MSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVPL-EETESLQKEAMKNKIELV 196 (311)
Q Consensus 132 ~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~I 196 (311)
+.+++. ...++.+.+--+. ...|+++-+++ +.++|+|+++++-+|- ++.. ..+++..+..+
T Consensus 143 ~aa~~a~~~~~~~i~aRtda-a~~gl~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~---~i~~~~~~P~i 208 (287)
T 3b8i_A 143 RAALEARVDPALTIIARTNA-ELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLE---AIAEHLHIPLM 208 (287)
T ss_dssp HHHHHHCCSTTSEEEEEEET-TTSCHHHHHHHHHHHHHTTCSEEEEECCCSHHHHH---HHHTTCCSCEE
T ss_pred HHHHHcCCCCCcEEEEechh-hhcCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHH---HHHHhCCCCEE
Confidence 555432 2345666654344 45678887765 5779999999988772 4444 44455567666
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.13 Score=51.44 Aligned_cols=67 Identities=31% Similarity=0.355 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.+|.+.+.+..-.++.+-+..| -...+.+.++.+|+.. ++|| ++++|.|+|.++.+.++|||+|-||
T Consensus 283 ~eR~~aLv~AGvD~iviD~ahG-------hs~~v~~~i~~ik~~~p~~~v-iaGNVaT~e~a~~Li~aGAD~vkVG 350 (556)
T 4af0_A 283 KDRLKLLAEAGLDVVVLDSSQG-------NSVYQIEFIKWIKQTYPKIDV-IAGNVVTREQAAQLIAAGADGLRIG 350 (556)
T ss_dssp HHHHHHHHHTTCCEEEECCSCC-------CSHHHHHHHHHHHHHCTTSEE-EEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhcCCcEEEEecccc-------ccHHHHHHHHHHHhhCCcceE-EeccccCHHHHHHHHHcCCCEEeec
Confidence 3677777665545554433332 2345678899999875 6777 6677888999999999999999997
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.15 Score=46.54 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=62.0
Q ss_pred HHHHHHHcCCcEEEec-CCC----------hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh--CCceEEEEecC
Q 021527 159 FMSTVRDIGIRGLVVP-DVP----------LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA--SEGFVYLVSSI 225 (311)
Q Consensus 159 fi~~~~~aGadGviip-Dlp----------~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~--a~gfiY~vs~~ 225 (311)
-++.+.+.|||-|=+. ++. .+|...+++.|...-+++|+=..--+ ++.+...++. ..|..|+=+++
T Consensus 116 Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt-~eei~~A~~ia~eaGADfVKTST 194 (260)
T 3r12_A 116 EAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLD-TEEKIAACVISKLAGAHFVKTST 194 (260)
T ss_dssp HHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCC-HHHHHHHHHHHHHTTCSEEECCC
T ss_pred HHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCC-HHHHHHHHHHHHHhCcCEEEcCC
Confidence 3456888899976542 221 12344455554322223332112223 3444444343 34777776665
Q ss_pred CccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHcCCc--EE
Q 021527 226 GVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGWGAD--GV 276 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~GAD--Gv 276 (311)
|.... +... +-++.+|+. .+++|-+.+||+|.+++.+++++||+ |.
T Consensus 195 Gf~~~--GAT~---edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~RiGt 244 (260)
T 3r12_A 195 GFGTG--GATA---EDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGT 244 (260)
T ss_dssp SSSSC--CCCH---HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCC--CCCH---HHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeec
Confidence 53211 1122 223333333 36899999999999999999999999 66
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.73 Score=43.21 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=85.4
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCc
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCP 141 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iP 141 (311)
.+-.|.+.|..+.+...+.++.+.+.|...+-+-+- .+ .++-++.++.+|+. .+++
T Consensus 128 ~v~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~g-~~---------------------~~~d~~~v~avR~a~g~~~~ 185 (354)
T 3jva_A 128 QVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVG-TG---------------------IEADIARVKAIREAVGFDIK 185 (354)
T ss_dssp EEECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECC-SC---------------------HHHHHHHHHHHHHHHCTTSE
T ss_pred eeeeeEEeCCCCHHHHHHHHHHHHHhCCCeEEEEeC-CC---------------------HHHHHHHHHHHHHHcCCCCe
Confidence 343456667777788899999988999999887421 11 12234567777765 3556
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+.+-. |.- +..+++.++.+.++++|+..+
T Consensus 186 l~vDa--n~~------------------------~~~~~a~~~~~~L~~~~i~~i------------------------- 214 (354)
T 3jva_A 186 LRLDA--NQA------------------------WTPKDAVKAIQALADYQIELV------------------------- 214 (354)
T ss_dssp EEEEC--TTC------------------------SCHHHHHHHHHHTTTSCEEEE-------------------------
T ss_pred EEEEC--CCC------------------------CCHHHHHHHHHHHHhcCCCEE-------------------------
Confidence 55532 210 122444444444444443322
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHh
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAM 282 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSai 282 (311)
. ..++++..+.++++++.+++||+.|-.+.+++++.++++.| +|.+.+--.-
T Consensus 215 E---------qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~ 267 (354)
T 3jva_A 215 E---------QPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMK 267 (354)
T ss_dssp E---------CCSCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred E---------CCCChhhHHHHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchh
Confidence 1 01222223567888888899999999999999999988654 6998885433
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.63 Score=42.72 Aligned_cols=114 Identities=10% Similarity=0.051 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCcEEEe-------cCCChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHh-CCceEEEEec
Q 021527 156 VDNFMSTVRDIGIRGLVV-------PDVPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEA-SEGFVYLVSS 224 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvii-------pDlp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~-a~gfiY~vs~ 224 (311)
.++.++.+.+.|+||+++ +-|..||..++.+.+.+. .+.+|.-+..++..+-++..... ..|...++..
T Consensus 26 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 105 (294)
T 3b4u_A 26 MIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLA 105 (294)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEc
Confidence 456777777888888776 346667776666665543 23455555554544433222111 1243333222
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcC---CCcEEE-------eeCCCCHHHHHHHH-Hc
Q 021527 225 IGVTGARASISGHVQTLLREIKESS---TKPVAV-------GFGISKPEHVQQVA-GW 271 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~---~~Pv~v-------GfGIst~e~v~~v~-~~ 271 (311)
.... .+.....++.++.++|.+.+ ++||++ |..+ +++.+.++. +.
T Consensus 106 ~P~y-~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l-~~~~~~~La~~~ 161 (294)
T 3b4u_A 106 PPSY-FKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTL-SVELVGRLKAAF 161 (294)
T ss_dssp CCCS-SCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCC-CHHHHHHHHHHC
T ss_pred CCcC-CCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCC-CHHHHHHHHHhC
Confidence 1211 11012345666777777766 788765 3444 478887777 54
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.12 Score=46.14 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=60.5
Q ss_pred HHHHHHcCCcEEEec-CCC----------hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh--CCceEEEEecCC
Q 021527 160 MSTVRDIGIRGLVVP-DVP----------LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA--SEGFVYLVSSIG 226 (311)
Q Consensus 160 i~~~~~aGadGviip-Dlp----------~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~--a~gfiY~vs~~G 226 (311)
++. .+.|+|.|=+. ++. .+|...+++.|...++++|+=..--+ ++.+...++. ..|..|+=+++|
T Consensus 73 ~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt-~eei~~a~~ia~eaGADfVKTSTG 150 (226)
T 1vcv_A 73 VSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLR-DEERYTLYDIIAEAGAHFIKSSTG 150 (226)
T ss_dssp HHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCC-HHHHHHHHHHHHHHTCSEEECCCS
T ss_pred HHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCC-HHHHHHHHHHHHHcCCCEEEeCCC
Confidence 345 66777766331 211 13445556666544445443211112 3334444443 246667766666
Q ss_pred cc--------CCCCCCCchHHHHHHH-Hhhc-CCCcEEEeeCCCCHHHHHHHHHc---CCc
Q 021527 227 VT--------GARASISGHVQTLLRE-IKES-STKPVAVGFGISKPEHVQQVAGW---GAD 274 (311)
Q Consensus 227 ~T--------G~~~~~~~~~~~~l~~-vk~~-~~~Pv~vGfGIst~e~v~~v~~~---GAD 274 (311)
.+ |...+...+..+++++ ++.. .++||-+.+||+|.+++.++.++ ||+
T Consensus 151 f~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 151 FAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGED 211 (226)
T ss_dssp CCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSC
T ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 54 0011222222233333 2322 24899999999999999999999 988
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.16 Score=46.51 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=37.7
Q ss_pred chHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 236 GHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 236 ~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+.+.++.++.. .++|+.+-+|| +++++.++.+.|+|++.|||.+..
T Consensus 214 ~~l~~~v~~l~~~~~~~~i~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~~ 262 (273)
T 2b7n_A 214 LETKEIAAYRDAHYPFVLLEASGNI-SLESINAYAKSGVDAISVGALIHQ 262 (273)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHTTTCSEEECTHHHHT
T ss_pred HHHHHHHHHhhccCCCcEEEEECCC-CHHHHHHHHHcCCcEEEEcHHhcC
Confidence 3444445555543 35899999999 589999999999999999999774
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=1.1 Score=41.08 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=51.5
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
|..+| .-.|..+.+++++.++..++.|+|.+-+--||-.+. +-+.+++..++|.+.+++|
T Consensus 77 rvpvi--aGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~------------------s~~~l~~~f~~va~a~~lP 136 (301)
T 3m5v_A 77 KVKVL--AGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKP------------------TQQGLYEHYKAIAQSVDIP 136 (301)
T ss_dssp SCEEE--EECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC------------------CHHHHHHHHHHHHHHCSSC
T ss_pred CCeEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC------------------CHHHHHHHHHHHHHhCCCC
Confidence 44444 456889999999999999999999999998884331 2235566777887778999
Q ss_pred EEEEecCcch
Q 021527 142 IALFTYYNPI 151 (311)
Q Consensus 142 iilm~Y~n~i 151 (311)
|++ |-+|-
T Consensus 137 iil--Yn~P~ 144 (301)
T 3m5v_A 137 VLL--YNVPG 144 (301)
T ss_dssp EEE--EECHH
T ss_pred EEE--EeCch
Confidence 987 54453
|
| >3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=93.77 E-value=1.2 Score=35.96 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=62.9
Q ss_pred cEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhh
Q 021527 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 169 dGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
.-+++=|=+ ....-+...+++.|...+..+. ...+.++.+.+.....+.+- ..-|. +-.++++++|+
T Consensus 14 rILiVDD~~-~~r~~l~~~L~~~G~~~v~~a~--~g~~al~~~~~~~~DlillD~~MP~m---------dG~el~~~ir~ 81 (134)
T 3to5_A 14 KILIVDDFS-TMRRIVKNLLRDLGFNNTQEAD--DGLTALPMLKKGDFDFVVTDWNMPGM---------QGIDLLKNIRA 81 (134)
T ss_dssp CEEEECSCH-HHHHHHHHHHHHTTCCCEEEES--SHHHHHHHHHHHCCSEEEEESCCSSS---------CHHHHHHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHHHcCCcEEEEEC--CHHHHHHHHHhCCCCEEEEcCCCCCC---------CHHHHHHHHHh
Confidence 344444432 2344567778888987555433 34455555545444444442 11112 23578899986
Q ss_pred c---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 248 S---STKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 248 ~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
. .++||++=.+-.+.+++.+..+.|||+.+.
T Consensus 82 ~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~ 115 (134)
T 3to5_A 82 DEELKHLPVLMITAEAKREQIIEAAQAGVNGYIV 115 (134)
T ss_dssp STTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 4 368999999999999999999999999865
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=93.72 E-value=3.6 Score=37.30 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=79.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh---ccCCCcEE--EEecCc-c-hh
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV---PQMSCPIA--LFTYYN-P-IL 152 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir---~~~~iPii--lm~Y~n-~-i~ 152 (311)
.+.++.+.++|+|.|.+.++-|| . +. ....+.+.++.++.++++. ++..+++. +..-+. + -.
T Consensus 82 ~~~i~~a~~~G~~~V~i~~~~S~----~------h~-~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~ 150 (295)
T 1ydn_A 82 MKGYEAAAAAHADEIAVFISASE----G------FS-KANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDG 150 (295)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCH----H------HH-HHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTE
T ss_pred HHHHHHHHHCCCCEEEEEEecCH----H------HH-HHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCC
Confidence 46677888899999999765553 2 11 1123455555555544432 23455553 221110 0 01
Q ss_pred ccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-C-CCeEEEeCCCC--hHHHHHHHHHhCCceEEE
Q 021527 153 KRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-K-IELVLFTTPTT--PTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 153 ~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-g-i~~I~lisp~t--~~eri~~i~~~a~gfiY~ 221 (311)
.+.. .+|++.+.+.|+|.+-++| +.+++..++.+.+++. . +.+.+-...+. ..... ++....|.-++
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~--l~Ai~aG~~~v 228 (295)
T 1ydn_A 151 PVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNI--RVSLEKGLRVF 228 (295)
T ss_dssp ECCHHHHHHHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHH--HHHHHHTCCEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHH--HHHHHhCCCEE
Confidence 2233 4566777799999999987 4456777777766653 2 33444442222 22222 22223354444
Q ss_pred -EecCCccCC-----CCCCCchHHHHHHHHhh
Q 021527 222 -VSSIGVTGA-----RASISGHVQTLLREIKE 247 (311)
Q Consensus 222 -vs~~G~TG~-----~~~~~~~~~~~l~~vk~ 247 (311)
.+..|.-|. +.+ +..+++++..+++
T Consensus 229 d~sv~GlG~cp~a~g~~G-N~~~e~lv~~l~~ 259 (295)
T 1ydn_A 229 DASVGGLGGCPFAPGAKG-NVDTVAVVEMLHE 259 (295)
T ss_dssp EEBTTCCSCBTTBTTSCC-BCBHHHHHHHHHH
T ss_pred EeccccCCCCCCCCCCcC-ChhHHHHHHHHHh
Confidence 355554221 333 2335566666654
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.51 Score=44.68 Aligned_cols=126 Identities=10% Similarity=0.053 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCccEEEEEeC-CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITA-GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~-G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
..+.++.+++.=. -+-..+-+ |--+.++..++++.|++.|+++|| +|+.. .+ +
T Consensus 177 ~~e~v~avr~a~g-d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE------qP~~~---------------~~----~ 230 (384)
T 2pgw_A 177 DLEITAAVRGEIG-DARLRLDANEGWSVHDAINMCRKLEKYDIEFIE------QPTVS---------------WS----I 230 (384)
T ss_dssp HHHHHHHHHTTST-TCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE------CCSCT---------------TC----H
T ss_pred HHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEe------CCCCh---------------hh----H
Confidence 4455665554311 12223321 222467889999999999999999 34321 01 3
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCC----ChhhHHHHHHHHHHcCCCeEEEeCCCCh
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV----PLEETESLQKEAMKNKIELVLFTTPTTP 204 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl----p~ee~~~~~~~~~~~gi~~I~lisp~t~ 204 (311)
+..+++++.+++||..-...+ +.++|.+.+.+-.+|.+. +|+ .+.+..++...++++|+...+-.+..++
T Consensus 231 ~~~~~l~~~~~iPI~~de~i~-----~~~~~~~~i~~~~~d~v~-ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~ 304 (384)
T 2pgw_A 231 PAMAHVREKVGIPIVADQAAF-----TLYDVYEICRQRAADMIC-IGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTG 304 (384)
T ss_dssp HHHHHHHHHCSSCEEESTTCC-----SHHHHHHHHHTTCCSEEE-ECHHHHTSHHHHHHHHHHHHHTTCCEEECCCSCCH
T ss_pred HHHHHHHhhCCCCEEEeCCcC-----CHHHHHHHHHcCCCCEEE-EcchhhCCHHHHHHHHHHHHHCCCeEeeccCcCCH
Confidence 466778888899998865332 345555555555577764 443 2467888999999999997776556666
Q ss_pred HHH
Q 021527 205 TDR 207 (311)
Q Consensus 205 ~er 207 (311)
...
T Consensus 305 i~~ 307 (384)
T 2pgw_A 305 ITT 307 (384)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=93.67 E-value=2.5 Score=38.98 Aligned_cols=188 Identities=15% Similarity=0.177 Sum_probs=97.0
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC-----CCHHHHHHHHHHhhc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG-----TNFNAILSMLKEVVP 136 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G-----~~~~~~~~~i~~ir~ 136 (311)
...++.=+.-||-+.+...+.++.+.++|+..|.|- |+..+..-... .| +..++..+-|+.+++
T Consensus 79 ~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iE--------D~~~~k~cgH~---gg~~k~l~p~~e~~~rI~Aa~~ 147 (295)
T 1s2w_A 79 DVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLE--------DKLFPKTNSLH---DGRAQPLADIEEFALKIKACKD 147 (295)
T ss_dssp SSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEE--------CBCC-----------CTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCEEecCCCCCCCHHHHHHHHHHHHHcCCcEEEEC--------CCCCCcccccc---CCCCCcccCHHHHHHHHHHHHH
Confidence 445887778888777889999999999999999993 22111111100 11 233343444444443
Q ss_pred c-CCCcEEEEecCcch-hccCHHHHHHH---HHHcCCcEEEecC-CC-hhhHHHHHHHHHHcCCCeEEEeC--CCChHHH
Q 021527 137 Q-MSCPIALFTYYNPI-LKRGVDNFMST---VRDIGIRGLVVPD-VP-LEETESLQKEAMKNKIELVLFTT--PTTPTDR 207 (311)
Q Consensus 137 ~-~~iPiilm~Y~n~i-~~~g~~~fi~~---~~~aGadGviipD-lp-~ee~~~~~~~~~~~gi~~I~lis--p~t~~er 207 (311)
. ...++.+.+--+.. ...|.++-+++ +.++|+|++++.- +| .++..++.+.++. .+..+...+ +.++.+
T Consensus 148 a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~-~~P~i~~~~~~~~~~~~- 225 (295)
T 1s2w_A 148 SQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWNN-QGPVVIVPTKYYKTPTD- 225 (295)
T ss_dssp HCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCSSSSHHHHHHHHHHTT-CSCEEECCSTTTTSCHH-
T ss_pred hcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcCC-CCCEEEeCCCCCCCCHH-
Confidence 2 24456666533333 34567777764 5789999998864 66 5666666655431 144443222 124433
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHc
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGW 271 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~ 271 (311)
++.+..-..+.+ |.+..+.. ...+.+..+.+++. +...+ .-.+.+.+++.++...
T Consensus 226 --eL~~lGv~~v~~----~~~~~raa-~~a~~~~~~~i~~~g~~~~~--~~~~~~~~e~~~~~~~ 281 (295)
T 1s2w_A 226 --HFRDMGVSMVIW----ANHNLRAS-VSAIQQTTKQIYDDQSLVNV--EDKIVSVKEIFRLQRD 281 (295)
T ss_dssp --HHHHHTCCEEEE----CSHHHHHH-HHHHHHHHHHHHHHSSSTTT--GGGSCCHHHHHHC---
T ss_pred --HHHHcCCcEEEE----ChHHHHHH-HHHHHHHHHHHHHcCCccch--hhcCCCHHHHHHhcCH
Confidence 444444444332 22222211 12244556666653 21111 1334455666555543
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=1.8 Score=40.51 Aligned_cols=152 Identities=15% Similarity=0.206 Sum_probs=82.6
Q ss_pred HHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh----hccCCCcEEEEecCcc---hhcc
Q 021527 82 ALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV----VPQMSCPIALFTYYNP---ILKR 154 (311)
Q Consensus 82 ~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i----r~~~~iPiilm~Y~n~---i~~~ 154 (311)
.++.+.++|+|.|.+-++-||- . ++ -..+.+.++.++.++++ ++ ....+.+- ... ..++
T Consensus 101 ~i~~a~~~g~~~v~i~~~~s~~----~-~~------~~~~~s~~e~l~~~~~~v~~ak~-~G~~v~~~--~~~~~~~~~~ 166 (337)
T 3ble_A 101 TVDWIKDSGAKVLNLLTKGSLH----H-LE------KQLGKTPKEFFTDVSFVIEYAIK-SGLKINVY--LEDWSNGFRN 166 (337)
T ss_dssp HHHHHHHHTCCEEEEEEECSHH----H-HH------HHTCCCHHHHHHHHHHHHHHHHH-TTCEEEEE--EETHHHHHHH
T ss_pred hHHHHHHCCCCEEEEEEecCHH----H-HH------HHhCCCHHHHHHHHHHHHHHHHH-CCCEEEEE--EEECCCCCcC
Confidence 6777788999999997666541 1 11 12345555555444443 33 33443322 111 2223
Q ss_pred CHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 155 GVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 155 g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
..+ +.++.+.+.|+|.+.++| +.+++..++.+.+++. ++.+-+-...+.--.-...++....|..++-+..
T Consensus 167 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv 246 (337)
T 3ble_A 167 SPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASI 246 (337)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBG
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCCCEEEEec
Confidence 333 455667889999999998 4567777777776653 3443333333332233333444456776774333
Q ss_pred CccCCCCCCCchHHHHHHHHhhc
Q 021527 226 GVTGARASISGHVQTLLREIKES 248 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~ 248 (311)
+.-|.+++. ..+++++.-++..
T Consensus 247 ~GlG~~aGN-~~~E~lv~~L~~~ 268 (337)
T 3ble_A 247 NGLGERAGN-TPLEALVTTIHDK 268 (337)
T ss_dssp GGCSSTTCB-CBHHHHHHHHHHH
T ss_pred ccccccccc-hhHHHHHHHHHHh
Confidence 334555443 3456666666554
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.78 Score=43.64 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=90.5
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHC-CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCC
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSC-GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSC 140 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~-GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~i 140 (311)
.+-.|.+.|..+.+...+.++.+.+. |...+-+-+-.. +.++-++.++.+|+. .++
T Consensus 156 ~v~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~---------------------~~~~d~~~v~avR~a~G~~~ 214 (383)
T 3toy_A 156 PIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHG---------------------DLATDEAMIKGLRALLGPDI 214 (383)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSS---------------------CHHHHHHHHHHHHHHHCTTS
T ss_pred ceEEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCC---------------------CHHHHHHHHHHHHHHhCCCC
Confidence 35568888888889999999999888 999988843111 123335677777775 356
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
++.+-. |.- +..+++.++.+.+.++|+..+- .
T Consensus 215 ~l~vDa--N~~------------------------~~~~~A~~~~~~l~~~~i~~iE--e-------------------- 246 (383)
T 3toy_A 215 ALMLDF--NQS------------------------LDPAEATRRIARLADYDLTWIE--E-------------------- 246 (383)
T ss_dssp EEEEEC--TTC------------------------SCHHHHHHHHHHHGGGCCSEEE--C--------------------
T ss_pred eEEEeC--CCC------------------------CCHHHHHHHHHHHHhhCCCEEE--C--------------------
Confidence 666542 311 1235566666667777765441 1
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
.++++..+.++++++.+++||+.|-.+.++++++++++.| +|.+.+-
T Consensus 247 ------------P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik 294 (383)
T 3toy_A 247 ------------PVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPD 294 (383)
T ss_dssp ------------CSCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCC
T ss_pred ------------CCCcchHHHHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 1122223557888888899999999999999999998766 6877553
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=93.59 E-value=2.1 Score=39.04 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=52.2
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
.||..+| .-.|..+.+++++.++..++.|+|.+-+--||-.+. +-+.+++..++|.+.++
T Consensus 67 ~gr~pvi--aGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~------------------s~~~l~~~f~~ia~a~~ 126 (289)
T 2yxg_A 67 NGRVQVI--AGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKP------------------TQEGLRKHFGKVAESIN 126 (289)
T ss_dssp TTSSEEE--EECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCC------------------CHHHHHHHHHHHHHHCS
T ss_pred CCCCcEE--EeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC------------------CHHHHHHHHHHHHHhcC
Confidence 3454444 556888999999999999999999999998884331 22355667777777789
Q ss_pred CcEEEEecCcch
Q 021527 140 CPIALFTYYNPI 151 (311)
Q Consensus 140 iPiilm~Y~n~i 151 (311)
+|+++ |-+|-
T Consensus 127 lPiil--Yn~P~ 136 (289)
T 2yxg_A 127 LPIVL--YNVPS 136 (289)
T ss_dssp SCEEE--EECHH
T ss_pred CCEEE--EeCcc
Confidence 99887 55554
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.58 E-value=4.3 Score=37.09 Aligned_cols=176 Identities=19% Similarity=0.249 Sum_probs=109.6
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
.|||. ++.+...+++|||.|=+= |--|=--||. +.+..+++.+++|+-+-++.+
T Consensus 51 ~~PDp---v~aA~~ae~aGAdGITvH-----lReDrRHI~d----------------~Dv~~L~~~i~t~lNlEma~t-- 104 (278)
T 3gk0_A 51 AYPDP---VRAALAAEDAGADAITLH-----LREDRRHIVD----------------ADVRTLRPRVKTRMNLECAVT-- 104 (278)
T ss_dssp SCSCH---HHHHHHHHHTTCSEEEEE-----CCTTCSSSCH----------------HHHHHHHHHCSSCEEEEECSS--
T ss_pred CCCCH---HHHHHHHHHcCCCEEEec-----cCCCcccCCH----------------HHHHHHHHHcCCCEEeecCCC--
Confidence 47765 566667788999997773 2223222332 245555666678888877643
Q ss_pred hccCHHHHHHHHHHcCCcEE-EecCCCh--------------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGL-VVPDVPL--------------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGv-iipDlp~--------------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++|++.+.+.--+-+ ++||-+- +....+.+.+++.||.+.+|+.|. .+.++...+...
T Consensus 105 -----~emi~ial~~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDpd--~~qI~aA~~~GA 177 (278)
T 3gk0_A 105 -----PEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPD--EAQIRAAHETGA 177 (278)
T ss_dssp -----HHHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHHTC
T ss_pred -----HHHHHHHHHcCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCc
Confidence 789999988877655 5566431 235667888999999999999886 455655444343
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhc------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKES------STKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
. ++.-.+|...... ......+.++++++. .++-|-+|-|++ -+++..+... +-.-+-||-+|+-
T Consensus 178 d--~IELhTG~YA~a~-~~~~~~~el~rl~~aA~~A~~lGL~VnAGHGL~-y~Nv~~ia~ip~i~ElnIGHaiIa 248 (278)
T 3gk0_A 178 P--VIELHTGRYADAH-DAAEQQREFERIATGVDAGIALGLKVNAGHGLH-YTNVQAIAALPGIAELNIGHAIVA 248 (278)
T ss_dssp S--EEEECCHHHHTCS-SHHHHHHHHHHHHHHHHHHHHTTCEEEECTTCC-TTTHHHHHTCTTEEEEEECHHHHH
T ss_pred C--EEEEecchhhccC-CchhHHHHHHHHHHHHHHHHHcCCEEecCCCCC-HHHHHHHHhCCCCeEEecCHHHHH
Confidence 4 4333323222211 112233345555442 368899999997 5888776532 2578899988765
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=93.57 E-value=1.7 Score=37.81 Aligned_cols=110 Identities=11% Similarity=0.138 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC---------CCChHHHHHHHHHhCCceEEEEecCC
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT---------PTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis---------p~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
..+.++.+.+.|++++.+. .++....++ +..++.++-++. -+.+.++++...+..-.++.+...
T Consensus 38 ~~~~a~~~~~~G~~~i~~~--~~~~i~~i~---~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~-- 110 (234)
T 1yxy_A 38 MPLMAKAAQEAGAVGIRAN--SVRDIKEIQ---AITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCT-- 110 (234)
T ss_dssp HHHHHHHHHHHTCSEEEEE--SHHHHHHHH---TTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECC--
T ss_pred HHHHHHHHHHCCCcEeecC--CHHHHHHHH---HhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEccc--
Confidence 3578888999999998874 223322222 223554432110 112356666655543344433211
Q ss_pred ccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 227 VTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
..+. .....+.+.++++|+.. +.+ ++.++++++++..+.+.|+|.+
T Consensus 111 ~~~~--~~~~~~~~~i~~i~~~~~~~~--v~~~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 111 KRDR--HDGLDIASFIRQVKEKYPNQL--LMADISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp SSCC--TTCCCHHHHHHHHHHHCTTCE--EEEECSSHHHHHHHHHTTCSEE
T ss_pred ccCC--CCCccHHHHHHHHHHhCCCCe--EEEeCCCHHHHHHHHHcCCCEE
Confidence 1110 00124568899998876 444 5568899999999999999998
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.83 Score=43.00 Aligned_cols=132 Identities=10% Similarity=0.106 Sum_probs=0.0
Q ss_pred CccEEEEEeCCC-CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-C
Q 021527 62 KVALIPYITAGD-PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-S 139 (311)
Q Consensus 62 ~~~li~yi~~G~-P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~ 139 (311)
+..+..+.+.|. ++.+.+.+.++.+.+.|.+.+.+-+ +|-.| ++.++.+|+.+ +
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~---~~~~d---------------------~~~v~avr~a~~~ 189 (375)
T 1r0m_A 134 KEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKI---KPGWD---------------------VQPVRATREAFPD 189 (375)
T ss_dssp CSEEEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEEC---BTTBS---------------------HHHHHHHHHHCTT
T ss_pred CCceeeeEEecCCCCHHHHHHHHHHHHHhcccEEEEec---ChHHH---------------------HHHHHHHHHHcCC
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+++.+-... -+..++ .++.+.++++|+..|=
T Consensus 190 ~~l~vDan~--------------------------~~~~~~-~~~~~~l~~~~i~~iE---------------------- 220 (375)
T 1r0m_A 190 IRLTVDANS--------------------------AYTLAD-AGRLRQLDEYDLTYIE---------------------- 220 (375)
T ss_dssp SCEEEECTT--------------------------CCCGGG-HHHHHTTGGGCCSCEE----------------------
T ss_pred CeEEEeCCC--------------------------CCCHHH-HHHHHHHHhCCCcEEE----------------------
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEE
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIV 278 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIV 278 (311)
..++++..+.++++++.+++||+.|-.+.++++++++++.| +|.+.+
T Consensus 221 ------------qP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 268 (375)
T 1r0m_A 221 ------------QPLAWDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINL 268 (375)
T ss_dssp ------------CCSCTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEE
T ss_pred ------------CCCCcccHHHHHHHHHhCCCCEEecCccCCHHHHHHHHHhCCCCEEEE
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=93.56 E-value=1.4 Score=40.16 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=52.6
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
.||..+|. -.|..+.+++++.++..++.|+|.+-+--||-.+. +-+.+++..++|.+.++
T Consensus 68 ~gr~pvia--Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~------------------~~~~l~~~f~~ia~a~~ 127 (291)
T 3tak_A 68 NKRIPIIA--GTGANSTREAIELTKAAKDLGADAALLVTPYYNKP------------------TQEGLYQHYKAIAEAVE 127 (291)
T ss_dssp TTSSCEEE--ECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCC------------------CHHHHHHHHHHHHHHCC
T ss_pred CCCCeEEE--eCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCC------------------CHHHHHHHHHHHHHhcC
Confidence 35555544 56889999999999999999999999998884321 22345667778877789
Q ss_pred CcEEEEecCcch
Q 021527 140 CPIALFTYYNPI 151 (311)
Q Consensus 140 iPiilm~Y~n~i 151 (311)
+|+++ |-+|-
T Consensus 128 lPiil--Yn~P~ 137 (291)
T 3tak_A 128 LPLIL--YNVPG 137 (291)
T ss_dssp SCEEE--EECHH
T ss_pred CCEEE--Eeccc
Confidence 99987 55554
|
| >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A | Back alignment and structure |
|---|
Probab=93.56 E-value=1.1 Score=33.88 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=59.9
Q ss_pred EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC
Q 021527 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST 250 (311)
Q Consensus 171 viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~ 250 (311)
+++.|=.......+...++..|..... + .+..+-++.+.+.....+.+ ... ..| .+..++++++|+..+
T Consensus 5 ilivdd~~~~~~~l~~~L~~~g~~v~~-~--~~~~~al~~~~~~~~dlii~-D~~-~p~------~~g~~~~~~lr~~~~ 73 (120)
T 3f6p_A 5 ILVVDDEKPIADILEFNLRKEGYEVHC-A--HDGNEAVEMVEELQPDLILL-DIM-LPN------KDGVEVCREVRKKYD 73 (120)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEE-E--SSHHHHHHHHHTTCCSEEEE-ETT-STT------THHHHHHHHHHTTCC
T ss_pred EEEEECCHHHHHHHHHHHHhCCEEEEE-e--CCHHHHHHHHhhCCCCEEEE-eCC-CCC------CCHHHHHHHHHhcCC
Confidence 344433333455567777888876432 2 34455555554433344433 211 111 123578888988778
Q ss_pred CcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 251 KPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 251 ~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.|+++=.+-.+.+...+..+.||++++.
T Consensus 74 ~~ii~~t~~~~~~~~~~~~~~ga~~~l~ 101 (120)
T 3f6p_A 74 MPIIMLTAKDSEIDKVIGLEIGADDYVT 101 (120)
T ss_dssp SCEEEEEESSCHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCChHHHHHHHhCCcceeEc
Confidence 8988877777888888999999999965
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.21 Score=43.41 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=52.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++...+.|+|+|-+|.-|..+...|. ... .++.++++++..++|++..|=.| .+-
T Consensus 120 ~~~~~~a~~~gaD~i~~~~~f~~~~~~g~-----------~~~----~~~~l~~~~~~~~~pvia~GGI~-------~~n 177 (221)
T 1yad_A 120 LEEAVQAEKEDADYVLFGHVFETDCKKGL-----------EGR----GVSLLSDIKQRISIPVIAIGGMT-------PDR 177 (221)
T ss_dssp HHHHHHHHHTTCSEEEEECCC---------------------C----HHHHHHHHHHHCCSCEEEESSCC-------GGG
T ss_pred HHHHHHHHhCCCCEEEECCccccCCCCCC-----------CCC----CHHHHHHHHHhCCCCEEEECCCC-------HHH
Confidence 35566777899999999855533222221 011 13567777766789999987444 234
Q ss_pred HHHHHHcCCcEEEecCC------ChhhHHHHHHHHHHc
Q 021527 160 MSTVRDIGIRGLVVPDV------PLEETESLQKEAMKN 191 (311)
Q Consensus 160 i~~~~~aGadGviipDl------p~ee~~~~~~~~~~~ 191 (311)
+..+.++|++|+.+... |.+...++++.+++.
T Consensus 178 v~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~ 215 (221)
T 1yad_A 178 LRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKEM 215 (221)
T ss_dssp HHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEhHHhhCCCCHHHHHHHHHHHHHHh
Confidence 55677799999988421 223345555555543
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.54 Score=44.16 Aligned_cols=138 Identities=12% Similarity=0.089 Sum_probs=92.0
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCc
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCP 141 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iP 141 (311)
.+-.|.+.|..+.+...+.++.+.+.|.+.+-+-+- .+.++-++.++.+|+.+ +++
T Consensus 129 ~v~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G----------------------~~~~~d~~~v~avR~~~g~~~~ 186 (356)
T 3ro6_B 129 SLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLC----------------------GDEEQDFERLRRLHETLAGRAV 186 (356)
T ss_dssp CEEBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECC----------------------SCHHHHHHHHHHHHHHHTTSSE
T ss_pred ceeeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeC----------------------CCHHHHHHHHHHHHHHhCCCCE
Confidence 344577777777889999999999999999888532 12233456777777753 566
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+.+-. |.- +..+++.++.+.++++|+..+- .|
T Consensus 187 l~vDa--n~~------------------------~~~~~a~~~~~~l~~~~i~~iE--qP-------------------- 218 (356)
T 3ro6_B 187 VRVDP--NQS------------------------YDRDGLLRLDRLVQELGIEFIE--QP-------------------- 218 (356)
T ss_dssp EEEEC--TTC------------------------CCHHHHHHHHHHHHHTTCCCEE--CC--------------------
T ss_pred EEEeC--CCC------------------------CCHHHHHHHHHHHHhcCCCEEE--CC--------------------
Confidence 66642 311 1234566666777777766551 11
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC--CcEEEEhhHhh
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG--ADGVIVGSAMV 283 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G--ADGvIVGSaiv 283 (311)
++++..+.++++++.+++||+.|--+.+++++.++++.| +|.+.+--.-.
T Consensus 219 ------------~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~~ 270 (356)
T 3ro6_B 219 ------------FPAGRTDWLRALPKAIRRRIAADESLLGPADAFALAAPPAACGIFNIKLMKC 270 (356)
T ss_dssp ------------SCTTCHHHHHTSCHHHHHTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHHH
T ss_pred ------------CCCCcHHHHHHHHhcCCCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEccccc
Confidence 111123457777777789999999999999999999854 89998854433
|
| >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=3.8 Score=36.34 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=88.4
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecC
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~ 148 (311)
..|.++.+...+.++.+.+.|+|++|+=+=|-+.. +.+++.+.++.+|+.. ++|+++ ++-
T Consensus 10 i~~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~------------------~~~~v~~~~~~lr~~~~~~PiI~-T~R 70 (238)
T 1sfl_A 10 ITPQLSIEETLIQKINHRIDAIDVLELRIDQFENV------------------TVDQVAEMITKLKVMQDSFKLLV-TYR 70 (238)
T ss_dssp ECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTC------------------CHHHHHHHHHHHC---CCSEEEE-ECC
T ss_pred ecCCCCHHHHHHHHHHhhhcCCCEEEEEecccccC------------------CHHHHHHHHHHHHHhccCCCEEE-Eee
Confidence 44546778888888888899999999965442211 2234556788888776 789866 432
Q ss_pred c----chhccCHHHHH---HHHHHc-CCcEEEecCC----ChhhHHHHHHHHHHcCCCeEEEe-----CCCChHHHHHHH
Q 021527 149 N----PILKRGVDNFM---STVRDI-GIRGLVVPDV----PLEETESLQKEAMKNKIELVLFT-----TPTTPTDRMKAI 211 (311)
Q Consensus 149 n----~i~~~g~~~fi---~~~~~a-GadGviipDl----p~ee~~~~~~~~~~~gi~~I~li-----sp~t~~eri~~i 211 (311)
. ..+....+.++ +.+.+. ++|-+ -.++ +.+...++.+.+++.|.++|.-. +|. .++....+
T Consensus 71 ~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~i-DvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~-~~el~~~~ 148 (238)
T 1sfl_A 71 TKLQGGYGQFTNDSYLNLISDLANINGIDMI-DIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPP-LDELQFIF 148 (238)
T ss_dssp BGGGTSCBCCCHHHHHHHHHHGGGCTTCCEE-EEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCC-HHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHhCCCCEE-EEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcC-HHHHHHHH
Confidence 1 11222233343 444544 46654 3333 33335567777788888766432 232 13333333
Q ss_pred HHh-CCc-eEEEEecCCccCCCCCCCchHHHHHH---HHhhcCCCcEEEeeCCCCHHHHHHHHHc
Q 021527 212 VEA-SEG-FVYLVSSIGVTGARASISGHVQTLLR---EIKESSTKPVAVGFGISKPEHVQQVAGW 271 (311)
Q Consensus 212 ~~~-a~g-fiY~vs~~G~TG~~~~~~~~~~~~l~---~vk~~~~~Pv~vGfGIst~e~v~~v~~~ 271 (311)
.+. ..| -++-+..+.. ...++..+++ ++++..+.|+ +++.-...-.+.+++..
T Consensus 149 ~~~~~~gaDivKia~~a~------~~~D~l~ll~~~~~~~~~~~~P~-I~~~MG~~G~~SRi~~~ 206 (238)
T 1sfl_A 149 FKMQKFNPEYVKLAVMPH------NKNDVLNLLQAMSTFSDTMDCKV-VGISMSKLGLISRTAQG 206 (238)
T ss_dssp HHHHTTCCSEEEEEECCS------SHHHHHHHHHHHHHHHHHCSSEE-EEEECTGGGHHHHHTGG
T ss_pred HHHHHcCCCEEEEEecCC------CHHHHHHHHHHHHHHhhcCCCCE-EEEECCCCchHHHHHHH
Confidence 322 345 3444443321 1233444443 3433467896 44444333457777654
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.97 Score=42.95 Aligned_cols=135 Identities=16% Similarity=0.060 Sum_probs=0.0
Q ss_pred CccEEEEEe-C--CCC-------ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc------CC---
Q 021527 62 KVALIPYIT-A--GDP-------DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR------GT--- 122 (311)
Q Consensus 62 ~~~li~yi~-~--G~P-------~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~------G~--- 122 (311)
+..+=.|-+ . |.. +.+.+.+.++.+.+.|.+.+++- . |.
T Consensus 123 ~~~vp~y~~~i~~g~~~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik----------------------~~~~~~~G~~~~ 180 (403)
T 2ox4_A 123 REDLRVYASQLQFGWGKERKSKGRKEEYAEEALKAVAEGYDAVKVD----------------------VLAHDRNGSREG 180 (403)
T ss_dssp SSSEEEEEECGGGCSSSSCCCCCSHHHHHHHHHHHHHTTCSEEEEC----------------------CSSSCTTSCCTT
T ss_pred CCceeeeEeeccCCccccccccCCHHHHHHHHHHHHHcCCCEEEEe----------------------ccccCCcccccc
Q ss_pred ----------CHHHHHHHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHH
Q 021527 123 ----------NFNAILSMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK 190 (311)
Q Consensus 123 ----------~~~~~~~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~ 190 (311)
+++...+.++.+|+.+ ++++.+ .++ .-+..+++.++.+.+.+
T Consensus 181 s~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~v----------------------Dan----~~~~~~~ai~~~~~l~~ 234 (403)
T 2ox4_A 181 VFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIV----------------------ENH----GHTDLVSAIQFAKAIEE 234 (403)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEE----------------------ECT----TCSCHHHHHHHHHHHGG
T ss_pred CcccCCCchHHHHHHHHHHHHHHHHhCCCCeEEE----------------------ECC----CCCCHHHHHHHHHHHHh
Q ss_pred cCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH
Q 021527 191 NKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG 270 (311)
Q Consensus 191 ~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~ 270 (311)
+|+..+- ..++++..+.++++++.+++||+.|-.+.++++++++++
T Consensus 235 ~~i~~iE----------------------------------~P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~ 280 (403)
T 2ox4_A 235 FNIFFYE----------------------------------EINTPLNPRLLKEAKKKIDIPLASGERIYSRWGFLPFLE 280 (403)
T ss_dssp GCEEEEE----------------------------------CCSCTTSTHHHHHHHHTCCSCEEECTTCCHHHHHHHHHH
T ss_pred hCCCEEe----------------------------------CCCChhhHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHH
Q ss_pred cC-CcEEEE
Q 021527 271 WG-ADGVIV 278 (311)
Q Consensus 271 ~G-ADGvIV 278 (311)
.| +|.+.+
T Consensus 281 ~~~~d~v~i 289 (403)
T 2ox4_A 281 DRSIDVIQP 289 (403)
T ss_dssp TTCCSEECC
T ss_pred cCCCCEEec
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=2.9 Score=38.15 Aligned_cols=154 Identities=9% Similarity=0.069 Sum_probs=82.1
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH----hhccCCCcEE--EE-ecCcch-
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE----VVPQMSCPIA--LF-TYYNPI- 151 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~----ir~~~~iPii--lm-~Y~n~i- 151 (311)
.+.++.+.++|+|.+.+-.+-||. . ++ + ..+.+.++.++.+.+ .++ ...++. ++ ++..+.
T Consensus 83 ~~~i~~a~~ag~~~v~i~~~~sd~----~-~~----~--~~~~~~~e~l~~~~~~i~~a~~-~G~~v~~~l~~~~~~~~~ 150 (298)
T 2cw6_A 83 LKGFEAAVAAGAKEVVIFGAASEL----F-TK----K--NINCSIEESFQRFDAILKAAQS-ANISVRGYVSCALGCPYE 150 (298)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCHH----H-HH----H--HHSCCHHHHHHHHHHHHHHHHH-TTCEEEEEEETTTCBTTT
T ss_pred HHhHHHHHHCCCCEEEEEecCCHH----H-HH----H--HhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEEEeeCCcC
Confidence 456788888999999997665542 1 11 1 123455555544444 343 344443 32 121111
Q ss_pred hccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 152 LKRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 152 ~~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.++.. .++++.+.+.|++.+.++| +.+++..++.+.+++. ++.+-+-...+.--.-...++....|..++-
T Consensus 151 ~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd 230 (298)
T 2cw6_A 151 GKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVD 230 (298)
T ss_dssp BSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEE
Confidence 11223 3466677899999999987 4567777777776653 2333344444433222333444456776663
Q ss_pred -ecCCccCC------CCCCCchHHHHHHHHhh
Q 021527 223 -SSIGVTGA------RASISGHVQTLLREIKE 247 (311)
Q Consensus 223 -s~~G~TG~------~~~~~~~~~~~l~~vk~ 247 (311)
+..| -|. +.+ +..+++++.-++.
T Consensus 231 ~tv~G-lG~cp~a~g~aG-N~~~E~lv~~l~~ 260 (298)
T 2cw6_A 231 SSVAG-LGGCPYAQGASG-NLATEDLVYMLEG 260 (298)
T ss_dssp EBTTS-CCCCTTSCSSCC-BCBHHHHHHHHHH
T ss_pred eeccc-ccCCCCCCCCcC-ChhHHHHHHHHHh
Confidence 4444 343 333 2335555655554
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.62 Score=43.50 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCC-----CChhhHHHHHHHHHHCCCCEEEEcCCCCCC--CCChHHHHHHHHHHHHcCC
Q 021527 50 LAETFTRLKKQGKVALIPYITAGD-----PDLSTTAEALKLLDSCGSDIIELGVPYSDP--LADGPVIQAAATRSLARGT 122 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~-----P~~~~~~e~~~~L~~~GaD~IElG~PfsDP--~aDGp~Iq~a~~~Al~~G~ 122 (311)
+.+.++.+++.-...+..=+.+.+ -+.+.+.++++.|++.|+|.|++.....++ ...+| +.
T Consensus 197 ~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~------------~~ 264 (338)
T 1z41_A 197 LREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFP------------GY 264 (338)
T ss_dssp HHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCT------------TT
T ss_pred HHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCc------------cc
Confidence 456666666553445666666643 245789999999999999999996543221 01111 12
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcC-CcEEEec
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIG-IRGLVVP 174 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG-adGviip 174 (311)
+ ++.++++|+.+++||+..+-.+ . .+.++.+.+.| +|+|.+.
T Consensus 265 ~----~~~~~~ir~~~~iPVi~~Ggi~-----s-~~~a~~~l~~G~aD~V~iG 307 (338)
T 1z41_A 265 Q----VSFAEKIREQADMATGAVGMIT-----D-GSMAEEILQNGRADLIFIG 307 (338)
T ss_dssp T----HHHHHHHHHHHCCEEEECSSCC-----S-HHHHHHHHHTTSCSEEEEC
T ss_pred h----HHHHHHHHHHCCCCEEEECCCC-----C-HHHHHHHHHcCCceEEeec
Confidence 2 3577788888899999876432 1 23455566666 9999883
|
| >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.19 Score=40.99 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=28.3
Q ss_pred HHHHHHHHhhc-C-CCcEEEeeCC-CCHHH----HHHHHHcCCcEEE-Ehh
Q 021527 238 VQTLLREIKES-S-TKPVAVGFGI-SKPEH----VQQVAGWGADGVI-VGS 280 (311)
Q Consensus 238 ~~~~l~~vk~~-~-~~Pv~vGfGI-st~e~----v~~v~~~GADGvI-VGS 280 (311)
+.++++.+|+. . +++|++|+.. ..+++ ...+.+.|+|+++ -||
T Consensus 71 ~~~~i~~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~ 121 (137)
T 1ccw_A 71 CKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGT 121 (137)
T ss_dssp HTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTC
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCC
Confidence 44567777664 3 6899999874 22222 4558889999996 344
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=93.47 E-value=1.8 Score=41.04 Aligned_cols=137 Identities=15% Similarity=0.257 Sum_probs=88.7
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iP 141 (311)
..+-.|.+.|.++.+...+.++.+.+.|...+-+-+-.. ..++-++.++.+|+.+ +++
T Consensus 136 ~~v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------------~~~~d~~~v~avR~a~~~~~ 194 (385)
T 3i6e_A 136 DTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFR---------------------DHAFDIMRLELIARDFPEFR 194 (385)
T ss_dssp SEEEBEEEECCSSHHHHHHHHHHHHHHTCCEEEEECSSS---------------------CHHHHHHHHHHHHHHCTTSE
T ss_pred CceEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------------CHHHHHHHHHHHHHhCCCCe
Confidence 345557777778888888888888888999988853221 1223345677777664 455
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+.+- .|.- +..+++.++.+.++++|+..+= .|
T Consensus 195 l~vD--an~~------------------------~~~~~A~~~~~~L~~~~i~~iE--qP-------------------- 226 (385)
T 3i6e_A 195 VRVD--YNQG------------------------LEIDEAVPRVLDVAQFQPDFIE--QP-------------------- 226 (385)
T ss_dssp EEEE--CTTC------------------------CCGGGHHHHHHHHHTTCCSCEE--CC--------------------
T ss_pred EEEE--CCCC------------------------CCHHHHHHHHHHHHhcCCCEEE--CC--------------------
Confidence 5553 2311 1235566666677777765441 11
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhh
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGS 280 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGS 280 (311)
++++..+.++++++.+++||+.|--+.+++++.++++.| +|.+.+--
T Consensus 227 ------------~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~ 274 (385)
T 3i6e_A 227 ------------VRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKI 274 (385)
T ss_dssp ------------SCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred ------------CCcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecc
Confidence 122223567888888889999999999999999888655 68887743
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.063 Score=47.54 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCCcEEEeeCCCC------HHHHHHHHHcCCcEEEEhh
Q 021527 238 VQTLLREIKESSTKPVAVGFGISK------PEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~vGfGIst------~e~v~~v~~~GADGvIVGS 280 (311)
..+.++++|+.+++||.++.+++. .+.++.+.+.|||++++++
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~ 116 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVD 116 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECC
Confidence 457899999999999988877764 4899999999999999996
|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.3 Score=43.23 Aligned_cols=38 Identities=18% Similarity=0.521 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.++++++++. +++|. -+.++++++++++.++|+||++.
T Consensus 197 ~~~v~~~~~~-G~~v~-~wTvn~~~~~~~l~~~GvdgI~T 234 (247)
T 2otd_A 197 KARVMQLKDA-GLRIL-VYTVNKPQHAAELLRWGVDCICT 234 (247)
T ss_dssp HHHHHHHHHT-TCEEE-EECCCCHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHC-CCEEE-EEccCCHHHHHHHHHcCCCEEEe
Confidence 3567777664 67774 57799999999999999999975
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.52 Score=44.41 Aligned_cols=92 Identities=20% Similarity=0.139 Sum_probs=64.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.++..+.++.|++.|+++||= |+... + ++..+++++++++||..-....
T Consensus 203 ~~~~a~~~~~~l~~~~i~~iEq------P~~~~---------------d----~~~~~~l~~~~~iPI~~dE~~~----- 252 (371)
T 2ovl_A 203 TVDGAIRAARALAPFDLHWIEE------PTIPD---------------D----LVGNARIVRESGHTIAGGENLH----- 252 (371)
T ss_dssp CHHHHHHHHHHHGGGCCSEEEC------CSCTT---------------C----HHHHHHHHHHHCSCEEECTTCC-----
T ss_pred CHHHHHHHHHHHHhcCCCEEEC------CCCcc---------------c----HHHHHHHHhhCCCCEEeCCCCC-----
Confidence 4678889999999999999983 32210 1 2456677777889998865332
Q ss_pred CHHHHHHHHHHcCCcEEEecCCC----hhhHHHHHHHHHHcCCCeEE
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVP----LEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp----~ee~~~~~~~~~~~gi~~I~ 197 (311)
+.++|.+.+.+-.+|.+ .+|+. +.+..++...++++|+...+
T Consensus 253 ~~~~~~~~i~~~~~d~v-~ik~~~~GGi~~~~~i~~~A~~~gi~~~~ 298 (371)
T 2ovl_A 253 TLYDFHNAVRAGSLTLP-EPDVSNIGGYTTFRKVAALAEANNMLLTS 298 (371)
T ss_dssp SHHHHHHHHHHTCCSEE-CCCTTTTTSHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHcCCCCEE-eeCccccCCHHHHHHHHHHHHHcCCeEcc
Confidence 34556655555557775 56543 56788899999999998665
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.96 Score=42.40 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=79.9
Q ss_pred EEEEEeCCC-CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcE
Q 021527 65 LIPYITAGD-PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPI 142 (311)
Q Consensus 65 li~yi~~G~-P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPi 142 (311)
+..+.+.|. .+.+.+.+.++.+.+.|.+.+.+-+ +|-.| ++.++.+|+.+ ++++
T Consensus 130 ~~~~~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~---~~~~d---------------------~~~v~avr~a~~~~~l 185 (369)
T 2zc8_A 130 VEVGVSLGIQPSVEDTLRVVERHLEEGYRRIKLKI---KPGWD---------------------YEVLKAVREAFPEATL 185 (369)
T ss_dssp EEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEEC---BTTBS---------------------HHHHHHHHHHCTTSCE
T ss_pred eeceEEecCCCCHHHHHHHHHHHHHhhhheeeeec---ChhHH---------------------HHHHHHHHHHcCCCeE
Confidence 444444454 5678888888888899999999853 22111 23455555543 4565
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-. |.- +..++ .++.+.++++|+..+= .|
T Consensus 186 ~vDa--n~~------------------------~~~~~-~~~~~~l~~~~i~~iE--qP--------------------- 215 (369)
T 2zc8_A 186 TADA--NSA------------------------YSLAN-LAQLKRLDELRLDYIE--QP--------------------- 215 (369)
T ss_dssp EEEC--TTC------------------------CCGGG-HHHHHGGGGGCCSCEE--CC---------------------
T ss_pred EEec--CCC------------------------CCHHH-HHHHHHHHhCCCcEEE--CC---------------------
Confidence 5532 211 12244 4555555666655432 11
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEE
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIV 278 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIV 278 (311)
++++..+.++++++.+++||+.|--+.++++++++++.| +|.+.+
T Consensus 216 -----------~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 261 (369)
T 2zc8_A 216 -----------LAYDDLLDHAKLQRELSTPICLDESLTGAEKARKAIELGAGRVFNV 261 (369)
T ss_dssp -----------SCTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred -----------CCcccHHHHHHHHhhCCCCEEEcCccCCHHHHHHHHHhCCCCEEEE
Confidence 111112457777777889999999999999999998766 788877
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=1.8 Score=41.12 Aligned_cols=139 Identities=14% Similarity=0.154 Sum_probs=88.2
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~i 140 (311)
..+-.|.+.|.-+.+...+.++.+.+.|...+-+-+- .+.++-++.++.+|+.+ ++
T Consensus 130 ~~v~~y~t~g~~~~e~~~~~a~~~~~~Gf~~~KlK~g----------------------~~~~~d~~~v~avR~a~g~~~ 187 (379)
T 3r0u_A 130 NSIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTG----------------------ADFNRDIQLLKALDNEFSKNI 187 (379)
T ss_dssp CEEEBCEEECCCCHHHHHHHHHHHHHTTCCEEEEECS----------------------SCHHHHHHHHHHHHHHCCTTS
T ss_pred CeEEEEEEecCCCHHHHHHHHHHHHHcCCCEEeeecC----------------------CCHHHHHHHHHHHHHhcCCCC
Confidence 3455677777777788888899888899999888431 12233456777888764 45
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
++.+.. |.- +..+++.++.+.+++++..+-++=.|
T Consensus 188 ~L~vDa--N~~------------------------w~~~~A~~~~~~l~~~~~~l~~iEeP------------------- 222 (379)
T 3r0u_A 188 KFRFDA--NQG------------------------WNLAQTKQFIEEINKYSLNVEIIEQP------------------- 222 (379)
T ss_dssp EEEEEC--TTC------------------------CCHHHHHHHHHHHHTSCCCEEEEECC-------------------
T ss_pred eEEEeC--CCC------------------------cCHHHHHHHHHHHhhcCCCcEEEECC-------------------
Confidence 665532 311 12345555555555522221111111
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhH
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSA 281 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSa 281 (311)
++++..+.++++++.+++||+.|--+.++.++.++++.| +|.+.+--.
T Consensus 223 -------------~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~ 271 (379)
T 3r0u_A 223 -------------VKYYDIKAMAEITKFSNIPVVADESVFDAKDAERVIDEQACNMINIKLA 271 (379)
T ss_dssp -------------SCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHH
T ss_pred -------------CCcccHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEECcc
Confidence 122223567788888899999999999999999998866 688877433
|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.39 Score=42.78 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.++++++++. +++| .-+.++++++++++.++|+||++.
T Consensus 201 ~~~v~~~~~~-G~~v-~~wTvn~~~~~~~l~~~GvdgIiT 238 (252)
T 2pz0_A 201 PELVEGCKKN-GVKL-FPWTVDRKEDMERMIKAGVDGIIT 238 (252)
T ss_dssp HHHHHHHHHT-TCEE-CCBCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHC-CCEE-EEECCCCHHHHHHHHHcCCCEEEc
Confidence 4677777664 6777 446799999999999999999975
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.33 E-value=1.6 Score=40.45 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=52.8
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
.+|..+|. -.|..+.+++++.++..++.|+|.+-+--||-.+. +-+.+++..++|.+.++
T Consensus 91 ~grvpVia--Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~------------------s~~~l~~~f~~va~a~~ 150 (315)
T 3na8_A 91 AHRVPTIV--SVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKL------------------NEAEVFQHYRAVGEAIG 150 (315)
T ss_dssp TTSSCBEE--ECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCC------------------CHHHHHHHHHHHHHHCS
T ss_pred CCCCcEEE--ecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC------------------CHHHHHHHHHHHHHhCC
Confidence 35555544 56889999999999999999999999998884431 22355667778877788
Q ss_pred CcEEEEecCcch
Q 021527 140 CPIALFTYYNPI 151 (311)
Q Consensus 140 iPiilm~Y~n~i 151 (311)
+||++ |-+|-
T Consensus 151 lPiil--Yn~P~ 160 (315)
T 3na8_A 151 VPVML--YNNPG 160 (315)
T ss_dssp SCEEE--EECHH
T ss_pred CcEEE--EeCcc
Confidence 99987 55554
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=1.1 Score=40.93 Aligned_cols=181 Identities=16% Similarity=0.156 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcC---------CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 76 LSTTAEALKLLDSCGSDIIELGV---------PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~---------PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
.+...+.++.+.++|+|.. +++ |-+.|+ . -.|..+++-++++++++++..+|++--.
T Consensus 28 ~e~a~~~a~~lk~~ga~~~-~~~v~k~~f~k~prts~~------------~-~~g~~l~~gl~~l~~~~~~~Gl~~~te~ 93 (280)
T 2qkf_A 28 LDSTLQTCAHYVEVTRKLG-IPYIFKASFDKANRSSIH------------S-YRGVGLEEGLKIFEKVKAEFGIPVITDV 93 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCEEEEEESCCSSCSSSS------------S-CCCSCHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred HHHHHHHHHHHHHhhhhcc-eeEEEeeeeecCCCCChH------------H-hhccchHHHHHHHHHHHHHcCCcEEEec
Confidence 4789999999999887754 331 222222 0 1234456778899999888999987732
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC--hHHH---HHHHHHhCCceEEE
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT--PTDR---MKAIVEASEGFVYL 221 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t--~~er---i~~i~~~a~gfiY~ 221 (311)
+++. -++.+.+. +|.+-++-.-..... +..++.+.| .+|.+-+.+. ..+. .+.+......-+.+
T Consensus 94 -~d~~-------~~~~l~~~-~d~~kIga~~~~n~~-ll~~~a~~~-kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L 162 (280)
T 2qkf_A 94 -HEPH-------QCQPVAEV-CDVIQLPAFLARQTD-LVVAMAKTG-NVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLIL 162 (280)
T ss_dssp -CSGG-------GHHHHHHH-CSEEEECGGGTTBHH-HHHHHHHTC-CEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEE
T ss_pred -CCHH-------HHHHHHhh-CCEEEECcccccCHH-HHHHHHcCC-CcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 2322 22333445 788888743223333 444555667 4566666553 3332 22222222222222
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEe---------------eCCC--CHHHHHHHHHcCCcEEEEhhHhh
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVG---------------FGIS--KPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vG---------------fGIs--t~e~v~~v~~~GADGvIVGSaiv 283 (311)
.-..+..+.. ....++ ..+..+|+.+ +.||++. .|-+ -+.-..+....||||++|=+-+.
T Consensus 163 ~~rg~~~~~~-~~~~dl-~~i~~lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~~ 240 (280)
T 2qkf_A 163 CERGSSFGYD-NLVVDM-LGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPD 240 (280)
T ss_dssp EECCEECSTT-CEECCT-THHHHHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC---
T ss_pred EECCCCCCCC-ccccCH-HHHHHHHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecCC
Confidence 2111111111 100122 3467788877 8998873 2300 02345566789999999988776
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.38 Score=44.32 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhh--------cCCCcEEEeeCCCCHHHHHHHHHcCCc
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKE--------SSTKPVAVGFGISKPEHVQQVAGWGAD 274 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~--------~~~~Pv~vGfGIst~e~v~~v~~~GAD 274 (311)
..|..|+=+.+|.++.. ...+++.-+.+.+|+ ..+++|-+.+||+|.+++.+++++|++
T Consensus 183 eaGADfVKTSTGf~~~g-AT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 183 NGNADFIKTSTGKVQIN-ATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp TTTCSEEECCCSCSSCC-CCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred HhCCCEEEeCCCCCCCC-CCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 45777777766654211 122334333333432 236899999999999999999999876
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.49 Score=43.87 Aligned_cols=92 Identities=10% Similarity=-0.016 Sum_probs=57.2
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC--CC---------CC--CChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY--SD---------PL--ADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf--sD---------P~--aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
..++.=+.++ -+.+++.++++.++++|+|.|.+..-. .+ +. .+|+.+.. ..++
T Consensus 212 ~Pv~vKi~~~-~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~-------------~~~~ 277 (336)
T 1f76_A 212 VPIAVKIAPD-LSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQL-------------KSTE 277 (336)
T ss_dssp CCEEEECCSC-CCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHH-------------HHHH
T ss_pred CceEEEecCC-CCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHH-------------HHHH
Confidence 4455545443 445678999999999999999995321 11 00 12332211 1246
Q ss_pred HHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 130 MLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 130 ~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
.++++++.+ ++||+.-|-.. . -+.+.++.++|+|+|-+.
T Consensus 278 ~i~~i~~~~~~~ipVi~~GGI~-----~-~~da~~~l~~GAd~V~ig 318 (336)
T 1f76_A 278 IIRRLSLELNGRLPIIGVGGID-----S-VIAAREKIAAGASLVQIY 318 (336)
T ss_dssp HHHHHHHHHTTSSCEEEESSCC-----S-HHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHhCCCCCEEEECCCC-----C-HHHHHHHHHCCCCEEEee
Confidence 777888776 89999876322 1 234555566899999875
|
| >3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.71 Score=42.87 Aligned_cols=195 Identities=17% Similarity=0.265 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCC---CC--CChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc----cC--CCcEEEE
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSD---PL--ADGPVIQAAATRSLARGTNFNAILSMLKEVVP----QM--SCPIALF 145 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsD---P~--aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~----~~--~iPiilm 145 (311)
+-+++.++...+.|+++||+++-|+. |+ .||..-. +.|--..+.++.++|+.++++.. +. ++=++++
T Consensus 36 vNTl~~~~~a~~~GAn~IE~DV~~~~dg~~v~~hhg~pcd--c~r~C~~~~~~~~~l~~lr~~ttpg~~k~~~~l~lv~~ 113 (302)
T 3rlg_A 36 VNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIPCD--CGRNCKKYENFNDFLKGLRSATTPGNSKYQEKLVLVVF 113 (302)
T ss_dssp CCSHHHHHHHHHTTCSEEEEEECBCTTSCBCBCCCCSSCC--TTCCSCCCCBHHHHHHHHHHHHSTTSTTCCTTCCEEEE
T ss_pred hhhHHHHHHHHHcCCCEEEEEEEECCCCCEEEEECCCCcc--hhccCCCCccHHHHHHHHHHhcCCCCCccccceEEEEE
Confidence 55678888889999999999998852 22 2441100 11111234577788888887753 11 2223333
Q ss_pred -e-----cCcchhccCHHHHHHH----HHH---cCCcEEEe---cCCCh-hhHHHHHHHHHHcCC----CeEEE-eCCCC
Q 021527 146 -T-----YYNPILKRGVDNFMST----VRD---IGIRGLVV---PDVPL-EETESLQKEAMKNKI----ELVLF-TTPTT 203 (311)
Q Consensus 146 -~-----Y~n~i~~~g~~~fi~~----~~~---aGadGvii---pDlp~-ee~~~~~~~~~~~gi----~~I~l-isp~t 203 (311)
. +-|..+..|. ++.+. +-+ .|..+=|+ |++.. +-..-+.+.++..|. +.+.+ .+-+.
T Consensus 114 DlK~~~l~~~~~~~aG~-~la~kLl~~~w~~g~~~~ra~vilsi~~~~~~~~l~gf~~~l~~~g~~~LldkvG~Dfs~n~ 192 (302)
T 3rlg_A 114 DLKTGSLYDNQANDAGK-KLAKNLLQHYWNNGNNGGRAYIVLSIPDLNHYPLIKGFKDQLTKDGHPELMDKVGHDFSGND 192 (302)
T ss_dssp EECGGGSCGGGHHHHHH-HHHHHHHHHTSGGGSSCCCCEEEEEESCGGGTHHHHHHHHHHHHTTCGGGGGGEEEEECSCC
T ss_pred EcCCCCCCHHHHHHhHH-HHHHHHHHHHHhcCCCCceeEEEEecCcchHHHHHHHHHHHHhhcCHHHHhhhcCccccCCC
Confidence 1 2233333333 23333 333 34444344 33321 123345566667773 44433 33333
Q ss_pred hHHHHHHHHHhC--CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC---CcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 204 PTDRMKAIVEAS--EGFVYLVSSIGVTGARASISGHVQTLLREIKESST---KPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 204 ~~eri~~i~~~a--~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~---~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
+.+.+.+..+.. .+-+.+- .|+|....-....+.+.++. |...+ ++| .-+-|++++++++++++|+||+|-
T Consensus 193 dl~~i~~~~~~~Gi~~h~wqs--DGItnC~~r~~~rl~~ai~~-RDs~~~~i~~V-~vWTVNd~~~m~~l~~~GVDGIIT 268 (302)
T 3rlg_A 193 DIGDVGKAYKKAGITGHIWQS--DGITNCLPRGLSRVNAAVAN-RDSANGFINKV-YYWTVDKRSTTRDALDAGVDGIMT 268 (302)
T ss_dssp CHHHHHHHHHHTTCCSCBEEE--EECCTTSCCCSHHHHHHHHH-HTSTTCCCSEE-EEECCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhcCCcCcEEec--CCcccceeccHHHHHHHHHh-ccCCCCceEEE-EEEeCCCHHHHHHHHHcCCCEEEC
Confidence 334444443332 2333332 35665541111223333332 22222 234 667899999999999999999985
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=93.17 E-value=2.5 Score=39.02 Aligned_cols=121 Identities=10% Similarity=0.139 Sum_probs=71.6
Q ss_pred CccEEEEEeCCCC-ChhhHHHHHHHHHHCCCCEEEEcCCCCCCC---CChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc
Q 021527 62 KVALIPYITAGDP-DLSTTAEALKLLDSCGSDIIELGVPYSDPL---ADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ 137 (311)
Q Consensus 62 ~~~li~yi~~G~P-~~~~~~e~~~~L~~~GaD~IElG~PfsDP~---aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~ 137 (311)
...++.=+.-||- +.+...+.++.+.++|+++|.|--=-.-|. ..|..+ +..++..+-|+..++.
T Consensus 78 ~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L-----------~p~~~~~~~I~Aa~~a 146 (295)
T 1xg4_A 78 SLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAI-----------VSKEEMVDRIRAAVDA 146 (295)
T ss_dssp CSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCB-----------CCHHHHHHHHHHHHHH
T ss_pred CCCEEecCCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCcc-----------CCHHHHHHHHHHHHHh
Confidence 4457777777886 778899999999999999999830000000 001000 1222223334444332
Q ss_pred -CCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeE
Q 021527 138 -MSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELV 196 (311)
Q Consensus 138 -~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I 196 (311)
...++.+.+--+.....|+++-+++ +.++|+|++.++-+| .++..++.+. ..+..+
T Consensus 147 ~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~---~~iP~~ 207 (295)
T 1xg4_A 147 KTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADA---VQVPIL 207 (295)
T ss_dssp CSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH---HCSCBE
T ss_pred ccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHH---cCCCEE
Confidence 3556667654443344567776664 578999999998887 3555555544 455544
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=93.17 E-value=1.3 Score=42.06 Aligned_cols=137 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred CccEEEEEe-C--CCC---------ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc------CC-
Q 021527 62 KVALIPYIT-A--GDP---------DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR------GT- 122 (311)
Q Consensus 62 ~~~li~yi~-~--G~P---------~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~------G~- 122 (311)
+..+-.|-+ . |+. +.+.+.+.++.+.+.|.+.+++- . |.
T Consensus 127 ~~~vp~y~~~i~~g~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~vKik----------------------~~~~~~~G~~ 184 (407)
T 2o56_A 127 REKIRTYASQLQFGWGDGSDKDMLTEPEQYAQAALTAVSEGYDAIKVD----------------------TVAMDRHGNW 184 (407)
T ss_dssp CSSEEEEEECGGGCCSTTCTTCCCCSHHHHHHHHHHHHHTTCSEEEEC----------------------CSSBCTTSCB
T ss_pred CCeeeeeeeeccCCccccccccccCCHHHHHHHHHHHHHcCCCEEEEc----------------------ccccCCcCcc
Q ss_pred ------------CHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHH
Q 021527 123 ------------NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK 190 (311)
Q Consensus 123 ------------~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~ 190 (311)
+++...+.++.+|+.+.--+-++.-.|.-+ ..+++.++.+.+.+
T Consensus 185 ~~s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~------------------------~~~~a~~~~~~l~~ 240 (407)
T 2o56_A 185 NQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFT------------------------DTTSAIQFGRMIEE 240 (407)
T ss_dssp SCSCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCS------------------------CHHHHHHHHHHHGG
T ss_pred ccCcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCC------------------------CHHHHHHHHHHHHh
Q ss_pred cCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH
Q 021527 191 NKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG 270 (311)
Q Consensus 191 ~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~ 270 (311)
+|+..+- ..++++..+.++++++.+++||+.|-.+.++++++++++
T Consensus 241 ~~i~~iE----------------------------------~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~ 286 (407)
T 2o56_A 241 LGIFYYE----------------------------------EPVMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLE 286 (407)
T ss_dssp GCCSCEE----------------------------------CSSCSSSHHHHHHHHHHCCSCEEECTTCCHHHHHHHHHH
T ss_pred cCCCEEe----------------------------------CCCChhhHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHH
Q ss_pred cC-CcEEEE
Q 021527 271 WG-ADGVIV 278 (311)
Q Consensus 271 ~G-ADGvIV 278 (311)
.| +|.+.+
T Consensus 287 ~~~~d~v~i 295 (407)
T 2o56_A 287 NGSLSVIQP 295 (407)
T ss_dssp TTCCSEECC
T ss_pred cCCCCEEec
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.25 Score=48.81 Aligned_cols=67 Identities=30% Similarity=0.321 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.++++.+.+..-.++-+-+.. +.+..+.+.++++|+.. ++||++| ++.++++++.+.++|||+++||
T Consensus 231 ~~~a~~l~~aG~d~I~id~a~-------g~~~~~~~~v~~i~~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 231 GERVAALVAAGVDVVVVDTAH-------GHSKGVIERVRWVKQTFPDVQVIGG-NIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp HHHHHHHHHTTCSEEEEECSC-------CSBHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhhcccceEEecccC-------CcchhHHHHHHHHHHHCCCceEEEe-eeCcHHHHHHHHHcCCCEEEEC
Confidence 577777766433343332222 22445678899999987 7898775 4667999999999999999996
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.21 Score=46.30 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=37.6
Q ss_pred chHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 236 GHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 236 ~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+.+.++.++.. .++|+.+-+|| +++++.++.+.|+|++.|||.+..
T Consensus 229 ~~l~~~v~~l~~~~~~~~I~ASGGI-t~~ni~~~~~aGaD~i~vGs~i~~ 277 (299)
T 2jbm_A 229 EELHPTATVLKAQFPSVAVEASGGI-TLDNLPQFCGPHIDVISMGMLTQA 277 (299)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEESSC-CTTTHHHHCCTTCCEEECTHHHHS
T ss_pred HHHHHHHHHhhccCCCeeEEEECCC-CHHHHHHHHHCCCCEEEEChhhcC
Confidence 3444555555542 35899999999 589999999999999999998765
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.27 Score=48.59 Aligned_cols=67 Identities=27% Similarity=0.332 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.++++.+.+..-.++-+-+.. +......+.++++|+.. ++||++| ++.++++++.+.++|||+++||
T Consensus 233 ~~~a~~l~~aG~d~I~id~a~-------g~~~~~~~~i~~ir~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 233 EERVKALVEAGVDVLLIDSSH-------GHSEGVLQRIRETRAAYPHLEIIGG-NVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHHHHHHHHTTCSEEEEECSC-------TTSHHHHHHHHHHHHHCTTCCEEEE-EECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhccCceEEecccc-------ccchHHHHHHHHHHHHCCCceEEEc-ccCcHHHHHHHHHhCCCEEEEC
Confidence 577777766433333332222 22345678899999987 7899774 4667999999999999999997
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=93.14 E-value=1.3 Score=39.27 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
++++++++. +++|. -+.|+++++++++.++|+||++-
T Consensus 201 ~~v~~~~~~-G~~v~-~WTvn~~~~~~~l~~~GVdgIiT 237 (252)
T 3qvq_A 201 QQVSDIKAA-GYKVL-AFTINDESLALKLYNQGLDAVFS 237 (252)
T ss_dssp HHHHHHHHT-TCEEE-EECCCCHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHC-CCEEE-EEcCCCHHHHHHHHHcCCCEEEe
Confidence 567777664 67774 46899999999999999999965
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.28 Score=44.87 Aligned_cols=70 Identities=20% Similarity=0.360 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cCC-CcEEEEecCcchhccCHHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QMS-CPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~~-iPiilm~Y~n~i~~~g~~~ 158 (311)
+.++.|++.|+++|| |...|+-.| .|++. .+.++.+++ ..+ +||++-+- .+.-.
T Consensus 136 ~~ak~l~~~G~~aVm---Plg~pIGsG------------~Gi~~---~~~L~~i~~~~~~~vPVI~~GG------I~tps 191 (268)
T 2htm_A 136 VLAKRLAALGTATVM---PLAAPIGSG------------WGVRT---RALLELFAREKASLPPVVVDAG------LGLPS 191 (268)
T ss_dssp HHHHHHHHHTCSCBE---EBSSSTTTC------------CCSTT---HHHHHHHHHTTTTSSCBEEESC------CCSHH
T ss_pred HHHHHHHhcCCCEEE---ecCccCcCC------------cccCC---HHHHHHHHHhcCCCCeEEEeCC------CCCHH
Confidence 555666666777663 333333333 23322 345777777 577 99998652 23356
Q ss_pred HHHHHHHcCCcEEEec
Q 021527 159 FMSTVRDIGIRGLVVP 174 (311)
Q Consensus 159 fi~~~~~aGadGviip 174 (311)
.+..+.+.|+|||++.
T Consensus 192 DAa~AmeLGAdgVlVg 207 (268)
T 2htm_A 192 HAAEVMELGLDAVLVN 207 (268)
T ss_dssp HHHHHHHTTCCEEEES
T ss_pred HHHHHHHcCCCEEEEC
Confidence 7888999999999995
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.18 Score=48.44 Aligned_cols=42 Identities=14% Similarity=0.376 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+.++.+|+.+++||++. |+.++|+++.+.++|+|+++|...
T Consensus 241 ~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~~aGad~I~vs~~ 282 (392)
T 2nzl_A 241 WEDIKWLRRLTSLPIVAK-GILRGDDAREAVKHGLNGILVSNH 282 (392)
T ss_dssp HHHHHHHC--CCSCEEEE-EECCHHHHHHHHHTTCCEEEECCG
T ss_pred HHHHHHHHHhhCCCEEEE-ecCCHHHHHHHHHcCCCEEEeCCC
Confidence 456999999999999997 567899999999999999999543
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.28 Score=48.09 Aligned_cols=45 Identities=36% Similarity=0.392 Sum_probs=37.8
Q ss_pred CchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 235 SGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
+....+.++++|+.+ ++||++|++ .++++++.+.++|+|+++||.
T Consensus 262 ~~~~~e~i~~i~~~~p~~pvi~g~~-~t~e~a~~l~~~G~d~I~v~~ 307 (494)
T 1vrd_A 262 SRRVIETLEMIKADYPDLPVVAGNV-ATPEGTEALIKAGADAVKVGV 307 (494)
T ss_dssp SHHHHHHHHHHHHHCTTSCEEEEEE-CSHHHHHHHHHTTCSEEEECS
T ss_pred hHHHHHHHHHHHHHCCCceEEeCCc-CCHHHHHHHHHcCCCEEEEcC
Confidence 345678899999987 799988765 569999999999999999954
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.6 Score=43.49 Aligned_cols=132 Identities=18% Similarity=0.169 Sum_probs=76.0
Q ss_pred HHHHHHHcCCcEEE--e---cCCChh-----hHHHHHHHHHHcCCCeEEE--eCCC--------ChHHHHHHHHHhC--C
Q 021527 159 FMSTVRDIGIRGLV--V---PDVPLE-----ETESLQKEAMKNKIELVLF--TTPT--------TPTDRMKAIVEAS--E 216 (311)
Q Consensus 159 fi~~~~~aGadGvi--i---pDlp~e-----e~~~~~~~~~~~gi~~I~l--isp~--------t~~eri~~i~~~a--~ 216 (311)
.++++.+.|+|++- + ++-+.| +..++.++|.++|+..+.. +.|. ...+.+...+..+ -
T Consensus 133 sVe~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaEL 212 (307)
T 3fok_A 133 NVSSMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGL 212 (307)
T ss_dssp CHHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTC
T ss_pred CHHHHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 35677888999954 2 454543 4667888999999987763 3322 2334443333321 2
Q ss_pred ceE--EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC--CHH----HHHHHHH-cCCcEEEEhhHhhchhh
Q 021527 217 GFV--YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS--KPE----HVQQVAG-WGADGVIVGSAMVKLLG 287 (311)
Q Consensus 217 gfi--Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs--t~e----~v~~v~~-~GADGvIVGSaiv~~~~ 287 (311)
|.. |.+-...+| +.++++-+.+.+||++-+|=+ +++ +++..++ .||-|+++|=.+...-.
T Consensus 213 GADs~~tivK~~y~-----------e~f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ~~~ 281 (307)
T 3fok_A 213 GNDSSYTWMKLPVV-----------EEMERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYPQD 281 (307)
T ss_dssp SSCCSSEEEEEECC-----------TTHHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSSCSS
T ss_pred CCCcCCCEEEeCCc-----------HHHHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhccCCC
Confidence 322 111000122 225777777889987766665 333 3455667 69999999976665321
Q ss_pred hcCCchhHHHHHHHHH
Q 021527 288 EAQSPEEGLKELEKFA 303 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~ 303 (311)
.++...++.+...+
T Consensus 282 --~dp~~~v~al~~iV 295 (307)
T 3fok_A 282 --GDVAAAVDTAARLV 295 (307)
T ss_dssp --SCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHH
Confidence 23455555555544
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=3.6 Score=38.59 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=52.1
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
||..+| .-.|..+.+++++.++..++.|+|.+-+--||-.+. +-+.+++..++|.+.+++
T Consensus 99 grvpVi--aGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~------------------s~~~l~~~f~~VA~a~~l 158 (343)
T 2v9d_A 99 RRVPVL--IGTGGTNARETIELSQHAQQAGADGIVVINPYYWKV------------------SEANLIRYFEQVADSVTL 158 (343)
T ss_dssp TSSCEE--EECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCC------------------CHHHHHHHHHHHHHTCSS
T ss_pred CCCcEE--EecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC------------------CHHHHHHHHHHHHHhcCC
Confidence 455554 556888999999999999999999999998884321 224556677788888899
Q ss_pred cEEEEecCcch
Q 021527 141 PIALFTYYNPI 151 (311)
Q Consensus 141 Piilm~Y~n~i 151 (311)
||++ |-+|-
T Consensus 159 Piil--Yn~P~ 167 (343)
T 2v9d_A 159 PVML--YNFPA 167 (343)
T ss_dssp CEEE--EECHH
T ss_pred CEEE--EeCch
Confidence 9887 55554
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.95 Score=42.79 Aligned_cols=136 Identities=10% Similarity=0.152 Sum_probs=88.6
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCc
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCP 141 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iP 141 (311)
.+-.|.+.|.++.+...+.++.+.+.|...+-+-+-.. ..++-++.++.+|+.+ +++
T Consensus 135 ~v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------------~~~~d~~~v~avR~~~g~~~~ 193 (377)
T 3my9_A 135 RIPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVK---------------------PHAEELRILETMRGEFGERID 193 (377)
T ss_dssp EEEBCEEECCSSHHHHHHHHHHHTTTTCCEEEEECSSS---------------------CHHHHHHHHHHHHHHHGGGSE
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------------cHHHHHHHHHHHHHHhCCCCe
Confidence 44457777777778888888888888999988853221 1223345677777653 456
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+.+- .|.- +..+++.++.+.++++|+..+- .
T Consensus 194 l~vD--an~~------------------------~~~~~A~~~~~~l~~~~i~~iE--q--------------------- 224 (377)
T 3my9_A 194 LRLD--FNQA------------------------LTPFGAMKILRDVDAFRPTFIE--Q--------------------- 224 (377)
T ss_dssp EEEE--CTTC------------------------CCTTTHHHHHHHHHTTCCSCEE--C---------------------
T ss_pred EEEe--CCCC------------------------cCHHHHHHHHHHHhhcCCCEEE--C---------------------
Confidence 6553 2311 1234566666677777765441 1
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhh
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGS 280 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGS 280 (311)
.++++..+.++++++.+++||+.|--+.+++++.++++.| +|.+.+--
T Consensus 225 -----------P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~ 273 (377)
T 3my9_A 225 -----------PVPRRHLDAMAGFAAALDTPILADESCFDAVDLMEVVRRQAADAISVKI 273 (377)
T ss_dssp -----------CSCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEECCH
T ss_pred -----------CCCccCHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEecc
Confidence 1122223567888888899999999999999999988655 78887643
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=2.4 Score=38.10 Aligned_cols=175 Identities=17% Similarity=0.228 Sum_probs=110.2
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
+||. ++.+...+++|+|.|=+= |--|=--||. +.+..+++..++|+-+-++.+
T Consensus 24 ~Pdp---v~aA~~ae~aGAdgITvH-----lReDrRHI~d----------------~Dv~~L~~~~~~~lNlE~a~t--- 76 (243)
T 1m5w_A 24 YPDP---VQAAFIAEQAGADGITVH-----LREDRRHITD----------------RDVRILRQTLDTRMNLEMAVT--- 76 (243)
T ss_dssp CSCH---HHHHHHHHTTTCSEEEEE-----CCTTCSSSCH----------------HHHHHHHHHCSSEEEEEECSS---
T ss_pred CCCH---HHHHHHHHHcCCCEEEeC-----CCCCcccCCH----------------HHHHHHHHhcCCCEEeccCCC---
Confidence 5765 556666778999999883 3233333332 244555655678888877644
Q ss_pred ccCHHHHHHHHHHcCCcEE-EecCCCh--------------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 153 KRGVDNFMSTVRDIGIRGL-VVPDVPL--------------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGv-iipDlp~--------------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
++|++.+.+.--+-+ ++||-+- +....+.+.+++.|+.+.+|+.|. .+.++...+....
T Consensus 77 ----~emi~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd--~~qi~aA~~~GA~ 150 (243)
T 1m5w_A 77 ----EEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD--EEQIKAAAEVGAP 150 (243)
T ss_dssp ----HHHHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHTTCS
T ss_pred ----HHHHHHHHHcCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcC
Confidence 789999888876654 4566331 235677888999999999999987 4556554443333
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhc------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKES------STKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
+ +.-.+|....... +..-.+.++++++. .++-|-+|-|.+ .+|+..+... +-.-+=||.+|+-
T Consensus 151 ~--IELhTG~Ya~a~~-~~~~~~el~~i~~aa~~A~~lGL~VnAGHgL~-y~Nv~~ia~ip~i~ElnIGHaiia 220 (243)
T 1m5w_A 151 F--IEIHTGCYADAKT-DAEQAQELARIAKAATFAASLGLKVNAGHGLT-YHNVKAIAAIPEMHELNIGHAIIG 220 (243)
T ss_dssp E--EEEECHHHHHCCS-HHHHHHHHHHHHHHHHHHHHTTCEEEEESSCC-TTTHHHHHTCTTEEEEEECHHHHH
T ss_pred E--EEEechhhhcCCC-chhHHHHHHHHHHHHHHHHHcCCEEecCCCCC-HHHHHHHhhCCCCeEEccCHHHHH
Confidence 3 3323332222111 11222345555442 368899999997 6888888643 2477889988775
|
| >3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=5.8 Score=36.88 Aligned_cols=191 Identities=15% Similarity=0.119 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
+.+.+.+.++.++++..|+ +-...|+.+...++++.+.. .++++++|.++=. .-||-+
T Consensus 69 ~p~~~~L~~~m~~k~~~Li--VALD~~~~~~al~l~~~l~~-~v~~vKvG~~l~~--~~G~~~----------------- 126 (312)
T 3g3d_A 69 HPVASKLLRLMQKKETNLC--LSADVSLARELLQLADALGP-SICMLKTHVDILN--DFTLDV----------------- 126 (312)
T ss_dssp CHHHHHHHHHHHHHTCCEE--EECCCSCHHHHHHHHHHHGG-GCSEEEECGGGCT--TCCHHH-----------------
T ss_pred ChHHHHHHHHHHHhCCCEE--EEeCCCCHHHHHHHHHHhCC-CceEEEEcHHHHH--HhCHHH-----------------
Confidence 3445554444444445554 34466899999999999865 4999999999832 235321
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHH----HHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeCCC
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMS----TVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTTPT 202 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~----~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lisp~ 202 (311)
++.++++.+..+.+|++..-+.++-.+ ...-++ .+. .|+|.+.+.-..-.+ ...+++.....++.+..+.+-+
T Consensus 127 v~~L~~~a~~~g~~IflDlK~~DIpnT-v~~a~~~a~~~~a-~~aD~vTVHa~~G~~~m~aa~e~~~~~~~gV~vLtsms 204 (312)
T 3g3d_A 127 MKELITLAKCHEFLIFEDRKFADIGNT-VKKQYEGGIFKIA-SWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMS 204 (312)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECSCHHH-HHHHHHCTTTCHH-HHCSEEEEESTTCTHHHHHHHHHHTTTTCEEEEECCCS
T ss_pred HHHHHHHHhhCCCEEEEECcccccHHH-HHHHHHHHHHhhh-ccCCEEEEccCCCHHHHHHHHHhhhhcCCeEEEEEecC
Confidence 223333222246788887655444211 011111 111 368999886443223 3334444344455544444322
Q ss_pred Ch--------HHHHHHHHHhCC-ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCC-------------C
Q 021527 203 TP--------TDRMKAIVEASE-GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGI-------------S 260 (311)
Q Consensus 203 t~--------~eri~~i~~~a~-gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGI-------------s 260 (311)
.. .+...++++... |..=+|... + . ..-+-.+++--|| .
T Consensus 205 ~~g~l~~~~~~~~V~~lA~~~~~gldGvVcs~-----e--~------------~~~~dfl~vTPGIrp~~~~~~~g~qv~ 265 (312)
T 3g3d_A 205 STGSLATGDYTRAAVRMAEEHSEFVVGFISGS-----R--V------------SMKPEFLHLTPGVQLEAGGDNLGQQYN 265 (312)
T ss_dssp STTCCCCHHHHHHHHHHHHHTTTTEEEEECSS-----C--C------------CCCTTSEEEECSBCSSSEECTTSCEEB
T ss_pred CccccccCCHHHHHHHHHHhhhCCCCeEEeCh-----h--h------------ccCCCeEEEcCCcCCCcCCCCcCCccc
Confidence 11 133344444433 333333211 1 0 0111224454555 3
Q ss_pred CHHHHHHHH-HcCCcEEEEhhHhhc
Q 021527 261 KPEHVQQVA-GWGADGVIVGSAMVK 284 (311)
Q Consensus 261 t~e~v~~v~-~~GADGvIVGSaiv~ 284 (311)
||+ ++. +.|||.+|||-.|++
T Consensus 266 TP~---~Ai~~~GaD~iVVGRpIt~ 287 (312)
T 3g3d_A 266 SPQ---EVIGKRGSDIIIVGRGIIS 287 (312)
T ss_dssp CHH---HHHHTTCCSEEEESHHHHT
T ss_pred CHH---HHHHhCCCCEEEEChhhcC
Confidence 454 445 689999999999997
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.83 Score=43.56 Aligned_cols=137 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred CccEEEEEeCC-----CCChh----hHHHHHHHHHHCCCCEEEE-cCCCCCCCCChHHHHHHHHHHHHcC---CCHHHHH
Q 021527 62 KVALIPYITAG-----DPDLS----TTAEALKLLDSCGSDIIEL-GVPYSDPLADGPVIQAAATRSLARG---TNFNAIL 128 (311)
Q Consensus 62 ~~~li~yi~~G-----~P~~~----~~~e~~~~L~~~GaD~IEl-G~PfsDP~aDGp~Iq~a~~~Al~~G---~~~~~~~ 128 (311)
|..+-.|.+.| +|+.+ ...+.++.+.+.|.+.+-+ - .| .+.++-+
T Consensus 130 r~~v~~y~s~~~~~~~~~~~~~~i~~~~~~a~~~~~~G~~~~K~~k----------------------~g~~~~~~~~d~ 187 (394)
T 3mqt_A 130 KAQLTPYFTLYPSVAADATLSEIVEAYKPLIAKAKERGAKAVKVCI----------------------IPNDKVSDKEIV 187 (394)
T ss_dssp SSSBCCEEECCCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEEEEC----------------------CCCTTSCHHHHH
T ss_pred CCeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHcCCCEEEecc----------------------cCCCccCHHHHH
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCC-ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV-PLEETESLQKEAMKNKIELVLFTTPTTPTDR 207 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl-p~ee~~~~~~~~~~~gi~~I~lisp~t~~er 207 (311)
+.++.+|+.+.--+-++.-.| .-+ ..+++.++.+.+.++|+..+
T Consensus 188 ~~v~avR~a~G~d~~l~vDan------------------------~~~~~~~~A~~~~~~L~~~~i~~i----------- 232 (394)
T 3mqt_A 188 AYLRELREVIGWDMDMMVDCL------------------------YRWTDWQKARWTFRQLEDIDLYFI----------- 232 (394)
T ss_dssp HHHHHHHHHHCSSSEEEEECT------------------------TCCSCHHHHHHHHHHTGGGCCSEE-----------
T ss_pred HHHHHHHHHhCCCCeEEEECC------------------------CCCCCHHHHHHHHHHHhhcCCeEE-----------
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEE
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIV 278 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIV 278 (311)
...++++..+.++++|+.+++||+.|-.+.++++++++++.| +|.+.+
T Consensus 233 -----------------------EeP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~ 281 (394)
T 3mqt_A 233 -----------------------EACLQHDDLIGHQKLAAAINTRLCGAEMSTTRFEAQEWLEKTGISVVQS 281 (394)
T ss_dssp -----------------------ESCSCTTCHHHHHHHHHHSSSEEEECTTCCHHHHHHHHHHHHCCSEECC
T ss_pred -----------------------ECCCCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCeEec
|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C | Back alignment and structure |
|---|
Probab=92.91 E-value=1.4 Score=33.41 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=52.4
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc---CCCcEEEEecCcchhccCH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ---MSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~---~~iPiilm~Y~n~i~~~g~ 156 (311)
.+.++.+.+...|.+-+++-. |-.|| ++.++++|+. .++|+++++-.. -
T Consensus 36 ~~al~~l~~~~~dlvllD~~~--p~~~g--------------------~~~~~~l~~~~~~~~~pii~~s~~~------~ 87 (122)
T 3gl9_A 36 QIALEKLSEFTPDLIVLXIMM--PVMDG--------------------FTVLKKLQEKEEWKRIPVIVLTAKG------G 87 (122)
T ss_dssp HHHHHHHTTBCCSEEEECSCC--SSSCH--------------------HHHHHHHHTSTTTTTSCEEEEESCC------S
T ss_pred HHHHHHHHhcCCCEEEEeccC--CCCcH--------------------HHHHHHHHhcccccCCCEEEEecCC------c
Confidence 556666777889999997543 55566 4566777653 578999987432 2
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHH
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETE 182 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~ 182 (311)
......+.+.|+++++.-.+..++..
T Consensus 88 ~~~~~~~~~~Ga~~~l~KP~~~~~L~ 113 (122)
T 3gl9_A 88 EEDESLALSLGARKVMRKPFSPSQFI 113 (122)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHH
T ss_pred hHHHHHHHhcChhhhccCCCCHHHHH
Confidence 45667788999999988766555544
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.23 Score=47.03 Aligned_cols=102 Identities=15% Similarity=0.202 Sum_probs=62.8
Q ss_pred HHHHHHHHHHc-CC-ccEEEEEeCCC------CChhhHHHHHHHHHHCCCCEEEEcCCCCCCC---CChHHHHHHHHHHH
Q 021527 50 LAETFTRLKKQ-GK-VALIPYITAGD------PDLSTTAEALKLLDSCGSDIIELGVPYSDPL---ADGPVIQAAATRSL 118 (311)
Q Consensus 50 i~~~f~~~~~~-~~-~~li~yi~~G~------P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~---aDGp~Iq~a~~~Al 118 (311)
+.+.++..++. |. ..+..=+.+.+ -+.+++.++++.|++.|+|.|++......+- ..+|
T Consensus 211 ~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~---------- 280 (363)
T 3l5l_A 211 LLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGP---------- 280 (363)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCT----------
T ss_pred HHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCc----------
Confidence 34566666654 32 23444455432 3457899999999999999999954321110 0121
Q ss_pred HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcC-CcEEEe
Q 021527 119 ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIG-IRGLVV 173 (311)
Q Consensus 119 ~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG-adGvii 173 (311)
+.+ .+.++++|+.+++||+.-+-.+ . .+.++.+.+.| +|.|.+
T Consensus 281 --~~~----~~~~~~ir~~~~iPVi~~GgI~-----s-~e~a~~~l~~G~aD~V~i 324 (363)
T 3l5l_A 281 --AFM----GPIAERVRREAKLPVTSAWGFG-----T-PQLAEAALQANQLDLVSV 324 (363)
T ss_dssp --TTT----HHHHHHHHHHHTCCEEECSSTT-----S-HHHHHHHHHTTSCSEEEC
T ss_pred --chh----HHHHHHHHHHcCCcEEEeCCCC-----C-HHHHHHHHHCCCccEEEe
Confidence 122 2467778888899999876432 1 23455666677 999887
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.79 Score=40.68 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=62.4
Q ss_pred HHHHHHH---HHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCH
Q 021527 49 GLAETFT---RLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLADGPVIQAAATRSLARGTNF 124 (311)
Q Consensus 49 ~i~~~f~---~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~ 124 (311)
.+.+.++ .+++.|.+.-+.. -+++| .+.++.+.+.| +|.|-+. .-+|=.+|.. + .
T Consensus 99 ~~~~~i~~~~~i~~~G~k~gval-np~tp-----~~~~~~~l~~g~~D~Vlvm--sV~pGf~gq~------------f-~ 157 (227)
T 1tqx_A 99 DTERCIQLAKEIRDNNLWCGISI-KPKTD-----VQKLVPILDTNLINTVLVM--TVEPGFGGQS------------F-M 157 (227)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEE-CTTSC-----GGGGHHHHTTTCCSEEEEE--SSCTTCSSCC------------C-C
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe-CCCCc-----HHHHHHHhhcCCcCEEEEe--eeccCCCCcc------------c-c
Confidence 3667777 7777776655433 66777 66677777765 9999774 1234344421 0 1
Q ss_pred HHHHHHHHHhhccC-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 125 NAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 125 ~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
...++-++++|+.. +++|.+-|-.| .+-+..+.++|+|.+++.
T Consensus 158 ~~~l~ki~~lr~~~~~~~I~VdGGI~-------~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 158 HDMMGKVSFLRKKYKNLNIQVDGGLN-------IETTEISASHGANIIVAG 201 (227)
T ss_dssp GGGHHHHHHHHHHCTTCEEEEESSCC-------HHHHHHHHHHTCCEEEES
T ss_pred hHHHHHHHHHHHhccCCeEEEECCCC-------HHHHHHHHHcCCCEEEEe
Confidence 12244555555543 78888876444 456778999999999984
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=92.82 E-value=3.3 Score=38.36 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=96.0
Q ss_pred hhhHHHHHHHHHHCC----CCEEEEc-C---CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 76 LSTTAEALKLLDSCG----SDIIELG-V---PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 76 ~~~~~e~~~~L~~~G----aD~IElG-~---PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
.+...+.++.|.+.| ..++--+ + |=+.|+ + -.|..+++.++++++++++..+|++--.+
T Consensus 54 ~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~---------s----f~Glg~~~GL~~L~~~~~e~GLpv~Tev~ 120 (298)
T 3fs2_A 54 RDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLK---------A----ARGIGLEKALEVFSDLKKEYGFPVLTDIH 120 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC----------------------CCHHHHHHHHHHHHHHHCCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcccccCCCCCCC---------C----cCCcCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 467788888887764 4444432 0 222222 0 13455778899999999999999876432
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC--ChHHH---HHHHHHhC-CceEEE
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT--TPTDR---MKAIVEAS-EGFVYL 221 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~--t~~er---i~~i~~~a-~gfiY~ 221 (311)
+ ..-++.+.+. +|-+-|+-.-..... +..++.+.|. +|.+-+.. +++|. ++.+.+.. ...+.|
T Consensus 121 -D-------~~~v~~l~~~-vd~lkIgA~~~~n~~-LLr~va~~gk-PVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~ 189 (298)
T 3fs2_A 121 -T-------EEQCAAVAPV-VDVLQIPAFLCRQTD-LLIAAARTGR-VVNVKKGQFLAPWDMKNVLAKITESGNPNVLAT 189 (298)
T ss_dssp -S-------HHHHHHHTTT-CSEEEECGGGTTCHH-HHHHHHHTTS-EEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEE
T ss_pred -C-------HHHHHHHHhh-CCEEEECccccCCHH-HHHHHHccCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 2 2344555555 899888843223333 4445566774 56666654 33332 23332322 234444
Q ss_pred E--ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEe---------------eCCCC--HHHHHHHHHcCCcEEEEhhHh
Q 021527 222 V--SSIGVTGARASISGHVQTLLREIKESSTKPVAVG---------------FGISK--PEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 222 v--s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG---------------fGIst--~e~v~~v~~~GADGvIVGSai 282 (311)
- +.+ +.. ....++ ..+..+|+ +++||++. .|-+. +.-.......||||++|=.-+
T Consensus 190 erg~~y---~~~-~~~vdl-~~i~~lk~-~~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~ 263 (298)
T 3fs2_A 190 ERGVSF---GYN-TLVSDM-RALPIMAG-LGAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETHE 263 (298)
T ss_dssp ECCEEC---SSS-CEECCT-THHHHHHT-TTSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred ECCCCC---CCC-CCccCH-HHHHHHHH-cCCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecC
Confidence 2 222 221 111122 34777888 89999772 23110 233456667899999986554
Q ss_pred h
Q 021527 283 V 283 (311)
Q Consensus 283 v 283 (311)
.
T Consensus 264 t 264 (298)
T 3fs2_A 264 D 264 (298)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=92.82 E-value=1.1 Score=41.45 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=52.7
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
.||..+| .-.|..+.+++++.++..++.|+|.+-+--||-.+. +-+.+++..++|.+.++
T Consensus 90 ~grvpVi--aGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~------------------s~~~l~~~f~~va~a~~ 149 (314)
T 3qze_A 90 KGRIPVI--AGTGANSTREAVALTEAAKSGGADACLLVTPYYNKP------------------TQEGMYQHFRHIAEAVA 149 (314)
T ss_dssp TTSSCEE--EECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC------------------CHHHHHHHHHHHHHHSC
T ss_pred CCCCcEE--EeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC------------------CHHHHHHHHHHHHHhcC
Confidence 3554554 467889999999999999999999999998874431 22345667777877789
Q ss_pred CcEEEEecCcch
Q 021527 140 CPIALFTYYNPI 151 (311)
Q Consensus 140 iPiilm~Y~n~i 151 (311)
+||++ |-+|-
T Consensus 150 lPiil--Yn~P~ 159 (314)
T 3qze_A 150 IPQIL--YNVPG 159 (314)
T ss_dssp SCEEE--EECHH
T ss_pred CCEEE--EeCcc
Confidence 99988 54553
|
| >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A | Back alignment and structure |
|---|
Probab=92.79 E-value=1.1 Score=33.82 Aligned_cols=75 Identities=23% Similarity=0.306 Sum_probs=51.4
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+...|++-+++-. |-.|| ++.++++|+..++|+++++-.+ -...
T Consensus 36 ~~al~~~~~~~~dlii~D~~~--p~~~g--------------------~~~~~~lr~~~~~~ii~~t~~~------~~~~ 87 (120)
T 3f6p_A 36 NEAVEMVEELQPDLILLDIML--PNKDG--------------------VEVCREVRKKYDMPIIMLTAKD------SEID 87 (120)
T ss_dssp HHHHHHHHTTCCSEEEEETTS--TTTHH--------------------HHHHHHHHTTCCSCEEEEEESS------CHHH
T ss_pred HHHHHHHhhCCCCEEEEeCCC--CCCCH--------------------HHHHHHHHhcCCCCEEEEECCC------ChHH
Confidence 455666677789999997543 32344 4577777777789999887432 2344
Q ss_pred HHHHHHcCCcEEEecCCChhhHH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETE 182 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~ 182 (311)
...+.+.|+++++.-.+..++..
T Consensus 88 ~~~~~~~ga~~~l~KP~~~~~l~ 110 (120)
T 3f6p_A 88 KVIGLEIGADDYVTKPFSTRELL 110 (120)
T ss_dssp HHHHHHTTCCEEEEESCCHHHHH
T ss_pred HHHHHhCCcceeEcCCCCHHHHH
Confidence 56688999999988756555543
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=4 Score=44.39 Aligned_cols=171 Identities=13% Similarity=0.100 Sum_probs=92.4
Q ss_pred HHHHHHcCCccEEEEEe-----CCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 54 FTRLKKQGKVALIPYIT-----AGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~-----~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
+..+++......+..+. .||..+ +...+.++...++|+|.+.+-.+.||- .- ..+
T Consensus 597 l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~~v~~a~~~Gvd~irif~~~sd~----~~--------------~~~ 658 (1150)
T 3hbl_A 597 LERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWV----DQ--------------MKV 658 (1150)
T ss_dssp HHHHHHHCCSSEEEEEEETTTBTCSSCCCHHHHHHHHHHHHHTTCCEEEEECTTCCG----GG--------------GHH
T ss_pred HHHHHHhCCCCeEEEEeccccccccccCCchhHHHHHHHHHhCCcCEEEEEeeCCHH----HH--------------HHH
Confidence 33444444444444444 355443 335677888899999999997666652 11 112
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchh------ccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-C
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPIL------KRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-K 192 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~------~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-g 192 (311)
.++.+++....-....+|+...+ .+.. .++++.+.++|+|.+.++| +.+++..++...+++. +
T Consensus 659 ---~~~~~~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~ 735 (1150)
T 3hbl_A 659 ---ANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVD 735 (1150)
T ss_dssp ---HHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHhhheeEEEeecccccChhhcCCCCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHHHHHHHHHHHHHhcC
Confidence 23333332222233345552211 1233 3456678889999999998 5567777777777664 5
Q ss_pred CCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhh
Q 021527 193 IELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 193 i~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
+.+-+-...+.--.-...++....|..++- +..| -|.+++. +.+.+++..++.
T Consensus 736 ~~i~~H~Hnt~G~a~An~laA~~aGa~~vD~ai~G-lG~~~gn-~~lE~lv~~L~~ 789 (1150)
T 3hbl_A 736 LPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVAS-MSGLTSQ-PSANSLYYALNG 789 (1150)
T ss_dssp SCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGG-GCSBTSC-CBHHHHHHHTTT
T ss_pred CeEEEEeCCCCcHHHHHHHHHHHhCCCEEEEeccc-cCCCCCC-ccHHHHHHHHHh
Confidence 444344443333233333444445666663 3433 3444333 346666666654
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=92.78 E-value=0.49 Score=44.29 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=63.8
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.++..+.++.|++.|+++||= |+... + ++..+++++.+++||..-...+
T Consensus 201 ~~~~a~~~~~~l~~~~i~~iE~------P~~~~---------------~----~~~~~~l~~~~~iPI~~de~~~----- 250 (359)
T 1mdl_A 201 DVPAAIKRSQALQQEGVTWIEE------PTLQH---------------D----YEGHQRIQSKLNVPVQMGENWL----- 250 (359)
T ss_dssp CHHHHHHHHHHHHHHTCSCEEC------CSCTT---------------C----HHHHHHHHHTCSSCEEECTTCC-----
T ss_pred CHHHHHHHHHHHHHhCCCeEEC------CCChh---------------h----HHHHHHHHHhCCCCEEeCCCCC-----
Confidence 4577888899999999999883 32110 1 3466778888899998865432
Q ss_pred CHHHHHHHHHHcCCcEEEecCCC----hhhHHHHHHHHHHcCCCeEEE
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVP----LEETESLQKEAMKNKIELVLF 198 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp----~ee~~~~~~~~~~~gi~~I~l 198 (311)
+.++|.+.+.+-.+|.+ .+|+. +.+..++...++++|+...+-
T Consensus 251 ~~~~~~~~i~~~~~d~v-~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~ 297 (359)
T 1mdl_A 251 GPEEMFKALSIGACRLA-MPDAMKIGGVTGWIRASALAQQFGIPMSSH 297 (359)
T ss_dssp SHHHHHHHHHTTCCSEE-CCBTTTTTHHHHHHHHHHHHHHTTCCBCCB
T ss_pred CHHHHHHHHHcCCCCEE-eecchhhCCHHHHHHHHHHHHHcCCeEeec
Confidence 34555555555557775 55543 467888999999999986543
|
| >3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=5.6 Score=36.11 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.+.++.++++..|+ +-...|+.+...++++.+.. .++++++|.++-. .-||- +.+
T Consensus 16 ~~~~~l~~~m~~k~~~Li--VALD~~~~~~al~l~~~l~~-~v~~~KvG~~l~~--~~G~~----------------~~v 74 (267)
T 3gdm_A 16 PVAAKLFNIMHEKQTNLC--ASLDVRTTKELLELVEALGP-KICLLKTHVDILT--DFSME----------------GTV 74 (267)
T ss_dssp HHHHHHHHHHHHHTCCEE--EECCCSCHHHHHHHHHHHGG-GCSEEEECGGGCS--SCCTT----------------TTH
T ss_pred hHHHHHHHHHHhhCCCEE--EEeCcCCHHHHHHHHHHhCC-cCcEEEECHHHHH--hcCHH----------------HHH
Confidence 344444444443344454 34566899999999999865 4999999999832 12422 012
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHH-H---HHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHc---CCCeEEEeC
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDN-F---MSTVRDIGIRGLVVPDVP-LEETESLQKEAMKN---KIELVLFTT 200 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~-f---i~~~~~aGadGviipDlp-~ee~~~~~~~~~~~---gi~~I~lis 200 (311)
+.++++.+..+.+|++..-+.++-.+ ..+ + +..+.+ ++|.+.++-.. .+-...+++.+++. +-.++.+..
T Consensus 75 ~~L~~l~~~~g~~IflDlK~~DIpnT-v~~~y~~a~~~~~~-~ad~vTVH~~~G~~~~~aa~~~a~~~~~~~~~lllla~ 152 (267)
T 3gdm_A 75 KPLKALSAKYNFLLFEDRRFADIGNT-VKLQYSAGVYRIAE-WADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152 (267)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHH-HHHHHHSTTTCHHH-HCSEEEEEGGGCTHHHHHHHHHHHHHCCSCCEEEEECS
T ss_pred HHHHHHHhhcCCeEEEEeccccchHH-HHHHHHHHHHHHHh-hCCEEEEeccCCHHHHHHHHHHHHhhcccCCCeEEEEE
Confidence 23444433346778887655444211 011 1 011222 37888885332 23344456666555 333333332
Q ss_pred CCCh---------HHHHHHHHHhCC-ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC----------
Q 021527 201 PTTP---------TDRMKAIVEASE-GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS---------- 260 (311)
Q Consensus 201 p~t~---------~eri~~i~~~a~-gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs---------- 260 (311)
.|+ .+...++++.+. |..=+|... + .+. +..-+--+++-=||+
T Consensus 153 -mss~~~l~~~~~~~~v~~~A~~a~~g~dGvV~s~-----~--~~~---------~~~g~~f~~vTPGIr~~~~g~~~gd 215 (267)
T 3gdm_A 153 -LSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQR-----D--MGG---------RDEGYDWLIMTPGVGLDDKGDALGQ 215 (267)
T ss_dssp -CCSTTCCCCHHHHHHHHHHHTTCTTTEEEEECSS-----C--CCC---------GGGTCCCEEEECSEECCCTTCTTGG
T ss_pred -cCCccccccCCHHHHHHHHHHHHhcCCCeEEeCc-----c--chh---------hccCCCCEEECCCcCCCcCCCcccc
Confidence 222 134444555443 433333211 1 110 222112233433332
Q ss_pred ---CHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 261 ---KPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 261 ---t~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
||+ ++.+.|+|-+|||=.|++
T Consensus 216 Q~rTP~---~Ai~~GaD~iVVGRpI~~ 239 (267)
T 3gdm_A 216 QYRTVD---DVVSTGSDIIIVGRGLFA 239 (267)
T ss_dssp GSEEHH---HHHHTTCSEEEECGGGTS
T ss_pred CCCCHH---HHHHcCCCEEEEChhhcc
Confidence 454 445799999999998887
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.75 E-value=3.3 Score=38.03 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=51.7
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
.||..+| .-.|..+.+++++.++..++.|+|.+-+--||-.+. +-+.+++..++|.+.++
T Consensus 83 ~grvpvi--aGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~------------------~~~~l~~~f~~ia~a~~ 142 (304)
T 3cpr_A 83 GDRAKLI--AGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKP------------------SQEGLLAHFGAIAAATE 142 (304)
T ss_dssp TTTSEEE--EECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCC------------------CHHHHHHHHHHHHHHCC
T ss_pred CCCCcEE--ecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC------------------CHHHHHHHHHHHHHhcC
Confidence 3555544 556888999999999999999999999998884331 22345667777777789
Q ss_pred CcEEEEecCcch
Q 021527 140 CPIALFTYYNPI 151 (311)
Q Consensus 140 iPiilm~Y~n~i 151 (311)
+||++ |-+|-
T Consensus 143 lPiil--Yn~P~ 152 (304)
T 3cpr_A 143 VPICL--YDIPG 152 (304)
T ss_dssp SCEEE--EECHH
T ss_pred CCEEE--EeCcc
Confidence 99887 54454
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=1.3 Score=41.20 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe-cCCChhhHHHHHHHHHHc-CCC-eEEEe--CCCChHHHHHHHH
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV-PDVPLEETESLQKEAMKN-KIE-LVLFT--TPTTPTDRMKAIV 212 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii-pDlp~ee~~~~~~~~~~~-gi~-~I~li--sp~t~~eri~~i~ 212 (311)
++.|++.-.... + ...+++..+.++|+-|++. ..++.++..+..+.+++. +.. .+-++ .|. ..+.++...
T Consensus 11 ~~~Pii~apM~g-~---s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~-~~~~~~~a~ 85 (332)
T 2z6i_A 11 IDYPIFQGGMAW-V---ADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLTDKPFGVNIMLLSPF-VEDIVDLVI 85 (332)
T ss_dssp CSSSEEECCCTT-T---CCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHCCSCEEEEECTTSTT-HHHHHHHHH
T ss_pred CCCCEEeCCCCC-C---CcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecCCCCC-HHHHHHHHH
Confidence 567877654432 2 2357888899999988885 345666666555555543 211 22222 232 234444443
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
+ .|+..+....| .+. ++++++|+. ++|+++ .+.+.+.++.+.+.|+|++++
T Consensus 86 ~--~g~d~V~~~~g-------~p~---~~i~~l~~~-g~~v~~--~v~~~~~a~~~~~~GaD~i~v 136 (332)
T 2z6i_A 86 E--EGVKVVTTGAG-------NPS---KYMERFHEA-GIIVIP--VVPSVALAKRMEKIGADAVIA 136 (332)
T ss_dssp H--TTCSEEEECSS-------CGG---GTHHHHHHT-TCEEEE--EESSHHHHHHHHHTTCSCEEE
T ss_pred H--CCCCEEEECCC-------ChH---HHHHHHHHc-CCeEEE--EeCCHHHHHHHHHcCCCEEEE
Confidence 4 34444432221 232 456777764 677764 578999999999999999999
|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C | Back alignment and structure |
|---|
Probab=92.74 E-value=2 Score=32.50 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=58.7
Q ss_pred EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc--
Q 021527 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-- 248 (311)
Q Consensus 171 viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-- 248 (311)
+++.|=.......+...+++.|...+. + .+..+-++.+.+.....+.+ ... ..| .+-.++++++|+.
T Consensus 5 ILivdd~~~~~~~l~~~l~~~g~~v~~-~--~~~~~al~~l~~~~~dlvll-D~~-~p~------~~g~~~~~~l~~~~~ 73 (122)
T 3gl9_A 5 VLLVDDSAVLRKIVSFNLKKEGYEVIE-A--ENGQIALEKLSEFTPDLIVL-XIM-MPV------MDGFTVLKKLQEKEE 73 (122)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEE-E--SSHHHHHHHHTTBCCSEEEE-CSC-CSS------SCHHHHHHHHHTSTT
T ss_pred EEEEeCCHHHHHHHHHHHHHCCcEEEE-e--CCHHHHHHHHHhcCCCEEEE-ecc-CCC------CcHHHHHHHHHhccc
Confidence 344443333455567777888876442 2 34445555443333333333 211 111 1234788888775
Q ss_pred -CCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 249 -STKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 249 -~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.++|+++=.+-.+.+...+..+.|||+++.
T Consensus 74 ~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~ 104 (122)
T 3gl9_A 74 WKRIPVIVLTAKGGEEDESLALSLGARKVMR 104 (122)
T ss_dssp TTTSCEEEEESCCSHHHHHHHHHTTCSEEEE
T ss_pred ccCCCEEEEecCCchHHHHHHHhcChhhhcc
Confidence 368998888888899999999999999865
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.81 Score=42.97 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=64.5
Q ss_pred HHHHHHHHHHc-CC-ccEEEEEeCC-----CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCC---CChHHHHHHHHHHHH
Q 021527 50 LAETFTRLKKQ-GK-VALIPYITAG-----DPDLSTTAEALKLLDSCGSDIIELGVPYSDPL---ADGPVIQAAATRSLA 119 (311)
Q Consensus 50 i~~~f~~~~~~-~~-~~li~yi~~G-----~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~---aDGp~Iq~a~~~Al~ 119 (311)
+.+.++..++. |. ..+..=+.+. .-+.+++.++++.|++.|+|.|++.....++- ..+|
T Consensus 205 ~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~----------- 273 (349)
T 3hgj_A 205 PLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAP----------- 273 (349)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCT-----------
T ss_pred HHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCc-----------
Confidence 45566666654 32 2344445552 34568899999999999999999964221211 1111
Q ss_pred cCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcC-CcEEEec
Q 021527 120 RGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIG-IRGLVVP 174 (311)
Q Consensus 120 ~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG-adGviip 174 (311)
+.+ ++.++++|+.+++||+..+-.+ . .+.++.+.+.| +|.|-+.
T Consensus 274 -~~~----~~~~~~ir~~~~iPVi~~Ggi~-----t-~e~a~~~l~~G~aD~V~iG 318 (349)
T 3hgj_A 274 -GFQ----VPFADAVRKRVGLRTGAVGLIT-----T-PEQAETLLQAGSADLVLLG 318 (349)
T ss_dssp -TTT----HHHHHHHHHHHCCEEEECSSCC-----C-HHHHHHHHHTTSCSEEEES
T ss_pred -ccc----HHHHHHHHHHcCceEEEECCCC-----C-HHHHHHHHHCCCceEEEec
Confidence 122 3477788888899998876432 1 23455666667 9999883
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 311 | ||||
| d1rd5a_ | 261 | c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Ze | 3e-79 | |
| d1ujpa_ | 271 | c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus t | 1e-75 | |
| d1geqa_ | 248 | c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon | 2e-69 | |
| d1qopa_ | 267 | c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonell | 1e-64 | |
| d2f6ua1 | 231 | c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglycer | 7e-52 | |
| d1viza_ | 229 | c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus s | 2e-40 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 2e-14 | |
| d1q6oa_ | 213 | c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo | 2e-09 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 2e-07 | |
| d1hg3a_ | 224 | c.1.1.1 (A:) Triosephosphate isomerase {Archaeon P | 2e-06 | |
| d1w0ma_ | 226 | c.1.1.1 (A:) Triosephosphate isomerase {Thermoprot | 5e-06 | |
| d1thfd_ | 253 | c.1.2.1 (D:) Cyclase subunit (or domain) of imidaz | 1e-05 | |
| d1h5ya_ | 252 | c.1.2.1 (A:) Cyclase subunit (or domain) of imidaz | 2e-05 | |
| d1ka9f_ | 251 | c.1.2.1 (F:) Cyclase subunit (or domain) of imidaz | 3e-04 | |
| d1rpxa_ | 230 | c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P | 0.002 | |
| d1vzwa1 | 239 | c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoi | 0.002 |
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Score = 239 bits (611), Expect = 3e-79
Identities = 152/261 (58%), Positives = 200/261 (76%), Gaps = 4/261 (1%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+++T L +GK A IPYITAGDPDL+TTAEAL+LLD CG+D+IELGVP SDP DGP+
Sbjct: 4 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPI 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQA+ R+LA GT +A+L ML+EV P++SCP+ L +YY PI+ R + + G+
Sbjct: 64 IQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMK----EAGVH 119
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GL+VPD+P SL EA N +ELVL TTP P DRMK I +ASEGFVYLVS GVTG
Sbjct: 120 GLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTG 179
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
RA+++ V++L++E+K+ + KPVAVGFGISKPEHV+Q+A WGADGVI+GSAMV+ LGEA
Sbjct: 180 PRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEA 239
Query: 290 QSPEEGLKELEKFAKSLKSAL 310
SP++GL+ LE++A+ +K+AL
Sbjct: 240 ASPKQGLRRLEEYARGMKNAL 260
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Score = 231 bits (589), Expect = 1e-75
Identities = 97/258 (37%), Positives = 149/258 (57%), Gaps = 3/258 (1%)
Query: 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQ 111
E F + + +G+ ALIPY+TAG P +A++ + +D++E+G+PYSDPL DGPVIQ
Sbjct: 5 EAFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQ 63
Query: 112 AAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGL 171
A+ +L +G + L +++EV P+ L TY NP+L G + F + G G+
Sbjct: 64 RASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGV 123
Query: 172 VVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR 231
++PD+P +E L + A + +E V PT+ R+ +V + GFVY VS GVTG R
Sbjct: 124 ILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMR 183
Query: 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS 291
+ V+ L+R IK + PVAVGFG+S Q ADGV+VGSA+V+ L E +S
Sbjct: 184 ERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGRS 241
Query: 292 PEEGLKELEKFAKSLKSA 309
L+E+ + + L++
Sbjct: 242 LAPLLQEIRQGLQRLEAN 259
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 214 bits (545), Expect = 2e-69
Identities = 106/248 (42%), Positives = 144/248 (58%), Gaps = 5/248 (2%)
Query: 59 KQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL 118
K G +LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L
Sbjct: 3 KDG--SLIPYLTAGDPDKQSTLNFLLALDE-YAGAIELGIPFSDPIADGKTIQESHYRAL 59
Query: 119 ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL 178
G ++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+
Sbjct: 60 KNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPV 119
Query: 179 EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHV 238
+ + A + I+ V P TP +R+K I + + GFVYLVS G TGAR I
Sbjct: 120 FHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTA 179
Query: 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKE 298
LLR K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE E +
Sbjct: 180 YDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE--KGREATEF 237
Query: 299 LEKFAKSL 306
L+K + L
Sbjct: 238 LKKKVEEL 245
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Score = 202 bits (514), Expect = 1e-64
Identities = 89/262 (33%), Positives = 140/262 (53%), Gaps = 2/262 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
F +L + + A +P++T GDP + + + + L G+D +ELGVP+SDPLADGP
Sbjct: 4 YENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A R+ A G ML + + + PI L Y N + G+D F + +G+
Sbjct: 64 IQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
++V DVP+EE+ ++ A+++ I + P D ++ + G+ YL+S GVT
Sbjct: 124 DSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVT 183
Query: 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
GA + + L+ ++KE P GFGIS PE V GA G I GSA+VK++ +
Sbjct: 184 GAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEK 243
Query: 289 A-QSPEEGLKELEKFAKSLKSA 309
SP++ L EL F ++K+A
Sbjct: 244 NLASPKQMLAELRSFVSAMKAA 265
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 168 bits (427), Expect = 7e-52
Identities = 27/226 (11%), Positives = 63/226 (27%), Gaps = 14/226 (6%)
Query: 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128
IT DPD + T E +K + G+D + + + + ++
Sbjct: 9 ITKLDPDRTNTDEIIKAVADSGTDAVMIS--GTQNVTYEKART---LIEKVSQYGLPIVV 63
Query: 129 SMLKEVV----PQMSCPIALFTYYNPILKRGVDNFMST-VRDIGIRGLVVPDVPLEETES 183
+ + G + + + + + E
Sbjct: 64 EPSDPSNVVYDVDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEG 123
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ + V T + + L + + + G+ + +
Sbjct: 124 YIVLNPDSAVARV---TKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAE 180
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
K + G GI E +++ AD +IVG+ + + +A
Sbjct: 181 VKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEKGIDA 225
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Score = 138 bits (349), Expect = 2e-40
Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 36/237 (15%)
Query: 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
DP+ E L++L G+D + +G SD + + V++ +
Sbjct: 15 DPNKDLPDEQLEILCESGTDAVIIG--GSDGVTEDNVLRMMSKVR--------------- 57
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR------------GLVVPDVPLEE 180
+ P L + G D + + +EE
Sbjct: 58 ----RFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEE 113
Query: 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT 240
+ + T + + A + + + + + G ++
Sbjct: 114 IVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSG--VLGDIEA 171
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 297
+ + T + G GI E +Q A AD ++VG+A+ + A +K
Sbjct: 172 VKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFDRALKTVAAVK 227
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 69.1 bits (168), Expect = 2e-14
Identities = 22/202 (10%), Positives = 58/202 (28%), Gaps = 10/202 (4%)
Query: 93 IIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS--MLKEVVPQMSCPI-ALFTYYN 149
I+ +PL ++ A + G + + + + P+ +
Sbjct: 8 IVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDY 67
Query: 150 PILKRGVDNFMSTVRDIGIRG--LVVPDVPL-----EETESLQKEAMKNKIELVLFTTPT 202
+ V ++ ++ D L E + L + + +
Sbjct: 68 DHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA 127
Query: 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP 262
T + A + + + + L+++ +S V + P
Sbjct: 128 TVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITP 187
Query: 263 EHVQQVAGWGADGVIVGSAMVK 284
+ ++V G +VG A+ +
Sbjct: 188 DMYKRVMDLGVHCSVVGGAITR 209
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Score = 54.4 bits (130), Expect = 2e-09
Identities = 29/230 (12%), Positives = 58/230 (25%), Gaps = 34/230 (14%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
D T A + DIIE+G + +G + LK
Sbjct: 9 DNQTMDSAYETTRLIAEEVDIIEVGTILC--VGEGV-----------------RAVRDLK 49
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV-PDVPLEETESLQKEAMKN 191
+ P + + V + + A +
Sbjct: 50 ALYPHKIVLADAKIADAG------KILSRMCFEANADWVTVICCADINTAKGALDVAKEF 103
Query: 192 KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK 251
++ + T ++ + +A G V A ++ + + S
Sbjct: 104 NGDVQIELTGYWTWEQAQQWRDAGIGQVVYHR--SRDAQAAGVAWGEADITAIKRLSDMG 161
Query: 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
G E + G I G ++ A SP E ++ ++
Sbjct: 162 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRD----AASPVEAARQFKR 207
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 48.7 bits (115), Expect = 2e-07
Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 17/229 (7%)
Query: 80 AEALKLLDSCGSDIIELGVPYSDPLA--DGPVIQAAATRSLARGTNFNAI--LSMLKEVV 135
E LK G I+ +PL G ++ A + G + +KE+
Sbjct: 8 MEQLK-----GGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQ 62
Query: 136 PQMSCPI----ALFTYYNPILKRGVDNFMSTVRDIG--IRGLVVPDVPLEETESLQKEAM 189
PI + + + + + + +
Sbjct: 63 AITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIR 122
Query: 190 KNKIELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIKES 248
+ K + + + +V G ++ + G T +G L E
Sbjct: 123 QVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPD-VALIEALCK 181
Query: 249 STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 297
+ V I PE +++ G G++VG A+ + A+ E LK
Sbjct: 182 AGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPKEIAERFIEALK 230
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Score = 45.8 bits (107), Expect = 2e-06
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 5/124 (4%)
Query: 177 PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA-RASIS 235
L + E+ + A + + ++ + + + A+ +A
Sbjct: 101 ILADLEAAIRRAEEVGLMTMVCSNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPE 160
Query: 236 GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG 295
T+ K + V G GIS E V++ G GV++ S + K A+ PE+
Sbjct: 161 VITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTK----AKDPEKA 216
Query: 296 LKEL 299
+ +L
Sbjct: 217 IWDL 220
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Score = 44.5 bits (104), Expect = 5e-06
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 8/133 (6%)
Query: 178 LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS-SIGVTGARASISG 236
L + L +A +++V+ + A+ + G +R
Sbjct: 100 LNDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEA 159
Query: 237 HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 296
V+T+ + V G GI + V G GV++ SA VK A+ P
Sbjct: 160 IVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVK----AKDPY--- 212
Query: 297 KELEKFAKSLKSA 309
++ + AK L
Sbjct: 213 AKIVELAKPLSEL 225
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 23/225 (10%)
Query: 92 DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE--VVPQMSCPIALFTYYN 149
D +ELG YS+ D V R T + + ++ + + I F +
Sbjct: 31 DPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETAS 90
Query: 150 PILKRGVDNFM---STVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206
++ RG D + V + + + + + +A + E ++FT
Sbjct: 91 ELILRGADKVSINTAAVENPSLITQIAQTFG-SQAVVVAIDAKRVDGEFMVFTYSGKKNT 149
Query: 207 RMKAIVEASEGFVYLVSSIGVTGARASI------SGHVQTLLREIKESSTKPVAVGFGIS 260
+ E I +T SI SG+ ++R ++ +T P+ G
Sbjct: 150 GILLRDWVVEVEKRGAGEILLT----SIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAG 205
Query: 261 KPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305
K EH + GAD + S E ++EL+++ K
Sbjct: 206 KMEHFLEAFLAGADAALAASVFH-------FREIDVRELKEYLKK 243
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 43.1 bits (101), Expect = 2e-05
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 199 TTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFG 258
T K + E G + L++SI G G+ L+R + +S PV G
Sbjct: 150 ATGLDAVKWAKEVEELGAGEI-LLTSIDRDGTG---LGYDVELIRRVADSVRIPVIASGG 205
Query: 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305
+ EH + A GAD V+ S + +++++ K
Sbjct: 206 AGRVEHFYEAAAAGADAVLAASLFH-------FRVLSIAQVKRYLKE 245
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Score = 39.0 bits (90), Expect = 3e-04
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279
L++S+ G + G+ L R + E+ PV G + EH + GA+ +
Sbjct: 168 ILLTSMDRDGTK---EGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAA 224
Query: 280 SAMVKLLGEAQSPEEGLKELEKFAKS 305
S E + +L+++
Sbjct: 225 SVFH-------FGEIPIPKLKRYLAE 243
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 36.9 bits (85), Expect = 0.002
Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 36/238 (15%)
Query: 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM---- 130
+ S E +K ++ G D I + V DG F +++
Sbjct: 21 NFSKLGEQVKAIEQAGCDWIHVDV------MDG---------------RFVPNITIGPLV 59
Query: 131 LKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK 190
+ + P P+ + +R D + + + + L T + K
Sbjct: 60 VDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSL-G 118
Query: 191 NKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT---LLREIKE 247
K +VL P TP ++ +++A + + + + G G S + +
Sbjct: 119 AKAGVVL--NPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAER 176
Query: 248 SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305
+ V G+ P++ +V GA+ ++ GSA+ A E +K ++ +
Sbjct: 177 GLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG----APDYAEAIKGIKTSKRP 229
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Score = 36.4 bits (83), Expect = 0.002
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW---GADGVIVGSA 281
G LL+ + ++ +PV G+S + ++ +AG G +G IVG A
Sbjct: 174 QGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 223
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 100.0 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 100.0 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 100.0 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 100.0 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 100.0 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 99.97 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.79 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 99.6 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 99.6 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.6 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 99.55 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 99.52 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 99.52 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 99.5 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 99.46 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 99.45 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.36 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.3 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.24 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 99.14 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 99.13 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 99.1 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 99.1 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.1 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.08 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 99.03 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 99.0 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.97 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 98.8 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 98.74 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 98.74 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.72 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 98.72 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 98.67 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 98.51 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 98.46 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.44 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 98.43 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 98.37 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 98.36 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 98.36 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 98.35 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 98.31 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.26 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.21 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 98.2 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 98.14 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 98.04 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 97.96 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 97.84 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 97.81 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 97.78 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 97.76 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 97.68 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 97.64 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.64 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.63 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 97.61 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.51 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 97.47 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 97.46 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.45 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.45 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 97.45 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 97.44 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 97.44 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 97.43 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 97.41 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.39 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 97.39 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 97.39 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 97.38 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 97.33 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 97.3 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 97.25 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 97.23 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 97.22 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 97.2 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 97.17 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 97.16 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.13 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 97.11 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 97.09 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 97.05 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 97.03 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 96.99 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 96.97 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 96.89 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 96.82 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 96.7 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 96.68 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 96.65 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 96.63 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 96.62 | |
| d1b5ta_ | 275 | Methylenetetrahydrofolate reductase {Escherichia c | 96.61 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 96.61 | |
| d1vqta1 | 198 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.6 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 96.6 | |
| d1trea_ | 255 | Triosephosphate isomerase {Escherichia coli [TaxId | 96.59 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 96.56 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 96.49 | |
| d1b5ta_ | 275 | Methylenetetrahydrofolate reductase {Escherichia c | 96.39 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 96.36 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 96.32 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 96.29 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 96.24 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 96.17 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 96.06 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 96.03 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 95.91 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 95.9 | |
| d1n55a_ | 249 | Triosephosphate isomerase {Leishmania mexicana [Ta | 95.89 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 95.85 | |
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 95.81 | |
| d1aw1a_ | 255 | Triosephosphate isomerase {Vibrio marinus [TaxId: | 95.79 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 95.75 | |
| d1mo0a_ | 257 | Triosephosphate isomerase {Nematode (Caenorhabditi | 95.7 | |
| d1o5xa_ | 246 | Triosephosphate isomerase {Plasmodium falciparum [ | 95.66 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 95.65 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 95.63 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 95.6 | |
| d1kv5a_ | 249 | Triosephosphate isomerase {Trypanosoma brucei [Tax | 95.58 | |
| d2c1ha1 | 319 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 95.56 | |
| d2btma_ | 251 | Triosephosphate isomerase {Bacillus stearothermoph | 95.46 | |
| d1h7na_ | 340 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 95.44 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 95.36 | |
| d1l6sa_ | 323 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 95.35 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 95.18 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 95.18 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 95.09 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 95.08 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 95.05 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 95.05 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 95.04 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 94.97 | |
| d1v93a_ | 292 | Methylenetetrahydrofolate reductase {Thermus therm | 94.76 | |
| d1r2ra_ | 246 | Triosephosphate isomerase {Rabbit (Oryctolagus cun | 94.76 | |
| d1dqwa_ | 267 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 94.72 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 94.7 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 94.69 | |
| d1v93a_ | 292 | Methylenetetrahydrofolate reductase {Thermus therm | 94.67 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 94.66 | |
| d1m6ja_ | 260 | Triosephosphate isomerase {Entamoeba histolytica [ | 94.64 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 94.62 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 94.59 | |
| d1sr9a2 | 310 | 2-isopropylmalate synthase LeuA, catalytic domain | 94.58 | |
| d1s8na_ | 190 | Probable two-component system transcriptional regu | 94.56 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 94.53 | |
| d1neya_ | 247 | Triosephosphate isomerase {Baker's yeast (Saccharo | 94.45 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 94.45 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 94.36 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 94.19 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 94.12 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 94.08 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 94.06 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 93.95 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 93.92 | |
| d1s8na_ | 190 | Probable two-component system transcriptional regu | 93.91 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 93.85 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 93.8 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 93.76 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 93.67 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 93.56 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 93.42 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 93.4 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 93.31 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 93.22 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 93.16 | |
| d1b9ba_ | 252 | Triosephosphate isomerase {Thermotoga maritima [Ta | 93.12 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 93.08 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 93.05 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 93.05 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 92.99 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 92.98 | |
| d1pv8a_ | 320 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 92.88 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 92.84 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 92.78 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 92.63 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 92.61 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 92.53 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 92.51 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 92.3 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 92.29 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 92.26 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 92.24 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 91.95 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 91.93 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 91.84 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 91.83 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 91.81 | |
| d1gzga_ | 329 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 91.72 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 91.69 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 91.67 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 91.65 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 91.64 | |
| d1k66a_ | 149 | Response regulator for cyanobacterial phytochrome | 91.63 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 91.45 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 91.42 | |
| d1xrsb1 | 160 | D-lysine 5,6-aminomutase beta subunit KamE, C-term | 91.23 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 91.11 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 91.1 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 91.06 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 91.01 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 90.98 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 90.96 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 90.89 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 90.85 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 90.78 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 90.75 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 90.68 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 90.58 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 90.58 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 90.5 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 90.47 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 90.41 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 90.4 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 90.21 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 90.13 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 90.08 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 90.08 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 90.02 | |
| d1l6sa_ | 323 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 89.86 | |
| d3bula2 | 156 | Methionine synthase, C-terminal domain {Escherichi | 89.7 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 89.32 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 89.21 | |
| d1w25a2 | 153 | Response regulator PleD, receiver domain {Caulobac | 89.14 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 89.09 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 88.99 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 88.84 | |
| d2ffca1 | 332 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 88.81 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 88.79 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 88.73 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 88.68 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 88.59 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 88.42 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 88.31 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 88.24 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 88.2 | |
| d1w25a2 | 153 | Response regulator PleD, receiver domain {Caulobac | 87.98 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 87.78 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 87.75 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 87.74 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 87.7 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 87.51 | |
| d1sfla_ | 236 | Type I 3-dehydroquinate dehydratase {Staphylococcu | 87.5 | |
| d2c1ha1 | 319 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 87.35 | |
| d1vlia2 | 295 | Spore coat polysaccharide biosynthesis protein Sps | 86.84 | |
| d1h7na_ | 340 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 86.79 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 86.71 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 86.71 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 86.41 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 86.39 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 86.29 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 86.27 | |
| d1k66a_ | 149 | Response regulator for cyanobacterial phytochrome | 86.26 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 86.17 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 86.06 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 85.64 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 85.13 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 85.12 | |
| d1gzga_ | 329 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 84.7 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 84.64 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 84.24 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 84.1 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 84.1 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 83.94 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 83.84 | |
| d1sfla_ | 236 | Type I 3-dehydroquinate dehydratase {Staphylococcu | 83.61 | |
| d1pv8a_ | 320 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 83.61 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 83.49 | |
| d7reqb2 | 163 | Methylmalonyl-CoA mutase beta subunit, C-terminal | 83.46 | |
| d1u83a_ | 249 | (2r)-phospho-3-sulfolactate synthase ComA {Bacillu | 82.65 | |
| d1a2oa1 | 140 | Methylesterase CheB, N-terminal domain {Salmonella | 82.51 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 82.4 | |
| d7reqb2 | 163 | Methylmalonyl-CoA mutase beta subunit, C-terminal | 81.95 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 81.8 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 81.55 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 81.49 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 81.23 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 81.2 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 81.12 | |
| d2fdsa1 | 324 | Protozoan orotidine monophosphate decarboxylase {P | 80.29 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 80.1 |
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-76 Score=547.52 Aligned_cols=265 Identities=34% Similarity=0.615 Sum_probs=254.0
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
||||++.|+++++++|++||+|+|+||||++++.++++.|+++|||+||||+|||||+||||+||+|+.|||++|+++++
T Consensus 1 M~ri~~~f~~lk~~~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~ 80 (267)
T d1qopa_ 1 MERYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQ 80 (267)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHH
T ss_pred CchHHHHHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 127 ILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 127 ~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
+|++++++|++ .++|+++|+|||++++||.++|++.|+++|+||+|+||||+||..++.+.++++|++.|++++|+|++
T Consensus 81 ~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~ 160 (267)
T d1qopa_ 81 CFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADD 160 (267)
T ss_dssp HHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCH
T ss_pred hhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccH
Confidence 99999999987 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+|++++++.+.||+|++|..|+||.+...+.++.++++++|+.+++|++|||||+++||+++++++|||||||||||++.
T Consensus 161 ~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk~ 240 (267)
T d1qopa_ 161 DLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI 240 (267)
T ss_dssp HHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECHHHHHH
Confidence 99999999999999999999999999988888999999999999999999999999999999888999999999999999
Q ss_pred hhhcC-CchhHHHHHHHHHHHHHhhCC
Q 021527 286 LGEAQ-SPEEGLKELEKFAKSLKSALP 311 (311)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~l~~~~~ 311 (311)
+++.. ++++.++++.+|+++||+++.
T Consensus 241 i~~~~~~~~~~~~~i~~~v~~lk~a~~ 267 (267)
T d1qopa_ 241 IEKNLASPKQMLAELRSFVSAMKAASR 267 (267)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHhhC
Confidence 98753 356779999999999999863
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.8e-75 Score=537.86 Aligned_cols=259 Identities=37% Similarity=0.636 Sum_probs=230.0
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|++++ .|.++|++||++||+|+|+||||.++++++++.|++ |||+||||+|||||+||||+||+|+.|||++|+++++
T Consensus 1 M~~~e-~F~~~k~~~~~ali~yitaG~P~~~~~~~~l~~l~~-gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~ 78 (271)
T d1ujpa_ 1 MTTLE-AFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQG 78 (271)
T ss_dssp CCHHH-HHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHGG-GCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHH-HHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHc-CCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhh
Confidence 78885 699999999999999999999999999999999976 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
+|++++++|++.++|+++|+|||++++||.++|+++|+++|+||+|+||||+||..++.+.++++|++.|++++|+|+++
T Consensus 79 ~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~e 158 (271)
T d1ujpa_ 79 ALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDA 158 (271)
T ss_dssp HHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHH
T ss_pred HHHHHHHHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchH
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|++++++.+.||+|+||+.|+||.+..++.++.++++++|+.+++|++|||||+++||++++ .|||||||||+|++.+
T Consensus 159 Ri~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i 236 (271)
T d1ujpa_ 159 RIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRAL 236 (271)
T ss_dssp HHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHH
T ss_pred HHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHHHH
Confidence 99999999999999999999999998888889999999999999999999999999999876 4799999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHhh
Q 021527 287 GEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
++..+....++++++++++++++
T Consensus 237 ~e~~~~~~~~~~i~~~l~~lk~~ 259 (271)
T d1ujpa_ 237 EEGRSLAPLLQEIRQGLQRLEAN 259 (271)
T ss_dssp HTTCCHHHHHHHHHHHHBCC---
T ss_pred HhCCCHHHHHHHHHHHHHHHhhc
Confidence 87655666788899999888764
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=1.9e-73 Score=525.14 Aligned_cols=259 Identities=59% Similarity=1.021 Sum_probs=249.4
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
++|+++|.+++++||++||+|+++||||.+.+.++++.|+++|||+||||+|||||++|||+||+|+.|||++|++++++
T Consensus 2 ~~i~~~f~~~~~~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~ 81 (261)
T d1rd5a_ 2 RPVSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAV 81 (261)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHH
T ss_pred chHHHHHHHHHHcCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHH
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDR 207 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~er 207 (311)
|++++++|++.++|+++|+|||+++.+|.++ ++++|+||+|+||||+||..++.+.++++|++.|++++|+|+++|
T Consensus 82 ~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~----~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~R 157 (261)
T d1rd5a_ 82 LEMLREVTPELSCPVVLLSYYKPIMFRSLAK----MKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDR 157 (261)
T ss_dssp HHHHHHHGGGCSSCEEEECCSHHHHSCCTHH----HHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHH
T ss_pred hhhhhcccccccCceeeeeeecchhhHHHHH----HHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhH
Confidence 9999999999999999999999999987655 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
++++++.+.||||++|+.|+||.+...+.++.++++++|+.+++||+|||||+++||++++.++|||||||||+|++.++
T Consensus 158 i~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~ 237 (261)
T d1rd5a_ 158 MKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLG 237 (261)
T ss_dssp HHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred HHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 99999999999999999999999998988999999999999999999999999999999999999999999999999998
Q ss_pred hcCCchhHHHHHHHHHHHHHhhC
Q 021527 288 EAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
+..++++.++.+.+|+++||+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~lk~al 260 (261)
T d1rd5a_ 238 EAASPKQGLRRLEEYARGMKNAL 260 (261)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhh
Confidence 76666778999999999999885
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.5e-71 Score=508.69 Aligned_cols=243 Identities=43% Similarity=0.692 Sum_probs=225.0
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
|++||+|+|+||||++++.+++++|++ |+|+||||+|||||+||||+||+|+.|||++|++++++|++++++|++.++|
T Consensus 4 ~~ali~y~taG~P~~~~s~~~l~~l~~-g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~p 82 (248)
T d1geqa_ 4 DGSLIPYLTAGDPDKQSTLNFLLALDE-YAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTP 82 (248)
T ss_dssp TTEEEEEEETTSSCHHHHHHHHHHHGG-GBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCC
T ss_pred CCceEEEEcCcCCCHHHHHHHHHHHHc-CCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCc
Confidence 689999999999999999999999965 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+++|+|||++++||.++|+++|+++|+||+|+||||+||..++.+.++++|++.|++++|+|+++|++++++.+.||+|+
T Consensus 83 ivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~ 162 (248)
T d1geqa_ 83 IVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYL 162 (248)
T ss_dssp EEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEE
T ss_pred EEEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~ 301 (311)
+|+.|+||.+..++..+.++++++|+.+++|++|||||+++||++++.+.|||||||||+|++.+++.. .+..+.+.+
T Consensus 163 vs~~GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~~i~~~~--~~~~~~l~~ 240 (248)
T d1geqa_ 163 VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKG--REATEFLKK 240 (248)
T ss_dssp ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHG--GGCHHHHHH
T ss_pred EecccccccchhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEECHHHHHHHHHhC--chHHHHHHH
Confidence 999999999999998999999999999999999999999999999999889999999999999997632 334667788
Q ss_pred HHHHHH
Q 021527 302 FAKSLK 307 (311)
Q Consensus 302 ~~~~l~ 307 (311)
++++|-
T Consensus 241 ~~~~l~ 246 (248)
T d1geqa_ 241 KVEELL 246 (248)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888774
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.9e-36 Score=268.40 Aligned_cols=211 Identities=14% Similarity=0.053 Sum_probs=150.3
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH--HHHhhccC--CCcE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM--LKEVVPQM--SCPI 142 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~--i~~ir~~~--~iPi 142 (311)
-|+|.+|||.+.+.+.++.|.++|+|+|||| ||||++||+++|...... ..++..++.. ...+++.. -++.
T Consensus 7 ~hit~~DPd~~~t~~~i~~l~~~GaD~IElG--fSdpi~~g~~~~~i~~~~---~~~lp~~~~~~~~~~~~~~~d~~~~~ 81 (231)
T d2f6ua1 7 RHITKLDPDRTNTDEIIKAVADSGTDAVMIS--GTQNVTYEKARTLIEKVS---QYGLPIVVEPSDPSNVVYDVDYLFVP 81 (231)
T ss_dssp CEEEEECTTSCCCHHHHHHHHTTTCSEEEEC--CCTTCCHHHHHHHHHHHT---TSCCCEEECCSSCCCCCCCSSEEEEE
T ss_pred eeeeeECCCCccHHHHHHHHHHcCCCEEEEc--CCCccccccHHHHHHHHH---hCCCCeEEEecchhhcccccccceee
Confidence 4899999999999999999999999999999 999999999988654322 2222111110 11112221 1355
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcE-EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRG-LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadG-viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
.+|+|+|++|.+|.+.|...+...+.++ +..+++|.++.+++.. .+....+.+++|.++.+|++.+++.+.+|+|+
T Consensus 82 ~~m~~~n~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~---~~~~~~~~~i~~~~~~~~~~~i~~~a~~~~y~ 158 (231)
T d2f6ua1 82 TVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIV---LNPDSAVARVTKALCNIDKELAASYALVGEKL 158 (231)
T ss_dssp EETTBSBGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEE---CCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHT
T ss_pred hhhccCChhhhhhhHHHHHHHHHhcccceeecCCCchhhhhHHHH---hCCCCCeeEeccCCCCCcHHHHHHHHHhhhhh
Confidence 6788999999999998888766655543 3333444332222211 11222344556666666777788888999999
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
++..|+||.+...........+..|..+++|++|||||+|+||++++.+. ||||||||+|++..
T Consensus 159 vs~~gvtg~~~~~~~~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~~-ADgvIVGSaive~~ 222 (231)
T d2f6ua1 159 FNLPIIYIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLRY-ADTIIVGNVIYEKG 222 (231)
T ss_dssp TCCSEEEEECTTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHHH-SSEEEECHHHHHHC
T ss_pred cceEEEEEecccccchhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHhc-CCEEEEChHHhccc
Confidence 99999999887766665554444455568999999999999999999985 99999999998754
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=99.97 E-value=1.2e-35 Score=267.67 Aligned_cols=189 Identities=19% Similarity=0.180 Sum_probs=134.8
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
|+|.=|||++.+.+.++.|.++|+|+|||| ||||++|||+||.+ ++++..++|+++|+|
T Consensus 10 h~~~iDPd~~~t~e~i~~l~e~GaDiIElG--fSDpiadg~viq~~-------------------~~~~~~~~p~il~~~ 68 (229)
T d1viza_ 10 HVFKLDPNKDLPDEQLEILCESGTDAVIIG--GSDGVTEDNVLRMM-------------------SKVRRFLVPCVLEVS 68 (229)
T ss_dssp EEEEECTTSCCCHHHHHHHHTSCCSEEEEC--C----CHHHHHHHH-------------------HHHTTSSSCEEEECS
T ss_pred eeeEeCCCCCCHHHHHHHHHHcCCCEEEEc--CCCcccccHHHHHH-------------------HHhhcCCCCEEEEec
Confidence 566669999999999999999999999999 99999999999943 223457899999999
Q ss_pred CcchhccCHHHHHHHHHHcCCc------------EEEe----cCCChhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHH
Q 021527 148 YNPILKRGVDNFMSTVRDIGIR------------GLVV----PDVPLEETESLQKEAMKNKIELVLFT--TPTTPTDRMK 209 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGad------------Gvii----pDlp~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~ 209 (311)
+|+++.+|.+.|+..+...|.| +.+. +|+|.++... +.+++.+...+. +++++.+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~de~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 144 (229)
T d1viza_ 69 AIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYC----IANPDCKAAALTEADADLNMDDIV 144 (229)
T ss_dssp CGGGCCSCCSEEEEEEETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEE----ECCTTSHHHHHTTBCCCCCHHHHH
T ss_pred ccceeecccchhhHHHHHcccCHHHHhhhHHhhhccccCCCCcccCHHHHHH----HHhcccceeeeeccCCCCCHHHHH
Confidence 9999988887777666666655 2233 3444444222 223333323332 3344456666
Q ss_pred HHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 210 AIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 210 ~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.++..+.+|.|+++..++||... +. +.+..+++. +++|++|||||+|+||++++.+ |||||||||+|++.++
T Consensus 145 ~~a~~~~~~~~~~~~~~~tg~~~--~~---~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~~-~ADgVVVGSAiv~~ie 217 (229)
T d1viza_ 145 AYARVSELLQLPIFYLEYSGVLG--DI---EAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFD 217 (229)
T ss_dssp HHHHHHHHTTCSEEEEECTTSCC--CH---HHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHCHH
T ss_pred HHHhhccceeEEEEEEeccCccc--cc---hhHHHHHhhccCcceEEEcccCCHHHHHHHHc-CCCEEEECHHHHhhHH
Confidence 66666777878777666777643 33 345555554 5799999999999999999995 6999999999998664
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.79 E-value=1.3e-18 Score=151.89 Aligned_cols=191 Identities=10% Similarity=0.094 Sum_probs=137.0
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH--HHHHHHHHhhccCCCcEEEEe-c--Cc-chhccCHHHHHHHHHHc
Q 021527 93 IIELGVPYSDPLADGPVIQAAATRSLARGTNFN--AILSMLKEVVPQMSCPIALFT-Y--YN-PILKRGVDNFMSTVRDI 166 (311)
Q Consensus 93 ~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~--~~~~~i~~ir~~~~iPiilm~-Y--~n-~i~~~g~~~fi~~~~~a 166 (311)
++++..|+.+|++|++++++.+..+...|...- ...+.++++|+..+.|+.... + .| .........+.+.+.++
T Consensus 8 ivs~Q~~~~~Pm~~~~~~a~~A~aa~~~Ga~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 87 (222)
T d1y0ea_ 8 IVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIES 87 (222)
T ss_dssp EEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHH
T ss_pred EEEEecCCCCCCCCcHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHc
Confidence 467788999999999999999999998884210 123566777777888876442 2 22 22334446778888899
Q ss_pred CCcEEEecCCCh----hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCC-CCchHHHH
Q 021527 167 GIRGLVVPDVPL----EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS-ISGHVQTL 241 (311)
Q Consensus 167 GadGviipDlp~----ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~-~~~~~~~~ 241 (311)
|+|.+.++.... +...++.+.+++++...+...++.+..++.+.. +..-.++++....+.++.... ......+.
T Consensus 88 gad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~-~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~ 166 (222)
T d1y0ea_ 88 QCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAA-RLGFDYIGTTLHGYTSYTQGQLLYQNDFQF 166 (222)
T ss_dssp TCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HTTCSEEECTTTTSSTTSTTCCTTHHHHHH
T ss_pred CCCEEEeeccccccccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHH-HcCCCeEEEeccCCcccccCccchhhHHHH
Confidence 999998875332 346778888899998888888888877665433 333333333222222222222 22334678
Q ss_pred HHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 242 LREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 242 l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.++++.+++||+++|||+|++|+.+++++|||||+|||+|.|
T Consensus 167 i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~r 209 (222)
T d1y0ea_ 167 LKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (222)
T ss_dssp HHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcC
Confidence 9999999999999999999999999999999999999999986
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.60 E-value=1.6e-15 Score=134.34 Aligned_cols=183 Identities=10% Similarity=0.188 Sum_probs=135.5
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcchh
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNPIL 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~i~ 152 (311)
|.....+.++.+.++|+|.+|++ +.||.++... +.. ++.++.+++.+++| +.+|+-
T Consensus 12 d~~~l~~~i~~~~~~g~d~iHiD------imDg~Fvpn~-------s~g----~~~i~~i~~~t~~~~dvHLMv~----- 69 (217)
T d2flia1 12 DYANFASELARIEETDAEYVHID------IMDGQFVPNI-------SFG----ADVVASMRKHSKLVFDCHLMVV----- 69 (217)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEE------EEBSSSSSCB-------CBC----HHHHHHHHTTCCSEEEEEEESS-----
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE------cccCcCCCcc-------ccC----HHHHHHHHhcCCCceEeEEEec-----
Confidence 44677889999999999999998 6676554321 112 45788888888887 577762
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~ 232 (311)
.++++++.+.++|+|-++++=-..++..++.+.++++|.+.-+-+.|.|+.+.++.+... -.++-++++....+.+
T Consensus 70 --~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~-id~vliM~V~pG~~Gq- 145 (217)
T d2flia1 70 --DPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDL-VDQVLIMTVNPGFGGQ- 145 (217)
T ss_dssp --SGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTT-CSEEEEESSCTTCSSC-
T ss_pred --CHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhh-cCEEEEEEEcCccccc-
Confidence 245688999999999999862112345678889999999998999999998776655442 3455556654444433
Q ss_pred CCCchHHHHHHHHhhc-----CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 233 SISGHVQTLLREIKES-----STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 233 ~~~~~~~~~l~~vk~~-----~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+...+.++++|+. .+++|.|.+||+ .+++..+.++|||.+|+||++.+
T Consensus 146 ~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif~ 201 (217)
T d2flia1 146 AFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFK 201 (217)
T ss_dssp CCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred ccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHhC
Confidence 3445556677777653 367899999998 59999999999999999999997
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=99.60 E-value=4.5e-15 Score=131.52 Aligned_cols=198 Identities=16% Similarity=0.295 Sum_probs=145.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcchh
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNPIL 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~i~ 152 (311)
|.....+.++.+.++|+|.+|++ +.||-++..- ++. ++.++.+++.++.| +.+|+-
T Consensus 12 d~~~l~~ei~~l~~~~~d~iHiD------imDg~Fvpn~-------t~~----~~~i~~i~~~~~~~~dvHLMv~----- 69 (220)
T d1h1ya_ 12 DFANLAAEADRMVRLGADWLHMD------IMDGHFVPNL-------TIG----APVIQSLRKHTKAYLDCHLMVT----- 69 (220)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEE------EEBSSSSSCB-------CBC----HHHHHHHHTTCCSEEEEEEESS-----
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe------eecCcccccc-------ccC----chhhhhhhhhcchhhhhHHHhc-----
Confidence 34678899999999999999998 7888654321 122 46888888888887 566653
Q ss_pred ccCHHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC--ceEEEEecC-Ccc
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE--GFVYLVSSI-GVT 228 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~--gfiY~vs~~-G~T 228 (311)
..+++++.+.++|++-+.++ ........++.+.+++.|.+.-+.+.|.|+.+.++.+....+ .++.++++. |..
T Consensus 70 --~p~~~i~~~~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~PG~~ 147 (220)
T d1h1ya_ 70 --NPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFG 147 (220)
T ss_dssp --CGGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCS
T ss_pred --chhhhhHHhhhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceEEEEecCCCCc
Confidence 24568888999999999996 111123556788899999998888999999887776665433 344556654 444
Q ss_pred CCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 229 GARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
|+ .+.+...+.++++|+. .+.++.|.+||+. +++..+.++|||.+|+||++.+. .++.+.++++++-+
T Consensus 148 GQ--~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~-~~i~~l~~aGad~~V~GS~if~~----~d~~~~i~~lr~~~ 216 (220)
T d1h1ya_ 148 GQ--KFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASAGANCIVAGSSIFGA----AEPGEVISALRKSV 216 (220)
T ss_dssp SC--CCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHHTCCEEEESHHHHTS----SCHHHHHHHHHHHH
T ss_pred cc--ccchhhhHHHHHHHhcCCCceEEEEecCCH-HHHHHHHHCCCCEEEECHHHHCC----CCHHHHHHHHHHHH
Confidence 43 4556677889999885 4789999999984 99999999999999999999972 23444555555443
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.60 E-value=1.6e-14 Score=126.51 Aligned_cols=187 Identities=16% Similarity=0.169 Sum_probs=121.8
Q ss_pred EEEEE--eCCCC----ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC
Q 021527 65 LIPYI--TAGDP----DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM 138 (311)
Q Consensus 65 li~yi--~~G~P----~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~ 138 (311)
+|... .+|.| +.+...+.+++..++|++.|.++ + .+.++++|+.+
T Consensus 15 livs~q~~~~~p~~~~~~~~v~~~A~a~~~~Ga~~i~~~---------~--------------------~~~~~~ir~~~ 65 (230)
T d1yxya1 15 IIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN---------S--------------------VRDIKEIQAIT 65 (230)
T ss_dssp CEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE---------S--------------------HHHHHHHHTTC
T ss_pred eEEEEecCCCCcccCCChHHHHHHHHHHHHCCCeEEEec---------C--------------------hhhHHHHHhhh
Confidence 55442 44544 44567778888888888888885 1 13566788888
Q ss_pred CCcEEEEecC----cchhccCHHHHHHHHHHcCCcEEEec--CCChh---hHHHHHHHHHHcCCCeEEEeCCCChHHHHH
Q 021527 139 SCPIALFTYY----NPILKRGVDNFMSTVRDIGIRGLVVP--DVPLE---ETESLQKEAMKNKIELVLFTTPTTPTDRMK 209 (311)
Q Consensus 139 ~iPiilm~Y~----n~i~~~g~~~fi~~~~~aGadGviip--Dlp~e---e~~~~~~~~~~~gi~~I~lisp~t~~eri~ 209 (311)
+.|+...... +..+......+...+..+|+|.+.+. +.+.+ +..++.+.++.+....+.+....|.++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~- 144 (230)
T d1yxya1 66 DLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGL- 144 (230)
T ss_dssp CSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHH-
T ss_pred hcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEecccccccchhhHHHHHHHHHhcCCCceEecCCCCHHHHH-
Confidence 9998766422 12333444677888999999987664 33322 34555555666555555555555655443
Q ss_pred HHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 210 AIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 210 ~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
...+ .|+.|+. +..|.++.......... .+.++++..++||++++||+|++|+.+++++|||||+|||+|++
T Consensus 145 ~a~~--~Gad~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~~ 217 (230)
T d1yxya1 145 VAHQ--AGIDFVGTTLSGYTPYSRQEAGPDV-ALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR 217 (230)
T ss_dssp HHHH--TTCSEEECTTTTSSTTSCCSSSCCH-HHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred HHHh--cCCCEEEeecccccccccccchHHH-HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhcC
Confidence 2223 4555553 33344443333333332 35556666799999999999999999999999999999999986
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.55 E-value=7.7e-15 Score=130.90 Aligned_cols=194 Identities=17% Similarity=0.237 Sum_probs=146.4
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
+..+.|=|.+.|+ ....+.++.|.++|+|.||++ ++||-.+... ++. .+.++.+|+.+++|
T Consensus 10 ~~~IspSIl~~d~--~~l~~~i~~l~~~g~d~iHiD------ImDG~Fvpn~-------t~~----~~~v~~i~~~t~~~ 70 (230)
T d1rpxa_ 10 DIIVSPSILSANF--SKLGEQVKAIEQAGCDWIHVD------VMDGRFVPNI-------TIG----PLVVDSLRPITDLP 70 (230)
T ss_dssp SCEEEEBGGGSCG--GGHHHHHHHHHHTTCCCEEEE------EEBSSSSSCB-------CCC----HHHHHHHGGGCCSC
T ss_pred CeEEEcchhhcCH--HHHHHHHHHHHHcCCCEEEEe------CccCCcCCcc-------ccC----hHHHhhhhhccCce
Confidence 4456677777755 678899999999999999998 7787555321 122 35788888878887
Q ss_pred --EEEEecCcchhccCHHHHHHHHHHcCCcEEEecC--CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 142 --IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD--VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 142 --iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD--lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+.+|+- .++++++.+.++|+|-++++= ....+..++.+.++++|.+.-+.+.|.|+.+.++.+... -.
T Consensus 71 ~dvHLMv~-------~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~-vD 142 (230)
T d1rpxa_ 71 LDVHLMIV-------EPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDA-VD 142 (230)
T ss_dssp EEEEEESS-------SHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTT-CS
T ss_pred eeeeeeec-------chhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhh-CC
Confidence 677753 357899999999999998871 112246778899999999988899999998887666443 34
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhc-----CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKES-----STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-----~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+|.++++....|.+ .+.+...+.++++++. .+..|.|.+||+ .+++..+.++|||.+|+||++.+
T Consensus 143 ~VllM~V~PGf~GQ-~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~~Gad~~V~GS~if~ 212 (230)
T d1rpxa_ 143 LVLIMSVNPGFGGQ-SFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 212 (230)
T ss_dssp EEEEESSCTTCSSC-CCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred EEEEEEecCCcccc-hhhhhhHHHHHHHHHHHHhcCCceEEEEECCcC-HHHHHHHHHcCCCEEEEChHHHC
Confidence 55566655444443 4555666777776554 367899999998 49999999999999999999987
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2.2e-13 Score=116.79 Aligned_cols=201 Identities=14% Similarity=0.120 Sum_probs=132.8
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYN 149 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n 149 (311)
+..+++++.++.++.+. .++|++++|+|+. +..| .+.++++++. .+.++....-..
T Consensus 8 lD~~~~~~~~~~~~~~~-~~vdiikig~~~~----------------~~~G------~~~i~~l~~~~~~~~i~~d~k~~ 64 (213)
T d1q6oa_ 8 LDNQTMDSAYETTRLIA-EEVDIIEVGTILC----------------VGEG------VRAVRDLKALYPHKIVLADAKIA 64 (213)
T ss_dssp ECCSSHHHHHHHHHHHG-GGCSEEEECHHHH----------------HHHC------THHHHHHHHHCTTSEEEEEEEEC
T ss_pred ecCCCHHHHHHHHHhcC-CCccEEEeCeecc----------------ccCC------HHHHHHHHHhcccccceeEEeec
Confidence 36688999999999876 5899999997762 1223 3466666664 355655433221
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE-EecC-C
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSI-G 226 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~~-G 226 (311)
-....+.+.+.++|+|.++++... .+....+.+.++++|........+.++.++...+.......+.+ .+.. |
T Consensus 65 ----d~~~~~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 140 (213)
T d1q6oa_ 65 ----DAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQ 140 (213)
T ss_dssp ----SCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHH
T ss_pred ----cchHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccCCCCCHHHHHHHHHhHHHHHHHHHhcccC
Confidence 123456778899999999998664 34467788889999988766666666667776666644443332 3222 1
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHH
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 306 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l 306 (311)
..|. ...+...+.+++.++ .+.++.+++|++ ++++.++.+.|||++||||+|++. .+|.+.++++++.++++
T Consensus 141 ~~~~--~~~~~~l~~i~~~~~-~~~~i~~~gGi~-~~~~~~~~~~Gad~iVVGr~I~~a----~dp~~a~~~~~~~i~~~ 212 (213)
T d1q6oa_ 141 AAGV--AWGEADITAIKRLSD-MGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRDA----ASPVEAARQFKRSIAEL 212 (213)
T ss_dssp HTTC--CCCHHHHHHHHHHHH-TTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHHTS----SCHHHHHHHHHHHHHHH
T ss_pred cCCe--eCCHHHHHHHHHhhc-cCceEecCCCcC-cCCHHHHHHcCCCEEEEChhhcCC----CCHHHHHHHHHHHHHHh
Confidence 2222 122333344555544 468999999996 799999999999999999999983 34555555555544443
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.52 E-value=2.1e-14 Score=127.34 Aligned_cols=190 Identities=18% Similarity=0.245 Sum_probs=138.6
Q ss_pred EEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EE
Q 021527 66 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IA 143 (311)
Q Consensus 66 i~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--ii 143 (311)
.|=|.+.| .....+.++.+.++|+|.+|++ +.||..+... ++. .+.++.+++.+++| +.
T Consensus 6 spSil~~d--~~~l~~~i~~l~~~g~d~iHiD------ImDG~Fvpn~-------t~~----~~~~~~i~~~t~~~~dvH 66 (221)
T d1tqja_ 6 APSILSAD--FSRLGEEIKAVDEAGADWIHVD------VMDGRFVPNI-------TIG----PLIVDAIRPLTKKTLDVH 66 (221)
T ss_dssp EEBGGGSC--GGGHHHHHHHHHHTTCSEEEEE------EEBSSSSSCB-------CBC----HHHHHHHGGGCCSEEEEE
T ss_pred EechhccC--HHHHHHHHHHHHHcCCCEEEEE------CccCCccCcc-------ccC----cHhHHhhhhccCcceeee
Confidence 34344443 3678899999999999999998 7777655431 122 35778888777777 67
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCC--ChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV--PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl--p~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+|+- .++++++.+.++|++-++++=- ..++..+....++++|++.-+-+.|.|+.+.+..+.. .-.++.+
T Consensus 67 LMv~-------~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~-~~d~vlv 138 (221)
T d1tqja_ 67 LMIV-------EPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLP-VCDLILI 138 (221)
T ss_dssp EESS-------SGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG-GCSEEEE
T ss_pred EEEe-------CHHHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHh-hhcEEEE
Confidence 7752 3456889999999999988621 1223577888899999998888999999887766644 3456777
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhc-----CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKES-----STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~-----~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+++....|.+ ...+...+.++++++. .+..|.|.+||+. +++..+.++|||.+|+||++.+
T Consensus 139 M~V~pG~~GQ-~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~~Gad~~V~GS~if~ 204 (221)
T d1tqja_ 139 MSVNPGFGGQ-SFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN 204 (221)
T ss_dssp ESSCC----C-CCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred EEecCCCCCc-ccchhhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHhC
Confidence 7765444443 4455566677776653 3678999999985 8999999999999999999987
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.50 E-value=4.9e-14 Score=124.79 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=144.0
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc--
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP-- 141 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP-- 141 (311)
+.|=|.+.|. ....+.++.+.++|+|.||++ +.||-.+... ++. .+.++++|+. .++|
T Consensus 5 IspSil~~d~--~~l~~~i~~l~~~~~d~iHiD------imDG~Fvpn~-------t~g----~~~v~~i~~~~~~~~~d 65 (221)
T d1tqxa_ 5 IAPSVLASNI--SKLAEETQRMESLGAEWIHLD------VMDMHFVPNL-------SFG----PPVINNLKKYTKSIFFD 65 (221)
T ss_dssp EEEBGGGSCG--GGHHHHHHHHHHTTCSEEEEE------EEBSSSSSCB-------CCC----HHHHHHHGGGCSSCEEE
T ss_pred eehhhhccCH--HHHHHHHHHHHHcCCCEEEEE------CccCcCcCcc-------ccC----hHHHhhhhhcCCchhhh
Confidence 3344555544 577888999999999999998 7777443321 122 3477777765 4566
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecC--CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh-CCce
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD--VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA-SEGF 218 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD--lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~-a~gf 218 (311)
+.+|.- | ++++++.+.++|++-+++.- -...+..++.+.++++|...-+-+.|.|+.+.+..+... .-.+
T Consensus 66 vHLMv~-~------P~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~~g~~~Gial~p~t~~~~~~~~l~~~~~d~ 138 (221)
T d1tqxa_ 66 VHLMVE-Y------PEKYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINT 138 (221)
T ss_dssp EEEESS-C------GGGGGGGCTTSSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSE
T ss_pred hhHHhh-h------hhhhhhhhhhcCceeEEeehhccccchhhHHHHHHHhcCCeEEEeeccccccccchhhcccccccE
Confidence 567652 2 34577777888888777642 122345566788899999988999999998877665432 2345
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 297 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~ 297 (311)
+.++++....+.+ .+.+...+.++++|+.. ++.+.|.+||+ .+++..+.++|||.+|+||++.+. .++.+.++
T Consensus 139 vlim~V~pG~~GQ-~f~~~~l~KI~~lr~~~~~~~I~VDGGIn-~~~i~~l~~aGad~iV~GS~if~~----~d~~~~i~ 212 (221)
T d1tqxa_ 139 VLVMTVEPGFGGQ-SFMHDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISASHGANIIVAGTSIFNA----EDPKYVID 212 (221)
T ss_dssp EEEESSCTTCSSC-CCCGGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHHHHTCCEEEESHHHHTC----SSHHHHHH
T ss_pred EEEEeeccccccc-ccCcchhHHHHHHHHhcCCcceEEEcccC-HHhHHHHHHcCCCEEEEChHHHCC----CCHHHHHH
Confidence 5556654433333 45566778899999864 68899999997 699999999999999999999973 23444455
Q ss_pred HHHHHH
Q 021527 298 ELEKFA 303 (311)
Q Consensus 298 ~~~~~~ 303 (311)
++++-+
T Consensus 213 ~Lr~~i 218 (221)
T d1tqxa_ 213 TMRVSV 218 (221)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=99.46 E-value=4.5e-12 Score=110.37 Aligned_cols=189 Identities=20% Similarity=0.209 Sum_probs=124.2
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
||+.....+.++.+.++|+++|++ +++..+-.... +....++++.+..++|+++.
T Consensus 13 d~~~~~~~~~v~~~l~~Gv~~vql----R~k~~~~~e~~--------------~~a~~l~~i~~~~~~~liin------- 67 (206)
T d1xi3a_ 13 DRRLKPEVESVREALEGGATAIQM----RIKNAPTREMY--------------EIGKTLRQLTREYDALFFVD------- 67 (206)
T ss_dssp CTTTSCHHHHHHHHHHTTCSEEEE----CCCSCCHHHHH--------------HHHHHHHHHHHHTTCEEEEE-------
T ss_pred CCcccCHHHHHHHHHHcCCCEEEE----cCCCCCHHHHH--------------HHHHHHHHHHHHcCCeEEec-------
Confidence 466666789999999999999998 55544432211 11234445555688999983
Q ss_pred ccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE-EecCCccC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTG 229 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG 229 (311)
++++.+.+.|+|||+++ |++.+. .+..+-+.+...+..+.+ .+..... .|+.|+ ++..-.|.
T Consensus 68 -----d~~~lA~~~~adGvHl~~~~~~~~~-------~~~~~~~~iig~s~h~~~-e~~~a~~--~g~DYi~~gpvf~T~ 132 (206)
T d1xi3a_ 68 -----DRVDVALAVDADGVQLGPEDMPIEV-------AKEIAPNLIIGASVYSLE-EALEAEK--KGADYLGAGSVFPTK 132 (206)
T ss_dssp -----SCHHHHHHHTCSEEEECTTSCCHHH-------HHHHCTTSEEEEEESSHH-HHHHHHH--HTCSEEEEECSSCC-
T ss_pred -----hhHHHHHhccCceEeeccccccHhh-------hhhcccccccccccCCHH-HHHHHHh--cCCCEEEeccccccc
Confidence 45677888999999997 444321 122334556666666654 4433333 355565 23333455
Q ss_pred CCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHH
Q 021527 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 306 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l 306 (311)
++.+.++--.+.++++++.+++||++=+||+ ++++.++.+.|||||.|+|+|.+. .++....+++++.+++.
T Consensus 133 tk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI~-~~ni~~~~~~Ga~gvAvis~I~~~----~dp~~~~~~l~~~~~~~ 204 (206)
T d1xi3a_ 133 TKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAVISAVMGA----EDVRKATEELRKIVEEV 204 (206)
T ss_dssp ---CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEESHHHHTS----SSHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHhcCCCEEEECCCC-HHHHHHHHHhCCCEEEEhHHHHCC----CCHHHHHHHHHHHHHHh
Confidence 5555555456778888888899999999996 699999999999999999999973 23555566666555543
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.45 E-value=5.9e-13 Score=117.98 Aligned_cols=196 Identities=16% Similarity=0.230 Sum_probs=125.2
Q ss_pred EEEeCCCCCh-hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH---HHHhhccCCCcE
Q 021527 67 PYITAGDPDL-STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM---LKEVVPQMSCPI 142 (311)
Q Consensus 67 ~yi~~G~P~~-~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~---i~~ir~~~~iPi 142 (311)
.|+..+..+. ....+.++.+.++|+++|++ +++-+|. .+.++.++. ++++.++.++|+
T Consensus 19 ly~i~~~~~~~~~~~~~v~~al~~Gv~~iql----R~K~~~~--------------~~~~~~~~~a~~l~~lc~~~~~~l 80 (226)
T d2tpsa_ 19 VYFIMGSNNTKADPVTVVQKALKGGATLYQF----REKGGDA--------------LTGEARIKFAEKAQAACREAGVPF 80 (226)
T ss_dssp EEEEECGGGCSSCHHHHHHHHHHHTCSEEEE----CCCSTTC--------------CCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred EEEEECccccccCHHHHHHHHHHCCCCEEEE----cCCCccc--------------hhHHHHHHHHHHHHHHHHHhCCeE
Confidence 4555555444 46789999999999999999 4443332 122233333 444445678999
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
++. +.++.+.+.|+|||+++ |+++.+.. .. .+ +.+...+..+.++. +...+ .|+.|
T Consensus 81 iIn------------d~~~lA~~~~adGvHl~~~d~~~~~~r---~~---~~-~~iig~S~h~~~e~-~~a~~--~g~DY 138 (226)
T d2tpsa_ 81 IVN------------DDVELALNLKADGIHIGQEDANAKEVR---AA---IG-DMILGVSAHTMSEV-KQAEE--DGADY 138 (226)
T ss_dssp EEE------------SCHHHHHHHTCSEEEECTTSSCHHHHH---HH---HT-TSEEEEEECSHHHH-HHHHH--HTCSE
T ss_pred EEc------------CCHHHHhhccCCEEEeccccchhhhhh---hc---cc-ceeeeeeccchHHH-HHHHh--CcCCe
Confidence 984 34567788899999997 66655443 22 23 23455555565443 33333 35556
Q ss_pred EE--ecCCccCCCCCC-CchHHHHHHHHhh-cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHH
Q 021527 221 LV--SSIGVTGARASI-SGHVQTLLREIKE-SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 296 (311)
Q Consensus 221 ~v--s~~G~TG~~~~~-~~~~~~~l~~vk~-~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~ 296 (311)
+. +.+ .|.++.+. +....+.++.+++ .+++||++-+||+ ++++.++.+.|||||.|.|+|.+. .++.+..
T Consensus 139 i~~gpvf-~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI~-~~ni~~l~~~Ga~giAvis~I~~a----~dp~~~~ 212 (226)
T d2tpsa_ 139 VGLGPIY-PTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVSMISAISQA----EDPESAA 212 (226)
T ss_dssp EEECCSS-CCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEESHHHHTS----SCHHHHH
T ss_pred EEEeccc-ccccccccccccccchhHHHHHhcCCCCEEEecCCC-HHHHHHHHHhCCCEEEEhHHhhcC----CCHHHHH
Confidence 53 333 35454443 3344567777765 5789999999995 799999999999999999999972 2455555
Q ss_pred HHHHHHHHHHHh
Q 021527 297 KELEKFAKSLKS 308 (311)
Q Consensus 297 ~~~~~~~~~l~~ 308 (311)
+++.+.++..|.
T Consensus 213 ~~~~~~~~~~k~ 224 (226)
T d2tpsa_ 213 RKFREEIQTYKT 224 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555555555443
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.36 E-value=1.1e-11 Score=111.06 Aligned_cols=194 Identities=18% Similarity=0.217 Sum_probs=137.6
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
..|+| .+.++.+.+.|+|.+++-- -|...+| ....++.++++.+..++|+.+-+-..
T Consensus 28 ~~gdP-----~~~a~~~~~~g~dei~ivD--ld~~~~~----------------~~~~~~~i~~i~~~~~~pi~vgGGIr 84 (253)
T d1thfd_ 28 DSGDP-----VELGKFYSEIGIDELVFLD--ITASVEK----------------RKTMLELVEKVAEQIDIPFTVGGGIH 84 (253)
T ss_dssp CTTCH-----HHHHHHHHHTTCCEEEEEE--SSCSSSH----------------HHHHHHHHHHHHTTCCSCEEEESSCC
T ss_pred ECCCH-----HHHHHHHHHcCCCEEEEEe--ecccccC----------------cccHHHHHHHHHhccCccceeecccc
Confidence 35777 8999999999999999931 1111122 12346789999999999998865321
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC--------------------CCChHHHHH
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT--------------------PTTPTDRMK 209 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis--------------------p~t~~eri~ 209 (311)
. .+-++.+.+.|++-+++.-..+++...+.+.++++|-..+.... +....+.++
T Consensus 85 ~------~e~i~~~l~~Ga~kviigs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
T d1thfd_ 85 D------FETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVV 158 (253)
T ss_dssp S------HHHHHHHHHTTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHH
T ss_pred c------chhhhhHHhcCCCEEEEChHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHH
Confidence 1 34577789999999999877777777778888888865443211 112245666
Q ss_pred HHHHhCCc-eEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 210 AIVEASEG-FVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 210 ~i~~~a~g-fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
++.+..-+ +++. ++..| +..+.+ .++++++++.+++|+++++|+++.+|+.++...|++||+|||+|...
T Consensus 159 ~~~~~g~~eii~tdI~~dG---t~~G~d---~~ll~~i~~~~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~~-- 230 (253)
T d1thfd_ 159 EVEKRGAGEILLTSIDRDG---TKSGYD---TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR-- 230 (253)
T ss_dssp HHHHTTCSEEEEEETTTTT---SCSCCC---HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT--
T ss_pred HHHhccCCEEEEEEecccC---ccCCcc---ccccccccccccceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHcC--
Confidence 66665444 5555 45544 333444 36788898889999999999999999999999999999999999752
Q ss_pred hcCCchhHHHHHHHHHHH
Q 021527 288 EAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~ 305 (311)
+-.++++++++++
T Consensus 231 -----~~~~~~~k~~l~~ 243 (253)
T d1thfd_ 231 -----EIDVRELKEYLKK 243 (253)
T ss_dssp -----CSCHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHH
Confidence 1235667777654
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.30 E-value=4.3e-11 Score=107.35 Aligned_cols=193 Identities=18% Similarity=0.203 Sum_probs=136.3
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP 150 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~ 150 (311)
.|+| .+.++.+.+.|+|.+++- | .|+.. ..-...++.++++.+..++|+.+-+-...
T Consensus 31 ~~dP-----~~~a~~~~~~gadei~iv----D--l~~~~------------~~~~~~~~~i~~i~~~~~~pi~~gGGIr~ 87 (252)
T d1h5ya_ 31 VGDP-----VEMAVRYEEEGADEIAIL----D--ITAAP------------EGRATFIDSVKRVAEAVSIPVLVGGGVRS 87 (252)
T ss_dssp EECH-----HHHHHHHHHTTCSCEEEE----E--CCCCT------------TTHHHHHHHHHHHHHHCSSCEEEESSCCS
T ss_pred CCCH-----HHHHHHHHHCCCCEEEEE----e--ccccc------------cccccHHHHHHHHHhhcCCcceeecccch
Confidence 3677 899999999999999984 1 22200 01123357888888889999998753221
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-eC-------------------CCChHHHHHH
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-TT-------------------PTTPTDRMKA 210 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-is-------------------p~t~~eri~~ 210 (311)
.+-++.+.++|++-+++.-..++....+.+.++.+|-..+.+ +. .-.+.+.+++
T Consensus 88 ------~e~~~~ll~~G~~kVii~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (252)
T d1h5ya_ 88 ------LEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKE 161 (252)
T ss_dssp ------HHHHHHHHHHTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHH
T ss_pred ------hhhhhhHhhcCCcEEEecccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHH
Confidence 345777889999999998766666666777888888653322 11 1134566777
Q ss_pred HHHhCC-ceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 211 IVEASE-GFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 211 i~~~a~-gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
+.+..- .+++. ++..| +..+.+. ++++++++.+++|+++++||++.++++++.+.|++||++||+|..--
T Consensus 162 ~~~~g~~eii~tdI~~dG---~~~G~d~---~~~~~i~~~~~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~~~-- 233 (252)
T d1h5ya_ 162 VEELGAGEILLTSIDRDG---TGLGYDV---ELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRV-- 233 (252)
T ss_dssp HHHHTCSEEEEEETTTTT---TCSCCCH---HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS--
T ss_pred HHhcCCCEEEEEeecccC---ccCCcCH---HHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHcCC--
Confidence 777644 45554 45544 3334443 67888888889999999999999999999999999999999997622
Q ss_pred cCCchhHHHHHHHHHHH
Q 021527 289 AQSPEEGLKELEKFAKS 305 (311)
Q Consensus 289 ~~~~~~~~~~~~~~~~~ 305 (311)
-.++++++|+++
T Consensus 234 -----~~~~~lk~~l~~ 245 (252)
T d1h5ya_ 234 -----LSIAQVKRYLKE 245 (252)
T ss_dssp -----SCHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHH
Confidence 235677777653
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=1.8e-10 Score=102.91 Aligned_cols=194 Identities=18% Similarity=0.186 Sum_probs=137.0
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
..|+| .+.++.+.+.|+|.+++- ..|+-. ..-..-+++++++.+...+|+.+-+-.+
T Consensus 28 ~~gdP-----~~~a~~~~~~g~dei~ii------Dl~~~~------------~~~~~~~~~i~~i~~~~~~pi~vgGGIr 84 (251)
T d1ka9f_ 28 DAGDP-----VEAARAYDEAGADELVFL------DISATH------------EERAILLDVVARVAERVFIPLTVGGGVR 84 (251)
T ss_dssp STTCH-----HHHHHHHHHHTCSCEEEE------ECCSST------------TCHHHHHHHHHHHHTTCCSCEEEESSCC
T ss_pred ECCCH-----HHHHHHHHHcCCCEEEEE------eccccc------------ccchhHHHHHHHHHhccCcchheecccc
Confidence 35778 899999999999999994 112200 0112346789999999999998876332
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe--------------------CCCChHHHHH
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT--------------------TPTTPTDRMK 209 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li--------------------sp~t~~eri~ 209 (311)
. .+-++.+.+.|++-|++....++....+.+.++.+|-..+... +...+.+.++
T Consensus 85 s------~e~~~~ll~~Ga~kVii~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T d1ka9f_ 85 S------LEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAV 158 (251)
T ss_dssp S------HHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHH
T ss_pred C------HHHHHHHHHcCCCEEEECchhhhCHHHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHH
Confidence 1 3456778899999999987766666677788888887554321 0113346677
Q ss_pred HHHHhCCc-eEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 210 AIVEASEG-FVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 210 ~i~~~a~g-fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
++.+..-+ +++. ++..| +..+.+ .++++++++.+++|+++++|+++.+|+.++.+.|++||++||+|...-
T Consensus 159 ~~~~~g~~eii~tdi~~dG---~~~G~d---~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~g~- 231 (251)
T d1ka9f_ 159 KGVELGAGEILLTSMDRDG---TKEGYD---LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE- 231 (251)
T ss_dssp HHHHHTCCEEEEEETTTTT---TCSCCC---HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS-
T ss_pred HHHhcCCCEEEEEeecccC---ccCCcc---hhHHHHHHhhcceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHcCC-
Confidence 77666444 4444 44444 333444 367888888889999999999999999999999999999999998521
Q ss_pred hcCCchhHHHHHHHHHHH
Q 021527 288 EAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~ 305 (311)
-.++++++++++
T Consensus 232 ------~~~~~~k~~l~~ 243 (251)
T d1ka9f_ 232 ------IPIPKLKRYLAE 243 (251)
T ss_dssp ------SCHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHH
Confidence 234566666653
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.14 E-value=4.5e-10 Score=99.45 Aligned_cols=179 Identities=20% Similarity=0.302 Sum_probs=121.5
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
..|+| .+.++.+.+.|+|.|++- ..|+ +...+.+. +.++++.++..+|+.+-+=.+
T Consensus 29 ~~~dP-----~~~a~~~~~~ga~~l~i~------DLd~---------~~~~~~~~----~~i~~i~~~~~~pi~vGGGIr 84 (239)
T d1vzwa1 29 SYGSP-----LEAALAWQRSGAEWLHLV------DLDA---------AFGTGDNR----ALIAEVAQAMDIKVELSGGIR 84 (239)
T ss_dssp BCCCH-----HHHHHHHHHTTCSEEEEE------EHHH---------HHTSCCCH----HHHHHHHHHCSSEEEEESSCC
T ss_pred ecCCH-----HHHHHHHHHcCCCEEEEE------eecc---------cccccchH----HHHHHHHhhcCcceEeecccc
Confidence 44788 899999999999999994 1121 23344443 577888888899999976322
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe--------------CCCChHHHHHHHHHhC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT--------------TPTTPTDRMKAIVEAS 215 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li--------------sp~t~~eri~~i~~~a 215 (311)
. .+-++.+.+.|++-+++.-..++....+.+.++.+|-..+.-+ ......+-+++..+..
T Consensus 85 s------~~~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~g 158 (239)
T d1vzwa1 85 D------DDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEG 158 (239)
T ss_dssp S------HHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTT
T ss_pred c------chhhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeeccceeeecCccceeeccccchhhhhhhhcc
Confidence 1 3456778899999999986666666666677777775544321 1112234444444433
Q ss_pred -CceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc---CCcEEEEhhHhhc
Q 021527 216 -EGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW---GADGVIVGSAMVK 284 (311)
Q Consensus 216 -~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~---GADGvIVGSaiv~ 284 (311)
..+++. ++..| +.++.+ .++++++++.+++|+++++||++.+|++++... |+|||+|||+|..
T Consensus 159 ~~eii~tdi~~dG---t~~G~d---~~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~ 226 (239)
T d1vzwa1 159 CARYVVTDIAKDG---TLQGPN---LELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYA 226 (239)
T ss_dssp CCCEEEEEC----------CCC---HHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred ccEEEEEeecccc---eecCCc---chhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHC
Confidence 335555 55554 333333 257888888899999999999999999998765 9999999999976
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.13 E-value=3.6e-09 Score=94.36 Aligned_cols=198 Identities=15% Similarity=0.226 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHcCCccEEEEE-----eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcC
Q 021527 48 VGLAETFTRLKKQGKVALIPYI-----TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLA-DGPVIQAAATRSLARG 121 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi-----~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G 121 (311)
..+.+.+.+..++++..+|+=+ +.|..+. .-.++++ ..++||++|-+= .||.. -|
T Consensus 30 ~~l~~~i~~~~~~~~~~iIaEiKr~SPS~g~i~~-d~~~~a~-~~~~gA~aiSVL---Td~~~F~G-------------- 90 (247)
T d1a53a_ 30 ISLNERILEFNKRNITAIIAEYKRKSPSGLDVER-DPIEYSK-FMERYAVGLSIL---TEEKYFNG-------------- 90 (247)
T ss_dssp CCHHHHHHHHHHTTCCCEEEEECSBCTTSCBCCC-CHHHHHH-HHTTTCSEEEEE---CCCTTTCC--------------
T ss_pred cCHHHHHHHHHhcCCCeEEeeEecCCCCCCcccc-CHHHHHH-HHHhCCCeEEEe---cCcccccc--------------
Confidence 3567777777788899999877 2233332 2345554 667999999985 55532 34
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEe
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFT 199 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~li 199 (311)
+ ++.++++++.+++||+--= +..- +--+..++..|||++++. -|+.++..++.+.++..|++.+.=+
T Consensus 91 -s----~~dl~~v~~~~~~PiLrKD----FIid--~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEv 159 (247)
T d1a53a_ 91 -S----YETLRKIASSVSIPILMKD----FIVK--ESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEI 159 (247)
T ss_dssp -C----HHHHHHHHHHCCSCEEEES----CCCS--HHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEE
T ss_pred -c----hHHHHHHHhccccceeecc----cccC--hHHHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhc
Confidence 2 3577788888999987632 2111 224667889999998874 4556788999999999999987665
Q ss_pred CCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 200 TPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 200 sp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
. +. +.++........+ .-+...... .+..+... ..++.... +..++...||+++++++.+.++|+|||.
T Consensus 160 h--~~-~El~~a~~~~a~i-IGINnRnL~----t~~vd~~~-~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davL 230 (247)
T d1a53a_ 160 N--DE-NDLDIALRIGARF-IGINSRDLE----TLEINKEN-QRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFL 230 (247)
T ss_dssp C--SH-HHHHHHHHTTCSE-EEEESBCTT----TCCBCHHH-HHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEE
T ss_pred C--CH-HHHHHHHhCCCCe-EeeeccChh----hhhhhhhH-HHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 4 33 3344443433333 222211111 12222222 33333332 6788899999999999999999999999
Q ss_pred EhhHhhc
Q 021527 278 VGSAMVK 284 (311)
Q Consensus 278 VGSaiv~ 284 (311)
||+++++
T Consensus 231 IGeaLmk 237 (247)
T d1a53a_ 231 IGSSLMR 237 (247)
T ss_dssp ECHHHHH
T ss_pred ECHHHcC
Confidence 9999998
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=1.1e-09 Score=95.08 Aligned_cols=189 Identities=19% Similarity=0.196 Sum_probs=132.4
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCc
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCP 141 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iP 141 (311)
.+++-+...+ .++..+.+++|.++|++.+|+- ++.| +.++.++++++. .++-
T Consensus 10 ~iipvlr~~~--~~~a~~~~~al~~~Gi~~iEit--lr~p----------------------~a~~~i~~l~~~~~~~~~ 63 (202)
T d1wa3a1 10 KIVAVLRANS--VEEAKEKALAVFEGGVHLIEIT--FTVP----------------------DADTVIKELSFLKEKGAI 63 (202)
T ss_dssp CEEEEECCSS--HHHHHHHHHHHHHTTCCEEEEE--TTST----------------------THHHHHHHTHHHHHTTCE
T ss_pred CEEEEEECCC--HHHHHHHHHHHHHcCCCEEEEe--cCCc----------------------cHHHHHHHHHHhcCCCcE
Confidence 4778776554 5899999999999999999994 4544 224566666532 3444
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+..-+-.| .+-++.+.++|++=++-|.+.. ++.+.++++|+..++.+. |+.|-+..+ ..|+.++
T Consensus 64 vGaGTV~~-------~~~~~~a~~aGa~fivsP~~~~----~v~~~~~~~~i~~iPGv~--TpsEi~~A~---~~G~~~l 127 (202)
T d1wa3a1 64 IGAGTVTS-------VEQCRKAVESGAEFIVSPHLDE----EISQFCKEKGVFYMPGVM--TPTELVKAM---KLGHTIL 127 (202)
T ss_dssp EEEESCCS-------HHHHHHHHHHTCSEEECSSCCH----HHHHHHHHHTCEEECEEC--SHHHHHHHH---HTTCCEE
T ss_pred EEeccccc-------HHHHHHHHhhcccEEeCCCCcH----HHHHHHHhcCCceeCCcC--cHHHHHHHH---HCCCCEE
Confidence 55544433 4568889999999998888763 467788899998888764 555655433 3455444
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELE 300 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~ 300 (311)
-- .. +. ..-..+++.++... ++|++.-+||+ .+++.+.+++|+.+|.+||++++. ++++--+..+
T Consensus 128 K~-fP--a~-----~~G~~~lk~l~~p~p~i~~iptGGI~-~~n~~~~l~aga~avg~Gs~l~~~-----~~~~i~~~a~ 193 (202)
T d1wa3a1 128 KL-FP--GE-----VVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVKG-----TPDEVREKAK 193 (202)
T ss_dssp EE-TT--HH-----HHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHCS-----CHHHHHHHHH
T ss_pred Ee-cc--hh-----hcCHHHHHHHhCcccCCcEEeeCCCC-HHHHHHHHHCCCeEEEEchhhcCC-----CHHHHHHHHH
Confidence 20 10 00 00125788888865 79999999995 799999999999999999999973 3444455667
Q ss_pred HHHHHHHh
Q 021527 301 KFAKSLKS 308 (311)
Q Consensus 301 ~~~~~l~~ 308 (311)
++++.+|.
T Consensus 194 ~~~~~~rg 201 (202)
T d1wa3a1 194 AFVEKIRG 201 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 77777664
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=99.10 E-value=9.2e-10 Score=96.87 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=96.8
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecC-CccCCCCC
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSI-GVTGARAS 233 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~-G~TG~~~~ 233 (311)
-.+.+++.|++++++.+ ..+++..+..+.++++|+.+|+.+.++ ++ ..+..+.....+-+.... ..||....
T Consensus 77 s~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~gl~~ivcvge~--~~-~~~~~~~~~~iIayep~waIGtg~~~~ 153 (226)
T d1w0ma_ 77 SLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAPDP--RT-SLAAAALGPHAVAVEPPELIGTGRAVS 153 (226)
T ss_dssp BHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEESSH--HH-HHHHHHTCCSEEEECCGGGTTTSCCHH
T ss_pred eHhhhcccccceEEeechhhhhhccchHHHHHHHHHcCCEEEEecCch--HH-hhhhhccccceeeecchhhccCCCCCC
Confidence 35678899999999986 556788888899999999988877543 22 223445555555443321 23443211
Q ss_pred --CCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 234 --ISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 234 --~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
....+.+.++.+++. .++||++|+||++.+++..+.+.|+|||.||||+++.- +....+.++++.+.+
T Consensus 154 ~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~-------d~~~~i~~l~~~~~~ 224 (226)
T d1w0ma_ 154 RYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAK-------DPYAKIVELAKPLSE 224 (226)
T ss_dssp HHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCS-------SHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheecCC-------CHHHHHHHHHHHHHh
Confidence 112344455556554 47999999999999999999999999999999999732 234566777776654
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.10 E-value=1.4e-09 Score=99.55 Aligned_cols=199 Identities=19% Similarity=0.170 Sum_probs=118.4
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM 130 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~ 130 (311)
.+.+..+++.-....+.-...+-.+.+++.+.++.+++.|+|+||+.+ |-|-..+-- . . ....+.+.+.+.++
T Consensus 90 ~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~--scPn~~~~~--~-~--~~~~~~~~~~~~~i 162 (312)
T d1gtea2 90 CQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNL--SCPHGMGER--G-M--GLACGQDPELVRNI 162 (312)
T ss_dssp HHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC--CCBCCCC----------SBGGGCHHHHHHH
T ss_pred hhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeecc--CCCCccccc--c-c--chhhhhhHHHHHHH
Confidence 344444443322223333333445678899999999999999999974 333332200 0 0 00112345556678
Q ss_pred HHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHH
Q 021527 131 LKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 131 i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~ 210 (311)
++.+|+.+++|+++-.--+ . ....++++.+.++|+||+++.+-.. +...+ .....+...+..
T Consensus 163 ~~~v~~~~~~pv~vKl~~~--~-~~~~~i~~~~~~~g~~gi~~~n~~~-------------~~~~~--~~~~~~~~~~~~ 224 (312)
T d1gtea2 163 CRWVRQAVQIPFFAKLTPN--V-TDIVSIARAAKEGGADGVTATNTVS-------------GLMGL--KADGTPWPAVGA 224 (312)
T ss_dssp HHHHHHHCSSCEEEEECSC--S-SCHHHHHHHHHHHTCSEEEECCCEE-------------ECCCB--CTTSCBSSCBTT
T ss_pred HHHHhhccCCceeeccccc--c-hhHHHHHHHHHHhcccceEEEeecc-------------ccccc--cccccccccccc
Confidence 8888888999998853111 1 1346778889999999998864311 00000 000000000000
Q ss_pred HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 211 i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
....++ -|.+|. .+.+-..++++++++.+ ++||+..+||++.+|+.+.+.+|||+|-|||+++.
T Consensus 225 --~~~~~~------gg~sG~--~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~ 289 (312)
T d1gtea2 225 --GKRTTY------GGVSGT--AIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN 289 (312)
T ss_dssp --TTBBCC------EEEESG--GGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred --cccccc------ccccCc--CcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhc
Confidence 000111 123332 23334457899998876 69999999999999999999999999999999986
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=99.08 E-value=1.1e-09 Score=101.60 Aligned_cols=204 Identities=13% Similarity=0.144 Sum_probs=133.5
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHHHHHHhhccCCCcEEEEe
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT-NFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~-~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
|-..||| ++.++.+.+.|||.|++- ..|+ -..|. +-...++.++++.+++.+|+.+-|
T Consensus 44 ~r~iGdP-----~~~a~~~~~~gaDeL~iv------Dida----------s~~~~~~~~~~~~~I~~i~~~~~vPi~vGG 102 (323)
T d1jvna1 44 VRNLGKP-----VQLAQKYYQQGADEVTFL------NITS----------FRDCPLKDTPMLEVLKQAAKTVFVPLTVGG 102 (323)
T ss_dssp ---CHHH-----HHHHHHHHHTTCSEEEEE------EEC-------------CCCGGGCHHHHHHHHHTTTCCSCEEEES
T ss_pred ccccCCH-----HHHHHHHHHCCCCEEEEE------ECcC----------CCCCcCCCchHHHHHHhhccccceeEEEec
Confidence 3356788 999999999999999983 1122 01111 112457899999999999999986
Q ss_pred cCcchhcc-----CHHHHHHHHHHcCCcEEEecCCChhhH-------------HHHHHHHHHcCCCeEEE-eC-------
Q 021527 147 YYNPILKR-----GVDNFMSTVRDIGIRGLVVPDVPLEET-------------ESLQKEAMKNKIELVLF-TT------- 200 (311)
Q Consensus 147 Y~n~i~~~-----g~~~fi~~~~~aGadGviipDlp~ee~-------------~~~~~~~~~~gi~~I~l-is------- 200 (311)
-...+..- -..+-++.+.++|||-|++....++.. ..+.+.++.+|-..|.. +.
T Consensus 103 GIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~ 182 (323)
T d1jvna1 103 GIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVN 182 (323)
T ss_dssp SCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEES
T ss_pred CcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCCceEEEEEEEEecccc
Confidence 44322110 012346778899999999975433221 23566677788543332 11
Q ss_pred ------------------------------------CCChHHHHHHHHHhCCceEEE--EecCCccCCCCCCCchHHHHH
Q 021527 201 ------------------------------------PTTPTDRMKAIVEASEGFVYL--VSSIGVTGARASISGHVQTLL 242 (311)
Q Consensus 201 ------------------------------------p~t~~eri~~i~~~a~gfiY~--vs~~G~TG~~~~~~~~~~~~l 242 (311)
.-...+.++.+.+..-|-+.+ ++..| ...+.+ .+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdIdrDG---t~~G~D---~el~ 256 (323)
T d1jvna1 183 SQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDG---SNSGYD---LELI 256 (323)
T ss_dssp SGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTT---TCSCCC---HHHH
T ss_pred ccccccccccccccccCCCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEEeecccc---cccccc---hhHH
Confidence 002356777777776666666 34444 344444 3688
Q ss_pred HHHhhcCCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHH
Q 021527 243 REIKESSTKPVAVGFGISKPEHVQQVA-GWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 243 ~~vk~~~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
+++++.+++|+++.+|+++.+|+.+++ ..|+|||++||+|...- ..+.+++++++.
T Consensus 257 ~~i~~~~~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~~-------~si~elK~~L~~ 313 (323)
T d1jvna1 257 EHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGE-------FTVNDVKEYLLE 313 (323)
T ss_dssp HHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTS-------CCHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcCC-------CCHHHHHHHHHH
Confidence 899888999999999999999998865 45799999999997522 235566766653
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=99.03 E-value=2.1e-09 Score=94.28 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=97.1
Q ss_pred hhccCCCcEEEE-ecCcchhccCHHHHHHHHHHcCCcEEEec----CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHH
Q 021527 134 VVPQMSCPIALF-TYYNPILKRGVDNFMSTVRDIGIRGLVVP----DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRM 208 (311)
Q Consensus 134 ir~~~~iPiilm-~Y~n~i~~~g~~~fi~~~~~aGadGviip----Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri 208 (311)
+.+..++++..- .++...-.+--+--.+.+++.|++.+++. -..+.|..+....+.+.|+..++-+..+ .+.
T Consensus 53 ~~~~~~i~vgaQn~~~~~~Ga~TGeis~~~l~~~g~~~~iiGHSErr~~~~e~~~~i~~~~~~gl~~i~cv~~~-~~~-- 129 (224)
T d1hg3a_ 53 IAESVEIPVFAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSNNP-AVS-- 129 (224)
T ss_dssp HHHSCSSCBEESCCCSCCSBSCTTCCCHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEESSH-HHH--
T ss_pred hccccceeeeecccccccccchhheechhhccccCcceeeeccccccccccchhHHHHHHHHcCCceeechhhH-HHH--
Confidence 344566776543 22222211111234567889999999995 3455677778888899999887766533 222
Q ss_pred HHHHHhCCceEEEEe--cCCccCCCC--CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 209 KAIVEASEGFVYLVS--SIGVTGARA--SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 209 ~~i~~~a~gfiY~vs--~~G~TG~~~--~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+.+......++-+.. .. .||... ..+..+.+.++.+++.. ++||++|+||++++++..+.+.|+|||.||||++
T Consensus 130 ~~~~~~~~~iiAyEpvwaI-Gtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl 208 (224)
T d1hg3a_ 130 AAVAALNPDYVAVEPPELI-GTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVT 208 (224)
T ss_dssp HHHHTTCCSEEEECCTTTT-TTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HhhhhcccceEEecchHhh-ccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceee
Confidence 233344445554432 22 244322 23345667777777653 7899999999999999999999999999999999
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 209 ~ 209 (224)
T d1hg3a_ 209 K 209 (224)
T ss_dssp T
T ss_pred c
Confidence 8
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=99.00 E-value=2e-08 Score=87.58 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=132.6
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPi 142 (311)
.+++-+..-+ .++..+.+++|.++|+..||+- ++.| +.++.+++++++ .++-+
T Consensus 15 ~iipvlr~~~--~~~~~~~~~al~~~Gi~~iEit--l~~~----------------------~a~~~I~~l~~~~p~~~v 68 (212)
T d1vhca_ 15 KIVPVIALDN--ADDILPLADTLAKNGLSVAEIT--FRSE----------------------AAADAIRLLRANRPDFLI 68 (212)
T ss_dssp CEEEEECCSS--GGGHHHHHHHHHHTTCCEEEEE--TTST----------------------THHHHHHHHHHHCTTCEE
T ss_pred CEEEEEeCCC--HHHHHHHHHHHHHCCCCEEEEe--CCCh----------------------hHHHHHHHHHhcCCCceE
Confidence 3777776554 4789999999999999999995 3443 224677777754 46666
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
..-+-.| .+-++.+.++|++=++-|.+.. ++.+.|+++++..++.+. |+.|-+..+ +..-.++=+-
T Consensus 69 GaGTV~~-------~~~~~~a~~aGa~FivSP~~~~----~v~~~a~~~~i~~iPGv~--TpsEi~~A~-~~G~~~vK~F 134 (212)
T d1vhca_ 69 AAGTVLT-------AEQVVLAKSSGADFVVTPGLNP----KIVKLCQDLNFPITPGVN--NPMAIEIAL-EMGISAVKFF 134 (212)
T ss_dssp EEESCCS-------HHHHHHHHHHTCSEEECSSCCH----HHHHHHHHTTCCEECEEC--SHHHHHHHH-HTTCCEEEET
T ss_pred eeeeccc-------HHHHHHHHhhCCcEEECCCCCH----HHHHHHHhcCCCccCCcC--CHHHHHHHH-HCCCCEEEEc
Confidence 6655444 4578889999999998897753 477888999999998774 555654333 3232333221
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch-hhhcCCchhHHHHHH
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL-LGEAQSPEEGLKELE 300 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~-~~~~~~~~~~~~~~~ 300 (311)
... ..| -..+++.++.-. ++|++.-+||+ .+|+.+.++.|+.+++.||.++.. +-+.+++++--+.++
T Consensus 135 PA~-~~g--------G~~~lkal~~p~p~~~~~ptGGV~-~~N~~~yl~~g~v~~~~Gs~l~~~~~i~~~d~~~i~~~a~ 204 (212)
T d1vhca_ 135 PAE-ASG--------GVKMIKALLGPYAQLQIMPTGGIG-LHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVR 204 (212)
T ss_dssp TTT-TTT--------HHHHHHHHHTTTTTCEEEEBSSCC-TTTHHHHHTSTTBCCEEECGGGCHHHHHTTCHHHHHHHHH
T ss_pred ccc-ccc--------hHHHHHHHhccccCCeEEecCCCC-HHHHHHHHhCCCEEEEEChhhCCHHHHhcCCHHHHHHHHH
Confidence 110 111 136789988865 79999999997 699999999999999999999853 222334444444445
Q ss_pred HHHHHHH
Q 021527 301 KFAKSLK 307 (311)
Q Consensus 301 ~~~~~l~ 307 (311)
++++.+|
T Consensus 205 ~~~~~ik 211 (212)
T d1vhca_ 205 EVIDIIK 211 (212)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 5554443
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=6.8e-09 Score=90.72 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=132.6
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP 141 (311)
..+++-+... +.++..+.+++|.++|+..||+- ++.| +.++.+++++++ .++-
T Consensus 15 ~~iipvlr~~--~~~~a~~~~~al~~~Gi~~iEit--l~tp----------------------~a~~~I~~l~~~~p~~~ 68 (213)
T d1wbha1 15 GPVVPVIVVK--KLEHAVPMAKALVAGGVRVLNVT--LRTE----------------------CAVDAIRAIAKEVPEAI 68 (213)
T ss_dssp CSEEEEECCS--SGGGHHHHHHHHHHTTCCEEEEE--SCST----------------------THHHHHHHHHHHCTTSE
T ss_pred CCEEEEEECC--CHHHHHHHHHHHHHCCCCEEEEe--CCCh----------------------hHHHHHHHHHHHCCCCe
Confidence 4588888654 45889999999999999999995 3433 225677777765 4565
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
++.-+-.| .+-++.+.++|++=++-|.+.. ++.+.|+++|+..++.+. |+.|-+..+ + .|+-++
T Consensus 69 vGaGTV~~-------~~~~~~a~~aGa~FivSP~~~~----~v~~~a~~~~i~~iPGv~--TpsEi~~A~-~--~G~~~v 132 (213)
T d1wbha1 69 VGAGTVLN-------PQQLAEVTEAGAQFAISPGLTE----PLLKAATEGTIPLIPGIS--TVSELMLGM-D--YGLKEF 132 (213)
T ss_dssp EEEESCCS-------HHHHHHHHHHTCSCEEESSCCH----HHHHHHHHSSSCEEEEES--SHHHHHHHH-H--TTCCEE
T ss_pred eecccccc-------HHHHHHHHHCCCcEEECCCCCH----HHHHHHHhcCCCccCCcC--CHHHHHHHH-H--CCCCEE
Confidence 66655433 4567889999999999998753 367888999999999874 555654433 3 444333
Q ss_pred --EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch-hhhcCCchhHHH
Q 021527 222 --VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL-LGEAQSPEEGLK 297 (311)
Q Consensus 222 --vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~-~~~~~~~~~~~~ 297 (311)
-.. ...| -..+++.++.-. +++++.-+||+ ++++.+.++.|+.+++.||.+++. +-+.+++ +
T Consensus 133 KlFPA-~~~G--------g~~~lkal~~p~p~~~~~ptGGV~-~~n~~~yl~~g~v~~~~Gs~l~~~~~i~~~d~----~ 198 (213)
T d1wbha1 133 KFFPA-EANG--------GVKALQAIAGPFSQVRFCPTGGIS-PANYRDYLALKSVLCIGGSWLVPADALEAGDY----D 198 (213)
T ss_dssp EETTT-TTTT--------HHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHTSTTBSCEEEGGGSCHHHHHHTCH----H
T ss_pred Eeccc-hhcC--------hHHHHHHhcCcccCCceeeeCCCC-HHHHHHHHhCCCEEEEEChhhCChhhhhcCCH----H
Confidence 111 0111 136889998865 78999999997 699999999999999999999863 2122333 4
Q ss_pred HHHHHHHHHHh
Q 021527 298 ELEKFAKSLKS 308 (311)
Q Consensus 298 ~~~~~~~~l~~ 308 (311)
++++.++++.+
T Consensus 199 ~i~~~a~~~v~ 209 (213)
T d1wbha1 199 RITKLAREAVE 209 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555554443
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=98.97 E-value=2.1e-09 Score=95.21 Aligned_cols=192 Identities=19% Similarity=0.233 Sum_probs=123.0
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
...||| .+.++.+.+.|+|.+++- | .|+ +...+.+.. .+++.+++ ...|+.+-+-.
T Consensus 27 ~y~~dP-----~~~a~~~~~~g~~~l~iv----D--Lda---------~~~~~~~~~---~~~~~~~~-~~~pl~~gGGI 82 (241)
T d1qo2a_ 27 FYEKDP-----VELVEKLIEEGFTLIHVV----D--LSN---------AIENSGENL---PVLEKLSE-FAEHIQIGGGI 82 (241)
T ss_dssp EESSCH-----HHHHHHHHHTTCCCEEEE----E--HHH---------HHHCCCTTH---HHHHHGGG-GGGGEEEESSC
T ss_pred EECCCH-----HHHHHHHHHCCCCEEEEE----e--ccc---------ccccCCcch---hheehhcc-cccchhhhhhh
Confidence 456899 899999999999999994 1 222 233333332 34444544 34698876522
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe---------------CCCChHHHHHHHHH
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT---------------TPTTPTDRMKAIVE 213 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li---------------sp~t~~eri~~i~~ 213 (311)
. ..+.++.+.+.|++-+++.....+.. .+.+.+.+++-..++-+ ......+-++.+.+
T Consensus 83 ~------s~~~~~~~~~~Ga~kVvi~s~~~~~~-~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 155 (241)
T d1qo2a_ 83 R------SLDYAEKLRKLGYRRQIVSSKVLEDP-SFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKE 155 (241)
T ss_dssp C------SHHHHHHHHHTTCCEEEECHHHHHCT-THHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHT
T ss_pred h------hhhhhhhccccccceEecCcccccCc-hhhhhhcccccceeeecccccccccccCcccceeeehhHHHHHhhc
Confidence 1 13567888999999999975443332 23344555554443321 12234566666666
Q ss_pred hCCceEEE--EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC------CcEEEEhhHhhch
Q 021527 214 ASEGFVYL--VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG------ADGVIVGSAMVKL 285 (311)
Q Consensus 214 ~a~gfiY~--vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G------ADGvIVGSaiv~~ 285 (311)
..-+-+.+ ++..| +.++.+ .++++++++.+++|+++++|+++.+|++++.+.| ++||+|||+|..-
T Consensus 156 ~g~~eii~~dId~dG---t~~G~d---~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~~g 229 (241)
T d1qo2a_ 156 YGLEEIVHTEIEKDG---TLQEHD---FSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEG 229 (241)
T ss_dssp TTCCEEEEEETTHHH---HTCCCC---HHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred cccceEEEeehhhhh---hccccc---hhhhhhhhccCCceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHHCC
Confidence 54444434 34333 333444 3678888888899999999999999999998754 8999999999642
Q ss_pred hhhcCCchhHHHHHHHHHH
Q 021527 286 LGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~ 304 (311)
- -.++++++|+|
T Consensus 230 ~-------l~~~~~k~~l~ 241 (241)
T d1qo2a_ 230 I-------LTVEVMKRYAR 241 (241)
T ss_dssp S-------SCHHHHHHHHC
T ss_pred C-------CCHHHHHHHhC
Confidence 1 23667777764
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=98.80 E-value=4.4e-07 Score=80.90 Aligned_cols=188 Identities=17% Similarity=0.180 Sum_probs=121.6
Q ss_pred CccEEEEEeCCCCCh-----hhHHHHHHHHHHCCCCEEEEcCCCCCCC-CChHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 021527 62 KVALIPYITAGDPDL-----STTAEALKLLDSCGSDIIELGVPYSDPL-ADGPVIQAAATRSLARGTNFNAILSMLKEVV 135 (311)
Q Consensus 62 ~~~li~yi~~G~P~~-----~~~~e~~~~L~~~GaD~IElG~PfsDP~-aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir 135 (311)
+..+|.=+=-..|.. -.-.+.++.++++||++|-+= .||. ..| + ++.++++|
T Consensus 45 ~~~vIAEiKr~SPS~G~i~~~dp~~~A~~y~~~GA~aiSVL---Te~~~F~G---------------s----~~dl~~v~ 102 (254)
T d1vc4a_ 45 GLSVIAEVKRQSPSEGLIREVDPVEAALAYARGGARAVSVL---TEPHRFGG---------------S----LLDLKRVR 102 (254)
T ss_dssp SCEEEEEECSCCTTTCCCCSCCHHHHHHHHHHTTCSEEEEE---CCCSSSCC---------------C----HHHHHHHH
T ss_pred CCeEEEEeeecCCCCCccccCCHHHHHHHHHhcCCceEEEE---cCcccccc---------------c----HHHHHHHH
Confidence 456777774445543 234788999999999999995 4543 234 2 34677888
Q ss_pred ccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh
Q 021527 136 PQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 136 ~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~ 214 (311)
+.+++||+---+. .- +.-+..++.+|||+|++. .+..++..++.+.+...|++.+.=+. + .+.++.....
T Consensus 103 ~~~~iPvLrKDFI----id--~~QI~ea~~~GADaVLLIaall~~~l~~l~~~A~~lgl~~LVEvh--~-~~El~~a~~~ 173 (254)
T d1vc4a_ 103 EAVDLPLLRKDFV----VD--PFMLEEARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVH--T-ERELEIALEA 173 (254)
T ss_dssp HHCCSCEEEESCC----CS--HHHHHHHHHTTCSEEEEEHHHHGGGHHHHHHHHHHHTCEEEEEEC--S-HHHHHHHHHH
T ss_pred HHcCCCcccCCcc----cc--HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCceEEEec--c-HHHHhhhhcC
Confidence 8899998875322 11 234667899999998874 44335567788999999999776553 3 3334444444
Q ss_pred CCceEEEEecCCccCCCCCCCch-HHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 215 SEGFVYLVSSIGVTGARASISGH-VQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~-~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
....+=+=.+.=.|- .++.+ ..++.+.+++. .+..++...||++++|++.+ +.|+|||.||++|++
T Consensus 174 ~a~iIGINnRdL~t~---~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv~~l-~~g~davLIGesLm~ 241 (254)
T d1vc4a_ 174 GAEVLGINNRDLATL---HINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMR 241 (254)
T ss_dssp TCSEEEEESBCTTTC---CBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTT-TTTCSEEEECHHHHT
T ss_pred CCCEEEEeccchhhh---hcchHHHHHhhhcccccCCCCEEEEccCCCCHHHHHHH-HcCCCEEEEChhhcC
Confidence 333332211111111 12222 22333334443 36778899999999999887 579999999999998
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=98.74 E-value=5.9e-07 Score=79.84 Aligned_cols=192 Identities=12% Similarity=0.203 Sum_probs=120.5
Q ss_pred HHHHHHcCCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCC-CChHHHHHHHHHHHHcCCCHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPL-ADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~-aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
++.++.+++..+|.=+=-..|.. ....++++.. ++||++|-+= .||- ..| +
T Consensus 32 ~~al~~~~~~~iIAEiKr~SPS~G~i~~~~d~~~~a~~y-e~GA~aiSVL---Td~~~F~G---------------s--- 89 (251)
T d1i4na_ 32 LEVLSGKERVKIIAEFKKASPSAGDINADASLEDFIRMY-DELADAISIL---TEKHYFKG---------------D--- 89 (251)
T ss_dssp HHHHCCSSSCEEEEEECSBCSSSCBSCTTCCHHHHHHHH-HHHCSEEEEE---CCCSSSCC---------------C---
T ss_pred HHHHhcCCCCeEEEeeecCCCCCCCCcCCccHHHHHHHH-hcCCcceEEe---cccCCCCC---------------C---
Confidence 34445556778888773334432 1345677766 5799999985 5553 334 2
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe-cC-CChhhHHHHHHHHHHcCCCeEEEeCCCCh
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV-PD-VPLEETESLQKEAMKNKIELVLFTTPTTP 204 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii-pD-lp~ee~~~~~~~~~~~gi~~I~lisp~t~ 204 (311)
++.++++|+.+++||+--=+ ... +--+..++..|||++++ .. |+.++..++.+.++..|++.+.=+. +
T Consensus 90 -~~~l~~vr~~~~~PiLrKDF----Iid--~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh--~- 159 (251)
T d1i4na_ 90 -PAFVRAARNLTCRPILAKDF----YID--TVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVH--S- 159 (251)
T ss_dssp -THHHHHHHTTCCSCEEEECC----CCS--THHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEEC--S-
T ss_pred -HHHHHHHhhcccCchhhhhh----hhC--HHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecccC--C-
Confidence 24677888889999766422 111 12356788899999766 34 4456788999999999999776543 3
Q ss_pred HHHHHHHHHhCCceEEEEe-cCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 205 TDRMKAIVEASEGFVYLVS-SIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs-~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+.++........-+.-+- +.-.| +..+.. ...++.... +..++...||+++++++.+ ..|+|||.||++
T Consensus 160 ~~El~~al~~~~a~iiGINnRdL~t-----~~vd~~-~~~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G~davLIG~s 232 (251)
T d1i4na_ 160 REDLEKVFSVIRPKIIGINTRDLDT-----FEIKKN-VLWELLPLVPDDTVVVAESGIKDPRELKDL-RGKVNAVLVGTS 232 (251)
T ss_dssp HHHHHHHHTTCCCSEEEEECBCTTT-----CCBCTT-HHHHHGGGSCTTSEEEEESCCCCGGGHHHH-TTTCSEEEECHH
T ss_pred HHHHHHHhcccccceeeeeecchhc-----cchhhh-HHHHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhCCCEEEEChH
Confidence 3444443333222233331 11111 111211 233333333 5788999999999999887 579999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
+++
T Consensus 233 Lm~ 235 (251)
T d1i4na_ 233 IMK 235 (251)
T ss_dssp HHH
T ss_pred HhC
Confidence 998
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=98.74 E-value=2.1e-07 Score=81.17 Aligned_cols=198 Identities=12% Similarity=0.142 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
++|...+++ ..+++-+...+| ++..+.++.|.++|+..||+- +++| +.
T Consensus 8 ~~i~~~l~~------~~iipvl~~~~~--~~a~~~~~al~~~Gi~~iEit--l~~p----------------------~a 55 (216)
T d1mxsa_ 8 ARIDAICEK------ARILPVITIARE--EDILPLADALAAGGIRTLEVT--LRSQ----------------------HG 55 (216)
T ss_dssp HHHHHHHHH------HSEEEEECCSCG--GGHHHHHHHHHHTTCCEEEEE--SSST----------------------HH
T ss_pred HHHHHHHHh------CCEEEEEECCCH--HHHHHHHHHHHHCCCCEEEEe--CCCh----------------------hH
Confidence 455555553 238888876665 899999999999999999994 3444 23
Q ss_pred HHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 128 LSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 128 ~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
++.++.++++ .++-++.-+-.| .+-++.+.++|++=++-|-+.. ++.+.|+++|+..++.+. |+.|
T Consensus 56 ~~~i~~l~~~~p~~~vGaGTV~~-------~~~~~~a~~aGa~FivsP~~~~----~v~~~a~~~~i~~iPGv~--TpsE 122 (216)
T d1mxsa_ 56 LKAIQVLREQRPELCVGAGTVLD-------RSMFAAVEAAGAQFVVTPGITE----DILEAGVDSEIPLLPGIS--TPSE 122 (216)
T ss_dssp HHHHHHHHHHCTTSEEEEECCCS-------HHHHHHHHHHTCSSEECSSCCH----HHHHHHHHCSSCEECEEC--SHHH
T ss_pred HHHHHHHHHhCCCcceeeeeeec-------HHHHHHHHhCCCCEEECCCCcH----HHHHHHHhcCCCccCCcC--CHHH
Confidence 5677888765 467777766544 4568889999999988887643 467788999999998874 5556
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCch---HHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGH---VQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~---~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
-+.. ...|+-++= . +|.+ -.++++.++.-. +++++.-+||+ .+++.+.+..|+-.++.||.+
T Consensus 123 i~~A---~~~G~~~vK-l---------FPA~~~~g~~~ikal~~p~p~~~fiptGGV~-~~n~~~yl~~~~v~avggs~l 188 (216)
T d1mxsa_ 123 IMMG---YALGYRRFK-L---------FPAEISGGVAAIKAFGGPFGDIRFCPTGGVN-PANVRNYMALPNVMCVGTTWM 188 (216)
T ss_dssp HHHH---HTTTCCEEE-E---------TTHHHHTHHHHHHHHHTTTTTCEEEEBSSCC-TTTHHHHHHSTTBCCEEECTT
T ss_pred HHHH---HHCCCCEEE-e---------ccccccccHHHHHHHhcccccCceeccCCCC-HHHHHHHHhcCCeEEEEcccc
Confidence 5433 344554331 0 1111 136888888865 79999999997 699999999998899999999
Q ss_pred hch--hhhcCCchhHHHHHHHHHHHHHhh
Q 021527 283 VKL--LGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 283 v~~--~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
+.. ++ .+ ..+++++.+++..+.
T Consensus 189 ~~~~~i~-~~----d~~~i~~~a~~~~~~ 212 (216)
T d1mxsa_ 189 LDSSWIK-NG----DWARIEACSAEAIAL 212 (216)
T ss_dssp SCHHHHH-TT----CHHHHHHHHHHHHHT
T ss_pred CCHHHhh-cC----CHHHHHHHHHHHHHH
Confidence 963 32 22 245666666665544
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=98.72 E-value=5.8e-08 Score=88.15 Aligned_cols=179 Identities=20% Similarity=0.176 Sum_probs=109.4
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi 142 (311)
.++.=+ +..+.+.+.+.++.+.+++ +|++|+.+ |-|-.++- .+.+.+.+.+.++++++++..++|+
T Consensus 95 pvi~si--~~~~~~~~~~~~~~~~~~~~ad~ielNi--scPn~~~~---------~~~~~~~~~~~~~~~~v~~~~~~pv 161 (311)
T d1juba_ 95 PIFFSI--AGMSAAENIAMLKKIQESDFSGITELNL--SCPNVPGE---------PQLAYDFEATEKLLKEVFTFFTKPL 161 (311)
T ss_dssp CCEEEE--CCSSHHHHHHHHHHHHHSCCCSEEEEES--CCCCSSSC---------CCGGGCHHHHHHHHHHHTTTCCSCE
T ss_pred Cceeec--cccccchhHHHHHHHhhccccceeeecc--cccccccc---------ccccccHHHHHHHHHHhhcccccce
Confidence 344433 4456677888888888876 89999974 44544430 0113455667788999999899999
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
++-..-+.. ...++..++.+.+.|++|+...... ..-....+++...+. ....++
T Consensus 162 ~vKl~p~~~-~~~~~~~~~~~~~~~~~~i~~~~~~----------------~~~~~~~~~~~~~~~----~~~~~~---- 216 (311)
T d1juba_ 162 GVKLPPYFD-LVHFDIMAEILNQFPLTYVNSVNSI----------------GNGLFIDPEAESVVI----KPKDGF---- 216 (311)
T ss_dssp EEEECCCCS-HHHHHHHHHHHTTSCCCEEEECCCE----------------EEEECEETTTTEESC----SGGGGE----
T ss_pred eecccccch-hhHHHHHHHHHHhhccceEeccccc----------------ccccccccccccccc----cccccc----
Confidence 886533211 0122344555666777777654321 011111222210000 001111
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
-|.+|. .+.+...+.+.++++.+ ++||+..+||+|++|+.+.+.+|||.|-++|+++.
T Consensus 217 --gG~sg~--~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~ 276 (311)
T d1juba_ 217 --GGIGGA--YIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp --EEEESG--GGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred --CCcccc--ccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHh
Confidence 123332 22233456788887765 59999999999999999999999999999999976
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=3.6e-07 Score=81.39 Aligned_cols=189 Identities=14% Similarity=0.123 Sum_probs=116.1
Q ss_pred HcCCccEEEEEeCCCCChh------hHHHHHHHHHHCCCCEEEEcCCCCCC-CCChHHHHHHHHHHHHcCCCHHHHHHHH
Q 021527 59 KQGKVALIPYITAGDPDLS------TTAEALKLLDSCGSDIIELGVPYSDP-LADGPVIQAAATRSLARGTNFNAILSML 131 (311)
Q Consensus 59 ~~~~~~li~yi~~G~P~~~------~~~e~~~~L~~~GaD~IElG~PfsDP-~aDGp~Iq~a~~~Al~~G~~~~~~~~~i 131 (311)
++++..+|.=+=...|... .-.++. .+.++||+.|-+= .|| +..| + ++.+
T Consensus 44 ~~~~~~iIAEiKraSPSkG~i~~~~~p~~~a-~~~~~gA~aiSVL---Te~~~F~G---------------s----~~~l 100 (254)
T d1piia2 44 QGARTAFILECKKASPSKGVIRDDFDPARIA-AIYKHYASAISVL---TDEKYFQG---------------S----FNFL 100 (254)
T ss_dssp CSSSCEEEEEECSEETTTEESCSSCCHHHHH-HHHTTTCSEEEEE---CCSTTTCC---------------C----TTHH
T ss_pred hcCCCceehhhhhcccchhhhcccchhHHHH-HHHHhccCceEEe---cccccCCC---------------C----HHHH
Confidence 3567788876633333321 123444 4778999999995 444 2334 2 2467
Q ss_pred HHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHH
Q 021527 132 KEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMK 209 (311)
Q Consensus 132 ~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~ 209 (311)
+.+|+.+++|+.--=+ .. . +--+..+..+|||.+++- =|..++..++.+.++..|++.+.=+. + ++.++
T Consensus 101 ~~v~~~~~~PiLrKDF----Ii-d-~~QI~ear~~GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh--~-~~El~ 171 (254)
T d1piia2 101 PIVSQIAPQPILCKDF----II-D-PYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVS--N-EEEQE 171 (254)
T ss_dssp HHHHHHCCSCEEEESC----CC-S-HHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEEC--S-HHHHH
T ss_pred HHHHhccccccchhcc----cC-c-HHHHHHHHhhccchhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhc--c-HHHHH
Confidence 7788889999755322 11 1 223567889999988773 35556788999999999999865543 3 34444
Q ss_pred HHHHhCCceEEEEecCCccCCCCCCCc-hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 210 AIVEASEGFVYLVSSIGVTGARASISG-HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 210 ~i~~~a~gfiY~vs~~G~TG~~~~~~~-~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
...+....++=+=.+.=.|- ..+. ...++...+. -+..++...||++++|++.+ ..|+|||.||++|++.
T Consensus 172 ~a~~~~a~iIGINnRnL~tf---~vd~~~t~~L~~~ip--~~~~~VsESGI~~~~d~~~l-~~g~davLiGeslm~~ 242 (254)
T d1piia2 172 RAIALGAKVVGINNRDLRDL---SIDLNRTRELAPKLG--HNVTVISESGINTYAQVREL-SHFANGFLIGSALMAH 242 (254)
T ss_dssp HHHHTTCSEEEEESEETTTT---EECTHHHHHHHHHHC--TTSEEEEESCCCCHHHHHHH-TTTCSEEEECHHHHTC
T ss_pred HHHhhcccccCccccchhhh---hhhhHHHHHHHHhCC--CCCEEEEcCCCCCHHHHHHH-HcCCCEEEEChHHhCC
Confidence 44444444332211110110 1121 1223333332 25678889999999999887 5799999999999983
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=98.67 E-value=1.7e-07 Score=83.33 Aligned_cols=169 Identities=18% Similarity=0.256 Sum_probs=108.2
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc-chhccCH-
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN-PILKRGV- 156 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n-~i~~~g~- 156 (311)
+.+.+...+++|||-|||+ ++-.. .|.|.. +..++.+++.+++||.+|.--. .-|.|.-
T Consensus 9 s~~~a~~A~~~GAdRIELc---~~l~~--------------GGlTPS--~g~i~~~~~~~~iPv~vMIRPR~GdF~Ys~~ 69 (247)
T d1twda_ 9 SMECALTAQQNGADRVELC---AAPKE--------------GGLTPS--LGVLKSVRQRVTIPVHPIIRPRGGDFCYSDG 69 (247)
T ss_dssp SHHHHHHHHHTTCSEEEEC---BCGGG--------------TCBCCC--HHHHHHHHHHCCSCEEEBCCSSSSCSCCCHH
T ss_pred CHHHHHHHHHcCCCEEEEc---CCccc--------------CCCCCC--HHHHHHHHHhcCCCeEEEEecCCCCCCCCHH
Confidence 3577888899999999997 33222 245443 3467777778899999994211 1122232
Q ss_pred -----HHHHHHHHHcCCcEEEecCCC------hhhHHHHHHHHHHcCCCeEEE----eCCCChHHHHHHHHHhCCceEEE
Q 021527 157 -----DNFMSTVRDIGIRGLVVPDVP------LEETESLQKEAMKNKIELVLF----TTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 157 -----~~fi~~~~~aGadGviipDlp------~ee~~~~~~~~~~~gi~~I~l----isp~t~~eri~~i~~~a~gfiY~ 221 (311)
.+.++.+++.|+|||++.=|. .+...++.+.++ +++..+- ..+ .+.+.++.+.+. ||--+
T Consensus 70 E~~~M~~di~~~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~--~l~vTFHRAfD~~~-d~~~al~~Li~l--G~~rI 144 (247)
T d1twda_ 70 EFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG--PLAVTFHRAFDMCA-NPLYTLNNLAEL--GIARV 144 (247)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT--TSEEEECGGGGGCS-CHHHHHHHHHHH--TCCEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEECCCCCccHHHHHHHHHHhc--ccCeeeehhhhhhC-CHHHHHHHHHhc--CCCeE
Confidence 346677899999999996333 233556666553 5655542 222 345667777665 67655
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
.| +|........ .+.|+++.+..+ .-|++|+||+ ++|+.++.+.|++-+=
T Consensus 145 LT----SGg~~~a~~G-~~~L~~L~~~a~~~iIm~GgGI~-~~Ni~~l~~~g~~e~H 195 (247)
T d1twda_ 145 LT----SGQKSDALQG-LSKIMELIAHRDAPIIMAGAGVR-AENLHHFLDAGVLEVH 195 (247)
T ss_dssp EE----CTTSSSTTTT-HHHHHHHHTSSSCCEEEEESSCC-TTTHHHHHHHTCSEEE
T ss_pred ec----cCCCCchhHH-HHHHHHHHHhcCCcEEEecCCCC-HHHHHHHHHcCCCEEE
Confidence 54 3433333333 456777766543 3488899997 5999999999988764
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.51 E-value=1.8e-06 Score=73.96 Aligned_cols=190 Identities=15% Similarity=0.173 Sum_probs=114.7
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
.+-...++.++..++++.+.+ .+|++|+|.|+ + +..|. +.+++++++.+.||++..-
T Consensus 3 ~vALD~~~~~~a~~~~~~l~~-~v~~iKvG~~l---------~-------~~~G~------~~i~~l~~~~~~~if~DlK 59 (206)
T d2czda1 3 VLALDVYEGERAIKIAKSVKD-YISMIKVNWPL---------I-------LGSGV------DIIRRLKEETGVEIIADLK 59 (206)
T ss_dssp EEECCCCSHHHHHHHHHHHGG-GCSEEEEEHHH---------H-------HHHCT------THHHHHHHHHCCEEEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhCC-cccEEEECHHH---------H-------hhcCH------HHHHHHHHhcCCeEEEEee
Confidence 456788999999999998765 59999999554 2 22343 4677787767888888765
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC---------ChHHHHHHHHHhCC--
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT---------TPTDRMKAIVEASE-- 216 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~---------t~~eri~~i~~~a~-- 216 (311)
+.++-.+ ...+++.+.++|+|.+.++-..-.+ ....+++.+-. +.+...+ .-.++..+++....
T Consensus 60 ~~Di~~t-~~~~~~~~~~~gad~~Tvh~~~g~~---~i~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~a~~~~~~ 134 (206)
T d2czda1 60 LADIPNT-NRLIARKVFGAGADYVIVHTFVGRD---SVMAVKELGEI-IMVVEMSHPGALEFINPLTDRFIEVANEIEPF 134 (206)
T ss_dssp ECSCHHH-HHHHHHHHHHTTCSEEEEESTTCHH---HHHHHHTTSEE-EEECCCCSGGGGTTTGGGHHHHHHHHHHHCCS
T ss_pred eeeeccc-chheehhhccccccEEEeeecccHH---HHHHhhhcccc-eEEEeccCCcccccccHHHHHHHHHHHhcccc
Confidence 5444322 3467788888999999997554333 23344554422 2221111 11234444444332
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEE-eeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCch
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAV-GFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 293 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v-GfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~ 293 (311)
|++. .+ ..+ +.++.+|+.. +..+++ |.|... .+.+++.+.|||-+|||+++++. .+|
T Consensus 135 g~~~-------~~----~~~---~~~~~~r~~~~~~~~i~~pGI~~~~-~~~~~ai~~Gad~iVvGR~I~~a----~dP- 194 (206)
T d2czda1 135 GVIA-------PG----TRP---ERIGYIRDRLKEGIKILAPGIGAQG-GKAKDAVKAGADYIIVGRAIYNA----PNP- 194 (206)
T ss_dssp EEEC-------CC----SST---HHHHHHHHHSCTTCEEEECCCCSST-THHHHHHHHTCSEEEECHHHHTS----SSH-
T ss_pred cccc-------cc----cCc---hhhhhhhhhhcccceEECCCccccC-CCHHHHHHhCCCEEEEChhhccC----CCH-
Confidence 3221 11 111 3466666654 344433 445543 56777888999999999999973 223
Q ss_pred hHHHHHHHHHHHHH
Q 021527 294 EGLKELEKFAKSLK 307 (311)
Q Consensus 294 ~~~~~~~~~~~~l~ 307 (311)
.+.++++.++||
T Consensus 195 --~~aa~~i~~~ik 206 (206)
T d2czda1 195 --REAAKAIYDEIR 206 (206)
T ss_dssp --HHHHHHHHHHHC
T ss_pred --HHHHHHHHHHhC
Confidence 455667766664
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.46 E-value=1e-07 Score=86.90 Aligned_cols=196 Identities=20% Similarity=0.224 Sum_probs=107.0
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHH---HHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLL---DSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM 138 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L---~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~ 138 (311)
++.++.-+. | .+.+.+.+.++.+ .+.|+|+|||.+ |.|-.+|. + ..+.+.+.+.++++.+|+..
T Consensus 91 ~~pii~si~-g-~~~~~~~~~~~~~~~~~~~~ad~iElNi--ScPn~~~~-------~--~~~~~~~~~~~i~~~v~~~~ 157 (312)
T d2b4ga1 91 RKPLFLSMS-G-LSVEESVEMVKKLVPITKEKGTILELNL--SCPNVPGK-------P--QVGYDFDTTRTYLQKVSEAY 157 (312)
T ss_dssp TCCEEEEEC-C-SSHHHHHHHHHHHHHHHHHHCCEEEEEC--CCCCSTTC-------C--CGGGCHHHHHHHHHHHHHHH
T ss_pred ccceecccc-c-cccccHHHHHHHHHHhhhhcccceeecc--ccCCcCcc-------h--hhhccHHHHHHHHHHhhccc
Confidence 445666553 3 3445566666544 567899999974 45655541 0 12344556667888888888
Q ss_pred CCcEEEEecCcchhccCHHHH---HHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh
Q 021527 139 SCPIALFTYYNPILKRGVDNF---MSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~f---i~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~ 214 (311)
++|+++-.--+ . ...++ .+.+.+.+..+++.. +- +..-..+.+.+..- ....
T Consensus 158 ~~pi~vKl~p~--~--~~~~~~~~~~~~~~~~~~~~i~~~nt----------------~~~~~~~~~~~~~~----~~~~ 213 (312)
T d2b4ga1 158 GLPFGVKMPPY--F--DIAHFDMAAAVLNDFPLVKFITCVNS----------------IGNGLVIDPANETV----VIKP 213 (312)
T ss_dssp CSCEEEEECCC--C--CHHHHHHHHHHHTTCTTEEEEEECCC----------------EEEEECEETTTTEE----SCCG
T ss_pred cccceeccccc--c--chhHHHHHHHHHHhhhhhhhhhhccc----------------ccccccccccCCCc----cccc
Confidence 89988754222 1 11222 222333333333221 10 00011111111100 0000
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCC-c
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS-P 292 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~-~ 292 (311)
..++ -|.+|. .+.+-..+++.++++.+ +.||+.++||.+++|+.+.+.+|||.|-|+|+++.. +.. .
T Consensus 214 ~~~~------GGlSG~--~l~~~al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~---Gp~~i 282 (312)
T d2b4ga1 214 KQGF------GGLGGK--YVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDE---GPIIF 282 (312)
T ss_dssp GGGE------EEEEEG--GGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHH---CTTHH
T ss_pred cccc------cCcccc--cccchhhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhhHhc---CcHHH
Confidence 0111 123332 23333456788887765 578889999999999999999999999999999762 211 2
Q ss_pred hhHHHHHHHHHHH
Q 021527 293 EEGLKELEKFAKS 305 (311)
Q Consensus 293 ~~~~~~~~~~~~~ 305 (311)
++..+++.+|+++
T Consensus 283 ~~i~~~L~~~l~~ 295 (312)
T d2b4ga1 283 ARLNKELQEIMTN 295 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445566666543
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=98.44 E-value=4.3e-07 Score=81.93 Aligned_cols=177 Identities=17% Similarity=0.200 Sum_probs=107.0
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHH-CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDS-CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~-~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
...+|.=+ +..+.+...+.++.+.+ +|+|.||+.+-. |-..+.- ...+...+...++++.+++..++
T Consensus 98 ~~pii~si--~~~~~~~~~~~~~~~~~~~g~d~ielN~~c--P~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~ 165 (311)
T d1ep3a_ 98 ELPIIANV--AGSEEADYVAVCAKIGDAANVKAIELNISC--PNVKHGG--------QAFGTDPEVAAALVKACKAVSKV 165 (311)
T ss_dssp TSCEEEEE--CCSSHHHHHHHHHHHTTSTTEEEEEEECCS--EEGGGTT--------EEGGGCHHHHHHHHHHHHHHCSS
T ss_pred CCcccccc--cchhhhHHHHHHHHHhhcccccccccccCC--Ccccccc--------cccccCHHHHHHHHHHHHhccCC
Confidence 34454433 55666888888888755 699999997533 3221100 00112233334455666777888
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
|+.+-.-.+. ....++.+.+.++|++|+++.+-.... . ....+. +. . ...+.
T Consensus 166 p~~vkl~~~~---~~~~~~a~~~~~~~~~~~~~~n~~~~~-------------~----~~~~~~-~~---~--~~~~~-- 217 (311)
T d1ep3a_ 166 PLYVKLSPNV---TDIVPIAKAVEAAGADGLTMINTLMGV-------------R----FDLKTR-QP---I--LANIT-- 217 (311)
T ss_dssp CEEEEECSCS---SCSHHHHHHHHHTTCSEEEECCCEEEC-------------C----BCTTTC-SB---S--STTSC--
T ss_pred Ceeeeecccc---cchHHHHHHHHHhhhheeEEEeecccc-------------c----cccccc-cc---c--ccccC--
Confidence 9877532221 123567888888999998876432100 0 000000 00 0 00010
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.|..|. .+.+...++++++++.+++||+..+||.|++|+.+.+..|||+|-|||+++.
T Consensus 218 ----~g~sG~--~i~~~~l~~i~~i~~~~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~ 275 (311)
T d1ep3a_ 218 ----GGLSGP--AIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA 275 (311)
T ss_dssp ----EEEESG--GGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH
T ss_pred ----CCCCCC--cccchhHHHHHHHhhhcceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHc
Confidence 011221 2233446789999999999999999999999999999999999999999874
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.43 E-value=2.5e-07 Score=87.80 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=77.2
Q ss_pred cCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CC
Q 021527 174 PDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TK 251 (311)
Q Consensus 174 pDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~ 251 (311)
||+..++..+..+.+.++|++-+.....++. +. .......+ .-|.+|. .+.+--.+.|+++++.+ ++
T Consensus 275 Pd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~--~~-~~~~~~~~------~GGlSG~--~l~~~al~~v~~v~~~~~~~i 343 (409)
T d1tv5a1 275 PDLNQEQKKEIADVLLETNIDGMIISNTTTQ--IN-DIKSFENK------KGGVSGA--KLKDISTKFICEMYNYTNKQI 343 (409)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEECCCBSC--CC-CCGGGTTC------CSEEEEH--HHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCchhhHHHHHHHHhccccceeccccccc--cc-cccccccc------CCcccch--hHHHHHHHHHHHHHHHcCCCc
Confidence 7888777888888888888887776553322 10 00001111 0122332 12333457788898877 48
Q ss_pred cEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCC-chhHHHHHHHHHHH
Q 021527 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS-PEEGLKELEKFAKS 305 (311)
Q Consensus 252 Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~-~~~~~~~~~~~~~~ 305 (311)
||+.-+||.+++|+.+.+.+|||.|-|||+++.. +.. .++-.+++++|+++
T Consensus 344 pIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~---Gp~~v~~I~~~L~~~l~~ 395 (409)
T d1tv5a1 344 PIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN---GMKSAVQIKRELNHLLYQ 395 (409)
T ss_dssp CEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHH---GGGHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHcCCCHHhhhhHHHhc---ChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998752 111 13345566666653
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=2.2e-05 Score=69.52 Aligned_cols=196 Identities=17% Similarity=0.244 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
|++.++++ +|+..+-.++...+| ..++.+..+|.|++.|+...+ .++.+++
T Consensus 5 N~lk~~l~----~g~~~~G~~~~~~~p------~~~ei~a~~G~Dfv~iD~EHg-------------------~~~~~~~ 55 (253)
T d1dxea_ 5 NKFKAALA----AKQVQIGCWSALSNP------ISTEVLGLAGFDWLVLDGEHA-------------------PNDISTF 55 (253)
T ss_dssp CHHHHHHH----TTCCEEEEEECSCSH------HHHHHHTTSCCSEEEEESSSS-------------------SCCHHHH
T ss_pred hHHHHHHH----CCCCEEEEEecCCCH------HHHHHHHcCCCCEEEEecccC-------------------CCChhHH
Confidence 45555444 677888888887666 677788899999999986653 2566677
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHH------------------
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEA------------------ 188 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~------------------ 188 (311)
.+++..++. .+++.++-.-.+ -...+..+.+.|++||++|.+-- ||++++++.+
T Consensus 56 ~~~i~a~~~-~g~~~~VRvp~~------~~~~i~~~LD~Ga~GIivP~v~s~eea~~~v~~~~ypP~G~Rg~~~~~~~~~ 128 (253)
T d1dxea_ 56 IPQLMALKG-SASAPVVRVPTN------EPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANM 128 (253)
T ss_dssp HHHHHHTTT-CSSEEEEECSSS------CHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGG
T ss_pred HHHHHHHhc-cCCCceecCCCC------CHHHHHHHHhcCccEEEecccCCHHHHHHHHHhheeCCCCCcCcCcceeccc
Confidence 777777654 445555544322 24578899999999999998753 4555555543
Q ss_pred --------HHcCCCeEEEeCCCChH--HHHHHHHHhC-CceEEEE-----ecCCccCCCCCCCchHHHHHHHHhhcC---
Q 021527 189 --------MKNKIELVLFTTPTTPT--DRMKAIVEAS-EGFVYLV-----SSIGVTGARASISGHVQTLLREIKESS--- 249 (311)
Q Consensus 189 --------~~~gi~~I~lisp~t~~--eri~~i~~~a-~gfiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~~--- 249 (311)
...+=+.+..+.-.|.+ +.+++|++.. -+.+|+. ...|..|.. .++++.+.++++.+.+
T Consensus 129 ~~~~~~~~~~~n~~~~vi~~IEt~~av~nleeI~av~giD~i~iGp~DLs~slG~~g~~--~~p~v~~ai~~v~~~~~~~ 206 (253)
T d1dxea_ 129 FGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNA--SHPDVQKAIQHIFNRASAH 206 (253)
T ss_dssp GGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHHHTSTTCCEEEECHHHHHHHTTCTTCT--TSHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccceEEEeecccHHHHHHHHHHhccCCCceEEEecCcHHhhccCCCCC--CChhHHHHHHHHHHHHHHc
Confidence 11111222233334433 5567776532 2456663 245666643 3566777777766543
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
++|+ |.-..+++++++..+.|++-+++|+=..
T Consensus 207 gk~~--g~~~~~~~~~~~~~~~G~~~i~~g~D~~ 238 (253)
T d1dxea_ 207 GKPS--GILAPVEADARRYLEWGATFVAVGSDLG 238 (253)
T ss_dssp TCCE--EEECCSHHHHHHHHHTTCCEEEEEEHHH
T ss_pred CCCe--EEecCCHHHHHHHHHcCCCEEEehHHHH
Confidence 5665 4445689999999999999999997653
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.36 E-value=5.8e-06 Score=71.08 Aligned_cols=181 Identities=15% Similarity=0.203 Sum_probs=110.7
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
.+-...++.++..++++.+. ..++++++|.|+ + +..| .+.+++++++.+.||++..-
T Consensus 6 ~lAlD~~~~~~a~~l~~~~~-~~v~~iKig~~l---------~-------~~~G------~~~v~~l~~~~~~~i~~D~K 62 (212)
T d1km4a_ 6 ILAMDLMNRDDALRVTGEVR-EYIDTVKIGYPL---------V-------LSEG------MDIIAEFRKRFGCRIIADFA 62 (212)
T ss_dssp EEEECCSSHHHHHHHHHHHT-TTCSEEEEEHHH---------H-------HHHC------THHHHHHHHHHCCEEEEEEE
T ss_pred EEEecCCCHHHHHHHHHHhC-CCCcEEEECHHH---------H-------HhcC------HHHHHHHHHhcccceehhhh
Confidence 45668899999999999876 569999999554 1 2233 34678888777788887654
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeCCCChH-------HHHHHHHHhC--Cc
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTTPTTPT-------DRMKAIVEAS--EG 217 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lisp~t~~-------eri~~i~~~a--~g 217 (311)
+.++-.+ ..++++.+.+.|+|.+.+.-+.-.+ ...+.+.+++++...+.+ +..+.. ....+..+.+ .|
T Consensus 63 ~~DIg~t-~~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l-~~~s~~~~~~~~~~~~~~~~~~~~~~g 140 (212)
T d1km4a_ 63 VADIPET-NEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLL-TEMSHPGAEMFIQGAADEIARMGVDLG 140 (212)
T ss_dssp ECSCHHH-HHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEE-CSCSSGGGGTTHHHHHHHHHHHHHHHT
T ss_pred hhccccH-HHHhHhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccc-hhhcchhhhhhhhhHHHHHHHHHHHhC
Confidence 4444322 1457777888999999998655333 556777888888654443 333321 1122222211 12
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCH-HHHHHHHHcCCcEEEEhhHhhch
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKP-EHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~-e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+.-++ |.. .. .+.++++|+.. +..+++-.||+.. .+..+.. .|||.+|||++|.+.
T Consensus 141 ~~g~v------~~~--~~---~~~i~~ir~~~~~~~~~vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~a 198 (212)
T d1km4a_ 141 VKNYV------GPS--TR---PERLSRLREIIGQDSFLISPGVGAQGGDPGETL-RFADAIIVGRSIYLA 198 (212)
T ss_dssp CCEEE------CCT--TC---HHHHHHHHHHHCSSSEEEECCBSTTSBCHHHHT-TTCSEEEECHHHHTS
T ss_pred Ccccc------ccc--cC---HHHHhhhhhccCCceeEEcCccccCCCCHHHHH-hhCCEEEECchhccC
Confidence 21111 111 11 24577888765 4456676677421 2333333 469999999999973
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=2.3e-06 Score=78.52 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=42.8
Q ss_pred chHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 236 GHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 236 ~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+...+.++++++.+ ++||+..+||.|.+|+.+.+.+|||.|-|||+++.
T Consensus 273 ~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~ 323 (336)
T d1f76a_ 273 LKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp HHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHh
Confidence 33456788888876 68999999999999999999999999999999864
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.3e-06 Score=81.13 Aligned_cols=169 Identities=16% Similarity=0.160 Sum_probs=97.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCCh-HHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADG-PVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDG-p~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~ 153 (311)
+...+........+.|+|++|+.+ |-|-.++ ...+...... .....+.+....++...++|+++-.--|. ..
T Consensus 161 ~~~~~~~~~~~~~~~~ad~lelNi--ScPn~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~-~~ 233 (367)
T d1d3ga_ 161 DAAEDYAEGVRVLGPLADYLVVNV--SSPNTAGLRSLQGKAELR----RLLTKVLQERDGLRRVHRPAVLVKIAPDL-TS 233 (367)
T ss_dssp CHHHHHHHHHHHHGGGCSEEEEES--CCTTSTTC----CHHHHH----HHHHHHHHHHHTSCGGGCCEEEEEECSCC-CH
T ss_pred HHHHHHHHHHHHhhhccccccccc--ccccccccccccccchhh----hHHHHHHHhhhhcccccCCccccccCccc-ch
Confidence 344566777777888999999975 3454432 1111100000 00112223333444456789888654331 11
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS 233 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~ 233 (311)
..+.+.++.+.++|++|++..+-.... . ....+...+ . ..|..|. .
T Consensus 234 ~~i~~~a~~~~~~g~~gi~~~nt~~~~-------------~----~~~~~~~~~-------~--------~gg~sG~--~ 279 (367)
T d1d3ga_ 234 QDKEDIASVVKELGIDGLIVTNTTVSR-------------P----AGLQGALRS-------E--------TGGLSGK--P 279 (367)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCBSCC-------------C----TTCCCTTTT-------S--------SSEEEEG--G
T ss_pred hhhhhhHHHHHhhhhheeecccccccc-------------c----ccccccccc-------c--------ccccccc--c
Confidence 234567778888889988776432110 0 000010000 0 1122232 2
Q ss_pred CCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 234 ISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+-....++.+++.+ ++||+..+||.+++|+.+.+.+|||.|-|||+++.
T Consensus 280 ~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~ 332 (367)
T d1d3ga_ 280 LRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF 332 (367)
T ss_dssp GHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred chhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHh
Confidence 3333456778887755 69999999999999999999999999999999864
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=98.31 E-value=2.8e-05 Score=70.39 Aligned_cols=159 Identities=13% Similarity=0.191 Sum_probs=91.8
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+..+..++.|.|.+++.+......... .. ..+.....+.++++++..+.|+++..--|.. ..+.
T Consensus 110 ~~~~~~~~~~g~~ai~~~~~~~~~~~~~--------~~---~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~----~~~~ 174 (329)
T d1p0ka_ 110 AQAKEAVEMIGANALQIHLNVIQEIVMP--------EG---DRSFSGALKRIEQICSRVSVPVIVKEVGFGM----SKAS 174 (329)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTTTC-------------------CTTHHHHHHHHHHHCSSCEEEEEESSCC----CHHH
T ss_pred HHHHHHHHHcCCCEEEecccccchhhhc--------cc---cccccchHHHHHHHHHHcCCCcEEEecCCcc----hHHH
Confidence 3445666778999999864331111110 00 1122344678889998899999886544421 2456
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQ 239 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~ 239 (311)
+..+.++|+|++++..-. | -.+.++.+. | .. .+ .|.... ... +...
T Consensus 175 a~~~~~~GaD~i~v~~~g--------------G---~~~~~~~~~--~--~~----~~-------~g~~~~-~~~-~~~~ 220 (329)
T d1p0ka_ 175 AGKLYEAGAAAVDIGGYG--------------G---TNFSKIENL--R--RQ----RQ-------ISFFNS-WGI-STAA 220 (329)
T ss_dssp HHHHHHHTCSEEEEEC----------------------------------------CC-------GGGGTT-CSC-CHHH
T ss_pred HHHHHhcCCCEEEEcCCC--------------C---CCccccchh--h--cc----cC-------ccchhH-hHH-HHHH
Confidence 677889999999886321 1 000111110 0 00 00 011110 112 2233
Q ss_pred HHHHHHhh-cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 240 TLLREIKE-SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 240 ~~l~~vk~-~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
. +.+++. ..++||++.+||++..|+.+.+..|||.|-+|+.+...+..
T Consensus 221 ~-l~~~~~~~~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~ 269 (329)
T d1p0ka_ 221 S-LAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTD 269 (329)
T ss_dssp H-HHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred H-HHHHHhhcCCceEEEcCCcccHHHHHHHHHcCCCchhccHHHHHHhcc
Confidence 3 333333 34799999999999999999999999999999999987753
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.26 E-value=9.7e-06 Score=71.37 Aligned_cols=194 Identities=18% Similarity=0.263 Sum_probs=108.0
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+.+ ..+|++++=+-+.=-|...++ ..++++++++ ..+ +.++. |
T Consensus 18 TGky~s~~~~~~ai---~aSgaeiVTVAvRR~~~~~~~---------------~~~~l~~~i~----~~~--~~~LP--N 71 (243)
T d1wv2a_ 18 TGKYKDLDETRRAI---EASGAEIVTVAVRRTNIGQNP---------------DEPNLLDVIP----PDR--YTILP--N 71 (243)
T ss_dssp CSCSSSHHHHHHHH---HHSCCSEEEEEGGGCCC----------------------------C----TTT--SEEEE--E
T ss_pred cCCCCCHHHHHHHH---HHhCCCEEEEEccccccCCCc---------------ccchHHHhcc----ccC--eeecc--c
Confidence 66778777766654 568999998854432211110 0011222221 122 23332 4
Q ss_pred chhccCHHHHHH---HHHHcC-C-cEEEe---cC----CCh-hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 150 PILKRGVDNFMS---TVRDIG-I-RGLVV---PD----VPL-EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aG-a-dGvii---pD----lp~-ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
+--.+..++-++ .+.+.+ . +=+-+ +| +|. .|..+-.+.+-+.|+.+.++++|+-.. .+.+.. -
T Consensus 72 TAGc~taeeAv~~A~larE~~~~~~~iKLEVi~d~~~L~Pd~~etl~Aa~~Lv~egF~Vlpy~~~D~v~--ak~le~--~ 147 (243)
T d1wv2a_ 72 TAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPII--ARQLAE--I 147 (243)
T ss_dssp CTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHH--HHHHHH--S
T ss_pred ccccccHHHHHHHHHHHHHHhCCCceEEEeeeccccccCCcHHHHHHHHHHhhcCceEEEeccCCCHHH--HhHHHH--c
Confidence 443444555444 345543 3 33222 33 221 133344455567899999999876322 222322 2
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHH
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 296 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~ 296 (311)
|..-+++.--.-|+..++.. ...++.+++..++||+|+-||.+|+|+.+..+.|+|||-|.|++.+. .+|..+.
T Consensus 148 Gc~~vMplgsPIGsg~Gi~n--~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa~A----~dP~~mA 221 (243)
T d1wv2a_ 148 GCIAVMPLAGLIGSGLGICN--PYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHA----KDPVMMA 221 (243)
T ss_dssp CCSEEEECSSSTTCCCCCSC--HHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTS----SSHHHHH
T ss_pred Cceeeeeccccccccccccc--HHHHHhccccCCcceEeecccCCHHHHHHHHHccCCEEEechHhhcC----CCHHHHH
Confidence 43334433223333334433 24577777878999999999999999999999999999999999883 3454444
Q ss_pred HHH
Q 021527 297 KEL 299 (311)
Q Consensus 297 ~~~ 299 (311)
+.+
T Consensus 222 ~A~ 224 (243)
T d1wv2a_ 222 EAM 224 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.21 E-value=1e-05 Score=70.89 Aligned_cols=183 Identities=19% Similarity=0.258 Sum_probs=108.8
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+.+ +.+|++++=+.+==-|+- + .+-++ ++..|.. .++.+.= |
T Consensus 18 TgkY~s~~~~~~ai---~aSgaeiVTVAlRR~~~~-~---------------~~~~~---~l~~i~~-~~~~lLP----N 70 (251)
T d1xm3a_ 18 TGKYPSFDIQKEAV---AVSESDILTFAVRRMNIF-E---------------ASQPN---FLEQLDL-SKYTLLP----N 70 (251)
T ss_dssp CSCSSCHHHHHHHH---HHHTCSEEEEETTSSTTC--------------------------CTTCCG-GGSEEEE----E
T ss_pred cCCCCCHHHHHHHH---HHhCCCEEEEEEeeecCc-C---------------CCCcc---hhhhccc-cceEEcc----c
Confidence 77888877665554 559999999853322210 0 00111 3323321 1222332 4
Q ss_pred chhccCHHHHHH---HHHHcCCcEEE----ecC----CC-hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGLV----VPD----VP-LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGvi----ipD----lp-~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+--.+..++-++ .+.+++-.-+| ++| +| +.|..+-.+.+-+.|+.+.++++++-. -.+++.+. |
T Consensus 71 TAGc~tA~EAvr~A~lARE~~~t~~IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlpY~~~D~v--~ak~Le~~--G 146 (251)
T d1xm3a_ 71 TAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVV--LARKLEEL--G 146 (251)
T ss_dssp CTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHH--HHHHHHHH--T
T ss_pred hHHHhhHHHHHHHHHHHHHhcCCceEEEEEecCCCCcCCCHHHHHHHHHHHHhCCcEEEEecCCCHH--HHHHHHHc--C
Confidence 444455565443 45665533222 233 22 134445555666789999999987632 22333332 3
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..-++..-..-|+..++.. .+.|+.+++..++||+|.-||-+|.|+.++.+.|+|||.|.||+.+.
T Consensus 147 c~avMPlgsPIGSg~Gl~n--~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA~a 212 (251)
T d1xm3a_ 147 VHAIMPGASPIGSGQGILN--PLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGA 212 (251)
T ss_dssp CSCBEECSSSTTCCCCCSC--HHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred ChhHHHhhhhhhcCCCcCC--hHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEechhhhcC
Confidence 3233332223444445543 35688888888999999999999999999999999999999999873
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=98.20 E-value=5.2e-05 Score=68.69 Aligned_cols=203 Identities=15% Similarity=0.143 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHcCCccEEE-EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 49 GLAETFTRLKKQGKVALIP-YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~-yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
++.+.++.....+++.+++ ++....| .+++.|..+|.|+|-|+...+- .+.+++
T Consensus 26 ~~r~~l~~~~~~~~~~~~G~~~~~~s~------~~~e~~a~~g~D~v~iD~EHg~-------------------~~~~~~ 80 (299)
T d1izca_ 26 NLRQALKDAMADPSKTLMGVAHGIPST------FVTKVLAATKPDFVWIDVEHGM-------------------FNRLEL 80 (299)
T ss_dssp CHHHHHHHHHHCGGGCEEEEEECSCCH------HHHHHHHHTCCSEEEEETTTSC-------------------CCHHHH
T ss_pred hHHHHHHHHhhccCCceeeeeccCCCH------HHHHHHHcCCCCEEEEcCCCCC-------------------CCHHHH
Confidence 3777776655554455555 5555555 7888999999999999865531 445555
Q ss_pred HHHHHHhhc--cCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHH-----HcC-------
Q 021527 128 LSMLKEVVP--QMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAM-----KNK------- 192 (311)
Q Consensus 128 ~~~i~~ir~--~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~-----~~g------- 192 (311)
.+++..++. ...++.++-.-.| -...++.+.++|++||++|.+- .||++++++.++ ..|
T Consensus 81 ~~~i~a~~~~~~~~~~~iVRvp~~------~~~~I~~~LD~Ga~GIivP~V~s~eea~~~v~~~rypP~G~Rg~~~~~~~ 154 (299)
T d1izca_ 81 HDAIHAAQHHSEGRSLVIVRVPKH------DEVSLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFS 154 (299)
T ss_dssp HHHHHHHHHHTTTCSEEEEECCTT------CHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHHSCTTTCCCCCCSTTCB
T ss_pred HHHHHHHHHhCCCCCCeEEeCCCC------ChHHHHHHHHhCcCeeeccccccHHHHHHHHHhhhhccCCCccccccccc
Confidence 566666653 2344455544332 1346888999999999999764 355666666652 001
Q ss_pred --C------------------CeEEEeCCCChH--HHHHHHHHh-CCceEEEEe-----cCCcc--CCCCC-CCchHHHH
Q 021527 193 --I------------------ELVLFTTPTTPT--DRMKAIVEA-SEGFVYLVS-----SIGVT--GARAS-ISGHVQTL 241 (311)
Q Consensus 193 --i------------------~~I~lisp~t~~--eri~~i~~~-a~gfiY~vs-----~~G~T--G~~~~-~~~~~~~~ 241 (311)
+ +..+++.-.|.+ +.+++|++. .-.++|+.+ ..|.. +...+ .++.+.+.
T Consensus 155 ~g~~~~~~~~~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GVD~ifiGp~DLs~slG~~~~~~~g~~~~p~v~~a 234 (299)
T d1izca_ 155 PGIADASLFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEA 234 (299)
T ss_dssp TTTBCCCSSTTCTTCHHHHHHHCEEEEEECSHHHHHTHHHHHTCTTCCCEEECHHHHHHHTTCCTTCCTTSCCCHHHHHH
T ss_pred cccccccccccchhHHhhhcccceeeeecCCHHHHHHHHHHhccccccEEEEcchHHHhhcCCCcccccccccHHHHHHH
Confidence 1 111222224433 667777653 224566642 33432 11112 24566666
Q ss_pred HHHHhhc---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 242 LREIKES---STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 242 l~~vk~~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++++.+. .++|+ |.+..+++++++..+.|++-+++|+=..-
T Consensus 235 i~~i~~a~k~~Gk~~--g~~~~~~~~~~~~~~~G~~~i~~g~D~~~ 278 (299)
T d1izca_ 235 MTKFSTAAQRNGVPI--FGGALSVDMVPSLIEQGYRAIAVQFDVWG 278 (299)
T ss_dssp HHHHHHHHHHTTCCE--EEECSSGGGHHHHHHTTEEEEEEEEHHHH
T ss_pred HHHHHHHHHHcCCcE--EeccCCHHHHHHHHHcCCCEEEEhHHHHH
Confidence 6665443 36775 44455789999999999999999975543
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=98.14 E-value=3.2e-05 Score=70.95 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHH-----HHHHHcCCCHHH----HHHHHHHhhccCCCcEEEEec
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAA-----TRSLARGTNFNA----ILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~-----~~Al~~G~~~~~----~~~~i~~ir~~~~iPiilm~Y 147 (311)
+.+.+.++.+.++|.|+|||= -+.|-.+++-. .|--+.|-++++ .+++++.||+...-|+++-.-
T Consensus 143 ~~f~~AA~ra~~AGfDGVEiH------~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~ 216 (337)
T d1z41a1 143 QEFKQAAARAKEAGFDVIEIH------AAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVS 216 (337)
T ss_dssp HHHHHHHHHHHHTTCSEEEEE------ECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEee------ccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEec
Confidence 468888999999999999993 12233333221 111223434443 466777888877778766321
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCc
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~ 227 (311)
.+.... .....++..++.+.+.+.|++.+-+..-...
T Consensus 217 ~~~~~~--------------------~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~----------------------- 253 (337)
T d1z41a1 217 ASDYTD--------------------KGLDIADHIGFAKWMKEQGVDLIDCSSGALV----------------------- 253 (337)
T ss_dssp CCCCST--------------------TSCCHHHHHHHHHHHHHTTCCEEEEECCCSS-----------------------
T ss_pred cccccc--------------------CccchhhhHHHHHHHHHcCCccccccccccc-----------------------
Confidence 111111 1123466667777777778776655432210
Q ss_pred cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 228 TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.......+....++.+++|+.+++||++.+||+++++++++++.| ||.|-+|=+++.
T Consensus 254 ~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 311 (337)
T d1z41a1 254 HADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLR 311 (337)
T ss_dssp CCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred ccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHh
Confidence 000000111234677889999999999999999999999999988 999999987764
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.04 E-value=0.00023 Score=65.22 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=101.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcC--C----------------CC------CCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGV--P----------------YS------DPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~--P----------------fs------DP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
+-+.+...+.++...++|+..+.+-+ | .. +.+................+.++
T Consensus 131 ~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 206 (349)
T d1tb3a1 131 KSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCW---- 206 (349)
T ss_dssp CSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCH----
T ss_pred ccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccccCCCCCH----
Confidence 44556778888889999998887631 1 10 00111111110011111233444
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHH
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRM 208 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri 208 (311)
+.++.+|+..+.|+++-+-.+ .+....+.+.|+|++++..-.- ..++ -.
T Consensus 207 ~~i~~l~~~~~~pii~Kgi~~-------~~da~~a~~~G~d~i~vsnhgg------------r~~d----~~-------- 255 (349)
T d1tb3a1 207 NDLSLLQSITRLPIILKGILT-------KEDAELAMKHNVQGIVVSNHGG------------RQLD----EV-------- 255 (349)
T ss_dssp HHHHHHHTTCCSCEEEEEECS-------HHHHHHHHHTTCSEEEECCGGG------------TSSC----SB--------
T ss_pred HHHHHHHHhcCCCcccchhhh-------hHHHHHHHHhhccceeeecccc------------cccc----cc--------
Confidence 467777877888888876432 3556777888888887763210 0011 00
Q ss_pred HHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 209 KAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 209 ~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+ ...+.+.++++. .++||++.+||++..||.+.+-.|||.|-||-.+...+
T Consensus 256 --------------------------~-~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~l 308 (349)
T d1tb3a1 256 --------------------------S-ASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGL 308 (349)
T ss_dssp --------------------------C-CHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHHH
T ss_pred --------------------------c-cchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHHH
Confidence 1 112234444443 35899999999999999999999999999999999876
Q ss_pred hhcCCchhH-HHHHHHHHHHHHhh
Q 021527 287 GEAQSPEEG-LKELEKFAKSLKSA 309 (311)
Q Consensus 287 ~~~~~~~~~-~~~~~~~~~~l~~~ 309 (311)
... .+++ .+.++.+..+|+.+
T Consensus 309 a~~--G~~gv~~~l~~l~~EL~~~ 330 (349)
T d1tb3a1 309 ACK--GEDGVKEVLDILTAELHRC 330 (349)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHH
T ss_pred Hhc--cHHHHHHHHHHHHHHHHHH
Confidence 432 1233 33455566666643
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=97.96 E-value=0.0001 Score=66.70 Aligned_cols=152 Identities=19% Similarity=0.288 Sum_probs=98.3
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcC------CCHHHHHHHHH
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARG------TNFNAILSMLK 132 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G------~~~~~~~~~i~ 132 (311)
....+++=|.-.+| +.+.+.++.+. .|+|.|.| |=|- . ++.+.| .+.+.+.++++
T Consensus 53 ~e~p~~~Ql~g~~p--~~~~~aa~~~~-~~~~~IdlN~GCP~------~--------~v~~~g~Ga~Ll~~p~~~~~iv~ 115 (305)
T d1vhna_ 53 HERNVAVQIFGSEP--NELSEAARILS-EKYKWIDLNAGCPV------R--------KVVKEGAGGALLKDLRHFRYIVR 115 (305)
T ss_dssp TCTTEEEEEECSCH--HHHHHHHHHHT-TTCSEEEEEECCCC------H--------HHHHTTCGGGGGSCHHHHHHHHH
T ss_pred CCCCeEEEEeccch--hhhhhhhhhhh-hheeeeeEEEEecc------h--------hhcccccceeeccCHHHHHHHhh
Confidence 34568888877777 67788887665 59999998 5444 1 122222 36778888999
Q ss_pred HhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
.+++.+++||-+-.-... ......+|++.+.++|++.++++ +.|..+
T Consensus 116 ~~~~~~~~pvsvK~RlG~-d~~~~~~~~~~l~~~G~~~itvH--------------------------~Rt~~q------ 162 (305)
T d1vhna_ 116 ELRKSVSGKFSVKTRLGW-EKNEVEEIYRILVEEGVDEVFIH--------------------------TRTVVQ------ 162 (305)
T ss_dssp HHHHHCSSEEEEEEESCS-SSCCHHHHHHHHHHTTCCEEEEE--------------------------SSCTTT------
T ss_pred hhhhhcccccccccccCc-ccchhhHHHHHHHHhCCcEEEec--------------------------hhhhhh------
Confidence 999999999887642110 01123455666666666666554 222111
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhh
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMV 283 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv 283 (311)
+.+|. .+. +.++++++ ++||++.+||.+.+++.++++ .|+|||-||-+..
T Consensus 163 -------------~~~~~---a~~---~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal 213 (305)
T d1vhna_ 163 -------------SFTGR---AEW---KALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAI 213 (305)
T ss_dssp -------------TTSSC---CCG---GGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGT
T ss_pred -------------ccccc---hhh---hHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEehhHHHH
Confidence 11221 111 33555555 699999999999999999986 5999999996644
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=97.84 E-value=0.00076 Score=59.96 Aligned_cols=214 Identities=13% Similarity=0.168 Sum_probs=123.4
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAILS 129 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~~~ 129 (311)
..|+++.++++..++| .+=|+ --++.++++|.+.+-++ |--+.. + ..+ . .-.++++.++
T Consensus 6 ~~lr~l~~~~~~~~~p--~~~Da------~SAr~~e~aGf~a~~~s---------s~~~aa-s-~G~pD~~~lt~~e~~~ 66 (275)
T d1s2wa_ 6 TQLKQMLNSKDLEFIM--EAHNG------LSARIVQEAGFKGIWGS---------GLSVSA-Q-LGVRDSNEASWTQVVE 66 (275)
T ss_dssp HHHHHHHHSSSCEEEE--EECSH------HHHHHHHHHTCSCEEEC---------CHHHHH-T-C---------CHHHHH
T ss_pred HHHHHHHhCCCCEEee--cCcCH------HHHHHHHHcCCCEEEhh---------HHHHHH-H-cCCCCCCccchhhHHH
Confidence 4566666666544433 22233 34556677899999986 433321 1 111 1 2267889999
Q ss_pred HHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC-----------------Chhh-HHHHHHHH
Q 021527 130 MLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV-----------------PLEE-TESLQKEA 188 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl-----------------p~ee-~~~~~~~~ 188 (311)
.++.|...+++||++. ||-|+. .+.+.++.+.++|+.|+.+=|- +.+| ...++...
T Consensus 67 ~~~~I~~~~~lPv~~D~d~GyG~~~---~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~ 143 (275)
T d1s2wa_ 67 VLEFMSDASDVPILLDADTGYGNFN---NARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACK 143 (275)
T ss_dssp HHHHHHHTCSSCEEEECCSSCSSHH---HHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHH
T ss_pred HHHhhhcccCCceeEecccccccch---HHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhh
Confidence 9999999999999998 576643 3467888999999999999762 1233 23344444
Q ss_pred HH-cCCCeEEEe-CCC-----Ch---HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhh--cCCCcEEEe
Q 021527 189 MK-NKIELVLFT-TPT-----TP---TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKE--SSTKPVAVG 256 (311)
Q Consensus 189 ~~-~gi~~I~li-sp~-----t~---~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~--~~~~Pv~vG 256 (311)
.. .+-+.++.. +.. .- .+|.+.+.+..-..+|+.+ .+ . .++ .+..+.. ..+.|+.+.
T Consensus 144 ~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~~~---~~----~-~~~---~~~~~~~~~~~~~pl~~~ 212 (275)
T d1s2wa_ 144 DSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHS---KK----A-DPS---DIEAFMKAWNNQGPVVIV 212 (275)
T ss_dssp HHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECC---CS----S-SSH---HHHHHHHHHTTCSCEEEC
T ss_pred hhccCcceeEEecchhhhhcCCHHHHHHHHHHHHhcCCCeeeecc---cc----C-cHH---HHHHHHHhhcCCCCEEEe
Confidence 33 233444332 111 11 2677777766666667532 11 1 122 2222222 246787775
Q ss_pred eCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHH
Q 021527 257 FGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLK 307 (311)
Q Consensus 257 fGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~ 307 (311)
-+-...-.+.++.++|..-++.|..+.+.- ...+++.+++|+
T Consensus 213 ~~~~~~~~~~eL~~lGv~~v~~g~~~~~aa---------~~a~~~~~~~l~ 254 (275)
T d1s2wa_ 213 PTKYYKTPTDHFRDMGVSMVIWANHNLRAS---------VSAIQQTTKQIY 254 (275)
T ss_dssp CSTTTTSCHHHHHHHTCCEEEECSHHHHHH---------HHHHHHHHHHHH
T ss_pred cccccccHHHHHHHcCCCEEEEchHHHHHH---------HHHHHHHHHHHH
Confidence 322111125678889999999999888743 345566666654
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=8.2e-05 Score=67.96 Aligned_cols=161 Identities=16% Similarity=0.196 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHH-----HHHHHcCCCHH----HHHHHHHHhhccCC--CcEEEEe
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAA-----TRSLARGTNFN----AILSMLKEVVPQMS--CPIALFT 146 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~-----~~Al~~G~~~~----~~~~~i~~ir~~~~--iPiilm~ 146 (311)
.+.+.++.+.++|.|+|||= -+.|-.+.+-. .|--+.|-+++ =.+++++.||+.+. .||.+-.
T Consensus 142 ~f~~aA~ra~~AGfDgVEIh------~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~ 215 (330)
T d1ps9a1 142 NFARCAQLAREAGYDGVEVM------GSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRL 215 (330)
T ss_dssp HHHHHHHHHHHTTCSEEEEE------ECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred HHHHHHHHHHHhCcCeeeec------cchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecc
Confidence 57888999999999999992 11222222211 11112233333 34667777887654 4555422
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
-...... ....+++..++.+.+.+.|++.+....-... .+
T Consensus 216 s~~d~~~--------------------~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~-~~------------------- 255 (330)
T d1ps9a1 216 SMLDLVE--------------------DGGTFAETVELAQAIEAAGATIINTGIGWHE-AR------------------- 255 (330)
T ss_dssp EEECCST--------------------TCCCHHHHHHHHHHHHHHTCSEEEEEECBTT-CS-------------------
T ss_pred ccccccc--------------------CCCCHHHHHHHHHHHHHhhhhhhhccccccc-cc-------------------
Confidence 1110000 1124566777777777777776543321110 00
Q ss_pred ccCCCCCCC-chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 227 VTGARASIS-GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~-~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
........+ .....+.+++|+.+++||++.+||++++++.++++.| ||.|-+|=+++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 315 (330)
T d1ps9a1 256 IPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (330)
T ss_dssp SCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred ccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHh
Confidence 000000111 1234567889999999999999999999999999988 999999988764
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=97.78 E-value=0.00026 Score=64.68 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHcCCCeEEEe-CCCChHHHHHHHHHhCCceEEEEecCC---ccC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKNKIELVLFT-TPTTPTDRMKAIVEASEGFVYLVSSIG---VTG 229 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~gi~~I~li-sp~t~~eri~~i~~~a~gfiY~vs~~G---~TG 229 (311)
.+.++.+.++|+|-+++ |... +...++.+.+++...+....+ +-.| .+-.+.+.+..-..+-+.-..| +|.
T Consensus 100 ~e~~~~li~agvd~ivI-d~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t-~~~a~~l~~~GaD~v~VGig~Gs~ctt~ 177 (330)
T d1vrda1 100 MERVEKLVKAGVDVIVI-DTAHGHSRRVIETLEMIKADYPDLPVVAGNVAT-PEGTEALIKAGADAVKVGVGPGSICTTR 177 (330)
T ss_dssp HHHHHHHHHTTCSEEEE-CCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECS-HHHHHHHHHTTCSEEEECSSCSTTCHHH
T ss_pred HHHHHHHHHCCCCEEEE-ecCCCCchhHHHHHHHHHHhCCCCCEEeechhH-HHHHHHHHHcCCCEEeeccccCcccccc
Confidence 46778889999997654 5543 334445555666544433322 2233 3444455554333333311111 121
Q ss_pred CCCCCC-chH--HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 230 ARASIS-GHV--QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 230 ~~~~~~-~~~--~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
..++.. +.+ ...+.++++..++||+..+||.+..++.+.+.+|||+|-+||.|...-|
T Consensus 178 ~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E 238 (330)
T d1vrda1 178 VVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEE 238 (330)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTT
T ss_pred ceeccccccchhHHHHHHHHHhcCceEEecCCcccCCchheeeeccCceeeecchheeecc
Confidence 111221 122 2234455666789999999999999999999999999999999998765
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=0.0011 Score=59.36 Aligned_cols=203 Identities=14% Similarity=0.218 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC------
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG------ 121 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G------ 121 (311)
+.-.++|.++.+++...+ ++|--|. --++..+++|.+.+-++ |--+..+ ..|
T Consensus 2 ~~~~~~lr~ll~~~~~~~----~~~~~D~----~sA~~~e~~Gf~a~~~s---------g~~~sa~-----~~G~pD~~~ 59 (289)
T d1muma_ 2 HSPGKAFRAALTKENPLQ----IVGTINA----NHALLAQRAGYQAIYLS---------GGGVAAG-----SLGLPDLGI 59 (289)
T ss_dssp CCHHHHHHHHHHHCSSEE----EEECSSH----HHHHHHHHTTCSCEEEC---------HHHHHHT-----TSCCCSSSC
T ss_pred CCHHHHHHHHHhCCCCEE----eecCCCH----HHHHHHHHcCCCEEEhh---------HHHHHHH-----ccCCCCCCC
Confidence 334566777766665433 3443332 34467788999999885 4222211 123
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC---------------ChhhH-H
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV---------------PLEET-E 182 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl---------------p~ee~-~ 182 (311)
.++++.++.+++|.+.+++|+++. ||-|... .+.+.++.+.++|+.|+.+=|- +.+|. .
T Consensus 60 ~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~--~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ 137 (289)
T d1muma_ 60 STLDDVLTDIRRITDVCSLPLLVDADIGFGSSAF--NVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVD 137 (289)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHH--HHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHH
T ss_pred CChHHHHHHHHHHhcccCCCeeecccccccccch--HHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHH
Confidence 588999999999999999999998 4665322 2467889999999999999663 33443 3
Q ss_pred HHHHHHHHcCC-CeEEEeCCCCh--------HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcE
Q 021527 183 SLQKEAMKNKI-ELVLFTTPTTP--------TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPV 253 (311)
Q Consensus 183 ~~~~~~~~~gi-~~I~lisp~t~--------~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv 253 (311)
+++..+...+- +.++..-...- .+|.+.+.+..-..+|.. |.+ + .+.++++.+..+.|+
T Consensus 138 ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~---~~~--------~-~~~~~~~~~~~~~Pl 205 (289)
T d1muma_ 138 RIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPE---AIT--------E-LAMYRQFADAVQVPI 205 (289)
T ss_dssp HHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEET---TCC--------C-HHHHHHHHHHHCSCB
T ss_pred HHHHHHHhcCCcchhheeccccccccCHHHHHHHHHHhhhcCCcEEEec---CCC--------C-HHHHHHHHHhcCCCE
Confidence 34444444333 33333211111 266677766555566642 111 1 245777777666776
Q ss_pred EE--eeCCCCHH-HHHHHHHcCCcEEEEhhHhhchh
Q 021527 254 AV--GFGISKPE-HVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 254 ~v--GfGIst~e-~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+ ..|-.+|. +.+++.++|..-++.|....+..
T Consensus 206 ~~~~~~~~~~p~~s~~eL~~~Gv~~v~~~~~~~~aa 241 (289)
T d1muma_ 206 LANITEFGATPLFTTDELRSAHVAMALYPLSAFRAM 241 (289)
T ss_dssp EEECCSSSSSCCCCHHHHHHTTCSEEEESSHHHHHH
T ss_pred EEeecCcCCCccchHHHHHHhccceEEechHHHHHH
Confidence 44 32333332 56788999999999998877643
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=97.68 E-value=0.0016 Score=57.09 Aligned_cols=181 Identities=17% Similarity=0.162 Sum_probs=108.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-CcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iPiilm~Y~n~i~~ 153 (311)
+.++-+++++.|.+.|+|.||+|.|-+-+..+.+. ........+.++.+....+ ..+..|..++
T Consensus 27 s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~-----------~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~---- 91 (289)
T d1nvma2 27 TLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNY-----------GFGRHTDLEYIEAVAGEISHAQIATLLLPG---- 91 (289)
T ss_dssp CHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTT-----------BCCSSCHHHHHHHHHTTCSSSEEEEEECBT----
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchh-----------hhccchHHHHHHHHHHhcchhHHHHHHhhh----
Confidence 45788999999999999999999775433222111 0100111234444444322 2344443332
Q ss_pred cCHHHHHHHHHHcCCcEEEecCC--ChhhHHHHHHHHHHcCCCeEEEeC--CCChHHHHHH----HHHhCCceEEEEecC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDV--PLEETESLQKEAMKNKIELVLFTT--PTTPTDRMKA----IVEASEGFVYLVSSI 225 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDl--p~ee~~~~~~~~~~~gi~~I~lis--p~t~~eri~~----i~~~a~gfiY~vs~~ 225 (311)
....+.+..+.+.|++.+.+-+- ..+...+..+.+++.|++.+..+. ...+.+.+.+ +.+..-..+|+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~DT~ 171 (289)
T d1nvma2 92 IGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSG 171 (289)
T ss_dssp TBCHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTT
T ss_pred hhhHHHHHHHHHhcccceEEEeehhhhhhHhHHHHHHHHhCCceeeEeeeccccCchhhhHHHHhhccccceeeeecchh
Confidence 22345677788899998777432 234567788888999998776543 2233444333 333344567777655
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCC--CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 226 GVTGARASISGHVQTLLREIKESST--KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
| . ..|..+.++++.+|+..+ +|+-+ ..|-. ..++...+++|||-+
T Consensus 172 G---~--~~P~~v~~~v~~l~~~~~~~~~i~~H~Hn~~g~a-~an~l~A~~~G~~~i 222 (289)
T d1nvma2 172 G---A--MSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLG-VANSIVAVEEGCDRV 222 (289)
T ss_dssp C---C--CCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCH-HHHHHHHHHTTCCEE
T ss_pred h---c--ccchhHHHHHHHHHHHhcccccceeeechHHHHH-HHHHHHHHHhCCcEe
Confidence 4 3 346678999999998753 45543 22332 345667788999965
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=97.64 E-value=0.0014 Score=57.70 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=91.1
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-C----------CChhhHHHHHHHHHHcCCCeEEEeCC-CChH
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-D----------VPLEETESLQKEAMKNKIELVLFTTP-TTPT 205 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-D----------lp~ee~~~~~~~~~~~gi~~I~lisp-~t~~ 205 (311)
.+.++..-.+.......+.+...+.....+++++... + -......+......+.+...+.-..+ ..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~k~v~~~~~~ 173 (310)
T d1vcfa1 94 PKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSR 173 (310)
T ss_dssp SSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCH
T ss_pred CCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccchhhhcccccccccHHHHHHHHhhccCCceeeeecCcccH
Confidence 4566666555555555666666666666788876552 1 11112223333334445554433222 2334
Q ss_pred HHHHHHHHhCCceEEEEecCCccCC-------C---------CCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHH
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGA-------R---------ASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQV 268 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~-------~---------~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v 268 (311)
+..+...+..-..+. ++..|.++. + .+......+.+.++++. .++||++.+||++..|+.+.
T Consensus 174 e~a~~~~~aGvd~i~-vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~KA 252 (310)
T d1vcfa1 174 EAALALRDLPLAAVD-VAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKA 252 (310)
T ss_dssp HHHHHHTTSCCSEEE-CCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHHHHcCCCEEE-eccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHHHHHH
Confidence 444444333222332 443333211 0 00101122345555554 37999999999999999999
Q ss_pred HHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 269 AGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 269 ~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+.+|||+|-||+.+...+..+ .+.-.+.++.+.++|+.
T Consensus 253 LalGAdaV~iGr~~l~~~~~G--~~gv~~~l~~l~~El~~ 290 (310)
T d1vcfa1 253 LALGADLLAVARPLLRPALEG--AERVAAWIGDYLEELRT 290 (310)
T ss_dssp HHHTCSEEEECGGGHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred HHhCCCEeeEhHHHHHHhccC--HHHHHHHHHHHHHHHHH
Confidence 999999999999999876532 22222234444555554
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.64 E-value=9e-05 Score=65.07 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
|.+.++.+.+..-..++++...+..+. .....+.++++.+.+++|+.+|+||++.|+++++++.|||=||+||...
T Consensus 32 P~~~a~~~~~~g~dei~ivDld~~~~~----~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~ 107 (253)
T d1thfd_ 32 PVELGKFYSEIGIDELVFLDITASVEK----RKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAV 107 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCSSSH----HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeecccccC----cccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHh
Confidence 556666665544445677765543222 1234578888888899999999999999999999999999999999988
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 108 ~ 108 (253)
T d1thfd_ 108 E 108 (253)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.63 E-value=0.0001 Score=64.67 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
|.+-++.+.+..-..++++...+..+.+ ....++++++.+.+.+|+.+|+||++.|++++++++|||=||+||...
T Consensus 32 P~~~a~~~~~~g~dei~iiDl~~~~~~~----~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~ 107 (251)
T d1ka9f_ 32 PVEAARAYDEAGADELVFLDISATHEER----AILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAV 107 (251)
T ss_dssp HHHHHHHHHHHTCSCEEEEECCSSTTCH----HHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEecccccccc----hhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhh
Confidence 4556666666555567777655543221 234578899988889999999999999999999999999999999877
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 108 ~ 108 (251)
T d1ka9f_ 108 R 108 (251)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=0.0029 Score=55.74 Aligned_cols=174 Identities=14% Similarity=0.131 Sum_probs=111.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
|++...+.++...++|||+|-++... |-.|. .+.....++.++..+++|+.+.++ |
T Consensus 38 d~d~~~~~A~~qv~~GA~iLDIn~~~--~~~~e----------------~~~m~~li~~l~~~~d~PlsIDT~-~----- 93 (260)
T d3bofa1 38 NEEIVIKEAKTQVEKGAEVLDVNFGI--ESQID----------------VRYVEKIVQTLPYVSNVPLSLDIQ-N----- 93 (260)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEECSS--GGGSC----------------HHHHHHHHHHHHHHTCSCEEEECC-C-----
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCC--chhhh----------------HHHHHHHHHHHHhcCCCCccccCC-C-----
Confidence 55889999999999999999997432 22232 223345777777789999999875 2
Q ss_pred CHHHHHHHHHHc--CCcEEEecCCChh--hHHHHHHHHHHcCCCeEEEeC----CCChHHHHHHHHHh-----CCc---e
Q 021527 155 GVDNFMSTVRDI--GIRGLVVPDVPLE--ETESLQKEAMKNKIELVLFTT----PTTPTDRMKAIVEA-----SEG---F 218 (311)
Q Consensus 155 g~~~fi~~~~~a--GadGviipDlp~e--e~~~~~~~~~~~gi~~I~lis----p~t~~eri~~i~~~-----a~g---f 218 (311)
-+-++.+.++ |.+ |+.|...+ +..+..+.+++||...|.+.. |.+.++|.+...+. ..| -
T Consensus 94 --~~v~eaaLk~~~G~~--iINsis~e~~~~~~~~~l~~~yga~vI~l~~d~g~p~~~~er~~~~~~~~~~~~~~g~~e~ 169 (260)
T d3bofa1 94 --VDLTERALRAYPGRS--LFNSAKVDEEELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHDFSDR 169 (260)
T ss_dssp --HHHHHHHHHHCSSCC--EEEEEESCHHHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred --HHHHHHHHHHhcCcc--eEeecccccchHHHHHHHHHhcCCCEEEEecCCcccccHHHHHHHHHHHHHHHHhcCCcHh
Confidence 2455666555 654 45565544 345577899999998887753 66666664322111 112 2
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEe-----eCCCCHHHHHH-----HHHcCCcEEEE
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVG-----FGISKPEHVQQ-----VAGWGADGVIV 278 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG-----fGIst~e~v~~-----v~~~GADGvIV 278 (311)
+++-...+.-|+. +.+-.+.+.++++|+ .+.|+.+| ||.-..+-+.. ...+|.|.+||
T Consensus 170 ii~DPli~~~~t~-~~~~~~l~~i~~i~~-~g~~~~~GlSN~SFGlp~R~~ln~~Fl~~a~~~Gld~aIv 237 (260)
T d3bofa1 170 VIFDPGVLPLGAE-GKPVEVLKTIEFISS-KGFNTTVGLSNLSFGLPDRSYYNTAFLVLGISKGLSSAIM 237 (260)
T ss_dssp EEEECCCCCGGGT-CCHHHHHHHHHHHHH-TTCCBCCBGGGGGTTCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred heecccceeccch-HHHHHHHHHHHHHHh-cCcceeeccccccCCCcchHHHHHHHHHHHHHcCCCcccC
Confidence 5665555533332 223345666777776 48898886 78876555433 34778887776
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.51 E-value=8.8e-05 Score=64.50 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+..+.+.+..-..+|++...+..+. ..+ .++++++.+.+.+|+.+|+||++.++++++++.|||-|++||..
T Consensus 32 dP~~~a~~~~~~ga~~l~i~DLd~~~~~--~~~---~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~ 106 (239)
T d1vzwa1 32 SPLEAALAWQRSGAEWLHLVDLDAAFGT--GDN---RALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAA 106 (239)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTS--CCC---HHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEeecccccc--cch---HHHHHHHHhhcCcceEeecccccchhhhhhhccccccchhhHHh
Confidence 4566666666665667888876654442 112 36788888888999999999999999999999999999999987
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 107 ~~ 108 (239)
T d1vzwa1 107 LE 108 (239)
T ss_dssp HH
T ss_pred hh
Confidence 76
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=97.47 E-value=0.0008 Score=62.11 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=90.4
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+++||+- .-+.++ +..++...+.+.|.=|+|---.++|+..+.....+.........+......+|.+.+.+....
T Consensus 49 l~iPIIs-AnMDTV---t~~~mA~~la~~GglgvihR~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d 124 (362)
T d1pvna1 49 LKIPLVS-AIMQSV---SGEKMAIALAREGGISFIFGSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGAD 124 (362)
T ss_dssp ESSSEEE-CSCTTT---CSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCS
T ss_pred cCCcEEe-cCCCCc---CCHHHHHHHHHCCCEEEEeecCCHHHHHHHhhhhhhcccccccccchhhhHHHHHHHhhcCce
Confidence 4678665 222233 346788889999988887666778887777777777666555555666666787777665555
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
++.+-...| ....+.+.++.+|+.. +.||++| .|-|+|.++.+.++|||+|-||
T Consensus 125 ~i~IDvAhG-------~~~~v~~~i~~ir~~~~~~~~IiAG-NVaT~e~~~~L~~aGaD~vkVG 180 (362)
T d1pvna1 125 VLCIDSSDG-------FSEWQKITIGWIREKYGDKVKVGAG-NIVDGEGFRYLADAGADFIKIG 180 (362)
T ss_dssp EEEECCSCC-------CBHHHHHHHHHHHHHHGGGSCEEEE-EECSHHHHHHHHHHTCSEEEEC
T ss_pred EEeechhcc-------chhHHHHHHHHHHHhhccceeeecc-cccCHHHHHHHHHhCCcEEEec
Confidence 554433332 2334567888886643 4788655 8999999999999999999999
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.46 E-value=0.00094 Score=60.78 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=41.4
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.++.+.+|+.+++||++.+||++++++.++++.| ||.|-+|-.++.
T Consensus 280 ~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~ia 326 (340)
T d1djqa1 280 IPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA 326 (340)
T ss_dssp HHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHH
T ss_pred HHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHH
Confidence 4578889999999999999999999999999988 999999988864
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=97.45 E-value=0.00022 Score=65.13 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCH-----------HHHHHHHHcCC
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP-----------EHVQQVAGWGA 273 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~-----------e~v~~v~~~GA 273 (311)
.+.++...+..-..+-++...+..+... ......+.|+++.+.+.+|+.+|+||++- |+++++++.||
T Consensus 51 ~~~a~~~~~~gaDeL~ivDidas~~~~~-~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~Ga 129 (323)
T d1jvna1 51 VQLAQKYYQQGADEVTFLNITSFRDCPL-KDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGA 129 (323)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCG-GGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCEEEEEECcCCCCCcC-CCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHHcCC
Confidence 4555555554333344444333222211 12345688999988899999999999994 56789999999
Q ss_pred cEEEEhhHhhc
Q 021527 274 DGVIVGSAMVK 284 (311)
Q Consensus 274 DGvIVGSaiv~ 284 (311)
|=|+|||+.++
T Consensus 130 dKVvI~T~ai~ 140 (323)
T d1jvna1 130 DKVSIGTDAVY 140 (323)
T ss_dssp SEEEECHHHHH
T ss_pred CeEEechHHhh
Confidence 99999999875
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.45 E-value=0.00016 Score=62.94 Aligned_cols=46 Identities=35% Similarity=0.453 Sum_probs=40.2
Q ss_pred HHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 240 TLLREIKES--STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 240 ~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+++.++.+. .++|+++..||.||.|+..+.++|+|||.|||+|.+.
T Consensus 177 ~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s 224 (254)
T d1znna1 177 EVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKS 224 (254)
T ss_dssp HHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGS
T ss_pred HHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcC
Confidence 456666553 5789999999999999999999999999999999984
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.0012 Score=60.18 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=86.1
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE--EEeCCCChHHHHHHHHHhC
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV--LFTTPTTPTDRMKAIVEAS 215 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I--~lisp~t~~eri~~i~~~a 215 (311)
+++||+-- -+..+ +..++...+.++|--|++--...+++..+..+..++.....- +-++|. ..+|++.+.+..
T Consensus 36 ~~iPIIaa-~MdtV---~~~~mA~als~~GGlGvi~r~~~~e~~~~~i~~vk~~~~~v~~~vgv~~~-~~e~~~~li~ag 110 (330)
T d1vrda1 36 INIPLVSA-AMDTV---TEAALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTRLLVGAAVGTSPE-TMERVEKLVKAG 110 (330)
T ss_dssp ESSSEEEC-CCTTT---CSHHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHTCCBCCEEEECSSTT-HHHHHHHHHHTT
T ss_pred cCCCEEeC-CCCCc---CCHHHHHHHHHCCCeEEeecccchhhhHHHHHHHhhhccEEEEEEecCHH-HHHHHHHHHHCC
Confidence 46787662 12222 336788889999999987666777877777777776654222 223554 457887776643
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
-.++.+-... +.+..+.+.++.+|+.. ++||++ +.+.|++.++.+.++|||+|.||
T Consensus 111 vd~ivId~A~-------G~~~~~~~~ik~ik~~~~~~~via-GnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 111 VDVIVIDTAH-------GHSRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp CSEEEECCSC-------CSSHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEecCC-------CCchhHHHHHHHHHHhCCCCCEEe-echhHHHHHHHHHHcCCCEEeec
Confidence 3333222211 23445667888888864 788855 56667999999999999999996
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=97.44 E-value=0.0013 Score=56.75 Aligned_cols=192 Identities=16% Similarity=0.198 Sum_probs=106.4
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+-...++.+..+++++.+. ..++++++|.|+ + +..| .+.++++++ .+.||++..=+
T Consensus 8 vALD~~~~~~al~i~~~~~-~~i~~iKvG~~l---------~-------~~~G------~~~i~~l~~-~~~~IflD~K~ 63 (237)
T d1dbta_ 8 IALDFASAEETLAFLAPFQ-QEPLFVKVGMEL---------F-------YQEG------PSIVKQLKE-RNCELFLDLKL 63 (237)
T ss_dssp EECCCSSHHHHHHHTGGGT-TSCCEEEECHHH---------H-------HHHT------HHHHHHHHH-TTCEEEEEEEE
T ss_pred EEeccCCHHHHHHHHHHcC-CcccEEEECHHH---------H-------hhcC------HHHHHHHHh-cchheehhhhh
Confidence 5678899999999999975 569999999666 1 1122 456777775 45777776544
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHc------CCCeEEEeCCCChHHH--------------
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKN------KIELVLFTTPTTPTDR-------------- 207 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~------gi~~I~lisp~t~~er-------------- 207 (311)
.++-.+ ....+..+.+.|+|.+.++-..-.+ .....+.+++. ....+..+..++..+.
T Consensus 64 ~DIgnT-v~~~~~~~~~~~~d~vtvh~~~G~~~i~aa~~~~~~~~~~~~~~~~l~~v~~lts~~~~~~~~~~~~~~~~~~ 142 (237)
T d1dbta_ 64 HDIPTT-VNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLID 142 (237)
T ss_dssp CSCHHH-HHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBCSCHHH
T ss_pred ccCchH-HHHHHHhhhccccceEEeecccchHHHHHHHHhhhhcchhccccceeEEEecccccchHHHHhhhhhhcccch
Confidence 333222 2345566777899999997544333 22333333432 1222332222222111
Q ss_pred -HHHHHH--hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHH----------HHHHHHHcCC
Q 021527 208 -MKAIVE--ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPE----------HVQQVAGWGA 273 (311)
Q Consensus 208 -i~~i~~--~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e----------~v~~v~~~GA 273 (311)
...... ...|+...+. ++ ..+..+|+.. +-.+++--||+-.. +..++.+.||
T Consensus 143 ~v~~~~~~~~~~g~~g~v~-----------s~---~~~~~~r~~~~~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~Ga 208 (237)
T d1dbta_ 143 TVVHYSKQAEESGLDGVVC-----------SV---HEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGS 208 (237)
T ss_dssp HHHHHHHHHHHTTCSEEEC-----------CG---GGHHHHTTTSCTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTC
T ss_pred hhHHHHHhhhhcCcceeec-----------ch---hhhhhhccccccceeEeccccccCCCCCCCceeeCCHHHHHHcCC
Confidence 111111 1223333321 11 2366666654 44556666653211 1456777999
Q ss_pred cEEEEhhHhhchhhhcCCchhHHHHHHHHHHHH
Q 021527 274 DGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 306 (311)
Q Consensus 274 DGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l 306 (311)
|-+|||.+|++. .+|. +.++++.+++
T Consensus 209 D~iIVGR~I~~s----~dP~---~aa~~i~~~i 234 (237)
T d1dbta_ 209 SAIVVGRSITKA----EDPV---KAYKAVRLEW 234 (237)
T ss_dssp SEEEECHHHHTS----SCHH---HHHHHHHHHH
T ss_pred CEEEECCcccCC----CCHH---HHHHHHHHHH
Confidence 999999999973 3344 3445554554
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.44 E-value=0.0016 Score=60.46 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=75.1
Q ss_pred HHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC----
Q 021527 159 FMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR---- 231 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~---- 231 (311)
.++.+.++|+|-+++ |.+. +...+..+.+++...+....+....+.+-...+.+..-..|-+. .-+..+..
T Consensus 123 ~~~~l~~agv~vi~i-d~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVG-iG~Gs~ctTr~~ 200 (378)
T d1jr1a1 123 RLDLLALAGVDVVVL-DSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVG-MGCGSICITQEV 200 (378)
T ss_dssp HHHHHHHHTCCEEEE-CCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEEC-SSCSTTBCHHHH
T ss_pred HHHHHHhhccceEee-eccCccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeec-cccccccccccc
Confidence 456778899998654 4332 33445556666655444433322223344444444433333221 11111111
Q ss_pred CCC-CchH--HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 232 ASI-SGHV--QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 232 ~~~-~~~~--~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+++ -|.+ ...+.+++...++||+..+||.+.-++.+.+.+|||+|.+||.|...-+
T Consensus 201 tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~E 259 (378)
T d1jr1a1 201 LACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTE 259 (378)
T ss_dssp HCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred cccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeeecceeeeeec
Confidence 111 1122 2234455556689999999999999999999999999999999997654
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=97.43 E-value=0.00078 Score=62.76 Aligned_cols=130 Identities=16% Similarity=0.256 Sum_probs=82.6
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE--------------------
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL-------------------- 197 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~-------------------- 197 (311)
+++||+- .-++.+ .-.++...+.+.|-=|+|--.+++|+..+..+..+.+....+.
T Consensus 39 l~iPIis-A~MDtV---t~~~mAi~ma~~GGlgVihr~~~ie~q~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~ 114 (388)
T d1eepa_ 39 LNIPFLS-SAMDTV---TESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHL 114 (388)
T ss_dssp ESSSEEE-CCCTTT---CSHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHHTCC-------------------------
T ss_pred cCCCEEe-cCCCCC---CCHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhhhccccccccccCccccccchhhhhhhhh
Confidence 5788665 222333 2256888888889999887788888766555444433221110
Q ss_pred -------------------------------EeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHh
Q 021527 198 -------------------------------FTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 198 -------------------------------lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk 246 (311)
...+....+|.+.+.+..-.++.+-+.. | -...+.++++.+|
T Consensus 115 ~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~~aG~D~ivID~Ah---G----~s~~~~~~i~~ik 187 (388)
T d1eepa_ 115 EKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAH---G----HSTRIIELIKKIK 187 (388)
T ss_dssp -------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHHHTTCSEEEECCSC---C----SSHHHHHHHHHHH
T ss_pred hhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCCHHHHHHHHHHHhhccceeeeeccc---c----chHHHHHHHHHHH
Confidence 0112233578777766444443332222 2 2345678899998
Q ss_pred hcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 247 ESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 247 ~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+.. ++|| +.++|.|+|.+..+.++|||+|.||
T Consensus 188 ~~~~~v~v-IaGNV~T~e~a~~L~~~GaD~VkVG 220 (388)
T d1eepa_ 188 TKYPNLDL-IAGNIVTKEAALDLISVGADCLKVG 220 (388)
T ss_dssp HHCTTCEE-EEEEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHCCCCce-eeccccCHHHHHHHHhcCCCeeeec
Confidence 764 7888 5667778999999999999999998
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.41 E-value=0.00068 Score=62.71 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=85.9
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcC-CCeEEE-e-CCCChHHHHHHHHHh
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK-IELVLF-T-TPTTPTDRMKAIVEA 214 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~g-i~~I~l-i-sp~t~~eri~~i~~~ 214 (311)
+++||+-- -++. -+..++...+.+.|.=|+|--..+++|..+.....++.. -..+.. + .+....+|++.+.+.
T Consensus 43 ~~iPIIsA-~MDt---V~~~~mA~~ls~~Gglgvlhr~~~~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~a 118 (365)
T d1zfja1 43 LNIPIITA-AMDT---VTGSKMAIAIARAGGLGVIHKNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEA 118 (365)
T ss_dssp ESSSEEEC-CCTT---TCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHH
T ss_pred cCCCEEEC-CCCC---cCCHHHHHHHHHCCCceEEcCccCHHHHHHHhhhhhhccCceEEEEEeccCchHHHHHHHHHHc
Confidence 56786652 2222 234678888999999998776777887665555444432 222221 1 122335888887776
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.-.++.+-+.. +-...+.+.++++|+.. ++|| +.++|-|+|.+..+.++|||+|.||
T Consensus 119 gvd~ivID~A~-------G~s~~~~~~i~~ik~~~~~~~i-IaGNV~T~e~a~~L~~aGaD~VkVG 176 (365)
T d1zfja1 119 GADAIVIDTAH-------GHSAGVLRKIAEIRAHFPNRTL-IAGNIATAEGARALYDAGVDVVKVG 176 (365)
T ss_dssp TCSEEEECCSC-------TTCHHHHHHHHHHHHHCSSSCE-EEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCc-------ccccchhHHHHHHHhhCCCcce-eecccccHHHHHHHHhcCCceEEee
Confidence 55554332222 23445677899998875 6787 5678999999999999999999998
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.39 E-value=0.00027 Score=61.99 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
|.+.++.+.+..-..++++...+.... .....+.++++.+.+++|+.+|+||++.|++++++..|||=|++||...
T Consensus 34 P~~~a~~~~~~gadei~ivDl~~~~~~----~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~ 109 (252)
T d1h5ya_ 34 PVEMAVRYEEEGADEIAILDITAAPEG----RATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAV 109 (252)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCTTT----HHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEeccccccc----cccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEeccccc
Confidence 455566665544456777765553221 1223467888888889999999999999999999999999999999877
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 110 ~ 110 (252)
T d1h5ya_ 110 R 110 (252)
T ss_dssp H
T ss_pred C
Confidence 6
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.0093 Score=53.01 Aligned_cols=204 Identities=18% Similarity=0.208 Sum_probs=130.6
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM 130 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~ 130 (311)
++.++..++.| -++-.|= -.+++...-++++.++..+.+| |+ ...|- +. -...+.+..+
T Consensus 6 k~ll~~A~~~~-yAV~AfN---v~~~e~~~avi~AAe~~~sPvI-lq------~~~~~-~~---------~~~~~~~~~~ 64 (284)
T d1gvfa_ 6 KYLLQDAQANG-YAVPAFN---IHNAETIQAILEVCSEMRSPVI-LA------GTPGT-FK---------HIALEEIYAL 64 (284)
T ss_dssp HHHHHHHHHHT-CCEEEEE---CCSHHHHHHHHHHHHHHTCCCE-EE------ECTTH-HH---------HSCHHHHHHH
T ss_pred HHHHHHHHHCC-cEEEEEE---ECCHHHHHHHHHHHHHHCCCEE-EE------cCHhH-Hh---------hCCHHHHHHH
Confidence 45555555443 3444444 3456888888888888888765 22 11221 11 0235566778
Q ss_pred HHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE---Ee--
Q 021527 131 LKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL---FT-- 199 (311)
Q Consensus 131 i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~---li-- 199 (311)
++.+.++.++||.+.. -+....+.++++.++|.+.|.+ ..+|+|| ..++.+.++++|+.+=- .+
T Consensus 65 ~~~~a~~~~vpV~lHl-----DH~~~~e~i~~ai~~GftSVMiD~S~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g 139 (284)
T d1gvfa_ 65 CSAYSTTYNMPLALHL-----DHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGG 139 (284)
T ss_dssp HHHHHHHTTSCBEEEE-----EEECCHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-
T ss_pred HHHHHHhcCCeEEeee-----ccccchHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHHHhhccceeeeeeeecc
Confidence 8888888999988853 1233356888999999999988 4688887 56788888888763211 00
Q ss_pred ------------CCCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCC
Q 021527 200 ------------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISK 261 (311)
Q Consensus 200 ------------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst 261 (311)
..|+| +..++..+. .|...+ + +..|.+- +.+.-..+.|+++++.+++|++. |.|+.
T Consensus 140 ~ed~~~~~~~~~~~T~p-eea~~Fv~~-TgvD~LAvaiGt~HG~y~---~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~- 213 (284)
T d1gvfa_ 140 VEDDMSVDAESAFLTDP-QEAKRFVEL-TGVDSLAVAIGTAHGLYS---KTPKIDFQRLAEIREVVDVPLVLHGASDVP- 213 (284)
T ss_dssp ----------CCSSCCH-HHHHHHHHH-HCCSEEEECSSCCSSCCS---SCCCCCHHHHHHHHHHCCSCEEECCCTTCC-
T ss_pred ccccccccccccccCCH-HHHHHHHHH-hCCCEEeeecCceeeccC---CCCccccchhhhhhccccCCeEeeCCCCCC-
Confidence 12344 444455443 233333 3 3333322 22222246789999999999866 77785
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|++++..+.|.-=+=|||.+....
T Consensus 214 ~e~i~~ai~~Gi~KiNi~T~l~~a~ 238 (284)
T d1gvfa_ 214 DEFVRRTIELGVTKVNVATELKIAF 238 (284)
T ss_dssp HHHHHHHHHTTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHcCeEEEEechHHHHHH
Confidence 7999999999999999999886543
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=97.39 E-value=0.0098 Score=52.04 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=103.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
|.+...+.++.+.+.|||+|-+|... +.++. .+.....+..+++..++|+-+-+|.
T Consensus 23 d~~~~~~~A~~m~~~GAdiIDIg~g~-------~~~~e-----------~e~~~~vi~~l~~~~~vpiSIDT~~------ 78 (262)
T d1f6ya_ 23 DPAPVQEWARRQEEGGARALDLNVGP-------AVQDK-----------VSAMEWLVEVTQEVSNLTLCLDSTN------ 78 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBCC-----------CH-----------HHHHHHHHHHHHTTCCSEEEEECSC------
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCCCC-------CCCCH-----------HHHHHHHHHHHHHhhcCCccccCCc------
Confidence 55888999999999999999998321 11111 1122345555666789999998873
Q ss_pred CHHHHHHHHHH--cCCcEEEecCCChh--hHHHHHHHHHHcCCCeEEEeC-----CCChHHHHHH-------HHHh--CC
Q 021527 155 GVDNFMSTVRD--IGIRGLVVPDVPLE--ETESLQKEAMKNKIELVLFTT-----PTTPTDRMKA-------IVEA--SE 216 (311)
Q Consensus 155 g~~~fi~~~~~--aGadGviipDlp~e--e~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~-------i~~~--a~ 216 (311)
.+.++.+.+ .|++ |+.|..-+ .........++++...+.+.. |.+++++... ..+. ..
T Consensus 79 --~~v~~aal~~~~Ga~--iINdIsg~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 154 (262)
T d1f6ya_ 79 --IKAIEAGLKKCKNRA--MINSTNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPM 154 (262)
T ss_dssp --HHHHHHHHHHCSSCE--EEEEECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCG
T ss_pred --cHHHHHHHHhhcccc--eeechhcccchHHHHHHHHhcCCceEEEEecCCcccccCHHHHHHHHHHHHHHHHHcCCCH
Confidence 345666655 5877 46665443 234456677888876665532 3444443321 1111 23
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEee-----CCCCHH-----HHHHHHHcCCcEEEEhh
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGF-----GISKPE-----HVQQVAGWGADGVIVGS 280 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGf-----GIst~e-----~v~~v~~~GADGvIVGS 280 (311)
.-+++-...|.-++.........+.++++++.. ..|+.+|- |....+ -+.....+|.|+.||.-
T Consensus 155 ~~Ii~DPgi~~~~~~~~~~~~~le~l~~l~~~~~~g~~~l~G~Sn~Sfg~~~r~~ln~~~l~~a~~aGl~~aIv~~ 230 (262)
T d1f6ya_ 155 EDLYIDPLILPANVAQDHAPEVLKTLQQIKMLADPAPKTVLGLSNVSQNCQNRPLINRTFLAMAMACGLMSAIADA 230 (262)
T ss_dssp GGEEEECCCCCTTTCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGGGTTCSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred HHhhccceeeeccccchHHHHHHHHHHHHHHHHhhccceeeeeeccccccchhhHHHHHHHHHHHHccCCccccCc
Confidence 346665544321111122233467788888754 67888863 332222 24445678889888854
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=97.38 E-value=0.011 Score=51.29 Aligned_cols=129 Identities=20% Similarity=0.280 Sum_probs=75.1
Q ss_pred HHHHHHHcCCcEEEe---cCCCh-----hhHHHHHHHHHHcCCCeEEEeCC-------CChHHHHHHHHH----hCCceE
Q 021527 159 FMSTVRDIGIRGLVV---PDVPL-----EETESLQKEAMKNKIELVLFTTP-------TTPTDRMKAIVE----ASEGFV 219 (311)
Q Consensus 159 fi~~~~~aGadGvii---pDlp~-----ee~~~~~~~~~~~gi~~I~lisp-------~t~~eri~~i~~----~a~gfi 219 (311)
.++++.+.|+|+|-+ ++-+. ++..++.++|+++|+..+.-.-| ..+.+.+...++ ....++
T Consensus 95 sve~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDiv 174 (251)
T d1ojxa_ 95 SVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAM 174 (251)
T ss_dssp CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEE
T ss_pred CHHHHHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEE
Confidence 467789999999866 23232 23667889999999987765433 222344433222 233444
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCC--CCHHH----HHHHHHcCCcEEEEhhHhhchhhhcCCch
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGI--SKPEH----VQQVAGWGADGVIVGSAMVKLLGEAQSPE 293 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGI--st~e~----v~~v~~~GADGvIVGSaiv~~~~~~~~~~ 293 (311)
.+- .+| +..++-+.++..+.+||++-+|- .+.++ ++...+.||-|+++|=.+... .++.
T Consensus 175 K~~----~p~-------~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~----~~p~ 239 (251)
T d1ojxa_ 175 KIK----YTG-------DPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR----RDAL 239 (251)
T ss_dssp EEC----CCS-------SHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS----TTHH
T ss_pred Eec----CCC-------cHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCc----CcHH
Confidence 431 222 22344444555667886665444 34544 455668899999999888752 2344
Q ss_pred hHHHHHHHH
Q 021527 294 EGLKELEKF 302 (311)
Q Consensus 294 ~~~~~~~~~ 302 (311)
..++.+...
T Consensus 240 ~~~~al~~i 248 (251)
T d1ojxa_ 240 KFARALAEL 248 (251)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555443
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=97.33 E-value=0.00059 Score=63.59 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHcCCCeEEEe-CCCChHHHHHHHHHhCCceEEEEe---cCCccC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKNKIELVLFT-TPTTPTDRMKAIVEASEGFVYLVS---SIGVTG 229 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~gi~~I~li-sp~t~~eri~~i~~~a~gfiY~vs---~~G~TG 229 (311)
.++++.+.++|+|-+++ |... +...++.+.+++...+..+.+ +-.|. +-...+.+..-..|-+.- ...+|.
T Consensus 153 ~~ra~~L~~aG~D~ivI-D~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~-e~a~~L~~~GaD~VkVGiGpGs~CtTr 230 (388)
T d1eepa_ 153 IERVEELVKAHVDILVI-DSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTK-EAALDLISVGADCLKVGIGPGSICTTR 230 (388)
T ss_dssp HHHHHHHHHTTCSEEEE-CCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSH-HHHHHHHTTTCSEEEECSSCSTTSHHH
T ss_pred HHHHHHHHhhccceeee-eccccchHHHHHHHHHHHHHCCCCceeeccccCH-HHHHHHHhcCCCeeeeccccccccccc
Confidence 46778889999999654 5443 334555666665544433333 33343 444444444333333311 111222
Q ss_pred CCCCCC-chHHHH--HHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 230 ARASIS-GHVQTL--LREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 230 ~~~~~~-~~~~~~--l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
...++- |.+... +.+......+||+..+||+++-|+.+.+.+|||.|-+||.|....+.
T Consensus 231 ~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Es 292 (388)
T d1eepa_ 231 IVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKES 292 (388)
T ss_dssp HHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTS
T ss_pred cccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEEeccceeecchhhhcccCC
Confidence 222221 222222 22333445799999999999999999999999999999999987753
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.30 E-value=0.00038 Score=64.53 Aligned_cols=137 Identities=18% Similarity=0.139 Sum_probs=83.8
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+-+..|.++|+|+|-+. .+.| -+ +...+.++++|++.++|+++- |..- + +-.
T Consensus 118 ~~r~~~l~~aGvd~ivID------~A~G--------------h~-~~~i~~lK~ir~~~~~~vIaG---NVaT-~--e~~ 170 (368)
T d2cu0a1 118 IKRAIELDKAGVDVIVVD------TAHA--------------HN-LKAIKSMKEMRQKVDADFIVG---NIAN-P--KAV 170 (368)
T ss_dssp HHHHHHHHHTTCSEEEEE------CSCC--------------CC-HHHHHHHHHHHHTCCSEEEEE---EECC-H--HHH
T ss_pred HHHHHHHHHcCCCEEEec------Cccc--------------ch-hhhhhhhhhhhhhcccceeec---cccC-H--HHH
Confidence 456778889999999997 3333 22 245678999999988888763 3111 1 111
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQ 239 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~ 239 (311)
. ...|+|++-+. +..- +-.|+ |. +||..-+.-..+.
T Consensus 171 ~---~l~gaD~VkVG------------------IG~G---s~CTT--r~------------------~tGvG~Pq~sAi~ 206 (368)
T d2cu0a1 171 D---DLTFADAVKVG------------------IGPG---SICTT--RI------------------VAGVGVPQITAVA 206 (368)
T ss_dssp T---TCTTSSEEEEC------------------SSCS---TTBCH--HH------------------HTCCCCCHHHHHH
T ss_pred H---hhhcCcceeec------------------ccCc---ccccc--hh------------------hcccccchHHHHH
Confidence 1 12577876543 1110 11222 11 1222101111112
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
+ +...+...++||+..+||+++-|+.+.+..|||.|.+||.|....+.
T Consensus 207 e-~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Es 254 (368)
T d2cu0a1 207 M-VADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEA 254 (368)
T ss_dssp H-HHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTC
T ss_pred H-HHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhcccccc
Confidence 2 22223334799999999999999999999999999999999887653
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=97.25 E-value=0.0038 Score=55.08 Aligned_cols=159 Identities=16% Similarity=0.247 Sum_probs=99.5
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
+.+.+..++.++.|.+.|||+|.+|-..+-|-++--..+. .++-+...++.+++ .++++=+-+|.
T Consensus 22 ~~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~e----------E~~Rl~pvi~~l~~-~~~~iSIDT~~---- 86 (264)
T d1ad1a_ 22 FNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEE----------ELNRVLPVVEAIVG-FDVKISVDTFR---- 86 (264)
T ss_dssp TCSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHH----------HHHHHHHHHHHHTT-SSSEEEEECSC----
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHH----------HHHhhhhHhhhhcc-cCcccchhhhh----
Confidence 4567889999999999999999999999988776311111 11233456666654 57889898874
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeEEEeCCCChH-------------HHHHHHHHhC--C
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELVLFTTPTTPT-------------DRMKAIVEAS--E 216 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I~lisp~t~~-------------eri~~i~~~a--~ 216 (311)
-+-++.|.+.|++ ++.|+. ...-.++.+.+++++...|.+-++.++. ++++...+.. .
T Consensus 87 ----~eVa~~al~~Ga~--iINDVs~g~~d~~~~~~va~~~~~~ilmH~~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~ 160 (264)
T d1ad1a_ 87 ----SEVAEACLKLGVD--IINDQWAGLYDHRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPS 160 (264)
T ss_dssp ----HHHHHHHHHTTCC--EEEETTTTSSCTHHHHHHHHTTCEEEEECCCCTTCCSCHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred ----HHHHHHHHhcCCc--EeeccccccccccHHHHHhhcCcceeeeeeccccccCccchhhhhHHHHHHHHHHhhcccc
Confidence 2456678899999 567763 2223357778899998888776544441 2222222211 1
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEe
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVG 256 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vG 256 (311)
.-+.+-...|. | .....-.++++++... .+.||++|
T Consensus 161 ~~IilDPGiGF-g---Kt~~~n~~ll~~l~~~~~~g~PiLiG 198 (264)
T d1ad1a_ 161 NKIWLDPGIGF-A---KTRNEEAEVMARLDELVATEYPVLLA 198 (264)
T ss_dssp GGEEEECCTTS-S---CCHHHHHHHHHCHHHHHTTCSCBEEC
T ss_pred ceEEeccCcCc-c---ccchhHHHHHHHHHHhhccCCceeee
Confidence 23566555553 2 1122334556655442 57899887
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=97.23 E-value=0.0041 Score=52.19 Aligned_cols=187 Identities=13% Similarity=0.128 Sum_probs=107.2
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|||.+=+-+--..| +-++.++.-++++.+... -.+|.++... ..+..
T Consensus 11 ~ed~~~~~~~gad~iGfif~~~Sp----------------R~vs~~~a~~i~~~~~~~-~~~V~Vf~~~------~~~~i 67 (200)
T d1v5xa_ 11 LEDALLAEALGAFALGFVLAPGSR----------------RRIAPEAARAIGEALGPF-VVRVGVFRDQ------PPEEV 67 (200)
T ss_dssp HHHHHHHHHHTCSEEEEECCTTCT----------------TBCCHHHHHHHHHHSCSS-SEEEEEESSC------CHHHH
T ss_pred HHHHHHHHhCCCCEEEEEcCCCCC----------------CCcCHHHHHHHHHhhcCc-eeeeeeeeec------hhhhh
Confidence 577888999999998664311222 124554444455444432 2457776432 23444
Q ss_pred HHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchH
Q 021527 160 MSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHV 238 (311)
Q Consensus 160 i~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~ 238 (311)
.+.+.+.+.|.+-++ +.++|.+. .+++ .+..+..+...... .. ++......++.+-+..+.+|...+.+.
T Consensus 68 ~~~~~~~~~d~vQlHg~e~~~~~~----~l~~-~~~iik~~~~~~~~-~~-~~~~~~~~~~L~D~~~~g~g~~~~~~~-- 138 (200)
T d1v5xa_ 68 LRLMEEARLQVAQLHGEEPPEWAE----AVGR-FYPVIKAFPLEGPA-RP-EWADYPAQALLLDGKRPGSGEAYPRAW-- 138 (200)
T ss_dssp HHHHHHTTCSEEEECSCCCHHHHH----HHTT-TSCEEEEEECSSSC-CG-GGGGSSCSEEEEECSSTTSCCCCCGGG--
T ss_pred hhhhcccccccccccccCCHHHHH----HHhh-ccccceeeccCchh-hH-HHhhcchhheeecccccCcccccchHH--
Confidence 556788999999887 44444333 2322 34444444332211 11 122222334444455545554333221
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
...+. ....|+++++||+ ++|++++...+.+||=|=|.+...-+ ....+++++|++.++.
T Consensus 139 ---~~~~~-~~~~~~~LAGGl~-~~Nv~~~~~~~p~gvDvsSGvE~~~G-----~KD~~ki~~f~~~~~~ 198 (200)
T d1v5xa_ 139 ---AKPLL-ATGRRVILAGGIA-PENLEEVLALRPYALDLASGVEEAPG-----VKSAEKLRALFARLAS 198 (200)
T ss_dssp ---GHHHH-HTTSCEEECSSCC-STTHHHHHHHCCSEEEESGGGEEETT-----EECHHHHHHHHHHHHH
T ss_pred ---Hhhhh-hccCceEecCCCC-HHHHHHHHhcCCCEEEEcCceECCCC-----ccCHHHHHHHHHHHHh
Confidence 11111 1357999999997 79999999999999999999875322 1245778888887764
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=97.22 E-value=0.0035 Score=55.53 Aligned_cols=157 Identities=17% Similarity=0.288 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...+.++.|.+.|||+|.+|-..+-|-++--.-+.= ++-+...++.+++..++||=+-+|.
T Consensus 42 ~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE----------~~rl~p~i~~~~~~~~~~iSIDT~~-------- 103 (273)
T d1tx2a_ 42 DAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEE----------IKRVVPMIQAVSKEVKLPISIDTYK-------- 103 (273)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHH----------HHHHHHHHHHHHHHSCSCEEEECSC--------
T ss_pred HHHHHHHHHHHHCCCCEEEeeceeccccccccCHHHH----------HHhhchhHHhhhccceEEEehHHhh--------
Confidence 5788889999999999999999988887762111110 1223456677777788899998874
Q ss_pred HHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeEEEeCCCCh-------------HHHHHHHHHhC--CceEE
Q 021527 157 DNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELVLFTTPTTP-------------TDRMKAIVEAS--EGFVY 220 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I~lisp~t~-------------~eri~~i~~~a--~gfiY 220 (311)
.+-++.+.++|++ ++.|.. ...-.++...+++++...+.+-.+..+ .++++...+.. ..-|.
T Consensus 104 ~~Va~~al~~G~~--iINDvsg~~~D~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~~~~~~~~~~i~~~~~~GI~~~~Ii 181 (273)
T d1tx2a_ 104 AEVAKQAIEAGAH--IINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENII 181 (273)
T ss_dssp HHHHHHHHHHTCC--EEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHcCCe--EEeccccccchhHHHHHHHhhcccccccccccccccccccchhhhhHHHHHHHHHHcCCChheEe
Confidence 2456778899999 466654 222234667778889888877544433 14444433321 22366
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEee
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGF 257 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGf 257 (311)
+-...|. | .....-.+++++++.. .+.||++|.
T Consensus 182 iDPGiGF-g---K~~~~n~~ll~~i~~l~~~g~PilvG~ 216 (273)
T d1tx2a_ 182 LDPGIGF-A---KTPEQNLEAMRNLEQLNVLGYPVLLGT 216 (273)
T ss_dssp EECCTTS-S---CCHHHHHHHHHTGGGGGGGCSCBEEEC
T ss_pred cCccCCc-c---chHHHHHHHHhhhcccccCCCcEEEEe
Confidence 6555542 2 1123344667777654 378999874
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.20 E-value=0.011 Score=53.60 Aligned_cols=68 Identities=25% Similarity=0.388 Sum_probs=48.7
Q ss_pred HHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHH-HHHHHHHHHHHhh
Q 021527 240 TLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL-KELEKFAKSLKSA 309 (311)
Q Consensus 240 ~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~-~~~~~~~~~l~~~ 309 (311)
+.+..+++.. ++||++.+||++.-|+.+.+-.|||.|-+|-.+...+... .++++ +.++.+.++|+.+
T Consensus 267 ~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~--g~~gv~~~i~~l~~EL~~~ 337 (359)
T d1goxa_ 267 MALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAE--GEAGVKKVLQMMRDEFELT 337 (359)
T ss_dssp HHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred hhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhc--cHHHHHHHHHHHHHHHHHH
Confidence 3344444432 6899999999999999999999999999999998766421 12333 3456666677654
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.0034 Score=53.81 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=65.3
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+-...++.+++.++++.+. .-++++++|.|+ +.. ...+.++++++ .+.++++..-+
T Consensus 8 vALD~~~~~eal~i~~~l~-~~i~~iKiG~~l---------~~~-------------~G~~~i~~l~~-~~~~if~D~K~ 63 (231)
T d1eixa_ 8 VALDYHNRDDALAFVDKID-PRDCRLKVGKEM---------FTL-------------FGPQFVRELQQ-RGFDIFLDLKF 63 (231)
T ss_dssp EEECCSSHHHHHHHHTTSC-TTTCEEEEEHHH---------HHH-------------HHHHHHHHHHH-TTCCEEEEEEE
T ss_pred EEEcCCCHHHHHHHHHHhC-CcceEEEECHHH---------Hhh-------------cCHHHHHHHHh-cCchhhHhhHh
Confidence 5667789999999999874 459999999554 211 12457777775 56788877655
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcC
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNK 192 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~g 192 (311)
.++-.+ ....++.+.+.|+|.+.++-+.-.+ .....+..++.|
T Consensus 64 ~DI~nt-~~~~~~~~~~~~~~~~tvh~~~g~~~l~~~~~~~~~~~ 107 (231)
T d1eixa_ 64 HDIPNT-AAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFG 107 (231)
T ss_dssp CSCHHH-HHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGG
T ss_pred hcCcHH-HHHHHHhhhcccceEEEEeccCcHHHHHHHHHhhhhcC
Confidence 544322 2456778888999999997554333 333444444444
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.16 E-value=0.0035 Score=57.77 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCcEEEecCCChh---hHHHHHHHHHHcCCCe-EEEeCCCChHHHHHHHHHhCCceEEEEec---CCccC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLE---ETESLQKEAMKNKIEL-VLFTTPTTPTDRMKAIVEASEGFVYLVSS---IGVTG 229 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~e---e~~~~~~~~~~~gi~~-I~lisp~t~~eri~~i~~~a~gfiY~vs~---~G~TG 229 (311)
.+.++.+.++|+|-+++ |.... ...+..+.++++..+. |..-+..|. +-...+.+..-..|-+.-. ..+|.
T Consensus 109 ~er~~~l~~agvd~ivI-D~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~-e~a~~L~~aGaD~VkVGiG~Gs~CTTr 186 (365)
T d1zfja1 109 FERAEALFEAGADAIVI-DTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATA-EGARALYDAGVDVVKVGIGPGSICTTR 186 (365)
T ss_dssp HHHHHHHHHHTCSEEEE-CCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSH-HHHHHHHHTTCSEEEECSSCCTTBCHH
T ss_pred HHHHHHHHHcCCCEEEE-ECCcccccchhHHHHHHHhhCCCcceeecccccH-HHHHHHHhcCCceEEeeecccccccCc
Confidence 35677788999998654 65433 2334445555544332 222233443 4444454543333333111 11222
Q ss_pred CCCCCC-chHHH--HHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 230 ARASIS-GHVQT--LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 230 ~~~~~~-~~~~~--~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
..+++- |.+.. .+.+.+...++||+..+||++.-|+.+.+.+|||.|-+||.|...-+.
T Consensus 187 ~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~Es 248 (365)
T d1zfja1 187 VVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEA 248 (365)
T ss_dssp HHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSC
T ss_pred ceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEecchhccccCC
Confidence 223332 22221 233444556899999999999999999999999999999999988754
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.13 E-value=0.00033 Score=60.83 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 202 TTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 202 ~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..|.+..+.+.+..-..+|++...+..+.+ +.....+..+++.. .|+.+|+||++.++++++++.|||-|++||+
T Consensus 30 ~dP~~~a~~~~~~g~~~l~ivDLda~~~~~----~~~~~~~~~~~~~~-~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~ 104 (241)
T d1qo2a_ 30 KDPVELVEKLIEEGFTLIHVVDLSNAIENS----GENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHHHCC----CTTHHHHHHGGGGG-GGEEEESSCCSHHHHHHHHHTTCCEEEECHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccccccC----Ccchhheehhcccc-cchhhhhhhhhhhhhhhccccccceEecCcc
Confidence 345566666666555678888765543222 11234566666654 7999999999999999999999999999998
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
+.+
T Consensus 105 ~~~ 107 (241)
T d1qo2a_ 105 VLE 107 (241)
T ss_dssp HHH
T ss_pred ccc
Confidence 876
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.11 E-value=0.017 Score=50.38 Aligned_cols=184 Identities=13% Similarity=0.135 Sum_probs=107.1
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEec
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTY 147 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y 147 (311)
.-|.-|.+.+.+.++.+.+.|+|.|-++--.+ +++. .+.++-.++++.+.+. .++|+++-+-
T Consensus 15 ~d~~iD~~~~~~~i~~l~~~Gv~Gi~v~GstG----E~~~------------Ls~~Er~~~~~~~~~~~~~~~~vi~gv~ 78 (295)
T d1o5ka_ 15 KNGELDLESYERLVRYQLENGVNALIVLGTTG----ESPT------------VNEDEREKLVSRTLEIVDGKIPVIVGAG 78 (295)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEEESSGGG----TGGG------------CCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred CCCcCCHHHHHHHHHHHHHcCCCEEEECeecc----chhh------------CCHHHHHHHhhhhccccccCCceEeecc
Confidence 44556778999999999999999998862111 1111 3455555555555432 4689888754
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHHH-HHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCC
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETESL-QKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASE 216 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~~-~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~ 216 (311)
.+... ..-++.+.+.++|+|++++. - ...++..++ ...++..++..+++-.| ..+.+.+.++.+.-.
T Consensus 79 ~~st~--~ai~~a~~A~~~Gad~v~v~pP~y~~~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~~~ 156 (295)
T d1o5ka_ 79 TNSTE--KTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLK 156 (295)
T ss_dssp CSCHH--HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCT
T ss_pred cccHH--HHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHhhcc
Confidence 33221 12467788999999999882 1 123455554 44455566666655333 233566666655555
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.++++-...+ ........+...+.. +....+.+|-. +.+-.....|++|.+-|++
T Consensus 157 ni~~iK~~~~-------~~~~~~~~~~~~~~~-~~~~~v~~g~~--~~~~~~~~~Ga~G~i~~~~ 211 (295)
T d1o5ka_ 157 NVVGIKEANP-------DIDQIDRTVSLTKQA-RSDFMVWSGND--DRTFYLLCAGGDGVISVVS 211 (295)
T ss_dssp TEEEEEECCC-------CHHHHHHHHHHHHHH-CTTCEEEESSG--GGHHHHHHHTCCEEEESGG
T ss_pred cccceecCCc-------chhhhhhHHHHhhhc-CCcceeccccc--cchhhhhhcCCCccccccc
Confidence 6665532211 112233334444333 23344555543 3455667789999999974
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=97.09 E-value=0.0045 Score=56.84 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHH-cCCCe-EEEeCCCChHHHHHHHHHhCCceEEEEec---CCc
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMK-NKIEL-VLFTTPTTPTDRMKAIVEASEGFVYLVSS---IGV 227 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~-~gi~~-I~lisp~t~~eri~~i~~~a~gfiY~vs~---~G~ 227 (311)
..+.++.+.++|+|-++ .|... +...++...+++ +.... |..-+-.| .+..+.+.+..-.++-+.-. ..+
T Consensus 111 ~~~~~~~L~~ag~d~i~-IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNVaT-~e~~~~L~~aGaD~vkVGIG~Gs~CT 188 (362)
T d1pvna1 111 FRERVPALVEAGADVLC-IDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVD-GEGFRYLADAGADFIKIGIGGGSICI 188 (362)
T ss_dssp HHHHHHHHHHHTCSEEE-ECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEECS-HHHHHHHHHHTCSEEEECSSCSTTBC
T ss_pred hHHHHHHHhhcCceEEe-echhccchhHHHHHHHHHHHhhccceeeecccccC-HHHHHHHHHhCCcEEEeccccccccc
Confidence 35667788999999864 45443 333444444433 32222 22223334 45555665654444444211 113
Q ss_pred cCCCCCCCchHHHHHHHHh---h------cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 228 TGARASISGHVQTLLREIK---E------SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk---~------~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
|-..+++..+....+.++. + ..++||+..+||+++-|+.+.+.+|||.|-+||.|...-+
T Consensus 189 Tr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~E 257 (362)
T d1pvna1 189 TREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEE 257 (362)
T ss_dssp HHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTT
T ss_pred chhhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcccc
Confidence 3333333211222233322 1 1258999999999999999999999999999999987664
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.0023 Score=53.88 Aligned_cols=185 Identities=13% Similarity=0.146 Sum_probs=104.2
Q ss_pred HHHHHHHHHCCCCEEEEcC-CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGV-PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~-PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.|||++=+-+ |-| | +-++.++.-++++.++ ..++.++... ..+.
T Consensus 11 ~~d~~~~~~~gaD~iGfif~~~S-p----------------R~Vs~~~a~~i~~~~~---~~~V~Vfv~~------~~~~ 64 (198)
T d1piia1 11 GQDAKAAYDAGAIYGGLIFVATS-P----------------RCVNVEQAQEVMAAAP---LQYVGVFRNH------DIAD 64 (198)
T ss_dssp HHHHHHHHHHTCSEEEEECCTTC-T----------------TBCCHHHHHHHHHHCC---CEEEEEESSC------CHHH
T ss_pred HHHHHHHHhCCCCEEEEEccCCC-C----------------CCcCHHHHHHhhhhcc---cccceeeecc------chhh
Confidence 5788888999999986643 211 2 1245544444444332 2245555432 2344
Q ss_pred HHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCch
Q 021527 159 FMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGH 237 (311)
Q Consensus 159 fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~ 237 (311)
..+.+.+.+.|.+=++. .+.+....++.... ..+..+.......... .+.. ..... ..+-+..|.||.. .+.+
T Consensus 65 i~~~~~~~~~d~iQlHG~e~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~-~~~d~-~lld~~~gGtG~~--fdw~ 138 (198)
T d1piia1 65 VVDKAKVLSLAAVQLHGNEEQLYIDTLREALP-AHVAIWKALSVGETLP-AREF-QHVDK-YVLDNGQGGSGQR--FDWS 138 (198)
T ss_dssp HHHHHHHHTCSEEEECSCCCHHHHHHHHHHSC-TTSEEEEEEECSSSCC-CCCC-TTCCE-EEEESCSCCSSCC--CCGG
T ss_pred HHHhhhcccccceeecCCccHHHHHHHhcccc-ccccceeccchhhhhh-HHHh-hhhcc-cccCCccccccee--eehh
Confidence 45667888999888864 33333333332211 1222222222221100 0000 11111 2224566777763 4443
Q ss_pred HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 238 VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+ ++.....|+++++||+ |++++++.+.+.+||=|=|.+...-+ ....+++++|++.+|.
T Consensus 139 ~------~~~~~~~~~~LAGGl~-~~Nv~~a~~~~p~gvDvsSGvE~~pG-----~KD~~ki~~f~~~vr~ 197 (198)
T d1piia1 139 L------LNGQSLGNVLLAGGLG-ADNCVEAAQTGCAGLDFNSAVESQPG-----IKDARLLASVFQTLRA 197 (198)
T ss_dssp G------GTTSCCTTEEEESSCC-TTTHHHHHTTCCSEEEECGGGEEETT-----EECHHHHHHHHHHHHC
T ss_pred h------hcccccceeEEecCCC-HHHHHHHHhcCCCEEEeCCcccCCCC-----CcCHHHHHHHHHHHhc
Confidence 2 2344557999999995 89999999999999999998876322 1245788999988874
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=97.03 E-value=0.062 Score=46.64 Aligned_cols=176 Identities=17% Similarity=0.251 Sum_probs=105.2
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.|.+.|+|.|-++---++ + .-.+.++-.++++.+.+. -++|+++-+..+
T Consensus 19 ~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE----~------------~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 82 (292)
T d1xkya1 19 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGE----S------------PTLTSEEKVALYRHVVSVVDKRVPVIAGTGSN 82 (292)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTTTT----G------------GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred cCcCHHHHHHHHHHHHHCCCCEEEECeEccc----h------------hhCCHHHHHHHHHHHHHHhCCCceEEEecCcc
Confidence 4455689999999999999999999622211 1 114566666667666543 468988865443
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec-----CCChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP-----DVPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip-----Dlp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.++++|+|++++. -..-++..+ |...+...++..+++=.| ..+.+-+.++++ -..+
T Consensus 83 s~~--~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~-~p~v 159 (292)
T d1xkya1 83 NTH--ASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE-IENI 159 (292)
T ss_dssp CHH--HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT-STTE
T ss_pred cHH--HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhcc-CCCE
Confidence 221 12367778999999999883 122244444 455667778777765332 244566666654 4556
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHH-hhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREI-KESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~v-k~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+-.. ++ + . ....++ +... +..++.|.+ +.......+|++|++.|++
T Consensus 160 ~giK~~---~~-----~--~-~~~~~~~~~~~~~~~v~~G~~----~~~~~~~~~G~~G~~~~~~ 209 (292)
T d1xkya1 160 VAIKDA---GG-----D--V-LTMTEIIEKTADDFAVYSGDD----GLTLPAMAVGAKGIVSVAS 209 (292)
T ss_dssp EEEEEC---SS-----C--H-HHHHHHHHHSCTTCEEEESSG----GGHHHHHHTTCCEEEESTH
T ss_pred EEEecc---cc-----c--h-hhhheeeeecCCCCEEEECCc----cccchHHHcCCCccccchh
Confidence 544211 11 1 1 123333 2322 345554443 3445556689999999986
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.017 Score=48.43 Aligned_cols=188 Identities=15% Similarity=0.184 Sum_probs=107.5
Q ss_pred HHHHHHHHHCCCCEEEEcC-CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGV-PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~-PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.|||++=+-+ |- .| +-++.++.-++.+.+... ..+|.++..-+ .+.
T Consensus 12 ~~da~~~~~~gad~iGfI~~~~-Sp----------------R~Vs~~~a~~i~~~~~~~-~~~V~V~v~~~------~~~ 67 (205)
T d1nsja_ 12 LEDALFSVESGADAVGFVFYPK-SK----------------RYISPEDARRISVELPPF-VFRVGVFVNEE------PEK 67 (205)
T ss_dssp HHHHHHHHHHTCSEEEEECCTT-CT----------------TBCCHHHHHHHHHHSCSS-SEEEEEESSCC------HHH
T ss_pred HHHHHHHHhCCCCEEeEeccCC-CC----------------CccCHHHHHHHHhhhccc-ceeeccccccH------HHH
Confidence 6788888999999986532 21 12 124444444454444432 23566654322 233
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe---cCCccCCCCCCC
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS---SIGVTGARASIS 235 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs---~~G~TG~~~~~~ 235 (311)
..+.+.+.+.|-+=+++- |..++...++.. ...+..+.... ...+..+......++.+.+ ..|.||.+ .+
T Consensus 68 i~~~~~~~~~~~vQlhg~---e~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~d~~~~~~GGtG~~--~d 140 (205)
T d1nsja_ 68 ILDVASYVQLNAVQLHGE---EPIELCRKIAER-ILVIKAVGVSN-ERDMERALNYREFPILLDTKTPEYGGSGKT--FD 140 (205)
T ss_dssp HHHHHHHHTCSEEEECSC---CCHHHHHHHHTT-SEEEEEEEESS-HHHHHHHGGGTTSCEEEEESCSSSSSCCSC--CC
T ss_pred HHhhhhhccccchhccch---hhHHHHhhcccc-eeeeeeccccc-hHHHHHHhhcccceeeeccccccCCCCCcc--cc
Confidence 344567789999888742 222233344432 33343333333 3444444444444444433 23445543 44
Q ss_pred chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 236 GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 236 ~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.. .++.++.. ..|++.++||+ ++|+.++++ .+.+||=|=|.+...-+ ....+++++|++.+|+
T Consensus 141 w~---~~~~~~~~-~~~~~LAGGl~-~~Nv~~ai~~~~p~gvDvsSgvE~~~G-----~KD~~ki~~f~~~vr~ 204 (205)
T d1nsja_ 141 WS---LILPYRDR-FRYLVLSGGLN-PENVRSAIDVVRPFAVDVSSGVEAFPG-----KKDHDSIKMFIKNAKG 204 (205)
T ss_dssp GG---GTGGGGGG-SSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGGEEETT-----EECHHHHHHHHHHHHT
T ss_pred hh---hcccchhc-ccceeeecCCC-HHHHHHHHHHhCCCEEEEcCcccCCCC-----ccCHHHHHHHHHHHhC
Confidence 43 23333332 35899999997 799988774 78999999888876321 2346789999998875
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=96.97 E-value=0.0014 Score=60.20 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHH-----HHHHHcCCCHHH----HHHHHHHhhccCC-CcEEEEec
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAA-----TRSLARGTNFNA----ILSMLKEVVPQMS-CPIALFTY 147 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~-----~~Al~~G~~~~~----~~~~i~~ir~~~~-iPiilm~Y 147 (311)
.+.+.++...++|.|+|||= -+.|-.+.+-. .|--+.|=++++ .+++++.||+.+. -+|.+--
T Consensus 161 ~f~~AA~rA~~aGfDgVEIH------~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~- 233 (363)
T d1vyra_ 161 DFRQAVANAREAGFDLVELH------SAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRV- 233 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEE------ECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEE-
T ss_pred HHHHHHHHHHHhccceeeec------ccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceee-
Confidence 58889999999999999994 34455554332 222233445554 3566777776643 2343321
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCc
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~ 227 (311)
++... .+.+.-.-...+|..++.+.+.+.|++.+-+..++.
T Consensus 234 -s~~~~--------------~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~------------------------ 274 (363)
T d1vyra_ 234 -SPIGT--------------FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDL------------------------ 274 (363)
T ss_dssp -CCSSC--------------BTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBT------------------------
T ss_pred -ccccc--------------ccchhhcccchHHHHHHHHHHHhcCCeeeecccCCc------------------------
Confidence 10000 000000011234556666667777777655433211
Q ss_pred cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 228 TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.+.. .. ...+-+.+|+.++.||++++ +.|++++.++++.| +|.|-+|-+++.
T Consensus 275 ~~~~-~~---~~~~~~~~~~~~~~~vi~~G-~~t~~~ae~~l~~G~~DlV~~gR~lia 327 (363)
T d1vyra_ 275 AGGK-PY---SEAFRQKVRERFHGVIIGAG-AYTAEKAEDLIGKGLIDAVAFGRDYIA 327 (363)
T ss_dssp TBCC-CC---CHHHHHHHHHHCCSEEEEES-SCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred cCCc-cc---cHHHHHHHHHhcCceEEecC-CCCHHHHHHHHHCCCcceehhhHHHHH
Confidence 1110 11 13456778888888886655 55799999999988 899999988775
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.014 Score=51.75 Aligned_cols=171 Identities=16% Similarity=0.281 Sum_probs=105.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.|.+.|||+|.+|-..+-|-++-...+. .++-+...++.++++.++||=+.+|.-
T Consensus 36 ~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~ee----------E~~Rl~pvi~~l~~~~~~~iSIDT~~~----- 100 (282)
T d1ajza_ 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEE----------ELQRVIPVVEAIAQRFEVWISVDTSKP----- 100 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHH----------HHHHHHHHHHHHHHHCCCEEEEECCCH-----
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHH----------HHHHHHHHHHHHhhcccceEEEEecCh-----
Confidence 45678899999999999999999999888776321111 123345677888877888898988742
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCCh--------------------HHHHHHHHHh
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTP--------------------TDRMKAIVEA 214 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~--------------------~eri~~i~~~ 214 (311)
+-++.|.++|++ ++.|..--...+..+.+.+++...|.+-.+..| .++++...+.
T Consensus 101 ---eVa~~al~~Ga~--iINDvsg~~~~~~~~~va~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~ 175 (282)
T d1ajza_ 101 ---EVIRESAKVGAH--IINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQA 175 (282)
T ss_dssp ---HHHHHHHHTTCC--EECCTTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHhcCce--EEechhhcccchhHHHhhccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHc
Confidence 356778899987 467765222223456677888887776432111 1233332222
Q ss_pred C--CceEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHc
Q 021527 215 S--EGFVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGW 271 (311)
Q Consensus 215 a--~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~ 271 (311)
. ..=+.+-...|. | + ....-.++++++.+. .+.|+++|. |...-+.++.+.
T Consensus 176 GI~~~~IilDPGiGF-g-K--~~~~n~~ll~~l~~~~~~~~PiLvG~--SRKsfi~~~~~~ 230 (282)
T d1ajza_ 176 GIAKEKLLLDPGFGF-G-K--NLSHNYSLLARLAEFHHFNLPLLVGM--SRKSMIGQLLNV 230 (282)
T ss_dssp TCCGGGEEEECCTTS-S-C--CHHHHHHHHHTGGGGGGGCSCBEECC--TTCHHHHHHHTC
T ss_pred CCcHhhEecCCCcCc-C-C--ChhhhHHHHhhcchhhccccceEEec--cHHHHHHHHhCC
Confidence 1 123666666653 2 1 123345677777664 378999864 444455555543
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=96.82 E-value=0.065 Score=46.62 Aligned_cols=176 Identities=11% Similarity=0.111 Sum_probs=103.8
Q ss_pred CCCChhhHHHHHHHHHH-CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecC
Q 021527 72 GDPDLSTTAEALKLLDS-CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYY 148 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~-~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~ 148 (311)
|..|.+.+.+.++.+.+ .|++.|-++--.++ + .-.+.++..++++.+++. -++|+++-+..
T Consensus 19 g~iD~~~l~~~i~~li~~~Gv~gi~v~GttGE----~------------~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~ 82 (293)
T d1f74a_ 19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGE----N------------FMLSTEEKKEIFRIAKDEAKDQIALIAQVGS 82 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTSCCSEEEESSGGGT----G------------GGSCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred CCcCHHHHHHHHHHHHHhCCCCEEEECccCcc----h------------hhCCHHHHhhhhheeeccccCcccccccccc
Confidence 56777899999998865 59999888522211 1 124556656666655432 46888776544
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecC-----CChhhHHH-HHHHHHHcCCCeEEEeCCCC-----hHHHHHHHHHhCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEETES-LQKEAMKNKIELVLFTTPTT-----PTDRMKAIVEASEG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee~~~-~~~~~~~~gi~~I~lisp~t-----~~eri~~i~~~a~g 217 (311)
+... ...+..+.+.++|+|++++.- ...++..+ |...+...++..+++=.|.. +.+-++++++. ..
T Consensus 83 ~s~~--~~iela~~a~~~Gad~i~~~pP~~~~~s~~~~~~~~~~v~~~~~~pi~iYn~P~~tg~~l~~~~l~~L~~~-~~ 159 (293)
T d1f74a_ 83 VNLK--EAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKN-PK 159 (293)
T ss_dssp SCHH--HHHHHHHHHHHHTCSEEECCCCCSSCCCHHHHHHHHHHHHHHHCCCEEEECCSSCSCHHHHHHHHHHHHTS-TT
T ss_pred ccHH--HHHHHHHHHHHcCCCEeeccCccccccchHHHHHHHhcccccCCceEEEEeeccceeccccchhhhhhhhc-cc
Confidence 3221 234577889999999987731 11244444 45556677888777666642 33556666542 34
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+-. .+| + ...+.++++.. +.-++.|.. +.+-..+..|++|.+-|.+
T Consensus 160 v~giK~---~~~-----~---~~~~~~~~~~~~~~~v~~g~~----~~~~~~~~~G~~G~i~~~~ 209 (293)
T d1f74a_ 160 VLGVKF---TAG-----D---FYLLERLKKAYPNHLIWAGFD----EMMLPAASLGVDGAIGSTF 209 (293)
T ss_dssp EEEEEE---CCS-----C---HHHHHHHHHHCTTSEEEECCG----GGHHHHHHTTCCEEEESTH
T ss_pred cccccc---CCC-----C---HHHHHHHhhcCCCeEEEeCcc----cccchhhhCCCcccccccc
Confidence 443311 111 1 13455555543 444444432 3455667899999999964
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.70 E-value=0.0026 Score=58.63 Aligned_cols=156 Identities=16% Similarity=0.193 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHH-----HHHHHcCCCHHH----HHHHHHHhhccCC-CcEEEEec
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAA-----TRSLARGTNFNA----ILSMLKEVVPQMS-CPIALFTY 147 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~-----~~Al~~G~~~~~----~~~~i~~ir~~~~-iPiilm~Y 147 (311)
.+.+.++.+.++|.|+|||= -+.|-.+.+-. +|--+.|=++++ .+++++.||+.+. ..+++.-
T Consensus 164 ~f~~AA~rA~~AGfDgVEIH------~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~- 236 (374)
T d1gwja_ 164 DYRQAAQRAKRAGFDMVEVH------AANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRL- 236 (374)
T ss_dssp HHHHHHHHHHHTTCSEEEEE------ECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEE-
T ss_pred HHHHHHHHHHHhCCCEEEec------cchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeee-
Confidence 58889999999999999993 23344443321 121223334444 3566677776542 2333321
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCc
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~ 227 (311)
++... ..|. ..+.+......+...+...|++.+-...|. .
T Consensus 237 -~~~~~--------------~~g~-~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~------------------------~ 276 (374)
T d1gwja_ 237 -TPFLE--------------LFGL-TDDEPEAMAFYLAGELDRRGLAYLHFNEPD------------------------W 276 (374)
T ss_dssp -CTTCC--------------CTTC-CCSCHHHHHHHHHHHHHHHTCSEEEEECSC------------------------B
T ss_pred -eeecc--------------ccCC-cccchHHHHHHhhccccccCceEEEeccCc------------------------c
Confidence 11100 0010 011111122233444455565554433222 2
Q ss_pred cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 228 TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
++.....+.. +.+.+|+.+++||++.+++ +++++.++++.| ||.|-+|=+++.
T Consensus 277 ~~~~~~~~~~---~~~~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~ia 330 (374)
T d1gwja_ 277 IGGDITYPEG---FREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIA 330 (374)
T ss_dssp TTBCCCCCTT---HHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred cCCCcchhHH---HHHHHHHHcCCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHH
Confidence 2222223332 4567888899999999999 689999999877 999999977765
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.0098 Score=55.19 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=45.3
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHhh
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
++||++.+||++.-||.+.+-.|||.|-+|-.+.+.+...+ .+.-.+.++.+..+|+.+
T Consensus 306 ~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~la~~G-~egv~~~l~~l~~EL~~~ 364 (414)
T d1kbia1 306 KLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYG-RNGVEKAIEILRDEIEMS 364 (414)
T ss_dssp TBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999998865321 122244555555666643
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=96.65 E-value=0.022 Score=49.79 Aligned_cols=215 Identities=17% Similarity=0.218 Sum_probs=123.7
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
-+|+ |.| |. ....+.++.|.++|+|++=|.+-..++ - ...+.++.++++.++.+.|+.
T Consensus 22 KIIa--TiG-Pa-s~~~~~l~~li~aGvdv~RiN~SHg~~------e------------~~~~~i~~iR~~~~~~g~~v~ 79 (258)
T d1pkla2 22 RIIC--TIG-PS-TQSVEALKGLIQSGMSVARMNFSHGSH------E------------YHQTTINNVRQAAAELGVNIA 79 (258)
T ss_dssp EEEE--ECC-GG-GCSHHHHHHHHHHTEEEEEEETTSSCH------H------------HHHHHHHHHHHHHHHTTCCCE
T ss_pred cEEE--eeC-CC-cCCHHHHHHHHHcCCCEEEEECCCCCH------H------------HHHHHHHHHHHHHHHhCCCcc
Confidence 3444 445 43 345688999999999999998555432 0 123456677777778888887
Q ss_pred EEecCc-chhccCH-HHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeEEEeCCCCh--HHHHHHHHHhCCce
Q 021527 144 LFTYYN-PILKRGV-DNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELVLFTTPTTP--TDRMKAIVEASEGF 218 (311)
Q Consensus 144 lm~Y~n-~i~~~g~-~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I~lisp~t~--~eri~~i~~~a~gf 218 (311)
++.-.. |-...+- ...++.+.+.|+|-+-+.=.- .++..++++.+++.|-+.-.+.--.+. .+.+.+|.+.++|.
T Consensus 80 i~~d~~gp~~~t~kd~~di~~a~~~~vD~ialSFVrs~~Dv~~ir~~l~~~~~~~~iiaKIE~~~al~nldeI~~~sDgI 159 (258)
T d1pkla2 80 IALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGI 159 (258)
T ss_dssp EEEECCCCCSSCHHHHHHHHHHHHHTCSEEEETTCCSHHHHHHHHHHHCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEE
T ss_pred ccccccccccccccHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHHHcCCCCceEEEecCchhhhhhhhHHhhCCee
Confidence 775443 2222222 235667889999998665222 245667888887776543333222333 36678888888886
Q ss_pred EEEEecCCccCCCCCCC--chHH-HHHHHHhhcCCCcEEEee---------CCCCHH---HHHHHHHcCCcEEEEhhHhh
Q 021527 219 VYLVSSIGVTGARASIS--GHVQ-TLLREIKESSTKPVAVGF---------GISKPE---HVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~--~~~~-~~l~~vk~~~~~Pv~vGf---------GIst~e---~v~~v~~~GADGvIVGSaiv 283 (311)
...- |--|...++. +.++ ..++..+ ..++|+++.. .+-|.. |+.....-|+||+.....-.
T Consensus 160 mIaR---GDLg~ei~~e~vp~~Qk~Ii~~~~-~~~kpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~imLs~ETa 235 (258)
T d1pkla2 160 MVAR---GDLGVEIPAEKVVVAQKILISKCN-VAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETA 235 (258)
T ss_dssp EECH---HHHTTTSCHHHHHHHHHHHHHHHH-HHTCCEEECSSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESHHHH
T ss_pred eEec---hhhhhhcchhhhhhHHHHHHHHHH-HcCCCEEEEeceeHhhccCCCCCHHHHHHHHHHHHhCCCEEEEccccc
Confidence 5332 2222221211 1122 2233333 3489999966 333333 55556667999998853222
Q ss_pred chhhhcCCchhHHHHHHHHHHHHHh
Q 021527 284 KLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
. +.-|.+.++.+...+++...
T Consensus 236 ~----G~~P~~~V~~l~~i~~~~E~ 256 (258)
T d1pkla2 236 K----GKYPNEVVQYMARICLEAQS 256 (258)
T ss_dssp T----CSCHHHHHHHHHHHHHHHHH
T ss_pred c----CCCHHHHHHHHHHHHHHHHh
Confidence 2 11244556666666655443
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.18 Score=43.89 Aligned_cols=212 Identities=17% Similarity=0.178 Sum_probs=120.5
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
+++.|++|+| |..+|+=|. ..++.++++|+|+|-+| |.+ |-++.--. --..+++++.+...+.
T Consensus 7 L~~~K~~g~k--i~~lTayD~------~~A~~~~~agvDiiLVG----DSl--gmv~~G~~---~T~~vt~d~mi~H~~a 69 (262)
T d1m3ua_ 7 LQKYKQEKKR--FATITAYDY------SFAKLFADEGLNVMLVG----DSL--GMTVQGHD---STLPVTVADIAYHTAA 69 (262)
T ss_dssp HHHHHHHTCC--EEEEECCSH------HHHHHHHHHTCCEEEEC----TTH--HHHTTCCS---SSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCc--EEEEEcCCH------HHHHHHHHCCCCEEEEc----CcH--HhcccCCC---CcceechHhHHHHHHH
Confidence 4455666665 345666654 67888899999999998 211 21110000 0013688888888998
Q ss_pred hhccCCCcEEEEe-cCcchhccC--HHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe--CCCC-----
Q 021527 134 VVPQMSCPIALFT-YYNPILKRG--VDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT--TPTT----- 203 (311)
Q Consensus 134 ir~~~~iPiilm~-Y~n~i~~~g--~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li--sp~t----- 203 (311)
+++..+-++++.. -|+.. ... .-+....+.++|+|.|-+.-- .+..+..+.+.+.||.++--+ .|.+
T Consensus 70 V~rga~~~~vv~DmPf~sy-~~~~~a~~~a~~l~~~GAdaVKlEgg--~~~~~~I~~L~~~gIPV~gHiGL~PQ~~~~~G 146 (262)
T d1m3ua_ 70 VRRGAPNCLLLADLPFMAY-ATPEQAFENAATVMRAGANMVKIEGG--EWLVETVQMLTERAVPVCGHLGLTPQSVNIFG 146 (262)
T ss_dssp HHHHCTTSEEEEECCTTSS-SSHHHHHHHHHHHHHTTCSEEECCCS--GGGHHHHHHHHHTTCCEEEEEESCGGGHHHHT
T ss_pred HHhccccceeEeccccccc-hhhHHHHHHHHHHHhcCCcEEEeccc--hhHHHHHHHHHHcCCeEEeehhhchhhhhhcC
Confidence 8876554544431 11111 111 123445677899999987632 355667888889999877432 3332
Q ss_pred --------hHHHHHHHHH------hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH
Q 021527 204 --------PTDRMKAIVE------ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA 269 (311)
Q Consensus 204 --------~~eri~~i~~------~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~ 269 (311)
.++. +++.+ .+.-|..+.. .+|. +.-+++.+.+++|++ |.|=..
T Consensus 147 G~r~qGkt~~ea-~~l~~~a~~le~AGaf~ivlE---------~vp~---~va~~It~~~~IPtI-GIGAG~-------- 204 (262)
T d1m3ua_ 147 GYKVQGRGDEAG-DQLLSDALALEAAGAQLLVLE---------CVPV---ELAKRITEALAIPVI-GIGAGN-------- 204 (262)
T ss_dssp SSCCCCCSHHHH-HHHHHHHHHHHHHTCCEEEEE---------SCCH---HHHHHHHHHCSSCEE-EESSCT--------
T ss_pred CccccCccHHHH-HHHHHHHHHHHhhcceEEEEe---------cccH---HHHHHHHhhhcceeE-eecccC--------
Confidence 2222 12222 2333433332 2243 456677788999994 888764
Q ss_pred HcCCcEEEEhh-Hhhchhhhc---------CCchhHHHHHHHHHHHHHhh
Q 021527 270 GWGADGVIVGS-AMVKLLGEA---------QSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 270 ~~GADGvIVGS-aiv~~~~~~---------~~~~~~~~~~~~~~~~l~~~ 309 (311)
++||-|.=+ -+.-.-.+. +..+...+.+++|.++.+..
T Consensus 205 --~cDGQvlv~~DilG~~~~~~Pkf~k~y~~~~~~~~~a~~~y~~dV~~~ 252 (262)
T d1m3ua_ 205 --VTDGQILVMHDAFGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESG 252 (262)
T ss_dssp --TSSEEEECHHHHTTCSCSSCCTTCCCSSTTTSSHHHHHHHHHHHHHHT
T ss_pred --CCcceEEehhHhhCCCCCCCCchHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 378876532 222211111 11245577889999988764
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.012 Score=51.27 Aligned_cols=204 Identities=16% Similarity=0.158 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc-chhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN-PILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n-~i~~~g~ 156 (311)
...+.++.|.++|+|++=|.+-..++ - ...+.++.++++.++.+.|+.++.-+. |-..-.-
T Consensus 15 ~~~~~l~~li~aGvdv~RlN~SHg~~------~------------~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD 76 (246)
T d1e0ta2 15 ESEEMLAKMLDAGMNVMRLNFSHGDY------A------------EHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKD 76 (246)
T ss_dssp CSHHHHHHHHHHTEEEEEEETTSSCH------H------------HHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHH
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCH------H------------HHHHHHHHHHHHHHHcCCCCcccccccccccccCc
Confidence 34688999999999999998655442 1 123556777777777788877765443 4333222
Q ss_pred HHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeE---EEeCCCChHHHHHHHHHhCCceEEEEecCCc-cCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELV---LFTTPTTPTDRMKAIVEASEGFVYLVSSIGV-TGAR 231 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I---~lisp~t~~eri~~i~~~a~gfiY~vs~~G~-TG~~ 231 (311)
.+.++.+.+.|+|-+-+.=.- .++..++++.++++|-..+ .=+--...-+.+.+|.+.++|....-.-.|+ .+-
T Consensus 77 ~~~i~~a~~~~vD~ialSFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~sDgImIaRGDLg~ei~~- 155 (246)
T d1e0ta2 77 KQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPV- 155 (246)
T ss_dssp HHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCH-
T ss_pred chhhhHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHHhhcceEEEEccchhhhCCH-
Confidence 346667889999998775322 2456778888888764333 3232222236688888888886433211111 000
Q ss_pred CCCCchHHHHHHHHhhcCCCcEEEeeCCC---------CH---HHHHHHHHcCCcEEEEh--hHhhchhhhcCCchhHHH
Q 021527 232 ASISGHVQTLLREIKESSTKPVAVGFGIS---------KP---EHVQQVAGWGADGVIVG--SAMVKLLGEAQSPEEGLK 297 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs---------t~---e~v~~v~~~GADGvIVG--Saiv~~~~~~~~~~~~~~ 297 (311)
..++ .+++.+-+.....++|+++...+- |. .|+.....-|+||+..- ||+=+ -|.+.++
T Consensus 156 e~vp-~~Qk~ii~~~~~~~kpvi~ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmLs~ETa~G~------~P~~~v~ 228 (246)
T d1e0ta2 156 EEVI-FAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGK------YPLEAVS 228 (246)
T ss_dssp HHHH-HHHHHHHHHHHHHTCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEECCC------------CHHHHH
T ss_pred HHHH-HHHHHHHHHHHHhCCCEEEehhhhhhhhcCCCCchHHHHHHHHHHHhCCcEEEEccccccCC------CHHHHHH
Confidence 0111 122223333334589999987763 22 35555666799999874 33322 1344555
Q ss_pred HHHHHHHHHH
Q 021527 298 ELEKFAKSLK 307 (311)
Q Consensus 298 ~~~~~~~~l~ 307 (311)
.+...+++..
T Consensus 229 ~l~~i~~~~E 238 (246)
T d1e0ta2 229 IMATICERTD 238 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FAD-linked oxidoreductase family: Methylenetetrahydrofolate reductase domain: Methylenetetrahydrofolate reductase species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.14 Score=44.51 Aligned_cols=205 Identities=12% Similarity=0.101 Sum_probs=126.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+.+.+.++.|.+.+.|.+-+- | --|.-.+ ...++++++++++.++|++.---....-+..
T Consensus 18 ~~~l~~~~~~L~~~~p~~vsVT--~----~aggs~~-------------~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~ 78 (275)
T d1b5ta_ 18 EQTLWNSIDRLSSLKPKFVSVT--Y----GANSGER-------------DRTHSIIKGIKDRTGLEAAPHLTCIDATPDE 78 (275)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEC--C----CSSHHHH-------------HHHHHHHHHHHHHHCCCEEEEECSTTCCHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEec--c----CCCCcch-------------hhHHHHHHHHHhhcCCCceeeeccccccHhH
Confidence 3556777888888889999884 1 1121111 2446688888887777766543221222335
Q ss_pred HHHHHHHHHHcCCcEEEe--cCCCh------hhHHHHHHHHHHcCCCeEEE-eC----CCCh--HHHHHHHH-HhCCceE
Q 021527 156 VDNFMSTVRDIGIRGLVV--PDVPL------EETESLQKEAMKNKIELVLF-TT----PTTP--TDRMKAIV-EASEGFV 219 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvii--pDlp~------ee~~~~~~~~~~~gi~~I~l-is----p~t~--~eri~~i~-~~a~gfi 219 (311)
++..+..+.+.|++-+++ .|.|. ....++...++..+-..+-+ .. |..+ +..++.+. +...|.-
T Consensus 79 l~~~l~~~~~~GI~niL~l~GD~~~~~~~~~~~a~dlv~li~~~~~~~igva~~Peghp~~~~~~~~~~~lk~K~~aGA~ 158 (275)
T d1b5ta_ 79 LRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGAN 158 (275)
T ss_dssp HHHHHHHHHHTTCCEEEECCCCCCSSSCCCCCCHHHHHHHHHHHCCCEEEEEECTTCCTTCSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhCeEEEecCCCCCCCCCCcccHHHHHHHHHHHHhcCCceeecCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 577888999999999887 35442 11555667777776544432 22 3332 22222221 1223444
Q ss_pred EEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEee-CCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchh--
Q 021527 220 YLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGF-GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEE-- 294 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGf-GIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~-- 294 (311)
|++|-. -++ ..+.++++++++. .++||++|. ++.+..++..+.+. -||-|...+.+.+++..+..+
T Consensus 159 fiiTQ~-------~fD~~~~~~~~~~~~~~gi~~Pi~~GI~p~~s~~~l~~~~~~--~Gv~iP~~~~~~~~~~~~~~~~~ 229 (275)
T d1b5ta_ 159 RAITQF-------FFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADM--TNVRIPAWMAQMFDGLDDDAETR 229 (275)
T ss_dssp EEEEEE-------CSCHHHHHHHHHHHHHTTCCSCEEEEECCCSCHHHHHHHHHT--TTCCCCHHHHHHHTTCTTCHHHH
T ss_pred eeeeee-------eecHHHHHHHHHHHHHcCCCCcccccccchHHHHHHHHHHHH--cCCcccHHHHHHHhhcCCCHHHH
Confidence 554322 233 4578899999886 589999996 66888998888765 589999999999976543222
Q ss_pred ---HHHHHHHHHHHHHh
Q 021527 295 ---GLKELEKFAKSLKS 308 (311)
Q Consensus 295 ---~~~~~~~~~~~l~~ 308 (311)
+++-..+++++|++
T Consensus 230 ~~~gi~~a~e~~~~L~~ 246 (275)
T d1b5ta_ 230 KLVGANIAMDMVKILSR 246 (275)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445566777654
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.61 E-value=0.015 Score=53.53 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=81.8
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCe------------EEEeCCCC-h
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIEL------------VLFTTPTT-P 204 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~------------I~lisp~t-~ 204 (311)
+++||+- +-+..+ +..++...+.+.|.=|+|--..++|+..+....++++.-.. -.-+.+.. .
T Consensus 45 l~iPIIs-ApMdtV---t~~~mA~als~~GGLGvLhr~~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~ 120 (378)
T d1jr1a1 45 LKTPLVS-SPMDTV---TEAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDD 120 (378)
T ss_dssp ESSCEEE-CCCTTT---CSHHHHHHHHHHTCEEEECCSSCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHH
T ss_pred CCCCEEE-CCCCCc---CCHHHHHHHHHCCCeeEEcCCCCHHHHHHHHheehhhhhCcccccccccCEEEEEEeccCHHH
Confidence 5678766 222222 34678889999999998877777777655555555442211 11122221 2
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.++.+...+..-.++.+... . +....+.+.++.+|+.. ++|+ +.++|.|++.+..+.++|||+|.||
T Consensus 121 ~~~~~~l~~agv~vi~id~a---~----g~~~~~~~~i~~ik~~~~~~~i-IaGnVaT~e~a~~L~~aGAD~VkVG 188 (378)
T d1jr1a1 121 KYRLDLLALAGVDVVVLDSS---Q----GNSIFQINMIKYMKEKYPNLQV-IGGNVVTAAQAKNLIDAGVDALRVG 188 (378)
T ss_dssp HHHHHHHHHHTCCEEEECCS---S----CCSHHHHHHHHHHHHHSTTCEE-EEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhhccceEeeecc---C----ccchhhHHHHHHHHHHCCCCce-eecccccHHHHHHHHHhCCCEEeec
Confidence 34555554444444332221 1 22345667888888865 6777 6778999999999999999999998
|
| >d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Thermotoga maritima [TaxId: 2336]
Probab=96.60 E-value=0.01 Score=49.93 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
+..+.++.+ ..+|++.+|.|+- ..|+ +.++++++ .+.+|++.--+.++-.+ ..
T Consensus 11 ~~~~~~~~~--~~~~~vKvG~~l~---~~G~--------------------~~i~~l~~-~~~~IflDlK~~DIpnT-v~ 63 (198)
T d1vqta1 11 DPIRFIDEN--GSFEVVKVGHNLA---IHGK--------------------KIFDELAK-RNLKIILDLKFCDIPST-VE 63 (198)
T ss_dssp SHHHHHHHH--CCCSEEEECHHHH---TTCT--------------------HHHHHHHT-TTCEEEEEEEECSCHHH-HH
T ss_pred hHHHHHHHc--CCCCEEEECHHHH---hccH--------------------HHHHHHHH-CCCcEEEEehhcCccHH-HH
Confidence 345556653 5699999996661 2342 36677765 37788887655444222 13
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC-----h---HHHHHHHHHhCCceEEEEecCCccC
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT-----P---TDRMKAIVEASEGFVYLVSSIGVTG 229 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t-----~---~eri~~i~~~a~gfiY~vs~~G~TG 229 (311)
+-++.+.+.|+|.+.++-+.-.+ .+....+..+.. ++.++--| . .+|+.++++.+.+++ ++ |
T Consensus 64 ~~v~~~~~~g~d~itvH~~~G~~--~l~~a~~~~~~~-~l~Vt~LtS~~~~~~~~~~~~~~l~~~g~~~v--v~-----~ 133 (198)
T d1vqta1 64 RSIKSWDHPAIIGFTVHSCAGYE--SVERALSATDKH-VFVVVKLTSMEGSLEDYMDRIEKLNKLGCDFV--LP-----G 133 (198)
T ss_dssp HHHHHHCCTTEEEEEEEGGGCHH--HHHHHHHHCSSE-EEEECCCTTSCCCHHHHHHHHHHHHHHTCEEE--CC-----H
T ss_pred HHHHHHhhccccEEEEEccCchh--hhhHhhhhcccc-ceeEEEeeccccchHHHHHHHHHHHHhccCcc--cc-----c
Confidence 45666778899999987554222 233334444433 33332222 1 245555555433321 11 1
Q ss_pred CCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHH---------HHHHcCCcEEEEhhHhhc
Q 021527 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQ---------QVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~---------~v~~~GADGvIVGSaiv~ 284 (311)
.....+++.....+++ =||+ ++.-. +....|||-+|||-.|++
T Consensus 134 ----------~~~~~~~~~~~~~iit-PGIr-~~~~~dDQkr~~t~~ai~~GAd~iVVGR~It~ 185 (198)
T d1vqta1 134 ----------PWAKALREKIKGKILV-PGIR-MEVKADDQKDVVTLEEMKGIANFAVLGREIYL 185 (198)
T ss_dssp ----------HHHHHHTTTCCSCEEE-CCBC----------CCBCHHHHTTTCSEEEESHHHHT
T ss_pred ----------chhhhhhhhccccccc-cccc-cCCCCCCcccccCHHHHHcCCCEEEECCcccC
Confidence 1233455554333332 4553 22110 234679999999999998
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.15 Score=44.25 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=102.6
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|++.+-++--.++ + .-.|.++-.++++.+.+. -++|++.-+..+
T Consensus 23 g~iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE----~------------~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~ 86 (296)
T d1xxxa1 23 GSLDTATAARLANHLVDQGCDGLVVSGTTGE----S------------PTTTDGEKIELLRAVLEAVGDRARVIAGAGTY 86 (296)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESSTTTT----T------------TTSCHHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECeeccc----h------------hhCCHHHHHHHHHHHHHHhccccceEeccccc
Confidence 3455688999999999999999988622211 1 113555555566555443 458888765544
Q ss_pred chhccCHHHHHHHHHHcCCcEEEe--cC---CChhhHHHH-HHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVV--PD---VPLEETESL-QKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGvii--pD---lp~ee~~~~-~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-++.+.+.+.|+|++++ |- ...++..++ ...+...++..+++=.| ..+.+-++++++ -..+
T Consensus 87 s~~--~~i~~a~~a~~~Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L~~-~p~i 163 (296)
T d1xxxa1 87 DTA--HSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALAS-HPNI 163 (296)
T ss_dssp CHH--HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHHHHHHT-STTE
T ss_pred hhH--HHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCHHHHHHhcC-CCCe
Confidence 322 2246788899999999877 31 223455554 44455556665554233 234566666654 3556
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+++=.. + .++....+.++. ..+.+-+|-. +..-.....|++|.+-|.+
T Consensus 164 ~giK~~---s-------~d~~~~~~~~~~---~~~~~~~g~~--~~~~~~~~~G~~G~is~~~ 211 (296)
T d1xxxa1 164 VGVKDA---K-------ADLHSGAQIMAD---TGLAYYSGDD--ALNLPWLAMGATGFISVIA 211 (296)
T ss_dssp EEEEEC---S-------CCHHHHHHHHHH---HCCEEEECSG--GGHHHHHHHTCCEEEESTH
T ss_pred eeeccc---c-------ccHHHHHhhhcc---cccccccCcc--cccchhhhcccccccchhc
Confidence 555221 1 123343433332 2233334432 3556677789999999976
|
| >d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.014 Score=50.98 Aligned_cols=122 Identities=17% Similarity=0.253 Sum_probs=72.5
Q ss_pred HHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHHH------------HHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDRM------------KAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~eri------------~~i~~~---- 214 (311)
..+.+++.|++.+|+..- ..+....=...+.++|+.+|+-+.-+. ++|- +.+...
T Consensus 79 Sa~mlkd~G~~~viiGHSERR~~~~E~~~~i~~K~~~al~~~l~pIlCvGE~~-~~r~~~~~~~~~~~Ql~~~~~~~~~~ 157 (255)
T d1trea_ 79 SAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETE-AENEAGKTEEVCARQIDAVLKTQGAA 157 (255)
T ss_dssp CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCH-HHHHTTCHHHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHhccchhhhccccccccccccCHHHHHHHHHHHhhheeeEEecccch-hhhcchhhhhhhhhhhhhhhcccchh
Confidence 456788899999998631 011122334667788999888776542 2221 222111
Q ss_pred --CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhh
Q 021527 215 --SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQVAG-WGADGVIVGS 280 (311)
Q Consensus 215 --a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGS 280 (311)
..-.|-|.+ ..| ||.. ..+.+..+....+|+. -++||+.|++|+ ++++.+++. -+.||+-||+
T Consensus 158 ~~~~iiIAYEPvWAIG-tG~~-a~~~~~~~~~~~ir~~l~~~~~~~~~~v~iLYGGSV~-~~N~~~i~~~~~vdG~LVGg 234 (255)
T d1trea_ 158 AFEGAVIAYEPVWAIG-TGKS-ATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVN-ASNAAELFAQPDIDGALVGG 234 (255)
T ss_dssp GGTTCEEEECCGGGSS-SSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCC-TTTHHHHHTSTTCCEEEESG
T ss_pred hccCcEEEecchhhcc-cccc-cCcchhhhhHHHHHHHHhhhchhhcCCccEEecCCcC-HhHHHHHhcCCCCCEEEech
Confidence 112344432 233 5542 2233344444444442 258999999997 699998874 4689999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
|-.+
T Consensus 235 ASl~ 238 (255)
T d1trea_ 235 ASLK 238 (255)
T ss_dssp GGGC
T ss_pred hhcC
Confidence 9887
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.56 E-value=0.12 Score=45.07 Aligned_cols=213 Identities=16% Similarity=0.251 Sum_probs=118.5
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
.|++.|+.|+| |..+|+=|. ..++.++++|+|+|-+| |.+ |-+++--. --..+++++.+...+
T Consensus 8 ~l~~~K~~g~k--i~~lTaYD~------~~A~~~~~agiDiiLVG----DSl--gmv~~G~~---~T~~Vt~d~m~~H~~ 70 (262)
T d1oy0a_ 8 HLQRWKADGHK--WAMLTAYDY------STARIFDEAGIPVLLVG----DSA--ANVVYGYD---TTVPISIDELIPLVR 70 (262)
T ss_dssp HHHHHHHHTCC--EEEEECCSH------HHHHHHHTTTCCEEEEC----TTH--HHHTTCCS---SSSSCCGGGTHHHHH
T ss_pred HHHHHHhCCCc--EEEEeCCCH------HHHHHHHHcCCCEEEEc----Cch--hhhhcCCC---CcceeeHHHHHHHHH
Confidence 45556667776 446676664 68889999999999998 211 22211000 002367888888888
Q ss_pred HhhccCCCcEEEEe-cCcchhccCHHHH----HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE--eCCCCh-
Q 021527 133 EVVPQMSCPIALFT-YYNPILKRGVDNF----MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF--TTPTTP- 204 (311)
Q Consensus 133 ~ir~~~~iPiilm~-Y~n~i~~~g~~~f----i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l--isp~t~- 204 (311)
.+++..+-++++-. -|+. |..+.++- .+.++++|+|++-+--- .+..+..+.+.+.||.+.-- ++|.+.
T Consensus 71 aV~rga~~~~iv~DmPf~s-~~~s~~~a~~nA~r~~~~~ga~avkleg~--~~~~~~I~~L~~~gIPV~gHiGLtPQ~~~ 147 (262)
T d1oy0a_ 71 GVVRGAPHALVVADLPFGS-YEAGPTAALAAATRFLKDGGAHAVKLEGG--ERVAEQIACLTAAGIPVMAHIGFTPQSVN 147 (262)
T ss_dssp HHHHHCTTSEEEEECCTTS-STTCHHHHHHHHHHHHHTTCCSEEEEEBS--GGGHHHHHHHHHHTCCEEEEEECCC----
T ss_pred HHHhccccceeEecchhhh-cccchHHHHHHHHHHHhccccceeeechh--hhhHHHHHHHHhcCCceEEeeeecceeee
Confidence 88876555554421 1111 11123333 34567899999977522 35566777788889987643 345432
Q ss_pred -----------HHHH------HHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHH
Q 021527 205 -----------TDRM------KAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQ 267 (311)
Q Consensus 205 -----------~eri------~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~ 267 (311)
++.. +.+ +.+.-|..++. .+|. +.-+++.+.+++|+ +|.|=..
T Consensus 148 ~~Gg~r~~Gk~~~~~~l~~da~~l-e~AGa~~ivlE---------~Vp~---~la~~It~~~~IPt-IGIGAG~------ 207 (262)
T d1oy0a_ 148 TLGGFRVQGRGDAAEQTIADAIAV-AEAGAFAVVME---------MVPA---ELATQITGKLTIPT-VGIGAGP------ 207 (262)
T ss_dssp ----------CHHHHHHHHHHHHH-HHHTCSEEEEE---------SCCH---HHHHHHHHHCSSCE-EEESSCS------
T ss_pred ecCccceeccchhhhHhHHHHHHH-HhCCcEEEecc---------cccH---hHHHHHHhhCCceE-EEeccCC------
Confidence 1111 111 12333433322 2243 55667888899999 4777653
Q ss_pred HHHcCCcEEEEhh-Hhhchhhhc--------CC-chhHHHHHHHHHHHHHhh
Q 021527 268 VAGWGADGVIVGS-AMVKLLGEA--------QS-PEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 268 v~~~GADGvIVGS-aiv~~~~~~--------~~-~~~~~~~~~~~~~~l~~~ 309 (311)
++||=|.=+ -+.-.-.+. .+ .++..+.+++|.++.+..
T Consensus 208 ----~cDGQvLV~~DiLG~~~~~~Pkf~K~y~~~~~~~~~A~~~y~~~V~~g 255 (262)
T d1oy0a_ 208 ----NCDGQVLVWQDMAGFSGAKTARFVKRYADVGGELRRAAMQYAQEVAGG 255 (262)
T ss_dssp ----CSSEEEECHHHHTTCSCSCCCTTCCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ----CCCeeEEeHHhhhCCCCCCCCchHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 478876532 222211110 01 234567788898888764
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.075 Score=46.20 Aligned_cols=176 Identities=14% Similarity=0.152 Sum_probs=103.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|++.|-++--.+ ++ .-.+.++..++++.+.+. -++|+++-+..+
T Consensus 18 g~iD~~~l~~~i~~l~~~Gv~gi~~~G~tG----E~------------~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~ 81 (295)
T d1hl2a_ 18 QALDKASLRRLVQFNIQQGIDGLYVGGSTG----EA------------FVQSLSEREQVLEIVAEEAKGKIKLIAHVGCV 81 (295)
T ss_dssp SSBCHHHHHHHHHHHHHHTCSEEEESSGGG----TG------------GGSCHHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECeEcc----ch------------hhCCHHHHHHHHhhhHHhhccccceeeccccc
Confidence 556778999999999999999999851111 11 114666666677666543 468888765544
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecC-----CChhhHHH-HHHHHHHc-CCCeEEEeCC-----CChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEETES-LQKEAMKN-KIELVLFTTP-----TTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee~~~-~~~~~~~~-gi~~I~lisp-----~t~~eri~~i~~~a~g 217 (311)
... ..-+.++.++++|+|++++.- ...++..+ |.+.+... ++..++.-.| ..+.+-+.++++ -..
T Consensus 82 s~~--~~i~~a~~a~~~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~-~pn 158 (295)
T d1hl2a_ 82 STA--ESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVT-LPG 158 (295)
T ss_dssp SHH--HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHT-STT
T ss_pred hhh--HHHHHHHHHHhcCCceeeeeeccccCCChHHHHHHHHHHhcccCcCccccccccccccccccccccccccc-Ccc
Confidence 321 234677889999999998831 22345443 55666655 4455544322 234566666654 456
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+=.. +| ++. .+.+++.. .+.-++.|.+ +.+-..+..|++|++.|++
T Consensus 159 vvgiK~~---~~-------~~~-~~~~~~~~~~~~~v~~g~~----~~~~~~~~~G~~G~is~~~ 208 (295)
T d1hl2a_ 159 VGALKQT---SG-------DLY-QMEQIRREHPDLVLYNGYD----EIFASGLLAGADGGIGSTY 208 (295)
T ss_dssp EEEEEEC---CC-------CHH-HHHHHHHHCTTCEEEECCG----GGHHHHHHHTCCEEEETTH
T ss_pred hhhhccc---cc-------cHH-HHHHHhhcCCCceEecccH----HHHhhhhccCCCceeccch
Confidence 6655221 11 122 23444443 3444443332 3455566789999999975
|
| >d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FAD-linked oxidoreductase family: Methylenetetrahydrofolate reductase domain: Methylenetetrahydrofolate reductase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.026 Score=49.51 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=113.6
Q ss_pred HHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 57 LKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 57 ~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
++++-..-.|+++++-+=+.....+++..+.+.|++-|-+ |=|.+. .+.|. ...-+..+++++.
T Consensus 57 l~~~~g~~~i~Hlt~r~~n~~~l~~~l~~~~~~GI~niL~l~GD~~~~--~~~~~------------~~a~dlv~li~~~ 122 (275)
T d1b5ta_ 57 IKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPG--SGKPE------------MYASDLVTLLKEV 122 (275)
T ss_dssp HHHHHCCCEEEEECSTTCCHHHHHHHHHHHHHTTCCEEEECCCCCCSS--SCCCC------------CCHHHHHHHHHHH
T ss_pred HHhhcCCCceeeeccccccHhHHHHHHHHHHHHhhCeEEEecCCCCCC--CCCCc------------ccHHHHHHHHHHH
Confidence 3333246689999999988999999999999999999887 422211 11121 1222344455444
Q ss_pred hccCCCcEEEEecC--cchhccCHHHHHH---HHHHcCCcEEEe-cCCChhhHHHHHHHHHHcCC--CeEEEeCCCChHH
Q 021527 135 VPQMSCPIALFTYY--NPILKRGVDNFMS---TVRDIGIRGLVV-PDVPLEETESLQKEAMKNKI--ELVLFTTPTTPTD 206 (311)
Q Consensus 135 r~~~~iPiilm~Y~--n~i~~~g~~~fi~---~~~~aGadGvii-pDlp~ee~~~~~~~~~~~gi--~~I~lisp~t~~e 206 (311)
....+.+-+|- +|-. ...+.-++ .=.++|++.++- +=...+...+|.+.+++.|+ ..++.+.|-++..
T Consensus 123 ---~~~~igva~~Peghp~~-~~~~~~~~~lk~K~~aGA~fiiTQ~~fD~~~~~~~~~~~~~~gi~~Pi~~GI~p~~s~~ 198 (275)
T d1b5ta_ 123 ---ADFDISVAAYPEVHPEA-KSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFK 198 (275)
T ss_dssp ---CCCEEEEEECTTCCTTC-SCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHHTTCCSCEEEEECCCSCHH
T ss_pred ---HhcCCceeecCCCCccc-hhHHHHHHHHHHHHHhhcCeeeeeeeecHHHHHHHHHHHHHcCCCCcccccccchHHHH
Confidence 34567777774 3322 12232233 334689997654 23344678889999999998 4666778888777
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcE---EEeeCCCCHHHHHHHHHcCCcEE
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPV---AVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv---~vGfGIst~e~v~~v~~~GADGv 276 (311)
++..+++ ..|. .+|. ++++++.+..+-+- .+|.-+. .++++++.+.|++|+
T Consensus 199 ~l~~~~~-------------~~Gv--~iP~---~~~~~~~~~~~~~~~~~~~gi~~a-~e~~~~L~~~gv~Gi 252 (275)
T d1b5ta_ 199 QAKKFAD-------------MTNV--RIPA---WMAQMFDGLDDDAETRKLVGANIA-MDMVKILSREGVKDF 252 (275)
T ss_dssp HHHHHHH-------------TTTC--CCCH---HHHHHHTTCTTCHHHHHHHHHHHH-HHHHHHHHHTTCCEE
T ss_pred HHHHHHH-------------HcCC--cccH---HHHHHHhhcCCCHHHHHHHHHHHH-HHHHHHHHHCCCCEE
Confidence 7776654 1222 3454 45666655433221 1243443 488999999999998
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=96.36 E-value=0.27 Score=42.63 Aligned_cols=208 Identities=14% Similarity=0.239 Sum_probs=118.3
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAILS 129 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~~~ 129 (311)
+.+.|++|+| |..+|+=|+ ..++.++++|+|+|-+| |.+ |-+ .+. ..+++++.+.
T Consensus 7 L~~~K~~g~k--i~~lTayd~------~~A~~ae~agiDiilVG----DSl--gm~-------~~G~~~T~~vt~d~mi~ 65 (260)
T d1o66a_ 7 LQKMKAAGEK--IAMLTAYES------SFAALMDDAGVEMLLVG----DSL--GMA-------VQGRKSTLPVSLRDMCY 65 (260)
T ss_dssp HHHHHHHTCC--EEEEECCSH------HHHHHHHHTTCCEEEEC----TTH--HHH-------TTCCSSSTTCCHHHHHH
T ss_pred HHHHHhCCCc--EEEEeCCCH------HHHHHHHHcCCCEEEEc----CCc--hhe-------ecCCCCccccchhhhhh
Confidence 4455666666 345666453 78888999999999998 211 111 111 2368888888
Q ss_pred HHHHhhccCCCcEEEEec-CcchhccCHHHHH---HHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe--CCCC
Q 021527 130 MLKEVVPQMSCPIALFTY-YNPILKRGVDNFM---STVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT--TPTT 203 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y-~n~i~~~g~~~fi---~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li--sp~t 203 (311)
..+.+|+..+-++++-.. ++ -|....+... ..+.++|+|++-+.-- .+..+..+.+.+.||.++--+ .|.+
T Consensus 66 h~~aV~rga~~~~~i~dmPf~-sy~~~~~~~~~a~~~~~~~gadavk~eg~--~~~~~~i~~l~~~gIPV~gHiGl~Pq~ 142 (260)
T d1o66a_ 66 HTECVARGAKNAMIVSDLPFG-AYQQSKEQAFAAAAELMAAGAHMVKLEGG--VWMAETTEFLQMRGIPVCAHIGLTPQS 142 (260)
T ss_dssp HHHHHHHHCSSSEEEEECCTT-SSSSCHHHHHHHHHHHHHTTCSEEEEECS--GGGHHHHHHHHHTTCCEEEEEESCGGG
T ss_pred hhHHHHccCcceeeecchhhh-hhcchhHHHHHHHHHHHHhhhhhccccch--hhhhHHHHHHHHcCCeeEeecccccch
Confidence 889998765555444311 11 1122333333 3467789999988622 355567778888999877432 3332
Q ss_pred h------------HHHHHHHHH------hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHH
Q 021527 204 P------------TDRMKAIVE------ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHV 265 (311)
Q Consensus 204 ~------------~eri~~i~~------~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v 265 (311)
. .+.. ++.+ .+.-|..++. .+|. +.-+++.+.+++|+ +|.|=..
T Consensus 143 ~~~~gG~r~~Gk~~e~~-~l~~~a~~le~AGa~~ivlE---------~Vp~---~va~~It~~~~ipt-IgIGaG~---- 204 (260)
T d1o66a_ 143 VFAFGGYKVQGRGGKAQ-ALLNDAKAHDDAGAAVVLME---------CVLA---ELAKKVTETVSCPT-IGIGAGA---- 204 (260)
T ss_dssp TTC-----------CHH-HHHHHHHHHHHTTCSEEEEE---------SCCH---HHHHHHHHHCSSCE-EEESSCS----
T ss_pred heecCcceeccccchhH-HHHHHHHHHHHhhhhehhhh---------hccH---HHHHHHHhhhccee-eeccCCC----
Confidence 1 1111 1212 2333433332 2243 45667778899999 4777653
Q ss_pred HHHHHcCCcEEEEhhH-hhchhhhc---------CCchhHHHHHHHHHHHHHhh
Q 021527 266 QQVAGWGADGVIVGSA-MVKLLGEA---------QSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 266 ~~v~~~GADGvIVGSa-iv~~~~~~---------~~~~~~~~~~~~~~~~l~~~ 309 (311)
++||-+.=+. +.-...+. +..++..+.+++|.++.+..
T Consensus 205 ------~cDGQvLv~~DllG~~~~~~Pkf~k~y~n~~~~~~~A~~~y~~dV~~g 252 (260)
T d1o66a_ 205 ------DCDGQVLVMHDMLGIFPGKTAKFVKNFMQGHDSVQAAVRAYVAEVKAK 252 (260)
T ss_dssp ------CSSEEEECHHHHTTCSSSSCCTTCCCSSTTCSSHHHHHHHHHHHHHHT
T ss_pred ------CCCeeEEehHHhhCCCCCCCCChHHHHHhHHHHHHHHHHHHHHHHHcC
Confidence 3788775432 11111110 11245578889999988764
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=96.32 E-value=0.047 Score=46.22 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=24.5
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
++.|=+.+||+|.+++.+++++||+= +||
T Consensus 175 ~~~iKasGGIrt~~~a~~~l~aGa~r--iGt 203 (211)
T d1ub3a_ 175 RAQVKAAGGIRDRETALRMLKAGASR--LGT 203 (211)
T ss_dssp SSEEEEESSCCSHHHHHHHHHTTCSE--EEE
T ss_pred CceEECcCCCCCHHHHHHHHHHhhhH--hcc
Confidence 36677889999999999999999983 464
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.29 E-value=0.061 Score=47.01 Aligned_cols=169 Identities=19% Similarity=0.261 Sum_probs=95.4
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
+.+.+..++.++.|.+.|||+|.+|-..+-|-++-...+ ..++-+...++.+++. +++|=+-+|.
T Consensus 21 ~~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~----------eE~~Rl~p~i~~~~~~-~~~iSIDT~~---- 85 (270)
T d1eyea_ 21 YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPA----------VETSRVIPVVKELAAQ-GITVSIDTMR---- 85 (270)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECC------------------------HHHHHHHHHHHHHT-TCCEEEECSC----
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEeeech----------hhcccccceeeeeccc-ceeechHhhh----
Confidence 346688999999999999999999999999866531111 2233445566666553 6678888874
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCCCeEEEeCCC----Ch---------H--------HHHHH
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKIELVLFTTPT----TP---------T--------DRMKA 210 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi~~I~lisp~----t~---------~--------eri~~ 210 (311)
.+-++.|.++|+|- +.|+. ...-.++.+.+.+++...|++-+.. +. . ++++.
T Consensus 86 ----~~Va~~al~~Ga~i--INDvsg~~~d~~m~~~~a~~~~~~vlmh~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (270)
T d1eyea_ 86 ----ADVARAALQNGAQM--VNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVAD 159 (270)
T ss_dssp ----HHHHHHHHHTTCCE--EEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhcCCeE--EEeccccccchhHHhhhhhcccceeeeeccccccccccccccccchhhhhhhHHHHHHHH
Confidence 24567888999985 55553 2222345667788888777654221 10 0 12222
Q ss_pred HHHhCCce----EEEEecCCccCCCCCCCchHHHHHHHHhh--cCCCcEEEeeCCCCHHHHHHHHH
Q 021527 211 IVEASEGF----VYLVSSIGVTGARASISGHVQTLLREIKE--SSTKPVAVGFGISKPEHVQQVAG 270 (311)
Q Consensus 211 i~~~a~gf----iY~vs~~G~TG~~~~~~~~~~~~l~~vk~--~~~~Pv~vGfGIst~e~v~~v~~ 270 (311)
.. +.|+ +.+-...|. | + ....-.++++++.+ ..+.|+++|. |...=+.+++.
T Consensus 160 ~~--~~Gi~~~~IilDPGiGF-g-K--t~~~n~~lL~~l~~~~~~g~PiLvG~--SRKsfig~~~~ 217 (270)
T d1eyea_ 160 AV--AAGVDPARLVLDPGLGF-A-K--TAQHNWAILHALPELVATGIPVLVGA--SRKRFLGALLA 217 (270)
T ss_dssp HH--HTTCCGGGEEEECCTTS-S-C--CHHHHHHHHHTHHHHHTTSSCBEECC--TTCHHHHHHTC
T ss_pred HH--hccccceEEEEcccccc-C-c--ccchHHHHHHHHHhhccCCCceEEee--hhhHHHHHHhc
Confidence 21 2343 666665553 2 1 12223456666654 3589999864 55566666653
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.24 E-value=0.1 Score=45.11 Aligned_cols=119 Identities=13% Similarity=0.235 Sum_probs=76.6
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
.+|..+ ++..|.++.+++++.++..++.|+|.+.+.-||--+ .+-+++.+..++|.+.++
T Consensus 68 ~~~~~v--i~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP~y~~------------------~s~~~i~~~~~~ia~a~~ 127 (295)
T d1o5ka_ 68 DGKIPV--IVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNK------------------PTQEGLYQHYKYISERTD 127 (295)
T ss_dssp TTSSCE--EEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSC------------------CCHHHHHHHHHHHHTTCS
T ss_pred ccCCce--EeecccccHHHHHHHHHHHHHcCCCEEEEeCCCCCC------------------CCHHHHHHHHHHHHhccC
Confidence 344444 557789999999999999999999999999887432 233456778888888899
Q ss_pred CcEEEEecCcchh---ccCHHHHHHHHHHcC-CcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC
Q 021527 140 CPIALFTYYNPIL---KRGVDNFMSTVRDIG-IRGLVVPDVPLEETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 140 iPiilm~Y~n~i~---~~g~~~fi~~~~~aG-adGviipDlp~ee~~~~~~~~~~~gi~~I~lis 200 (311)
+|+++ |.+|.. ....+.+.+.+.+.. +-|+-...-..+.........+..+-....+..
T Consensus 128 ~pi~i--Yn~P~~~g~~~~~~~~~~l~~~~~ni~~iK~~~~~~~~~~~~~~~~~~~~~~~~v~~g 190 (295)
T d1o5ka_ 128 LGIVV--YNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRTVSLTKQARSDFMVWSG 190 (295)
T ss_dssp SCEEE--EECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCCCHHHHHHHHHHHHHHCTTCEEEES
T ss_pred CCeeE--EeccchhcccchhHHHHHHHhhcccccceecCCcchhhhhhHHHHhhhcCCcceeccc
Confidence 99887 655532 233455555555433 455544433334445555555554544444443
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=96.17 E-value=0.014 Score=53.48 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 238 VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..++.+.+|+.++.||++.+|++ ++++.++++.| +|.|-+|-.++.
T Consensus 295 ~~~~~~~ik~~~~~pv~~~Gg~~-~~~ae~~l~~G~~DlV~~gR~lia 341 (380)
T d1q45a_ 295 EAKLMKSLRMAYNGTFMSSGGFN-KELGMQAVQQGDADLVSYGRLFIA 341 (380)
T ss_dssp HHHHHHHHHHHSCSCEEEESSCC-HHHHHHHHHTTSCSEEEESHHHHH
T ss_pred hHHHHHHHhhccCCcEEeCCCCC-HHHHHHHHHcCCccchhhhHHHHH
Confidence 34567888999999999999995 89999998876 999999988774
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.06 E-value=0.23 Score=42.88 Aligned_cols=172 Identities=16% Similarity=0.103 Sum_probs=99.5
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
|.-|.+.+.+.++.|.+.|++.|-++--.. ++ .-.+.++-.++++...+. ..|++...-.+..
T Consensus 15 g~iD~~~~~~~i~~l~~~Gv~gi~~~GttG----E~------------~~Ls~~Er~~~~~~~~~~-~~~~i~gv~~~st 77 (293)
T d1w3ia_ 15 NRIDKEKLKIHAENLIRKGIDKLFVNGTTG----LG------------PSLSPEEKLENLKAVYDV-TNKIIFQVGGLNL 77 (293)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTTT----TG------------GGSCHHHHHHHHHHHHTT-CSCEEEECCCSCH
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEECeech----hh------------hhCCHHHHHHHHHHHHhh-ccccccccccchh
Confidence 556778999999999999999999862221 11 114666667777776654 4465554332211
Q ss_pred hccCHHHHHHHHHHcCCcEEEe-cC-----CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCceE
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVV-PD-----VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGvii-pD-----lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gfi 219 (311)
....++.+.+.+.|+||+++ |- ...++..+ |...+...++..+++=.| ..+.+-++++ ..++
T Consensus 78 --~~~i~~a~~a~~~Ga~~~~~~~P~~~~~~~~~~i~~~f~~Ia~a~~~pi~lYn~P~~~g~~l~~~~~~~l----~ni~ 151 (293)
T d1w3ia_ 78 --DDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKEI----GCFT 151 (293)
T ss_dssp --HHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH----CCEE
T ss_pred --hhhhhhhhhhhhhccccccccccchhccchHHHHHHHHHHHHHhhccceeeeccccccccccchhhHHhh----hhhh
Confidence 12345677789999999875 32 12244544 555666678876665433 2333444333 3344
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+ +... .++. ...++++.. +..|+.|.+ +.+-....+|+||.+-|.+
T Consensus 152 gi---------K~ss-~d~~-~~~~~~~~~~~~~v~~G~d----~~~~~~~~~Ga~G~is~~~ 199 (293)
T d1w3ia_ 152 GV---------KDTI-ENII-HTLDYKRLNPNMLVYSGSD----MLIATVASTGLDGNVAAGS 199 (293)
T ss_dssp EE---------EECC-SCHH-HHHHHHHHCTTSEEEECCS----TTHHHHHHTTCCEEECGGG
T ss_pred cc---------cccc-ccHH-HHHHHHhhccceecccccc----cchhhhhccCCceeeeccc
Confidence 33 1111 1222 233444433 455655433 3466677799999999865
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.23 Score=42.85 Aligned_cols=180 Identities=16% Similarity=0.151 Sum_probs=103.8
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc--cCCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP--QMSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~--~~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.+-++--.+ +++. .+.++-.++++.+.+ .-++|+++-+-.+
T Consensus 17 ~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstG----E~~~------------Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~ 80 (292)
T d2a6na1 17 GNVCRASLKKLIDYHVASGTSAIVSVGTTG----ESAT------------LNHDEHADVVMMTLDLADGRIPVIAGTGAN 80 (292)
T ss_dssp SSBCHHHHHHHHHHHHHHTCCEEEESSTTT----TGGG------------SCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECeecc----chhh------------CCHHHHHHHhhhhhhhccccceeEeecccc
Confidence 455678999999999999999988852222 1221 345555556655544 3468888876444
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecC-----CChhhHHHH-HHHHHHcCCCeEEEeCCC-----ChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEETESL-QKEAMKNKIELVLFTTPT-----TPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee~~~~-~~~~~~~gi~~I~lisp~-----t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+.+.|+|++++.- .+.++..++ ...+...++..+++=.|. .+.+-++++++ -..+
T Consensus 81 s~~--~~i~~~~~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~-~pnv 157 (292)
T d2a6na1 81 ATA--EAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLAK-VKNI 157 (292)
T ss_dssp SHH--HHHHHHHTTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHHT-STTE
T ss_pred hHH--HHHHHhccHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHHHHHhc-CCCE
Confidence 221 123466677889999998731 223455554 555566677766553332 23466666654 3566
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+++=.. +|. . ....++++..+--+.+..|- .+..-.....|++|.+.|++-+
T Consensus 158 ~giK~~---~~~----~----~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~G~~G~i~~~~~~ 209 (292)
T d2a6na1 158 IGIKEA---TGN----L----TRVNQIKELVSDDFVLLSGD--DASALDFMQLGGHGVISVTANV 209 (292)
T ss_dssp EEEEEC---SCC----T----THHHHHHTTSCTTSEEEECC--GGGHHHHHHTTCCEEEESGGGT
T ss_pred EEEEec---cCc----c----hhhhhhhhhcCCccEEeecc--hhhhhhHhhCCceEEEeecchh
Confidence 655321 111 1 12333434332223333442 2445566668999999998654
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=95.91 E-value=0.023 Score=44.80 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCC
Q 021527 183 SLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGIS 260 (311)
Q Consensus 183 ~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIs 260 (311)
.+...++.+|.+.+.+-..+++++-++.+.+....+|.+-+..+ . -.+.+.+.++.+|+. .++||++|+++.
T Consensus 22 mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~---~---~~~~~~~~~~~l~~~~~~~i~iivGG~~~ 95 (137)
T d1ccwa_ 22 ILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYG---Q---GEIDCKGLRQKCDEAGLEGILLYVGGNIV 95 (137)
T ss_dssp HHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSS---T---HHHHHTTHHHHHHHTTCTTCEEEEEESCS
T ss_pred HHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccc---c---chHHHHHHHHHHHHhccCCCEEEEeCCcC
Confidence 34555677777755554333334444444443444443322221 1 123344566667664 379999999985
Q ss_pred C-----HHHHHHHHHcCCcEE
Q 021527 261 K-----PEHVQQVAGWGADGV 276 (311)
Q Consensus 261 t-----~e~v~~v~~~GADGv 276 (311)
+ ++...++.+.|+|++
T Consensus 96 ~~~~~~~~~~~~l~~~Gv~~i 116 (137)
T d1ccwa_ 96 VGKQHWPDVEKRFKDMGYDRV 116 (137)
T ss_dssp SSSCCHHHHHHHHHHTTCSEE
T ss_pred CCccccHHHHHHHHHcCCCEE
Confidence 4 556677888999987
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=95.90 E-value=0.12 Score=43.93 Aligned_cols=44 Identities=30% Similarity=0.325 Sum_probs=32.2
Q ss_pred HHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh-hHhhchhh
Q 021527 242 LREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVG-SAMVKLLG 287 (311)
Q Consensus 242 l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVG-Saiv~~~~ 287 (311)
++.+++.+ ++.|=+.+||+|.+++.+++++|||= +| |....+++
T Consensus 165 v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~R--iGtSs~~~i~~ 211 (225)
T d1mzha_ 165 VRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADR--IGTSSGISIAE 211 (225)
T ss_dssp HHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSE--EEESCHHHHHH
T ss_pred HHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhh--eecCcHHHHHH
Confidence 45555543 47888899999999999999999994 46 44444443
|
| >d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Leishmania mexicana [TaxId: 5665]
Probab=95.89 E-value=0.032 Score=48.36 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=72.4
Q ss_pred HHHHHHHcCCcEEEecCC------C--hhhHHHHHHHHHHcCCCeEEEeCCCChHHHH--------H-HHHHh---C---
Q 021527 159 FMSTVRDIGIRGLVVPDV------P--LEETESLQKEAMKNKIELVLFTTPTTPTDRM--------K-AIVEA---S--- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl------p--~ee~~~~~~~~~~~gi~~I~lisp~t~~eri--------~-~i~~~---a--- 215 (311)
-.+.+++.|++.+|+..- . .+....=...+.++|+.+|+-+.-+. ++|- . .+... -
T Consensus 78 Sa~mL~d~g~~yviiGHSERR~~~~Etd~~v~~K~~~al~~~l~pI~CiGE~~-~~~~~~~~~~~l~~ql~~~l~~~~~~ 156 (249)
T d1n55a_ 78 SMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETL-QQREANQTAKVVLSQTSAIAAKLTKD 156 (249)
T ss_dssp BHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCH-HHHHTTCHHHHHHHHHHHHHTTCCGG
T ss_pred cHHHHHHhccceeeeccchhhhhhcccHHHHHHHHHHHHHcCCceEEEecccc-cccccccceeeehhhhhhhhcccccc
Confidence 456678889999999631 0 11122224456778999888887543 2221 1 11111 1
Q ss_pred ---CceEEEEecCC-ccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhh
Q 021527 216 ---EGFVYLVSSIG-VTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVAG-WGADGVIVGS 280 (311)
Q Consensus 216 ---~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGS 280 (311)
.-.|-|.++-. .||.. ..+.+..+....+|+.. ++||+.|+.|+ ++++++++. -+.||+-||+
T Consensus 157 ~~~~iiIAYEPvWAIGtG~~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~-~~N~~~i~~~~~vdG~LVG~ 234 (249)
T d1n55a_ 157 AWNQVVLAYEPVWAIGTGKV-ATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVN-AANAATLYAKPDINGFLVGG 234 (249)
T ss_dssp GGGGEEEEECCGGGSSSSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCC-TTTHHHHHTSTTCCEEEESG
T ss_pred cccceEEEecceecccCCcc-cChHHHHHHHHHHHHHHHhhcchhhcCcccEEEcCCCC-HhHHHHHhcCCCCCeEEeeh
Confidence 11333332221 35543 22344555555555432 38999999997 699999884 4589999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
|=.+
T Consensus 235 ASl~ 238 (249)
T d1n55a_ 235 ASLK 238 (249)
T ss_dssp GGGS
T ss_pred hhcC
Confidence 8775
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.85 E-value=0.023 Score=50.91 Aligned_cols=68 Identities=21% Similarity=0.357 Sum_probs=50.9
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHH-HHHHHHHHHHHhh
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL-KELEKFAKSLKSA 309 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~-~~~~~~~~~l~~~ 309 (311)
+.+.+++...+.||++.+||++.-||.+.+-.|||.|=+|-.+...+... ..+++ +.++.+..+|+.+
T Consensus 265 ~~l~~i~~~~~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~--G~egv~~~l~~l~~El~~~ 333 (353)
T d1p4ca_ 265 EVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAAR--GETGVDEVLTLLKADIDRT 333 (353)
T ss_dssp GTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhcccccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHHHHhc--cHHHHHHHHHHHHHHHHHH
Confidence 34555556668999999999999999999999999999999999876432 12333 3455666667654
|
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.49 Score=40.68 Aligned_cols=184 Identities=11% Similarity=0.083 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...+.++.+.+.|+..+-+.-- .+|..+ ..++.+.++++.+++. ...+.+-.+ + . .
T Consensus 76 e~i~~~~~~~~~~G~~~~~~~~g-~~~~~~---------------~~~~~~~~~i~~~~~~-~~~~~~~~~--~---l-~ 132 (312)
T d1r30a_ 76 EQVLESARKAKAAGSTRFCMGAA-WKNPHE---------------RDMPYLEQMVQGVKAM-GLEACMTLG--T---L-S 132 (312)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEC-CSSCCT---------------TTHHHHHHHHHHHHHT-TSEEEEECS--S---C-C
T ss_pred HHHHHHHHHHHHcCCEEEEEccC-CCCCch---------------hhHHHHHHHHHhcccc-cceeeeccc--c---c-h
Confidence 56788889999999998877311 122222 2234555677666543 233333211 1 1 1
Q ss_pred HHHHHHHHHcCCcEEEec-------------CCChhhHHHHHHHHHHcCCCeE---EEeCCCChHHHHHHHHHhC-----
Q 021527 157 DNFMSTVRDIGIRGLVVP-------------DVPLEETESLQKEAMKNKIELV---LFTTPTTPTDRMKAIVEAS----- 215 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip-------------Dlp~ee~~~~~~~~~~~gi~~I---~lisp~t~~eri~~i~~~a----- 215 (311)
++.++.++++|++.+.+. ....++..+..+.+++.|+..- .+--+.+.+++++.+....
T Consensus 133 ~e~l~~lk~aG~~~i~~~iEs~~~~~~~~~~~~~~~~~~~~~~~a~~~Gi~~~~~~i~G~~et~~d~~~~l~~l~~l~~~ 212 (312)
T d1r30a_ 133 ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTP 212 (312)
T ss_dssp HHHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHhhcccceeEecccchhhhhhccCCCCCCHHHHHHHHHHHHHhccceecceEecCcCcHHHHHHHHHHHHhcCCC
Confidence 456788999999998763 2233555667788888898533 2224788888876665432
Q ss_pred CceEEE---EecCCccCCCCCCCchHHHHHH---HHhhcC-CCcEEEee--CCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 216 EGFVYL---VSSIGVTGARASISGHVQTLLR---EIKESS-TKPVAVGF--GISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 216 ~gfiY~---vs~~G~TG~~~~~~~~~~~~l~---~vk~~~-~~Pv~vGf--GIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
...+-+ ....|+ --...-+.+..+.++ -.|-.. +..+-+.. .-..++-....+.+||+++++|..++.
T Consensus 213 ~~~i~~~~~~p~~gT-~l~~~~~~~~~e~l~~iA~~Rl~lp~~~i~i~~~~~~~~~~~~~~~L~~Gan~~~~~~~~~t 289 (312)
T d1r30a_ 213 PESVPINMLVKVKGT-PLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLT 289 (312)
T ss_dssp CSEEEEEECCCCTTS-TTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSS
T ss_pred CCeeeeccccCCCCc-ccccccCCCHHHHHHHHHHHHHhCCCcceEEEechhhcCHHHHHHHHhcCCcEEEecCcccc
Confidence 122322 222332 111112233334433 334444 44333333 333455556678999999999876654
|
| >d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Vibrio marinus [TaxId: 90736]
Probab=95.79 E-value=0.073 Score=46.16 Aligned_cols=123 Identities=16% Similarity=0.214 Sum_probs=70.8
Q ss_pred HHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHHh----
Q 021527 159 FMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVEA---- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~---- 214 (311)
-...+++.|++.+|+..- ..+....=...+.++|+.+|+-+.-+. ++| ++.+...
T Consensus 80 Sa~mlkd~g~~yviiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCVGE~~-~~r~~~~~~~vv~~Ql~~~~~~~~~~ 158 (255)
T d1aw1a_ 80 SPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESD-AQNEAGETMAVCARQLDAVINTQGVE 158 (255)
T ss_dssp CHHHHGGGTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCH-HHHHTTCHHHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHhhhcceeeecchhccccccccHHHHHHHHHHHHHhccceEEEeccch-hhhhcccceeeeehhhhhhhcchhhh
Confidence 456778889999998631 011122224556778998888776543 222 1112111
Q ss_pred --CCceEEEEecCC-ccCCCCCCCchHHHHHHHHhhc----C-----CCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhH
Q 021527 215 --SEGFVYLVSSIG-VTGARASISGHVQTLLREIKES----S-----TKPVAVGFGISKPEHVQQVAG-WGADGVIVGSA 281 (311)
Q Consensus 215 --a~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~----~-----~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSa 281 (311)
..-+|-|.+.-. .||... .+.+..+....+|+. . ++||+.|+-|+ +++++++.. -+.||+-||+|
T Consensus 159 ~~~~iiIAYEPvWAIGtg~~a-~~~~i~~~~~~i~~~~~~~~~~~~~~i~ilYGGSV~-~~N~~~i~~~~~vDG~LVG~A 236 (255)
T d1aw1a_ 159 ALEGAIIAYEPIWAIGTGKAA-TAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVK-PENAAAYFAQPDIDGALVGGA 236 (255)
T ss_dssp GGTTCEEEECCGGGTTTSCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCC-TTTHHHHHTSTTCCEEEESGG
T ss_pred hcccceEEecchhcccCCccc-chhhhhHHHHHHHHhhhcccccccccceEEEcCCCC-HhHHHHHhcCCCCCeEEechH
Confidence 122444433221 255422 222333333333332 1 47999999997 799999885 35899999998
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 237 Sl~ 239 (255)
T d1aw1a_ 237 ALD 239 (255)
T ss_dssp GGS
T ss_pred hcC
Confidence 876
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=95.75 E-value=0.064 Score=47.15 Aligned_cols=122 Identities=14% Similarity=0.198 Sum_probs=71.5
Q ss_pred HHHHHHHcCCcEEEe-----cCCChhh----HHHHHHHHHHcCCCeEEEeC--------CCChHHHHHHHHHh--CCce-
Q 021527 159 FMSTVRDIGIRGLVV-----PDVPLEE----TESLQKEAMKNKIELVLFTT--------PTTPTDRMKAIVEA--SEGF- 218 (311)
Q Consensus 159 fi~~~~~aGadGvii-----pDlp~ee----~~~~~~~~~~~gi~~I~lis--------p~t~~eri~~i~~~--a~gf- 218 (311)
.++.+.+.|+|+|-+ ||-+.++ ..++.++|+++|+..++-+- ..+.++.+...++. ..|.
T Consensus 111 sv~~a~~~GadaVk~lv~~~~d~~~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaD 190 (291)
T d1to3a_ 111 NAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGAD 190 (291)
T ss_dssp CHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCS
T ss_pred CHHHHHhccCceEEEEEeeCCcccHHHHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCc
Confidence 467788899998844 5776543 45678889999998765221 11223333322232 1233
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc-EEEeeCCCCHHHHHH----HHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKP-VAVGFGISKPEHVQQ----VAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P-v~vGfGIst~e~v~~----v~~~GADGvIVGSaiv~ 284 (311)
++-+- .+|.............+++-..+.+| |+.|.|.+ .+++.+ ..+.||-|+++|=++-.
T Consensus 191 i~K~~---~p~~~~~~~~~~~~~~~~~~~~~~~p~vvLs~G~~-~~~f~~~l~~A~~aGa~G~~~GR~iw~ 257 (291)
T d1to3a_ 191 LYKVE---MPLYGKGARSDLLTASQRLNGHINMPWVILSSGVD-EKLFPRAVRVAMEAGASGFLAGRAVWS 257 (291)
T ss_dssp EEEEC---CGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTSC-TTTHHHHHHHHHHTTCCEEEESHHHHG
T ss_pred EEEEe---cCCCchhhhHHHHHHHHHHhhcCCCcEEEEeCCCC-HHHHHHHHHHHHHCCCeEEEeChhhhh
Confidence 33232 23322222233344466666667899 66688875 455544 55799999999955544
|
| >d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.70 E-value=0.043 Score=47.78 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=70.7
Q ss_pred HHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH--------HH-HHHHh---C---
Q 021527 159 FMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDR--------MK-AIVEA---S--- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~er--------i~-~i~~~---a--- 215 (311)
-...+++.|++.+|+..- ..+...+=...+.++|+.+|+-+.-+. ++| +. .+... .
T Consensus 86 Sa~mL~d~G~~yviiGHSERR~~~~Etd~~i~~K~~~al~~~l~pIlCvGE~~-~~~~~~~~~~~~~~Ql~~~~~~~~~~ 164 (257)
T d1mo0a_ 86 SPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKL-EEREAGHTKDVNFRQLQAIVDKGVSW 164 (257)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCH-HHHHTTCHHHHHHHHHHHHHTTTCCS
T ss_pred cHHHHHHhCcceeeecchhhhhhhcchHHHHHHHHHHHhhccceEEEeecccc-ccccccchhheehhhhhccccccccc
Confidence 456678889999888631 111122334456788998888776432 222 11 11111 1
Q ss_pred Cc-eEEEEecCC-ccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHh
Q 021527 216 EG-FVYLVSSIG-VTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAM 282 (311)
Q Consensus 216 ~g-fiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSai 282 (311)
.. .|-|.+.-. .||.. ..+.+..+....+|+.. ++||+.|+.|+ ++++++++. -+.||+-||+|=
T Consensus 165 ~~iiIAYEPvWAIGtG~~-a~~~~i~e~~~~Ir~~l~~~~~~~~~~~~~iLYGGSV~-~~N~~~i~~~~~vDG~LVGgAS 242 (257)
T d1mo0a_ 165 ENIVIAYEPVWAIGTGKT-ASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVT-ADNAAELGKKPDIDGFLVGGAS 242 (257)
T ss_dssp TTEEEEECCGGGTTTSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCC-TTTHHHHTTSTTCCEEEESGGG
T ss_pred cceEEEecchhhcccccc-cchhhhhhHHHHHHHHHHHhhCHhhcCcccEEeeCCcC-HHHHHHHhcCCCCCeEEeehHh
Confidence 12 233333221 35543 22344555554454431 47899999997 799999885 358999999985
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 243 L~ 244 (257)
T d1mo0a_ 243 LK 244 (257)
T ss_dssp GS
T ss_pred CC
Confidence 54
|
| >d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.66 E-value=0.019 Score=49.80 Aligned_cols=123 Identities=18% Similarity=0.260 Sum_probs=71.5
Q ss_pred HHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH--------HHHHHHh----CC--
Q 021527 159 FMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDR--------MKAIVEA----SE-- 216 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~~~----a~-- 216 (311)
-.+.+++.|++.+|+..- ..+....=...+.++|+.+|+-+.-+. ++| +...... ..
T Consensus 77 Sa~mLkd~G~~~viiGHSERR~~~~Etd~~i~~K~~~al~~~l~pI~CiGE~~-~~~~~~~~~~~~~~Ql~~~l~~~~~~ 155 (246)
T d1o5xa_ 77 SAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESL-EQREQNKTIEVITKQVKAFVDLIDNF 155 (246)
T ss_dssp CHHHHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCH-HHHHTTCHHHHHHHHHHTTGGGCCCT
T ss_pred cHHHHhhcccceeeeccccchhhhccchHHHHHHHHHHHHcccceEEEEeccc-ccccchhhHHHHHHHHHhhhhhhccc
Confidence 456788999999999631 011122224456788999888776543 222 1111121 11
Q ss_pred -c-eEEEEecCC-ccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHh
Q 021527 217 -G-FVYLVSSIG-VTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAM 282 (311)
Q Consensus 217 -g-fiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSai 282 (311)
. .+-|.+.-. .||.. ..+....+....+|+.. ++||+.|+.|+ +++++++++ -+.||+-||+|-
T Consensus 156 ~~iiIAYEPvWAIGTG~~-as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~-~~N~~~i~~~~~idG~LVG~AS 233 (246)
T d1o5xa_ 156 DNVILVYEPLWAIGTGKT-ATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVN-TENCSSLIQQEDIDGFLVGNAS 233 (246)
T ss_dssp TSEEEEECCGGGSSSSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCC-TTTHHHHHTSTTCCEEEECGGG
T ss_pred ccEEEEecccccccCCCC-cccchhhhhhhHHHHHHHHHhhHhhcCcccEEEeCCCC-HhHHHHHhcCCCCCEEEeeccc
Confidence 1 333333221 35532 22333444444444321 48999999997 699999984 458999999987
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 234 L~ 235 (246)
T d1o5xa_ 234 LK 235 (246)
T ss_dssp GS
T ss_pred CC
Confidence 64
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.65 E-value=0.076 Score=48.46 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=81.0
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcC----------CCe--EEEeCCCChH
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK----------IEL--VLFTTPTTPT 205 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~g----------i~~--I~lisp~t~~ 205 (311)
+++||+- .-++.+ +..++...+.+.|.=|+|--..++|+..+.....+... ... -..++|.. .
T Consensus 44 l~iPIis-s~MDtV---~~~~mA~~la~~Gglgvlhr~~~~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~-~ 118 (368)
T d2cu0a1 44 LNIPILS-AAMDTV---TEWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFD-I 118 (368)
T ss_dssp ESSSEEE-CCCTTT---CSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTTC-H
T ss_pred cCCCEEe-CCCCCc---CCHHHHHHHHHCCCeeEecccCCHHHHHHHHHhhhhhhhccccccccCccEEEEeccChHH-H
Confidence 5688765 222223 34578888889998888776788887655554444321 111 12234543 4
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+|+..+.+..-.++.+-...| . .....+.++++|+..++|+++ ++|.|++.+..+ +|||+|-||
T Consensus 119 ~r~~~l~~aGvd~ivID~A~G---h----~~~~i~~lK~ir~~~~~~vIa-GNVaT~e~~~~l--~gaD~VkVG 182 (368)
T d2cu0a1 119 KRAIELDKAGVDVIVVDTAHA---H----NLKAIKSMKEMRQKVDADFIV-GNIANPKAVDDL--TFADAVKVG 182 (368)
T ss_dssp HHHHHHHHTTCSEEEEECSCC---C----CHHHHHHHHHHHHTCCSEEEE-EEECCHHHHTTC--TTSSEEEEC
T ss_pred HHHHHHHHcCCCEEEecCccc---c----hhhhhhhhhhhhhhcccceee-ccccCHHHHHhh--hcCcceeec
Confidence 777776664444443322222 1 334567899999988999876 899999988664 689999997
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.63 E-value=0.54 Score=39.93 Aligned_cols=117 Identities=23% Similarity=0.216 Sum_probs=68.2
Q ss_pred HHHHHHHcCCcEEEec-CCC------hhhHHHHHHHHHHcCC--CeEEEeCCCChHHHHHHHHHh--CCceEEEEecCCc
Q 021527 159 FMSTVRDIGIRGLVVP-DVP------LEETESLQKEAMKNKI--ELVLFTTPTTPTDRMKAIVEA--SEGFVYLVSSIGV 227 (311)
Q Consensus 159 fi~~~~~aGadGviip-Dlp------~ee~~~~~~~~~~~gi--~~I~lisp~t~~eri~~i~~~--a~gfiY~vs~~G~ 227 (311)
-++.+.+.|||-+=+. ++. .+|..+..+.++.+|. ++|+ =++-.+++.+....+. ..|..|+-+++|.
T Consensus 93 E~~~Ai~~GAdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIl-Et~~L~~~~i~~a~~~a~~aGadFVKTSTG~ 171 (234)
T d1n7ka_ 93 EAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVIL-EAPLWDDKTLSLLVDSSRRAGADIVKTSTGV 171 (234)
T ss_dssp HHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEEC-CGGGSCHHHHHHHHHHHHHTTCSEEESCCSS
T ss_pred HHHHHHHcCCCeEEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEE-eccccchHHHHHHHHHHHHhhhhheeecccc
Confidence 3456788999876442 222 1345566777787774 2222 1233334444444443 3577777776663
Q ss_pred cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 228 TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
... ...+..+..+.+.++ ..++.|=+.+||+|.+++.+++++||| -+||
T Consensus 172 ~~~-gat~~~~~~l~~~~~-~~~vgIKasGGIrt~~~a~~~i~aGa~--rIGt 220 (234)
T d1n7ka_ 172 YTK-GGDPVTVFRLASLAK-PLGMGVKASGGIRSGIDAVLAVGAGAD--IIGT 220 (234)
T ss_dssp SCC-CCSHHHHHHHHHHHG-GGTCEEEEESSCCSHHHHHHHHHTTCS--EEEE
T ss_pred cCC-CCCHHHHHHHHHHhc-CCCCcEEeeCCcCCHHHHHHHHHccCc--eeec
Confidence 211 122333333333232 235788899999999999999999999 4573
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=95.60 E-value=0.53 Score=40.36 Aligned_cols=183 Identities=11% Similarity=0.066 Sum_probs=101.9
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cCCCcEEEEecCcc--
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QMSCPIALFTYYNP-- 150 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~~iPiilm~Y~n~-- 150 (311)
++.++-+++++.|.++|++.||+|.|-+ -+...+. .+... ++.+..+++ ..+..+..+.-...
T Consensus 30 ~~~~~ki~i~~~L~~~Gv~~IEvg~~~~---------~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (303)
T d1rqba2 30 MAMEDMVGACADIDAAGYWSVECWGGAT---------YDSCIRF--LNEDP---WERLRTFRKLMPNSRLQMLLRGQNLL 95 (303)
T ss_dssp CCGGGTGGGHHHHHHTTCSEEEEEETTH---------HHHHHHT--SCCCH---HHHHHHHHHHCTTSCEEEEECGGGTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcC---------hHHHHHH--hcCch---HHHHHHHHhhhhhHHHHHHhcccccc
Confidence 4567778899999999999999995431 1111110 11121 122223222 23445555432111
Q ss_pred ----hhccCHHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEE-eC---CCChHHHHHH----HHHhCC
Q 021527 151 ----ILKRGVDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLF-TT---PTTPTDRMKA----IVEASE 216 (311)
Q Consensus 151 ----i~~~g~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~l-is---p~t~~eri~~----i~~~a~ 216 (311)
..............+.+.+-+-.-+-- .+......+.++..|...... .. +..+.++..+ +.+..-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 175 (303)
T d1rqba2 96 GYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGA 175 (303)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTC
T ss_pred cccccchhhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence 111223445566677788877665422 345666777788888764322 22 2223344323 333334
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
..+|+....| . ..|..+.++++.+++.. ++|+-+ .+|.. ..+.-..+++|++.+
T Consensus 176 ~~i~l~DT~G---~--~~P~~v~~li~~l~~~~~~~i~i~~H~Hnd~Gla-~AN~laA~~aG~~~i 235 (303)
T d1rqba2 176 DSIALKDMAA---L--LKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVT-EVSLMKAIEAGVDVV 235 (303)
T ss_dssp SEEEEEETTC---C--CCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCH-HHHHHHHHHTTCSEE
T ss_pred cEEeecCccc---h--hhhHHHHHHHHHHHhhcCCcccceeccCchHHHH-HHHHHHHHHcCCCEE
Confidence 4677776444 3 34677899999998864 567765 34443 245667778999854
|
| >d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.58 E-value=0.058 Score=46.69 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=72.0
Q ss_pred HHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH--------H----HHHHHhC---
Q 021527 159 FMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDR--------M----KAIVEAS--- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~er--------i----~~i~~~a--- 215 (311)
-.+.+++.|++.+|+..- ..+...+=...+.++|+.+|+-+.-+. ++| + ......-
T Consensus 78 S~~mLkd~G~~yvIiGHSERR~~~~Et~~~i~~K~~~~~~~~l~pI~CiGE~~-~~~~~~~~~~~l~~Ql~~~~~~~~~~ 156 (249)
T d1kv5a_ 78 SLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETL-QERESGRTAVVVLTQIAAIAKKLKKA 156 (249)
T ss_dssp BHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCH-HHHHTTCHHHHHHHHHHHHHHTCCGG
T ss_pred cHHHHHhhccchhhhcchhhhhhhcccHHHHHHHHHHHHhcCCceEEEecccc-ccccccchHHHHHHHHHhhhcccccc
Confidence 456788899999999631 111122224456778999888877543 222 1 1111110
Q ss_pred ---CceEEEEecCC-ccCCCCCCCchHHHHHHHHhhc----C------CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhh
Q 021527 216 ---EGFVYLVSSIG-VTGARASISGHVQTLLREIKES----S------TKPVAVGFGISKPEHVQQVAGW-GADGVIVGS 280 (311)
Q Consensus 216 ---~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~----~------~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGS 280 (311)
.-.|-|.+.-. .||.. ..+.+..+....+|+. . ++||+.|+.|+ ++++++++.. +.||+-||+
T Consensus 157 ~~~~iiIAYEPvWAIGtG~~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~~~~ilYGGSV~-~~N~~~i~~~~~vDG~LVGg 234 (249)
T d1kv5a_ 157 DWAKVVIAYEPVWAIGTGKV-ATPQQAQEAHALISSWVSSKIGADVAGELRILYGGSVN-GKNARTLYQQRDVNGFLVGG 234 (249)
T ss_dssp GGGGEEEEECCGGGSSSSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCC-TTTHHHHHTSTTCCEEEESG
T ss_pred cccceEEecCceeccccccc-ccchhhhhhhHHHHHHHHHhcChhhcCCCcEEEcCCCC-HhHHHHHhcCCCCCEEEech
Confidence 11333333221 35532 2233444444444443 2 48999999997 6999999854 489999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
|=.+
T Consensus 235 ASl~ 238 (249)
T d1kv5a_ 235 ASLK 238 (249)
T ss_dssp GGGS
T ss_pred HhcC
Confidence 8765
|
| >d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Prosthecochloris vibrioformis [TaxId: 1098]
Probab=95.56 E-value=0.27 Score=43.86 Aligned_cols=178 Identities=20% Similarity=0.276 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCCCCCCCChHHHHHHHHHHHHcCCCHH-HHHHHHHHhhccCCCcEEEEe--cCcchh
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPYSDPLADGPVIQAAATRSLARGTNFN-AILSMLKEVVPQMSCPIALFT--YYNPIL 152 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~-~~~~~i~~ir~~~~iPiilm~--Y~n~i~ 152 (311)
+...+.++.+.+.|+..+-| |+|-. ..-||. .|+ +.+ -+-+.++.||++.. -+++++ -..|+.
T Consensus 55 d~L~~~ie~~~~lGI~av~LFpv~~~-K~k~gs-------eA~----n~dglv~rAir~iK~~fp-dl~Ii~DVcLcpYT 121 (319)
T d2c1ha1 55 DRAVEECKELYDLGIQGIDLFGIPEQ-KTEDGS-------EAY----NDNGILQQAIRAIKKAVP-ELCIMTDVALDPFT 121 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSC-CCTTCG-------GGG----CTTCHHHHHHHHHHHHCT-TSEEEEECCSGGGS
T ss_pred HHHHHHHHHHHhccCcEEEEEecccc-cccCch-------hhc----ccccHHHHHHHHHHhhhc-CeEEEeecccchhh
Confidence 57899999999999999877 55432 222341 111 111 12346667776542 144442 222221
Q ss_pred --------ccC-------HHHHHH---HHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC--------------
Q 021527 153 --------KRG-------VDNFMS---TVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT-------------- 200 (311)
Q Consensus 153 --------~~g-------~~~fi~---~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis-------------- 200 (311)
.-| ++...+ ..+++|+|.|-=.|+=.......++.+.++|...+..++
T Consensus 122 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiVAPSdMMDGrV~aIR~~Ld~~g~~~v~ImSYsaKfaS~fYGPFR 201 (319)
T d2c1ha1 122 PFGHDGLVKDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETDHSDVGILSYAAKYASSFYGPFR 201 (319)
T ss_dssp TTCCSSCBSSSCBCSHHHHHHHHHHHHHHHHHTCSEEECCSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCSCCHHHH
T ss_pred hhcccceecCCCcchHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHhcCcccceeeeHHHHHhHHhhHHHH
Confidence 111 122333 247799999766688777788899999999996554322
Q ss_pred ------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC-
Q 021527 201 ------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS- 260 (311)
Q Consensus 201 ------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs- 260 (311)
|....+-+.+... ..+|..+++=.-| + ...+.|+++|+.+++||++ +-||
T Consensus 202 da~~S~p~~gdr~~YQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa-------~--~yLDii~~~k~~~~~Pv~a-YqVSG 271 (319)
T d2c1ha1 202 DALHSAPQFGDKSTYQMNPANTEEAMKEVELDIVEGADIVMVKPG-------L--AYLDIVWRTKERFDVPVAI-YHVSG 271 (319)
T ss_dssp HHSCCCCCCSCSTTTSBCTTCSHHHHHHHHHHHHHTCSEEEEESC-------G--GGHHHHHHHHHHHCSCEEE-EECHH
T ss_pred HHHhchhhcCCcceeecCCCChHHHHHHHHHHHhcCCCeEEecch-------h--HHHHHHHHHHhccCCCEEE-EEcch
Confidence 3333444444333 3567766642111 1 2468899999999999954 4332
Q ss_pred --------------C-----HHHHHHHHHcCCcEEE
Q 021527 261 --------------K-----PEHVQQVAGWGADGVI 277 (311)
Q Consensus 261 --------------t-----~e~v~~v~~~GADGvI 277 (311)
+ .|....+.++|||.+|
T Consensus 272 EYamik~a~~~g~~d~~~~~~Esl~~~kRAGAd~Ii 307 (319)
T d2c1ha1 272 EYAMVKAAAAKGWIDEDRVMMESLLCMKRAGADIIF 307 (319)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHCCCCcHHHHHHHHHHHHHHcCCCEEE
Confidence 1 2344456678888775
|
| >d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.46 E-value=0.081 Score=45.72 Aligned_cols=123 Identities=14% Similarity=0.234 Sum_probs=72.3
Q ss_pred HHHHHHHcCCcEEEecCC------C--hhhHHHHHHHHHHcCCCeEEEeCCCChHHH--------HHHHH-Hh-------
Q 021527 159 FMSTVRDIGIRGLVVPDV------P--LEETESLQKEAMKNKIELVLFTTPTTPTDR--------MKAIV-EA------- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl------p--~ee~~~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~-~~------- 214 (311)
-.+.+++.|++.+|+..- . .+...+=...+.++|+.+|+-+.-+. ++| +.... ..
T Consensus 78 Sa~mlkd~g~~yviiGHSErR~~~~E~~~~i~~K~~~~~~~~l~pI~CiGE~~-~e~~~~~~~~~~~~ql~~~~~~~~~~ 156 (251)
T d2btma_ 78 SPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESL-EEREAGQTNAVVASQVEKALAGLTPE 156 (251)
T ss_dssp CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCH-HHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHhCcceeeecchhhhhhhcchHHHHHHHHHHhhcCCCeEEEEecccc-cccccchhhhHHHHHHHhhhcccchh
Confidence 456678889999998631 0 11122234455677998888777543 222 11111 11
Q ss_pred --CCceEEEEecCC-ccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhh
Q 021527 215 --SEGFVYLVSSIG-VTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVAGW-GADGVIVGS 280 (311)
Q Consensus 215 --a~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGS 280 (311)
..-.+-|.++-. .||... .+....+..+.+|+.. ++||+.|+.|+ ++++.+++.. +.||+-||+
T Consensus 157 ~~~~iiIAYEPvWAIGTG~~a-~~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~-~~N~~~i~~~~~vDG~LVG~ 234 (251)
T d2btma_ 157 QVKQAVIAYEPIWAIGTGKSS-TPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVK-PDNIRDFLAQQQIDGALVGG 234 (251)
T ss_dssp HHTTCEEEECCGGGTTTSCCC-CHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSCC-TTTHHHHHTSTTCCEEEESG
T ss_pred ccceEEEEeccccccccccCC-ChhhhhhhHHHHHHHHHhhcchhhcccCcEEeeCCCC-HhHHHHHhcCCCCCEEEech
Confidence 112344433221 355432 2344555555555532 57999999997 7999999863 479999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
|=.+
T Consensus 235 ASl~ 238 (251)
T d2btma_ 235 ASLE 238 (251)
T ss_dssp GGSS
T ss_pred HhCC
Confidence 8776
|
| >d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.79 Score=41.00 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEE-cCCC----CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCc
Q 021527 76 LSTTAEALKLLDSCGSDIIEL-GVPY----SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYN 149 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IEl-G~Pf----sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n 149 (311)
.+...+.++.+.+.|+..+-| |+|- .|+...- |+. --+ -+-+.+++||+.. ++-|+...-..
T Consensus 68 id~L~~eie~~~~lGI~av~LF~vpi~~~~Kd~~gse---------A~n-~~~--lv~rAIr~iK~~fpdl~vi~DVcLc 135 (340)
T d1h7na_ 68 VNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTA---------ADD-PAG--PVIQGIKFIREYFPELYIICDVCLC 135 (340)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGG---------GGC-TTS--HHHHHHHHHHHHCTTSEEEEEECST
T ss_pred HHHHHHHHHHHHHcCCCeeecCCCCCCCCCCCCcchh---------hhh-hcc--HHHHHHHHHHhhhcccEEEeccccc
Confidence 367899999999999999887 6553 2332210 110 000 1223566777653 33333332222
Q ss_pred ch--------h-ccCH-------HHHHH---HHHHcCCcEEEecCCChhhHHHHHHHHHHc-CCCeEEEe----------
Q 021527 150 PI--------L-KRGV-------DNFMS---TVRDIGIRGLVVPDVPLEETESLQKEAMKN-KIELVLFT---------- 199 (311)
Q Consensus 150 ~i--------~-~~g~-------~~fi~---~~~~aGadGviipDlp~ee~~~~~~~~~~~-gi~~I~li---------- 199 (311)
|+ . ..+. +...+ ..+++|+|.|--.|+=.......++.+.++ |...+..+
T Consensus 136 pYT~hGHcGil~~~~~innd~Tl~~L~k~Al~~A~AGaDiVAPSDMMDGrV~aIR~~Ld~~~~~~~~~ImSYsaKyaS~f 215 (340)
T d1h7na_ 136 EYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNL 215 (340)
T ss_dssp TTBTTCCSSCBCTTSSBCHHHHHHHHHHHHHHHHHHTCSEEEECCCCTTHHHHHHHHHHHTTCTTTCEEEEEEEEBCSSC
T ss_pred hhhhhcccccccccccccchHHHHHHHHHHHHHHHccCCcccccccchhHHHHHHHHHHHhcCCcceeeehHHHHHhhhh
Confidence 21 1 1111 22333 247799999876788767777788888776 44423211
Q ss_pred ----------------------CCCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE
Q 021527 200 ----------------------TPTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV 255 (311)
Q Consensus 200 ----------------------sp~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v 255 (311)
.|....+.+.+... ..+|..+++=.-| + ...+.|+++|+.+ ++|+++
T Consensus 216 YGPFRdA~~S~p~~gdrktYQmd~~n~~eAl~e~~~D~~EGAD~lMVKPa-------~--~yLDii~~~k~~~~~~Pv~a 286 (340)
T d1h7na_ 216 YGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADGIIVKPS-------T--FYLDIMRDASEICKDLPICA 286 (340)
T ss_dssp CHHHHHHHTCCCSSSCSTTTSBCTTCHHHHHHHHHHHHHTTCSEEEEESS-------G--GGHHHHHHHHHHTTTSCEEE
T ss_pred hhHHHHHHhhhhcCCCCceeecCchhhHHHHHHHHHHHhcCCCeEEecch-------H--HHHHHHHHHHHhCCCCCEEE
Confidence 13333454544433 3677776652111 1 2468899999877 799955
Q ss_pred eeCC---------------CC-----HHHHHHHHHcCCcEEE
Q 021527 256 GFGI---------------SK-----PEHVQQVAGWGADGVI 277 (311)
Q Consensus 256 GfGI---------------st-----~e~v~~v~~~GADGvI 277 (311)
+-| -+ .|....+.++|||.+|
T Consensus 287 -YqVSGEYami~~aa~~G~~d~~~~~~E~l~~~kRAGAd~Ii 327 (340)
T d1h7na_ 287 -YHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLII 327 (340)
T ss_dssp -EECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEE
T ss_pred -EEchHHHHHHHHHHHCCCCcHHHHHHHHHHHHHhcCCCEEE
Confidence 322 22 2455667788999886
|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: GlpP-like family: GlpP-like domain: Glycerol uptake operon antiterminator-related protein TM1436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.36 E-value=0.17 Score=41.37 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=60.6
Q ss_pred HHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE--EeCCCChHHH-HHHHHHhCCceEEEEecCCccCCCCCCCchH
Q 021527 162 TVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL--FTTPTTPTDR-MKAIVEASEGFVYLVSSIGVTGARASISGHV 238 (311)
Q Consensus 162 ~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~--lisp~t~~er-i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~ 238 (311)
.+++.++||+|=.- ..+...+++.|+..|+ |+-.+.+-++ ++.+......++=+.+ |. +++
T Consensus 66 flk~~~~dGIISTk------~~~i~~Ak~~Gl~tIqR~FliDS~al~~~~~~i~~~~PD~IEiLP--G~------i~p-- 129 (172)
T d1vkfa_ 66 FVKKAGADGIITIK------PKNYVVAKKNGIPAVLRFFALDSKAVERGIEQIETLGVDVVEVLP--GA------VAP-- 129 (172)
T ss_dssp HHHHHTCSEEEESC------HHHHHHHHHTTCCEEEEEECCSHHHHHHHHHHHHHHTCSEEEEES--GG------GHH--
T ss_pred HHHHcCCCEEEECC------HHHHHHHHHcCCeEEEEEEeeehHHHHHHHHHHhhcCCCEEEECC--ch------hhH--
Confidence 34557899986652 2367788999998774 4444444455 4444444556654443 21 111
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
.. +++.++.|+++|+=|++.|++.+++.. +.+|
T Consensus 130 -~i---i~~~~~~piIAGGLI~~~edv~~al~~-g~aV 162 (172)
T d1vkfa_ 130 -KV---ARKIPGRTVIAAGLVETEEEAREILKH-VSAI 162 (172)
T ss_dssp -HH---HTTSTTSEEEEESCCCSHHHHHHHTTT-SSEE
T ss_pred -HH---HHHhcCCCEEeeCCcCCHHHHHHHHhc-CeEE
Confidence 22 456677899999999999999999965 5565
|
| >d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.38 Score=42.87 Aligned_cols=183 Identities=13% Similarity=0.204 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC-CCCCCChHHHHHHHHHHHHcCCCHHH-HHHHHHHhhccCCCcEEEEe--cCcch
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY-SDPLADGPVIQAAATRSLARGTNFNA-ILSMLKEVVPQMSCPIALFT--YYNPI 151 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf-sDP~aDGp~Iq~a~~~Al~~G~~~~~-~~~~i~~ir~~~~iPiilm~--Y~n~i 151 (311)
+..++.++.+.+.|+..|-| |+|- .|. +|. .|+ +.+. +-+.++.+++... -+++|+ -..|+
T Consensus 58 d~Lv~eie~~~~lGI~av~LFpv~~~kdk--~gs-------eA~----n~d~lv~rai~~iK~~~p-di~vi~DVcLcpY 123 (323)
T d1l6sa_ 58 KHLAREIERIANAGIRSVMTFGISHHTDE--TGS-------DAW----REDGLVARMSRICKQTVP-EMIVMSDTCFCEY 123 (323)
T ss_dssp GGHHHHHHHHHHHTCCEEEEEEECSSCBS--SCG-------GGG----STTSHHHHHHHHHHHHCT-TSEEEEEECSTTT
T ss_pred HHHHHHHHHHHHcccceeeeeccccccCC--Cch-------hhc----CCccHHHHHHHHHHhhCC-Cceeeeccccchh
Confidence 46999999999999998877 4432 222 221 111 1111 1235555665431 144442 22222
Q ss_pred h---------ccCH------HHHHH---HHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC-------------
Q 021527 152 L---------KRGV------DNFMS---TVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT------------- 200 (311)
Q Consensus 152 ~---------~~g~------~~fi~---~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis------------- 200 (311)
. ..++ +..++ ..+++|+|.|-=.|+=.......++.+.++|...+..++
T Consensus 124 T~hGHcGil~~~~IdND~Tl~~L~k~Al~~A~AGaDiVAPSdMMDGrV~aIR~~Ld~~g~~~v~ImSYsaKyaS~fYGPF 203 (323)
T d1l6sa_ 124 TSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPF 203 (323)
T ss_dssp BSSCCSSCBCSSSBCHHHHHHHHHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEBCCCEEBCCSCCHHH
T ss_pred hhhccceeeccCCCCcHHHHHHHHHHHHHHHHhcCCeeecccccCCHHHHHHHHHHhcCccccceeehhhhccccccchh
Confidence 1 1111 22333 246799999877788777888899999999997665433
Q ss_pred ------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE------
Q 021527 201 ------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV------ 255 (311)
Q Consensus 201 ------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v------ 255 (311)
|....+-+.+... ..+|..+++=.-| .+ ..+.|+++|+.+++||++
T Consensus 204 RdA~~s~~~gdr~sYQmd~~n~~ea~~e~~~d~~EGAD~lmVKPa-------~~--yLDii~~~k~~~~~Pv~aYqVSGE 274 (323)
T d1l6sa_ 204 REAAGSALKGDRKSYQMNPMNRREAIRESLLDEAQGADCLMVKPA-------GA--YLDIVRELRERTELPIGAYQVSGE 274 (323)
T ss_dssp HHHHTCCCSSCCTTTSBCTTCHHHHHHHHHHHHHTTCSBEEEESC-------TT--CHHHHHHHHTTCSSCEEEEECHHH
T ss_pred HHHhcCCCCCCCcceecCcccchHHHHHHHHHHhhccceEEeccc-------hh--hHHHHHHHHHhcCCCEEEEEccHH
Confidence 3333344444333 3567766642111 12 367899999999999965
Q ss_pred ---------eeCCCC----HHHHHHHHHcCCcEEEEhhHhhc
Q 021527 256 ---------GFGISK----PEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 256 ---------GfGIst----~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
-+.+.. .|....+.++|||.+| |.+.+
T Consensus 275 Yami~~aa~~g~~d~~~~~~E~l~~~kRAGAd~Ii--tY~A~ 314 (323)
T d1l6sa_ 275 YAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIF--SYFAL 314 (323)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEE--ETTHH
T ss_pred HHHHHHHHHcCCCchHhHHHHHHHHHHhcCCCEEE--EcCHH
Confidence 123321 2334556688888876 44444
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=95.18 E-value=0.61 Score=39.82 Aligned_cols=219 Identities=15% Similarity=0.164 Sum_probs=109.7
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-C
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-S 139 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~ 139 (311)
|++.+.+=|+ .++.+...+.++...+.|+|++|+=+=+ +.+- .+.+++.+.++.+|+.. +
T Consensus 14 g~pkIcv~l~--~~~~~~~~~~~~~~~~~~aD~vE~RlD~---l~~~--------------~~~~~l~~~~~~lr~~~~~ 74 (252)
T d1gqna_ 14 GMPKIIVSLM--GRDINSVKAEALAYREATFDILEWRVDH---FMDI--------------ASTQSVLTAARVIRDAMPD 74 (252)
T ss_dssp SSCEEEEEEC--CSSHHHHHHHHHHHTTSCCSEEEEEGGG---CSCT--------------TCHHHHHHHHHHHHHHCTT
T ss_pred CCCEEEEEeC--CCCHHHHHHHHHHHhhcCCCEEEEEEcc---cccc--------------CCHHHHHHHHHHHHHhcCC
Confidence 4554443333 4788899999999999999999995422 2111 23456667888888764 5
Q ss_pred CcEEEEecCc---chhccCHH---HHHHHHHHcC-CcEEEe-cCCChhhHHHHHHHHHHcCCCeEEEeC--CCCh-HHHH
Q 021527 140 CPIALFTYYN---PILKRGVD---NFMSTVRDIG-IRGLVV-PDVPLEETESLQKEAMKNKIELVLFTT--PTTP-TDRM 208 (311)
Q Consensus 140 iPiilm~Y~n---~i~~~g~~---~fi~~~~~aG-adGvii-pDlp~ee~~~~~~~~~~~gi~~I~lis--p~t~-~eri 208 (311)
+|+++-.-.. ..+....+ ++++.+.+.| +|-+=+ -+.+.+....+.+.++..|...|.-.. ..|| .+.+
T Consensus 75 ~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l 154 (252)
T d1gqna_ 75 IPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEM 154 (252)
T ss_dssp SCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHH
T ss_pred CCEEEEEechhhCCCCCCCHHHHHHHHHHHHHcCCCceEeccccccHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHH
Confidence 8988752111 11222223 3555667777 675422 222223355677777888887665321 2232 2232
Q ss_pred HHHHH-h-CCc-eEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 209 KAIVE-A-SEG-FVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 209 ~~i~~-~-a~g-fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+.+ . ..| .++-+..+..+- ...-.+.+...++++. .+.|++ +++-...-.+.+++.. +.||.++-
T Consensus 155 ~~~~~~m~~~gaDivKia~~a~~~---~D~~~ll~~~~~~~~~~~~~P~I-~~~MG~~G~~SRi~~~-----~~GS~~ty 225 (252)
T d1gqna_ 155 VSRLRKMQALGADIPKIAVMPQSK---HDVLTLLTATLEMQQHYADRPVI-TMSMAKEGVISRLAGE-----VFGSAATF 225 (252)
T ss_dssp HHHHHHHHHTTCSEEEEEECCSSH---HHHHHHHHHHHHHHHHTCSSCCE-EEECTTTTHHHHHCHH-----HHTCCEEE
T ss_pred HHHHHHHHHhCCCeEEEEecCCCH---HHHHHHHHHHHHHHHhCCCCCEE-EEecCCcchhHHHHHH-----HhCCceEe
Confidence 22222 1 234 455555432211 1111233344555554 478863 3444333345565432 22343332
Q ss_pred hh-hhcCCc-hhHHHHHHHHHHHHH
Q 021527 285 LL-GEAQSP-EEGLKELEKFAKSLK 307 (311)
Q Consensus 285 ~~-~~~~~~-~~~~~~~~~~~~~l~ 307 (311)
.- ++...| +-.++++++.++-|-
T Consensus 226 a~~~~~sAPGQ~~~~~l~~~l~~l~ 250 (252)
T d1gqna_ 226 GAVKQASAPGQIAVNDLRSVLMILH 250 (252)
T ss_dssp CBSSSCCSTTCCBHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHh
Confidence 21 111112 233666666665553
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=95.18 E-value=0.94 Score=39.88 Aligned_cols=207 Identities=15% Similarity=0.205 Sum_probs=129.8
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.|+..+++| -++..|- -.+.+...-++++.++....+|-=- ..|- .+-. ......
T Consensus 5 ~k~il~~A~~~~-yAV~AfN---~~n~e~~~avi~AAee~~sPvIiq~-------s~~~-~~~~----------~~~~~~ 62 (305)
T d1rvga_ 5 GLEILKKAREEG-YGVGAFN---VNNMEFLQAVLEAAEEQRSPVILAL-------SEGA-MKYG----------GRALTL 62 (305)
T ss_dssp HHHHHHHHHHHT-CCEEEEE---CCSHHHHHHHHHHHHHTTCCEEEEE-------EHHH-HHHH----------HHHHHH
T ss_pred HHHHHHHHHHCC-eEEEEEE---ECCHHHHHHHHHHHHHHCCCEEEEC-------CccH-HhHc----------cHHHHH
Confidence 467777776554 4565565 4567888888999999888876321 1121 1111 123345
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE----E-
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL----F- 198 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~----l- 198 (311)
++....++.++|+.+.. + +....+.+..+.++|.+.|.+ .-+|+|| ..++.+.++.+|+.+=- +
T Consensus 63 ~~~~~a~~~~vpv~lHl--D---H~~~~e~i~~ai~~GftSVMiDgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~ig 137 (305)
T d1rvga_ 63 MAVELAKEARVPVAVHL--D---HGSSYESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLA 137 (305)
T ss_dssp HHHHHHHHCSSCEEEEE--E---EECSHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred HHHHHHhccCCcEEEee--h---hccChhhhHHHHhcCCceEEEcCccccHHHHHHHHHHHHHHhchhceeEEeeeeeee
Confidence 66677778899998863 1 222346788999999999988 4688887 67788899999864210 0
Q ss_pred -------eC----CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEee------
Q 021527 199 -------TT----PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAVGF------ 257 (311)
Q Consensus 199 -------is----p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGf------ 257 (311)
.. --|.++..+...+.. |..++ + +..|.+-.... +.--.+.++++++.+++|++.=+
T Consensus 138 g~Ed~~~~~~~~~~~T~peea~~Fv~~T-gvD~LAvaiGn~HG~Yk~~~~-~~l~~~~l~~I~~~~~~PLVlHGgS~vp~ 215 (305)
T d1rvga_ 138 GIEEHVAVDEKDALLTNPEEARIFMERT-GADYLAVAIGTSHGAYKGKGR-PFIDHARLERIARLVPAPLVLHGASAVPP 215 (305)
T ss_dssp CSCC------CCTTCCCHHHHHHHHHHH-CCSEEEECSSCCSSSBCSSSS-CCCCHHHHHHHHHHCCSCEEECSCCCCCH
T ss_pred cccccccccccccccCCHHHHHHHHHHh-CccHhhhhhhhhhcccCCCCc-ccchHHHHHHHHhccCCCeeccCCccccH
Confidence 00 113345555555543 33344 3 23332211111 11124678999999999987622
Q ss_pred -----------------CCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 258 -----------------GISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 258 -----------------GIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|+. .|++++..+.|.-=+=|+|.+....
T Consensus 216 ~~~~~~~~~g~~lhg~sG~~-~e~i~~ai~~GV~KiNi~T~l~~a~ 260 (305)
T d1rvga_ 216 ELVERFRASGGEIGEAAGIH-PEDIKKAISLGIAKINTDTDLRLAF 260 (305)
T ss_dssp HHHHHHHHTTCCCCSCBCCC-HHHHHHHHHTTEEEEEECHHHHHHH
T ss_pred HHHhhhcccCcccCCCCCCC-HHHHHHHHHcCeEEEEeChHHHHHH
Confidence 665 7999999999988888999876544
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.16 Score=38.10 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=65.1
Q ss_pred EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhhcC
Q 021527 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKESS 249 (311)
Q Consensus 171 viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~~ 249 (311)
|++.|=...-...+...+++.|.+.... .+..+-+..+.+.....+.+- ..-+. +-.++++++|+..
T Consensus 3 ILiVDDd~~~~~~l~~~L~~~g~~v~~a---~~~~eal~~l~~~~~dliilD~~mP~~---------~G~e~~~~ir~~~ 70 (119)
T d1zh2a1 3 VLIVEDEQAIRRFLRTALEGDGMRVFEA---ETLQRGLLEAATRKPDLIILDLGLPDG---------DGIEFIRDLRQWS 70 (119)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEE---SSHHHHHHHHHHHCCSEEEEESEETTE---------EHHHHHHHHHTTC
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEe---CCHHHHHHHHHhcCCCEEEeccccCCC---------CCchHHHHHHhcc
Confidence 3444433333555777888889875432 345566666666555555442 11122 2347899999887
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
+.|+++=.+-++.++..+..+.|||+.++
T Consensus 71 ~~piI~lt~~~~~~~~~~a~~~Ga~dyl~ 99 (119)
T d1zh2a1 71 AVPVIVLSARSEESDKIAALDAGADDYLS 99 (119)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred CCcEEEEeccCCHHHHHHHHHcCCCEEEE
Confidence 88999999999999999999999999865
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=95.08 E-value=0.59 Score=40.46 Aligned_cols=122 Identities=13% Similarity=0.210 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc---CCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG---VPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG---~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
++.+-+...++.+.-...++.=+-.||.+.....+.++.+.++|+..|.|- .|-.-+..+|...+. ..
T Consensus 61 ~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~---------~~ 131 (275)
T d1s2wa_ 61 WTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPL---------AD 131 (275)
T ss_dssp CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCB---------CC
T ss_pred hhhHHHHHHhhhcccCCceeEecccccccchHHHHHHHHHHHhccceeEeecccccccccccccccccc---------cc
Confidence 333334444444444567888889999988899999999999999999993 333333333321000 11
Q ss_pred HHHHHHHHHHhh-ccCCCcEEEEecCcch-hccCHHHHHHH---HHHcCCcEEEecCCC
Q 021527 124 FNAILSMLKEVV-PQMSCPIALFTYYNPI-LKRGVDNFMST---VRDIGIRGLVVPDVP 177 (311)
Q Consensus 124 ~~~~~~~i~~ir-~~~~iPiilm~Y~n~i-~~~g~~~fi~~---~~~aGadGviipDlp 177 (311)
.++...-++..+ .+.+.+++++.-.+.. ...|+++-+++ ..++|+|++.++-+.
T Consensus 132 ~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~~~~~ 190 (275)
T d1s2wa_ 132 IEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK 190 (275)
T ss_dssp HHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred HHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHHHHhcCCCeeeecccc
Confidence 222222222222 2345567776554543 34688888875 478999999988664
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.87 Score=38.86 Aligned_cols=176 Identities=17% Similarity=0.222 Sum_probs=111.6
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
.+||. ++.++...++|||.|=+= |--|---|| -+ .+..+++..++|+=+-++.
T Consensus 22 ~~Pd~---~~~a~~~~~~GadgITvH-----~R~DrRHI~------------~~----Dv~~l~~~~~~~lNlE~a~--- 74 (242)
T d1m5wa_ 22 AYPDP---VQAAFIAEQAGADGITVH-----LREDRRHIT------------DR----DVRILRQTLDTRMNLEMAV--- 74 (242)
T ss_dssp CCSCH---HHHHHHHHTTTCSEEEEE-----CCTTCSSSC------------HH----HHHHHHHHCSSEEEEEECS---
T ss_pred CCCCH---HHHHHHHHHcCCCeEEeC-----CCCCccccc------------hH----HHHHHHHHhhccccccccc---
Confidence 47765 667778888999999883 434443333 33 3456666677888776653
Q ss_pred hccCHHHHHHHHHHcCCcEE-EecCCCh--------------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGL-VVPDVPL--------------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGv-iipDlp~--------------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
.++|++.+.+.--+-+ ++||-+- +....+.+.+++.|+.+.+|+.|. .+.++...+...
T Consensus 75 ----~~e~i~ia~~~kP~qvtLVPe~r~elTTegGld~~~~~~~L~~~i~~l~~~girvSLFiDpd--~~~i~~a~~lGa 148 (242)
T d1m5wa_ 75 ----TEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD--EEQIKAAAEVGA 148 (242)
T ss_dssp ----SHHHHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHTTC
T ss_pred ----chhHHHHHHHhccceEEEeecCccccCcCCceeehhhHHHHHHHHHHHHhcCCeEEEEeccc--hhhHHHHhhcCc
Confidence 3778998888776644 5576542 235667888899999999999987 455555444433
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhc------CCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKES------STKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~------~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..| .-.+|.... ...+......++++++. .++-|-+|=|.+ -+++..+.... -+=|=||.+|+-
T Consensus 149 d~I--ElhTG~Ya~-a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn-~~Nl~~i~~ip~i~EvsIGHaiI~ 219 (242)
T d1m5wa_ 149 PFI--EIHTGCYAD-AKTDAEQAQELARIAKAATFAASLGLKVNAGHGLT-YHNVKAIAAIPEMHELNIGHAIIG 219 (242)
T ss_dssp SEE--EEECHHHHH-CCSHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCC-TTTHHHHHTCTTEEEEEECHHHHH
T ss_pred cee--eeecccccc-cccchhhHHHHHHHHHHHHHHHhcCCcccCCCCcC-ccchHHHhcCCCCeEEeccHHHHH
Confidence 332 222222111 11112222334444432 368899999997 58888887543 588999988875
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=95.05 E-value=0.075 Score=43.29 Aligned_cols=87 Identities=18% Similarity=0.128 Sum_probs=48.5
Q ss_pred HHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCC
Q 021527 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISK 261 (311)
Q Consensus 184 ~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst 261 (311)
+...++.+|++++.+-...++++-++...+.....|-+-+..+. -.+.+.++++.+|+. .++||++|+-|-
T Consensus 57 va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~------~~~~~~~l~~~L~~~g~~~v~VivGG~ip- 129 (168)
T d7reqa2 57 IATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGG------HLTLVPALRKELDKLGRPDILITVGGVIP- 129 (168)
T ss_dssp HHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSC------HHHHHHHHHHHHHHTTCTTSEEEEEESCC-
T ss_pred HHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCccc------chHHHHHHHHHHHhcCCCCeEEEEeCCCC-
Confidence 33445556666554433334444443333333333333332221 123455677778775 367887776664
Q ss_pred HHHHHHHHHcCCcEEE
Q 021527 262 PEHVQQVAGWGADGVI 277 (311)
Q Consensus 262 ~e~v~~v~~~GADGvI 277 (311)
+++...+.+.|+|.+.
T Consensus 130 ~~d~~~l~~~Gv~~iF 145 (168)
T d7reqa2 130 EQDFDELRKDGAVEIY 145 (168)
T ss_dssp GGGHHHHHHHTEEEEE
T ss_pred HHHHHHHHhCCCCEEE
Confidence 6888999999998753
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=95.04 E-value=0.8 Score=40.95 Aligned_cols=209 Identities=16% Similarity=0.193 Sum_probs=117.1
Q ss_pred EeCCCCC---hhhHHHHHHHHHHCCCCEEEEcCCC---CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE
Q 021527 69 ITAGDPD---LSTTAEALKLLDSCGSDIIELGVPY---SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI 142 (311)
Q Consensus 69 i~~G~P~---~~~~~e~~~~L~~~GaD~IElG~Pf---sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi 142 (311)
+.+|-.. .+.+.+.++.+.+.|++++-=| =| +.|+.- .|.. ++.+++++++++++++|+
T Consensus 97 lIAGPC~vES~e~~~~~A~~lke~g~~~~r~g-~fKpRtsp~sf-------------~g~g-~~gL~~l~~~k~~~glpv 161 (338)
T d1vr6a1 97 IIAGPCSVEGREMLMETAHFLSELGVKVLRGG-AYKPRTSPYSF-------------QGLG-EKGLEYLREAADKYGMYV 161 (338)
T ss_dssp EEEECSBCCCHHHHHHHHHHHHHTTCCEEECB-SCCCCCSTTSC-------------CCCT-HHHHHHHHHHHHHHTCEE
T ss_pred EEecCCCCCCHHHHHHHHHHHHHhCccccccc-eeccccccccc-------------ccch-HHHHHHHHHHHhhcCcee
Confidence 4455433 4678999999999999976533 33 445442 1222 567899999999999999
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCC--CChHHHH---HHHHHhC-C
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTP--TTPTDRM---KAIVEAS-E 216 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp--~t~~eri---~~i~~~a-~ 216 (311)
+--..- .+-++.+.+. +|-+-+|-...... .+..++.+.|. +|.+=-+ .++++.+ +.+.+.. .
T Consensus 162 vTdV~~--------~~~~~~~~e~-~DilQI~A~~~~n~-~LL~~~g~t~k-pV~lKkG~~~s~~e~l~aae~i~~~Gn~ 230 (338)
T d1vr6a1 162 VTEALG--------EDDLPKVAEY-ADIIQIGARNAQNF-RLLSKAGSYNK-PVLLKRGFMNTIEEFLLSAEYIANSGNT 230 (338)
T ss_dssp EEECSS--------GGGHHHHHHH-CSEEEECGGGTTCH-HHHHHHHTTCS-CEEEECCTTCCHHHHHHHHHHHHHTTCC
T ss_pred EEeccc--------hhhhhhhhce-eeeEEechhhccCH-HHHHHhhccCC-cEEecCccccchhhhhhhHHHHHhcCCc
Confidence 875421 1234445554 89999985433333 35566666664 4544322 3444432 3333332 3
Q ss_pred ceEEEEecC--CccCCCCCCCchHHHHHHHHhhcCCCcEEEe----eCCCC--HHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 217 GFVYLVSSI--GVTGARASISGHVQTLLREIKESSTKPVAVG----FGISK--PEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 217 gfiY~vs~~--G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG----fGIst--~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
..+.|.-.. ..+..+..++ + ..+..+|+.++.||++. .|-+. +.-++....+||||++|=+..-- ++
T Consensus 231 ~vilcERG~~t~~~~~~~~lD--~-~~i~~~k~~~~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~Hp~P--~~ 305 (338)
T d1vr6a1 231 KIILCERGIRTFEKATRNTLD--I-SAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEP--EK 305 (338)
T ss_dssp CEEEEECCBCCSCCSSSSBCC--T-THHHHHHHHBSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCG--GG
T ss_pred cceeeeccccccccccccchh--h-cccceeeccccCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeCCCc--cc
Confidence 455554211 1111222222 2 34667778889999883 33321 22344556789999988543221 11
Q ss_pred cC-Cch--hHHHHHHHHHHHHHh
Q 021527 289 AQ-SPE--EGLKELEKFAKSLKS 308 (311)
Q Consensus 289 ~~-~~~--~~~~~~~~~~~~l~~ 308 (311)
+. +.. -.++++++++++++.
T Consensus 306 AlsDg~q~l~~~~~~~ll~~l~~ 328 (338)
T d1vr6a1 306 ALSDGKQSLDFELFKELVQEMKK 328 (338)
T ss_dssp CSSCGGGCBCHHHHHHHHHHHHH
T ss_pred CCCCccccCCHHHHHHHHHHHHH
Confidence 11 111 126677777777764
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.97 E-value=0.25 Score=36.89 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=63.2
Q ss_pred EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhhcC
Q 021527 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKESS 249 (311)
Q Consensus 171 viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~~ 249 (311)
|++.|=-..-...+...+++.|.++... .+..+-+..+.+.....+.+- ...+. +-.+.++++++..
T Consensus 3 ILiVdDd~~~~~~l~~~L~~~g~~v~~a---~~~~eal~~~~~~~~dlillD~~mp~~---------~G~~~~~~i~~~~ 70 (117)
T d2a9pa1 3 ILIVDDEKPISDIIKFNMTKEGYEVVTA---FNGREALEQFEAEQPDIIILDLMLPEI---------DGLEVAKTIRKTS 70 (117)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEE---SSHHHHHHHHHHHCCSEEEECSSCSSS---------CHHHHHHHHHTTC
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHhcCCCEEEeccccCCC---------CccHHHHHHHhCC
Confidence 3444422233455677788889875432 345566666655555554431 11111 2247889998877
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
++||++=.|-++.++..+..+.|||+.++
T Consensus 71 ~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~ 99 (117)
T d2a9pa1 71 SVPILMLSAKDSEFDKVIGLELGADDYVT 99 (117)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHcCCCEEEE
Confidence 89998888888899999999999999865
|
| >d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FAD-linked oxidoreductase family: Methylenetetrahydrofolate reductase domain: Methylenetetrahydrofolate reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.76 E-value=0.53 Score=40.88 Aligned_cols=190 Identities=17% Similarity=0.275 Sum_probs=107.9
Q ss_pred HHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHHHHHH
Q 021527 57 LKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARG-TNFNAILSMLKE 133 (311)
Q Consensus 57 ~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G-~~~~~~~~~i~~ 133 (311)
+++.| .-.|+++++-+=+.....+.+..+.+.|++-|-+ | ||...+..-+. -..+ .+..++++.+++
T Consensus 67 l~~~G-~~~i~Hlt~r~~n~~~l~~~l~~~~~~GI~niLal~G----D~p~~~~~~~~-----~~~~~~~a~~Li~~i~~ 136 (292)
T d1v93a_ 67 IQSLG-LNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRG----DPPRGERVFRP-----HPEGFRYAAELVALIRE 136 (292)
T ss_dssp HHHTT-CCEEEEECCTTSCHHHHHHHHHHHHHTTCCEEEECCC----CCCTTCSSCCC-----CTTSCSSHHHHHHHHHH
T ss_pred HHhCC-CCceeeeeecCchHHHHHHHHHHHHHhCcCeEeeccC----CCCccCcccCC-----cccchhHHHHHHHHHHH
Confidence 44444 5569999998888899999999999999999888 4 22111100000 0000 122344455544
Q ss_pred hhccCCCcEEEEecC--cchhccCHHHHH---HHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCC--eEEEeCCCChH
Q 021527 134 VVPQMSCPIALFTYY--NPILKRGVDNFM---STVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIE--LVLFTTPTTPT 205 (311)
Q Consensus 134 ir~~~~iPiilm~Y~--n~i~~~g~~~fi---~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~--~I~lisp~t~~ 205 (311)
.... ..-+.+-+|- +|-. -..+..+ ..-.++|++-++-- =...+...+|.+.+++.|++ +++.+.|-++.
T Consensus 137 ~~~~-~~~ig~a~~Peghp~~-~~~~~~~~~l~~K~~aGA~fiiTQ~~FD~~~~~~~~~~~r~~gi~~Pi~~Gi~p~~s~ 214 (292)
T d1v93a_ 137 RYGD-RVSVGGAAYPEGHPES-ESLEADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIGIPILPGIMPVTSY 214 (292)
T ss_dssp HHGG-GSEEEEEECTTCCTTC-SSHHHHHHHHHHHHHTTCSEEEEEECSSHHHHHHHHHHHHHTTCCSCEEEEECCCCCH
T ss_pred hcCC-CcccccccCCCCCccc-hhHHHHHHHHHHHHHhccCeEEEeeeccHHHHHHHHHHHHHhccCCCccccccchhHH
Confidence 4322 2334555554 3322 2223333 34466999976542 23346678899999999884 55556777776
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEE-EeeCCC-CHHHHHHHHHcCCcEE
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVA-VGFGIS-KPEHVQQVAGWGADGV 276 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~-vGfGIs-t~e~v~~v~~~GADGv 276 (311)
.++..+.+. .|+ .+|.. +++++.+..+-|=. --+||. ..++++++++.|++|+
T Consensus 215 ~~l~~~~~~----------~Gv-----~iP~~---i~~~l~~~~~~~~~~~~~gi~~a~~~~~~L~~~gv~Gi 269 (292)
T d1v93a_ 215 RQLRRFTEV----------CGA-----SIPGP---LLAKLERHQDDPKAVLEIGVEHAVRQVAELLEAGVEGV 269 (292)
T ss_dssp HHHHHHHHH----------HCC-----CCCHH---HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHhc----------cCC-----CchHH---HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 766665441 122 34554 45555443332210 123432 2478899999999998
|
| >d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.76 E-value=0.18 Score=43.40 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=71.1
Q ss_pred HHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHHhCC--
Q 021527 159 FMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVEASE-- 216 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~a~-- 216 (311)
-.+.+++.|++-+|+..- ..+....=...+.++|+.+|+-+.-+. ++| ++.......
T Consensus 77 Sa~mL~d~G~~~viiGHSERR~~f~Etd~~i~~K~~~al~~gl~pIlCVGEt~-~er~~g~t~~~l~~Ql~~~l~~~~~~ 155 (246)
T d1r2ra_ 77 SPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKL-DEREAGITEKVVFEQTKVIADNVKDW 155 (246)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCH-HHHHTTCHHHHHHHHHHHHHHTCSCG
T ss_pred cHHHHHHHhhhhhhhcchhhhhhcCCCHHHHHHHHHHhhccCceEEEEecCcc-ccccccchhhhHHHHHHHHhhccccc
Confidence 456788889999888631 111122234456778998888776432 333 112211111
Q ss_pred -c-eEEEEecCC-ccCCCCCCCchHHHHHHHHhhc----C------CCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHh
Q 021527 217 -G-FVYLVSSIG-VTGARASISGHVQTLLREIKES----S------TKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAM 282 (311)
Q Consensus 217 -g-fiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~----~------~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSai 282 (311)
. .+-|.+.-. .||.. ..+.+..+....+|+. . ++||+.|+-|+ ++++++++. -+.||+-||+|=
T Consensus 156 ~~iiiAYEPvWAIGTG~~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~-~~N~~~i~~~~~vDG~LVGgAS 233 (246)
T d1r2ra_ 156 SKVVLAYEPVWAIGTGKT-ATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVT-GATCKELASQPDVDGFLVGGAS 233 (246)
T ss_dssp GGEEEEECCGGGSSSSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCC-TTTHHHHHTSTTCCEEEESGGG
T ss_pred ceEEEecCceeeccCCCC-ccchhhhhhHHHHHHHHHHhhhHhhcCcccEEecCCCC-HHHHHHHhcCCCCCeEEeehhh
Confidence 1 233332211 35543 2233444544444433 1 47999999997 799999873 348999999987
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 234 L~ 235 (246)
T d1r2ra_ 234 LK 235 (246)
T ss_dssp GS
T ss_pred CC
Confidence 65
|
| >d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=1.1 Score=38.26 Aligned_cols=123 Identities=11% Similarity=-0.020 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+++++.++.++++--|+. -...++.+...++++.+... ++++.+|.+|=.++-.. .+.+
T Consensus 17 ~~~kL~~~m~~Kks~L~v--ALD~~~~~eal~li~~l~~~-v~~~Kig~~lf~~~G~~------------------~~~~ 75 (267)
T d1dqwa_ 17 VAAKLFNIMHEKQTNLCA--SLDVRTTKELLELVEALGPK-ICLLKTHVDILTDFSME------------------GTVK 75 (267)
T ss_dssp HHHHHHHHHHHHTCCEEE--ECCCSSHHHHHHHHHHHGGG-CSEEEECGGGCSSCCTT------------------TTHH
T ss_pred HHHHHHHHHHhccCCEEE--EeccCCHHHHHHHHHHhCCc-ceEEEECHHHHhhcChH------------------HHHH
Confidence 344444444333333433 34678999999999999876 99999999984432211 1123
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCC
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVPL-EETESLQKEAMKNKIE 194 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~ 194 (311)
.+..+.+..+.+|++..=++++-.+ ..+.++. ....|+|.+.++-..- +-...+.+.+++.+..
T Consensus 76 ~~~~~~~~~~~~IflDlK~~DIpnT-v~~a~~a~~~~~~~~~d~vTvh~~~G~~~l~~~~~~~~~~~~~ 143 (267)
T d1dqwa_ 76 PLKALSAKYNFLLFEDRKFADIGNT-VKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKE 143 (267)
T ss_dssp HHHHHHHHHTCEEEEEEEECCCHHH-HHHHHHSTTTCHHHHCSEEEEESTTCTHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhccCceEecCccccCCcHH-HHHHHHHHHHHhhcCCcEEEecCcCCHHHHHHHHHHhhccCCc
Confidence 4444444457888887655544221 0111221 2346789998864443 3345566777666654
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.21 Score=37.60 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCC
Q 021527 180 ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGI 259 (311)
Q Consensus 180 e~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGI 259 (311)
-...+...++++|.++... .+..+-++.+.+.....+.+ ... ..+ .+-.++++++|+..++|+++=.|-
T Consensus 14 ~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~dlii~-D~~-mp~------~~G~~~~~~~r~~~~~pii~lt~~ 82 (121)
T d1xhfa1 14 TRNTLKSIFEAEGYDVFEA---TDGAEMHQILSEYDINLVIM-DIN-LPG------KNGLLLARELREQANVALMFLTGR 82 (121)
T ss_dssp HHHHHHHHHHTTTCEEEEE---SSHHHHHHHHHHSCCSEEEE-CSS-CSS------SCHHHHHHHHHHHCCCEEEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEE---CChHHHHHHHHhcCCCEEEe-ecc-cCC------ccCcHHHHHHHhcCCCcEEEEECC
Confidence 3556778888899875533 34556666665544444333 221 111 122478888988888999998888
Q ss_pred CCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 260 SKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 260 st~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
++.++..+..++|||+.++ |.+. +++.+..+++.+
T Consensus 83 ~~~~~~~~a~~~Ga~dyl~-----KP~~----~~~L~~~v~~~l 117 (121)
T d1xhfa1 83 DNEVDKILGLEIGADDYIT-----KPFN----PRELTIRARNLL 117 (121)
T ss_dssp CSHHHHHHHHHHTCSEEEE-----SSCC----HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEe-----CCCC----HHHHHHHHHHHH
Confidence 9999999999999999865 5442 344455555544
|
| >d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FAD-linked oxidoreductase family: Methylenetetrahydrofolate reductase domain: Methylenetetrahydrofolate reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.67 E-value=1.2 Score=38.52 Aligned_cols=203 Identities=11% Similarity=0.202 Sum_probs=122.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE-ecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF-TYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm-~Y~n~i~~~ 154 (311)
.+.+.+.++.|.+.+.|.|-+- ||| .|..-...+...+.+++ .+++.+.- +.-+ ..+.
T Consensus 28 ~~~l~~~~~~L~~~~p~fisVT--------~~~-----------~g~~~~~tl~~a~~l~~-~G~~~i~Hlt~r~-~n~~ 86 (292)
T d1v93a_ 28 EEALFRTLEELKAFRPAFVSIT--------YGA-----------MGSTRERSVAWAQRIQS-LGLNPLAHLTVAG-QSRK 86 (292)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEC--------CCG-----------GGTTHHHHHHHHHHHHH-TTCCEEEEECCTT-SCHH
T ss_pred HHHHHHHHHHHhcCCCCEEEec--------CCC-----------CCccchhHHHHHHHHHh-CCCCceeeeeecC-chHH
Confidence 4567788999999899998773 231 12333455677888875 45554443 3222 3344
Q ss_pred CHHHHHHHHHHcCCcEEEe--cCCChh------------hHHHHHHHHHHc---CCCeEEEe----CCCCh--HHHHHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVV--PDVPLE------------ETESLQKEAMKN---KIELVLFT----TPTTP--TDRMKAI 211 (311)
Q Consensus 155 g~~~fi~~~~~aGadGvii--pDlp~e------------e~~~~~~~~~~~---gi~~I~li----sp~t~--~eri~~i 211 (311)
+++..+..+.+.|++-+++ .|-|-. .+..+.+.+++. ++..-... .|..+ ...++.+
T Consensus 87 ~l~~~l~~~~~~GI~niLal~GD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~ig~a~~Peghp~~~~~~~~~~~l 166 (292)
T d1v93a_ 87 EVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHF 166 (292)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCCCCTTCSSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCeEeeccCCCCccCcccCCcccchhHHHHHHHHHHHhcCCCcccccccCCCCCccchhHHHHHHHH
Confidence 6678888999999999888 355421 244555555442 23222222 33332 1222222
Q ss_pred H-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEee-CCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 212 V-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGF-GISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 212 ~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGf-GIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
. +...|.-|++|-. -++ ..+.++++++|+. .++||++|. ++.+..++..+.+. -||-|-..+++.++
T Consensus 167 ~~K~~aGA~fiiTQ~-------~FD~~~~~~~~~~~r~~gi~~Pi~~Gi~p~~s~~~l~~~~~~--~Gv~iP~~i~~~l~ 237 (292)
T d1v93a_ 167 KAKVEAGLDFAITQL-------FFNNAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEV--CGASIPGPLLAKLE 237 (292)
T ss_dssp HHHHHTTCSEEEEEE-------CSSHHHHHHHHHHHHHTTCCSCEEEEECCCCCHHHHHHHHHH--HCCCCCHHHHHHHH
T ss_pred HHHHHhccCeEEEee-------eccHHHHHHHHHHHHHhccCCCccccccchhHHHHHHHHHhc--cCCCchHHHHHHHH
Confidence 2 2334555555422 233 4578889998885 689999986 47888888877654 68888888989886
Q ss_pred hcCC-chh----HHHHHHHHHHHHHh
Q 021527 288 EAQS-PEE----GLKELEKFAKSLKS 308 (311)
Q Consensus 288 ~~~~-~~~----~~~~~~~~~~~l~~ 308 (311)
...+ +++ +++...+++++|.+
T Consensus 238 ~~~~~~~~~~~~gi~~a~~~~~~L~~ 263 (292)
T d1v93a_ 238 RHQDDPKAVLEIGVEHAVRQVAELLE 263 (292)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 222 34555566667654
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=94.66 E-value=0.16 Score=44.14 Aligned_cols=124 Identities=17% Similarity=0.216 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCC----------------ChHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLA----------------DGPVIQA 112 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~a----------------DGp~Iq~ 112 (311)
.+.+.....+...+..+..-+.++.++. .++++.+.++|+|.+-+..-+..... .|+.+..
T Consensus 151 ~~~~~~~~v~~~~~~p~~vkl~~~~~~~---~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~ 227 (311)
T d1ep3a_ 151 VAAALVKACKAVSKVPLYVKLSPNVTDI---VPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKP 227 (311)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSSCS---HHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHH
T ss_pred HHHHHHHHHHhccCCCeeeeecccccch---HHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccc
Confidence 3555556566666677777777776654 56778888999999998654422111 2444433
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC------hhh-HHHHH
Q 021527 113 AATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP------LEE-TESLQ 185 (311)
Q Consensus 113 a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp------~ee-~~~~~ 185 (311)
. .++.++++++.+++||+..|= +. ..++..+.+ .+|||+|-+.-.- +.+ ..++.
T Consensus 228 ~-------------~l~~i~~i~~~~~ipIig~GG---I~--s~~Da~~~i-~~GAd~V~ig~~~~~~P~i~~~I~~~L~ 288 (311)
T d1ep3a_ 228 V-------------ALKLIHQVAQDVDIPIIGMGG---VA--NAQDVLEMY-MAGASAVAVGTANFADPFVCPKIIDKLP 288 (311)
T ss_dssp H-------------HHHHHHHHHTTCSSCEEECSS---CC--SHHHHHHHH-HHTCSEEEECTHHHHCTTHHHHHHHHHH
T ss_pred h-------------hHHHHHHHhhhcceeEEEeCC---cC--CHHHHHHHH-HcCCCEEEecHHHHcCChHHHHHHHHHH
Confidence 2 256888999999999998652 21 124444544 6899999994211 122 23455
Q ss_pred HHHHHcCCC
Q 021527 186 KEAMKNKIE 194 (311)
Q Consensus 186 ~~~~~~gi~ 194 (311)
+.+.++|++
T Consensus 289 ~~m~~~g~~ 297 (311)
T d1ep3a_ 289 ELMDQYRIE 297 (311)
T ss_dssp HHHHHTTCS
T ss_pred HHHHHcCCC
Confidence 555666654
|
| >d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Entamoeba histolytica [TaxId: 5759]
Probab=94.64 E-value=0.23 Score=42.95 Aligned_cols=123 Identities=18% Similarity=0.235 Sum_probs=72.8
Q ss_pred HHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHHhC---
Q 021527 159 FMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVEAS--- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~a--- 215 (311)
-.+.+++.|++.+|+..- ..+...+=...+-++|+.+|+-+.-+. ++| ++.+...-
T Consensus 85 Sa~mLkd~G~~yviiGHSERR~~f~Etd~~i~~K~~~al~~gl~pIlCIGE~~-~~re~~~~~~~~~~Ql~~~~~~~~~~ 163 (260)
T d1m6ja_ 85 HVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETE-AQRIANQTEEVVAAQLKAINNAISKE 163 (260)
T ss_dssp BHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCH-HHHHTTCHHHHHHHHHHHHHHHSCTG
T ss_pred cHHHHHhhCcceeeecchhhhhhhcccHHHHHHHHHHHHhcCCcEEEEeccch-hhhhcCchHHHHHHHHHhhhcccchh
Confidence 456778889999999631 011122223446677998888776543 222 22222211
Q ss_pred ---CceEEEEecCC-ccCCCCCCCchHHHHHHHHhhc----C------CCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhh
Q 021527 216 ---EGFVYLVSSIG-VTGARASISGHVQTLLREIKES----S------TKPVAVGFGISKPEHVQQVAG-WGADGVIVGS 280 (311)
Q Consensus 216 ---~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~----~------~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGS 280 (311)
.-.|-|.++-. .||.. ..+....+....+|+. . ++||+.|+.|+ ++++.++.. -+.||+-||+
T Consensus 164 ~~~~iiIAYEPvWAIGTG~~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~~v~ilYGGSV~-~~N~~~i~~~~~vDG~LVGg 241 (260)
T d1m6ja_ 164 AWKNIILAYEPVWAIGTGKT-ATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVN-PANCNELAKKADIDGFLVGG 241 (260)
T ss_dssp GGGGEEEEECCGGGSSSSCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCC-TTTHHHHHTSTTCCEEEESG
T ss_pred hhhccEEeccceecccCCcc-cChHHHHHHHHHHHHHHHhhcchhhcCCCcEEEcCCCC-HhHHHHHhCCCCCCeEEech
Confidence 11233333221 35643 2344455555555542 1 48999999997 799999984 4589999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
|=.+
T Consensus 242 ASL~ 245 (260)
T d1m6ja_ 242 ASLD 245 (260)
T ss_dssp GGGS
T ss_pred HhcC
Confidence 9776
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=94.62 E-value=0.3 Score=36.50 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeC
Q 021527 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFG 258 (311)
Q Consensus 181 ~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfG 258 (311)
...+...+...|.+... + .+..+-+..+.+.....+.+- ..-|.+ -.++++++|+.. ++|+++=.|
T Consensus 14 ~~~l~~~L~~~g~~v~~-a--~~g~eal~~~~~~~~dlillD~~mP~~~---------G~el~~~lr~~~~~~pvi~lt~ 81 (119)
T d1peya_ 14 RILLNEVFNKEGYQTFQ-A--ANGLQALDIVTKERPDLVLLDMKIPGMD---------GIEILKRMKVIDENIRVIIMTA 81 (119)
T ss_dssp HHHHHHHHHHTTCEEEE-E--SSHHHHHHHHHHHCCSEEEEESCCTTCC---------HHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHHHcCCEEEE-e--CCHHHHHHHHHhCCCCEEEEeccCCCCC---------HHHHHHHHHHhCCCCcEEEEec
Confidence 44567778888987543 2 344566666655555665552 222222 247888888754 689999999
Q ss_pred CCCHHHHHHHHHcCCcEEEE
Q 021527 259 ISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIV 278 (311)
-.+.+.+.+..+.||++.+.
T Consensus 82 ~~~~~~~~~a~~~Ga~~yl~ 101 (119)
T d1peya_ 82 YGELDMIQESKELGALTHFA 101 (119)
T ss_dssp SCCHHHHHHHHHTTCCEEEE
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999999865
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.59 E-value=0.12 Score=44.57 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC--------
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG-------- 121 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G-------- 121 (311)
+++.++++++.| +-+.+.+..|- ++..++...+.+.|.+.|.+--|-+++ .-++..+..+ .|
T Consensus 97 ~~~f~~~~~~~G---v~GliipDLP~-eE~~~~~~~~~~~gl~~I~lvaPtt~~----~ri~~i~~~s--~gFiY~vs~~ 166 (248)
T d1geqa_ 97 VRNFLAEAKASG---VDGILVVDLPV-FHAKEFTEIAREEGIKTVFLAAPNTPD----ERLKVIDDMT--TGFVYLVSLY 166 (248)
T ss_dssp HHHHHHHHHHHT---CCEEEETTCCG-GGHHHHHHHHHHHTCEEEEEECTTCCH----HHHHHHHHHC--SSEEEEECCC
T ss_pred HHHHhhhhcccC---eeEEeccCCcH-HHHHHHHhhccccCcceEEEecccchh----HHHHHHHhcC--CCeEEEEecc
Confidence 344444444333 34445666653 566677777777888888887666543 4555443332 33
Q ss_pred -CC------HHHHHHHHHHhhccCCCcEEEEecCcchhccCH--HHHHHHHHHcCCcEEEecC
Q 021527 122 -TN------FNAILSMLKEVVPQMSCPIALFTYYNPILKRGV--DNFMSTVRDIGIRGLVVPD 175 (311)
Q Consensus 122 -~~------~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~--~~fi~~~~~aGadGviipD 175 (311)
+| .+++.+.++++|+.+++|+.+- .|+ .+-++.+.+.|+||+++..
T Consensus 167 GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vG--------FGI~~~e~v~~~~~~~ADGvIVGS 221 (248)
T d1geqa_ 167 GTTGAREEIPKTAYDLLRRAKRICRNKVAVG--------FGVSKREHVVSLLKEGANGVVVGS 221 (248)
T ss_dssp -------CCCHHHHHHHHHHHHHCSSCEEEE--------SCCCSHHHHHHHHHTTCSEEEECH
T ss_pred cccccchhhhhhHHHHHHHHhhhcccceeee--------cccCCHHHHHHHHhcCCCEEEECH
Confidence 21 1467889999999999998773 133 2456677778999999984
|
| >d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 2-isopropylmalate synthase LeuA, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.58 E-value=0.64 Score=39.59 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=26.7
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCC
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDP 103 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP 103 (311)
-+.++-+++++.|.++|+|.||+|+|+..|
T Consensus 30 ~~~~~k~~i~~~L~~aGv~~IEvG~p~~s~ 59 (310)
T d1sr9a2 30 MSPARKRRMFDLLVRMGYKEIEVGFPSASQ 59 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECTTTCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCCH
Confidence 456888899999999999999999998765
|
| >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Probable two-component system transcriptional regulator Rv1626 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.56 E-value=0.077 Score=43.09 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=57.1
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.-.|++-+++- -|-.|| ++.++++|+..++||++++-+ +-..+
T Consensus 38 ~eal~~~~~~~pDlvllDi~--mP~~dG--------------------~e~~~~ir~~~~~pIi~lTa~------~~~~~ 89 (190)
T d1s8na_ 38 QEAVELAELHKPDLVIMDVK--MPRRDG--------------------IDAASEIASKRIAPIVVLTAF------SQRDL 89 (190)
T ss_dssp HHHHHHHHHHCCSEEEEESS--CSSSCH--------------------HHHHHHHHHTTCSCEEEEEEG------GGHHH
T ss_pred HHHHHHHhcCCCCEEEEecc--ccCcch--------------------HHHHHHHHhcCCCCEEEEeCC------CCHHH
Confidence 56667777788999999864 466788 567888887778999998743 34567
Q ss_pred HHHHHHcCCcEEEecCCChhhH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~ 181 (311)
+..+.++|+++++.=...+++.
T Consensus 90 ~~~al~~Ga~~yl~KP~~~~~L 111 (190)
T d1s8na_ 90 VERARDAGAMAYLVKPFSISDL 111 (190)
T ss_dssp HHTTGGGSCEEEEEESCCHHHH
T ss_pred HHHHHHcCCCEeccCCCCHHHH
Confidence 7889999999999976666653
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.53 E-value=0.089 Score=45.97 Aligned_cols=190 Identities=14% Similarity=0.196 Sum_probs=106.5
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPi 142 (311)
-+|+ |.| |.. ...+.++.|.++|+|++=|.+-..++ -. ..+.++.++++.+. .+.|+
T Consensus 22 KIIa--TiG-Pas-~~~e~l~~li~aG~dv~RlN~SHg~~------~~------------h~~~i~~iR~~~e~~~G~~v 79 (265)
T d1a3xa2 22 SIIG--TIG-PKT-NNPETLVALRKAGLNIVRMNFSHGSY------EY------------HKSVIDNARKSEELYPGRPL 79 (265)
T ss_dssp EEEE--ECC-TTT-CSHHHHHHHHHHTEEEEEEETTSCCH------HH------------HHHHHHHHHHHHHHCCCSCC
T ss_pred eEEE--eeC-CCC-CCHHHHHHHHHcCCCEEEEECCCCCH------HH------------HHHHHHHHHHHhhhccCCce
Confidence 3544 445 443 34688999999999999998655442 11 12345566665443 45665
Q ss_pred EEEecC-cchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHcCC--CeEEEeCCCChHHHHHHHHHhCCce
Q 021527 143 ALFTYY-NPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKNKI--ELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 143 ilm~Y~-n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~gi--~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
.++.-. .|...-.-.+.++.+.+.|+|-+.+.=.- .++..++++.+++.|- ..+.=+--...-+.+.+|.+.++|.
T Consensus 80 ~i~~dl~~p~ltekD~~di~~a~~~~vD~ialSFVrs~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~sDgi 159 (265)
T d1a3xa2 80 AIALDTKGPALSEKDKEDLRFGVKNGVHMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGV 159 (265)
T ss_dssp BCEEECCCCSSCHHHHHHHHHHHHTTCCEECCTTCCSHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHHCSEE
T ss_pred eeeccccchhcccchHHHHHHhhhcccceEeeccCCCHHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHHHHhhccee
Confidence 554322 23333223345667899999988665222 2557778888877653 3333332222236688888888886
Q ss_pred EEEEecCCccCCCCC---CCchHHHHHHHHhhcCCCcEEEeeCC---------CCHHHH---HHHHHcCCcEEEEh
Q 021527 219 VYLVSSIGVTGARAS---ISGHVQTLLREIKESSTKPVAVGFGI---------SKPEHV---QQVAGWGADGVIVG 279 (311)
Q Consensus 219 iY~vs~~G~TG~~~~---~~~~~~~~l~~vk~~~~~Pv~vGfGI---------st~e~v---~~v~~~GADGvIVG 279 (311)
...- |--|...+ ++.--...++..++ .++|+++..-+ -|...+ .....-|+||+..-
T Consensus 160 mIaR---GDLgvei~~e~vp~~Qk~Ii~~~~~-~gkpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~vmLs 231 (265)
T d1a3xa2 160 MVAR---GDLGIEIPAPEVLAVQKKLIAKSNL-AGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLS 231 (265)
T ss_dssp EEEH---HHHHHHSCHHHHHHHHHHHHHHHHH-HTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEECCS
T ss_pred EEEc---cchhhhccHHHHHHHHHHHHHHHHH-cCCcEEehhhhhhhhccCCCCcHHHHHHHHHHHHhCCCEEEEc
Confidence 4331 21121111 11111223333333 47999997744 344444 44456699999775
|
| >d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.45 E-value=0.068 Score=46.19 Aligned_cols=123 Identities=17% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHHHHcCCcEEEecCC----Chhh----HHHHHHHHHHcCCCeEEEeCCCChHHH--------HH----HHHHhC---
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEE----TESLQKEAMKNKIELVLFTTPTTPTDR--------MK----AIVEAS--- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee----~~~~~~~~~~~gi~~I~lisp~t~~er--------i~----~i~~~a--- 215 (311)
-...+++.|++.+|+..- -+.| ...=...+.++|+.+|+-+.-+ -++| +. ......
T Consensus 78 Sa~mLkd~G~~yviIGHSERR~~f~Etd~~i~~K~~~al~~gl~pIlCVGEt-le~r~~~~~~~~~~~Ql~~~l~~~~~~ 156 (247)
T d1neya_ 78 SVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGET-LEEKKAGKTLDVVERQLNAVLEEVKDF 156 (247)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTTCCCHHHHHHHHHHHHHTTCEEEEEECCC-HHHHHTTCHHHHHHHHHHHHHHHCCCC
T ss_pred hHHHHHhhccchhhhcchhhhhhccchHHHHHHHHHHHhhcCceEEEEecch-hhhhccccchhhhHHHHHhhhcccccc
Confidence 456788899999999631 0112 2222455778899988877653 2333 11 111111
Q ss_pred Cc-eEEEEecCC-ccCCCCCCCchHHHHHHHHhhcC----------CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHh
Q 021527 216 EG-FVYLVSSIG-VTGARASISGHVQTLLREIKESS----------TKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAM 282 (311)
Q Consensus 216 ~g-fiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~~----------~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSai 282 (311)
.. .|-|.+.-. .||.. ..+.+..+..+.+|+.. ++||+.|+.|+ ++++++++.. +.||+-||+|=
T Consensus 157 ~~iiIAYEPvWAIGtG~~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~iLYGGSV~-~~N~~~i~~~~~iDG~LVGgAS 234 (247)
T d1neya_ 157 TNVVVAYEPVWAIGTGLA-ATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSAN-GSNAVTFKDKADVDGFLVGGAS 234 (247)
T ss_dssp TTEEEEECCGGGTTTSCC-CCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCC-TTTGGGGTTCTTCCEEEESGGG
T ss_pred cceEEEecchhcccCCcc-cChhhhhhhhHHHHHHHHHhhhhhhcccCcEEEeCCCC-HHHHHHHhcCCCCCeEEeehHh
Confidence 11 233333221 36643 33444555555555422 47999999997 6999988854 36999999986
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 235 L~ 236 (247)
T d1neya_ 235 LK 236 (247)
T ss_dssp GS
T ss_pred CC
Confidence 54
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.41 Score=35.71 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCC
Q 021527 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGI 259 (311)
Q Consensus 181 ~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGI 259 (311)
...+...++..|.++.. + .+..+-+..+.+.....+.+ ... ..+ .+-.++++++|+. .++|+++=.+-
T Consensus 13 ~~~l~~~L~~~G~~v~~-a--~~g~eal~~l~~~~~dliil-D~~-mP~------~~G~e~~~~i~~~~~~~pvi~lt~~ 81 (119)
T d2pl1a1 13 RHHLKVQIQDAGHQVDD-A--EDAKEADYYLNEHIPDIAIV-DLG-LPD------EDGLSLIRRWRSNDVSLPILVLTAR 81 (119)
T ss_dssp HHHHHHHHHHTTCEEEE-E--SSHHHHHHHHHHSCCSEEEE-CSC-CSS------SCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHHHHCCCEEEE-E--CCHHHHHHHHHhcccceeeh-hcc-CCC------chhHHHHHHHHhcCcccceEeeecc
Confidence 44567778888976442 2 34456666555544444333 211 111 1235789999886 47899999999
Q ss_pred CCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 260 SKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 260 st~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
.+.++..+..+.|||+.+. |.+. .++.++.++..+
T Consensus 82 ~~~~~~~~a~~~Ga~~yl~-----KP~~----~~~L~~~v~~~l 116 (119)
T d2pl1a1 82 ESWQDKVEVLSAGADDYVT-----KPFH----IEEVMARMQALM 116 (119)
T ss_dssp CCHHHHHHHHHTTCSEEEE-----SSCC----HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEE-----CCCC----HHHHHHHHHHHH
Confidence 9999999999999999854 5442 234445555444
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=94.36 E-value=0.37 Score=36.98 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=63.2
Q ss_pred EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhhc-
Q 021527 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKES- 248 (311)
Q Consensus 171 viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~- 248 (311)
+|+=|=| .....+...+++.|.++.. + .+..+-+..+.+.....+.+- ...+.. -.++++.+|+.
T Consensus 5 LiVDD~~-~~~~~l~~~L~~~g~~v~~-a--~~~~eal~~~~~~~~dlil~D~~~p~~~---------G~~~~~~ir~~~ 71 (139)
T d1w25a1 5 LVVDDIE-ANVRLLEAKLTAEYYEVST-A--MDGPTALAMAARDLPDIILLDVMMPGMD---------GFTVCRKLKDDP 71 (139)
T ss_dssp EEECSST-THHHHHHHHHHHTTCEEEE-E--SSHHHHHHHHHHHCCSEEEEESCCSSSC---------HHHHHHHHHHST
T ss_pred EEEECCH-HHHHHHHHHHHHCCCEEEE-E--ccchhhhhhhhcccceeeeeeccccCCC---------chHHHHHhhhcc
Confidence 4443433 4456678888899986432 2 345666666656555555442 121222 24567777764
Q ss_pred --CCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 249 --STKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 249 --~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.++||++=.|-.+.+...+.+++|||..+.
T Consensus 72 ~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~ 103 (139)
T d1w25a1 72 TTRHIPVVLITALDGRGDRIQGLESGASDFLT 103 (139)
T ss_dssp TTTTSCEEEEECSSCHHHHHHHHHHTCCEEEE
T ss_pred cccCCCEEEEEcCCCHHHHHHHHHcCCCEEEE
Confidence 368999999999999999999999999976
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.19 E-value=0.15 Score=44.60 Aligned_cols=123 Identities=14% Similarity=0.131 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCC-----C------CC-----------CC
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYS-----D------PL-----------AD 106 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pfs-----D------P~-----------aD 106 (311)
.+.+..+++++.-+..++.=+.++.+ ...++++.+.++|+|.+-+.+.+. + |. ..
T Consensus 158 ~~~~i~~~v~~~~~~pv~vKl~~~~~---~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~s 234 (312)
T d1gtea2 158 LVRNICRWVRQAVQIPFFAKLTPNVT---DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVS 234 (312)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSS---CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEE
T ss_pred HHHHHHHHHhhccCCceeecccccch---hHHHHHHHHHHhcccceEEEeeccccccccccccccccccccccccccccc
Confidence 46777777777666666666654444 456778888999999998754321 1 11 12
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--------CCC
Q 021527 107 GPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--------DVP 177 (311)
Q Consensus 107 Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--------Dlp 177 (311)
|+.+.. ..+++++++++.. ++||+..|=. . . .+.+.++..+|||+|-+. ++
T Consensus 235 G~~i~~-------------~al~~v~~~~~~~~~ipIi~~GGI---~--~-~~d~~~~l~aGA~~Vqv~ta~~~~G~~~- 294 (312)
T d1gtea2 235 GTAIRP-------------IALRAVTTIARALPGFPILATGGI---D--S-AESGLQFLHSGASVLQVCSAVQNQDFTV- 294 (312)
T ss_dssp SGGGHH-------------HHHHHHHHHHHHSTTCCEEEESSC---C--S-HHHHHHHHHTTCSEEEESHHHHTSCTTH-
T ss_pred CcCcch-------------hhHHHHHHHHHHcCCCcEEEEcCC---C--C-HHHHHHHHHcCCCeeEECHhhhccChHH-
Confidence 343332 2356888888765 5999887521 1 1 233444557899999883 22
Q ss_pred hhh-HHHHHHHHHHcCCC
Q 021527 178 LEE-TESLQKEAMKNKIE 194 (311)
Q Consensus 178 ~ee-~~~~~~~~~~~gi~ 194 (311)
+++ .+++.+.+.++|++
T Consensus 295 i~~i~~~L~~~m~~~g~~ 312 (312)
T d1gtea2 295 IQDYCTGLKALLYLKSIE 312 (312)
T ss_dssp HHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 123 34567777777764
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=94.12 E-value=0.18 Score=44.97 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCccEEEEE-----eCCCCChhhHHHHHHHHHHCCCCEEEEc-CCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 50 LAETFTRLKKQGKVALIPYI-----TAGDPDLSTTAEALKLLDSCGSDIIELG-VPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi-----~~G~P~~~~~~e~~~~L~~~GaD~IElG-~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
+.+.++..++.....++.=+ ..|..+.+...+.++.|++.|+|.+++. -.+..|-..- ..|..
T Consensus 196 ~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~-----------~~~~~ 264 (337)
T d1z41a1 196 LREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINV-----------FPGYQ 264 (337)
T ss_dssp HHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCC-----------CTTTT
T ss_pred HHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCccccccccccccccccc-----------CCccc
Confidence 45566677666544555444 3455677899999999999999999992 2222221110 01233
Q ss_pred HHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcC-CcEEEe
Q 021527 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIG-IRGLVV 173 (311)
Q Consensus 124 ~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG-adGvii 173 (311)
.++.+.+|+.+++||+.-+-++. -+..+.+.+.| +|.|-+
T Consensus 265 ----~~~~~~ik~~~~~pvi~~G~i~~------~~~ae~~l~~g~~D~V~~ 305 (337)
T d1z41a1 265 ----VSFAEKIREQADMATGAVGMITD------GSMAEEILQNGRADLIFI 305 (337)
T ss_dssp ----HHHHHHHHHHHCCEEEECSSCCS------HHHHHHHHHTTSCSEEEE
T ss_pred ----HHHHHHHHHhcCceEEEeCCcCC------HHHHHHHHHCCCcceehh
Confidence 24677888888999988664431 24566666666 898877
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=94.08 E-value=1.1 Score=36.96 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHH-----HHHcC
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATR-----SLARG 121 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~-----Al~~G 121 (311)
++.+-+.|.++.++++..+++ -++|+ =-++..+++|.|.+=+. |--+-.++-. -+..+
T Consensus 5 r~e~~~~lr~~l~~~~~l~~~--g~~d~------lsAklae~aGfdai~~~---------~~g~~~s~g~~~~~g~l~~~ 67 (197)
T d2p10a1 5 RSELVDRFQKKIRAGEPIIGG--GAGTG------LSAKSEEAGDIDLIVIY---------NSGRYRMAGRGSLAGLLAYG 67 (197)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE--EESSH------HHHHHHHHTTCSEEEEC---------HHHHHHHTTCCGGGGGBTEE
T ss_pred HHHHHHHHHHHHhCCCCEEEc--ccccH------HHHHHHHHcCCCEEEEe---------cHHHHHHcCCcccccccChh
Confidence 344556677766676655543 34454 45667789999999873 1111000000 00011
Q ss_pred CCHHHHHHHHHHhhcc-CCCcEEEEe--cCcchhccCHHHHHHHHHHcCCcEEEecCCC----------hhh-------H
Q 021527 122 TNFNAILSMLKEVVPQ-MSCPIALFT--YYNPILKRGVDNFMSTVRDIGIRGLVVPDVP----------LEE-------T 181 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~-~~iPiilm~--Y~n~i~~~g~~~fi~~~~~aGadGviipDlp----------~ee-------~ 181 (311)
...+..+++.+++... .++||++-. |-|+ .++.+.++.+.++|+.|+.+++-- .|| .
T Consensus 68 d~~~~~~~~a~~i~~~v~~iPviaD~dG~g~~---~nv~rtv~~~~~aG~agI~~~pk~g~~~g~~~~~~e~a~~~~~~~ 144 (197)
T d2p10a1 68 NANQIVVDMAREVLPVVRHTPVLAGVNGTDPF---MVMSTFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQE 144 (197)
T ss_dssp EHHHHHHHHHHHHGGGCSSSCEEEEECTTCTT---CCHHHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCceEEecCCCCcc---hhHHHHHHHHHHcCCeEEeccccccCccchhhhhHHHHHHHhccC
Confidence 1123446677777665 469998874 5442 357889999999999999886421 111 1
Q ss_pred HHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 182 ESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 182 ~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
.++.-.++...+-. ..-....+|.+.+++..-..||.
T Consensus 145 ~d~liiARtda~~~---~g~~~Ai~Ra~ay~eAGAD~i~~ 181 (197)
T d2p10a1 145 VEMIAEAHKLDLLT---TPYVFSPEDAVAMAKAGADILVC 181 (197)
T ss_dssp HHHHHHHHHTTCEE---CCEECSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHhhhhh---ccHHHHHHHHHHHHHcCCCEEEE
Confidence 13333444443321 12223368888887776666665
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=94.06 E-value=0.32 Score=36.40 Aligned_cols=96 Identities=8% Similarity=0.056 Sum_probs=57.0
Q ss_pred EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhhc-
Q 021527 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKES- 248 (311)
Q Consensus 171 viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~- 248 (311)
|++.|=-..-...+...+...|.+.... .+..+-+..+.+....++.+- ..-+. +-.++++++|+.
T Consensus 4 ILiVDD~~~~~~~l~~~L~~~g~~v~~a---~~~~~al~~~~~~~~dlil~D~~mp~~---------dG~el~~~ir~~~ 71 (123)
T d1mb3a_ 4 VLIVEDNELNMKLFHDLLEAQGYETLQT---REGLSALSIARENKPDLILMDIQLPEI---------SGLEVTKWLKEDD 71 (123)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEE---SCHHHHHHHHHHHCCSEEEEESBCSSS---------BHHHHHHHHHHST
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHhCCCCEEEEEeccCCC---------cHHHHHHHHHhCC
Confidence 3444432233555778888999875532 344566666655555555442 12121 235788888875
Q ss_pred --CCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 249 --STKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 249 --~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.++|+++=.+-.+.++..++.+.|+|+++.
T Consensus 72 ~~~~iPii~lt~~~~~~~~~~~~~~G~~~~l~ 103 (123)
T d1mb3a_ 72 DLAHIPVVAVTAFAMKGDEERIREGGCEAYIS 103 (123)
T ss_dssp TTTTSCEEEEC------CHHHHHHHTCSEEEC
T ss_pred CcCCCCeEEEEEecCHHHHHHHHHcCCCEEEE
Confidence 368998888888888999999999999843
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.3 Score=37.35 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=58.1
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.-.|.+-+++-. |-.|| ++.++++|+. .++|+++++-++ -..
T Consensus 38 ~~al~~~~~~~~DlvllD~~m--P~~~G--------------------~el~~~ir~~~~~~~vivlt~~~------~~~ 89 (138)
T d1a04a2 38 EQGIELAESLDPDLILLDLNM--PGMNG--------------------LETLDKLREKSLSGRIVVFSVSN------HEE 89 (138)
T ss_dssp HHHHHHHHHHCCSEEEEETTS--TTSCH--------------------HHHHHHHHHSCCCSEEEEEECCC------CHH
T ss_pred HHHHHHHHhcCCCEEEEecCC--CCCCH--------------------HHHHHHHHhhCCCCCEEEEEEEC------CHH
Confidence 455666666779999997544 55677 5688888765 678988876432 356
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHH
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEA 188 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~ 188 (311)
.+..+.++|++|++.=....++..+....+
T Consensus 90 ~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~v 119 (138)
T d1a04a2 90 DVVTALKRGADGYLLKDMEPEDLLKALHQA 119 (138)
T ss_dssp HHHHHHHTTCSEEEETTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 777899999999999777777765544433
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=93.92 E-value=0.54 Score=34.98 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCC
Q 021527 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGI 259 (311)
Q Consensus 181 ~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGI 259 (311)
...+...+.+.|++.+..+ ++..+-++.+.+....++.+--... + .+-.++++++|+. .++||++=.|-
T Consensus 14 ~~~l~~~L~~~g~~v~~~a--~~~~~al~~~~~~~~dliilD~~mp--~------~~G~e~~~~ir~~~~~~pvi~ls~~ 83 (118)
T d1u0sy_ 14 RMMLKDIITKAGYEVAGEA--TNGREAVEKYKELKPDIVTMDITMP--E------MNGIDAIKEIMKIDPNAKIIVCSAM 83 (118)
T ss_dssp HHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHHHCCSEEEEECSCG--G------GCHHHHHHHHHHHCTTCCEEEEECT
T ss_pred HHHHHHHHHHcCCceEEEE--CCHHHHHHHHHhccCCEEEEecCCC--C------CCHHHHHHHHHHhCCCCcEEEEEcc
Confidence 4456777888898765433 3456666666665566655521111 1 1234788888775 46898888888
Q ss_pred CCHHHHHHHHHcCCcEEEE
Q 021527 260 SKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 260 st~e~v~~v~~~GADGvIV 278 (311)
++.+.+.+..+.||++.+.
T Consensus 84 ~~~~~~~~a~~~Ga~~yl~ 102 (118)
T d1u0sy_ 84 GQQAMVIEAIKAGAKDFIV 102 (118)
T ss_dssp TCHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 8999999999999999854
|
| >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Probable two-component system transcriptional regulator Rv1626 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.91 E-value=0.17 Score=40.84 Aligned_cols=89 Identities=15% Similarity=0.087 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC
Q 021527 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS 260 (311)
Q Consensus 181 ~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs 260 (311)
..-+...+.+.|++.+-.+ .+..+.++.+.......+.+--.++ | -+-.++++++|+..+.||++=.+-.
T Consensus 16 r~~l~~~L~~~g~~vv~~a--~~g~eal~~~~~~~pDlvllDi~mP--~------~dG~e~~~~ir~~~~~pIi~lTa~~ 85 (190)
T d1s8na_ 16 RMDLAEMLREEGYEIVGEA--GDGQEAVELAELHKPDLVIMDVKMP--R------RDGIDAASEIASKRIAPIVVLTAFS 85 (190)
T ss_dssp HHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHHHCCSEEEEESSCS--S------SCHHHHHHHHHHTTCSCEEEEEEGG
T ss_pred HHHHHHHHHHCCCEEEEEE--CCHHHHHHHHhcCCCCEEEEecccc--C------cchHHHHHHHHhcCCCCEEEEeCCC
Confidence 4446777788898765433 3445666666555556555421111 1 1235789999988789999999999
Q ss_pred CHHHHHHHHHcCCcEEEEh
Q 021527 261 KPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVG 279 (311)
+.+.+.+..++|||+.++-
T Consensus 86 ~~~~~~~al~~Ga~~yl~K 104 (190)
T d1s8na_ 86 QRDLVERARDAGAMAYLVK 104 (190)
T ss_dssp GHHHHHTTGGGSCEEEEEE
T ss_pred CHHHHHHHHHcCCCEeccC
Confidence 9999999999999999875
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=93.85 E-value=0.079 Score=48.04 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=32.9
Q ss_pred HHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 242 LREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 242 l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
...+|+.++.|+++++|+ +++++.+++..| ||.|-+|-+++.
T Consensus 284 ~~~i~~~~~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~ia 326 (364)
T d1icpa_ 284 LVPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFIS 326 (364)
T ss_dssp SHHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHHHHhcCCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHH
Confidence 455677788999998887 578888777654 999999977764
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.44 Score=35.53 Aligned_cols=74 Identities=26% Similarity=0.250 Sum_probs=53.1
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.+..+.+.-.|.+-+++-. |-.|| ++.++++|++ .++|+++++-++ ...
T Consensus 34 ~eal~~l~~~~~dliilD~~m--P~~~G--------------------~e~~~~i~~~~~~~pvi~lt~~~------~~~ 85 (119)
T d2pl1a1 34 KEADYYLNEHIPDIAIVDLGL--PDEDG--------------------LSLIRRWRSNDVSLPILVLTARE------SWQ 85 (119)
T ss_dssp HHHHHHHHHSCCSEEEECSCC--SSSCH--------------------HHHHHHHHHTTCCSCEEEEESCC------CHH
T ss_pred HHHHHHHHhcccceeehhccC--CCchh--------------------HHHHHHHHhcCcccceEeeeccC------CHH
Confidence 566777777889999998544 66677 4577777764 689999987543 234
Q ss_pred HHHHHHHcCCcEEEecCCChhhH
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~ 181 (311)
....+.++|+++++.=-+..++.
T Consensus 86 ~~~~a~~~Ga~~yl~KP~~~~~L 108 (119)
T d2pl1a1 86 DKVEVLSAGADDYVTKPFHIEEV 108 (119)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHH
T ss_pred HHHHHHHcCCCEEEECCCCHHHH
Confidence 56678899999998864555553
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.76 E-value=0.18 Score=43.66 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=12.4
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEeC
Q 021527 177 PLEETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 177 p~ee~~~~~~~~~~~gi~~I~lis 200 (311)
..++..++.+.+++.|.+.+..+.
T Consensus 76 st~~~i~~a~~a~~~Ga~~~~~~~ 99 (293)
T d1w3ia_ 76 NLDDAIRLAKLSKDFDIVGIASYA 99 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEEC
T ss_pred hhhhhhhhhhhhhhhccccccccc
Confidence 334555555555555555554443
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=93.56 E-value=0.33 Score=41.79 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=63.5
Q ss_pred HHHHHHHcCCcEEEe-cCCC------h----hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh--CCceEEEEecC
Q 021527 159 FMSTVRDIGIRGLVV-PDVP------L----EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA--SEGFVYLVSSI 225 (311)
Q Consensus 159 fi~~~~~aGadGvii-pDlp------~----ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~--a~gfiY~vs~~ 225 (311)
-++.+.+.|||-+=+ +++. . +|...+++.|...-+++|+ =++..+++.+.+..+. ..|..|+-+++
T Consensus 108 Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIl-Et~~L~~~e~~~a~~ia~~aGadfvKTST 186 (251)
T d1o0ya_ 108 EAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVII-ETCYLDTEEKIAACVISKLAGAHFVKTST 186 (251)
T ss_dssp HHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEEC-CGGGCCHHHHHHHHHHHHHTTCSEEECCC
T ss_pred HHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeee-cccccCcHHHHHHHHHHHHhCcceeeccC
Confidence 456788899987644 2221 1 2344445555322223222 2333333333333332 35777887766
Q ss_pred CccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 226 GVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
|.... +..+ +-++.+++.. .+.|=+.+||+|.+|+.+++++|||= +||
T Consensus 187 Gf~~~--gat~---e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~aGa~r--iGt 236 (251)
T d1o0ya_ 187 GFGTG--GATA---EDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADR--IGT 236 (251)
T ss_dssp SSSSC--CCCH---HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSE--EEE
T ss_pred CCCCC--CcCH---HHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHHhhHH--hCC
Confidence 63211 2222 2244444432 46677899999999999999999995 574
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=93.42 E-value=0.45 Score=40.84 Aligned_cols=64 Identities=17% Similarity=0.310 Sum_probs=50.3
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
+|..+ ++-.|..+.+.+++.++..++.|+|.+.+.-||-.+. +-+++++..+++.+.+++
T Consensus 71 ~~~~v--i~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~------------------s~~~i~~~~~~v~~~~~~ 130 (292)
T d1xkya1 71 KRVPV--IAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKP------------------SQEGMYQHFKAIAESTPL 130 (292)
T ss_dssp TSSCE--EEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCC------------------CHHHHHHHHHHHHHTCSS
T ss_pred CCceE--EEecCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCC------------------CHHHHHHHHHHHhccCCC
Confidence 34444 4466889999999999999999999999999985542 224556777888888899
Q ss_pred cEEE
Q 021527 141 PIAL 144 (311)
Q Consensus 141 Piil 144 (311)
|+++
T Consensus 131 pi~i 134 (292)
T d1xkya1 131 PVML 134 (292)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 9998
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=93.40 E-value=0.48 Score=36.18 Aligned_cols=96 Identities=19% Similarity=0.075 Sum_probs=62.5
Q ss_pred EecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhhcC-
Q 021527 172 VVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKESS- 249 (311)
Q Consensus 172 iipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~~- 249 (311)
++.|=...-...+...+...|..+.. + .+..+-+..+.+....++.+- ...+. +-.++++++|+..
T Consensus 4 LiVDDd~~~~~~l~~~L~~~g~~v~~-a--~~~~eAl~~l~~~~~dlvilD~~mp~~---------~G~e~~~~lr~~~~ 71 (137)
T d1ny5a1 4 LVIEDDKVFRGLLEEYLSMKGIKVES-A--ERGKEAYKLLSEKHFNVVLLDLLLPDV---------NGLEILKWIKERSP 71 (137)
T ss_dssp EEECCCHHHHHHHHHHHHHHTCEEEE-E--SSHHHHHHHHHHSCCSEEEEESBCSSS---------BHHHHHHHHHHHCT
T ss_pred EEEecCHHHHHHHHHHHHHCCCEEEE-E--CCHHHHHHHhhccccccchHHHhhhhh---------hHHHHHHHHHHhCC
Confidence 34432233355567777888987543 2 355566666655444444442 11111 2247888888764
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
++||++=.|-.+.+.+.+..++||+..++=
T Consensus 72 ~~piI~lT~~~~~~~~~~a~~~Ga~dyl~K 101 (137)
T d1ny5a1 72 ETEVIVITGHGTIKTAVEAMKMGAYDFLTK 101 (137)
T ss_dssp TSEEEEEEETTCHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 799988888888999999999999999873
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.31 E-value=1.7 Score=37.65 Aligned_cols=211 Identities=14% Similarity=0.182 Sum_probs=114.4
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC------CCcEE
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM------SCPIA 143 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~------~iPii 143 (311)
|.| |.. ...+.++.|.++|+|++=|.+-..++ -+ ..+.++.++++.+++ -.|+.
T Consensus 38 TiG-Pas-~~~e~l~~Li~aGvnv~RiN~SHg~~------e~------------h~~~i~~iR~~~~~~~~~~il~~~~~ 97 (282)
T d2g50a2 38 TIG-PAS-RSVETLKEMIKSGMNVARMNFSHGTH------EY------------HAETIKNVRTATESFASDPILYRPVA 97 (282)
T ss_dssp ECS-TTT-CSHHHHHHHHHHTCCEEEEETTSSCH------HH------------HHHHHHHHHHHHHTTTTCTTTCCCCE
T ss_pred EeC-CCC-CCHHHHHHHHHcCCCEEEEeCCCCCH------HH------------HHHHHHHHHHHHHHhCCCceeccccc
Confidence 446 433 35789999999999999998666442 11 123455666665442 23544
Q ss_pred EEe-cCcchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCeEEEeCCCC--hHHHHHHHHHhCCceE
Q 021527 144 LFT-YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIELVLFTTPTT--PTDRMKAIVEASEGFV 219 (311)
Q Consensus 144 lm~-Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~I~lisp~t--~~eri~~i~~~a~gfi 219 (311)
++. ...+....+--+.+..+.+.|+|.+-+.=.-- +...++++.++++|-+.-.+.--.+ ..+.+++|.+.++|..
T Consensus 98 I~~d~~~~~l~~~di~di~~a~~~~vD~ialSFVrs~~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi~~sDgIM 177 (282)
T d2g50a2 98 VALDTKGPAVSEKDIQDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIM 177 (282)
T ss_dssp EEEECCCCSSCHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEE
T ss_pred cccccccccccchHHHHHHHhhhccccceeecccCCHHHHHHHHHHHHHcCCCceEEEeecchhhhhcchhhccccceee
Confidence 442 22233332223456678889999988864332 4567788888887744333322222 2356788888888754
Q ss_pred EEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeC---------CCCHH---HHHHHHHcCCcEEEEhhHhhchh
Q 021527 220 YLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFG---------ISKPE---HVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 220 Y~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfG---------Ist~e---~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
---.-.|+ .+. ..++.--...++..++ .++|+++.+- .-|.. |+......|+||+..-..-..
T Consensus 178 IaRGDLg~ei~~-e~vp~~Qk~Ii~~~~~-~~kpvivAt~~leSMi~~~~pTRaEv~Dianav~~G~D~imLs~ETa~-- 253 (282)
T d2g50a2 178 VARGDLGIEIPA-EKVFLAQKMIIGRCNR-AGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAK-- 253 (282)
T ss_dssp EEHHHHHHHSCG-GGHHHHHHHHHHHHHH-HTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHT--
T ss_pred eeccccccccCH-HHhHHHHHHHHHHHHh-cCCcEEEecccccccccCCCCCHHHHHHHHHHHHhCCCEEEECccccc--
Confidence 32111111 010 1111112233333333 4789987543 32443 455566789999988633322
Q ss_pred hhcCCchhHHHHHHHHHHHH
Q 021527 287 GEAQSPEEGLKELEKFAKSL 306 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l 306 (311)
+.-|.+.++.+...+++.
T Consensus 254 --G~~p~~~V~~l~~i~~~~ 271 (282)
T d2g50a2 254 --GDYPLEAVRMQHLIAREA 271 (282)
T ss_dssp --CSCHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHH
Confidence 112344455555555443
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.22 E-value=0.2 Score=44.53 Aligned_cols=100 Identities=16% Similarity=0.312 Sum_probs=62.5
Q ss_pred HHHHHHHHHHc-CCccEEEE-E-----eCCCCChhhHHHHHHHHHHCCCCEEEEcCCC--------CCCCCChHHHHHHH
Q 021527 50 LAETFTRLKKQ-GKVALIPY-I-----TAGDPDLSTTAEALKLLDSCGSDIIELGVPY--------SDPLADGPVIQAAA 114 (311)
Q Consensus 50 i~~~f~~~~~~-~~~~li~y-i-----~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf--------sDP~aDGp~Iq~a~ 114 (311)
+.+.++..++. +....+.+ + ..|..+.+++.++++.|++.|+|.+++..=+ ..|...|
T Consensus 194 ~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~------- 266 (330)
T d1ps9a1 194 AVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRG------- 266 (330)
T ss_dssp HHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTT-------
T ss_pred HHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcch-------
Confidence 44455555543 33333333 3 2344567899999999999999999984321 2222222
Q ss_pred HHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcC-CcEEEe
Q 021527 115 TRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIG-IRGLVV 173 (311)
Q Consensus 115 ~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG-adGvii 173 (311)
.. ....+++|+.+++||+.-+-.+. -+.++.+.+.| +|.|-+
T Consensus 267 -------~~----~~~~~~ik~~~~~pvi~~G~i~~------~~~ae~~l~~g~~D~V~~ 309 (330)
T d1ps9a1 267 -------AF----SWVTRKLKGHVSLPLVTTNRIND------PQVADDILSRGDADMVSM 309 (330)
T ss_dssp -------TT----HHHHHHHTTSCSSCEEECSSCCS------HHHHHHHHHTTSCSEEEE
T ss_pred -------hH----HHHHHHHHhhCCceEEEeCCCCC------HHHHHHHHHCCCcchhHh
Confidence 11 23677889999999998764331 23556666666 888777
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=0.57 Score=35.00 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=53.0
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.-.|.|-+++- -|-.|| +++++++|+..++|+++++-++ -...
T Consensus 36 ~~al~~l~~~~~dlii~D~~--mp~~~G--------------------~~~~~~~r~~~~~pii~lt~~~------~~~~ 87 (121)
T d1xhfa1 36 AEMHQILSEYDINLVIMDIN--LPGKNG--------------------LLLARELREQANVALMFLTGRD------NEVD 87 (121)
T ss_dssp HHHHHHHHHSCCSEEEECSS--CSSSCH--------------------HHHHHHHHHHCCCEEEEEESCC------SHHH
T ss_pred HHHHHHHHhcCCCEEEeecc--cCCccC--------------------cHHHHHHHhcCCCcEEEEECCC------CHHH
Confidence 56667777788999999854 455677 3466677777789999987443 2344
Q ss_pred HHHHHHcCCcEEEecCCChhhH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~ 181 (311)
...+.++|+++++.=-+..++.
T Consensus 88 ~~~a~~~Ga~dyl~KP~~~~~L 109 (121)
T d1xhfa1 88 KILGLEIGADDYITKPFNPREL 109 (121)
T ss_dssp HHHHHHHTCSEEEESSCCHHHH
T ss_pred HHHHHHcCCCEEEeCCCCHHHH
Confidence 5678899999998865555553
|
| >d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermotoga maritima [TaxId: 2336]
Probab=93.12 E-value=0.31 Score=41.97 Aligned_cols=123 Identities=19% Similarity=0.181 Sum_probs=69.7
Q ss_pred HHHHHHHcCCcEEEecCC-----Chh---hHHHHHHHHHHcCCCeEEEeCCCChHHH--------HHHHHHh--------
Q 021527 159 FMSTVRDIGIRGLVVPDV-----PLE---ETESLQKEAMKNKIELVLFTTPTTPTDR--------MKAIVEA-------- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl-----p~e---e~~~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~~~-------- 214 (311)
-.+.+++.|++-+|+..- --| ...+=...+.++|+.+|+-+.-+. ++| +......
T Consensus 79 Sa~mL~d~G~~~viiGHSERR~~~~Etd~~i~~K~~~al~~gl~pIlCIGE~~-~~r~~g~t~~~l~~Ql~~~l~~~~~~ 157 (252)
T d1b9ba_ 79 SPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETL-EEREKGLTFCVVEKQVREGFYGLDKE 157 (252)
T ss_dssp CHHHHHTTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCH-HHHHHTCHHHHHHHHHHHHHTTCCHH
T ss_pred cHHHHHHhhcchheecchhhhhhhcccCHHHHHHHHHHHHCCCeEEEEecccc-hhhhccchHHHHHHHHHhhhcccchh
Confidence 455677788888888521 001 122234556778998888776543 232 1111110
Q ss_pred --CCceEEEEecCC-ccCCCCCCCchHHHHHHHHhhc----C------CCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhh
Q 021527 215 --SEGFVYLVSSIG-VTGARASISGHVQTLLREIKES----S------TKPVAVGFGISKPEHVQQVAG-WGADGVIVGS 280 (311)
Q Consensus 215 --a~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~----~------~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGS 280 (311)
..-.+-|.+.-. .||... .+.+..+....+|+. . ++||+.|+.|+ ++++..++. -+.||+-||+
T Consensus 158 ~~~~iiIAYEPvWAIGtG~~a-~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~-~~N~~~i~~~~~vDG~LVGg 235 (252)
T d1b9ba_ 158 EAKRVVIAYEPVWAIGTGRVA-TPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIK-PDNFLGLIVQKDIDGGLVGG 235 (252)
T ss_dssp HHTTCEEEECCGGGSSSSCCC-CHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEESSCC-HHHHTTTSSSTTCCEEEESG
T ss_pred cccceEEEeccccccccccCC-ChHHHHHHHHHHHHHHHHhccccccCcccEEEcCCCC-HHHHHHHhcCCCCCEEEeec
Confidence 122344433221 255432 233444444444432 1 47999999997 899999874 2489999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
|=.+
T Consensus 236 ASL~ 239 (252)
T d1b9ba_ 236 ASLK 239 (252)
T ss_dssp GGTS
T ss_pred hhCC
Confidence 8765
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.08 E-value=0.19 Score=43.57 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=59.1
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
.+|..+ ..-.|.++.+.+++.++..++.|+|.+.+..||..+. +-+++.+..++|.+.++
T Consensus 74 ~~~~~v--i~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~------------------~~~~l~~~~~~v~~~~~ 133 (296)
T d1xxxa1 74 GDRARV--IAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKP------------------PQRGLQAHFTAVADATE 133 (296)
T ss_dssp TTTSEE--EEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC------------------CHHHHHHHHHHHHTTCS
T ss_pred ccccce--EeccccchhHHHHHHHHHHHHhcCCeEEEEeccCCCC------------------CHHHHHHHHHHHHHhcC
Confidence 345444 4566889999999999999999999999999986542 22456678888888889
Q ss_pred CcEEEEecCcchhc-cC-HHHHHHHHHH
Q 021527 140 CPIALFTYYNPILK-RG-VDNFMSTVRD 165 (311)
Q Consensus 140 iPiilm~Y~n~i~~-~g-~~~fi~~~~~ 165 (311)
+|+++ |-+|-.. .. ..++++++.+
T Consensus 134 ~pi~l--Yn~p~~~g~~~~~~~~~~L~~ 159 (296)
T d1xxxa1 134 LPMLL--YDIPGRSAVPIEPDTIRALAS 159 (296)
T ss_dssp SCEEE--EECHHHHSSCCCHHHHHHHHT
T ss_pred CCEEE--EECccccCCCCCHHHHHHhcC
Confidence 99877 5444321 11 1345666654
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.05 E-value=0.56 Score=34.76 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=52.2
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.+..+.+.-.|.+-+++- -|-.|| ++.++++++..++|+++++-.+ ....
T Consensus 34 ~eal~~~~~~~~dlillD~~--mp~~~G--------------------~~~~~~i~~~~~~pvI~lt~~~------~~~~ 85 (117)
T d2a9pa1 34 REALEQFEAEQPDIIILDLM--LPEIDG--------------------LEVAKTIRKTSSVPILMLSAKD------SEFD 85 (117)
T ss_dssp HHHHHHHHHHCCSEEEECSS--CSSSCH--------------------HHHHHHHHTTCCCCEEEEESCC------SHHH
T ss_pred HHHHHHHHhcCCCEEEeccc--cCCCCc--------------------cHHHHHHHhCCCCCEEEEecCC------CHHH
Confidence 56667777788999999854 455677 4577777777789999987543 2344
Q ss_pred HHHHHHcCCcEEEecCCChhh
Q 021527 160 MSTVRDIGIRGLVVPDVPLEE 180 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee 180 (311)
...+.++|+++++.=-+..++
T Consensus 86 ~~~a~~~Ga~d~l~KP~~~~~ 106 (117)
T d2a9pa1 86 KVIGLELGADDYVTKPFSNRE 106 (117)
T ss_dssp HHHHHHHTCSEEEESSCCHHH
T ss_pred HHHHHHcCCCEEEECCCCHHH
Confidence 557889999999886444444
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=93.05 E-value=0.33 Score=36.22 Aligned_cols=73 Identities=15% Similarity=0.305 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cCCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.-.|.+-+++-. |-.|| ++.++++|+ ..++|+++++-++ -..
T Consensus 36 ~~al~~~~~~~~dliilD~~m--p~~~G--------------------~e~~~~ir~~~~~~pvi~ls~~~------~~~ 87 (118)
T d1u0sy_ 36 REAVEKYKELKPDIVTMDITM--PEMNG--------------------IDAIKEIMKIDPNAKIIVCSAMG------QQA 87 (118)
T ss_dssp HHHHHHHHHHCCSEEEEECSC--GGGCH--------------------HHHHHHHHHHCTTCCEEEEECTT------CHH
T ss_pred HHHHHHHHhccCCEEEEecCC--CCCCH--------------------HHHHHHHHHhCCCCcEEEEEccC------CHH
Confidence 566666677789999998554 54577 456666654 3679999987543 356
Q ss_pred HHHHHHHcCCcEEEecCCChhh
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEE 180 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee 180 (311)
+...+.+.|+++++.=-+..++
T Consensus 88 ~~~~a~~~Ga~~yl~KP~~~~~ 109 (118)
T d1u0sy_ 88 MVIEAIKAGAKDFIVKPFQPSR 109 (118)
T ss_dssp HHHHHHHTTCCEEEESSCCHHH
T ss_pred HHHHHHHcCCCEEEECCCCHHH
Confidence 7778899999999885444444
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=1.2 Score=32.81 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCC
Q 021527 180 ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGI 259 (311)
Q Consensus 180 e~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGI 259 (311)
-...+...+++.|.... .+ .+..+-++.+.+.....+.+--. ..| .+..+.++.+|+..+.|+++=.|-
T Consensus 13 ~~~~l~~~L~~~g~~v~-~a--~~~~~a~~~~~~~~~dliilD~~--mp~------~~g~~~~~~~~~~~~~piI~lt~~ 81 (120)
T d1zgza1 13 TQARLQSYFTQEGYTVS-VT--ASGAGLREIMQNQSVDLILLDIN--LPD------ENGLMLTRALRERSTVGIILVTGR 81 (120)
T ss_dssp HHHHHHHHHHHTTCEEE-EE--SSHHHHHHHHHHSCCSEEEEESC--CSS------SCHHHHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHHHHHHCCCEEE-EE--CCHHHHHHHHHhcCCCEEeeehh--hcc------chhHHHHHHHhccCCCeEEEEEcc
Confidence 35557778888897643 22 24445555554433344433211 111 123467888888888999888889
Q ss_pred CCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHH
Q 021527 260 SKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 260 st~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
++.++..+.+++|||+.+. |.+. ..+.+..+++.++.
T Consensus 82 ~~~~~~~~a~~~Ga~dyl~-----KP~~----~~~L~~~i~~~lrR 118 (120)
T d1zgza1 82 SDRIDRIVGLEMGADDYVT-----KPLE----LRELVVRVKNLLWR 118 (120)
T ss_dssp CCHHHHHHHHHHTCSEEEE-----SSCC----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCEEEE-----CCCC----HHHHHHHHHHHHcc
Confidence 9999999999999999976 5442 24455566655544
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.98 E-value=0.64 Score=35.13 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=50.5
Q ss_pred hhHHHHHHHHH--HCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc--cCCCcEEEEecCcchh
Q 021527 77 STTAEALKLLD--SCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP--QMSCPIALFTYYNPIL 152 (311)
Q Consensus 77 ~~~~e~~~~L~--~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~--~~~iPiilm~Y~n~i~ 152 (311)
+..++.++... ....|.|-++.-. |-.|| ++.++++|+ ..++|+++++-++
T Consensus 36 ~eAl~~l~~~~~~~~~~dlillD~~m--P~~dG--------------------~el~~~ir~~~~~~~piI~lT~~~--- 90 (128)
T d2r25b1 36 QEAFDKVKELTSKGENYNMIFMDVQM--PKVDG--------------------LLSTKMIRRDLGYTSPIVALTAFA--- 90 (128)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECSCC--SSSCH--------------------HHHHHHHHHHSCCCSCEEEEESCC---
T ss_pred HHHHHHHHhhhhccCCCCEEEEEeCC--CCCCH--------------------HHHHHHHHHccCCCCeEEEEECCC---
Confidence 44555554432 2468999987443 66788 456666653 3578998887543
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhH
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~ 181 (311)
-......+.++|+++++.=-+..++.
T Consensus 91 ---~~~~~~~~~~~G~~~~l~KP~~~~~L 116 (128)
T d2r25b1 91 ---DDSNIKECLESGMNGFLSKPIKRPKL 116 (128)
T ss_dssp ---SHHHHHHHHHTTCSEEEESSCCHHHH
T ss_pred ---CHHHHHHHHHcCCCEEEECCCCHHHH
Confidence 34567789999999998864444443
|
| >d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=1.7 Score=38.45 Aligned_cols=159 Identities=16% Similarity=0.212 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCC---CCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcch-
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDP---LADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPI- 151 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP---~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i- 151 (311)
+...+.++.+.+.|+..+-| ||..+. ..+| ..|+.. -++ +-+.++.+|+.. ++=|+.-.-..++
T Consensus 49 d~L~~~ie~~~~lGI~ai~L-Fpv~~~~~Kd~~g-------seA~n~-~~l--v~rair~iK~~fpdl~vi~DVcLc~YT 117 (320)
T d1pv8a_ 49 KRLEEMLRPLVEEGLRCVLI-FGVPSRVPKDERG-------SAADSE-ESP--AIEAIHLLRKTFPNLLVACDVCLCPYT 117 (320)
T ss_dssp HHHHHHHHHHHHHTCCEEEE-EECC---------------------C-CSH--HHHHHHHHHHHSTTSEEEEEECCC---
T ss_pred HHHHHHHHHHHHCCCCEEEE-ecccCccccCCCC-------hhhhhh-hhh--HHHHHHHHHHHhhcceEeecccccccc
Confidence 46888888889999998877 333221 1111 111110 111 224566666553 3323322222221
Q ss_pred -------h-ccC-HH------HHHH---HHHHcCCcEEEecCCChhhHHHHHHHHHHcCC-CeEEEeC------------
Q 021527 152 -------L-KRG-VD------NFMS---TVRDIGIRGLVVPDVPLEETESLQKEAMKNKI-ELVLFTT------------ 200 (311)
Q Consensus 152 -------~-~~g-~~------~fi~---~~~~aGadGviipDlp~ee~~~~~~~~~~~gi-~~I~lis------------ 200 (311)
+ ..| ++ ...+ ..+++|+|.|--.|+=.......++.+.++|. +.+..++
T Consensus 118 ~hGHcGil~~~~~IdND~Tl~~L~k~Al~~A~AGaDiVAPSdMMDGrV~aIR~~Ld~~g~~~~v~ImSYsaKyaS~fYGP 197 (320)
T d1pv8a_ 118 SHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGP 197 (320)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHTCSEEEECC--CCHHHHHHHHHHHTTCTTTCEEBCCCEECCCGGGHH
T ss_pred cccccceeecccccCcHHHHHHHHHHHHHHHhcccceeeecccchHHHHHHHHHHHhcCCcccceeechhhhcCchhhhh
Confidence 1 111 21 1222 24779999987778877788889999999998 4343222
Q ss_pred --------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEE
Q 021527 201 --------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAV 255 (311)
Q Consensus 201 --------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~v 255 (311)
|....|-+.+... ...|..+++=.-| + ...+.|+++|+. +++|+++
T Consensus 198 FRdA~~s~p~~gdr~tYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa-------~--~yLDiI~~~k~~~~~~Pv~a 265 (320)
T d1pv8a_ 198 FRDAAKSSPAFGDRRCYQLPPGARGLALRAVDRDVREGADMLMVKPG-------M--PYLDIVREVKDKHPDLPLAV 265 (320)
T ss_dssp HHHCC-------------CCTTCHHHHHHHHHHHHHTTCSBEEEESC-------G--GGHHHHHHHHHHSTTSCEEE
T ss_pred hHHHHhcCccCCCcceeeeCcchhHHHHHHHHHHHhcCCceEeeehh-------H--HHHHHHHHHHhhCCCCCEEE
Confidence 3333344433322 3567766642111 1 246889999987 5899954
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=92.84 E-value=0.47 Score=36.62 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=52.5
Q ss_pred HHHHHHHHHC-------CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc---CCCcEEEEecCc
Q 021527 80 AEALKLLDSC-------GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ---MSCPIALFTYYN 149 (311)
Q Consensus 80 ~e~~~~L~~~-------GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~---~~iPiilm~Y~n 149 (311)
.+.+..|.+. -.|.|-+++ .-|-.|| ++.++++|+. .++||++++.++
T Consensus 39 ~~Al~~l~~~~~~~~~~~pdlIllD~--~mP~~~G--------------------~el~~~ir~~~~~~~iPvi~lT~~~ 96 (144)
T d1i3ca_ 39 LAAMAFLQQQGEYENSPRPNLILLDL--NLPKKDG--------------------REVLAEIKQNPDLKRIPVVVLTTSH 96 (144)
T ss_dssp HHHHHHHTTCGGGTTCCCCSEEEECS--CCSSSCH--------------------HHHHHHHHHCTTTTTSCEEEEESCC
T ss_pred HHHHHHHHhchhhhccCCCCEEEEEC--ccccccc--------------------hHHHHHHHhCcccCCCeEEEEECCC
Confidence 4555555443 368888874 3455677 5577777653 468999987543
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHH
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEA 188 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~ 188 (311)
-......+.++|+++++.=-+..++.....+.+
T Consensus 97 ------~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~l 129 (144)
T d1i3ca_ 97 ------NEDDVIASYELHVNCYLTKSRNLKDLFKMVQGI 129 (144)
T ss_dssp ------CHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 245677899999999988655556654433333
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.78 E-value=1.4 Score=33.17 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe-cCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeC
Q 021527 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS-SIGVTGARASISGHVQTLLREIKES-STKPVAVGFG 258 (311)
Q Consensus 181 ~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs-~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfG 258 (311)
...+...+...|+.... + .+..+-+..+......++.+-- .-+..| .++++++|+. .++||++=.|
T Consensus 21 ~~~l~~~L~~~g~~v~~-a--~~g~ea~~~~~~~~~dlillD~~mP~~dG---------~el~~~ir~~~~~~pii~lt~ 88 (133)
T d2ayxa1 21 RRLLADQLGSLGYQCKT-A--NDGVDALNVLSKNHIDIVLSDVNMPNMDG---------YRLTQRIRQLGLTLPVIGVTA 88 (133)
T ss_dssp HHHHHHHHHHHTSEEEE-E--CCSHHHHHHHHHSCCSEEEEEESSCSSCC---------HHHHHHHHHHHCCSCEEEEES
T ss_pred HHHHHHHHHHcCCEEEE-E--CcHHHHHHHHhccCceEEEEeccCCCCCH---------HHHHHHHHHhCCCCCEEEEec
Confidence 45567778888987432 2 2345555555554445554422 222222 3678888775 3678877777
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHH
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLK 307 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~ 307 (311)
-...++..+..+.||++++. |.+. .++..+.+..+++.++
T Consensus 89 ~~~~~~~~~~~~~G~~~~l~-----KP~~----~~~L~~~l~~~~~r~r 128 (133)
T d2ayxa1 89 NALAEEKQRCLESGMDSCLS-----KPVT----LDVIKQTLTLYAERVR 128 (133)
T ss_dssp STTSHHHHHHHHCCCEEEEE-----SSCC----HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCEEEE-----CCCC----HHHHHHHHHHHHHHHH
Confidence 77789999999999999854 5553 2344556666666554
|
| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Putative cytoplasmic protein STM4435 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.63 E-value=0.71 Score=38.67 Aligned_cols=109 Identities=18% Similarity=0.282 Sum_probs=62.0
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCC-CCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVP-YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~P-fsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+.+.|++ .+-+.++...+.|.|.|||-.- ...++.|+ .+.+ .++++.++.++++..++.+
T Consensus 12 ~~~~p~l-~lee~l~~a~~~G~dgiEl~~~~~~~~~~~~--------------~~~~----~~k~~l~~~gl~i~~l~~~ 72 (271)
T d2q02a1 12 RKIAPGL-SIEAFFRLVKRLEFNKVELRNDMPSGSVTDD--------------LNYN----QVRNLAEKYGLEIVTINAV 72 (271)
T ss_dssp GGGCTTS-CHHHHHHHHHHTTCCEEEEETTSTTSSTTTT--------------CCHH----HHHHHHHHTTCEEEEEEEE
T ss_pred hhhcCCC-CHHHHHHHHHHhCCCEEEEecCccccccccc--------------CCHH----HHHHHHHHcCCcEEEeecc
Confidence 5556654 3556777788899999999421 12233333 2222 3344444566666555422
Q ss_pred cchh------ccCHHHHHHHHHHcCCcEEEecC------CChhh----HHHHHHHHHHcCCCeEE
Q 021527 149 NPIL------KRGVDNFMSTVRDIGIRGLVVPD------VPLEE----TESLQKEAMKNKIELVL 197 (311)
Q Consensus 149 n~i~------~~g~~~fi~~~~~aGadGviipD------lp~ee----~~~~~~~~~~~gi~~I~ 197 (311)
.++. .--..++++.+++.|+.-|.++- .+.++ ..++.+.++++|+...+
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 137 (271)
T d2q02a1 73 YPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLV 137 (271)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCCcEEEEecCCCCccchHHHHHHHHHHHHHHhccCCeEEEE
Confidence 2221 11125677788899999988741 22222 44566778888886553
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=92.61 E-value=0.29 Score=42.53 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhccCCCcEEEEecCcchhccCH--HHHHHHHHHcCCcEEEec
Q 021527 125 NAILSMLKEVVPQMSCPIALFTYYNPILKRGV--DNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~--~~fi~~~~~aGadGviip 174 (311)
.++-+.++++|+.+++|+++- .|+ .+-++...+.|+||+++.
T Consensus 191 ~~~~~~i~~ik~~t~~Pv~vG--------FGI~~~e~v~~~~~~~ADGvIVG 234 (267)
T d1qopa_ 191 LPLHHLIEKLKEYHAAPALQG--------FGISSPEQVSAAVRAGAAGAISG 234 (267)
T ss_dssp -CCHHHHHHHHHTTCCCEEEE--------SSCCSHHHHHHHHHTTCSEEEEC
T ss_pred hhHHHHHHHHhhhccCCceee--------cccCCHHHHHHHHhcCCCEEEEC
Confidence 445678888888899998763 133 235566677899999997
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=0.35 Score=36.06 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=55.7
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.-.|.|-+++-. |-.|| +++++++|+....|+++++-.+ -...
T Consensus 34 ~eal~~l~~~~~dliilD~~m--P~~~G--------------------~e~~~~ir~~~~~piI~lt~~~------~~~~ 85 (119)
T d1zh2a1 34 QRGLLEAATRKPDLIILDLGL--PDGDG--------------------IEFIRDLRQWSAVPVIVLSARS------EESD 85 (119)
T ss_dssp HHHHHHHHHHCCSEEEEESEE--TTEEH--------------------HHHHHHHHTTCCCCEEEEESCC------SHHH
T ss_pred HHHHHHHHhcCCCEEEecccc--CCCCC--------------------chHHHHHHhccCCcEEEEeccC------CHHH
Confidence 455666667779999887544 44566 4577788877789999887443 2344
Q ss_pred HHHHHHcCCcEEEecCCChhhHH-HHHHHHHH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETE-SLQKEAMK 190 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~-~~~~~~~~ 190 (311)
...+.+.|+++.+.=-+..++.. .+...+++
T Consensus 86 ~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrr 117 (119)
T d1zh2a1 86 KIAALDAGADDYLSKPFGIGELQARLRVALRR 117 (119)
T ss_dssp HHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 56788899999988645555543 34444444
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.92 Score=33.50 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=52.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.-.|.+-+++-. |-.|| ++.++.+|....+|+++++-++ -...
T Consensus 35 ~~a~~~~~~~~~dliilD~~m--p~~~g--------------------~~~~~~~~~~~~~piI~lt~~~------~~~~ 86 (120)
T d1zgza1 35 AGLREIMQNQSVDLILLDINL--PDENG--------------------LMLTRALRERSTVGIILVTGRS------DRID 86 (120)
T ss_dssp HHHHHHHHHSCCSEEEEESCC--SSSCH--------------------HHHHHHHHTTCCCEEEEEESSC------CHHH
T ss_pred HHHHHHHHhcCCCEEeeehhh--ccchh--------------------HHHHHHHhccCCCeEEEEEccC------CHHH
Confidence 566677778889999997655 33555 3466677777889999987544 2344
Q ss_pred HHHHHHcCCcEEEecCCChhhH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~ 181 (311)
...+.++|+++.+.=-+..++.
T Consensus 87 ~~~a~~~Ga~dyl~KP~~~~~L 108 (120)
T d1zgza1 87 RIVGLEMGADDYVTKPLELREL 108 (120)
T ss_dssp HHHHHHHTCSEEEESSCCHHHH
T ss_pred HHHHHHCCCCEEEECCCCHHHH
Confidence 5568899999998864555553
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=92.30 E-value=0.45 Score=40.92 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=62.4
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
+|..+ ++..|..+.+.+++.++..++.|+|.+.+..||--+ .+-+++++..+++.+.+++
T Consensus 69 ~~~~v--i~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~~~------------------~~~~~i~~~f~~v~~~~~~ 128 (292)
T d2a6na1 69 GRIPV--IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNR------------------PSQEGLYQHFKAIAEHTDL 128 (292)
T ss_dssp TSSCE--EEECCCSSHHHHHHHHHTTTTSSCCEEEEECCCSSC------------------CCHHHHHHHHHHHHHTCSS
T ss_pred cccee--EeecccchHHHHHHHhccHHhcCCcceeccCCCCCC------------------CCHHHHHHHHHHHhhccCC
Confidence 44444 445788889999999999999999999999888543 2334667788888888999
Q ss_pred cEEEEecCcchh---ccCHHHHHHHHHHc-CCcEEEec
Q 021527 141 PIALFTYYNPIL---KRGVDNFMSTVRDI-GIRGLVVP 174 (311)
Q Consensus 141 Piilm~Y~n~i~---~~g~~~fi~~~~~a-GadGviip 174 (311)
|+++ |-+|-. .... ++++++.+. .+-|+--.
T Consensus 129 pi~i--Yn~P~~~g~~~~~-e~~~~L~~~pnv~giK~~ 163 (292)
T d2a6na1 129 PQIL--YNVPSATGCDLLP-ETVGRLAKVKNIIGIKEA 163 (292)
T ss_dssp CEEE--EECHHHHSCCCCH-HHHHHHHTSTTEEEEEEC
T ss_pred cEEE--EEeccccCCccCH-HHHHHHhcCCCEEEEEec
Confidence 9887 545542 2233 355555553 34454443
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=92.29 E-value=0.48 Score=36.19 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.+..+.+...|.+-+++ .-|-.|| +++++++|+. .++|+++++-++ -.+
T Consensus 34 ~eAl~~l~~~~~dlvilD~--~mp~~~G--------------------~e~~~~lr~~~~~~piI~lT~~~------~~~ 85 (137)
T d1ny5a1 34 KEAYKLLSEKHFNVVLLDL--LLPDVNG--------------------LEILKWIKERSPETEVIVITGHG------TIK 85 (137)
T ss_dssp HHHHHHHHHSCCSEEEEES--BCSSSBH--------------------HHHHHHHHHHCTTSEEEEEEETT------CHH
T ss_pred HHHHHHhhccccccchHHH--hhhhhhH--------------------HHHHHHHHHhCCCCCEEEEECCC------CHH
Confidence 5677777788999999985 4466677 4566666654 679999987432 245
Q ss_pred HHHHHHHcCCcEEEecCCChhhHH
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETE 182 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~ 182 (311)
....+.+.|++.++.=-+..++..
T Consensus 86 ~~~~a~~~Ga~dyl~KP~~~~~L~ 109 (137)
T d1ny5a1 86 TAVEAMKMGAYDFLTKPCMLEEIE 109 (137)
T ss_dssp HHHHHHTTTCCEEEEESCCHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCCHHHHH
Confidence 666788999999988545555543
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=92.26 E-value=0.66 Score=34.70 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=52.9
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.+..+.+.-.|.+-+++-- |-.|| ++.++++|+. .++|+++++-++ -.+
T Consensus 37 ~~al~~~~~~~~dlvi~D~~m--p~~~G--------------------~e~~~~lr~~~~~~~iI~lt~~~------~~~ 88 (123)
T d1dbwa_ 37 EAFLAFAPDVRNGVLVTDLRM--PDMSG--------------------VELLRNLGDLKINIPSIVITGHG------DVP 88 (123)
T ss_dssp HHHHHHGGGCCSEEEEEECCS--TTSCH--------------------HHHHHHHHHTTCCCCEEEEECTT------CHH
T ss_pred HHHHHHHhhcCCcEEEEeccC--ccccc--------------------hHHHHHHHhcCCCCeEEEEEeeC------CHH
Confidence 566777778889998887533 55677 4567777753 679999987433 245
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHH
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETES 183 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~ 183 (311)
....+.+.|+++.+.=-+..++...
T Consensus 89 ~~~~a~~~Ga~~yl~KP~~~~~L~~ 113 (123)
T d1dbwa_ 89 MAVEAMKAGAVDFIEKPFEDTVIIE 113 (123)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHH
Confidence 6778889999998885444455443
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=92.24 E-value=1.6 Score=37.38 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.+..+|+.+++||+.-=-|-++-|+.+...+|||+|.+-.++..
T Consensus 96 ~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall~ 140 (254)
T d1vc4a_ 96 LDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG 140 (254)
T ss_dssp HHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG
T ss_pred HHHHHHHHHcCCCcccCCccccHHHHHHHHhccchHHHHHHHHHH
Confidence 568999999999999877777899999999999999999887754
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=0.75 Score=34.18 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc---CCCcEEEe
Q 021527 180 ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES---STKPVAVG 256 (311)
Q Consensus 180 e~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~---~~~Pv~vG 256 (311)
-...+...+.+.|.+... + .+..+-+..+.+.....+ ++... .. + .+-.++++++|+. .++|+++=
T Consensus 12 ~~~~l~~~L~~~g~~v~~-a--~~~~~al~~l~~~~~dli-l~D~~-mp----~--~~G~~l~~~lr~~~~~~~~pvi~l 80 (121)
T d1zesa1 12 IREMVCFVLEQNGFQPVE-A--EDYDSAVNQLNEPWPDLI-LLDWM-LP----G--GSGIQFIKHLKRESMTRDIPVVML 80 (121)
T ss_dssp HHHHHHHHHHHTTCEEEE-E--CSHHHHHHHSSSSCCSEE-EECSS-CT----T--SCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEE-E--CChHHHHHHHHccCCCEE-EeecC-CC----C--CCHHHHHHHHHhCccCCCCeEEEE
Confidence 345577888889986443 2 244555554433333333 33211 11 1 1235788888874 26899988
Q ss_pred eCCCCHHHHHHHHHcCCcEEEE
Q 021527 257 FGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 257 fGIst~e~v~~v~~~GADGvIV 278 (311)
.|-.+.++..+..+.|||+.+.
T Consensus 81 t~~~~~~~~~~~~~~G~~d~l~ 102 (121)
T d1zesa1 81 TARGEEEDRVRGLETGADDYIT 102 (121)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEE
T ss_pred ECCCCHHHHHHHHHCCCCEEEE
Confidence 8888999999999999999865
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.93 E-value=0.69 Score=34.46 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeC
Q 021527 180 ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFG 258 (311)
Q Consensus 180 e~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfG 258 (311)
-...+...+++.|.+... + .+..+-++.+.+.....+.+ ... ..| .+-.++++++|+.. +.|+++=.|
T Consensus 13 ~~~~l~~~L~~~g~~v~~-a--~~~~~al~~l~~~~~dlill-D~~-mp~------~~g~~~~~~lr~~~~~~piI~lt~ 81 (122)
T d1kgsa2 13 LADLITEALKKEMFTVDV-C--YDGEEGMYMALNEPFDVVIL-DIM-LPV------HDGWEILKSMRESGVNTPVLMLTA 81 (122)
T ss_dssp HHHHHHHHHHHTTCEEEE-E--SSHHHHHHHHHHSCCSEEEE-ESC-CSS------SCHHHHHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHHHHHHCCCEEEE-E--cchHHHHHHHHhhCcccccc-ccc-ccc------chhHHHHHHHHhcCCCCcEEEEcC
Confidence 345577788888987543 2 34456565555544444433 211 111 12347888888764 789999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
-.+.++..+..+.|||+.++ |.+. +++.+..+++.+
T Consensus 82 ~~~~~~~~~~~~~Ga~~yl~-----KP~~----~~~L~~~i~~~l 117 (122)
T d1kgsa2 82 LSDVEYRVKGLNMGADDYLP-----KPFD----LRELIARVRALI 117 (122)
T ss_dssp SCHHHHHHHTCCCCCSEEEE-----SSCC----HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCceeec-----CCCC----HHHHHHHHHHHH
Confidence 99999999999999999866 5442 334445555444
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=91.84 E-value=0.27 Score=39.97 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=49.3
Q ss_pred HHHHHHHHHCCCCEEEEcCC-CCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVP-YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~P-fsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.|+|.|-.+.- +.....++ ......++.++++++..++||+.-+=. ...+
T Consensus 129 ~~~a~~~~~~g~d~i~~~~~~~~~~~~~~--------------~~~~~~~~~i~~~~~~~~iPVia~GGI------~t~~ 188 (222)
T d1y0ea_ 129 VEEAKNAARLGFDYIGTTLHGYTSYTQGQ--------------LLYQNDFQFLKDVLQSVDAKVIAEGNV------ITPD 188 (222)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSSTTSTTC--------------CTTHHHHHHHHHHHHHCCSEEEEESSC------CSHH
T ss_pred HHHHHHHHHcCCCeEEEeccCCcccccCc--------------cchhhHHHHHHHHHhcCCCcEEEeCCC------CCHH
Confidence 45566778999999987522 11111111 111223578888888899999986421 1246
Q ss_pred HHHHHHHcCCcEEEecC
Q 021527 159 FMSTVRDIGIRGLVVPD 175 (311)
Q Consensus 159 fi~~~~~aGadGviipD 175 (311)
.++++.++|+||+++.-
T Consensus 189 d~~~~~~~GAdgV~iGs 205 (222)
T d1y0ea_ 189 MYKRVMDLGVHCSVVGG 205 (222)
T ss_dssp HHHHHHHTTCSEEEECH
T ss_pred HHHHHHHcCCCEEEEch
Confidence 78888899999999973
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=91.83 E-value=0.56 Score=35.11 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeC
Q 021527 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIKES-STKPVAVGFG 258 (311)
Q Consensus 181 ~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfG 258 (311)
...+...+++.|.+..... +..+-++.+.+.....+.+- ..-+.. -.++++++|+. .++||++=.|
T Consensus 16 ~~~l~~~L~~~g~~v~~a~---~~~~a~~~l~~~~~dlii~D~~mp~~~---------G~el~~~l~~~~~~~piI~~t~ 83 (123)
T d1krwa_ 16 RWVLERALAGAGLTCTTFE---NGNEVLAALASKTPDVLLSDIRMPGMD---------GLALLKQIKQRHPMLPVIIMTA 83 (123)
T ss_dssp HHHHHHHHHHTTCEEEEES---SSHHHHHHHTTCCCSEEEECCSSSSST---------THHHHHHHHHHSSSCCEEESCC
T ss_pred HHHHHHHHHHCCCEEEEeC---CHHHHHHHHHhCCCCEEEehhhcCCch---------HHHHHHHHHHhCCCCeEEEEec
Confidence 4557778888898755432 33455555544344444331 111111 24678888775 4789999999
Q ss_pred CCCHHHHHHHHHcCCcEEE
Q 021527 259 ISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvI 277 (311)
-.+.++..+..+.||++.+
T Consensus 84 ~~~~~~~~~a~~~Ga~dyl 102 (123)
T d1krwa_ 84 HSDLDAAVSAYQQGAFDYL 102 (123)
T ss_dssp CSCHHHHHHHHHHTEEEEC
T ss_pred CCCHHHHHHHHHcCCCeEE
Confidence 9999999999999999874
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=91.81 E-value=0.56 Score=46.36 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHHcC-CCeEE--EeCCCChHHHH-HHHHHhCCceEEEEecCCccCCCC-------CCCch--HHHHHHH
Q 021527 178 LEETESLQKEAMKNK-IELVL--FTTPTTPTDRM-KAIVEASEGFVYLVSSIGVTGARA-------SISGH--VQTLLRE 244 (311)
Q Consensus 178 ~ee~~~~~~~~~~~g-i~~I~--lisp~t~~eri-~~i~~~a~gfiY~vs~~G~TG~~~-------~~~~~--~~~~l~~ 244 (311)
+|+...+...+++.. =.+|. +++- ...+.+ ..+++....||-+-...|.||+.. ++|.. +.+..+.
T Consensus 555 iedL~~~I~~Lr~~~~~~pv~vKl~~~-~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~ 633 (771)
T d1ea0a2 555 IEDLAQLIYDLKQINPDAKVTVKLVSR-SGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQV 633 (771)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECC-TTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCc-CcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHH
Confidence 466666777776633 23332 3332 233443 334444456666656778899742 33321 2222223
Q ss_pred Hhhc-C--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 245 IKES-S--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 245 vk~~-~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+.+. . .+.+++++|+.|+.|+.+.+-.|||+|-+|+++.-.++
T Consensus 634 L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alG 679 (771)
T d1ea0a2 634 LTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMG 679 (771)
T ss_dssp HHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHT
T ss_pred HHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHHHhh
Confidence 3332 1 48999999999999999999999999999999887664
|
| >d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.72 E-value=2.3 Score=37.62 Aligned_cols=158 Identities=14% Similarity=0.194 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC-CCCCCChHHHHHHHHHHHHcCCCHH-HHHHHHHHhhccCCCcEEEEe------c
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY-SDPLADGPVIQAAATRSLARGTNFN-AILSMLKEVVPQMSCPIALFT------Y 147 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf-sDP~aDGp~Iq~a~~~Al~~G~~~~-~~~~~i~~ir~~~~iPiilm~------Y 147 (311)
+...+.++.+.+.|+..|-| |+|- .....+|. .|+ +.+ -+-+.++.||+... -+++++ |
T Consensus 60 d~l~~~ie~~~~lGI~av~LFpvi~~~~Kd~~gs-------eA~----n~d~lv~rAIr~IK~~~p-~l~vi~DVcLc~Y 127 (329)
T d1gzga_ 60 DQLLIEAEEWVALGIPALALFPVTPVEKKSLDAA-------EAY----NPEGIAQRATRALRERFP-ELGIITDVALDPF 127 (329)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECCCGGGCBSSCG-------GGG----CTTSHHHHHHHHHHHHCT-TSEEEEEECSTTT
T ss_pred HHHHHHHHHHHhcCcceEEEEeeeccccccCCcc-------ccc----CcchHHHHHHHHHHHhhC-cEEEEehhccchh
Confidence 57899999999999999877 5432 11111221 010 111 01235666665531 134442 2
Q ss_pred Cc----chh-ccC-H--H----HHHH---HHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC------------
Q 021527 148 YN----PIL-KRG-V--D----NFMS---TVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT------------ 200 (311)
Q Consensus 148 ~n----~i~-~~g-~--~----~fi~---~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis------------ 200 (311)
.. .++ ..| + + ...+ ..+++|+|.|--.|+-.......++.+.++|...+..++
T Consensus 128 T~hGHcGil~~~g~idND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~v~ImsYsaKfaS~fYGP 207 (329)
T d1gzga_ 128 TTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGP 207 (329)
T ss_dssp BTTCCSSCBCTTSCBCHHHHHHHHHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGHH
T ss_pred hhhccCCcccCCCCcCcHHHHHHHHHHHHHHHHccCCeeeccccchhHHHHHHHHHHHcCCcCcceeehhhhhchhhhhh
Confidence 21 122 222 1 2 2333 247799999877788777888899999999997565432
Q ss_pred ----------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE
Q 021527 201 ----------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV 255 (311)
Q Consensus 201 ----------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v 255 (311)
|....|-+.++.. ..+|..+++=.-| . ...+.|+++|+.+++||++
T Consensus 208 FRda~~S~p~~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa-------~--~yLDii~~~~~~~~~Pv~a 276 (329)
T d1gzga_ 208 FRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADMVMVKPG-------M--PYLDIVRRVKDEFRAPTFV 276 (329)
T ss_dssp HHHHHTCHHHHTTCCCTTTSBCTTCSHHHHHHHHHHHHTTCSEEEEESS-------G--GGHHHHHHHHHHHCSCEEE
T ss_pred HHHHhhchhccCCCCccccccCCCCHHHHHHHHHHHHhcCCCeEEeccc-------h--hhhHHHHHHHHccCCCEEE
Confidence 2223344444433 3577766642111 1 2468899999999999954
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=91.69 E-value=3 Score=34.50 Aligned_cols=127 Identities=9% Similarity=0.082 Sum_probs=81.4
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEEEecCcchhc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIALFTYYNPILK 153 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiilm~Y~n~i~~ 153 (311)
.+...+.++.+.+.|.+.+-+-+-+.|| ++-++.++.+|+.+ ++++.+. .|.-
T Consensus 18 ~~~~~~~~~~~~~~Gf~~~KiKvG~~~~---------------------~~D~~~v~~ir~~~g~~~~l~vD--aN~~-- 72 (244)
T d2chra1 18 KRDLDSAVEMIERRRHNRFKVKLGFRSP---------------------QDDLIHMEALSNSLGSKAYLRVD--VNQA-- 72 (244)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEECSSSCH---------------------HHHHHHHHHHHHHTTTTSEEEEE--CTTC--
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCH---------------------HHHHHHHHHHHHhcCCCceEEEe--CCCC--
Confidence 3567778888888999999996544332 22245666777654 4444443 3311
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS 233 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~ 233 (311)
+.++++.++.+.+.++++. |+.. .
T Consensus 73 ----------------------~~~~~A~~~~~~l~~~~i~-------------------------~iEe---------P 96 (244)
T d2chra1 73 ----------------------WDEQVASVYIPELEALGVE-------------------------LIEQ---------P 96 (244)
T ss_dssp ----------------------CCTHHHHHHHHHHHTTTCC-------------------------EEEC---------C
T ss_pred ----------------------cchHHHHHHHHHHhhhhHH-------------------------HHhh---------h
Confidence 1235566666666666643 2221 1
Q ss_pred CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhh
Q 021527 234 ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMV 283 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv 283 (311)
++++..+-++++|+.+++||+.|=.+.++++..++.+.| +|++.+...-+
T Consensus 97 ~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~~ 147 (244)
T d2chra1 97 VGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNM 147 (244)
T ss_dssp SCSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHH
T ss_pred hhhccchhhhhhccceeeeeeecccccccchhhhhhhcceeEEEeeccccc
Confidence 222223457788888899999999999999999998776 68887765444
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.67 E-value=1.7 Score=32.54 Aligned_cols=90 Identities=10% Similarity=0.169 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH---HhCCceEEE-EecCCccCCCCCCCchHHHHHHHHhhc--CCCcE
Q 021527 180 ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV---EASEGFVYL-VSSIGVTGARASISGHVQTLLREIKES--STKPV 253 (311)
Q Consensus 180 e~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~---~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv 253 (311)
....+...++..|+..|..+. +..+-++.+. .....|..+ .... ..| -+-.+.++++|+. .+.||
T Consensus 13 ~~~~l~~~L~~~g~~~v~~a~--~g~eAl~~l~~~~~~~~~~dlillD~~-mP~------~dG~el~~~ir~~~~~~~pi 83 (128)
T d2r25b1 13 NQEVIKRMLNLEGIENIELAC--DGQEAFDKVKELTSKGENYNMIFMDVQ-MPK------VDGLLSTKMIRRDLGYTSPI 83 (128)
T ss_dssp HHHHHHHHHHHTTCCCEEEES--SHHHHHHHHHHHHHHTCCCSEEEECSC-CSS------SCHHHHHHHHHHHSCCCSCE
T ss_pred HHHHHHHHHHHcCCeEEEEEc--ChHHHHHHHHhhhhccCCCCEEEEEeC-CCC------CCHHHHHHHHHHccCCCCeE
Confidence 344577778888987665443 3344444332 234444323 2211 111 1224678888764 36898
Q ss_pred EEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 254 AVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 254 ~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
++=.|-.+.++..+..+.|||+++.
T Consensus 84 I~lT~~~~~~~~~~~~~~G~~~~l~ 108 (128)
T d2r25b1 84 VALTAFADDSNIKECLESGMNGFLS 108 (128)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 8878888899999999999999954
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=91.65 E-value=0.58 Score=35.87 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=53.4
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.+..+.+.-.|.|-+++- -|-.|| ++.++++|+. .++|+++++-++ -.+
T Consensus 34 ~~al~~l~~~~~dlil~D~~--mP~~~G--------------------~el~~~lr~~~~~~pvI~lT~~~------~~~ 85 (140)
T d1qkka_ 34 TEALAGLSADFAGIVISDIR--MPGMDG--------------------LALFRKILALDPDLPMILVTGHG------DIP 85 (140)
T ss_dssp HHHHHTCCTTCCSEEEEESC--CSSSCH--------------------HHHHHHHHHHCTTSCEEEEECGG------GHH
T ss_pred HHHHHHHhccCcchHHHhhc--cCCCCH--------------------HHHHHHHHHhCCCCcEEEEECCC------CHH
Confidence 56677777788999999844 566788 4566666653 679999998543 245
Q ss_pred HHHHHHHcCCcEEEecCCChhhH
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~ 181 (311)
....+.++|++.++.=.+..++.
T Consensus 86 ~~~~a~~~Ga~dyl~KP~~~~~L 108 (140)
T d1qkka_ 86 MAVQAIQDGAYDFIAKPFAADRL 108 (140)
T ss_dssp HHHHHHHTTCCEEEESSCCHHHH
T ss_pred HHHHHHHcCCCEeecCCCCHHHH
Confidence 66778889999998865555553
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=91.64 E-value=0.65 Score=39.87 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=47.7
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
.++-.|.++.+++.+.++...+.|+|.+.+.-|+--+. +-+++.+..+++.+..++|+++
T Consensus 76 vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP~~~~~------------------s~~~~~~~~~~v~~~~~~pi~i-- 135 (293)
T d1f74a_ 76 LIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKF------------------SFPEIKHYYDTIIAETGSNMIV-- 135 (293)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHTCSEEECCCCCSSCC------------------CHHHHHHHHHHHHHHHCCCEEE--
T ss_pred cccccccccHHHHHHHHHHHHHcCCCEeeccCcccccc------------------chHHHHHHHhcccccCCceEEE--
Confidence 35577889999999999999999999999987774331 2234455666666667899877
Q ss_pred cCcch
Q 021527 147 YYNPI 151 (311)
Q Consensus 147 Y~n~i 151 (311)
|-+|.
T Consensus 136 Yn~P~ 140 (293)
T d1f74a_ 136 YSIPF 140 (293)
T ss_dssp ECCSS
T ss_pred Eeecc
Confidence 54444
|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]
Probab=91.63 E-value=1 Score=34.73 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc---CCCcEEEEecCcchhccCHHHHHHHHHHc
Q 021527 90 GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ---MSCPIALFTYYNPILKRGVDNFMSTVRDI 166 (311)
Q Consensus 90 GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~---~~iPiilm~Y~n~i~~~g~~~fi~~~~~a 166 (311)
..|.|-+++- -|-.|| ++.++++|+. .++||++++.++ -......+.++
T Consensus 62 ~pdlillD~~--mP~~~G--------------------~el~~~ir~~~~~~~ipiI~lT~~~------~~~~~~~~~~~ 113 (149)
T d1k66a_ 62 RPAVILLDLN--LPGTDG--------------------REVLQEIKQDEVLKKIPVVIMTTSS------NPKDIEICYSY 113 (149)
T ss_dssp CCSEEEECSC--CSSSCH--------------------HHHHHHHTTSTTGGGSCEEEEESCC------CHHHHHHHHHT
T ss_pred CCCeEEcccc--ccCCCc--------------------HHHHHHHHhccccCCCeEEEEeCCC------CHHHHHHHHHC
Confidence 3688888643 356777 5677888764 378999987543 24567789999
Q ss_pred CCcEEEecCCChhhHHH
Q 021527 167 GIRGLVVPDVPLEETES 183 (311)
Q Consensus 167 GadGviipDlp~ee~~~ 183 (311)
|+++++.=-+..++...
T Consensus 114 Ga~~~l~KP~~~~~L~~ 130 (149)
T d1k66a_ 114 SISSYIVKPLEIDRLTE 130 (149)
T ss_dssp TCSEEEECCSSHHHHHH
T ss_pred CCCEEEECCCCHHHHHH
Confidence 99999885455555443
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=91.45 E-value=2.8 Score=35.56 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCcEEEec---CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe--cCC-ccC
Q 021527 156 VDNFMSTVRDIGIRGLVVP---DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS--SIG-VTG 229 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip---Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs--~~G-~TG 229 (311)
+-++...|.++||||+.++ |.-.-....+....+....+.=+=.+|+ ++.++...+.....+.+|+ ..- +|.
T Consensus 26 ~~~~a~~~~~~GadgITvH~R~DrRHI~~~Dv~~l~~~~~~~lNlE~a~~--~e~i~ia~~~kP~qvtLVPe~r~elTTe 103 (242)
T d1m5wa_ 26 PVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVT--EEMLAIAVETKPHFCCLVPEKRQEVTTE 103 (242)
T ss_dssp HHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSEEEEEECSS--HHHHHHHHHHCCSEEEECCCCSSCSSCC
T ss_pred HHHHHHHHHHcCCCeEEeCCCCCccccchHHHHHHHHHhhcccccccccc--hhHHHHHHHhccceEEEeecCccccCcC
Confidence 3468899999999999995 4321112223333333344443445664 4666555566778888874 222 232
Q ss_pred CCCCCC---chHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 230 ARASIS---GHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 230 ~~~~~~---~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
....+. ..+.+.++++++. ..+-+++. -++++++...+.|||.|=+=|.
T Consensus 104 gGld~~~~~~~L~~~i~~l~~~girvSLFiD---pd~~~i~~a~~lGad~IElhTG 156 (242)
T d1m5wa_ 104 GGLDVAGQRDKMRDACKRLADAGIQVSLFID---ADEEQIKAAAEVGAPFIEIHTG 156 (242)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCEEEEEEC---SCHHHHHHHHHTTCSEEEEECH
T ss_pred CceeehhhHHHHHHHHHHHHhcCCeEEEEec---cchhhHHHHhhcCcceeeeecc
Confidence 222222 3366778888775 23456665 4678999999999999966544
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=91.42 E-value=2.3 Score=36.84 Aligned_cols=139 Identities=9% Similarity=0.086 Sum_probs=78.7
Q ss_pred ChhHHHHHHHHHHHcCCccEEEEEeCCCCC-hhhHHHHHHHHHHCCCCEEEEc---CCCCCCCCChHHHHHHHHHHHHcC
Q 021527 46 PTVGLAETFTRLKKQGKVALIPYITAGDPD-LSTTAEALKLLDSCGSDIIELG---VPYSDPLADGPVIQAAATRSLARG 121 (311)
Q Consensus 46 ~m~~i~~~f~~~~~~~~~~li~yi~~G~P~-~~~~~e~~~~L~~~GaD~IElG---~PfsDP~aDGp~Iq~a~~~Al~~G 121 (311)
+++.+-+...++.+.-...+|.=.-.||-+ .....+.++.++++||-.++|- .|-.-...+|+.+
T Consensus 61 ~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~----------- 129 (289)
T d1muma_ 61 TLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAI----------- 129 (289)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCB-----------
T ss_pred ChHHHHHHHHHHhcccCCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCcccccccccccccce-----------
Confidence 344444444444444456777777788876 4688899999999999999992 1211122233222
Q ss_pred CCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE
Q 021527 122 TNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~ 197 (311)
+..++...-++..++. .+-.++++.-.+.....|+++-+++ ..++|+|++.++-+.- ..+++..++..+..+..
T Consensus 130 ~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~~~~~--~~~~~~~~~~~~~Pl~~ 207 (289)
T d1muma_ 130 VSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAITE--LAMYRQFADAVQVPILA 207 (289)
T ss_dssp CCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTCCC--HHHHHHHHHHHCSCBEE
T ss_pred ecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHHHHHHHHhhhcCCcEEEecCCCC--HHHHHHHHHhcCCCEEE
Confidence 1222222233332222 2323555543344445688888875 4779999998876542 23344445555555443
|
| >d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain species: Clostridium sticklandii [TaxId: 1511]
Probab=91.23 E-value=0.24 Score=39.71 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhc-C--CCcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 237 HVQTLLREIKES-S--TKPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 237 ~~~~~l~~vk~~-~--~~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
.+.+.++.+|+. . ++||++|+++-+++.+ .+.|||++.
T Consensus 98 ~~~~~i~~l~~~g~~d~v~vivGG~~~~~~~a---~~~GaD~~f 138 (160)
T d1xrsb1 98 NMTHLIELLEAEGLRDRFVLLCGGPRINNEIA---KELGYDAGF 138 (160)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEECTTCCHHHH---HTTTCSEEE
T ss_pred HHHHHHHHHHHcCCCCceEEEEcCCCCCHHHH---HHcCCCEEc
Confidence 355678888875 2 4899999999887654 457999883
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.11 E-value=0.17 Score=38.17 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=54.4
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.-.|.+-+++-. |-.|| ++.++++|+. .++|+++++-++. .+
T Consensus 35 ~eal~~~~~~~~dlvl~D~~m--P~~~G--------------------~el~~~ir~~~~~~piI~lt~~~~------~~ 86 (121)
T d1ys7a2 35 AEALRSATENRPDAIVLDINM--PVLDG--------------------VSVVTALRAMDNDVPVCVLSARSS------VD 86 (121)
T ss_dssp HHHHHHHHHSCCSEEEEESSC--SSSCH--------------------HHHHHHHHHTTCCCCEEEEECCCT------TT
T ss_pred HHHHHHHHhCCCCEEEEEeec--cCccc--------------------HHHHHHHHhcCCCCEEEEEEeeCC------HH
Confidence 566777778889999997443 55677 4567777754 5799999875432 22
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHH-HHHHHHH
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETES-LQKEAMK 190 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~-~~~~~~~ 190 (311)
....+.++|+++++.=-+..++... +...+++
T Consensus 87 ~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r 119 (121)
T d1ys7a2 87 DRVAGLEAGADDYLVKPFVLAELVARVKALLRR 119 (121)
T ss_dssp CCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHc
Confidence 3445778999999885455555332 3444443
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=91.10 E-value=0.64 Score=38.86 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=67.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.++..+.++.|.+.+..++|==+|..| ++..++++++.++||.+--. .+
T Consensus 74 ~~~~A~~~~~~l~~~~~~~iEeP~~~~~-------------------------~~~~~~l~~~~~ipIa~gE~-----~~ 123 (243)
T d1nu5a1 74 DEQTASIWIPRLEEAGVELVEQPVPRAN-------------------------FGALRRLTEQNGVAILADES-----LS 123 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCEEECCSCTTC-------------------------HHHHHHHHHHCSSEEEESTT-----CC
T ss_pred cchhHHHHHHHhcchhhhhhhhhhhhcc-------------------------ccccccchhccccccccccc-----cc
Confidence 4577888888888888888885333322 24567788888999887422 23
Q ss_pred CHHHHHHHHHHcCCcEEEecCC----ChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDV----PLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDl----p~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
+..+|.+.+....+|+ +.+|+ .+.+..++...++.+|+...+-....++.
T Consensus 124 ~~~~~~~~i~~~~~d~-~~~d~~~~GGit~~~~i~~~a~~~gi~~~~~~~~~s~i 177 (243)
T d1nu5a1 124 SLSSAFELARDHAVDA-FSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTV 177 (243)
T ss_dssp SHHHHHHHHHTTCCSE-EEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHH
T ss_pred cchhhhhccccccccc-cccccccccchHHHHHHHHHHHHcCCCcccccccchhh
Confidence 5566666555544666 57775 45788899999999999865443334443
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=91.06 E-value=0.41 Score=41.36 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=63.0
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHH-------HHcCCC------HHHHHHHH
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRS-------LARGTN------FNAILSML 131 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~A-------l~~G~~------~~~~~~~i 131 (311)
+-+.|.|+.|- +...++...+.+.|.+.|.+--|-++ -.-|++....+ -..|+| .+++.+.+
T Consensus 118 vdG~IipDlp~-eE~~~~~~~~~~~gl~~I~lvaPtt~----~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i 192 (261)
T d1rd5a_ 118 VHGLIVPDLPY-VAAHSLWSEAKNNNLELVLLTTPAIP----EDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLI 192 (261)
T ss_dssp CCEEECTTCBT-TTHHHHHHHHHHTTCEECEEECTTSC----HHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHH
T ss_pred ceeeeecCccH-HHHHHHHHHHhccccceEEEeccCCc----hhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHH
Confidence 34455666654 44557777888888888888765543 34455444332 112331 13567788
Q ss_pred HHhhccCCCcEEEEecCcchhccCH--HHHHHHHHHcCCcEEEecC
Q 021527 132 KEVVPQMSCPIALFTYYNPILKRGV--DNFMSTVRDIGIRGLVVPD 175 (311)
Q Consensus 132 ~~ir~~~~iPiilm~Y~n~i~~~g~--~~fi~~~~~aGadGviipD 175 (311)
+++|+.+++|+++- .|+ .+-++.+.+.|+||+++..
T Consensus 193 ~~ik~~t~~Pi~vG--------FGI~~~e~v~~~~~~gaDGvIVGS 230 (261)
T d1rd5a_ 193 QEVKKVTNKPVAVG--------FGISKPEHVKQIAQWGADGVIIGS 230 (261)
T ss_dssp HHHHHHCSSCEEEE--------SCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHhhhccCCCeEEE--------cCCCCHHHHHHHHhcCCCEEEECH
Confidence 88998899998773 122 4567778888999999973
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=91.01 E-value=0.38 Score=41.22 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=52.3
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHH-----------H--HcCCCHHHHHHHHHHhhccCC
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRS-----------L--ARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~A-----------l--~~G~~~~~~~~~i~~ir~~~~ 139 (311)
+||...+++..+.|.+-|..++=.. .|-|+..+....+ + ..|..- ...++.|+++.+
T Consensus 108 ~PD~~etl~Aae~Lv~eGF~VlpY~-------~~D~v~ak~Le~~Gc~avMPlgsPIGSg~Gl~n---~~~l~~i~~~~~ 177 (251)
T d1xm3a_ 108 LPDPVETLKASEQLLEEGFIVLPYT-------SDDVVLARKLEELGVHAIMPGASPIGSGQGILN---PLNLSFIIEQAK 177 (251)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEEE-------CSCHHHHHHHHHHTCSCBEECSSSTTCCCCCSC---HHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEec-------CCCHHHHHHHHHcCChhHHHhhhhhhcCCCcCC---hHHHHHHHhcCC
Confidence 3555677777777777777665442 1123332211111 0 023222 236677777889
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
+||++..- .|.-.....+-|.|+|||++.
T Consensus 178 vPvIvDAG------IG~pSdAa~AMElG~daVLvN 206 (251)
T d1xm3a_ 178 VPVIVDAG------IGSPKDAAYAMELGADGVLLN 206 (251)
T ss_dssp SCBEEESC------CCSHHHHHHHHHTTCSEEEES
T ss_pred ccEEEecC------CCCHHHHHHHHHccCCEEEec
Confidence 99999752 355677888999999999995
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.98 E-value=0.99 Score=33.60 Aligned_cols=75 Identities=17% Similarity=0.363 Sum_probs=51.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCcchhccCHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n~i~~~g~~ 157 (311)
.+.++.+.+.-.|.+-+++ .=|-.|| ++.++++|+. ...|+++++.++ -.
T Consensus 37 ~~al~~~~~~~~dlillD~--~mP~~dG--------------------~e~~~~ir~~~~~~~~ii~~t~~~------~~ 88 (123)
T d1dz3a_ 37 QDCLQMLEEKRPDILLLDI--IMPHLDG--------------------LAVLERIRAGFEHQPNVIMLTAFG------QE 88 (123)
T ss_dssp HHHHHHHHHHCCSEEEEES--CCSSSCH--------------------HHHHHHHHHHCSSCCEEEEEEETT------CH
T ss_pred HHHHHHHHhcCCCEEEEcC--CCCCCCH--------------------HHHHHHHHhcCCCCCeEEEEECcC------CH
Confidence 5666667777899999985 4477788 4566777653 334677776433 35
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHH
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETE 182 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~ 182 (311)
.....+.+.|+++++.=-+..++..
T Consensus 89 ~~~~~a~~~Ga~~~l~KP~~~~~L~ 113 (123)
T d1dz3a_ 89 DVTKKAVELGASYFILKPFDMENLA 113 (123)
T ss_dssp HHHHHHHHTTCEEEEECSSCCTTHH
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHH
Confidence 6777899999999988544445543
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.96 E-value=1.1 Score=33.34 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=52.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.-.|.|-+++ .-|-.|| ++.++++|+. ..+|+++++-++ -..
T Consensus 35 ~~al~~l~~~~~dlillD~--~mp~~~g--------------------~~~~~~lr~~~~~~piI~lt~~~------~~~ 86 (122)
T d1kgsa2 35 EEGMYMALNEPFDVVILDI--MLPVHDG--------------------WEILKSMRESGVNTPVLMLTALS------DVE 86 (122)
T ss_dssp HHHHHHHHHSCCSEEEEES--CCSSSCH--------------------HHHHHHHHHTTCCCCEEEEESSC------HHH
T ss_pred HHHHHHHHhhCcccccccc--ccccchh--------------------HHHHHHHHhcCCCCcEEEEcCCC------CHH
Confidence 5667777788899999874 3366677 4566667654 578999987543 345
Q ss_pred HHHHHHHcCCcEEEecCCChhhH
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~ 181 (311)
....+.++|+++++.=-+..++.
T Consensus 87 ~~~~~~~~Ga~~yl~KP~~~~~L 109 (122)
T d1kgsa2 87 YRVKGLNMGADDYLPKPFDLREL 109 (122)
T ss_dssp HHHHTCCCCCSEEEESSCCHHHH
T ss_pred HHHHHHHcCCceeecCCCCHHHH
Confidence 66778899999998864555553
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=90.89 E-value=1.7 Score=32.84 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCC
Q 021527 182 ESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGIS 260 (311)
Q Consensus 182 ~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIs 260 (311)
.-++..++..+--.+.... .+..+-++.+.+.....+.+--..+ | .+-.++++++|+.. +.|+++=.+-.
T Consensus 16 ~~l~~~L~~~~~~~~v~~a-~~~~~al~~~~~~~~DlvllD~~mP--~------~~G~el~~~ir~~~~~~~vivlt~~~ 86 (138)
T d1a04a2 16 TGVKQLISMAPDITVVGEA-SNGEQGIELAESLDPDLILLDLNMP--G------MNGLETLDKLREKSLSGRIVVFSVSN 86 (138)
T ss_dssp HHHHHHHTTCTTEEEEEEE-SSHHHHHHHHHHHCCSEEEEETTST--T------SCHHHHHHHHHHSCCCSEEEEEECCC
T ss_pred HHHHHHHHhCCCcEEEEEE-CCHHHHHHHHHhcCCCEEEEecCCC--C------CCHHHHHHHHHhhCCCCCEEEEEEEC
Confidence 3455555554421222222 3445656555555445544421111 1 12357899998864 68888877888
Q ss_pred CHHHHHHHHHcCCcEEEE
Q 021527 261 KPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIV 278 (311)
+.+.+.+..++||+|.+.
T Consensus 87 ~~~~~~~a~~~Ga~~yl~ 104 (138)
T d1a04a2 87 HEEDVVTALKRGADGYLL 104 (138)
T ss_dssp CHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 899999999999999976
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=90.85 E-value=1.3 Score=32.94 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCC
Q 021527 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGI 259 (311)
Q Consensus 181 ~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGI 259 (311)
...+...++..|.... .. .+.++-+..+.+.....+.+ ... ..| -+-.++++++|+.. +.|+++=.|-
T Consensus 16 ~~~l~~~L~~~g~~v~-~a--~~~~~al~~~~~~~~dlvi~-D~~-mp~------~~G~e~~~~lr~~~~~~~iI~lt~~ 84 (123)
T d1dbwa_ 16 RKSLAFMLTMNGFAVK-MH--QSAEAFLAFAPDVRNGVLVT-DLR-MPD------MSGVELLRNLGDLKINIPSIVITGH 84 (123)
T ss_dssp HHHHHHHHHHTTCEEE-EE--SCHHHHHHHGGGCCSEEEEE-ECC-STT------SCHHHHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHHHHCCCEEE-EE--CCHHHHHHHHhhcCCcEEEE-ecc-Ccc------ccchHHHHHHHhcCCCCeEEEEEee
Confidence 4456777888897643 22 34455554443322233322 211 111 12357899998864 7898888888
Q ss_pred CCHHHHHHHHHcCCcEEEE
Q 021527 260 SKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 260 st~e~v~~v~~~GADGvIV 278 (311)
.+.+...+..+.||++.+.
T Consensus 85 ~~~~~~~~a~~~Ga~~yl~ 103 (123)
T d1dbwa_ 85 GDVPMAVEAMKAGAVDFIE 103 (123)
T ss_dssp TCHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 8999999999999999865
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=90.78 E-value=1.5 Score=37.85 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
+.+.....++.|.+.++=-++.+.+.. +.....++.+.+.|+|++=+-.|++.- ...
T Consensus 142 ~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~~~-~~~---------------- 204 (291)
T d1to3a_ 142 VKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGK-GAR---------------- 204 (291)
T ss_dssp HHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGC-SCH----------------
T ss_pred HHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCCch-hhh----------------
Confidence 444445555566554444444333322 246777888889999999998887321 111
Q ss_pred HHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 124 ~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
.+.....+++.....+|+++++---+. -...+.++.+.++|+.|+++.
T Consensus 205 -~~~~~~~~~~~~~~~~p~vvLs~G~~~--~~f~~~l~~A~~aGa~G~~~G 252 (291)
T d1to3a_ 205 -SDLLTASQRLNGHINMPWVILSSGVDE--KLFPRAVRVAMEAGASGFLAG 252 (291)
T ss_dssp -HHHHHHHHHHHHTCCSCEEECCTTSCT--TTHHHHHHHHHHTTCCEEEES
T ss_pred -HHHHHHHHHHhhcCCCcEEEEeCCCCH--HHHHHHHHHHHHCCCeEEEeC
Confidence 122334445555678999888632111 123455567888999999995
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=90.75 E-value=1.1 Score=33.07 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=50.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.-.|.+-+++-. |-.|| ++.++++|+. .++|+++++-++ -..
T Consensus 35 ~eal~~~~~~~~dlillD~~m--P~~~G--------------------~el~~~lr~~~~~~pvi~lt~~~------~~~ 86 (119)
T d1peya_ 35 LQALDIVTKERPDLVLLDMKI--PGMDG--------------------IEILKRMKVIDENIRVIIMTAYG------ELD 86 (119)
T ss_dssp HHHHHHHHHHCCSEEEEESCC--TTCCH--------------------HHHHHHHHHHCTTCEEEEEESSC------CHH
T ss_pred HHHHHHHHhCCCCEEEEeccC--CCCCH--------------------HHHHHHHHHhCCCCcEEEEecCC------CHH
Confidence 456666677779999997554 55677 4566666653 578999987543 245
Q ss_pred HHHHHHHcCCcEEEecCCChhh
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEE 180 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee 180 (311)
....+.++|+++++.=-+..++
T Consensus 87 ~~~~a~~~Ga~~yl~KP~~~~~ 108 (119)
T d1peya_ 87 MIQESKELGALTHFAKPFDIDE 108 (119)
T ss_dssp HHHHHHHTTCCEEEESSCCHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHH
Confidence 5667899999999875344444
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=90.68 E-value=0.3 Score=44.52 Aligned_cols=42 Identities=12% Similarity=-0.044 Sum_probs=32.0
Q ss_pred HHHhhcCCCcEEEeeCCCCH-HHHHHHHHcCCcEEEEhhHhhc
Q 021527 243 REIKESSTKPVAVGFGISKP-EHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 243 ~~vk~~~~~Pv~vGfGIst~-e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.+|+.+++||++-+||+++ +..+.+.+-|||.|-+|=+++.
T Consensus 310 ~~ik~~~~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~lia 352 (399)
T d1oyaa_ 310 DFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS 352 (399)
T ss_dssp THHHHHCCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred HHHHHHhCCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 34667789999999999754 5556666667999999977754
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=90.58 E-value=0.82 Score=34.41 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc---CCCcEEEe
Q 021527 180 ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES---STKPVAVG 256 (311)
Q Consensus 180 e~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~---~~~Pv~vG 256 (311)
....+...+.+.|+..+..+ .+..+-++.+.+.....+.+ ... ..| .+-.++++++|+. .++|+++=
T Consensus 18 ~~~~l~~~L~~~g~~~v~~a--~~~~~al~~l~~~~~dlii~-D~~-mP~------~~G~el~~~lr~~~~~~~~pii~l 87 (129)
T d1p6qa_ 18 SRLLLGDALQQLGFKQITAA--GDGEQGMKIMAQNPHHLVIS-DFN-MPK------MDGLGLLQAVRANPATKKAAFIIL 87 (129)
T ss_dssp HHHHHHHHHHTTTCSCEECC--SSHHHHHHHHHTSCCSEEEE-CSS-SCS------SCHHHHHHHHTTCTTSTTCEEEEC
T ss_pred HHHHHHHHHHHCCCeEEEEE--CCHHHHHHHHHhCCCCeEEe-eee-cCC------CChHHHHHHHHhCcccCCCeEEEE
Confidence 34557778888888654432 34445555554433333333 211 111 1235789999884 26898888
Q ss_pred eCCCCHHHHHHHHHcCCcEEEE
Q 021527 257 FGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 257 fGIst~e~v~~v~~~GADGvIV 278 (311)
.|-.+.+...+..+.|+|+++.
T Consensus 88 t~~~~~~~~~~a~~~G~~~~l~ 109 (129)
T d1p6qa_ 88 TAQGDRALVQKAAALGANNVLA 109 (129)
T ss_dssp CSCCCHHHHHHHHHHTCSCEEC
T ss_pred EecCCHHHHHHHHHCCCCEEEE
Confidence 8888899999999999998743
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.58 E-value=0.42 Score=35.84 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeC
Q 021527 180 ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFG 258 (311)
Q Consensus 180 e~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfG 258 (311)
-...+...++..|.++... .+..+-++.+.+.....+.+--... | .+-.++++++|+.. ++|+++=.+
T Consensus 13 ~~~~l~~~L~~~g~~v~~a---~~~~eal~~~~~~~~dlvl~D~~mP--~------~~G~el~~~ir~~~~~~piI~lt~ 81 (121)
T d1ys7a2 13 VLASLERGLRLSGFEVATA---VDGAEALRSATENRPDAIVLDINMP--V------LDGVSVVTALRAMDNDVPVCVLSA 81 (121)
T ss_dssp HHHHHHHHHHHTTCEEEEE---SSHHHHHHHHHHSCCSEEEEESSCS--S------SCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHhCCCCEEEEEeecc--C------cccHHHHHHHHhcCCCCEEEEEEe
Confidence 3455778888889875432 2445666655554444443321111 1 12357889998864 789888788
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
-.+.++..+..+.|||+.+. |.+. +++.++.++..+
T Consensus 82 ~~~~~~~~~a~~~Ga~dyl~-----KP~~----~~~L~~~i~~~l 117 (121)
T d1ys7a2 82 RSSVDDRVAGLEAGADDYLV-----KPFV----LAELVARVKALL 117 (121)
T ss_dssp CCTTTCCCTTTTTTCSEEEE-----SSCC----HHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHCCCCEEEE-----CCCC----HHHHHHHHHHHH
Confidence 88888999999999999854 5442 234455555444
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=90.50 E-value=1.5 Score=43.40 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHHcCC-CeEE--EeCCCChHHHH-HHHHHhCCceEEEEecCCccCCC-------CCCCch--HHHHHHH
Q 021527 178 LEETESLQKEAMKNKI-ELVL--FTTPTTPTDRM-KAIVEASEGFVYLVSSIGVTGAR-------ASISGH--VQTLLRE 244 (311)
Q Consensus 178 ~ee~~~~~~~~~~~gi-~~I~--lisp~t~~eri-~~i~~~a~gfiY~vs~~G~TG~~-------~~~~~~--~~~~l~~ 244 (311)
+|+...+...+++.+- ..|. +++.. ....+ ..+++....||-+-...|.||+. .++|.. +.+.-+.
T Consensus 582 iedL~q~I~~Lr~~~~~~pv~vKl~~~~-g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a~~~ 660 (809)
T d1ofda2 582 IEDLAQLIYDLHQINPEAQVSVKLVAEI-GIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRV 660 (809)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEEECST-THHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeec-ChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHHHHHH
Confidence 4677777777777532 2332 33322 23333 33445455777666678889974 234431 2222223
Q ss_pred Hhhc-C--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 245 IKES-S--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 245 vk~~-~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+.+. . .+.+++++|+.|+.|+.+.+-.|||+|-+|+++.-.++
T Consensus 661 L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alG 706 (809)
T d1ofda2 661 LMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEG 706 (809)
T ss_dssp HHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTT
T ss_pred HHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHH
Confidence 3332 2 48999999999999999999999999999999887663
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=90.47 E-value=1.1 Score=34.18 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=43.3
Q ss_pred CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc---CCCcEEEEecCcchhccCHHHHHHHHHHcC
Q 021527 91 SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ---MSCPIALFTYYNPILKRGVDNFMSTVRDIG 167 (311)
Q Consensus 91 aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~---~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG 167 (311)
.|.|-+++-- |-.|| ++.++++|+. -++||++++-++ -+.....+.++|
T Consensus 56 pdlillD~~m--P~~dG--------------------~el~~~ir~~~~~~~iPvI~ls~~~------~~~~~~~a~~~G 107 (140)
T d1k68a_ 56 PDLILLDLNL--PKKDG--------------------REVLAEIKSDPTLKRIPVVVLSTSI------NEDDIFHSYDLH 107 (140)
T ss_dssp CSEEEECSSC--SSSCH--------------------HHHHHHHHHSTTGGGSCEEEEESCC------CHHHHHHHHHTT
T ss_pred CCEEEEeecc--ccccC--------------------hHHHHHHHhCcccCCCcEEEEeCCC------CHHHHHHHHHCC
Confidence 5888887443 56677 4567777653 368999987543 245677888999
Q ss_pred CcEEEecCCChhhHH
Q 021527 168 IRGLVVPDVPLEETE 182 (311)
Q Consensus 168 adGviipDlp~ee~~ 182 (311)
+++++.=-+..++..
T Consensus 108 a~~yl~KP~~~~~L~ 122 (140)
T d1k68a_ 108 VNCYITKSANLSQLF 122 (140)
T ss_dssp CSEEEECCSSHHHHH
T ss_pred CCEEEECCCCHHHHH
Confidence 999988534344433
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.41 E-value=1.4 Score=32.48 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=60.1
Q ss_pred EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-
Q 021527 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS- 249 (311)
Q Consensus 171 viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~- 249 (311)
+++.|=-..-...+...+++.|.++.. + .+..+-+..+.+.....+.+--..+ | .+-.+.++++|+..
T Consensus 5 ILiVDDd~~~~~~l~~~L~~~g~~v~~-a--~~~~~al~~l~~~~~dlillD~~mp--~------~~G~~~~~~~r~~~~ 73 (121)
T d1mvoa_ 5 ILVVDDEESIVTLLQYNLERSGYDVIT-A--SDGEEALKKAETEKPDLIVLDVMLP--K------LDGIEVCKQLRQQKL 73 (121)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEE-E--SSHHHHHHHHHHHCCSEEEEESSCS--S------SCHHHHHHHHHHTTC
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEE-E--CCHHHHHHHHhcccccEEEeccccc--C------CCCchhhhhhhccCC
Confidence 344442223355577888899987443 2 3445666666555555544421111 1 11246788888764
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
..||++=.+-.+.++..+..+.|||+.+.
T Consensus 74 ~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~ 102 (121)
T d1mvoa_ 74 MFPILMLTAKDEEFDKVLGLELGADDYMT 102 (121)
T ss_dssp CCCEEEEECTTCCCCHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeeCCHHHHHHHHHCCCCEEEE
Confidence 57887777777778888999999999754
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=90.40 E-value=0.75 Score=35.21 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCC
Q 021527 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGI 259 (311)
Q Consensus 181 ~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGI 259 (311)
...+...+...|...... .+..+-+..+.+.....+.+ ... ..+ .+-.++++++|+. .++||++=.|-
T Consensus 13 ~~~l~~~L~~~g~~v~~~---~~~~~al~~l~~~~~dlil~-D~~-mP~------~~G~el~~~lr~~~~~~pvI~lT~~ 81 (140)
T d1qkka_ 13 RKAMQQTLELAGFTVSSF---ASATEALAGLSADFAGIVIS-DIR-MPG------MDGLALFRKILALDPDLPMILVTGH 81 (140)
T ss_dssp HHHHHHHHHHTTCEEEEE---SCHHHHHHTCCTTCCSEEEE-ESC-CSS------SCHHHHHHHHHHHCTTSCEEEEECG
T ss_pred HHHHHHHHHHCCCEEEEe---CChHHHHHHHhccCcchHHH-hhc-cCC------CCHHHHHHHHHHhCCCCcEEEEECC
Confidence 445667778888765543 34455554443333343333 211 111 1234788888885 47999998888
Q ss_pred CCHHHHHHHHHcCCcEEEEh
Q 021527 260 SKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 260 st~e~v~~v~~~GADGvIVG 279 (311)
++.+.+.+..+.||+..++=
T Consensus 82 ~~~~~~~~a~~~Ga~dyl~K 101 (140)
T d1qkka_ 82 GDIPMAVQAIQDGAYDFIAK 101 (140)
T ss_dssp GGHHHHHHHHHTTCCEEEES
T ss_pred CCHHHHHHHHHcCCCEeecC
Confidence 89999999999999999874
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=90.21 E-value=0.16 Score=43.89 Aligned_cols=94 Identities=11% Similarity=0.162 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHcCCCeEEEe--CCC-ChHHHHHHHHH--hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc---CC
Q 021527 179 EETESLQKEAMKNKIELVLFT--TPT-TPTDRMKAIVE--ASEGFVYLVSSIGVTGARASISGHVQTLLREIKES---ST 250 (311)
Q Consensus 179 ee~~~~~~~~~~~gi~~I~li--sp~-t~~eri~~i~~--~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~---~~ 250 (311)
+|...+.+.|+.+|.. +-.+ ++. +.++.+....+ ...|..|+-+.+|..+. ...++++.-+.+.++.. .+
T Consensus 120 ~ei~~v~~~~~~~~~~-lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFvKTSTG~~~~-gat~~~v~~m~~~i~~~~~~~~ 197 (250)
T d1p1xa_ 120 DLVKACKEACAAANVL-LKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAV-NATPESARIMMEVIRDMGVEKT 197 (250)
T ss_dssp HHHHHHHHHHHHTTCE-EEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCSSC-CCCHHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHHHHhhccCCce-EEEEEeccccCcHHHHHHHHHHHHHcCcCeEEecCCcCCC-CCCHHHHHHHHHHhhhhccCcc
Confidence 3455667777777752 2222 111 22333322222 34566777766663211 12234444444445543 24
Q ss_pred CcEEEeeCCCCHHHHHHHHHcCCc
Q 021527 251 KPVAVGFGISKPEHVQQVAGWGAD 274 (311)
Q Consensus 251 ~Pv~vGfGIst~e~v~~v~~~GAD 274 (311)
+.|=+.+||+|.+++.+++++|++
T Consensus 198 vgIKasGGIrt~~~a~~~i~~ga~ 221 (250)
T d1p1xa_ 198 VGFKPAGGVRTAEDAQKYLAIADE 221 (250)
T ss_dssp CEEECBSSCCSHHHHHHHHHHHHH
T ss_pred eeeEecCCCCCHHHHHHHHHHHHH
Confidence 667779999999999999999887
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.13 E-value=1.2 Score=33.72 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=54.5
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~ 148 (311)
++.++ .+.+..+.+...|.|-+++-. |-.|| ++.++++|+. .++||++++-+
T Consensus 37 ~a~~g-----~ea~~~~~~~~~dlillD~~m--P~~dG--------------------~el~~~ir~~~~~~pii~lt~~ 89 (133)
T d2ayxa1 37 TANDG-----VDALNVLSKNHIDIVLSDVNM--PNMDG--------------------YRLTQRIRQLGLTLPVIGVTAN 89 (133)
T ss_dssp EECCS-----HHHHHHHHHSCCSEEEEEESS--CSSCC--------------------HHHHHHHHHHHCCSCEEEEESS
T ss_pred EECcH-----HHHHHHHhccCceEEEEeccC--CCCCH--------------------HHHHHHHHHhCCCCCEEEEecc
Confidence 55555 566777788899999997555 55677 4466666643 57899888643
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhH
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~ 181 (311)
+-......+.+.|+++++.=-+..++.
T Consensus 90 ------~~~~~~~~~~~~G~~~~l~KP~~~~~L 116 (133)
T d2ayxa1 90 ------ALAEEKQRCLESGMDSCLSKPVTLDVI 116 (133)
T ss_dssp ------TTSHHHHHHHHCCCEEEEESSCCHHHH
T ss_pred ------CCHHHHHHHHHcCCCEEEECCCCHHHH
Confidence 224466778999999998864544543
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=90.08 E-value=0.58 Score=39.30 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=67.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.++..+.++.|++.+..++|==+|..| ++..++++++.++||..--.. +
T Consensus 74 ~~~~A~~~~~~l~~~~i~~iEeP~~~~d-------------------------~~~~~~l~~~~~ipia~~E~~-----~ 123 (244)
T d2chra1 74 DEQVASVYIPELEALGVELIEQPVGREN-------------------------TQALRRLSDNNRVAIMADESL-----S 123 (244)
T ss_dssp CTHHHHHHHHHHHTTTCCEEECCSCSSC-------------------------HHHHHHHHHHCSSEEEESSSC-----C
T ss_pred chHHHHHHHHHHhhhhHHHHhhhhhhcc-------------------------chhhhhhccceeeeeeecccc-----c
Confidence 3467888888888888888885434333 246678888889998774222 3
Q ss_pred CHHHHHHHHHHcCCcEEEecCC----ChhhHHHHHHHHHHcCCCeEEEeCCCCh
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDV----PLEETESLQKEAMKNKIELVLFTTPTTP 204 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDl----p~ee~~~~~~~~~~~gi~~I~lisp~t~ 204 (311)
+..+|.+.+..-.+|+ +.+|+ .+.+..++...++.+|+....-....++
T Consensus 124 ~~~~~~~~i~~~~~d~-v~~d~~~~GGit~~~~i~~~a~~~gi~~~~~~~~~~~ 176 (244)
T d2chra1 124 TLASAFDLARDRSVDV-FSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDST 176 (244)
T ss_dssp SHHHHHHHHTTTCCSE-ECCCHHHHTSHHHHHHHHHHHHHHTCEECCCCCSCCH
T ss_pred ccchhhhhhhcceeEE-EeeccccccchHHHHHHHHHHHHcCCCeeeccccccc
Confidence 4567777665555666 57775 4568888999999999875433333444
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=90.08 E-value=0.98 Score=39.24 Aligned_cols=44 Identities=18% Similarity=0.081 Sum_probs=34.8
Q ss_pred hHHHHHHHHhhcCCCcEEE-e-eCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 237 HVQTLLREIKESSTKPVAV-G-FGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 237 ~~~~~l~~vk~~~~~Pv~v-G-fGIst~e~v~~v~~~GADGvIVGS 280 (311)
...+.++++++.++.|+++ + ..+.++++++++.++|||+++|+.
T Consensus 145 ~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~ 190 (329)
T d1p0ka_ 145 GALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGG 190 (329)
T ss_dssp THHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC
T ss_pred chHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcC
Confidence 4557789999988888764 2 233579999999999999999964
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.02 E-value=4.7 Score=34.22 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=101.1
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
++.+-.-+.-|-+ +..+.+.++..-+- +|++=+|..-+- +.+ ++.++---++-++.+++
T Consensus 12 ~~GlTmv~DkGlg-l~~leD~Le~ag~y-ID~~K~g~Gt~~-l~p------------------~~~l~eKI~l~~~~~V~ 70 (251)
T d1qwga_ 12 QRGLTVVLDKGLP-PKFVEDYLKVCGDY-IDFVKFGWGTSA-VID------------------RDVVKEKINYYKDWGIK 70 (251)
T ss_dssp CCCCEEEEESSCC-HHHHHHHHHHHGGG-CSEEEECTTGGG-GSC------------------HHHHHHHHHHHHTTTCE
T ss_pred cCCcEEEeeCCCC-HHHHHHHHHhhhhh-eeEEEecCceee-ecC------------------HHHHHHHHHHHHHcCCe
Confidence 4455445555544 34555555555444 999999844321 111 12222222334567888
Q ss_pred EEEEe-cCcc-hhccCHHHHHHHHHHcCCcEEEec----CCChhhHHHHHHHHHHcCCCeEEEeCCC--------ChHHH
Q 021527 142 IALFT-YYNP-ILKRGVDNFMSTVRDIGIRGLVVP----DVPLEETESLQKEAMKNKIELVLFTTPT--------TPTDR 207 (311)
Q Consensus 142 iilm~-Y~n~-i~~~g~~~fi~~~~~aGadGviip----Dlp~ee~~~~~~~~~~~gi~~I~lisp~--------t~~er 207 (311)
+..-+ ++.- +.+...++|++.|++.|.+.+=+. |+|.++..++++.++++|+.++.=+... +++++
T Consensus 71 v~~GGtlfE~a~~qg~~~~y~~~~~~lGf~~iEiSdg~~~i~~~~~~~~I~~~~~~G~~V~~EvG~K~~~~~~~~~~~~~ 150 (251)
T d1qwga_ 71 VYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDR 150 (251)
T ss_dssp EEECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHH
T ss_pred EeCCcHHHHHHHHcCCHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCEEeecccCCCCCCccccCHHHH
Confidence 87764 5543 334456899999999999998885 5888888899999999999888766533 34444
Q ss_pred HHHHH---HhCCceEEEEec-----CCccCCCCCCCchHHHHHHHHhhcCCC-cEEEe
Q 021527 208 MKAIV---EASEGFVYLVSS-----IGVTGARASISGHVQTLLREIKESSTK-PVAVG 256 (311)
Q Consensus 208 i~~i~---~~a~gfiY~vs~-----~G~TG~~~~~~~~~~~~l~~vk~~~~~-Pv~vG 256 (311)
++.+. +....+|.+.+. .|.+........ +.+..+-+..+. -++..
T Consensus 151 i~~~~~~LeaGA~~ViiEarEsg~~~Gi~~~~g~~r~---~~i~~i~~~l~~~kiifE 205 (251)
T d1qwga_ 151 IKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKE---NELDVLAKNVDINKVIFE 205 (251)
T ss_dssp HHHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCH---HHHHHHHTTSCGGGEEEE
T ss_pred HHHHHHHHHCCCceeEeehhhcCCccceecCCCChhH---HHHHHHHHhCCcccEEEE
Confidence 44332 234445555433 355554434433 456666555443 24444
|
| >d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Escherichia coli [TaxId: 562]
Probab=89.86 E-value=0.53 Score=41.92 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 77 STTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
......+..=.+.|||++.+ |.|| +++|+++++++++|+...- + -
T Consensus 226 ~ea~~e~~~d~~EGAD~lmVKPa~~y---------------------------LDii~~~k~~~~~Pv~aYq----V--S 272 (323)
T d1l6sa_ 226 REAIRESLLDEAQGADCLMVKPAGAY---------------------------LDIVRELRERTELPIGAYQ----V--S 272 (323)
T ss_dssp HHHHHHHHHHHHTTCSBEEEESCTTC---------------------------HHHHHHHHTTCSSCEEEEE----C--H
T ss_pred hHHHHHHHHHHhhccceEEeccchhh---------------------------HHHHHHHHHhcCCCEEEEE----c--c
Confidence 34555555556789999999 6555 6799999999999998841 1 1
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEE
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVL 197 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~ 197 (311)
|.-..++.+.+.|. -| .++ ..|....+++.|-+.|+
T Consensus 273 GEYami~~aa~~g~-----~d--~~~~~~E~l~~~kRAGAd~Ii 309 (323)
T d1l6sa_ 273 GEYAMIKFAALAGA-----ID--EEKVVLESLGSIKRAGADLIF 309 (323)
T ss_dssp HHHHHHHHHHHTTS-----SC--HHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHcCC-----Cc--hHhHHHHHHHHHHhcCCCEEE
Confidence 22334555555541 11 111 44555566777777654
|
| >d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methionine synthase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.70 E-value=2.2 Score=33.50 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=42.4
Q ss_pred HHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCH
Q 021527 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKP 262 (311)
Q Consensus 184 ~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~ 262 (311)
+...++.+|.+++.+-...++++-++.+.+....+|-+-+..+ . .-+.+.+.++.+++. .+.|+++|+|.-+.
T Consensus 26 v~~~l~~~G~~Vi~LG~~~p~e~~~~~~~~~~~d~i~lS~l~~--~----~~~~~~~~~~~l~~~g~~~~vivGG~~~~~ 99 (156)
T d3bula2 26 VGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLIT--P----SLDEMVNVAKEMERQGFTIPLLIGGATTSK 99 (156)
T ss_dssp HHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCST--H----HHHHHHHHHHHHHHTTCCSCEEEESTTCCH
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHhhCCCEEEEecccc--c----chHHHHHHHHHHHhccccceEEEecccccc
Confidence 4445566776655544333333444444444444433322221 1 123455677777775 57899999988776
Q ss_pred HHHHH
Q 021527 263 EHVQQ 267 (311)
Q Consensus 263 e~v~~ 267 (311)
+....
T Consensus 100 ~~~~~ 104 (156)
T d3bula2 100 AHTAV 104 (156)
T ss_dssp HHHHH
T ss_pred hHHHh
Confidence 66544
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=89.32 E-value=1.4 Score=38.36 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc-CCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG-VPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG-~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
..+.+.++.+++.-...+-.=+=.|+ |.+.+.++++.++++|++.|-+= =.-.. -+.|| .++
T Consensus 108 ~~~~~iv~~~~~~~~~pvsvK~RlG~-d~~~~~~~~~~l~~~G~~~itvH~Rt~~q-~~~~~-------------a~~-- 170 (305)
T d1vhna_ 108 RHFRYIVRELRKSVSGKFSVKTRLGW-EKNEVEEIYRILVEEGVDEVFIHTRTVVQ-SFTGR-------------AEW-- 170 (305)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEESCS-SSCCHHHHHHHHHHTTCCEEEEESSCTTT-TTSSC-------------CCG--
T ss_pred HHHHHHhhhhhhhcccccccccccCc-ccchhhHHHHHHHHhCCcEEEechhhhhh-ccccc-------------hhh--
Confidence 35677777776555555666667777 45667899999999999999992 10000 01111 122
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
+.++++++ ++|+++.|-.. ..++..+.+...|+|||.+.
T Consensus 171 --~~i~~~~~--~ipvi~NGdI~-----s~~d~~~~l~~tg~dgVMiG 209 (305)
T d1vhna_ 171 --KALSVLEK--RIPTFVSGDIF-----TPEDAKRALEESGCDGLLVA 209 (305)
T ss_dssp --GGGGGSCC--SSCEEEESSCC-----SHHHHHHHHHHHCCSEEEES
T ss_pred --hHHHhhhh--hhhhhcccccc-----cHHHHHHHHHhcCCCeEehh
Confidence 35566665 69999866432 34666666677899999996
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=89.21 E-value=3.4 Score=31.60 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=12.9
Q ss_pred HHHHHHcCCcEEEecCCChhhHHH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETES 183 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~ 183 (311)
.+.+++.|+|++.-|+-|+++..+
T Consensus 105 ~~~l~~~Gv~~if~~~t~~~~~~~ 128 (137)
T d1ccwa_ 105 EKRFKDMGYDRVYAPGTPPEVGIA 128 (137)
T ss_dssp HHHHHHTTCSEECCTTCCHHHHHH
T ss_pred HHHHHHcCCCEEECCCCCHHHHHH
Confidence 344555666665555655555433
|
| >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=89.14 E-value=1.8 Score=33.49 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=35.0
Q ss_pred HHHHHHHhhc---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 239 QTLLREIKES---STKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 239 ~~~l~~vk~~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.++++++|+. .++||++=.+-++.++..+.++.|||..+.
T Consensus 71 ~el~~~ir~~~~~~~iPiI~lt~~~~~~~~~~a~~~Ga~d~l~ 113 (153)
T d1w25a2 71 LRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILS 113 (153)
T ss_dssp HHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHhccccccceeEEeecCCCHHHHHHHHhcCcceEEE
Confidence 5788999875 379999999999999999999999999975
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=89.09 E-value=0.43 Score=41.52 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=52.5
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC---------C------HHHHHH
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT---------N------FNAILS 129 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~---------~------~~~~~~ 129 (311)
+-+.+.++.|- +...++...+.+.|.+.|.|--|.+. -.-|+.....+ .|+ | .+++.+
T Consensus 120 vdGliipDLP~-ee~~~~~~~~~~~gl~~I~lvsPtT~----~eRi~~i~~~s--~GFIY~Vs~~GvTG~~~~~~~~~~~ 192 (271)
T d1ujpa_ 120 ATGVILPDLPP-DEDPGLVRLAQEIGLETVFLLAPTST----DARIATVVRHA--TGFVYAVSVTGVTGMRERLPEEVKD 192 (271)
T ss_dssp CCEEECTTCCG-GGCHHHHHHHHHHTCEEECEECTTCC----HHHHHHHHTTC--CSCEEEECC------------CCHH
T ss_pred ceeEeccchhh-hhHHHHHHHhhccccceeeccCCCcc----hHHHHHHHHhC--cchhhhhcccCccCccccchHHHHH
Confidence 33445666663 33445666667777777777666543 22333332221 221 1 134567
Q ss_pred HHHHhhccCCCcEEEE-ecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 130 MLKEVVPQMSCPIALF-TYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm-~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
.++++|+.+++|+++- |-- ..+ -++.+ .++||+|+.
T Consensus 193 ~i~~ik~~t~~Pv~vGFGIs------~~e-~v~~~--~~ADGvIVG 229 (271)
T d1ujpa_ 193 LVRRIKARTALPVAVGFGVS------GKA-TAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHTTCCSCEEEESCCC------SHH-HHHHH--TTSSEEEEC
T ss_pred HHHhhhccccCCeEEeCCCC------CHH-HHHHh--CCCCEEEEc
Confidence 8888898899997763 211 123 34443 489999998
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=88.99 E-value=4.3 Score=33.06 Aligned_cols=168 Identities=14% Similarity=0.132 Sum_probs=89.4
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCc
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCP 141 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iP 141 (311)
.+=+|.|.|-.+.+...+.++.+.+.|.+.+-+-+...| +++-++.++++|+.+ ++.
T Consensus 4 ~v~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~~---------------------~~~d~~~i~~ir~~~g~~~~ 62 (234)
T d1jpma1 4 TLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDD---------------------IATDIARIQEIRKRVGSAVK 62 (234)
T ss_dssp EEEBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSSC---------------------HHHHHHHHHHHHHHHGGGSE
T ss_pred cceEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCCC---------------------HHHHHHHHHHHHHHcCchhh
Confidence 344566778778899999999999999999988543322 223345666676543 344
Q ss_pred EEEEecCcchhccC-HHHHHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 142 IALFTYYNPILKRG-VDNFMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 142 iilm~Y~n~i~~~g-~~~fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+.+. .|.-+... ..+|++.+.+.+.+-..+-+ ++.+....+.+..+..++....-=+-.+..+.. .+.+. ....
T Consensus 63 i~vD--~N~~~~~~~a~~~~~~le~~~~~i~~~EeP~~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~-~~i~~-~~~d 138 (234)
T d1jpma1 63 LRLD--ANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAF-EVLQT-RSAD 138 (234)
T ss_dssp EEEE--CTTCSCHHHHHHHHHHHHHTTCCEEEEECCSCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHH-HHHHT-TCCS
T ss_pred hhhh--cccccchHHHHHHHHHHHhccCceeeecCCccccCHHHHHHhhccccceeecccccccchhhh-hhhcc-CCcC
Confidence 5544 34333211 13455666666666545533 333456666666677777654433334444433 33332 2233
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCC
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISK 261 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst 261 (311)
++..-....|. +. ... .+.++.+..+++++++....+
T Consensus 139 ~v~~d~~~~GG---it-~~~-~i~~~a~~~g~~~~~~~~~~~ 175 (234)
T d1jpma1 139 LINIKLMKAGG---IS-GAE-KINAMAEACGVECMVGSMIET 175 (234)
T ss_dssp EEEECHHHHTS---HH-HHH-HHHHHHHHTTCCEEECCSSCC
T ss_pred eEEEeeecCCC---HH-HHH-HHHHHHHhcCeeEeecccccC
Confidence 33221112221 11 112 233444456789888654443
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=88.84 E-value=2.8 Score=31.90 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=34.9
Q ss_pred HHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 239 QTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 239 ~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.++++++|+.. ++||++=.+-.+.++..+..+.|||+.++
T Consensus 72 ~el~~~ir~~~~~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~ 114 (144)
T d1i3ca_ 72 REVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT 114 (144)
T ss_dssp HHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHhCcccCCCeEEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 57888888753 68999988999999999999999999976
|
| >d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Plasmodium vivax [TaxId: 5855]
Probab=88.81 E-value=1.7 Score=38.45 Aligned_cols=194 Identities=13% Similarity=0.176 Sum_probs=97.0
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
+.++++++.+. |-++=.|+.|=. +.|+. | ++.+-++++.+++ .++||++..-..+|-.+ ...
T Consensus 99 ~~~iIdat~~~-v~~~Kp~~affe--~~G~~-----------G--~~~L~~ii~~l~~-~g~~VflD~K~~DIgnT-v~~ 160 (332)
T d2ffca1 99 CFYIINETKEY-ALAYKMNFAFYL--PYGSL-----------G--VDVLKNVFDYLHH-LNVPTILDIKMNDIGNT-VKH 160 (332)
T ss_dssp HHHHHHHHGGG-CSEEEEEGGGGS--TTTHH-----------H--HHHHHHHHHHHHH-HTCCEEEEEEECCCHHH-HHH
T ss_pred HHHHHHHhhhh-hhhhcccHHHHH--HhhHH-----------H--HHHHHHHHHHhcc-cccceeehhhhccHHHH-HHH
Confidence 34455555444 667777877732 23432 0 1112234444443 57899998766555322 245
Q ss_pred HHHHHHH-cCCcEEEecCCCh-hhHHHHHHHHHHcCCCeEEEeCCCChH---------------------HHHHHHHHhC
Q 021527 159 FMSTVRD-IGIRGLVVPDVPL-EETESLQKEAMKNKIELVLFTTPTTPT---------------------DRMKAIVEAS 215 (311)
Q Consensus 159 fi~~~~~-aGadGviipDlp~-ee~~~~~~~~~~~gi~~I~lisp~t~~---------------------eri~~i~~~a 215 (311)
+++.+.+ .++|.+.+.-..- +-...+.....+.+...+++..-++.. +...+..+..
T Consensus 161 ya~a~~~~~~~DavTVhp~~G~d~l~p~~~~~~~~~~kgv~vL~~tSn~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (332)
T d2ffca1 161 YRKFIFDYLRSDSCTANIYMGTQMLRDICLDEECKRYYSTFVLVKTTNADSHIFQNRLSLDGKEAYVVIAEEVQKMAKQL 240 (332)
T ss_dssp HHHHHHTTSCCSEEEECCTTCSTTHHHHHBCTTSCCBCEEEEEEECSSTTTHHHHTTCEETTEEHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCEEEecccchHHHHHHHHHHHHhcccccceeecccCcchHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 6666655 7999999974332 333334333333333334332211110 1111111111
Q ss_pred -----CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE-eeCCCCHHHHHHHH------HcCCcEEEEhhHh
Q 021527 216 -----EGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV-GFGISKPEHVQQVA------GWGADGVIVGSAM 282 (311)
Q Consensus 216 -----~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v-GfGIst~e~v~~v~------~~GADGvIVGSai 282 (311)
.+.+=+| .|.| . .+.++.+|+.. +.|+++ |+|-.. .+.+++. +.|+|-++||-.|
T Consensus 241 ~~a~~~~~~G~V--~gat------~---p~e~~~iR~~~~~~~iL~PGIGaQg-gDq~rv~t~~~a~~~ga~~IvvGR~I 308 (332)
T d2ffca1 241 HLEENGEFVGFV--VGAN------C---YDEIKKIRELFPDCYILAPGVGAQK-GDLRKMLCNGYSKNYEKVLINVGRAI 308 (332)
T ss_dssp TTGGGTCCEEEE--ECTT------C---HHHHHHHHHHCTTCCEEECCBSTTC-BCHHHHHHHHCCSSGGGEEEEECHHH
T ss_pred Hhhhccccccee--Eeec------h---hHHHHHHHHhCCCCeEEeCCcCcCC-CCHHHHhCHHhHhhcCceEEEeCccc
Confidence 1111111 1222 1 14578888765 678766 666543 3444433 4578999999999
Q ss_pred hchhhhcCCchhHHHHHHHHHHHHHhh
Q 021527 283 VKLLGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 283 v~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
.+. .++ .+.++++.++++++
T Consensus 309 ~~A----~dp---~~aa~~i~~ei~e~ 328 (332)
T d2ffca1 309 TKS----GSP---QQAAREYHQQIKEV 328 (332)
T ss_dssp HTS----SCH---HHHHHHHHHHHHHH
T ss_pred cCC----CCH---HHHHHHHHHHHHHH
Confidence 873 233 34555666666554
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=88.79 E-value=2.7 Score=31.69 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=50.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc---cCCCcEEEEecCcchhccCH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP---QMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~---~~~iPiilm~Y~n~i~~~g~ 156 (311)
.+.+..+.+...|.|-+++-. |..|| ++.++.+|. ..++||++++-++ -
T Consensus 35 ~eal~~~~~~~~dlil~D~~~--p~~~G--------------------~~~~~~ir~~~~~~~~piI~lt~~~------~ 86 (139)
T d1w25a1 35 PTALAMAARDLPDIILLDVMM--PGMDG--------------------FTVCRKLKDDPTTRHIPVVLITALD------G 86 (139)
T ss_dssp HHHHHHHHHHCCSEEEEESCC--SSSCH--------------------HHHHHHHHHSTTTTTSCEEEEECSS------C
T ss_pred hhhhhhhhcccceeeeeeccc--cCCCc--------------------hHHHHHhhhcccccCCCEEEEEcCC------C
Confidence 567777778889999998644 65677 234444543 3579999998544 2
Q ss_pred HHHHHHHHHcCCcEEEecCCChhh
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEE 180 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee 180 (311)
......+.++|++.++.=-+..++
T Consensus 87 ~~~~~~a~~~Ga~dyl~KP~~~~~ 110 (139)
T d1w25a1 87 RGDRIQGLESGASDFLTKPIDDVM 110 (139)
T ss_dssp HHHHHHHHHHTCCEEEESSCCHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCHHH
Confidence 345567889999999886444444
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=88.73 E-value=3.3 Score=34.74 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+..+..++.|....+.....+.-+.+.+.+.++.+.+.|+|.|-+. |- -| ..+.+++.
T Consensus 120 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~----DT--~G-------------~~~P~~v~ 180 (289)
T d1nvma2 120 VSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMA----DS--GG-------------AMSMNDIR 180 (289)
T ss_dssp GGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEE----CT--TC-------------CCCHHHHH
T ss_pred hHhHHHHHHHHhCCceeeEeeeccccCchhhhHHHHhhccccceeeeec----ch--hh-------------cccchhHH
Confidence 3555566666666665555556677777889999999999999999885 21 12 24667778
Q ss_pred HHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe
Q 021527 129 SMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV 173 (311)
Q Consensus 129 ~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii 173 (311)
++++.+++++ ++|+.+-+.-| ...++.+.+ .+.++|++-+=.
T Consensus 181 ~~v~~l~~~~~~~~~i~~H~Hn~--~g~a~an~l-~A~~~G~~~id~ 224 (289)
T d1nvma2 181 DRMRAFKAVLKPETQVGMHAHHN--LSLGVANSI-VAVEEGCDRVDA 224 (289)
T ss_dssp HHHHHHHHHSCTTSEEEEECBCT--TSCHHHHHH-HHHHTTCCEEEE
T ss_pred HHHHHHHHHhcccccceeeechH--HHHHHHHHH-HHHHhCCcEeec
Confidence 8888888764 57888876533 123344444 467899997533
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.68 E-value=0.3 Score=41.90 Aligned_cols=71 Identities=13% Similarity=0.197 Sum_probs=47.6
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.-.++.|++.|+..+. |.-+|+-.| .|..-. ..++.++++.++|+++..- .|.-..
T Consensus 138 ~v~ak~le~~Gc~~vM---plgsPIGsg------------~Gi~n~---~~l~~i~~~~~vpvivdAG------Ig~psd 193 (243)
T d1wv2a_ 138 PIIARQLAEIGCIAVM---PLAGLIGSG------------LGICNP---YNLRIILEEAKVPVLVDAG------VGTASD 193 (243)
T ss_dssp HHHHHHHHHSCCSEEE---ECSSSTTCC------------CCCSCH---HHHHHHHHHCSSCBEEESC------CCSHHH
T ss_pred HHHHhHHHHcCceeee---ecccccccc------------cccccH---HHHHhccccCCcceEeecc------cCCHHH
Confidence 3566777777777664 445565554 333222 2455566678999999752 355677
Q ss_pred HHHHHHcCCcEEEec
Q 021527 160 MSTVRDIGIRGLVVP 174 (311)
Q Consensus 160 i~~~~~aGadGviip 174 (311)
+..+-+.|+|||++.
T Consensus 194 aa~AMElG~dgVLvn 208 (243)
T d1wv2a_ 194 AAIAMELGCEAVLMN 208 (243)
T ss_dssp HHHHHHHTCSEEEES
T ss_pred HHHHHHccCCEEEec
Confidence 888999999999985
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=88.59 E-value=2.4 Score=34.38 Aligned_cols=127 Identities=19% Similarity=0.238 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccC
Q 021527 156 VDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG 229 (311)
.-+.++.+.++|++-|.+ .+++.+| +.++++.|+++|...++ +.. .+...++ .++|+ .+ |
T Consensus 19 ~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~lii--nd~--~~lA~~~--~adGv-Hl----~--- 84 (206)
T d1xi3a_ 19 EVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFV--DDR--VDVALAV--DADGV-QL----G--- 84 (206)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEE--ESC--HHHHHHH--TCSEE-EE----C---
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEe--chh--HHHHHhc--cCceE-ee----c---
Confidence 346788899999998866 5777655 44578888898865543 322 2332222 23443 33 1
Q ss_pred CCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHH
Q 021527 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
.. ..+ . . ..+. .....++|...++.+++.+....|+|-+.+|..+...-... .+.-+++.++++++.
T Consensus 85 ~~-~~~--~-~---~~~~-~~~~~iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~-~~~~g~~~l~~~~~~ 151 (206)
T d1xi3a_ 85 PE-DMP--I-E---VAKE-IAPNLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKED-ARVIGLEGLRKIVES 151 (206)
T ss_dssp TT-SCC--H-H---HHHH-HCTTSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC----C-CCCCHHHHHHHHHHH
T ss_pred cc-ccc--H-h---hhhh-cccccccccccCCHHHHHHHHhcCCCEEEeccccccccccc-cccccHHHHHHHHHh
Confidence 11 112 1 1 1122 12235688899999999999999999999998876433221 122356666666543
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=88.42 E-value=1.9 Score=31.75 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=51.9
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc---CCCcEEEEecCcchhccCH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ---MSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~---~~iPiilm~Y~n~i~~~g~ 156 (311)
.+.++.+.+.-.|.+-++.-. |-.|| ++.++++|+. .++|+++++-++ -
T Consensus 34 ~~al~~l~~~~~dlil~D~~m--p~~~G--------------------~~l~~~lr~~~~~~~~pvi~lt~~~------~ 85 (121)
T d1zesa1 34 DSAVNQLNEPWPDLILLDWML--PGGSG--------------------IQFIKHLKRESMTRDIPVVMLTARG------E 85 (121)
T ss_dssp HHHHHHSSSSCCSEEEECSSC--TTSCH--------------------HHHHHHHHHSTTTTTSCEEEEESCC------S
T ss_pred HHHHHHHHccCCCEEEeecCC--CCCCH--------------------HHHHHHHHhCccCCCCeEEEEECCC------C
Confidence 566777777889999987544 55677 4566777643 469999988543 2
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhH
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~ 181 (311)
......+.+.|+++++.=-+..++.
T Consensus 86 ~~~~~~~~~~G~~d~l~KP~~~~~L 110 (121)
T d1zesa1 86 EEDRVRGLETGADDYITKPFSPKEL 110 (121)
T ss_dssp HHHHHHHHHHTCSEEEESSCCHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHH
Confidence 3456678899999998854554553
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=88.31 E-value=0.66 Score=34.66 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=50.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.-.|.+-++. .-|-.|| ++.++++|++ .++|+++++-+. -..
T Consensus 37 ~~a~~~l~~~~~dlii~D~--~mp~~~G--------------------~el~~~l~~~~~~~piI~~t~~~------~~~ 88 (123)
T d1krwa_ 37 NEVLAALASKTPDVLLSDI--RMPGMDG--------------------LALLKQIKQRHPMLPVIIMTAHS------DLD 88 (123)
T ss_dssp HHHHHHHTTCCCSEEEECC--SSSSSTT--------------------HHHHHHHHHHSSSCCEEESCCCS------CHH
T ss_pred HHHHHHHHhCCCCEEEehh--hcCCchH--------------------HHHHHHHHHhCCCCeEEEEecCC------CHH
Confidence 5677777788899999983 4466777 4466666543 679999987433 245
Q ss_pred HHHHHHHcCCcEEEecCCChhh
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEE 180 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee 180 (311)
....+.+.|+++++.=-+..+|
T Consensus 89 ~~~~a~~~Ga~dyl~KP~~~~e 110 (123)
T d1krwa_ 89 AAVSAYQQGAFDYLPKPFDIDE 110 (123)
T ss_dssp HHHHHHHHTEEEECSSCCHHHH
T ss_pred HHHHHHHcCCCeEEeCcCCHHH
Confidence 6677889999998765343344
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=88.24 E-value=1.6 Score=32.57 Aligned_cols=74 Identities=15% Similarity=0.317 Sum_probs=52.8
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc---CCCcEEEEecCcchhccCH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ---MSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~---~~iPiilm~Y~n~i~~~g~ 156 (311)
.+.++.+.+.-.|.|-+++-. |-.|| ++.++++|+. .++|+++++.. +-
T Consensus 41 ~~al~~l~~~~~dlii~D~~m--P~~~G--------------------~el~~~lr~~~~~~~~pii~lt~~------~~ 92 (129)
T d1p6qa_ 41 EQGMKIMAQNPHHLVISDFNM--PKMDG--------------------LGLLQAVRANPATKKAAFIILTAQ------GD 92 (129)
T ss_dssp HHHHHHHHTSCCSEEEECSSS--CSSCH--------------------HHHHHHHTTCTTSTTCEEEECCSC------CC
T ss_pred HHHHHHHHhCCCCeEEeeeec--CCCCh--------------------HHHHHHHHhCcccCCCeEEEEEec------CC
Confidence 566777777889999997554 55677 5677788753 46898887643 23
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhH
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~ 181 (311)
+.....+.++|+++++.=-+..++.
T Consensus 93 ~~~~~~a~~~G~~~~l~KP~~~~~L 117 (129)
T d1p6qa_ 93 RALVQKAAALGANNVLAKPFTIEKM 117 (129)
T ss_dssp HHHHHHHHHHTCSCEECCCSSHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHH
Confidence 5677788999999988754544543
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.20 E-value=1.4 Score=36.07 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcc-----hh
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP-----IL 152 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~-----i~ 152 (311)
+....++.+.+.|+|++-+= +++.-..++.+. +..++.+..+.+++..+. ..
T Consensus 69 t~~~~~~~~~~~gad~~TVh-----~~~g~~~i~~~~------------------~~a~~~~~~~~~l~~~s~~~~~~~~ 125 (212)
T d1km4a_ 69 TNEKICRATFKAGADAIIVH-----GFPGADSVRACL------------------NVAEEMGREVFLLTEMSHPGAEMFI 125 (212)
T ss_dssp HHHHHHHHHHHTTCSEEEEE-----STTCHHHHHHHH------------------HHHHHHTCEEEEECSCSSGGGGTTH
T ss_pred HHHHhHhhhccccccEEEEe-----ccCChHHHHHHH------------------HHHHhcCCccccchhhcchhhhhhh
Confidence 34566778888999999883 222222333221 222222233444443321 11
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHH
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAM 189 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~ 189 (311)
....++..+.+.++|.+|++.+...+++...+++.+.
T Consensus 126 ~~~~~~~~~~~~~~g~~g~v~~~~~~~~i~~ir~~~~ 162 (212)
T d1km4a_ 126 QGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIG 162 (212)
T ss_dssp HHHHHHHHHHHHHHTCCEEECCTTCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhCCccccccccCHHHHhhhhhccC
Confidence 1223445556678899998888777777777766553
|
| >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=87.98 E-value=3.1 Score=32.02 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=50.2
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc---CCCcEEEEecCcchhccCHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ---MSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~---~~iPiilm~Y~n~i~~~g~~ 157 (311)
+.+..+.+.-.|.|-+++-. |-.|| +++++++|+. .++||++++-++ -.
T Consensus 46 ~~~~~~~~~~~DlillD~~m--P~~dG--------------------~el~~~ir~~~~~~~iPiI~lt~~~------~~ 97 (153)
T d1w25a2 46 EKAKISAGGPVDLVIVNAAA--KNFDG--------------------LRFTAALRSEERTRQLPVLAMVDPD------DR 97 (153)
T ss_dssp HHHHHHHHSSCSEEEEETTC--SSSCH--------------------HHHHHHHHTSGGGTTCCEEEEECTT------CH
T ss_pred HHHHHHhcCCCCEEEEECcc--ccccc--------------------hHHHHHHHhccccccceeEEeecCC------CH
Confidence 34455667789999998655 66788 5577777643 579999987543 23
Q ss_pred HHHHHHHHcCCcEEEecCCChhh
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEE 180 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee 180 (311)
.....+.++|+++++.=-+..++
T Consensus 98 ~~~~~a~~~Ga~d~l~KP~~~~~ 120 (153)
T d1w25a2 98 GRMVKALEIGVNDILSRPIDPQE 120 (153)
T ss_dssp HHHHHHHHTTCCEEEESSCCHHH
T ss_pred HHHHHHHhcCcceEEECCCCHHH
Confidence 45567889999999986454454
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=87.78 E-value=1.1 Score=40.72 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCC-----------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcE
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLA-----------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPI 142 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~a-----------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPi 142 (311)
.+...++++...+.|+|.+-+.+....... .|+.+...+ +++++++++.+ ++||
T Consensus 279 ~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~a-------------l~~v~~v~~~~~~~ipI 345 (409)
T d1tv5a1 279 QEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDIS-------------TKFICEMYNYTNKQIPI 345 (409)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHH-------------HHHHHHHHHHTTTCSCE
T ss_pred chhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHH-------------HHHHHHHHHHcCCCceE
Confidence 356899999999999999999887755321 244544333 45788888765 4898
Q ss_pred EEEecCcchhccCH--HHHHHHHHHcCCcEEEe--------cCCChhhHHHHHHHHHHcCCCe
Q 021527 143 ALFTYYNPILKRGV--DNFMSTVRDIGIRGLVV--------PDVPLEETESLQKEAMKNKIEL 195 (311)
Q Consensus 143 ilm~Y~n~i~~~g~--~~fi~~~~~aGadGvii--------pDlp~ee~~~~~~~~~~~gi~~ 195 (311)
+-.| |+ .+.+-+...+||+.|=+ |++.-+=..++.+.++++|++.
T Consensus 346 IGvG--------GI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~~g~~~ 400 (409)
T d1tv5a1 346 IASG--------GIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYN 400 (409)
T ss_dssp EEES--------SCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHTCSS
T ss_pred EEEC--------CCCCHHHHHHHHHcCCCHHhhhhHHHhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 8765 33 23344456689999876 4443233566888888888763
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=87.75 E-value=1.5 Score=39.06 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+++.++++.|++.|+|.+++-.+- +..++ +... .+.+++|+.+++|++.-+-++
T Consensus 249 ~~e~~~~~~~l~~~gvd~i~vs~~~---~~~~~------------~~~~----~~~~~~~~~~~~~vi~~G~~t------ 303 (363)
T d1vyra_ 249 EADALYLIEELAKRGIAYLHMSETD---LAGGK------------PYSE----AFRQKVRERFHGVIIGAGAYT------ 303 (363)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCB---TTBCC------------CCCH----HHHHHHHHHCCSEEEEESSCC------
T ss_pred hHHHHHHHHHHHhcCCeeeecccCC---ccCCc------------cccH----HHHHHHHHhcCceEEecCCCC------
Confidence 4688899999999999999994321 11111 1121 245567777888988866433
Q ss_pred HHHHHHHHHHcC-CcEEEe
Q 021527 156 VDNFMSTVRDIG-IRGLVV 173 (311)
Q Consensus 156 ~~~fi~~~~~aG-adGvii 173 (311)
.+.++.+.+.| +|.|-+
T Consensus 304 -~~~ae~~l~~G~~DlV~~ 321 (363)
T d1vyra_ 304 -AEKAEDLIGKGLIDAVAF 321 (363)
T ss_dssp -HHHHHHHHHTTSCSEEEE
T ss_pred -HHHHHHHHHCCCcceehh
Confidence 34567777767 788877
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=87.74 E-value=5.7 Score=32.66 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=84.3
Q ss_pred ccEEEEEeCCC----CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC
Q 021527 63 VALIPYITAGD----PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM 138 (311)
Q Consensus 63 ~~li~yi~~G~----P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~ 138 (311)
.-+-+|-+.|+ .+.+.+.+.++.+.+.|.+.+=+-+.. .++++-++.++.+|+.+
T Consensus 4 ~kv~vYas~g~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~---------------------~~~~~di~~v~~vr~~~ 62 (247)
T d1tzza1 4 PRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGG---------------------APIEEDRMRIEAVLEEI 62 (247)
T ss_dssp CEEEEEEECCCC----CHHHHHHHHHHHHTTTCSEEEEECSS---------------------SCHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCcCCCCcCHHHHHHHHHHHHHcCCCEEEEECCC---------------------CCHHHHHHHHHHHHHhc
Confidence 34567887774 356888899999999999999884321 23344456777777643
Q ss_pred CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 139 SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
.--+-+|.-.|.-+ ..+++.++.+.+.++++..+= .|
T Consensus 63 g~~~~l~vDan~~~------------------------~~~~Ai~~~~~l~~~~i~wiE--eP----------------- 99 (247)
T d1tzza1 63 GKDAQLAVDANGRF------------------------NLETGIAYAKMLRDYPLFWYE--EV----------------- 99 (247)
T ss_dssp TTTCEEEEECTTCC------------------------CHHHHHHHHHHHTTSCCSEEE--CC-----------------
T ss_pred cCCceEEecccccc------------------------cchhHHHHHhhcchhhhhhhc--cc-----------------
Confidence 22223333333111 124455555555555543221 11
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCC-----cEEEEh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGA-----DGVIVG 279 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GA-----DGvIVG 279 (311)
++++..+-++++|+.+++||++|=.+.++++..++++.|| |.+.+.
T Consensus 100 ---------------~~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d 150 (247)
T d1tzza1 100 ---------------GDPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFD 150 (247)
T ss_dssp ---------------SCTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred ---------------cccccchhhhhhhhccccccccchhhhhhHHHHHHHHccCCcCcceeEeec
Confidence 1111224577888888899999999989999999988876 666653
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.70 E-value=1.5 Score=36.50 Aligned_cols=95 Identities=15% Similarity=0.037 Sum_probs=65.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.++..+.++.|++.+..++|==++..| ++..+++++++++||.+.-.. +
T Consensus 86 ~~~~A~~~~~~l~~~~l~~iEeP~~~~d-------------------------~~~~~~l~~~~~~pI~~~E~~-----~ 135 (255)
T d1rvka1 86 SRTDALALGRGLEKLGFDWIEEPMDEQS-------------------------LSSYKWLSDNLDIPVVGPESA-----A 135 (255)
T ss_dssp CHHHHHHHHHHHHTTTCSEEECCSCTTC-------------------------HHHHHHHHHHCSSCEEECSSC-----S
T ss_pred ccchhhhhhhhcccchhhhhcCCccccc-------------------------HHHHHHHHHhcccceeehhhc-----c
Confidence 3567888889999888888884212211 235678888899998764322 2
Q ss_pred CHHHHHHHHHHcCCcEEEecCCC----hhhHHHHHHHHHHcCCCeEEEe
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVP----LEETESLQKEAMKNKIELVLFT 199 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp----~ee~~~~~~~~~~~gi~~I~li 199 (311)
+...|.+.+.+.|+-.++.+|+. +.+..++...+..+|+...+-.
T Consensus 136 ~~~~~~~~~i~~~~~dii~~d~~~~GGit~~~~i~~~a~~~gi~v~~h~ 184 (255)
T d1rvka1 136 GKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECEVHG 184 (255)
T ss_dssp SHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECC
T ss_pred cchhhhhhhhhhchhhhccccccccccchHHHHHHHHHHHhccceeccc
Confidence 33456666666666556788854 4678889999999999866543
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.51 E-value=0.91 Score=36.49 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=38.5
Q ss_pred CchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 235 SGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
++++.+.++.+++.. .+.+.+.+||+ ++++.++...|+|.+.+|+-..
T Consensus 110 p~~~k~~v~~~~~~~~~i~lEaSGgI~-~~ni~~ya~~GvD~IS~galt~ 158 (169)
T d1qpoa1 110 VWQTQTAVQRRDSRAPTVMLESSGGLS-LQTAATYAETGVDYLAVGALTH 158 (169)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEESSCC-TTTHHHHHHTTCSEEECGGGTS
T ss_pred hHhHHHHHHHhhccCCeeEEEEeCCCC-HHHHHHHHHcCCCEEECCcccc
Confidence 445777788777654 46688899996 7999999999999999996554
|
| >d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Staphylococcus aureus [TaxId: 1280]
Probab=87.50 E-value=6.8 Score=32.46 Aligned_cols=179 Identities=15% Similarity=0.177 Sum_probs=91.4
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIA 143 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPii 143 (311)
+++=+++.+-..+...+.++... .|+|++|+=+ |.+.+ .+.+++.+.+.++|+. .++|++
T Consensus 4 ~~~~~~~~~~~e~~~~~~~~~~~-~~~D~vElRl---D~l~~---------------~~~~~v~~~~~~l~~~~~~~PiI 64 (236)
T d1sfla_ 4 VVATITPQLSIEETLIQKINHRI-DAIDVLELRI---DQFEN---------------VTVDQVAEMITKLKVMQDSFKLL 64 (236)
T ss_dssp EEEEECCCC---CHHHHHHHHTT-TTCSEEEEEC---TTSTT---------------CCHHHHHHHHHHHC---CCSEEE
T ss_pred EEEecCCchhHHHHHHHHHHhcC-cCCCEEEEEe---ccccC---------------CCHHHHHHHHHHHHhcCCCCcEE
Confidence 45556666533455667777655 4799999964 22221 3445566788888765 468977
Q ss_pred EEecCc----chhccCHHHHHHHHHH----cCCcEEEe-cCCC--hhhHHHHHHHHHHcCCCeEEEeC--CCCh-HHHHH
Q 021527 144 LFTYYN----PILKRGVDNFMSTVRD----IGIRGLVV-PDVP--LEETESLQKEAMKNKIELVLFTT--PTTP-TDRMK 209 (311)
Q Consensus 144 lm~Y~n----~i~~~g~~~fi~~~~~----aGadGvii-pDlp--~ee~~~~~~~~~~~gi~~I~lis--p~t~-~eri~ 209 (311)
+- |-. ..+....++.++.+.+ .|+|-+=+ -+.+ .+....+...++..|.++|.-.. ..|| .+.+.
T Consensus 65 ~T-~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~~~~vI~S~H~f~~TP~~~el~ 143 (236)
T d1sfla_ 65 VT-YRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQ 143 (236)
T ss_dssp EE-CCBGGGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHH
T ss_pred EE-EeCHHHCCCCCCCHHHHHHHHHHHHHhcCCchhhhhhcchhhHHHHHHHHHHhhcCCCEEEEEEcCCCCCCCHHHHH
Confidence 74 321 1233333444544433 24665422 1112 23445667788888987664221 1222 23332
Q ss_pred HHHH-h-CCc-eEEEEecCCccCCCCCCCchHH---HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH
Q 021527 210 AIVE-A-SEG-FVYLVSSIGVTGARASISGHVQ---TLLREIKESSTKPVAVGFGISKPEHVQQVAG 270 (311)
Q Consensus 210 ~i~~-~-a~g-fiY~vs~~G~TG~~~~~~~~~~---~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~ 270 (311)
.+.+ . ..| .+|-+..+..+ ..++. +...++++..+.|++ +++....-.+.+++.
T Consensus 144 ~~~~~~~~~gaDivKia~~~~~------~~D~~~ll~~~~~~~~~~~~pii-~~~MG~~G~~sRi~~ 203 (236)
T d1sfla_ 144 FIFFKMQKFNPEYVKLAVMPHN------KNDVLNLLQAMSTFSDTMDCKVV-GISMSKLGLISRTAQ 203 (236)
T ss_dssp HHHHHHHTTCCSEEEEEECCSS------HHHHHHHHHHHHHHHHHCSSEEE-EEECTGGGHHHHHTG
T ss_pred HHHHHHHHhCCCeEEEEEecCC------HHHHHHHHHHHHHHhhccCCCEE-EEecCCcchHHHHHH
Confidence 3222 1 334 45556543221 22333 344455666678974 466654456777764
|
| >d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Prosthecochloris vibrioformis [TaxId: 1098]
Probab=87.35 E-value=0.48 Score=42.15 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=47.0
Q ss_pred HHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 79 TAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
....+..=.+.|||++.+ |.|| +++|+++++++++|+...- + -|.
T Consensus 226 A~~e~~~D~~EGAD~lMVKPa~~y---------------------------LDii~~~k~~~~~Pv~aYq----V--SGE 272 (319)
T d2c1ha1 226 AMKEVELDIVEGADIVMVKPGLAY---------------------------LDIVWRTKERFDVPVAIYH----V--SGE 272 (319)
T ss_dssp HHHHHHHHHHHTCSEEEEESCGGG---------------------------HHHHHHHHHHHCSCEEEEE----C--HHH
T ss_pred HHHHHHHHHhcCCCeEEecchhHH---------------------------HHHHHHHHhccCCCEEEEE----c--chH
Confidence 444444456678999999 4444 6799999999999988741 1 122
Q ss_pred HHHHHHHHHcCCcEEEecCCChh-hHHHHHHHHHHcCCCeEE
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLE-ETESLQKEAMKNKIELVL 197 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~e-e~~~~~~~~~~~gi~~I~ 197 (311)
-..++.+.+.|. -| .+ -..|....+++.|-+.|+
T Consensus 273 Yamik~a~~~g~-----~d--~~~~~~Esl~~~kRAGAd~Ii 307 (319)
T d2c1ha1 273 YAMVKAAAAKGW-----ID--EDRVMMESLLCMKRAGADIIF 307 (319)
T ss_dssp HHHHHHHHHHTS-----SC--HHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHCCC-----Cc--HHHHHHHHHHHHHHcCCCEEE
Confidence 344555555551 11 11 133444555666766554
|
| >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=86.84 E-value=5.9 Score=33.90 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCcEEEec----------C----------------------CChhhHHHHHHHHHHcCCCeEEEeCCCCh
Q 021527 157 DNFMSTVRDIGIRGLVVP----------D----------------------VPLEETESLQKEAMKNKIELVLFTTPTTP 204 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip----------D----------------------lp~ee~~~~~~~~~~~gi~~I~lisp~t~ 204 (311)
.+.++.++++|||+|=+- | |+.++..++.+.|++.|++ ++++|-.
T Consensus 34 k~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~els~~~~~~l~~~~k~~gi~--~~~s~fd- 110 (295)
T d1vlia2 34 FALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVI--FLSTVCD- 110 (295)
T ss_dssp HHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCE--EECBCCS-
T ss_pred HHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchheecCHHHhhhHHHHhhhcccc--eeeeccc-
Confidence 457788899999987662 1 4556778899999999864 4567765
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG 270 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~ 270 (311)
.+.+..+.+....+ |-+++. .+. -.++|+++.+ ++.|+++..|-.+-+++.++.+
T Consensus 111 ~~s~~~l~~l~~~~-iKIaS~-------d~~--n~~Li~~i~k-~~kpviistG~~~~~ei~~~~~ 165 (295)
T d1vlia2 111 EGSADLLQSTSPSA-FKIASY-------EIN--HLPLLKYVAR-LNRPMIFSTAGAEISDVHEAWR 165 (295)
T ss_dssp HHHHHHHHTTCCSC-EEECGG-------GTT--CHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHH
T ss_pred ceeeeeecccCcce-eEeccc-------ccc--cHHHHHHHHh-cCCchheechhhhhhhHHHHHh
Confidence 46666655544444 334321 121 1367888755 4799999999999888877664
|
| >d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.79 E-value=0.85 Score=40.79 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhcc
Q 021527 78 TTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKR 154 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~ 154 (311)
.....+..=.+.|||++.+ |.|| +|+|+++++++ ++|+...- + -
T Consensus 244 eAl~e~~~D~~EGAD~lMVKPa~~y---------------------------LDii~~~k~~~~~~Pv~aYq----V--S 290 (340)
T d1h7na_ 244 LARRALERDMSEGADGIIVKPSTFY---------------------------LDIMRDASEICKDLPICAYH----V--S 290 (340)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSGGG---------------------------HHHHHHHHHHTTTSCEEEEE----C--H
T ss_pred HHHHHHHHHHhcCCCeEEecchHHH---------------------------HHHHHHHHHhCCCCCEEEEE----c--h
Confidence 3444444556689999999 5444 67999999887 69988741 1 1
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEE
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVL 197 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~ 197 (311)
|--..++.+.+.|. -|. ++ ..|....+++.|-+.|+
T Consensus 291 GEYami~~aa~~G~-----~d~--~~~~~E~l~~~kRAGAd~Ii 327 (340)
T d1h7na_ 291 GEYAMLHAAAEKGV-----VDL--KTIAFESHQGFLRAGARLII 327 (340)
T ss_dssp HHHHHHHHHHHTTS-----SCH--HHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHCCC-----CcH--HHHHHHHHHHHHhcCCCEEE
Confidence 22334555555551 111 11 34555566777776554
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=86.71 E-value=1.4 Score=37.90 Aligned_cols=126 Identities=12% Similarity=0.015 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC-----CCCCCC--------------hH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY-----SDPLAD--------------GP 108 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf-----sDP~aD--------------Gp 108 (311)
..+.+.++++++..+..++.=+.+.. +.......++.+.+.|+|.+-...-. .|+..+ |+
T Consensus 144 ~~~~~~~~~v~~~~~~pv~vKl~p~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~ 222 (311)
T d1juba_ 144 EATEKLLKEVFTFFTKPLGVKLPPYF-DLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGA 222 (311)
T ss_dssp HHHHHHHHHHTTTCCSCEEEEECCCC-SHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESG
T ss_pred HHHHHHHHHhhcccccceeecccccc-hhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCcccc
Confidence 45777788887777777777776543 55667778888999999999875432 122111 22
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEEEecCcchhccCH--HHHHHHHHHcCCcEEEec--------CC
Q 021527 109 VIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIALFTYYNPILKRGV--DNFMSTVRDIGIRGLVVP--------DV 176 (311)
Q Consensus 109 ~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiilm~Y~n~i~~~g~--~~fi~~~~~aGadGviip--------Dl 176 (311)
.+.. ..++.+.++++.+ ++||+..| |+ .+.+.++..+|||.|-+. ++
T Consensus 223 ~l~~-------------~al~~i~~i~~~~~~~~~Iig~G--------GI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~ 281 (311)
T d1juba_ 223 YIKP-------------TALANVRAFYTRLKPEIQIIGTG--------GIETGQDAFEHLLCGATMLQIGTALHKEGPAI 281 (311)
T ss_dssp GGHH-------------HHHHHHHHHHTTSCTTSEEEEES--------SCCSHHHHHHHHHHTCSEEEECHHHHHHCTHH
T ss_pred ccCc-------------hHHHHHHHHHHhcCCCeeEEecC--------CcCCHHHHHHHHHcCCCceeeeHhhHhcChHH
Confidence 2221 2256788887764 58888875 33 234455668999998883 32
Q ss_pred ChhhHHHHHHHHHHcCCCe
Q 021527 177 PLEETESLQKEAMKNKIEL 195 (311)
Q Consensus 177 p~ee~~~~~~~~~~~gi~~ 195 (311)
..+=..++.+.++++|++.
T Consensus 282 i~~i~~~L~~~m~~~G~~s 300 (311)
T d1juba_ 282 FDRIIKELEEIMNQKGYQS 300 (311)
T ss_dssp HHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 2122445667777777653
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=86.71 E-value=2.1 Score=35.49 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCCcEEEec-----CCChhh----HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 156 VDNFMSTVRDIGIRGLVVP-----DVPLEE----TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip-----Dlp~ee----~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
..++++.+.+.|++-|.+= ++..++ +..+.+.|+++|+.++ ++.. .+-..++ .++|+ .+.
T Consensus 32 ~~~~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~~~~li--Ind~--~~lA~~~--~adGv-Hl~---- 100 (226)
T d2tpsa_ 32 PVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFI--VNDD--VELALNL--KADGI-HIG---- 100 (226)
T ss_dssp HHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEE--EESC--HHHHHHH--TCSEE-EEC----
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHhCCeEE--EcCC--HHHHhhc--cCCEE-Eec----
Confidence 3468889999999998772 344444 4567888899997655 4432 2322221 24454 331
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.. ..+ +..+|+... +.++|.-+++.+++.+..+.|+|-+.+|..|--
T Consensus 101 ---~~-d~~------~~~~r~~~~-~~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T 147 (226)
T d2tpsa_ 101 ---QE-DAN------AKEVRAAIG-DMILGVSAHTMSEVKQAEEDGADYVGLGPIYPT 147 (226)
T ss_dssp ---TT-SSC------HHHHHHHHT-TSEEEEEECSHHHHHHHHHHTCSEEEECCSSCC
T ss_pred ---cc-cch------hhhhhhccc-ceeeeeeccchHHHHHHHhCcCCeEEEeccccc
Confidence 11 222 223333333 235788889999999999999999999987754
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=86.41 E-value=4.5 Score=33.25 Aligned_cols=102 Identities=17% Similarity=0.081 Sum_probs=67.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.++..+.++.|.+.|+.++|==+|..| ++..+++++++++||..--.. +
T Consensus 74 ~~~~A~~~~~~l~~~~i~~iEeP~~~~d-------------------------~~~~~~L~~~~~~pIa~~E~~-----~ 123 (242)
T d1muca1 74 DESQAIRACQVLGDNGIDLIEQPISRIN-------------------------RGGQVRLNQRTPAPIMADESI-----E 123 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCCEECCBCTTC-------------------------HHHHHHHHHHCSSCEEESTTC-----S
T ss_pred cHHHHHHHHHHhhhhhHHHhhcchhhhh-------------------------hhhhhhhhhhhhheeeccccc-----c
Confidence 4567888899999888888874222222 235667888889997664221 2
Q ss_pred CHHHHHHHHHHcCCcEEEecCC----ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDV----PLEETESLQKEAMKNKIELVLFTTPTTPTDR 207 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDl----p~ee~~~~~~~~~~~gi~~I~lisp~t~~er 207 (311)
+..+|.+. .+.|+-.++.+|+ .+.+..++.+.++++|+..++-....++...
T Consensus 124 ~~~~~~~~-i~~~~~d~~~~d~~~~GGit~~~~i~~~A~~~gi~~~~~~~~~~~i~~ 179 (242)
T d1muca1 124 SVEDAFSL-AADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIGLYGGTMLEGSIGT 179 (242)
T ss_dssp SHHHHHHH-HHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHH
T ss_pred cccchhhh-hhcccccccccccccchhHHHHHHHHHHHHhCCCCcccccccccccch
Confidence 44556554 4445444467773 3567888999999999987765555565444
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=86.39 E-value=1.1 Score=40.10 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=61.5
Q ss_pred EEEeCC-CCChhhHHHHHHHHHHCCCCEEEE---cCC----CCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC
Q 021527 67 PYITAG-DPDLSTTAEALKLLDSCGSDIIEL---GVP----YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM 138 (311)
Q Consensus 67 ~yi~~G-~P~~~~~~e~~~~L~~~GaD~IEl---G~P----fsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~ 138 (311)
..|==| ..+.+.+...++.+...|-+-|-| |+- +.....|- ..+..+++..
T Consensus 204 V~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~---------------------~~i~~~k~~~ 262 (338)
T d1vr6a1 204 VLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDI---------------------SAVPIIRKES 262 (338)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCT---------------------THHHHHHHHB
T ss_pred EEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccchhh---------------------cccceeeccc
Confidence 445555 578899999999999999877665 752 22223342 2333455567
Q ss_pred CCcEEEEecCcchhccCHH----HHHHHHHHcCCcEEEe---cC-----------CChhhHHHHHHHHH
Q 021527 139 SCPIALFTYYNPILKRGVD----NFMSTVRDIGIRGLVV---PD-----------VPLEETESLQKEAM 189 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~----~fi~~~~~aGadGvii---pD-----------lp~ee~~~~~~~~~ 189 (311)
..||++. |=...|-. ...+.+..+|+||+++ || +++++...+.+.++
T Consensus 263 ~lPVi~D----psHs~G~r~~v~~larAAvA~GadGl~iE~Hp~P~~AlsDg~q~l~~~~~~~ll~~l~ 327 (338)
T d1vr6a1 263 HLPILVD----PSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMK 327 (338)
T ss_dssp SSCEEEC----HHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHH
T ss_pred cCceeeC----CCCCCCchhHHHHHHHHHHHhCCCEEEEEeCCCcccCCCCccccCCHHHHHHHHHHHH
Confidence 8999884 22223333 3455678899999998 22 55666666555544
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=86.29 E-value=6.4 Score=32.26 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=34.1
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhh
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMV 283 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv 283 (311)
+.++++++.+++||+.|=-+.++++...+.+.| +|++.+--.-.
T Consensus 103 ~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~~~ 147 (243)
T d1nu5a1 103 GALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNM 147 (243)
T ss_dssp HHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHH
T ss_pred cccccchhccccccccccccccchhhhhccccccccccccccccc
Confidence 457778888888998888888888888888877 47887764433
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.27 E-value=4.8 Score=29.50 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCC-CeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEee
Q 021527 181 TESLQKEAMKNKI-ELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGF 257 (311)
Q Consensus 181 ~~~~~~~~~~~gi-~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGf 257 (311)
...+...+...|- +.|.. . .+..+-++.+.+.....+.+--.+. +. +-.++++++|+.. ..||++=.
T Consensus 14 ~~~l~~~L~~~~~~~~v~~-a-~~g~~al~~~~~~~~dlillD~~mP------~~--dG~e~~~~ir~~~~~~~~ii~~t 83 (123)
T d1dz3a_ 14 VSLLDEYISSQPDMEVIGT-A-YNGQDCLQMLEEKRPDILLLDIIMP------HL--DGLAVLERIRAGFEHQPNVIMLT 83 (123)
T ss_dssp HHHHHHHHHTSTTEEEEEE-E-SSHHHHHHHHHHHCCSEEEEESCCS------SS--CHHHHHHHHHHHCSSCCEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEE-E-CCHHHHHHHHHhcCCCEEEEcCCCC------CC--CHHHHHHHHHhcCCCCCeEEEEE
Confidence 3445566666552 33322 2 3445666666555566655521111 11 2357888998743 34577777
Q ss_pred CCCCHHHHHHHHHcCCcEEEE
Q 021527 258 GISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 258 GIst~e~v~~v~~~GADGvIV 278 (311)
+-.+.+...+..++||++++.
T Consensus 84 ~~~~~~~~~~a~~~Ga~~~l~ 104 (123)
T d1dz3a_ 84 AFGQEDVTKKAVELGASYFIL 104 (123)
T ss_dssp ETTCHHHHHHHHHTTCEEEEE
T ss_pred CcCCHHHHHHHHHCCCCEEEE
Confidence 778889999999999999864
|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]
Probab=86.26 E-value=4 Score=31.08 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=59.0
Q ss_pred EEecCCChhhHHHHHHHHHHcCCCe-EEEeCCCChHHHHHHHHHhC----------CceEEEE-ecCCccCCCCCCCchH
Q 021527 171 LVVPDVPLEETESLQKEAMKNKIEL-VLFTTPTTPTDRMKAIVEAS----------EGFVYLV-SSIGVTGARASISGHV 238 (311)
Q Consensus 171 viipDlp~ee~~~~~~~~~~~gi~~-I~lisp~t~~eri~~i~~~a----------~gfiY~v-s~~G~TG~~~~~~~~~ 238 (311)
|++.|=-.....-+...+++.|+.. |..+ .+..+-+..+.+.. ...+.+- -.-+. +-
T Consensus 9 ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a--~~g~eAl~~l~~~~~~~~~~~~~~pdlillD~~mP~~---------~G 77 (149)
T d1k66a_ 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRC--ITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGT---------DG 77 (149)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTBCSCEEEE--CSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSS---------CH
T ss_pred EEEEECCHHHHHHHHHHHHHcCCceEEEEE--CChHHHHHHHHhhccccccccccCCCeEEccccccCC---------Cc
Confidence 3444322234555777888888742 3322 34455554443321 1233331 11112 23
Q ss_pred HHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 239 QTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 239 ~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.++++++|+.. ++||++=.+-.+.++..+..+.|||+++.
T Consensus 78 ~el~~~ir~~~~~~~ipiI~lT~~~~~~~~~~~~~~Ga~~~l~ 120 (149)
T d1k66a_ 78 REVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIV 120 (149)
T ss_dssp HHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhccccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 57899998753 68988888888899999999999999865
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=86.17 E-value=3 Score=34.72 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=60.8
Q ss_pred ChhhHHHHHHHHHH-CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDS-CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~-~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~ 153 (311)
+.+++.+.++.|++ .++.++|==+|..| ++..+++++.+++||..--. .
T Consensus 78 ~~~~A~~~~~~l~~~~~i~~~EeP~~~~d-------------------------~~~~~~l~~~~~ipIa~gE~-----~ 127 (256)
T d2gdqa1 78 DAAAAFKWERYFSEWTNIGWLEEPLPFDQ-------------------------PQDYAMLRSRLSVPVAGGEN-----M 127 (256)
T ss_dssp CHHHHHTTHHHHTTCSCEEEEECCSCSSC-------------------------HHHHHHHHTTCSSCEEECTT-----C
T ss_pred CHHHHHHHHHHHhhcCceeEeccccccch-------------------------HHHHHHHhhcccceeecCcc-----c
Confidence 45677778888877 46677775333222 24667788889999765321 1
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCC----hhhHHHHHHHHHHcCCCeEE
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVP----LEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp----~ee~~~~~~~~~~~gi~~I~ 197 (311)
++..+|.+.+..-.+|. +.||+. +.+..++.+.++.+|+...+
T Consensus 128 ~~~~~~~~~i~~~a~di-~~~d~~~~GGit~~~~i~~~a~~~~i~v~~ 174 (256)
T d2gdqa1 128 KGPAQYVPLLSQRCLDI-IQPDVMHVNGIDEFRDCLQLARYFGVRASA 174 (256)
T ss_dssp CSHHHHHHHHHTTCCSE-ECCCTTTTTHHHHHHHHHHHHHHHTCEECC
T ss_pred cchhhHHHHHHhhccee-eeccccccccHHHHHHHHHHHhhhcccccc
Confidence 35566777555544555 688875 35788899999999997544
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=86.06 E-value=2.2 Score=31.38 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=46.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc---CCCcEEEEecCcchhccCH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ---MSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~---~~iPiilm~Y~n~i~~~g~ 156 (311)
.+.+..+.+.-.|.|-+++-- |-.|| ++.++++|+. .++|+++++-.+ .
T Consensus 35 ~~al~~~~~~~~dlil~D~~m--p~~dG--------------------~el~~~ir~~~~~~~iPii~lt~~~------~ 86 (123)
T d1mb3a_ 35 LSALSIARENKPDLILMDIQL--PEISG--------------------LEVTKWLKEDDDLAHIPVVAVTAFA------M 86 (123)
T ss_dssp HHHHHHHHHHCCSEEEEESBC--SSSBH--------------------HHHHHHHHHSTTTTTSCEEEEC----------
T ss_pred HHHHHHHHhCCCCEEEEEecc--CCCcH--------------------HHHHHHHHhCCCcCCCCeEEEEEec------C
Confidence 555666667779999887544 55677 5566677643 578999886332 2
Q ss_pred HHHHHHHHHcCCcEEEecCCChhh
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEE 180 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee 180 (311)
......+.++|+++++.=-+..++
T Consensus 87 ~~~~~~~~~~G~~~~l~KP~~~~~ 110 (123)
T d1mb3a_ 87 KGDEERIREGGCEAYISKPISVVH 110 (123)
T ss_dssp --CHHHHHHHTCSEEECSSCCHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCHHH
Confidence 334456788999998775343344
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=85.64 E-value=3.5 Score=33.92 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
.+.++++|+.+++||+.|=.+.++.++.++.+.| +|++.+-
T Consensus 96 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d 137 (244)
T d1wufa1 96 FVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLK 137 (244)
T ss_dssp SHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred hhhhhccccccccccccCccccchhhhhhhccccccceeecc
Confidence 3568889999999999999999999999999888 4888763
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=85.13 E-value=1.5 Score=35.19 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=33.7
Q ss_pred hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 237 HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 237 ~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+.++.++. +..+.+.+||+ .+++.+..+.|+|.+.+|+-...
T Consensus 112 ~~~~av~~i~~--~~~lEaSGgI~-~~ni~~ya~~GVD~IS~galt~~ 156 (167)
T d1qapa1 112 QMREAVKRVNG--QARLEVSGNVT-AETLREFAETGVDFISVGALTKH 156 (167)
T ss_dssp HHHHHHHTTCT--TCCEEECCCSC-HHHHHHHHHTTCSEEECSHHHHE
T ss_pred HHHHHHHhcCC--ceEEEEeCCCC-HHHHHHHHHcCCCEEECCcccCC
Confidence 34444444322 46788999996 89999999999999999876543
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=85.12 E-value=7.5 Score=30.70 Aligned_cols=50 Identities=14% Similarity=0.051 Sum_probs=30.2
Q ss_pred hhHHHHHHHHH-HHcCCccEEEEEeCCCCCh--hhHHHHHHHHHHCCCCEEEEc
Q 021527 47 TVGLAETFTRL-KKQGKVALIPYITAGDPDL--STTAEALKLLDSCGSDIIELG 97 (311)
Q Consensus 47 m~~i~~~f~~~-~~~~~~~li~yi~~G~P~~--~~~~e~~~~L~~~GaD~IElG 97 (311)
+..+.+..... .++||+.=+..-+.| +|. -...-+...|.++|.+++-+|
T Consensus 20 ~e~lr~~~~~~~~~~gr~pkVlla~~g-~D~Hd~G~~~va~~l~~~G~eVi~lg 72 (168)
T d7reqa2 20 VEEARELVEEFEQAEGRRPRILLAKMG-QDGHDRGQKVIATAYADLGFDVDVGP 72 (168)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEEECBT-TCCCCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeCC-ccHHHHHHHHHHHHHHhCCcceecCC
Confidence 34444444432 345666555555666 443 334455678889999999888
|
| >d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.70 E-value=1 Score=40.12 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 78 TTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.....+..=.+.|||+|.+ |.|| +++|+++|+++++|+...- + -|
T Consensus 235 eA~~e~~~D~~EGAD~lMVKPa~~y---------------------------LDii~~~~~~~~~Pv~aYq----V--SG 281 (329)
T d1gzga_ 235 EALHEVAADLAEGADMVMVKPGMPY---------------------------LDIVRRVKDEFRAPTFVYQ----V--SG 281 (329)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSGGG---------------------------HHHHHHHHHHHCSCEEEEE----C--HH
T ss_pred HHHHHHHHHHhcCCCeEEeccchhh---------------------------hHHHHHHHHccCCCEEEEe----C--ch
Confidence 4444445556678999999 4444 6799999999999987731 1 13
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~ 197 (311)
--..++.+.+.|. + | . +-..|....+++.|-+.|+
T Consensus 282 EYami~~a~~~g~----~-~-~-~~~~E~l~~~kRAGAd~Ii 316 (329)
T d1gzga_ 282 EYAMHMGAIQNGW----L-A-E-SVILESLTAFKRAGADGIL 316 (329)
T ss_dssp HHHHHHHHHHTTS----S-C-T-THHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHcCC----c-c-h-hHHHHHHHHHHhcCCCEEE
Confidence 3345566666662 2 2 1 2345566667888988765
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=84.64 E-value=7.6 Score=31.75 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEh
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVG 279 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVG 279 (311)
+.++++|+.+++||+.|=.+.++++..++++.| +|.+.+-
T Consensus 103 ~~~~~L~~~~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d 143 (242)
T d1muca1 103 GGQVRLNQRTPAPIMADESIESVEDAFSLAADGAASIFALK 143 (242)
T ss_dssp HHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred hhhhhhhhhhhheeecccccccccchhhhhhcccccccccc
Confidence 346666666777777777777777777777655 5666663
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=84.24 E-value=9.2 Score=30.98 Aligned_cols=44 Identities=7% Similarity=0.029 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAM 282 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSai 282 (311)
.+.++++|+.+++||+.|=.+.+.++...+.+.| +|.+.+-..-
T Consensus 96 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~~~ 140 (241)
T d1wuea1 96 FLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSINLKIPR 140 (241)
T ss_dssp SHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred hhhhhhhhcccccccccCcccccchhhhhhhhhhhhhhhcccccc
Confidence 3568899999999999999999999999999887 6999886443
|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: KguE-like domain: Hypothetical protein PA2260 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.10 E-value=1.6 Score=36.07 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=57.0
Q ss_pred HHHHHHHHCCCCEEEEcCCC-CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc-----chhcc
Q 021527 81 EALKLLDSCGSDIIELGVPY-SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN-----PILKR 154 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~Pf-sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n-----~i~~~ 154 (311)
+.++.+.+.|+|.||+..++ .+| .| + +.+++..++..+.+....+.. .-..-
T Consensus 23 ~~l~~~a~~G~dgIEi~~~~~~~~-~~---~------------------~~l~~~~~~~GL~i~~~~~~~~~~~~~~~~~ 80 (250)
T d1yx1a1 23 SFLPLLAMAGAQRVELREELFAGP-PD---T------------------EALTAAIQLQGLECVFSSPLELWREDGQLNP 80 (250)
T ss_dssp GGHHHHHHHTCSEEEEEGGGCSSC-CC---H------------------HHHHHHHHHTTCEEEEEEEEEEECTTSSBCT
T ss_pred HHHHHHHHhCCCEEEEecccCCCc-ch---H------------------HHHHHHHHHcCCEEEEecccccccCchhhHH
Confidence 45777889999999995433 332 11 1 123333333455554332111 11122
Q ss_pred CHHHHHHHHHHcCCcEEEec--CCCh-hhHHHHHHHHHHcCCCeEE
Q 021527 155 GVDNFMSTVRDIGIRGLVVP--DVPL-EETESLQKEAMKNKIELVL 197 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviip--Dlp~-ee~~~~~~~~~~~gi~~I~ 197 (311)
-..+.++.+++.|+..|.++ +.+. +...++.+.++++|+.+.+
T Consensus 81 ~~~~~i~~A~~LG~~~v~~~~g~~~~~~~l~~l~~~a~~~Gv~l~i 126 (250)
T d1yx1a1 81 ELEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQLLV 126 (250)
T ss_dssp THHHHHHHHHHTTCSEEEEEEECCCSSCCHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeecccchhHHHHHHHHHHHHcCCEEEE
Confidence 34678889999999998873 3333 3477788999999986544
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=84.10 E-value=8.7 Score=32.43 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCcEEEec-------------------------------CCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 157 DNFMSTVRDIGIRGLVVP-------------------------------DVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip-------------------------------Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
.+.++.++++|+|+|=+- .++.++..++.+.|++.|+.. +++|-. .
T Consensus 37 ~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~~i~~--~~s~fd-~ 113 (280)
T d2zdra2 37 FEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIF--ISTPFS-R 113 (280)
T ss_dssp HHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEE--EEEECS-H
T ss_pred HHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHHHHhcCCcc--ccccch-h
Confidence 457778888888887652 144456777889999988754 456554 3
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG 270 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~ 270 (311)
+.+..+.+....+ |-+++. .+. -..+|+.+.+ +++||++..|-++-+++.++..
T Consensus 114 ~s~~~~~~~~~~~-~KIaS~-------d~~--n~~Li~~i~k-~~kpiiiStG~s~~~EI~~av~ 167 (280)
T d2zdra2 114 AAALRLQRMDIPA-YKIGSG-------ECN--NYPLIKLVAS-FGKPIILSTGMNSIESIKKSVE 167 (280)
T ss_dssp HHHHHHHHHTCSC-EEECGG-------GTT--CHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHH
T ss_pred hcccccccccccc-eeccch-------hcc--ccHhhhhhhh-ccCceeecccccchhHhhhhhh
Confidence 4444454444343 334321 111 1357777754 5899999999999998888776
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=83.94 E-value=14 Score=32.73 Aligned_cols=218 Identities=13% Similarity=0.152 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE---------cCCC-CCCCCChHHHHHHHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL---------GVPY-SDPLADGPVIQAAATRS 117 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl---------G~Pf-sDP~aDGp~Iq~a~~~A 117 (311)
..+.+.|+..++. +-++-.|= --+++...-++++.++....+|-= |.++ .+=...+...-.+
T Consensus 15 ~nlk~~L~~A~~~-~yAV~AfN---v~n~e~~~Aii~AAee~~sPvIlq~s~g~~~y~gg~~~~~~~~~~~~~~~~---- 86 (358)
T d1dosa_ 15 DDVQKVFQVAKEN-NFALPAVN---CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGA---- 86 (358)
T ss_dssp HHHHHHHHHHHHT-TCCEEEEE---CCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHH----
T ss_pred HHHHHHHHHHHHC-CceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEecccHHHHcCccchhhhHHhHHHHHHH----
Confidence 3568888877655 44555555 345788899999999999988752 2111 0101111111110
Q ss_pred HHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcC-----------CcEEEe--cCCChhh----
Q 021527 118 LARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIG-----------IRGLVV--PDVPLEE---- 180 (311)
Q Consensus 118 l~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG-----------adGvii--pDlp~ee---- 180 (311)
.....+++.+.++.++||.|..-= =... .-++++.|.++| .+.|.+ .-+|+||
T Consensus 87 -------~~~a~~v~~~a~~~~VPV~lHLDH--g~~~-~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS~l~~eeNi~~ 156 (358)
T d1dosa_ 87 -------ISGAHHVHQMAEHYGVPVILHTDH--CAKK-LLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEI 156 (358)
T ss_dssp -------HHHHHHHHHHHHHHTCEEEEEECC--CCGG-GHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHHHH
T ss_pred -------HHHHHHHHHHHHhCCCCEEEecCc--cchh-hHHHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCHHHHHHH
Confidence 111246666667789999996410 0000 124566666666 899887 3688887
Q ss_pred HHHHHHHHHHcCCCeEE----Ee---------------CCCChHHHH---HHHHHhCCceEEEE----ecCCcc-CCCCC
Q 021527 181 TESLQKEAMKNKIELVL----FT---------------TPTTPTDRM---KAIVEASEGFVYLV----SSIGVT-GARAS 233 (311)
Q Consensus 181 ~~~~~~~~~~~gi~~I~----li---------------sp~t~~eri---~~i~~~a~gfiY~v----s~~G~T-G~~~~ 233 (311)
..++.+.++++|+.+=- +- .-|.|++-. ++.. ...|...+- +..|.+ +....
T Consensus 157 Tk~vve~Ah~~gv~VEaElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~-~~tgvD~LAvaiGt~HG~Yk~~~~~ 235 (358)
T d1dosa_ 157 CSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELS-KISPRFTIAASFGNVHGVYKAGNVV 235 (358)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHH-TTCSCEEEECCSSCCCSSCCCSCCC
T ss_pred HHHHHHHHhhhCCeEEEeeeeeecccCCccccccchhhccCCHHHHHHHHHHHh-ccCccceeeeeccchhhhcCCCCcc
Confidence 57788889998874210 00 023444332 2222 235666563 333332 11112
Q ss_pred CCch-HHHHHHHHhhcCCCc-----EEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 234 ISGH-VQTLLREIKESSTKP-----VAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 234 ~~~~-~~~~l~~vk~~~~~P-----v~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+.+. ..+.++++++.+++| ++. |.|+. .|++++..+.|.-=|=|+|.+-..
T Consensus 236 l~p~l~~~~~~~i~~~~~vp~~~~~LVlHGgSGip-~e~i~~ai~~GV~KiNi~Tdlr~a 294 (358)
T d1dosa_ 236 LTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGST-AQEIKDSVSYGVVKMNIDTDTQWA 294 (358)
T ss_dssp CCTHHHHHHHHHHHHHHTCCTTCSCEEECSCTTCC-HHHHHHHHHTTEEEEEECHHHHHH
T ss_pred CCchhhHHHHHHHHHHhCCCCcccceeccCCCCCc-HHHHHHHHHcCCeEEeeChHHHHH
Confidence 3333 456677787777766 655 66775 799999999998888899887643
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=83.84 E-value=6.1 Score=29.65 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=58.3
Q ss_pred EEecCCChhhHHHHHHHHHHcCCCe-EEEeCCCChHHHHHHHHHhC-----Cce-EEEEecCCccCCCCCCCchHHHHHH
Q 021527 171 LVVPDVPLEETESLQKEAMKNKIEL-VLFTTPTTPTDRMKAIVEAS-----EGF-VYLVSSIGVTGARASISGHVQTLLR 243 (311)
Q Consensus 171 viipDlp~ee~~~~~~~~~~~gi~~-I~lisp~t~~eri~~i~~~a-----~gf-iY~vs~~G~TG~~~~~~~~~~~~l~ 243 (311)
|++.|=-......+...+++.|... |..+ .+..+-+..+.+.. ..+ +.+.... .- + .+-.++++
T Consensus 5 ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a--~~g~eAl~~l~~~~~~~~~~~pdlillD~~-mP----~--~dG~el~~ 75 (140)
T d1k68a_ 5 IFLVEDNKADIRLIQEALANSTVPHEVVTV--RDGMEAMAYLRQEGEYANASRPDLILLDLN-LP----K--KDGREVLA 75 (140)
T ss_dssp EEEECCCHHHHHHHHHHHHTCSSCCEEEEE--CSHHHHHHHHTTCGGGGSCCCCSEEEECSS-CS----S--SCHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CCHHHHHHHHHHhHHhhccCCCCEEEEeec-cc----c--ccChHHHH
Confidence 3444422233455677788878642 3322 34455554443211 112 2222211 10 1 12357888
Q ss_pred HHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 244 EIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 244 ~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
++|+.- ++||++=.+-.+.+++.+.++.||++.++
T Consensus 76 ~ir~~~~~~~iPvI~ls~~~~~~~~~~a~~~Ga~~yl~ 113 (140)
T d1k68a_ 76 EIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYIT 113 (140)
T ss_dssp HHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred HHHhCcccCCCcEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 888753 68999988988999999999999999866
|
| >d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Staphylococcus aureus [TaxId: 1280]
Probab=83.61 E-value=2.5 Score=35.35 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCccEEE-EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 49 GLAETFTRLKKQGKVALIP-YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~-yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
+..+.+...++.+.+.++- |-.-+.|+.+...+.++.+.+.|+|++=+-..-.++ . ..-.+
T Consensus 111 ~~~~~~~~~~~~~~~vI~S~H~f~~TP~~~el~~~~~~~~~~gaDivKia~~~~~~---~---------------D~~~l 172 (236)
T d1sfla_ 111 KHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNK---N---------------DVLNL 172 (236)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEEECCSSH---H---------------HHHHH
T ss_pred HHHHHHHHhhcCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEecCCH---H---------------HHHHH
Confidence 3445555666666555544 557889999999999999999999999986544442 0 01133
Q ss_pred HHHHHHhhccCCCcEEEEe
Q 021527 128 LSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~ 146 (311)
++...++++..++|++.|+
T Consensus 173 l~~~~~~~~~~~~pii~~~ 191 (236)
T d1sfla_ 173 LQAMSTFSDTMDCKVVGIS 191 (236)
T ss_dssp HHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHhhccCCCEEEEe
Confidence 4455566666789999876
|
| >d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.61 E-value=1.2 Score=39.44 Aligned_cols=82 Identities=17% Similarity=0.314 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 77 STTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
...+..+..=.+.|||++.+ |.|| +++|+++|++ .++|+...- +
T Consensus 222 ~eA~~e~~~D~~EGAD~lMVKPa~~y---------------------------LDiI~~~k~~~~~~Pv~aYq----V-- 268 (320)
T d1pv8a_ 222 GLALRAVDRDVREGADMLMVKPGMPY---------------------------LDIVREVKDKHPDLPLAVYH----V-- 268 (320)
T ss_dssp HHHHHHHHHHHHTTCSBEEEESCGGG---------------------------HHHHHHHHHHSTTSCEEEEE----C--
T ss_pred HHHHHHHHHHHhcCCceEeeehhHHH---------------------------HHHHHHHHhhCCCCCEEEEE----c--
Confidence 44555555556789999999 4333 6799999988 589988741 1
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~ 197 (311)
-|--..++.+.+.|. -|.. +-..|....+++.|-+.|+
T Consensus 269 SGEYami~aa~~~g~-----~d~~-~~~~E~l~~~kRAGAd~Ii 306 (320)
T d1pv8a_ 269 SGEFAMLWHGAQAGA-----FDLK-AAVLEAMTAFRRAGADIII 306 (320)
T ss_dssp HHHHHHHHHHHHTTS-----SCHH-HHHHHHHHHHHHHTCSEEE
T ss_pred cHHHHHHHHHHHCCC-----CchH-HHHHHHHHHHHhcCCCEEE
Confidence 133345555555551 1110 1134455556677776654
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=83.49 E-value=6.9 Score=32.89 Aligned_cols=92 Identities=16% Similarity=0.274 Sum_probs=56.5
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MS 139 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~ 139 (311)
+|..+ .+-.|.++.+.+++.++..++.|+|.+.+--||.-+..+ +++++..+++.+. .+
T Consensus 70 ~~~pv--i~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p~~~~~~~------------------~~~~~~~~~~~~~~~~ 129 (295)
T d1hl2a_ 70 GKIKL--IAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSF------------------EEHCDHYRAIIDSADG 129 (295)
T ss_dssp TTSEE--EEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH------------------HHHHHHHHHHHHHHTT
T ss_pred cccce--eeccccchhhHHHHHHHHHHhcCCceeeeeeccccCCCh------------------HHHHHHHHHHhcccCc
Confidence 44444 356788999999999999999999999999888654333 2334444444433 46
Q ss_pred CcEEEEecCcchh---ccCHHHHHHHHHHc-CCcEEEecC
Q 021527 140 CPIALFTYYNPIL---KRGVDNFMSTVRDI-GIRGLVVPD 175 (311)
Q Consensus 140 iPiilm~Y~n~i~---~~g~~~fi~~~~~a-GadGviipD 175 (311)
.|+++ |.+|.. .+.. +.+.++.+. .+-|+=...
T Consensus 130 ~~ii~--y~~P~~~g~~l~~-~~l~~L~~~pnvvgiK~~~ 166 (295)
T d1hl2a_ 130 LPMVV--YNIPARSGVKLTL-DQINTLVTLPGVGALKQTS 166 (295)
T ss_dssp SCEEE--EECHHHHCCCCCH-HHHHHHHTSTTEEEEEECC
T ss_pred Ccccc--ccccccccccccc-ccccccccCcchhhhcccc
Confidence 77775 444542 1222 345545443 344544443
|
| >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=83.46 E-value=4.2 Score=32.04 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=58.0
Q ss_pred ChhHHHHHHHHHH----HcCCccEEEEEeCCCCCh-h-hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 021527 46 PTVGLAETFTRLK----KQGKVALIPYITAGDPDL-S-TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA 119 (311)
Q Consensus 46 ~m~~i~~~f~~~~----~~~~~~li~yi~~G~P~~-~-~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~ 119 (311)
+..|+.+.|..+| ..|++.-+...+.|.+-. . +.-=....+..+|.+.+. +-.|+ | .
T Consensus 14 ~~~R~ae~fE~LR~~~~~~g~rP~v~la~lG~~a~h~ara~f~~n~f~~gGfev~~-~~~~~-~---~------------ 76 (163)
T d7reqb2 14 AWHRDSEVFEQLMDRSTSVSERPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQ-VEGGT-T---A------------ 76 (163)
T ss_dssp CCCCTTHHHHHHHHHHHHSSSCCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCE-EESCC-H---H------------
T ss_pred ccccchhHHHHHHHHHHhcCCCCeEEEEcCCChhhhhhHHHHHHHHHHccCeeecc-CCCCC-c---H------------
Confidence 4557777777766 347777777889998863 2 222345567788999887 42231 1 1
Q ss_pred cCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 120 RGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 120 ~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
+.++.+++ .+..+++++-.+..|..-..+.++.++++|.+-+++.
T Consensus 77 ---------e~v~aa~~-~~a~vvvicssd~~y~~~~~~~~~aLk~ag~~~~vla 121 (163)
T d7reqb2 77 ---------EIVEAFKK-SGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLS 121 (163)
T ss_dssp ---------HHHHHHHH-HTCSEEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ---------HHHHHHHh-CCCCEEEEecCccchHHHHHHHHHHHHhcccceeEEE
Confidence 12222221 2455666665554444444556666666666655543
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Probab=82.65 E-value=12 Score=31.32 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhh------HHHHHHHHHHcCCCeEEEeCCC---ChHHHHHHHHHhCCceEEEEecC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEE------TESLQKEAMKNKIELVLFTTPT---TPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee------~~~~~~~~~~~gi~~I~lisp~---t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
.+.+.++.+++.|+.-. ..+-.+|. ..+|.+.|++.|++.|=+..-+ ..+++...|.....+|. +.+-.
T Consensus 57 ~L~eKI~l~~~~~V~v~-~GGtlfE~a~~~~~~~~y~~~~~~lGf~~iEiSdg~i~i~~~~~~~~I~~~~~~~~-V~sEv 134 (249)
T d1u83a_ 57 DLEEKISTLKEHDITFF-FGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDEFL-VLSEV 134 (249)
T ss_dssp THHHHHHHHHHTTCEEE-ECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTTSE-EEEEC
T ss_pred HHHHHHHHHHHcCCeEe-CCCHHHHHHHHcCCHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhcCe-ecccc
Confidence 36778888888877653 22211232 5678888899999888764321 22355555555566664 33433
Q ss_pred C
Q 021527 226 G 226 (311)
Q Consensus 226 G 226 (311)
|
T Consensus 135 G 135 (249)
T d1u83a_ 135 G 135 (249)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Methylesterase CheB, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=82.51 E-value=6.1 Score=29.53 Aligned_cols=73 Identities=23% Similarity=0.384 Sum_probs=49.7
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc-EEEEecC
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP-IALFTYY 148 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP-iilm~Y~ 148 (311)
+++++ .+.++.+.+.-.|+|-+++-- |-.|| ++.++++|+....| +++++..
T Consensus 34 ~a~~g-----~~al~~~~~~~pDlvllDi~M--P~~dG--------------------~e~~~~ir~~~~~~~i~i~~~~ 86 (140)
T d1a2oa1 34 TAPDP-----LVARDLIKKFNPDVLTLDVEM--PRMDG--------------------LDFLEKLMRLRPMPVVMVSSLT 86 (140)
T ss_dssp EESSH-----HHHHHHHHHHCCSEEEEECCC--SSSCH--------------------HHHHHHHHHSSCCCEEEEECCT
T ss_pred EECCH-----HHHHHHHHhcCCCEEEEcCCC--CCCCH--------------------HHHHHHHHHhCCCCcEEEEEec
Confidence 56666 667777778889999998654 66788 56788888765444 4443322
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
+ . ..+....+.+.|+++++.=
T Consensus 87 ~----~-~~~~~~~al~~Ga~~yl~K 107 (140)
T d1a2oa1 87 G----K-GSEVTLRALELGAIDFVTK 107 (140)
T ss_dssp H----H-HHHHHHHHHHHTCCEEEEC
T ss_pred C----C-ChHHHHHHHHcCCCEEEEC
Confidence 1 0 1345667889999999873
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.40 E-value=0.2 Score=40.71 Aligned_cols=47 Identities=23% Similarity=0.186 Sum_probs=36.4
Q ss_pred chHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 236 GHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 236 ~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+++.+.++.+++.. ++-+.+.+||+ ++++.++.+.|+|.+.+|+-..
T Consensus 110 e~~k~~~~~lk~~~~~i~lEaSGGI~-~~ni~~~a~~GVD~Is~g~lt~ 157 (170)
T d1o4ua1 110 EEVKDISRRIKDINPNVIVEVSGGIT-EENVSLYDFETVDVISSSRLTL 157 (170)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEECCC-TTTGGGGCCTTCCEEEEGGGTS
T ss_pred hhHhHHHHHHHhhCCcEEEEEECCCC-HHHHHHHHHcCCCEEEcCcccc
Confidence 44556666676654 46788999996 7999999999999998886544
|
| >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=81.95 E-value=0.68 Score=36.98 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=64.5
Q ss_pred HHHHHHHHhhcc-CCCcEEEEecCcchhccCH-HHHHHHH-HHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC
Q 021527 126 AILSMLKEVVPQ-MSCPIALFTYYNPILKRGV-DNFMSTV-RDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT 202 (311)
Q Consensus 126 ~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~-~~fi~~~-~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~ 202 (311)
+-|+.++.-.+. -+-|-+++.-+.+.-.+.. .+|+..+ ...|.+-+-..+.+.+| ..+.+++.|.+.+.+++..
T Consensus 20 e~fE~LR~~~~~~g~rP~v~la~lG~~a~h~ara~f~~n~f~~gGfev~~~~~~~~~e---~v~aa~~~~a~vvvicssd 96 (163)
T d7reqb2 20 EVFEQLMDRSTSVSERPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAE---IVEAFKKSGAQVADLCSSA 96 (163)
T ss_dssp HHHHHHHHHHHHSSSCCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEESCCHHH---HHHHHHHHTCSEEEEECCH
T ss_pred hHHHHHHHHHHhcCCCCeEEEEcCCChhhhhhHHHHHHHHHHccCeeeccCCCCCcHH---HHHHHHhCCCCEEEEecCc
Confidence 334555443222 3457566544333321111 3577654 44556554434444333 3455566676666665421
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
..-. +...+.++.+|+. .+..+++|.++. +++...+.+.|+|++|
T Consensus 97 --~~y~---------------------------~~~~~~~~aLk~ag~~~~vlaGg~~~-~~d~~~l~~aGVd~~i 142 (163)
T d7reqb2 97 --KVYA---------------------------QQGLEVAKALKAAGAKALYLSGAFKE-FGDDAAEAEKLIDGRL 142 (163)
T ss_dssp --HHHH---------------------------HHHHHHHHHHHHTTCSEEEEESCGGG-GGGGHHHHHHHCCEEE
T ss_pred --cchH---------------------------HHHHHHHHHHHhcccceeEEEecCCC-cccHHHHHhCCCCeEe
Confidence 1111 1223567777775 356677887775 5788889999999986
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=81.80 E-value=8 Score=31.26 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+...+.++.|++.+.++..+-=|+. .. + ++..+++++..++||.+--. .++
T Consensus 73 ~~~a~~~~~~le~~~~~i~~~EeP~~----~~---------------d----~~~~~~l~~~~~~pia~gE~-----~~~ 124 (234)
T d1jpma1 73 PKEAVTAIRKMEDAGLGIELVEQPVH----KD---------------D----LAGLKKVTDATDTPIMADES-----VFT 124 (234)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCSC----TT---------------C----HHHHHHHHHHCSSCEEESTT-----CSS
T ss_pred hHHHHHHHHHHHhccCceeeecCCcc----cc---------------C----HHHHHHhhccccceeecccc-----ccc
Confidence 45566777777766665555543441 10 1 34667888888999877432 245
Q ss_pred HHHHHHHHHHcCCcEEEecCC----ChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 156 VDNFMSTVRDIGIRGLVVPDV----PLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDl----p~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
...|.+.+....+|. +.+|+ .+.+..+....++++|+..++-....++..
T Consensus 125 ~~~~~~~i~~~~~d~-v~~d~~~~GGit~~~~i~~~a~~~g~~~~~~~~~~~~i~ 178 (234)
T d1jpma1 125 PRQAFEVLQTRSADL-INIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLG 178 (234)
T ss_dssp HHHHHHHHHTTCCSE-EEECHHHHTSHHHHHHHHHHHHHTTCCEEECCSSCCHHH
T ss_pred chhhhhhhccCCcCe-EEEeeecCCCHHHHHHHHHHHHhcCeeEeecccccCCch
Confidence 666776555444555 57774 356888899999999998766555555543
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=81.55 E-value=3.7 Score=29.99 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=48.8
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.-.|.|-+++-. |-.|| ++.++++|+. ...|+++++.++.. .
T Consensus 36 ~~al~~l~~~~~dlillD~~m--p~~~G--------------------~~~~~~~r~~~~~~~ii~lt~~~~~------~ 87 (121)
T d1mvoa_ 36 EEALKKAETEKPDLIVLDVML--PKLDG--------------------IEVCKQLRQQKLMFPILMLTAKDEE------F 87 (121)
T ss_dssp HHHHHHHHHHCCSEEEEESSC--SSSCH--------------------HHHHHHHHHTTCCCCEEEEECTTCC------C
T ss_pred HHHHHHHhcccccEEEecccc--cCCCC--------------------chhhhhhhccCCCCEEEEEEeeCCH------H
Confidence 455666667779999998655 55677 4466666654 56888888754422 2
Q ss_pred HHHHHHHcCCcEEEecCCChhhH
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEET 181 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~ 181 (311)
....+.++|+++++.=-+..++.
T Consensus 88 ~~~~~~~~Ga~~yl~KP~~~~~L 110 (121)
T d1mvoa_ 88 DKVLGLELGADDYMTKPFSPREV 110 (121)
T ss_dssp CHHHHHHTTCCEEEESSCCHHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHH
Confidence 34467889999988853444553
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=81.49 E-value=2.6 Score=30.99 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=44.7
Q ss_pred CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcC
Q 021527 89 CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIG 167 (311)
Q Consensus 89 ~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG 167 (311)
.-.|.|-+++-. |-.|| ++.++++|+. .++|+++++-++ -......+.++|
T Consensus 42 ~~~dlillD~~m--P~~~G--------------------~~~~~~lr~~~~~~~ii~it~~~------~~~~~~~a~~~G 93 (120)
T d1p2fa2 42 EAFHVVVLDVML--PDYSG--------------------YEICRMIKETRPETWVILLTLLS------DDESVLKGFEAG 93 (120)
T ss_dssp SCCSEEEEESBC--SSSBH--------------------HHHHHHHHHHCTTSEEEEEESCC------SHHHHHHHHHHT
T ss_pred CCCCEEEEeCcc--cccch--------------------hHHHHHHhhcCCCCcEEEEecCC------CHHHHHHHHHCC
Confidence 358999887543 55667 4566666643 678999987543 245666788999
Q ss_pred CcEEEecCCChhhH
Q 021527 168 IRGLVVPDVPLEET 181 (311)
Q Consensus 168 adGviipDlp~ee~ 181 (311)
+++++.=-+..++.
T Consensus 94 a~dyl~KP~~~~~L 107 (120)
T d1p2fa2 94 ADDYVTKPFNPEIL 107 (120)
T ss_dssp CSEEEESSCCHHHH
T ss_pred CCEEEECCCCHHHH
Confidence 99998864555553
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=81.23 E-value=2.6 Score=35.83 Aligned_cols=93 Identities=12% Similarity=0.056 Sum_probs=64.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.++.++.++.|++.+..++|==+|-.| ++..+++|+++++||..--. .+
T Consensus 106 ~~~~Ai~~~~~L~~~~l~wiEePi~~~d-------------------------~~~~~~L~~~~~ipIa~gE~-----~~ 155 (278)
T d2gl5a1 106 GTNSAIQFAKAIEKYRIFLYEEPIHPLN-------------------------SDNMQKVSRSTTIPIATGER-----SY 155 (278)
T ss_dssp CHHHHHHHHHHHGGGCEEEEECSSCSSC-------------------------HHHHHHHHHHCSSCEEECTT-----CC
T ss_pred cchhhHHHHHHhcccccceecccccccc-------------------------hhhhhhhccccccceecccc-----cC
Confidence 4688999999999999988885322222 23556778889999866321 23
Q ss_pred CHHHHHHHHHHcCCcEEEecCCC----hhhHHHHHHHHHHcCCCeEEE
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVP----LEETESLQKEAMKNKIELVLF 198 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp----~ee~~~~~~~~~~~gi~~I~l 198 (311)
+...|.+.+....+|. +-||+. +.+..++...+..+|+...+-
T Consensus 156 ~~~~~~~~i~~~a~di-~~~d~~~~GGit~~~kia~la~~~gi~v~~H 202 (278)
T d2gl5a1 156 TRWGYRELLEKQSIAV-AQPDLCLCGGITEGKKICDYANIYDTTVQVH 202 (278)
T ss_dssp TTHHHHHHHHTTCCSE-ECCCTTTTTHHHHHHHHHHHHHTTTCEECCC
T ss_pred ChHHHhhhhcccccee-EeeccccccchhhHHHhhhhhhhhccccccc
Confidence 4566666555544555 688875 357888889999999976543
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=81.20 E-value=5.6 Score=33.72 Aligned_cols=191 Identities=11% Similarity=0.059 Sum_probs=100.1
Q ss_pred ccEEEEEeCCC-CChhhHHHHHHHHHHCCCCEEEEcCCCC------------CCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 63 VALIPYITAGD-PDLSTTAEALKLLDSCGSDIIELGVPYS------------DPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 63 ~~li~yi~~G~-P~~~~~~e~~~~L~~~GaD~IElG~Pfs------------DP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+|.=+-... -|++...+.++...++|||+|-++.=.. ....+-... . .-.+.-.+.++..+
T Consensus 19 ~~iIAEig~NH~Gd~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~el~~~~~~~ 94 (280)
T d2zdra2 19 PLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIY-E---IMERCALNEEDEIK 94 (280)
T ss_dssp CEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHH-H---HHHHHCCCHHHHHH
T ss_pred cEEEEEeccccCCCHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccc-c---ccccccccchhhHH
Confidence 34444443333 3678999999999999999999874210 000010011 1 11122345555444
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHH
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMK 209 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~ 209 (311)
+.+..+ +.++++..-.+ + .+.++.+.+.|++.+=++-.-... ..+.+.+.+.+..+++-+.- +..+.+.
T Consensus 95 l~~~~k-~~~i~~~~s~f-d-------~~s~~~~~~~~~~~~KIaS~d~~n-~~Li~~i~k~~kpiiiStG~-s~~~EI~ 163 (280)
T d2zdra2 95 LKEYVE-SKGMIFISTPF-S-------RAAALRLQRMDIPAYKIGSGECNN-YPLIKLVASFGKPIILSTGM-NSIESIK 163 (280)
T ss_dssp HHHHHH-HTTCEEEEEEC-S-------HHHHHHHHHHTCSCEEECGGGTTC-HHHHHHHHTTCSCEEEECTT-CCHHHHH
T ss_pred HHHHHH-hcCCccccccc-h-------hhcccccccccccceeccchhccc-cHhhhhhhhccCceeecccc-cchhHhh
Confidence 444443 35666655433 1 456777888899998887322222 23566677788665444444 4444333
Q ss_pred HHHHh----CCc--eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHH--HHHHHHcCCc
Q 021527 210 AIVEA----SEG--FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEH--VQQVAGWGAD 274 (311)
Q Consensus 210 ~i~~~----a~g--fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~--v~~v~~~GAD 274 (311)
+..+. ... +.+|+|.+. +....--...+..+++..+.+. |||.=++... .......||+
T Consensus 164 ~av~~~~~~~~~~~llhc~s~YP-----t~~~~~nL~~i~~lk~~f~~~~-iG~SdH~~g~~~~~~Ava~GA~ 230 (280)
T d2zdra2 164 KSVEIIREAGVPYALLHCTNIYP-----TPYEDVRLGGMNDLSEAFPDAI-IGLSDHTLDNYACLGAVALGGS 230 (280)
T ss_dssp HHHHHHHHHTCCEEEEECCCCSS-----CCGGGCCTTHHHHHHHHCTTSE-EEEECCSSSSHHHHHHHHTTCC
T ss_pred hhhhhhhhccccceEEEeeccCc-----cccccccccccceeeccccccc-eeecCcccchhhHHHHHHCCCe
Confidence 33332 222 334455443 2222222345888888765443 6776655433 2333456665
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.12 E-value=1.7 Score=38.32 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+.++.+|+.++.|+++ .||.+++++..+.+.|+|+++|...=-+.+
T Consensus 207 ~~i~~l~~~~~~pii~-Kgi~~~~da~~a~~~G~d~i~vsnhggr~~ 252 (349)
T d1tb3a1 207 NDLSLLQSITRLPIIL-KGILTKEDAELAMKHNVQGIVVSNHGGRQL 252 (349)
T ss_dssp HHHHHHHTTCCSCEEE-EEECSHHHHHHHHHTTCSEEEECCGGGTSS
T ss_pred HHHHHHHHhcCCCccc-chhhhhHHHHHHHHhhccceeeeccccccc
Confidence 5688899999999955 577789999999999999999986544444
|
| >d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Protozoan orotidine monophosphate decarboxylase species: Plasmodium berghei [TaxId: 5821]
Probab=80.29 E-value=1.9 Score=38.01 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=37.4
Q ss_pred HHHHHHhhcC-CCcEEE-eeCCCCHHHHHHHH------HcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 240 TLLREIKESS-TKPVAV-GFGISKPEHVQQVA------GWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 240 ~~l~~vk~~~-~~Pv~v-GfGIst~e~v~~v~------~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+.++.+|+.. +.++++ |+|-.. .+.+++. +.|+|-++||=.|.+. .++.+..+++.+-+.+++.
T Consensus 249 ~el~~iR~~~~~~~iL~PGIGaQg-gDq~rv~~~~~a~~~g~~~ivvgR~I~~A----~dp~~aa~~i~~~i~~~~~ 320 (324)
T d2fdsa1 249 EEMKIIRNKFPDSYILSPGIGAQN-GDLYKTLKNGYNKDYEKLLINVGRAITKS----PNPKKSSESYYNQIIQIFK 320 (324)
T ss_dssp HHHHHHHHHSTTCCEEECCC------CHHHHHHHHCCSSGGGEEEEECHHHHTS----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEeCcccCCC-CCHHHHhChhhhhhcCceEEEeChhhccC----CCHHHHHHHHHHHHHHHHH
Confidence 4578888865 677655 555332 3344443 3478899999999863 3455555555555555543
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=80.10 E-value=4.5 Score=29.55 Aligned_cols=57 Identities=28% Similarity=0.263 Sum_probs=42.9
Q ss_pred HHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHH
Q 021527 239 QTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 239 ~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
.++++++|+. .+.|+++=.+-++.+.+.+..+.|||+.+. |.+. +++.+..++++++
T Consensus 59 ~~~~~~lr~~~~~~~ii~it~~~~~~~~~~a~~~Ga~dyl~-----KP~~----~~~L~~~i~~~l~ 116 (120)
T d1p2fa2 59 YEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVT-----KPFN----PEILLARVKRFLE 116 (120)
T ss_dssp HHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEE-----SSCC----HHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCCcEEEEecCCCHHHHHHHHHCCCCEEEE-----CCCC----HHHHHHHHHHHHH
Confidence 4788888875 468999999999999999999999999865 5442 3445555555543
|