Citrus Sinensis ID: 021567
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | 2.2.26 [Sep-21-2011] | |||||||
| Q8YVX4 | 219 | tRNA (guanine-N(7)-)-meth | yes | no | 0.578 | 0.821 | 0.344 | 4e-24 | |
| B0JUK5 | 211 | tRNA (guanine-N(7)-)-meth | yes | no | 0.565 | 0.834 | 0.356 | 4e-24 | |
| Q3M3Q5 | 215 | tRNA (guanine-N(7)-)-meth | yes | no | 0.585 | 0.846 | 0.335 | 9e-23 | |
| Q2JRH1 | 236 | tRNA (guanine-N(7)-)-meth | yes | no | 0.559 | 0.737 | 0.355 | 3e-22 | |
| Q8DHH6 | 213 | tRNA (guanine-N(7)-)-meth | yes | no | 0.627 | 0.915 | 0.344 | 6e-22 | |
| P73161 | 211 | tRNA (guanine-N(7)-)-meth | N/A | no | 0.581 | 0.857 | 0.328 | 9e-22 | |
| Q5N2X5 | 213 | tRNA (guanine-N(7)-)-meth | yes | no | 0.585 | 0.854 | 0.346 | 7e-20 | |
| P72546 | 213 | tRNA (guanine-N(7)-)-meth | yes | no | 0.585 | 0.854 | 0.346 | 7e-20 | |
| Q2JJQ0 | 239 | tRNA (guanine-N(7)-)-meth | yes | no | 0.559 | 0.728 | 0.340 | 2e-19 | |
| Q117P8 | 220 | tRNA (guanine-N(7)-)-meth | yes | no | 0.578 | 0.818 | 0.341 | 2e-19 |
| >sp|Q8YVX4|TRMB_NOSS1 tRNA (guanine-N(7)-)-methyltransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trmB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 23/203 (11%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------ 168
++W AY P QPL +DIG G F+L MA+ + NFLGLE+ R+SL +
Sbjct: 31 LEWEKAYSTPHQPLHLDIGCARGRFVLQMAQVEPNWNFLGLEI----RESLVIEANQFRS 86
Query: 169 --GITNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 225
G+TN +++ NA ++ + +++S P G L V+IQ P+P F + R+VQ LV+ +
Sbjct: 87 QLGLTNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDPWFKTRHAKRRVVQPELVQDI 146
Query: 226 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR 285
++ L G VFLQSD+E V + M +F + K G WL EN V
Sbjct: 147 ANYLAVGGVVFLQSDMEFVAVEMCDRF----------AANPAFKKVGTGEWLTENPLPVA 196
Query: 286 SDWEQHVIDRGAPMYRLMLSKPS 308
++ E +RG P+YR + + S
Sbjct: 197 TERETTTQNRGEPVYRALFERSS 219
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Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3 |
| >sp|B0JUK5|TRMB_MICAN tRNA (guanine-N(7)-)-methyltransferase OS=Microcystis aeruginosa (strain NIES-843) GN=trmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 171
DW+ Y D QPL +DIG G FLL MA+ ++NFLG+E LV + G++
Sbjct: 25 DWNQVYQDMTQPLHLDIGCARGKFLLQMAQVEPEINFLGIEIRQPLVIEANQERERLGLS 84
Query: 172 NGYFIATNATSTFRSIVASYPG-KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
N F+ N ++ S P KL VSIQ P+P F + + R+VQ LV A++ +V
Sbjct: 85 NLAFVFGNMNVAPEILLQSLPADKLFWVSIQFPDPWFKQRHSKRRVVQPELVIALAKYMV 144
Query: 231 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 290
G VFLQSD+E + L M ++F + + +Q WL EN F V ++ E+
Sbjct: 145 AGGWVFLQSDVESIALEMTERFQAHPHF----------VRQHQTPWLEENIFPVPTEREK 194
Query: 291 HVIDRGAPMYR 301
++G P+YR
Sbjct: 195 STYNKGQPVYR 205
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Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q3M3Q5|TRMB_ANAVT tRNA (guanine-N(7)-)-methyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 15/197 (7%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGI 170
++W Y P QPL +DIG G F+L MA+ NFLGLE LV G+
Sbjct: 27 LEWEKVYSSPHQPLHLDIGCARGRFVLQMAQVEPRWNFLGLEIREPLVIEANQFRSQLGL 86
Query: 171 TNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 229
+N +++ NA ++ + +++S P G L V+IQ P+P F + R+VQ LV+ +++ L
Sbjct: 87 SNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDPWFKTRHAKRRVVQPELVQDIANYL 146
Query: 230 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 289
G VFLQSD+E V + M +F + K G WL EN V ++ E
Sbjct: 147 AVGGVVFLQSDMEFVAVEMCDRF----------AANPAFKKVGSGEWLSENPLPVATERE 196
Query: 290 QHVIDRGAPMYRLMLSK 306
+RG P+YR + +
Sbjct: 197 TTTQNRGEPVYRALFER 213
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Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q2JRH1|TRMB_SYNJA tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=trmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 101/197 (51%), Gaps = 23/197 (11%)
Query: 117 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQLSG 169
W Y QPL +DIGSG+G FLL MA+++ D NFLG+E+ RD L G
Sbjct: 55 WERVYRRLGQPLHLDIGSGSGRFLLRMAQEQPDWNFLGVEIRQPLVERANAWRDEL---G 111
Query: 170 ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 229
+ N +F+ N + R + A PG L V+IQ P+P F + H+ R+VQ LV ++ LL
Sbjct: 112 LDNVHFLFANINVSLRHLFA--PGDLSRVTIQFPDPWFKKRHHKRRIVQPRLVADLALLL 169
Query: 230 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 289
VFLQSD+ EV M +FLE+ + G + +N FG+ ++ E
Sbjct: 170 QPGSPVFLQSDVREVAEEMVDRFLEHPQ-----------FWNPYQGPIDDNPFGIPTERE 218
Query: 290 QHVIDRGAPMYRLMLSK 306
+ G P+YR L +
Sbjct: 219 WQCLQLGLPIYRYWLER 235
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Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q8DHH6|TRMB_THEEB tRNA (guanine-N(7)-)-methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=trmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 99 RMLPGVSALDRAFPFDI---DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGL 155
R+ V+ L + F DI DWS Y P+QPL +DIG G FLL MA + NFLGL
Sbjct: 9 RVRQHVNPLSQKFQQDIPVPDWSRIYEQPSQPLHLDIGCARGTFLLEMAALYPEQNFLGL 68
Query: 156 E----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211
E LV + + N +++ NA I+ P L V+IQ P+P F R
Sbjct: 69 EIRYPLVVAANERRDRQQLRNLHYLWGNANVHLSKILGGLP--LHTVTIQFPDPWFKRRH 126
Query: 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKT 271
H+ R+V LV +++LL G+V LQSD+ EV M QQF +G + T T
Sbjct: 127 HKRRVVTPELVATLAELLPAGGRVVLQSDVFEVAESMVQQFRAHGAFR--------STCT 178
Query: 272 NQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306
+ WL ++ + V ++ E+ V+++G +YR +
Sbjct: 179 D---WLPQSPWPVATEREKCVLNKGLAVYRWQFER 210
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Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|P73161|TRMB_SYNY3 tRNA (guanine-N(7)-)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trmB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 171
DW+ Y D +PL +DIG G F L MA++ D NFLG+E LV ++ G+
Sbjct: 25 DWATVYDDVQRPLHLDIGCARGRFPLKMAQQHPDWNFLGVEIRQPLVLEANETGDRLGLK 84
Query: 172 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231
N +++ N +++P L VSIQ P+P F + ++ R+ Q LV A+++ L
Sbjct: 85 NLHYLFGNINVEPEKFFSAFPPTLQRVSIQFPDPWFKQRHNKRRVAQPELVTAIANALPP 144
Query: 232 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQH 291
G+V LQSD+E V M+ +F E V D WL EN GV ++ E
Sbjct: 145 GGEVLLQSDVEPVAQDMRDRFAE--NDNFVFTHD--------TPWLAENPLGVPTEREIA 194
Query: 292 VIDRGAPMYRLMLSK 306
+ P+YR +L +
Sbjct: 195 CFNLQRPVYRCLLQR 209
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Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q5N2X5|TRMB_SYNP6 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 17/199 (8%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 171
DW Y D +PL +DIG G FLL MA + + N+LGLE LV + +T
Sbjct: 25 DWQQVYADCDRPLHLDIGCARGRFLLAMATAQPEWNYLGLEIREPLVDEANAIARERELT 84
Query: 172 NGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
N Y+ +NA ++ S P G L VSIQ P+P F + + R+VQ LV+A++ L
Sbjct: 85 NLYYHFSNANLDLEPLLRSLPTGILQRVSIQFPDPWFKKRHQKRRVVQPELVQALATALP 144
Query: 231 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 290
+VFLQSD+ EV M + F + Q C WL EN V ++ E
Sbjct: 145 AGAEVFLQSDVLEVQAEMCEHFAAEPR-----FQRTC------LDWLPENPLPVPTEREI 193
Query: 291 HVIDRGAPMYR-LMLSKPS 308
V ++ P+YR L + +P+
Sbjct: 194 AVQNKQLPVYRALFIRQPA 212
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Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|P72546|TRMB_SYNE7 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=trmB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 17/199 (8%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 171
DW Y D +PL +DIG G FLL MA + + N+LGLE LV + +T
Sbjct: 25 DWQQVYADCDRPLHLDIGCARGRFLLAMATAQPEWNYLGLEIREPLVDEANAIARERELT 84
Query: 172 NGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
N Y+ +NA ++ S P G L VSIQ P+P F + + R+VQ LV+A++ L
Sbjct: 85 NLYYHFSNANLDLEPLLRSLPTGILQRVSIQFPDPWFKKRHQKRRVVQPELVQALATALP 144
Query: 231 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 290
+VFLQSD+ EV M + F + Q C WL EN V ++ E
Sbjct: 145 AGAEVFLQSDVLEVQAEMCEHFAAEPR-----FQRTC------LDWLPENPLPVPTEREI 193
Query: 291 HVIDRGAPMYR-LMLSKPS 308
V ++ P+YR L + +P+
Sbjct: 194 AVQNKQLPVYRALFIRQPA 212
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Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q2JJQ0|TRMB_SYNJB tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=trmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 117 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQLSG 169
W Y QP +DIG+G+G FLL +A+++ D NFLG+E+ RD L G
Sbjct: 58 WERVYRRLGQPFHLDIGTGSGRFLLRIAQEQPDWNFLGVEIRQALVERANAWRDEL---G 114
Query: 170 ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 229
+ N +F+ N + R + A PG L V+I P+P F + H+ R+VQ LV ++ LL
Sbjct: 115 LDNVHFLFANINVSLRHLFA--PGDLSRVTILFPDPWFKKRHHKRRIVQPQLVADLALLL 172
Query: 230 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 289
VFLQSDI+EV M +FLE+ + +QG L N G+ ++ E
Sbjct: 173 RPGSPVFLQSDIQEVAEEMAARFLEHPQF----------WDPHQGP-LDSNPLGIPTERE 221
Query: 290 QHVIDRGAPMYRLMLSK 306
+ P+YR L +
Sbjct: 222 WQCLQLDLPIYRYWLER 238
|
Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q117P8|TRMB_TRIEI tRNA (guanine-N(7)-)-methyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=trmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 171
++S Y D +PL +DIG G FL MA+ + NFLGLE LV + G+
Sbjct: 25 NFSDIYADIKKPLYLDIGCARGRFLWQMAQVEPEWNFLGLEIREPLVIEANNWRDEKGLN 84
Query: 172 NGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
N +++ NA + I S+P G L VSI P+P F R R+VQ LVE +++ L
Sbjct: 85 NLHYLFCNANISLGKIFESFPKGILKKVSILFPDPWFKRRHQTRRVVQPKLVEDLANYLT 144
Query: 231 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 290
G+VFL SDIE+V M +F +G + WL EN V S+ E+
Sbjct: 145 VGGEVFLHSDIEKVAKEMCNRFSAHG-----------SFYRSYNDWLKENILPVLSEREK 193
Query: 291 HVIDRGAPMYRLMLSK 306
+ + P+YR + K
Sbjct: 194 VTLGKNQPVYRALFIK 209
|
Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Trichodesmium erythraeum (strain IMS101) (taxid: 203124) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | ||||||
| 359481547 | 618 | PREDICTED: phosphoglycerate kinase-like | 0.929 | 0.467 | 0.692 | 1e-117 | |
| 297741637 | 581 | unnamed protein product [Vitis vinifera] | 0.929 | 0.497 | 0.692 | 1e-117 | |
| 255556946 | 678 | phosphoglycerate kinase, putative [Ricin | 0.922 | 0.423 | 0.668 | 1e-114 | |
| 224140203 | 606 | predicted protein [Populus trichocarpa] | 0.938 | 0.481 | 0.652 | 1e-110 | |
| 356551092 | 710 | PREDICTED: phosphoglycerate kinase-like | 0.916 | 0.401 | 0.625 | 1e-107 | |
| 449518274 | 675 | PREDICTED: phosphoglycerate kinase, chlo | 0.922 | 0.425 | 0.611 | 1e-102 | |
| 449440121 | 674 | PREDICTED: phosphoglycerate kinase, chlo | 0.913 | 0.421 | 0.610 | 1e-101 | |
| 78708732 | 673 | methyltransferase family protein, expres | 0.887 | 0.410 | 0.534 | 1e-82 | |
| 222612897 | 1032 | hypothetical protein OsJ_31675 [Oryza sa | 0.903 | 0.272 | 0.529 | 1e-82 | |
| 357140541 | 769 | PREDICTED: phosphoglycerate kinase-like | 0.903 | 0.365 | 0.515 | 3e-82 |
| >gi|359481547|ref|XP_002276911.2| PREDICTED: phosphoglycerate kinase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/293 (69%), Positives = 238/293 (81%), Gaps = 4/293 (1%)
Query: 20 LLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 79
LL + +IW+GPVKFR SQ GASKL ML +++Q C +TVIG+MACKA+ K SS
Sbjct: 323 LLTGCKKIIWIGPVKFRLPSQDIYGASKLVSMLDRLTQSNCEITVIGNMACKAVMKESSF 382
Query: 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 139
+ NMVE+ S VWEFLKGR LPG+ ALDRA+P +IDW+AAY P+QPLVVDIGSGNGLF
Sbjct: 383 VSVYNMVENASVVWEFLKGRKLPGLMALDRAYPVEIDWNAAYSHPSQPLVVDIGSGNGLF 442
Query: 140 LLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 195
LL MA++R+DLNFLGLE LV C D + GI NGYFIATNATSTFRSIV+SYPG L
Sbjct: 443 LLAMAKRREDLNFLGLEINEKLVRRCLDCVHQYGIMNGYFIATNATSTFRSIVSSYPGDL 502
Query: 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL DGKVFLQSDIE V +RMK+ FL+Y
Sbjct: 503 VLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASDGKVFLQSDIEAVAVRMKEHFLKY 562
Query: 256 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308
GKGKL +V +E T+T++ GWL EN FGVRSDWEQHV+DRGAPMYRLMLSK +
Sbjct: 563 GKGKLSVVHNEDCTETDRKGWLKENPFGVRSDWEQHVVDRGAPMYRLMLSKST 615
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741637|emb|CBI32769.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/293 (69%), Positives = 238/293 (81%), Gaps = 4/293 (1%)
Query: 20 LLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 79
LL + +IW+GPVKFR SQ GASKL ML +++Q C +TVIG+MACKA+ K SS
Sbjct: 286 LLTGCKKIIWIGPVKFRLPSQDIYGASKLVSMLDRLTQSNCEITVIGNMACKAVMKESSF 345
Query: 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 139
+ NMVE+ S VWEFLKGR LPG+ ALDRA+P +IDW+AAY P+QPLVVDIGSGNGLF
Sbjct: 346 VSVYNMVENASVVWEFLKGRKLPGLMALDRAYPVEIDWNAAYSHPSQPLVVDIGSGNGLF 405
Query: 140 LLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 195
LL MA++R+DLNFLGLE LV C D + GI NGYFIATNATSTFRSIV+SYPG L
Sbjct: 406 LLAMAKRREDLNFLGLEINEKLVRRCLDCVHQYGIMNGYFIATNATSTFRSIVSSYPGDL 465
Query: 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL DGKVFLQSDIE V +RMK+ FL+Y
Sbjct: 466 VLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASDGKVFLQSDIEAVAVRMKEHFLKY 525
Query: 256 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308
GKGKL +V +E T+T++ GWL EN FGVRSDWEQHV+DRGAPMYRLMLSK +
Sbjct: 526 GKGKLSVVHNEDCTETDRKGWLKENPFGVRSDWEQHVVDRGAPMYRLMLSKST 578
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556946|ref|XP_002519506.1| phosphoglycerate kinase, putative [Ricinus communis] gi|223541369|gb|EEF42920.1| phosphoglycerate kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/293 (66%), Positives = 241/293 (82%), Gaps = 6/293 (2%)
Query: 20 LLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 79
LL++ + +IW+GP KF+FS+ NGASKL +L ++SQ TC+VTV+G++ACKA+ SSS
Sbjct: 385 LLVKSKKIIWIGPPKFKFSNPCINGASKLAQVLDELSQPTCDVTVVGNLACKAVMVESSS 444
Query: 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 139
+ +++E+ S VW+F K R LPGV ALDRA+PF IDWSA YHDPAQPLVVDIG GNG+F
Sbjct: 445 LLAYDLIENASVVWDFFKRRNLPGVMALDRAYPFKIDWSAVYHDPAQPLVVDIGCGNGMF 504
Query: 140 LLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 195
LLGMAR++KDLNFLGLE LV C DS+ SGI+NG+FIATNAT+TFRSIV+SYPG+L
Sbjct: 505 LLGMARRKKDLNFLGLEINKKLVRRCLDSVHQSGISNGHFIATNATTTFRSIVSSYPGEL 564
Query: 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
+LVSIQCPNPDFN PEHRWRM+QRSLVEAV+DLL HDGKVFLQSDI+ V +RMK+ FL+Y
Sbjct: 565 VLVSIQCPNPDFNDPEHRWRMLQRSLVEAVADLLAHDGKVFLQSDIKTVAVRMKELFLKY 624
Query: 256 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308
G+G+L+LV D+ + WL EN FGVRSDWEQHVID+G PMYRLMLSK +
Sbjct: 625 GRGRLMLVNDQFEATIRV--WLEENPFGVRSDWEQHVIDQGRPMYRLMLSKST 675
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140203|ref|XP_002323474.1| predicted protein [Populus trichocarpa] gi|222868104|gb|EEF05235.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/296 (65%), Positives = 234/296 (79%), Gaps = 4/296 (1%)
Query: 20 LLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 79
LL++ + ++W+GPVKF+FS Q ++GASKL L + Q C++TV G+MAC+A+ S S
Sbjct: 311 LLVKCKKILWIGPVKFKFSGQCADGASKLAQALNDLRQRNCDITVAGNMACQAMVMESKS 370
Query: 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 139
+ +M+E+ S +WEF KGR LPGV ALDRA+PF+IDW +AY +PAQPLVVDIGSG+GLF
Sbjct: 371 VLVNDMIENASVLWEFFKGRKLPGVMALDRAYPFEIDWKSAYCNPAQPLVVDIGSGSGLF 430
Query: 140 LLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 195
LLGMAR+RKDLNFLGLE LV C DS+ GI NGYFI TNAT+TFRSIV+SYPG+L
Sbjct: 431 LLGMARRRKDLNFLGLEINSKLVRRCMDSVHQYGIQNGYFIVTNATTTFRSIVSSYPGEL 490
Query: 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
+LVSIQCPNPDFN PEHRWRM+QRSL++AV DLL DGKVFLQSD+E V LRMK+ FL+
Sbjct: 491 VLVSIQCPNPDFNNPEHRWRMLQRSLIKAVVDLLALDGKVFLQSDLEAVALRMKELFLKI 550
Query: 256 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK 311
GKGKL L D+ + N G WL EN FGV SDWEQHVIDRG PMYRLMLSK S ++
Sbjct: 551 GKGKLNLWNDQYHARMNLGEWLEENPFGVMSDWEQHVIDRGDPMYRLMLSKSSGIE 606
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551092|ref|XP_003543912.1| PREDICTED: phosphoglycerate kinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/296 (62%), Positives = 233/296 (78%), Gaps = 11/296 (3%)
Query: 20 LLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 79
+L + +IW+GPVKF SS+Y+ GASKLT +L ++SQ +C +TV+G+MA K + + SS
Sbjct: 420 MLTNCKKIIWIGPVKFTDSSKYTYGASKLTRILEQLSQNSCEITVVGTMASKLVRQEKSS 479
Query: 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 139
+ +NMVE+ S +WEFLKGR LPGV A+DR +PF+I+W++ Y DPAQ LVVDIGSGNGLF
Sbjct: 480 LSLINMVENASVLWEFLKGRKLPGVMAVDRGYPFEINWNSIYSDPAQSLVVDIGSGNGLF 539
Query: 140 LLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 195
LL MAR+++DLNFLGLE LV C DS+ GI NGYFIATNATSTF SIV+SYPG+L
Sbjct: 540 LLEMARRKQDLNFLGLEINEKLVLRCLDSIHQFGIKNGYFIATNATSTFHSIVSSYPGEL 599
Query: 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
+LVSIQCPNPDFN+PEHRWRM+QRSL+EAV DLL +GK+FLQSD+E V +RMK+QF Y
Sbjct: 600 VLVSIQCPNPDFNKPEHRWRMLQRSLIEAVVDLLAPNGKIFLQSDVEAVAIRMKEQFFRY 659
Query: 256 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK 311
GKGKL D + Q WL EN FGVRSDWE+HV++RGAPMYR+M +K S ++
Sbjct: 660 GKGKL-------DLEHGQSEWLEENPFGVRSDWERHVLERGAPMYRMMFTKSSDIR 708
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449518274|ref|XP_004166167.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/296 (61%), Positives = 228/296 (77%), Gaps = 9/296 (3%)
Query: 20 LLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 79
LL+ + +IW+GPVKF SSQ + GAS+L L +SQ C++TV+G+ ACKAI + SS+
Sbjct: 382 LLMNSKKIIWIGPVKFSDSSQSARGASRLARKLYDLSQRDCDITVVGTTACKAIMQESST 441
Query: 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 139
+ N+ E+ S VW+F KG+ LPGV ALDRA+P++I+W A + D A PLVVDIGSGNG+F
Sbjct: 442 LCAYNVFENASVVWDFFKGKQLPGVLALDRAYPYEINWDAVFCDTALPLVVDIGSGNGMF 501
Query: 140 LLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 195
LL MAR+RKD NFLGLE LV C S+ + NG+FIATNATSTFRSIV +YPG+L
Sbjct: 502 LLEMARRRKDHNFLGLEINEKLVKRCLHSVHQLEMKNGHFIATNATSTFRSIVCNYPGEL 561
Query: 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL +GKVFLQSD+E V LRM++ FL Y
Sbjct: 562 VLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASNGKVFLQSDVEAVALRMREAFLLY 621
Query: 256 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK 311
GKGKL ++Q++ + WL EN FGVRSDWE+HV+DRG PM+RLMLSK + K
Sbjct: 622 GKGKLGVLQEQVGEE-----WLSENPFGVRSDWERHVLDRGDPMFRLMLSKSTTTK 672
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440121|ref|XP_004137833.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/293 (61%), Positives = 226/293 (77%), Gaps = 9/293 (3%)
Query: 20 LLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 79
LL+ + +IW+GPVKF SSQ + GAS+L L +SQ C++TV+G+ ACKAI + SS+
Sbjct: 382 LLMNSKKIIWIGPVKFSDSSQSARGASRLARKLYDLSQRDCDITVVGTTACKAIMQESST 441
Query: 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 139
+ N+ E+ S VW+F KG+ LPGV ALDRA+P++I+W A + D PLVVDIGSGNG+F
Sbjct: 442 LCAYNVFENASVVWDFFKGKQLPGVLALDRAYPYEINWDAVFCDTTLPLVVDIGSGNGMF 501
Query: 140 LLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 195
LL MAR+RKD NFLGLE LV C S+ + NG+FIATNATSTFRSIV +YPG+L
Sbjct: 502 LLEMARRRKDHNFLGLEINEKLVKRCLHSVHQLEMKNGHFIATNATSTFRSIVCNYPGEL 561
Query: 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL +GKVFLQSD+E V LRM++ FL Y
Sbjct: 562 VLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASNGKVFLQSDVEAVALRMREAFLLY 621
Query: 256 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308
GKGKL ++Q++ + WL EN FGVRSDWE+HV+DRG PM+RLMLSK +
Sbjct: 622 GKGKLGVLQEQVGEE-----WLSENPFGVRSDWERHVLDRGDPMFRLMLSKST 669
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|78708732|gb|ABB47707.1| methyltransferase family protein, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 204/286 (71%), Gaps = 10/286 (3%)
Query: 25 QNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLN 84
+ V+W+GP F + ++S GA++L +L K S +C+V ++GS ACKA+ +S S
Sbjct: 393 KKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHDSCDVILVGSAACKAVKGISGSSSKYT 452
Query: 85 MVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMA 144
++ S V EFLKG++LPGV+ALD+++P+ I W+A + D +QPLVVDIGSGNGLFL MA
Sbjct: 453 TFKNASVVLEFLKGKILPGVAALDKSYPYQIPWNAIFSDSSQPLVVDIGSGNGLFLFQMA 512
Query: 145 RKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200
R + NFLGLE LV C + N YF++TNATSTFRSIV+SYPG+L LV+I
Sbjct: 513 RDWEGSNFLGLEMNKKLVVRCLRDVASVDKRNLYFVSTNATSTFRSIVSSYPGQLALVTI 572
Query: 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260
QCPNPDFNR ++RWRMV+R LVEA++DLL +GKV+LQSD+E V+LRMK+QF+ +GKG+L
Sbjct: 573 QCPNPDFNREQNRWRMVRRMLVEAIADLLQPNGKVYLQSDVESVLLRMKEQFMTHGKGQL 632
Query: 261 VLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306
V+ D G +N FG SDWE+HV+ RGAPMYR ML K
Sbjct: 633 VVDDD------GGGDHQMDNPFGAASDWERHVLARGAPMYRTMLRK 672
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222612897|gb|EEE51029.1| hypothetical protein OsJ_31675 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/291 (52%), Positives = 206/291 (70%), Gaps = 10/291 (3%)
Query: 20 LLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 79
L+ + V+W+GP F + ++S GA++L +L K S +C+V ++GS ACKA+ +S S
Sbjct: 747 LMPLYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHDSCDVILVGSAACKAVKGISGS 806
Query: 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 139
++ S V EFLKG++LPGV+ALD+++P+ I W+A + D +QPLVVDIGSGNGLF
Sbjct: 807 SSKYTTFKNASVVLEFLKGKILPGVAALDKSYPYQIPWNAIFSDSSQPLVVDIGSGNGLF 866
Query: 140 LLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 195
L MAR + NFLGLE LV C + N YF++TNATSTFRSIV+SYPG+L
Sbjct: 867 LFQMARDWEGSNFLGLEMNKKLVVRCLRDVASVDKRNLYFVSTNATSTFRSIVSSYPGQL 926
Query: 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
LV+IQCPNPDFNR ++RWRMV+R LVEA++DLL +GKV+LQSD+E V+LRMK+QF+ +
Sbjct: 927 ALVTIQCPNPDFNREQNRWRMVRRMLVEAIADLLQPNGKVYLQSDVESVLLRMKEQFMTH 986
Query: 256 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306
GKG+LV+ D G +N FG SDWE+HV+ RGAPMYR ML K
Sbjct: 987 GKGQLVVDDD------GGGDHQMDNPFGAASDWERHVLARGAPMYRTMLRK 1031
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357140541|ref|XP_003571824.1| PREDICTED: phosphoglycerate kinase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/291 (51%), Positives = 206/291 (70%), Gaps = 10/291 (3%)
Query: 20 LLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 79
L+ + ++W+GP + + + S G ++L +L K SQ +C+V ++GS ACKA+ +S
Sbjct: 484 LMPSYKKILWIGPTSYDLTKEISVGEAQLGQILDKASQNSCDVILVGSAACKAVKGISDF 543
Query: 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 139
+ E+GS VWEFLKGR+LPG++ALD+++P+ I W+ + DP PL VDIGSGNGLF
Sbjct: 544 SSQYSAFENGSIVWEFLKGRILPGIAALDKSYPYQIPWTDVFSDPEHPLFVDIGSGNGLF 603
Query: 140 LLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 195
L M+R + NFLGLE LVT C L + N +F++TNATSTFRSI++SYPG+L
Sbjct: 604 LFQMSRNWEGSNFLGLEMNEKLVTRCLQDLASAEKRNLHFVSTNATSTFRSIISSYPGEL 663
Query: 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
+V+IQCPNPDFN+ ++RWRMV+R LVEAV+DLL +GK+FLQSD+E V+L MK+QF+ +
Sbjct: 664 TMVTIQCPNPDFNKEQNRWRMVRRMLVEAVADLLQINGKIFLQSDVESVLLGMKEQFISH 723
Query: 256 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306
GKG+LV+ +D+ G EN FGV SDWE HV+ RG PMYR ML K
Sbjct: 724 GKGRLVVDRDD------GGHGRMENPFGVASDWEGHVLARGDPMYRTMLRK 768
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | ||||||
| TAIR|locus:2175971 | 312 | AT5G17660 [Arabidopsis thalian | 0.639 | 0.637 | 0.380 | 6.9e-31 | |
| TIGR_CMR|VC_0453 | 239 | VC_0453 "tRNA (guanine-N(7)-)- | 0.401 | 0.523 | 0.278 | 1.8e-06 | |
| UNIPROTKB|Q8EBX8 | 238 | trmB "tRNA (guanine-N(7)-)-met | 0.463 | 0.605 | 0.278 | 9.2e-06 | |
| TIGR_CMR|SO_3367 | 238 | SO_3367 "conserved hypothetica | 0.463 | 0.605 | 0.278 | 9.2e-06 | |
| UNIPROTKB|Q74FT5 | 209 | trmB "tRNA (guanine-N(7)-)-met | 0.398 | 0.593 | 0.270 | 6.7e-05 | |
| TIGR_CMR|GSU_0521 | 209 | GSU_0521 "methyltransferase, p | 0.398 | 0.593 | 0.270 | 6.7e-05 | |
| UNIPROTKB|Q28H76 | 273 | mettl1-A "tRNA (guanine-N(7)-) | 0.463 | 0.527 | 0.262 | 7.7e-05 | |
| UNIPROTKB|Q6NU94 | 273 | mettl1 "tRNA (guanine-N(7)-)-m | 0.463 | 0.527 | 0.262 | 8.4e-05 | |
| MGI|MGI:1339986 | 268 | Mettl1 "methyltransferase like | 0.430 | 0.5 | 0.274 | 9.8e-05 | |
| FB|FBgn0025629 | 256 | CG4045 [Drosophila melanogaste | 0.434 | 0.527 | 0.243 | 0.0001 |
| TAIR|locus:2175971 AT5G17660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 80/210 (38%), Positives = 115/210 (54%)
Query: 102 PGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLE---- 156
P S+ + P + W Y DP+ PL+VDIGSG+G FLL A K + N+LGLE
Sbjct: 102 PLSSSFSKPAPVPV-WDEVYKDPSLPLMVDIGSGSGRFLLWQANKNVESRNYLGLEIRQK 160
Query: 157 LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRM 216
LV + G++N +FI NA +F +++SYPG L +VSI CP+P F + + R+
Sbjct: 161 LVKRANFWVNELGLSNVHFIFANAMVSFEHLISSYPGPLEIVSILCPDPHFKKRHQKRRV 220
Query: 217 VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW 276
VQ+ LV ++ L GK+F+QSD+ +V M+ Q E V DT + GW
Sbjct: 221 VQKPLVNSILQNLKPGGKIFVQSDVLDVAQDMRDQLDEESN-----VLQHMDTVDTEDGW 275
Query: 277 LGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306
L EN G+R++ E H GA +YR + K
Sbjct: 276 LTENPMGIRTEREIHAEFEGARIYRRLYQK 305
|
|
| TIGR_CMR|VC_0453 VC_0453 "tRNA (guanine-N(7)-)-methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 37/133 (27%), Positives = 65/133 (48%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 170
+DW + + P+V++IG G G L+ MA+ + NFLG+E+ V C S + +G+
Sbjct: 53 LDWQQVFGND-NPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHSPGVGACLASAREAGV 111
Query: 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD-LL 229
TN + +A F ++ L + + P+P + H+ R+VQ E V L+
Sbjct: 112 TNLRVMCHDAVEVFAHMIPD--NSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLM 169
Query: 230 VHDGKVFLQSDIE 242
+ G + +D E
Sbjct: 170 IGSGVFHMATDWE 182
|
|
| UNIPROTKB|Q8EBX8 trmB "tRNA (guanine-N(7)-)-methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 44/158 (27%), Positives = 72/158 (45%)
Query: 97 KGRMLPG-VSALDRAFP-FDIDWSAAYHDPAQPL------VVDIGSGNGLFLLGMARKRK 148
+GR+ G A++ +P +D+S A D A V++IG G G L+ MA++
Sbjct: 26 EGRLTKGQAQAIETQWPTMGLDYSPAPLDLADVFGRKADTVLEIGFGMGASLVQMAQEAP 85
Query: 149 DLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204
+LNF+G+E+ V C +G+TN +A +A G L V + P+
Sbjct: 86 ELNFIGIEVHKPGVGSCLSDAAAAGVTNLRVYHHDAMEVLEHAIAD--GSLTRVQLFFPD 143
Query: 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242
P + H+ R+VQ E + L G + +D E
Sbjct: 144 PWHKKRHHKRRIVQAEFAELIRRKLKIGGVFHMATDWE 181
|
|
| TIGR_CMR|SO_3367 SO_3367 "conserved hypothetical protein TIGR00091" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 44/158 (27%), Positives = 72/158 (45%)
Query: 97 KGRMLPG-VSALDRAFP-FDIDWSAAYHDPAQPL------VVDIGSGNGLFLLGMARKRK 148
+GR+ G A++ +P +D+S A D A V++IG G G L+ MA++
Sbjct: 26 EGRLTKGQAQAIETQWPTMGLDYSPAPLDLADVFGRKADTVLEIGFGMGASLVQMAQEAP 85
Query: 149 DLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204
+LNF+G+E+ V C +G+TN +A +A G L V + P+
Sbjct: 86 ELNFIGIEVHKPGVGSCLSDAAAAGVTNLRVYHHDAMEVLEHAIAD--GSLTRVQLFFPD 143
Query: 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242
P + H+ R+VQ E + L G + +D E
Sbjct: 144 PWHKKRHHKRRIVQAEFAELIRRKLKIGGVFHMATDWE 181
|
|
| UNIPROTKB|Q74FT5 trmB "tRNA (guanine-N(7)-)-methyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 36/133 (27%), Positives = 58/133 (43%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH-CRDS---LQLSGIT 171
DW+A + + PL ++IG G G F+ A NF+ ++ C + L+ GIT
Sbjct: 23 DWTAVFGND-NPLALEIGCGIGDFIARTALDHPTTNFIAIDYYNKGCLKTCSRLERHGIT 81
Query: 172 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWR-MVQRSLVEAVSDLLV 230
N + A + G L V I CP+P + + HR R +V V + D L
Sbjct: 82 NVRVVRAEARQFIVERIQK--GSLAAVYINCPDP-WPKKRHRKRRLVNTQFVRFIRDYLA 138
Query: 231 HDGKVFLQSDIEE 243
G + +D ++
Sbjct: 139 PGGDFYFATDFDD 151
|
|
| TIGR_CMR|GSU_0521 GSU_0521 "methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 36/133 (27%), Positives = 58/133 (43%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH-CRDS---LQLSGIT 171
DW+A + + PL ++IG G G F+ A NF+ ++ C + L+ GIT
Sbjct: 23 DWTAVFGND-NPLALEIGCGIGDFIARTALDHPTTNFIAIDYYNKGCLKTCSRLERHGIT 81
Query: 172 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWR-MVQRSLVEAVSDLLV 230
N + A + G L V I CP+P + + HR R +V V + D L
Sbjct: 82 NVRVVRAEARQFIVERIQK--GSLAAVYINCPDP-WPKKRHRKRRLVNTQFVRFIRDYLA 138
Query: 231 HDGKVFLQSDIEE 243
G + +D ++
Sbjct: 139 PGGDFYFATDFDD 151
|
|
| UNIPROTKB|Q28H76 mettl1-A "tRNA (guanine-N(7)-)-methyltransferase A" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 111 (44.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 42/160 (26%), Positives = 73/160 (45%)
Query: 131 DIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ--LSGITNGYFIATNATSTFRSIV 188
DIG G G L+ ++ + LGLE+ D +Q + + + + RS
Sbjct: 84 DIGCGYGGLLVELSPLFPNTLMLGLEIRVKVSDYVQDRIKSLRASHLGQYQNIACIRSNA 143
Query: 189 ASY-P-----GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242
Y P G+L + P+P F + +H+WR++ +L+ + +L G V+ +D+E
Sbjct: 144 MKYIPNFFKKGQLSKMFFLFPDPHFKKTKHKWRIISPTLLAEYAYVLRIGGMVYTITDVE 203
Query: 243 EVMLRMKQQFLEY------GKGKLV--LVQDECDTKTNQG 274
EV M + F E+ K +LV +V + T T +G
Sbjct: 204 EVHTWMVKHFTEHPLFERVAKEELVNDIVVGKLGTSTEEG 243
|
|
| UNIPROTKB|Q6NU94 mettl1 "tRNA (guanine-N(7)-)-methyltransferase" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 42/160 (26%), Positives = 73/160 (45%)
Query: 131 DIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ--LSGITNGYFIATNATSTFRSIV 188
D+G G G L+ ++ + LGLE+ D +Q + + + + RS
Sbjct: 84 DVGCGYGGLLVALSPLFPNTLMLGLEIRVKVSDYVQDRIKSLRASHLGQYQNIACIRSNA 143
Query: 189 ASY-P-----GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242
Y P G+L + P+P F + +H+WR++ +L+ S L G V+ +D+E
Sbjct: 144 MKYLPNFFKKGQLSKMFFLFPDPHFKKTKHKWRIISPTLLAEYSYALRVGGMVYTITDVE 203
Query: 243 EVMLRMKQQFLEYG------KGKLV--LVQDECDTKTNQG 274
EV M + F E+ K +LV ++ D+ T T +G
Sbjct: 204 EVHEWMVKHFTEHPLFERVEKEELVSDIIVDKLGTSTEEG 243
|
|
| MGI|MGI:1339986 Mettl1 "methyltransferase like 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 39/142 (27%), Positives = 65/142 (45%)
Query: 122 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-----LSGITNGYF- 175
H AQ DIG G G L+ ++ D LGLE+ D +Q L G F
Sbjct: 67 HSGAQVEFADIGCGYGGLLVALSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPGGGFQ 126
Query: 176 -IATNATSTFRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 233
IA ++ + + + G+L + P+P F R +H+WR++ +L+ + +L G
Sbjct: 127 NIACLRSNAMKHLPNFFRKGQLAKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGG 186
Query: 234 KVFLQSDIEEVMLRMKQQFLEY 255
V+ +D+ E+ M F E+
Sbjct: 187 LVYTVTDVPELHEWMCTHFEEH 208
|
|
| FB|FBgn0025629 CG4045 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 0.00010, P = 0.00010
Identities = 36/148 (24%), Positives = 71/148 (47%)
Query: 110 AFPFDIDWSAAY---HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL- 165
A P D+DW + Y Q DIG G G FL+ + + +G+E+ D +
Sbjct: 53 ARPEDVDWRSMYPGIQQGQQVSFADIGCGYGGFLVTLGEMFPEKLSIGMEIRVKVSDYVV 112
Query: 166 -QLSGI------TNGYF-IATNATSTFRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRM 216
+++ + T Y IA T+ + + + G+L + P+P F R +H+WR+
Sbjct: 113 DRIAALRRRCADTGAYQNIACLRTNAMKYLPNYFVKGQLEKMFFLYPDPHFKRAKHKWRI 172
Query: 217 VQRSLVEAVSDLLVHDGKVFLQSDIEEV 244
+ ++L+ + +L G ++ +D+E++
Sbjct: 173 INQALLSEYAYILRKGGLLYTMTDVEDL 200
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
| 3rd Layer | 2.1.1.33 | 0.737 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 311 | |||
| PRK00121 | 202 | PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe | 1e-20 | |
| pfam02390 | 198 | pfam02390, Methyltransf_4, Putative methyltransfer | 1e-20 | |
| COG0220 | 227 | COG0220, COG0220, Predicted S-adenosylmethionine-d | 1e-18 | |
| TIGR00091 | 194 | TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt | 1e-15 | |
| PLN03034 | 481 | PLN03034, PLN03034, phosphoglycerate kinase; Provi | 2e-05 |
| >gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 1e-20
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 107 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCR 162
R P +DW+ + + A P+ ++IG G G FL+ MA+ D+NF+G+E V
Sbjct: 23 WPRLSPAPLDWAELFGNDA-PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL 81
Query: 163 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 222
++ G+TN + +A + G L + + P+P + H+ R+VQ +
Sbjct: 82 KKIEEEGLTNLRLLCGDAVEVLLDMFP--DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFL 139
Query: 223 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256
+ L G++ +D E M + G
Sbjct: 140 ALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEG 173
|
Length = 202 |
| >gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-20
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 21/202 (10%)
Query: 113 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSL-QL 167
F +DW A + + QPL ++IG G G FL+ MA+K D F+G+E V + L
Sbjct: 9 FTLDWQALFGNE-QPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIAL 67
Query: 168 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 227
G+ N + +A ++ G L + I P+P + H+ R++Q ++ +
Sbjct: 68 RGLQNLRILCGDAMKLLPNLFP--DGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYAR 125
Query: 228 LLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN---SFGV 284
+L G + L +D+EE M + E+ + +L + L E+ +
Sbjct: 126 VLKPGGVLHLATDVEEYFEWMLEHLSEHPLFERIL----------ESTDLNEDPITDLRI 175
Query: 285 RSDWEQHVIDRGAPMYRLMLSK 306
+++EQ V G P++ L+ K
Sbjct: 176 STEYEQKVQRLGGPIFELIFIK 197
|
This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. Length = 198 |
| >gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-18
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 19/202 (9%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 170
DWSA + + P+V++IG G G FL+ MA+K + NFLG+E+ V ++ G+
Sbjct: 38 GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL 97
Query: 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
N + +A ++ G L + I P+P + H+ R+ Q ++ + L
Sbjct: 98 KNLRLLCGDAVEVLDYLIP--DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLK 155
Query: 231 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE---CDTKTNQGGWLGENSFGVRSD 287
G + +D EE M + LE+ +D N E F
Sbjct: 156 PGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKF----- 210
Query: 288 WEQHVIDRGAPMYRLMLSKPSC 309
G P+Y L K
Sbjct: 211 -----RRLGHPVYDLEFIKKKG 227
|
Length = 227 |
| >gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-15
Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 20/198 (10%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGIT 171
D++ + PL ++IG G G FL+ MA++ D NFLG+E+ V + G+
Sbjct: 8 DFATVF-GNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK 66
Query: 172 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231
N + + +A G L V + P+P + ++ R+ Q ++ +++L
Sbjct: 67 NLHVLCGDANELLDKFFPD--GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKK 124
Query: 232 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR---SDW 288
G + ++D E + M + E T++ L + +++
Sbjct: 125 GGVIHFKTDNEPLFEDMLKVLSEND----------LFENTSKSTDLNNSPLSRPRNMTEY 174
Query: 289 EQHVIDRGAPMYRLMLSK 306
EQ G P++ L +
Sbjct: 175 EQRFERLGHPVFDLCFER 192
|
This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194 |
| >gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 25 QNVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGL 83
Q VIW GP+ F F +++ G + L ++S + G + A+ KV +
Sbjct: 391 QTVIWNGPMGVFEFE-KFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVMS 449
Query: 84 NMVESGSAVWEFLKGRMLPGVSALDRAFP 112
++ G A E L+G+ LPGV ALD A P
Sbjct: 450 HISTGGGASLELLEGKELPGVVALDEATP 478
|
Length = 481 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 100.0 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 100.0 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 100.0 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.98 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.97 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.93 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.79 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 99.79 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.75 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.69 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.63 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.61 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.56 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.55 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.52 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.51 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.51 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.51 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.51 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.47 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.47 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.45 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.44 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.43 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.42 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.42 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.42 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.41 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.4 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.4 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.4 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.39 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.38 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.38 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.38 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.38 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.38 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.38 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.36 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.35 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.34 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.34 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.32 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.32 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.32 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.32 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.32 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.31 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.31 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.3 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.3 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.29 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.29 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.29 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.29 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.29 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.29 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.28 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.28 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.28 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.27 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.26 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.26 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.25 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.24 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.24 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.23 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.23 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.23 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.21 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.21 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.2 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.2 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.2 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.2 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.19 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.19 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.19 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.19 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.18 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.18 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.18 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.18 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.18 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.14 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.14 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.14 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.14 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.13 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.13 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.13 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.11 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.11 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.1 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.1 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.1 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.09 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.08 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.08 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.08 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.07 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.06 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.06 | |
| PLN02366 | 308 | spermidine synthase | 99.06 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.05 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.05 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.04 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.03 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.03 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.03 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.02 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.01 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.01 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.0 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.0 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.0 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.99 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.98 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.95 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.95 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.93 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.93 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.93 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.92 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.92 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.92 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.92 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.92 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.91 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.9 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.89 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.86 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.85 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.85 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.84 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.84 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.84 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.84 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.84 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.8 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.8 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.79 | |
| PLN02476 | 278 | O-methyltransferase | 98.77 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.74 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.73 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.72 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.72 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.69 | |
| PLN02823 | 336 | spermine synthase | 98.68 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.64 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.64 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.64 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.64 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.63 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.62 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.6 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.57 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.56 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.53 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.47 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.45 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.43 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.43 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.43 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.43 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.4 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.38 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.37 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.36 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.35 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.34 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.32 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.32 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.31 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.29 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.29 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.28 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.27 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.24 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.24 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.24 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.17 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.14 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.13 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.12 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.11 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.11 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.1 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.08 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.06 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.06 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.06 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.02 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.0 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.0 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.99 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.97 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.97 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.95 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.9 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.89 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.88 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.87 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.79 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.79 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.75 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.75 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.74 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.73 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.7 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.68 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.66 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.64 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.62 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.61 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.6 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.58 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.53 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.43 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.43 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.42 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.41 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.39 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.32 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.28 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.14 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.1 | |
| PLN03034 | 481 | phosphoglycerate kinase; Provisional | 97.1 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.05 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.05 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.05 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.02 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.02 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.99 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.98 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.75 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.66 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.65 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.62 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.55 | |
| PLN02282 | 401 | phosphoglycerate kinase | 96.44 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.38 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.11 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.0 | |
| PTZ00005 | 417 | phosphoglycerate kinase; Provisional | 95.99 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 95.92 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 95.84 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.73 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.62 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.58 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.54 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 95.52 | |
| cd00318 | 397 | Phosphoglycerate_kinase Phosphoglycerate kinase (P | 95.5 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.43 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.3 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 95.28 | |
| PRK00073 | 389 | pgk phosphoglycerate kinase; Provisional | 95.28 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.16 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.02 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 94.88 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.79 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.41 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.38 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 94.19 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.03 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.02 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.98 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 93.89 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.87 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 93.72 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 93.64 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 93.59 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.42 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.41 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 93.3 | |
| PF00162 | 384 | PGK: Phosphoglycerate kinase; InterPro: IPR001576 | 93.3 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 93.01 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 92.94 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 92.54 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 92.1 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 91.93 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 91.88 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 91.29 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 91.2 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 90.83 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 90.45 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 90.42 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 90.11 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 89.82 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 89.39 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 89.12 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 89.07 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 88.27 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.15 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 86.73 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 86.58 | |
| PRK13962 | 645 | bifunctional phosphoglycerate kinase/triosephospha | 86.55 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 86.33 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 85.99 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 85.8 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 85.63 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 84.69 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 84.41 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 83.4 | |
| COG4121 | 252 | Uncharacterized conserved protein [Function unknow | 83.39 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 82.91 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 82.78 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 82.76 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 81.86 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 81.67 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 80.97 |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=283.36 Aligned_cols=184 Identities=26% Similarity=0.527 Sum_probs=148.9
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHHcCCCcEEEEEccccchhhhhhc
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
.++|.+.|++ ..+++||||||.|.+++.+|+++|+.+++|||+ +..+.+++...+++|+.++++||..++..++
T Consensus 7 ~~~~~~~f~~-~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~- 84 (195)
T PF02390_consen 7 PLDWQEIFGN-DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF- 84 (195)
T ss_dssp TTCHHHHHTS-CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS-
T ss_pred ccCHHHHcCC-CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc-
Confidence 5789999998 578999999999999999999999999999997 3567777778899999999999999887766
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhc-CCCceeeeccccc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY-GKGKLVLVQDECD 268 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~-g~~~~~~~~d~y~ 268 (311)
+++++|.|+++|||||||++|+|||++++.|++.++++|+|||.|+++||+.+|+++|++.+.+. +.+......+.+
T Consensus 85 -~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~~~~~~- 162 (195)
T PF02390_consen 85 -PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIEESDDL- 162 (195)
T ss_dssp -TTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-TESSG-
T ss_pred -cCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcccCccc-
Confidence 57999999999999999999999999999999999999999999999999999999999999994 544322111111
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeC
Q 021567 269 TKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP 307 (311)
Q Consensus 269 ~~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~ 307 (311)
+.. ...+..+.|+||++++++|++||+++|+|+
T Consensus 163 ---~~~---~~~~~~~~T~yE~k~~~~G~~i~~~~f~k~ 195 (195)
T PF02390_consen 163 ---HES---PFDDDYIPTKYERKWLAEGKPIYRLIFKKV 195 (195)
T ss_dssp ---GCS---CCCTTCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred ---ccC---CCCCCCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence 111 111258899999999999999999999985
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=286.25 Aligned_cols=186 Identities=26% Similarity=0.379 Sum_probs=160.3
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHHcCCCcEEEEEccccchhhhhhc
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
..+|.+.|+++..+++||||||.|.+++.+|+++|+.+|+|||+ +..|++++.+.+++|+.+++.||..+++.++
T Consensus 37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~- 115 (227)
T COG0220 37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI- 115 (227)
T ss_pred cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC-
Confidence 46799999985568999999999999999999999999999996 5788899999999999999999999987655
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeecccccc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT 269 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~ 269 (311)
+++++|.|+++|||||||++|+|||++++.|++.++++|+|||.|+++||++.|++++.....++..+....+.+.+
T Consensus 116 -~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~-- 192 (227)
T COG0220 116 -PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLH-- 192 (227)
T ss_pred -CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccc--
Confidence 57799999999999999999999999999999999999999999999999999999966666666444433433321
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 021567 270 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308 (311)
Q Consensus 270 ~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~ 308 (311)
. +......++.|+||+++.++|++||++.+++..
T Consensus 193 ---~--~~~~~~~~~~T~yE~k~~~~g~~i~~l~~~~~~ 226 (227)
T COG0220 193 ---Y--NLPPPDNNPVTEYEQKFRRLGHPVYDLEFIKKK 226 (227)
T ss_pred ---c--ccccccCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence 1 223344578999999999999999999999865
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=245.83 Aligned_cols=180 Identities=23% Similarity=0.400 Sum_probs=150.7
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhc
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
..+|.+.|++ ..+++||||||+|.++..+|+++|+.+++|+|++..+ .+++...+++|++++++|+.++....+
T Consensus 6 ~~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~- 83 (194)
T TIGR00091 6 KPDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF- 83 (194)
T ss_pred CCCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-
Confidence 4578888986 5789999999999999999999999999999986544 444555678899999999998754333
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC-ceeeeccccc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG-KLVLVQDECD 268 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~-~~~~~~d~y~ 268 (311)
+++++|.|+++|||||++++|+++|++.+.++++++++|||||.|++.||+..|++++++.+.+++.+ ......|
T Consensus 84 -~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~--- 159 (194)
T TIGR00091 84 -PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTD--- 159 (194)
T ss_pred -CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecccccc---
Confidence 46799999999999999999999999999999999999999999999999999999999999998733 2221111
Q ss_pred cccCCCCCCCCCCC---CCCCHHHHHHHHcCCCeEEEEEEeC
Q 021567 269 TKTNQGGWLGENSF---GVRSDWEQHVIDRGAPMYRLMLSKP 307 (311)
Q Consensus 269 ~~~~~~~~~~~~~~---~~~T~yE~~~~~~G~~i~~~~~~k~ 307 (311)
....+. .+.|+||++++++|++||+++++|.
T Consensus 160 --------~~~~~~~~~~~~T~~E~~~~~~g~~i~~~~~~~~ 193 (194)
T TIGR00091 160 --------LNNSPLSRPRNMTEYEQRFERLGHPVFDLCFERL 193 (194)
T ss_pred --------cCCCcccccCcCCHHHHHHHHCCCCeEEEEEEEC
Confidence 122232 3469999999999999999999985
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=254.88 Aligned_cols=172 Identities=19% Similarity=0.295 Sum_probs=147.0
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhccCCC
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
.+.+....++++||||||+|.+++.+|+++|+.+++|+|++ +.+.+++..++++|+.++++|+..++. .+ +++
T Consensus 115 ~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-~~--~~~ 191 (390)
T PRK14121 115 LDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-LL--PSN 191 (390)
T ss_pred HHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-hC--CCC
Confidence 34444446789999999999999999999999999999974 456667777789999999999988743 34 589
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCC
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQ 273 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~ 273 (311)
++|.|+++|||||+|++| ||++++.++++++|+|+|||.+.+.||+.+|+++|.+.+.+.+......
T Consensus 192 s~D~I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~----------- 258 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEI----------- 258 (390)
T ss_pred ceeEEEEeCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeec-----------
Confidence 999999999999999988 7999999999999999999999999999999999999998876543211
Q ss_pred CCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 021567 274 GGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308 (311)
Q Consensus 274 ~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~ 308 (311)
...++..+.|+||++|+++|++||++++++..
T Consensus 259 ---~~~~~~~i~TkyE~r~~~~G~~Iy~l~~~~~~ 290 (390)
T PRK14121 259 ---KKNAQLEVSSKYEDRWKKQNKDIYDLRIYNLE 290 (390)
T ss_pred ---ccCCCCCCCCHHHHHHHHCCCCEEEEEEEeCC
Confidence 12345578999999999999999999999864
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=260.50 Aligned_cols=179 Identities=18% Similarity=0.272 Sum_probs=147.6
Q ss_pred cCCCch-hhhhhCC-CchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHHcCCCcE
Q 021567 100 MLPGVS-ALDRAFP-FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNG 173 (311)
Q Consensus 100 ~~~~~~-~l~~~~~-~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~~~~~Nv 173 (311)
++.++. .++..+| ..+++...|+. .++++||||||.|.++..+|+++|+.+|+|+|+ ..++++++.+.+++|+
T Consensus 321 ~~~~q~~~~e~~~p~~~i~~eklf~~-~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~ 399 (506)
T PRK01544 321 LSGVQQNLLDNELPKYLFSKEKLVNE-KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNF 399 (506)
T ss_pred CCHHHHHHHHhhhhhhCCCHHHhCCC-CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeE
Confidence 444553 3455555 34567777765 689999999999999999999999999999996 3567777777889999
Q ss_pred EEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHH
Q 021567 174 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL 253 (311)
Q Consensus 174 ~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~ 253 (311)
.+++.|+..+ ...+ +++++|.|+++|||||||++|+|||++++.|++.++++|+|||.++++||+.+|+++|++.+.
T Consensus 400 ~~~~~~~~~~-~~~~--~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~ 476 (506)
T PRK01544 400 LLFPNNLDLI-LNDL--PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQ 476 (506)
T ss_pred EEEcCCHHHH-HHhc--CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 9999998765 3445 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 021567 254 EYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHV 292 (311)
Q Consensus 254 ~~g~~~~~~~~d~y~~~~~~~~~~~~~~~~~~T~yE~~~ 292 (311)
+++.+.. ... +.++...+..+.|+||+|.
T Consensus 477 ~~~~f~~-~~~---------~~~~~~~~~~~~T~yE~k~ 505 (506)
T PRK01544 477 QNGNFEI-INK---------NDYLKPHDNYVITKYHQKA 505 (506)
T ss_pred hCCCeEe-ccc---------ccccCCCCCCCCchhccCc
Confidence 9874432 111 2233345678899999975
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=194.30 Aligned_cols=169 Identities=21% Similarity=0.369 Sum_probs=143.0
Q ss_pred CchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccc-cchhhhh
Q 021567 113 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNA-TSTFRSI 187 (311)
Q Consensus 113 ~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da-~~ll~~~ 187 (311)
...+|...|.+ ++.+|||||||+|.++..+|+..|+.+++|+|+++.+++.+ +..+.+|+.++++|+ ..+ +..
T Consensus 29 ~~~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l-~~~ 106 (202)
T PRK00121 29 APLDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL-LDM 106 (202)
T ss_pred CCCCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH-HHH
Confidence 46789999988 68899999999999999999999999999999876655554 345678999999999 544 322
Q ss_pred hccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeecccc
Q 021567 188 VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEC 267 (311)
Q Consensus 188 ~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y 267 (311)
+ ++++||.|+++||+||.+..|++++...+.++++++++|||||.|++.+++..+..++.+.+++.|+... +
T Consensus 107 ~--~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~-~----- 178 (202)
T PRK00121 107 F--PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV-S----- 178 (202)
T ss_pred c--CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc-c-----
Confidence 3 5789999999999999888888887777899999999999999999999999999999999999997532 2
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHc
Q 021567 268 DTKTNQGGWLGENSFGVRSDWEQHVIDR 295 (311)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~T~yE~~~~~~ 295 (311)
.+.+|...++..+.|+||++|+.+
T Consensus 179 ----~~~~~~~~~~~~~~~~~~~~~~~~ 202 (202)
T PRK00121 179 ----EAGDYVPRPEGRPMTEYERKGLRK 202 (202)
T ss_pred ----cchhhcccCccCCCcHHHHHhhcC
Confidence 124577788999999999999753
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-19 Score=160.47 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=106.9
Q ss_pred hhhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhc----CCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEE
Q 021567 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAY----HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGL 155 (311)
Q Consensus 80 ~~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f----~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGi 155 (311)
..+...|++.+..||.++.-++.+. ...|.+.. ...++.+|||+|||||.+++.+++..+..+++|+
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~g~---------~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~ 81 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSFGL---------HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGL 81 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccCcc---------hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEE
Confidence 4677889999999999998888876 12232221 1114789999999999999999999889999999
Q ss_pred chHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccC
Q 021567 156 ELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231 (311)
Q Consensus 156 Di~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkp 231 (311)
|++..+++.+ ...+..+++|+++||+++ |++|++||.|++.|.--++.+ .+..|+|++|||||
T Consensus 82 D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L-----Pf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKp 148 (238)
T COG2226 82 DISESMLEVAREKLKKKGVQNVEFVVGDAENL-----PFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKP 148 (238)
T ss_pred ECCHHHHHHHHHHhhccCccceEEEEechhhC-----CCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcC
Confidence 9876555544 445666799999999998 678999999998864222111 15899999999999
Q ss_pred CeEEEEE
Q 021567 232 DGKVFLQ 238 (311)
Q Consensus 232 GG~l~~~ 238 (311)
||++.+.
T Consensus 149 gG~~~vl 155 (238)
T COG2226 149 GGRLLVL 155 (238)
T ss_pred CeEEEEE
Confidence 9988763
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-19 Score=156.49 Aligned_cols=184 Identities=21% Similarity=0.335 Sum_probs=144.9
Q ss_pred CchhhHhhcCCC-----CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHH-------cCCCcEEEE
Q 021567 113 FDIDWSAAYHDP-----AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQL-------SGITNGYFI 176 (311)
Q Consensus 113 ~~~~~~~~f~~~-----~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~-------~~~~Nv~f~ 176 (311)
...||+..|+.- ...-+.|||||-|.+++.|+..+|+..++|+|| ++...+++++ ....|+.++
T Consensus 43 ~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vl 122 (249)
T KOG3115|consen 43 QEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVL 122 (249)
T ss_pred HhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceee
Confidence 467899887541 236799999999999999999999999999996 3333333322 236899999
Q ss_pred EccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 177 ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 177 ~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
+.++..+++.+| ..+.++-+++.||||++|.+.|++|++...++.+++-+|++||.++..||+.+..+||.+.+++++
T Consensus 123 r~namk~lpn~f--~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 123 RTNAMKFLPNFF--EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred eccchhhccchh--hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 999999988877 588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccccccccCCCCCCCCCCC----CCCCHHHHHHHHcCCCeEEEEEEeCCC
Q 021567 257 KGKLVLVQDECDTKTNQGGWLGENSF----GVRSDWEQHVIDRGAPMYRLMLSKPSC 309 (311)
Q Consensus 257 ~~~~~~~~d~y~~~~~~~~~~~~~~~----~~~T~yE~~~~~~G~~i~~~~~~k~~~ 309 (311)
.+.....+ +....+. .-.|+--++..++|...|.-+++++.-
T Consensus 201 lfe~lt~e-----------e~~~d~~v~~~~~~teeg~kv~r~~g~~f~a~f~r~~~ 246 (249)
T KOG3115|consen 201 LFERLTEE-----------EEENDPCVELLSNATEEGKKVARNGGKKFVAVFRRIPN 246 (249)
T ss_pred Hhhhcchh-----------hhcCCcchhhhhhhhhhcccccccCCceeeeeeeeccC
Confidence 76542211 1111111 113444466677777778888887653
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-18 Score=154.26 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=71.4
Q ss_pred cchhhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhh-CCCCeEEEEc
Q 021567 78 SSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLE 156 (311)
Q Consensus 78 ~s~~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiD 156 (311)
+...+..+|++++..||.++.-++.++ ++.|.. ...+.....++..|||+|||||.++..++++ .|+..++|+|
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~---~~~wr~--~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD 79 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFGQ---DRRWRR--KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVD 79 (233)
T ss_dssp -----------------------------------S--HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcH---HHHHHH--HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEec
Confidence 445688899999999999998888776 222222 1112222224679999999999999999987 4678999999
Q ss_pred hHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCC
Q 021567 157 LVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD 232 (311)
Q Consensus 157 i~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG 232 (311)
+++.+++.++ ..+..|++++++|++++ |+++++||.|++.|--..+.+ ..+.++|++|+||||
T Consensus 80 ~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-----p~~d~sfD~v~~~fglrn~~d--------~~~~l~E~~RVLkPG 146 (233)
T PF01209_consen 80 ISPGMLEVARKKLKREGLQNIEFVQGDAEDL-----PFPDNSFDAVTCSFGLRNFPD--------RERALREMYRVLKPG 146 (233)
T ss_dssp S-HHHHHHHHHHHHHTT--SEEEEE-BTTB-------S-TT-EEEEEEES-GGG-SS--------HHHHHHHHHHHEEEE
T ss_pred CCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-----cCCCCceeEEEHHhhHHhhCC--------HHHHHHHHHHHcCCC
Confidence 8776665554 45667999999999998 667999999998874211111 147899999999999
Q ss_pred eEEEEE
Q 021567 233 GKVFLQ 238 (311)
Q Consensus 233 G~l~~~ 238 (311)
|++.+.
T Consensus 147 G~l~il 152 (233)
T PF01209_consen 147 GRLVIL 152 (233)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 998874
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=144.05 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=111.2
Q ss_pred eeEEEcchhhHHHHH----hhccchhhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEecc
Q 021567 60 CNVTVIGSMACKAIA----KVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSG 135 (311)
Q Consensus 60 ~~~~~~g~~~~~~~~----~~~~s~~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcG 135 (311)
.-+||-|..|..--. .++=...+.++|++.+..||.++..++.+....-+. ....+. ...++.+|||||||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~--~~~~~~---~~~~~~~VLDlGcG 83 (261)
T PLN02233 9 SPVTFTGKLAGNSRSRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKR--MAVSWS---GAKMGDRVLDLCCG 83 (261)
T ss_pred ccceeeccccccchhhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHH--HHHHHh---CCCCCCEEEEECCc
Confidence 345666665442211 111123577799999999999887666654211110 001111 11246789999999
Q ss_pred ccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHc-------CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCC
Q 021567 136 NGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 136 tG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~-------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~ 207 (311)
||.++..++++. |+.+++|+|+++.+++.++++ ..+|+.++++|++++ |+++++||.|++.+.-.+.
T Consensus 84 tG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-----p~~~~sfD~V~~~~~l~~~ 158 (261)
T PLN02233 84 SGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-----PFDDCYFDAITMGYGLRNV 158 (261)
T ss_pred CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-----CCCCCCEeEEEEecccccC
Confidence 999999999874 678999999988887776532 245899999999887 5578899999887643332
Q ss_pred CCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 208 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 208 k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.++ ..++++++|+|||||.+.+.
T Consensus 159 ~d~--------~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 159 VDR--------LKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCH--------HHHHHHHHHHcCcCcEEEEE
Confidence 211 48999999999999999885
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=131.25 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=103.4
Q ss_pred cchhhhhhhhhhhhhhhhhhhccCCCch-hhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhC-CCCeEEEE
Q 021567 78 SSIFGLNMVESGSAVWEFLKGRMLPGVS-ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGL 155 (311)
Q Consensus 78 ~s~~~~~~fe~~a~~wd~~~~r~~~~~~-~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGi 155 (311)
++..+.++|++++..||.+++.++.+.. ...+. .+ ......++.+|||||||+|.++..+++.. |..+++|+
T Consensus 3 ~~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~---~l---~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gv 76 (231)
T TIGR02752 3 KEERVHKVFEKIYKKYDRMNSVISFQRHKKWRKD---TM---KRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGL 76 (231)
T ss_pred hHHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHH---HH---HhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEE
Confidence 4557788999999999999876655441 11100 01 11111246799999999999999999885 67899999
Q ss_pred chHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccC
Q 021567 156 ELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231 (311)
Q Consensus 156 Di~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkp 231 (311)
|+++.+++.++ ..+.+++.++++|+.++ +.+++++|.|++.+.-.+..+ ...+++++.++|+|
T Consensus 77 D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~~~~~l~~~~~--------~~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 77 DFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-----PFDDNSFDYVTIGFGLRNVPD--------YMQVLREMYRVVKP 143 (231)
T ss_pred ECCHHHHHHHHHHHHhcCCCceEEEEechhcC-----CCCCCCccEEEEecccccCCC--------HHHHHHHHHHHcCc
Confidence 98766555443 34567899999999875 335789999998765433221 14789999999999
Q ss_pred CeEEEEEe
Q 021567 232 DGKVFLQS 239 (311)
Q Consensus 232 GG~l~~~t 239 (311)
||.+++..
T Consensus 144 gG~l~~~~ 151 (231)
T TIGR02752 144 GGKVVCLE 151 (231)
T ss_pred CeEEEEEE
Confidence 99998864
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-15 Score=133.32 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=103.6
Q ss_pred hhhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhc----CCCCCCeEEEEeccccHHHHHHHhhCCC------
Q 021567 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAY----HDPAQPLVVDIGSGNGLFLLGMARKRKD------ 149 (311)
Q Consensus 80 ~~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f----~~~~~~~vLDIGcGtG~~~~~lA~~~p~------ 149 (311)
..++..|++.+..||.|+.-++.+.+ +. |.+.| ....+..+||++||||.+++.+.+..+.
T Consensus 60 ~~V~~vF~~vA~~YD~mND~mSlGiH---Rl------WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~ 130 (296)
T KOG1540|consen 60 RLVHHVFESVAKKYDIMNDAMSLGIH---RL------WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRE 130 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcchh---HH------HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCC
Confidence 46788999999999999999988872 11 22222 2224689999999999999999987665
Q ss_pred CeEEEEchHHHHHH----HHHHcCC-C--cEEEEEccccchhhhhhccCCCcEeEEEEeC-----CCCCCCCchhhhhhh
Q 021567 150 LNFLGLELVTHCRD----SLQLSGI-T--NGYFIATNATSTFRSIVASYPGKLILVSIQC-----PNPDFNRPEHRWRMV 217 (311)
Q Consensus 150 ~~vvGiDi~~~a~~----~a~~~~~-~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f-----pdP~~k~~h~krRl~ 217 (311)
.+|+++|++..++. ++++.++ + .+.++++||+++ |+++.++|.+++.| ++|
T Consensus 131 ~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-----pFdd~s~D~yTiafGIRN~th~------------ 193 (296)
T KOG1540|consen 131 SKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-----PFDDDSFDAYTIAFGIRNVTHI------------ 193 (296)
T ss_pred ceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-----CCCCCcceeEEEecceecCCCH------------
Confidence 89999998765554 4444444 2 399999999998 66899999999876 333
Q ss_pred HHHHHHHHHhcccCCeEEEEE
Q 021567 218 QRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 218 ~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++.+++++|+|||||+|.+-
T Consensus 194 -~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 194 -QKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred -HHHHHHHHHhcCCCcEEEEE
Confidence 48899999999999999863
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=110.99 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=74.9
Q ss_pred EEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCC
Q 021567 130 VDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN 208 (311)
Q Consensus 130 LDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k 208 (311)
||||||+|..+..++++ +..+++|+|+++.+++.+++.. ..++.+.++|+.++ |+++++||.|+....-.|..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-----~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-----PFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-----SS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-----ccccccccccccccceeecc
Confidence 89999999999999998 8899999999999888887654 34688999999887 55799999999875433321
Q ss_pred CchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 209 RPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 209 ~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
....+++++.|+|||||.++|
T Consensus 75 --------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 --------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --------HHHHHHHHHHHHEEEEEEEEE
T ss_pred --------CHHHHHHHHHHHcCcCeEEeC
Confidence 125899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=113.37 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cC-CCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SG-ITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+.+|||||||+|.++..+++++|+.+++|+|+++.+++.+++ .+ .+|++++++|+ ... ......+|.|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~----~~~~~~~D~v~~ 76 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFD----PDFLEPFDLVIC 76 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGG----TTTSSCEEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccC----cccCCCCCEEEE
Confidence 578999999999999999998899999999987665555432 23 47999999999 321 113566999998
Q ss_pred eC-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.. .-.+. .+. -...++++.+++.|+|||++++.+
T Consensus 77 ~~~~~~~~--~~~---~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFL--LPL---DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGC--CHH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccc--cch---hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75 21110 011 122588999999999999999864
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=124.66 Aligned_cols=98 Identities=14% Similarity=0.015 Sum_probs=82.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..++++.|+.+++|+|+++.+++.+++. ++.++++|+.++ + ++++||.|++++.-
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~-----~-~~~~fD~v~~~~~l 99 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---GVDARTGDVRDW-----K-PKPDTDVVVSNAAL 99 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---CCcEEEcChhhC-----C-CCCCceEEEEehhh
Confidence 46789999999999999999999999999999999999888654 688999998765 2 36789999998765
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|..+. ..++++++++|||||.+.+..
T Consensus 100 ~~~~d~--------~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 100 QWVPEH--------ADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhCCCH--------HHHHHHHHHhCCCCcEEEEEc
Confidence 554321 478999999999999999864
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.9e-14 Score=126.97 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=93.8
Q ss_pred hhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHH
Q 021567 89 GSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQ 166 (311)
Q Consensus 89 ~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~ 166 (311)
.+..||.+..+..|++..+.... ..+...+.. ++.+|||||||+|..+..+++. .|+.+++|+|+++.+++.++
T Consensus 24 ~a~~yd~~~~~~~p~y~~~~~~~---~~~~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~ 99 (247)
T PRK15451 24 VAEVFPDMIQRSVPGYSNIISMI---GMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR 99 (247)
T ss_pred HHHhhhhHHHhcCCChHHHHHHH---HHHHHHhCC-CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH
Confidence 46678888888888875444331 122222222 4678999999999999999884 68899999998877666654
Q ss_pred H----cCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 167 L----SGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 167 ~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+ .+. .++.++++|+.++ + ...+|.|++++.-.+... . -...++++++++|||||.|++..
T Consensus 100 ~~~~~~~~~~~v~~~~~d~~~~-----~--~~~~D~vv~~~~l~~l~~-~-----~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 100 RHIDAYKAPTPVDVIEGDIRDI-----A--IENASMVVLNFTLQFLEP-S-----ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHhcCCCCCeEEEeCChhhC-----C--CCCCCEEehhhHHHhCCH-H-----HHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 343 3799999998876 2 234677776644222111 0 12488999999999999999853
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=120.25 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=90.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.+++.+|++.|+.+++|+|.++.+ .++++..+++|++++++|+.++ +. ++++|.|+++
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~-----~~-~~~fDlV~~~ 119 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF-----GQ-EEKFDVVTSR 119 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC-----CC-CCCccEEEEc
Confidence 678999999999999999998899999999987544 4555566788899999999875 32 6789999986
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCc
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~ 259 (311)
.-.+ -+.++++++++|+|||.+++.. ...+...+.+..+..|+..
T Consensus 120 ~~~~------------~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 120 AVAS------------LSDLVELCLPLLKPGGRFLALK-GRDPEEEIAELPKALGGKV 164 (187)
T ss_pred cccC------------HHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHHHhcCceE
Confidence 3211 1589999999999999999864 4455556666667777753
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=115.38 Aligned_cols=105 Identities=15% Similarity=0.271 Sum_probs=80.8
Q ss_pred CCCeEEEEeccccHHHHHHH-hhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA-~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|.++..++ +.+|+.+++|+|+++.+++.++ +.+.+|++|.++|+.++ +..+ ++.||.|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-~~~~---~~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-PQEL---EEKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-CGCS---STTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-cccc---CCCeeEEE
Confidence 46789999999999999999 5588999999998776666554 46788999999999995 3212 27999999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
...+-.+... ...+++++.+.|++||.+++..-.
T Consensus 79 ~~~~l~~~~~--------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPD--------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSH--------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccC--------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 8844322111 147899999999999999986533
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=122.80 Aligned_cols=135 Identities=5% Similarity=-0.032 Sum_probs=95.8
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCch-hhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH
Q 021567 81 FGLNMVESGSAVWEFLKGRMLPGVS-ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT 159 (311)
Q Consensus 81 ~~~~~fe~~a~~wd~~~~r~~~~~~-~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~ 159 (311)
.+.++|++.+..||.++.-++.+.. ...+. .+........ .+.+|||||||||.++..+++.. +.+++|+|+++
T Consensus 10 ~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~---~~~~l~~~~~-~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~ 84 (226)
T PRK05785 10 ELQEAYNKIPKAYDRANRFISFNQDVRWRAE---LVKTILKYCG-RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAE 84 (226)
T ss_pred HHHHHHHhhhHHHHHhhhhccCCCcHHHHHH---HHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCH
Confidence 4667899999999999876655541 11100 1111111112 35789999999999999999886 57999999999
Q ss_pred HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCe-EEEE
Q 021567 160 HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFL 237 (311)
Q Consensus 160 ~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG-~l~~ 237 (311)
.+++.++.. ..++++|++++ |+++++||.|++.|.-.+..+ .+..+++++|+|||.+ .+.+
T Consensus 85 ~Ml~~a~~~----~~~~~~d~~~l-----p~~d~sfD~v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~ile~ 146 (226)
T PRK05785 85 NMLKMNLVA----DDKVVGSFEAL-----PFRDKSFDVVMSSFALHASDN--------IEKVIAEFTRVSRKQVGFIAM 146 (226)
T ss_pred HHHHHHHhc----cceEEechhhC-----CCCCCCEEEEEecChhhccCC--------HHHHHHHHHHHhcCceEEEEe
Confidence 999887654 24678998876 557899999998875332211 1589999999999953 4444
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=123.65 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=94.1
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH
Q 021567 81 FGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH 160 (311)
Q Consensus 81 ~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~ 160 (311)
.+...|++.+..||..........+.+ .+........+|||||||+|.++..+++. ..+++|+|+++.
T Consensus 8 ~i~~~F~~aa~~Y~~~~~~q~~~a~~l----------~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~ 75 (251)
T PRK10258 8 AIAAAFGRAAAHYEQHAELQRQSADAL----------LAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPP 75 (251)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHH----------HHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHH
Confidence 455567777777775432111111111 12222213568999999999999999875 579999999999
Q ss_pred HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 161 CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 161 a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+++.++++. ....++++|++.+ ++++++||.|+.+++-.|..+. ..++.++.++|+|||.+++.+
T Consensus 76 ~l~~a~~~~-~~~~~~~~d~~~~-----~~~~~~fD~V~s~~~l~~~~d~--------~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 76 MLAQARQKD-AADHYLAGDIESL-----PLATATFDLAWSNLAVQWCGNL--------STALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred HHHHHHhhC-CCCCEEEcCcccC-----cCCCCcEEEEEECchhhhcCCH--------HHHHHHHHHHcCCCeEEEEEe
Confidence 988886553 3467899999876 4467899999988765553321 488999999999999999976
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=120.42 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=84.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+++++|+.+++|+|+++.+++.++++ .+|+.++.+|+..+ . ++.++|.|+.++.-
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~-~~~~~~~~~d~~~~----~--~~~~fD~v~~~~~l 103 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR-LPDCQFVEADIASW----Q--PPQALDLIFANASL 103 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-CCCCeEEECchhcc----C--CCCCccEEEEccCh
Confidence 46789999999999999999999999999999999988887654 56899999998765 1 35689999988776
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|.++. ..++++++++|+|||.+.+.+
T Consensus 104 ~~~~d~--------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 104 QWLPDH--------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hhCCCH--------HHHHHHHHHhcCCCcEEEEEC
Confidence 664331 478999999999999999975
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.6e-13 Score=119.55 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=93.5
Q ss_pred hhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHH
Q 021567 88 SGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSL 165 (311)
Q Consensus 88 ~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a 165 (311)
..+..|+.+..+..|+...+... ...+.+.+.. ++.+|||||||+|.++..++++ +|+.+++|+|+++.+++.+
T Consensus 20 ~~a~~y~~~~~~~~p~y~~~~~~---~~~l~~~~~~-~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a 95 (239)
T TIGR00740 20 NVAEVFPDMIQRSVPGYSNIITA---IGMLAERFVT-PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERC 95 (239)
T ss_pred HHHHhCcchhhccCCCHHHHHHH---HHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH
Confidence 35677777766666766433322 1223333333 4678999999999999999987 4789999999987776666
Q ss_pred HH----cC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 166 QL----SG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 166 ~~----~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++ .+ ..++.++++|+.++ + ...+|.|++++.-++..... ...++++++++|+|||.+++.
T Consensus 96 ~~~~~~~~~~~~v~~~~~d~~~~-----~--~~~~d~v~~~~~l~~~~~~~------~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 96 RQHIAAYHSEIPVEILCNDIRHV-----E--IKNASMVILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred HHHHHhcCCCCCeEEEECChhhC-----C--CCCCCEEeeecchhhCCHHH------HHHHHHHHHHhcCCCeEEEEe
Confidence 43 23 24799999999876 2 12467787776655432111 148999999999999999986
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-13 Score=123.65 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=84.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC---CeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD---LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~---~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...+|||||||+|.++..+++..|. ..++|+|++..+++.+++. .+|+.++.+|+.++ |+++++||.|+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-~~~~~~~~~d~~~l-----p~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-YPQVTFCVASSHRL-----PFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-CCCCeEEEeecccC-----CCcCCceeEEEEe
Confidence 3468999999999999999988764 3799999999999988654 46899999999876 5568899999877
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHH
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 251 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~ 251 (311)
+. | ..+++++|+|||||.|++.+.......++.+.
T Consensus 159 ~~-~--------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 159 YA-P--------------CKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred cC-C--------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 53 2 34678999999999999987655444444433
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-12 Score=111.97 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=90.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||||||+|.+++.+++++|+.+++|+|++..+++.+ +..++.++.++.+|+... + +.++|.|++
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~---~~~~D~v~~ 103 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----L---PGKADAIFI 103 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----c---CcCCCEEEE
Confidence 45789999999999999999999999999999876655544 345667899999997432 2 457999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
...... -+.+++.+.++|+|||.+++..-...-..+..+.+++.|+....
T Consensus 104 ~~~~~~-----------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 104 GGSGGN-----------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CCCccC-----------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcce
Confidence 643211 14789999999999999988643344456777888898876443
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-12 Score=125.80 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=79.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||||||+|.++..+++++ +.+++|||+++.+++.+ +..++ +++.|+++|+.++ ++++++||.|+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-----~~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-----PFEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-----CCCCCCccEEE
Confidence 45789999999999999999987 67999999877655544 34455 5799999999876 44689999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
....-.+..+ ...++++++|+|||||.|++.+
T Consensus 192 s~~~~~h~~d--------~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMPD--------KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccCC--------HHHHHHHHHHHcCCCcEEEEEE
Confidence 7644332211 1489999999999999999865
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=123.29 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=80.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+. +.+++|||+++.+++.++.+ +. .++.++++|++++ +..+++||.|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-----~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-----ADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-----hhccCCCCEEE
Confidence 3568999999999999999974 67999999987777666532 22 4899999999876 33578999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
....-.+..+ ...++++++++|||||.+++.|.+...
T Consensus 204 ~~~vLeHv~d--------~~~~L~~l~r~LkPGG~liist~nr~~ 240 (322)
T PLN02396 204 SLEVIEHVAN--------PAEFCKSLSALTIPNGATVLSTINRTM 240 (322)
T ss_pred EhhHHHhcCC--------HHHHHHHHHHHcCCCcEEEEEECCcCH
Confidence 7542221111 148999999999999999998876543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=116.21 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=83.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..+|||||||+|.++..+++..|..+++|+|++..+++.++....+|+.++.+|+.+. +.+++++|.|+.+..-.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL-----PLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC-----CCCCCceeEEEEhhhhh
Confidence 4689999999999999999999999999999998888777655446899999999876 33578999999886554
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
|..+. ..+++++.++|+|||.+++.+
T Consensus 110 ~~~~~--------~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 110 WCDDL--------SQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hccCH--------HHHHHHHHHHcCCCcEEEEEe
Confidence 43221 478999999999999999875
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=112.87 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=84.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.+++.+|...|+.+++|+|.++.++ +++++.+++|++++++|+.++ + .++++|.|+++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-----~-~~~~fD~I~s~ 116 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-----Q-HEEQFDVITSR 116 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-----c-ccCCccEEEeh
Confidence 5789999999999999999888889999999876544 444456778899999999875 1 25789999876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHH---HHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK---QQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~---~~l~~~g~~~~ 260 (311)
. + ++ -+.+++.+.++|+|||.+++.... .....+. +.+.-.|...+
T Consensus 117 ~---~----~~-----~~~~~~~~~~~LkpgG~lvi~~~~-~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 117 A---L----AS-----LNVLLELTLNLLKVGGYFLAYKGK-KYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred h---h----hC-----HHHHHHHHHHhcCCCCEEEEEcCC-CcHHHHHHHHHhhhhcCceEe
Confidence 3 1 11 147889999999999999987433 2333333 33333566543
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=111.73 Aligned_cols=105 Identities=19% Similarity=0.306 Sum_probs=79.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...+||||||+|.+++.++++.|+.+++++|+++.|++.++ .++++++.++.+|..+. + .++.||.|++|
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~----~--~~~~fD~Iv~N 105 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA----L--PDGKFDLIVSN 105 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----C--CTTCEEEEEE-
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----c--cccceeEEEEc
Confidence 57899999999999999999999989999998776665554 46777799999998654 2 36899999999
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
-| .....+ .-..+..+++++..+.|+|||.+++..
T Consensus 106 PP--~~~~~~-~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 106 PP--FHAGGD-DGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp ----SBTTSH-CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc--hhcccc-cchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 33 222221 111234799999999999999997654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=117.22 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=87.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCC---CcEEEEEccccchhhhhhccCCCcEeEEEE-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGI---TNGYFIATNATSTFRSIVASYPGKLILVSI- 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~---~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i- 200 (311)
.+.+|||||||-|.++..||+. +.+|+|+|+++.+++.++.+.. -++.+.+..++++.. ..++||+|+.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~-----~~~~FDvV~cm 131 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS-----AGGQFDVVTCM 131 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh-----cCCCccEEEEh
Confidence 4689999999999999999998 5899999999888777764322 246688888888732 2489999975
Q ss_pred ----eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHH
Q 021567 201 ----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL 253 (311)
Q Consensus 201 ----~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~ 253 (311)
+.||| ..|+..+.+.+||||.++++|-++....++...+.
T Consensus 132 EVlEHv~dp-------------~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ 175 (243)
T COG2227 132 EVLEHVPDP-------------ESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG 175 (243)
T ss_pred hHHHccCCH-------------HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH
Confidence 46777 48999999999999999999988777666655443
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-12 Score=110.67 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|||+|.++..+|+..|+..++|+|.++.+++.+ ++.+..|++++.+|+.+.++.. ....|.+++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~----~~~~d~v~~ 115 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL----APAPDRVCI 115 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC----CCCCCEEEE
Confidence 46789999999999999999888889999999876555544 4457778999999997643321 223466666
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
....++ +.+++++.++|+|||.+++.+...+......+.+++.+
T Consensus 116 ~~~~~~------------~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 116 EGGRPI------------KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred ECCcCH------------HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 432221 48899999999999999998766555555566666544
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.8e-12 Score=113.15 Aligned_cols=133 Identities=19% Similarity=0.255 Sum_probs=96.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...|||+|||+|.++..+++..|+.+++|+|++..+.+.+ ...+++|+.++++|+.+. + +++++|.|+.+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~--~~~~fD~Vi~n 161 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP----L--PGGKFDLIVSN 161 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----C--cCCceeEEEEC
Confidence 4589999999999999999999999999999876655544 445677899999998653 2 36789999987
Q ss_pred CCCCCCCCchh----------hhhh--------hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeee
Q 021567 202 CPNPDFNRPEH----------RWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 263 (311)
Q Consensus 202 fpdP~~k~~h~----------krRl--------~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~ 263 (311)
.|--.....+. +..+ ....+++.+.++|+|||.+++..... ..+.+.+.+.+.|+....+.
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-QGEAVRALFEAAGFADVETR 240 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-HHHHHHHHHHhCCCCceEEE
Confidence 44211000000 0000 11478999999999999999987543 35667888888898766665
Q ss_pred cc
Q 021567 264 QD 265 (311)
Q Consensus 264 ~d 265 (311)
+|
T Consensus 241 ~d 242 (251)
T TIGR03534 241 KD 242 (251)
T ss_pred eC
Confidence 44
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-12 Score=116.81 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=77.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...+|||||||+|.++..+++. +.+++|+|+++.+++.++ ..++ +|+.++++|+.++.+ ..+++||.|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~----~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ----HLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh----hcCCCCCEEE
Confidence 3578999999999999999987 578999998876666554 3454 579999999988621 2468899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.+-.|..++ ..+++++.++|||||.+.+..
T Consensus 118 ~~~vl~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVADP--------KSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCCH--------HHHHHHHHHHcCCCeEEEEEE
Confidence 76432222111 478999999999999998754
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-12 Score=116.48 Aligned_cols=127 Identities=11% Similarity=0.157 Sum_probs=93.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
..+|||+|||+|.+++.+|++.|+.+++|+|+++.+++.+ +.+++ .++.++++|+.+. + ++.+||.|++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~--~~~~fD~Iv~ 195 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L--PGRKYDLIVS 195 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c--CCCCccEEEE
Confidence 4689999999999999999999999999999977665554 44566 4699999998543 2 3557999998
Q ss_pred eCCCCCCCCch-----------hhhh--------hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRPE-----------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~h-----------~krR--------l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
+ .|+.+... ++.. .....+++++.+.|+|||.+++.+.+.. +.+.+.+.+.++.+..
T Consensus 196 N--PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~--~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 196 N--PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM--EALEEAYPDVPFTWLE 271 (284)
T ss_pred C--CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH--HHHHHHHHhCCCceee
Confidence 8 23322110 0000 1236789999999999999999887633 5777888888876654
Q ss_pred e
Q 021567 262 L 262 (311)
Q Consensus 262 ~ 262 (311)
.
T Consensus 272 ~ 272 (284)
T TIGR03533 272 F 272 (284)
T ss_pred e
Confidence 3
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=108.78 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=90.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||+|||+|.++..+++..+ +++|+|+++.+++.+++ .+. ++.++.+|+.+. .++++|.|+.+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-------~~~~fD~Vi~n 89 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG-------VRGKFDVILFN 89 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc-------cCCcccEEEEC
Confidence 46899999999999999999865 89999987766655543 343 689999997654 14589999988
Q ss_pred CCCCCCCCchhh---------------hhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 202 CPNPDFNRPEHR---------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 fpdP~~k~~h~k---------------rRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.| +....... -+.+..++++++.++|+|||.+++.+....-..++.+.+.+.|+....+
T Consensus 90 ~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 90 PP--YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CC--CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 43 22111000 0122468999999999999999987644433557788888888865433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.4e-13 Score=103.78 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=68.9
Q ss_pred EEEEeccccHHHHHHHhhC---CCCeEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 129 VVDIGSGNGLFLLGMARKR---KDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~~---p~~~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
|||+|||+|..+..+++.+ |+.+++|+|+++.+++.+++.. -.+++++++|+.++ +..++++|.|+..+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l-----~~~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL-----PFSDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH-----HHHSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC-----cccCCCeeEEEEcC
Confidence 7999999999999999886 5689999999998888776543 13899999999986 22478999998843
Q ss_pred C-CCCCCCchhhhhhhHHHHHHHHHhcccCCe
Q 021567 203 P-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 233 (311)
Q Consensus 203 p-dP~~k~~h~krRl~~~~~l~~i~rvLkpGG 233 (311)
. -.++. +-....+++++.++|+|||
T Consensus 76 ~~~~~~~------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLS------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSS------HHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCC------HHHHHHHHHHHHHHhCCCC
Confidence 2 11111 1122689999999999998
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-12 Score=101.21 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=78.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.++||||||+|.++..++++.|+.+++|+|.++.+.+.+ +..+..++.++.+|+...+. ....++|.|++
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~D~v~~ 94 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE----DSLPEPDRVFI 94 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh----hhcCCCCEEEE
Confidence 35689999999999999999999889999999876655544 44567789999999876422 12458999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..+... ..++++++++.|+|||.|++..
T Consensus 95 ~~~~~~-----------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 95 GGSGGL-----------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCcchh-----------HHHHHHHHHHHcCCCCEEEEEe
Confidence 643211 1489999999999999999854
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-12 Score=113.73 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=91.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||+|||+|.++..+|+..+...|+|+|+++.+++.+.+ ...+|+.++.+|+..... ..+ .+.+||.|+...
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~-~~~-l~~~~D~i~~d~ 149 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPER-YAH-VVEKVDVIYQDV 149 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcch-hhh-ccccCCEEEECC
Confidence 4679999999999999999998776799999998766554321 123789999999875311 111 135699999888
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-----eCc----HHHHHHHHHHHHhcCCCceee
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-----SDI----EEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-----tD~----~~~~~~~~~~l~~~g~~~~~~ 262 (311)
++||. ...++++++++|||||.+++. .|+ ....+...+.+++.|+.....
T Consensus 150 ~~p~~----------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 150 AQPNQ----------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred CChhH----------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 87761 135789999999999999994 332 233345568888888875533
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-12 Score=101.07 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=79.6
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+|||+|||+|.+++.+++.. ..+++|+|+.+.+.+.++ ..+. +++.++++|+.+..+ +..++++|.|+.+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE---PLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH---TCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh---hccCceeEEEEEC
Confidence 579999999999999999997 789999999776655554 3454 579999999988742 2257899999998
Q ss_pred CCCCCCCCch--hhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h--~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
- |+....+ ...+-....+++++.++|+|||.+++.+
T Consensus 78 p--P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 P--PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ---STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C--CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 4 4432211 1112245799999999999999999875
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-12 Score=119.48 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=92.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.+|||||||+|.++..+++..+..+++|+|+++.+++.++++ ...|+.++.+|++++ ++++++||.|+++..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-----p~~~~sFDvVIs~~~ 187 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-----PFPTDYADRYVSAGS 187 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-----CCCCCceeEEEEcCh
Confidence 35689999999999999999988888999999998888777654 245799999999876 445789999987643
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH-H---------------HHHHHHHHHHhcCCCceee
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-E---------------VMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~-~---------------~~~~~~~~l~~~g~~~~~~ 262 (311)
-.+..+. ...+++++++|+|||.+.+..... . -.+++.+.+++.|+....+
T Consensus 188 L~~~~d~--------~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 188 IEYWPDP--------QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhhCCCH--------HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 2221111 368999999999999998753210 0 1245566777777765443
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=119.29 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=84.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cC---CCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SG---ITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
..+|||+|||+|.+++.+++++|+.+++++|.++.|++.+++ ++ ..+++++.+|+... + .+.+||.|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~----~--~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG----V--EPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc----C--CCCCEEEE
Confidence 458999999999999999999999999999998777666543 33 24789999987543 1 35689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-HHHHHHHHHH
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQ 251 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~~~~~~~~~~ 251 (311)
++|-|-.. .+.-...+..++++.++++|+|||.+++..+- .+|...+.+.
T Consensus 303 lsNPPfh~---~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~ 353 (378)
T PRK15001 303 LCNPPFHQ---QHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI 353 (378)
T ss_pred EECcCccc---CccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHH
Confidence 99833221 11100112357899999999999999998632 4455444443
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=108.47 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=96.5
Q ss_pred hhhhhhhhhhhhhhhhccCCCch-hhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHH
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVS-ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTH 160 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~-~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~ 160 (311)
.++|+..+..||..+.....+.. .... ..........+.+|||+|||+|.++..+++..|. .+++|+|+++.
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~ 75 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRR------RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE 75 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHH------HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH
Confidence 45677788888888776554431 1110 0111111114679999999999999999999876 79999999877
Q ss_pred HHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 161 CRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 161 a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+++.++++ ...++.++.+|+.+. +..++.+|.|++++.-.+... ...+++++.+.|+|||.+++.
T Consensus 76 ~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~i~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 76 MLEVAKKKSELPLNIEFIQADAEAL-----PFEDNSFDAVTIAFGLRNVTD--------IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred HHHHHHHHhccCCCceEEecchhcC-----CCCCCcEEEEEEeeeeCCccc--------HHHHHHHHHHHcCCCcEEEEE
Confidence 77666543 235799999999876 234678999987653222111 147899999999999999975
Q ss_pred e
Q 021567 239 S 239 (311)
Q Consensus 239 t 239 (311)
.
T Consensus 143 ~ 143 (223)
T TIGR01934 143 E 143 (223)
T ss_pred E
Confidence 3
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=107.68 Aligned_cols=119 Identities=13% Similarity=0.184 Sum_probs=90.8
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHH----HHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRD----SLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~----~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+..+||+|||+|.+++.+|+. .+..+++++|+++.+++ +++..+ ..|+.++.+|+.+.+.. .++.+|.|
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----~~~~~D~V 115 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----INEKFDRI 115 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh----cCCCCCEE
Confidence 4679999999999999999986 45679999998765554 444556 47899999999875322 24689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
++...... ...+++++.++|+|||++++.+-..+....+.+.+++.|+.
T Consensus 116 ~~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 116 FIGGGSEK-----------LKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN 164 (198)
T ss_pred EECCCccc-----------HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence 98643221 14789999999999999998655555567788888888873
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-11 Score=103.78 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=98.4
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCC
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
+..-.+ ++.+++|||||||.+++.+|...|..++++||-.+.+ .+++++.+.+|+.++.+||.+.+++ .+
T Consensus 28 s~L~~~-~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~----~~- 101 (187)
T COG2242 28 SKLRPR-PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD----LP- 101 (187)
T ss_pred HhhCCC-CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC----CC-
Confidence 333344 5789999999999999999988999999999975544 4455567899999999999988542 23
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
++|.|++.-.- ++ +.+|+.+...|||||++++..-..+-...+.+.+++.|+.
T Consensus 102 ~~daiFIGGg~----------~i--~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 102 SPDAIFIGGGG----------NI--EEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred CCCEEEECCCC----------CH--HHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 79999998321 11 5899999999999999999776666677788889999883
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=110.56 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=101.4
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEch----HHHHHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi----~~~a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||.|+|+|.++..||.. .|..+++.+|+ .+.|+++++..++.| +.+..+|+.+.. + +..||.|
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~---~---~~~vDav 167 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI---D---EEDVDAV 167 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc---c---ccccCEE
Confidence 5789999999999999999974 78899999996 456778877778766 999999998762 2 3499999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
++..|+|| +.++.+++.|+|||.+.+.+-+-+..+...+.+++.||-.+
T Consensus 168 ~LDmp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 168 FLDLPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred EEcCCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccch
Confidence 99999999 89999999999999999988887888888899999987654
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=111.34 Aligned_cols=131 Identities=14% Similarity=0.180 Sum_probs=93.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..++||+|||+|.+++.+++..|..+++|+|++..|++.++++- ..+++++++|+.+.+... ..+.||.|++|-|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~---~~~~fDlVv~NPP- 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTA---LRGRVDILAANAP- 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchh---cCCCEeEEEECCC-
Confidence 35899999999999999999988889999999887777665431 123588999987653221 1357999998833
Q ss_pred CCCCCc-----------h-hhhhh--------hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 205 PDFNRP-----------E-HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 205 P~~k~~-----------h-~krRl--------~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+.... | .+..+ +...+++.+.+.|+|||.+++.+.... ...+.+.+.++|+.....
T Consensus 163 -y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~-~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 163 -YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ-APLAVEAFARAGLIARVA 238 (251)
T ss_pred -CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch-HHHHHHHHHHCCCCceee
Confidence 32110 0 00011 135888899999999999999987654 567888888888765443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=117.30 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=74.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH--Hc--C-CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ--LS--G-ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~--~~--~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||||||+|.++..+++..+. .|+|+|.+..++.+++ .. + ..|+.++.+|++++ +. ++.||.|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-----p~-~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-----PA-LKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-----CC-cCCcCEEE
Confidence 4679999999999999999998754 6999998776554321 11 2 34799999999876 43 67899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-. |.+ --..++++++++|+|||.+++.+
T Consensus 195 s~~vl~------H~~--dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLY------HRR--SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhh------ccC--CHHHHHHHHHHhcCCCcEEEEEE
Confidence 753211 111 11478999999999999999864
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=112.95 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=78.2
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||||||+|..++.+++. .+..+++|+|+++.+++.++ ..+.+|+.++.+|++++ +.++++||.|+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-----~~~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-----PVADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-----CCCCCceeEEE
Confidence 4689999999999998888776 45678999998776665554 34677999999998876 33578999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.++.-.+... .+..+++++++|||||+|++.
T Consensus 152 ~~~v~~~~~d--------~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 152 SNCVINLSPD--------KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EcCcccCCCC--------HHHHHHHHHHHcCCCcEEEEE
Confidence 7753222111 147899999999999999984
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=113.77 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=77.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC--CCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||||||+|..+..+++.+ +.+++|+|+++.+++.++++. ..++.++++|+... ++++++||.|+...
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-----~~~~~~FD~V~s~~ 125 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-----DFPENTFDMIYSRD 125 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-----CCCCCCeEEEEEhh
Confidence 46789999999999999998865 579999999988877776432 35799999998765 44678999998752
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.-.+... -....++++++++|||||.|++.
T Consensus 126 ~l~h~~~------~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 126 AILHLSY------ADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred hHHhCCH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 2111100 01158999999999999999984
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-11 Score=108.68 Aligned_cols=132 Identities=17% Similarity=0.279 Sum_probs=96.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...+|||||||+|..++.+|++.+++.++|||+.+++.+.|+ .+++ ++++++++|+.++... . ...+||.|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~-~--~~~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA-L--VFASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-c--cccccCEEE
Confidence 367999999999999999999988899999998766555543 3444 5799999999998442 2 245799999
Q ss_pred EeCCCCCCCCchh-----hh---hh----hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 200 IQCPNPDFNRPEH-----RW---RM----VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 200 i~fpdP~~k~~h~-----kr---Rl----~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+| +|.++.... .+ |+ .-+++++...++|||||.+++..--+ -..+..+.+..++++...+
T Consensus 121 ~N--PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-rl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 121 CN--PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-RLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred eC--CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-HHHHHHHHHHhcCCCceEE
Confidence 98 455443211 11 11 12899999999999999999976433 3445677778877765433
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=107.31 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=74.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+|||+|||+|.++..||++ +.+++|+|++..+++.+ ...++.|+.+..+|+.++ + .+++||.|+.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-----T-FDGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-----C-cCCCcCEEEE
Confidence 3578999999999999999987 57999999987666554 345677899999998765 2 1467999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++.-.+... -..+.++++++++|+|||.+++.
T Consensus 102 ~~~~~~~~~------~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 102 TVVLMFLEA------KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ecchhhCCH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 754222110 11258999999999999996553
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-11 Score=111.94 Aligned_cols=128 Identities=17% Similarity=0.294 Sum_probs=94.8
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.|||||||||.+++.+|.+.|+.+|+|+|++..|++.| +.+++.|+.++++|...- -.+.||.|+.|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-------~~~~fDlIVsN-- 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-------LRGKFDLIVSN-- 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-------cCCceeEEEeC--
Confidence 79999999999999999999999999999988766555 455666777777765443 24589999998
Q ss_pred CCCCCCc-----------hhhh--------hhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC-CCceeee
Q 021567 204 NPDFNRP-----------EHRW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKLVLV 263 (311)
Q Consensus 204 dP~~k~~-----------h~kr--------Rl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g-~~~~~~~ 263 (311)
.|+.... .+.. .-+..++++++.+.|+|||.+.+..+.. ..+.+.+.+.+.+ +....+.
T Consensus 184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-QGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-cHHHHHHHHHhcCCceEEEEE
Confidence 3443332 1111 1133789999999999999999987643 4677888899998 4444444
Q ss_pred cc
Q 021567 264 QD 265 (311)
Q Consensus 264 ~d 265 (311)
+|
T Consensus 263 ~d 264 (280)
T COG2890 263 KD 264 (280)
T ss_pred ec
Confidence 43
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.6e-11 Score=115.36 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=96.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.++||||||+|.+++.+++..|+.+++|+|+++.|++.+++ .+. ++.++++|+.+.. ++ .+++||.|++|
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~---l~-~~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTD---MP-SEGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccc---cc-cCCCccEEEEC
Confidence 468999999999999999999999999999998777766543 343 7999999986531 11 24579999988
Q ss_pred CCCCCCCCch-----------hhhhh--------hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 202 CPNPDFNRPE-----------HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 fpdP~~k~~h-----------~krRl--------~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
- |...... ++..+ +.+++++.+.+.|+|||.+++..+. ...+.+.+.+.+.|+....+
T Consensus 327 P--PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 327 P--PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred C--CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCCCcEEEE
Confidence 3 3322110 01111 2257888889999999999998865 45677888888888876656
Q ss_pred ecc
Q 021567 263 VQD 265 (311)
Q Consensus 263 ~~d 265 (311)
.+|
T Consensus 404 ~kD 406 (423)
T PRK14966 404 LPD 406 (423)
T ss_pred EEc
Confidence 555
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-11 Score=110.80 Aligned_cols=130 Identities=14% Similarity=0.198 Sum_probs=91.9
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+|||+|||+|.+++.++...|+.+++|+|++..+++.++ ..++. ++.|+++|+.+. + ++..||.|++|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~--~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----L--AGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----C--cCCCccEEEEC
Confidence 5899999999999999999999999999999876665554 44665 499999998653 2 23479999987
Q ss_pred CCCCCCCCch-----------hhhh--------hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHH-hcCCCcee
Q 021567 202 CPNPDFNRPE-----------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL-EYGKGKLV 261 (311)
Q Consensus 202 fpdP~~k~~h-----------~krR--------l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~-~~g~~~~~ 261 (311)
+|+..... ++.. .....+++++.+.|+|||.+++.+.+. ..+.+.+.+. ..++....
T Consensus 190 --PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-q~~~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 190 --PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-QQKSLKELLRIKFTWYDVE 266 (284)
T ss_pred --CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-HHHHHHHHHHhcCCCceeE
Confidence 23322211 0000 123678999999999999999988653 4445556666 35665555
Q ss_pred eecc
Q 021567 262 LVQD 265 (311)
Q Consensus 262 ~~~d 265 (311)
+.+|
T Consensus 267 ~~~D 270 (284)
T TIGR00536 267 NGRD 270 (284)
T ss_pred EecC
Confidence 5444
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-11 Score=108.51 Aligned_cols=129 Identities=15% Similarity=0.199 Sum_probs=94.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
....|||+|||+|.++..+++..|+.+++|+|++..+++.++++ ...++.++.+|+... + .+++||.|+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----~--~~~~fD~Iv~ 181 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----L--PGGRFDLIVS 181 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc----C--CCCceeEEEE
Confidence 35689999999999999999999999999999988777666542 345899999998543 1 2578999998
Q ss_pred eCCCCCCCCch------------hhhh--------hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPE------------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h------------~krR--------l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
+.| +..... .... .....+++++.++|+|||.+++.+++. ..+.+.+.+.+.|+...
T Consensus 182 npP--y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~-~~~~~~~~l~~~gf~~v 258 (275)
T PRK09328 182 NPP--YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD-QGEAVRALLAAAGFADV 258 (275)
T ss_pred CCC--cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch-HHHHHHHHHHhCCCcee
Confidence 733 221110 0000 112578899999999999999988653 45677788888887644
Q ss_pred ee
Q 021567 261 VL 262 (311)
Q Consensus 261 ~~ 262 (311)
..
T Consensus 259 ~~ 260 (275)
T PRK09328 259 ET 260 (275)
T ss_pred EE
Confidence 44
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-11 Score=112.17 Aligned_cols=126 Identities=12% Similarity=0.196 Sum_probs=91.0
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+|||+|||+|.+++.+++.+|+.+++|+|+++.+++.++ .+++. ++.++++|+.+. + ++++||.|+.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l--~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L--PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C--CCCCccEEEEC
Confidence 5899999999999999999999999999999876665554 44653 599999998653 2 24689999987
Q ss_pred CCCCCCCCch-----------hhh--------hhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 202 CPNPDFNRPE-----------HRW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 fpdP~~k~~h-----------~kr--------Rl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.|...... ++. --....+++++.+.|+|||.+++.+... .+.+.+.+...++.+..+
T Consensus 209 --PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 209 --PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHLEEAYPDVPFTWLEF 284 (307)
T ss_pred --CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHhhCCCEEEEe
Confidence 23322100 000 0123578999999999999999988764 335667777777655444
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=108.70 Aligned_cols=119 Identities=17% Similarity=0.080 Sum_probs=92.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
....|+|||||+|..+..|++++|++.++|+|-|..++.+|+. .+.|++|..+|+.+.- ++...|+++.|-.-
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-rlp~~~f~~aDl~~w~------p~~~~dllfaNAvl 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-RLPDATFEEADLRTWK------PEQPTDLLFANAVL 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-hCCCCceecccHhhcC------CCCccchhhhhhhh
Confidence 3568999999999999999999999999999999999999854 4679999999998761 46778888776444
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe-Cc--HHHHHHHHHHHHhcCCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DI--EEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-D~--~~~~~~~~~~l~~~g~~ 258 (311)
.|..+ | .++|..+...|.|||++.++. || +....-|.+..++.++.
T Consensus 103 qWlpd-H-------~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~ 151 (257)
T COG4106 103 QWLPD-H-------PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFA 151 (257)
T ss_pred hhccc-c-------HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchh
Confidence 44322 1 488999999999999999984 33 23345566666655443
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=114.24 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=69.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||.|.+++.+|+++ +++|+||.+|+. +.+++++.|+. ++.+..+|..++ +..||.|+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~--------~~~fD~Iv 132 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL--------PGKFDRIV 132 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------S-SEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc--------CCCCCEEE
Confidence 57899999999999999999998 789999999865 44555566774 599999998765 34899987
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..-.--+. .+--.+.|++.+.++|||||++++.+
T Consensus 133 Si~~~Ehv------g~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 133 SIEMFEHV------GRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EESEGGGT------CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEechhhc------ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 65221111 01122699999999999999999864
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-12 Score=102.36 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=58.0
Q ss_pred EEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 130 VDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 130 LDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
||||||+|.++..+++++|..+++|+|+++.++ ++....+..+...+..+..+.... ...++||.|++...-.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY---DPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C---CC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc---ccccccceehhhhhHh
Confidence 799999999999999999999999999887666 344444545666666665554221 1236999999887665
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccCCeEE
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 235 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkpGG~l 235 (311)
|..+ .+.+++.++++|+|||.|
T Consensus 78 ~l~~--------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLED--------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S---------HHHHHHHHTTT-TSS-EE
T ss_pred hhhh--------HHHHHHHHHHHcCCCCCC
Confidence 5421 148999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=109.75 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=72.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH-cCC---------------CcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SGI---------------TNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~-~~~---------------~Nv~f~~~Da~~ll~~~~ 188 (311)
++.++||+|||.|..++.||++ +.+|+|+|+|+.|++.+.+ +++ .+|+++++|+.++.....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 4579999999999999999987 7899999999999887532 332 368999999987621101
Q ss_pred ccCCCcEeEEEE-eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 189 ASYPGKLILVSI-QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 189 ~~~~~s~D~V~i-~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+..+..+|..++ ++| | -.++.+++.+.++|||||.+++.+
T Consensus 112 ~~fD~i~D~~~~~~l~-~----------~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-E----------EMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCcCEEEechhhccCC-H----------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 111334444332 222 2 123589999999999999866653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-11 Score=105.68 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=94.7
Q ss_pred chhhhhhhhhhhhhhhhhhhccCCCc-hhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCC-CCeEEEEc
Q 021567 79 SIFGLNMVESGSAVWEFLKGRMLPGV-SALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLE 156 (311)
Q Consensus 79 s~~~~~~fe~~a~~wd~~~~r~~~~~-~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiD 156 (311)
+....++|+..+..|+.+......+. ..... .........++.+|||||||+|.++..+++..| +.+++|+|
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D 83 (239)
T PRK00216 10 QEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRR------KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLD 83 (239)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHH------HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEe
Confidence 34566788888888887654333222 11100 001111111357899999999999999999987 78999999
Q ss_pred hHHHHHHHHHHc----C-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccC
Q 021567 157 LVTHCRDSLQLS----G-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231 (311)
Q Consensus 157 i~~~a~~~a~~~----~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkp 231 (311)
+++.+++.++++ + ..++.++.+|+.+. +..++++|.|++.+.-.+... ...+++.+.++|+|
T Consensus 84 ~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~I~~~~~l~~~~~--------~~~~l~~~~~~L~~ 150 (239)
T PRK00216 84 FSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-----PFPDNSFDAVTIAFGLRNVPD--------IDKALREMYRVLKP 150 (239)
T ss_pred CCHHHHHHHHHhhcccccccCeEEEecccccC-----CCCCCCccEEEEecccccCCC--------HHHHHHHHHHhccC
Confidence 887666665442 2 24699999999876 224678999987543211111 14889999999999
Q ss_pred CeEEEEE
Q 021567 232 DGKVFLQ 238 (311)
Q Consensus 232 GG~l~~~ 238 (311)
||.+++.
T Consensus 151 gG~li~~ 157 (239)
T PRK00216 151 GGRLVIL 157 (239)
T ss_pred CcEEEEE
Confidence 9998874
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=113.33 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=77.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.++||||||.|.+++.+|+++ +++|+|+++|+. +.+++++.|+. |+++...|..++ ++.||.|+
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~--------~e~fDrIv 142 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF--------EEPFDRIV 142 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--------ccccceee
Confidence 57899999999999999999999 899999999865 44555667886 899999998776 33489887
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..=.--++... -.+.|++.++++|+|||.+.+.+
T Consensus 143 SvgmfEhvg~~------~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 143 SVGMFEHVGKE------NYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ehhhHHHhCcc------cHHHHHHHHHhhcCCCceEEEEE
Confidence 54111111010 12699999999999999999865
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-11 Score=106.44 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=78.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHc---CCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~---~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++.. |..+++|+|++...++.++++ ...++.+..+|+... +..++.+|.|++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~ 93 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-----PFPDGSFDAVRS 93 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-----CCCCCCceEEEE
Confidence 45789999999999999999987 788999999987766666543 346899999998775 335788999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...-.+..+ ...++++++++|+|||.+++.
T Consensus 94 ~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 94 DRVLQHLED--------PARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred echhhccCC--------HHHHHHHHHHHhcCCcEEEEE
Confidence 643222111 147899999999999999875
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-11 Score=118.91 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=78.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CC-CcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++.+|||||||+|.++..+|+.. +.+++|+|+++.+++.++++ +. .++.|+++|+... +.++++||.|+..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~I~s~ 339 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK-----TYPDNSFDVIYSR 339 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC-----CCCCCCEEEEEEC
Confidence 45789999999999999999876 67999999998888777543 22 4799999998775 3357899999875
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..-.|..+ .+.++++++++|||||.+++.+
T Consensus 340 ~~l~h~~d--------~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 340 DTILHIQD--------KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CcccccCC--------HHHHHHHHHHHcCCCeEEEEEE
Confidence 33222211 1489999999999999999863
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-11 Score=107.41 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=74.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+..+ +.+++|+|+++. |.+++++.+++|+.++++|+.+... ....||.|+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Ii 151 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-----PLAPYDRIY 151 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-----ccCCCCEEE
Confidence 467999999999999999999854 568999997654 4455556678899999999976521 246899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+..+.+ .+.+.+.+.|+|||++++..
T Consensus 152 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 152 VTAAGP--------------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EcCCcc--------------cccHHHHHhcCcCcEEEEEE
Confidence 875433 33456788999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.5e-11 Score=105.23 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=76.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh--hhhh-ccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--RSIV-ASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll--~~~~-~~~~~s~D~V~i 200 (311)
++..|||||||||.++..++++. +...++|||+++. ....++.++++|+.+.. +.+. +..++++|.|+.
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 46789999999999999999985 4579999999761 23468999999998841 1110 124688999998
Q ss_pred eCCCCCCCCc-hhhhhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRP-EHRWRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~-h~krRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++...|.-.. ...-+. ....+|+++.++|+|||.|++.+
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 7532221111 000011 12578999999999999999964
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-11 Score=121.58 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=81.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+.+|||||||+|.++..+|+.+|+.+++|+|+++.+++.++++ ...++.++++|+.++ +..+ ++++||.|++++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL-p~~f--edeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL-SSSF--EKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC-cccc--CCCCEEEEEEch
Confidence 5799999999999999999999999999999988877776542 124688999999875 3223 578999998764
Q ss_pred CCCCC------CCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDF------NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~------k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+-.+. ...+. .......++++++++|||||.+++.
T Consensus 496 vLH~L~syIp~~g~~f-~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 496 ILHELFSYIEYEGKKF-NHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHhhhhhcccccccc-cHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 32211 00000 0012258999999999999999996
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=105.90 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=97.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEch----HHHHHHHHHHcCC-CcEEEEEccccchhhhhhc-cCCCcEeE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVA-SYPGKLIL 197 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi----~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~-~~~~s~D~ 197 (311)
++.+|||.|+|+|.++..||+. .|..+++..|. .+.|.++.+..++ +|+.+.+.|+..- -|+ ..+..+|.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~---g~~~~~~~~~Da 116 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE---GFDEELESDFDA 116 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-----STT-TTSEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc---cccccccCcccE
Confidence 4789999999999999999976 78999999996 4567777777787 4899999998642 121 12478999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcc-cCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL-VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvL-kpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
|++..|+|| ..+..+.++| +|||++.+-+-+-+....+++.++++||..+
T Consensus 117 vfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 117 VFLDLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDI 167 (247)
T ss_dssp EEEESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEE
T ss_pred EEEeCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeee
Confidence 999999999 7789999999 8999999989888888899999999997554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-11 Score=108.02 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=72.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH-HcCC---------------CcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGI---------------TNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~-~~~~---------------~Nv~f~~~Da~~ll~~~~ 188 (311)
.+.+|||+|||.|..++.||++ +.+|+|||+++.|++++. ++++ .+|++.++|+.++...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~-- 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA-- 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc--
Confidence 4579999999999999999987 789999999999998863 3333 3688999999887211
Q ss_pred ccCCCcEeEEE-----EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 189 ASYPGKLILVS-----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 189 ~~~~~s~D~V~-----i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
..+.||.|+ +.+| |. .++++++.+.++|+|||.+++
T Consensus 113 --~~~~fd~v~D~~~~~~l~-~~----------~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 --DLADVDAVYDRAALIALP-EE----------MRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred --cCCCeeEEEehHhHhhCC-HH----------HHHHHHHHHHHHcCCCCeEEE
Confidence 124677775 3332 21 235899999999999997555
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=102.77 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=86.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|.++..+++.. ..+++|+|++..+++.++ ..+. ++.++.+|+.+. + .+++||.|++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----~--~~~~fD~Vi~ 107 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----V--EFRPFDVVVS 107 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----c--cCCCeeEEEE
Confidence 35789999999999999999863 358999999876665443 3344 688899987653 2 3678999998
Q ss_pred eCCCCCCCCchh---------------hhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCc
Q 021567 201 QCPNPDFNRPEH---------------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 201 ~fpdP~~k~~h~---------------krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~ 259 (311)
+-| +...... ........+++++.++|||||.+++............+.+++.++..
T Consensus 108 npP--y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 108 NPP--YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA 179 (223)
T ss_pred CCC--CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence 733 2211000 00112357889999999999999986433323456677777777653
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=101.33 Aligned_cols=123 Identities=14% Similarity=0.083 Sum_probs=80.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh--hhhh-ccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--RSIV-ASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll--~~~~-~~~~~s~D~V~i 200 (311)
.+.+|||||||+|.++..++++. +..+++|+|+++.. ...++.++++|+.+.. .... ..+++.+|.|+.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 46789999999999999999885 56789999998743 2357899999987531 1110 013668999998
Q ss_pred eCCCCC---CCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 201 QCPNPD---FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 201 ~fpdP~---~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
+.+.+. +.-.|.......+.+++.+.++|+|||.+++......-...+.+.+..
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~ 161 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK 161 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh
Confidence 754220 001111111122588999999999999999965332223334444444
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.4e-10 Score=97.39 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=87.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc--EEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN--GYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N--v~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.++||+|||+|.++..++++ +.+++|+|+++.+.+.+ ...+..+ +.++++|+.+. + .+..+|.|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~d~v 94 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F--RGDKFDVI 94 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c--cccCceEE
Confidence 4568999999999999999988 68999999876655544 3445555 89999997653 2 24589999
Q ss_pred EEeCCCCCCC-C-c---------hh--hhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 199 SIQCPNPDFN-R-P---------EH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 199 ~i~fpdP~~k-~-~---------h~--krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
+.+.|--... . . +. ..+...+.+++++.++|+|||.+++......-.+.+.+.+.+.|+...
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAE 169 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeee
Confidence 8874311000 0 0 00 001123578999999999999988765433234567778888887644
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-10 Score=114.38 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=95.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
..+|||||||+|.+++.+++..|+.+++|+|+++.|++.++ ..++ .++.++++|+.+. + .++.||.|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~----~--~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN----I--EKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh----C--cCCCccEEEE
Confidence 35899999999999999999999999999999877666554 3455 3699999997543 2 3568999998
Q ss_pred eCCCCCCCCch------------hhhh--------hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPE------------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h------------~krR--------l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
|- |+..... +... .....+++++.++|+|||.+++.+.. ...+.+.+.+.+.|+...
T Consensus 213 NP--PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-~q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 213 NP--PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-KQEEAVTQIFLDHGYNIE 289 (506)
T ss_pred CC--CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-chHHHHHHHHHhcCCCce
Confidence 73 2222100 0000 12357888999999999999998754 356677788888888766
Q ss_pred eeecc
Q 021567 261 VLVQD 265 (311)
Q Consensus 261 ~~~~d 265 (311)
.+.+|
T Consensus 290 ~~~~D 294 (506)
T PRK01544 290 SVYKD 294 (506)
T ss_pred EEEec
Confidence 56555
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=101.90 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=70.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||||||+|.++..+|++ +..|+|+|+++.+++.++ ..++ ++.+..+|+... + .++++|.|+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~-----~-~~~~fD~I~~~ 101 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAA-----A-LNEDYDFIFST 101 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhc-----c-ccCCCCEEEEe
Confidence 468999999999999999986 579999999877666543 3455 377777776543 2 14579999876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+-.+... -..+.++++++++|+|||.+++.
T Consensus 102 ~~~~~~~~------~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 102 VVFMFLQA------GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cccccCCH------HHHHHHHHHHHHHhCCCcEEEEE
Confidence 44222111 11258999999999999996654
|
Part of a tellurite-reducing operon tehA and tehB |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.8e-11 Score=101.33 Aligned_cols=123 Identities=18% Similarity=0.282 Sum_probs=88.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc-EEEEEccccchhhhhhc------cCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN-GYFIATNATSTFRSIVA------SYPG 193 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N-v~f~~~Da~~ll~~~~~------~~~~ 193 (311)
+.++|||+|||+|.++..|++..-....+|+|.++.|.+.| ++.+.+| ++|.+.|+.+- ..++ ...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFLSGQFDLVLDKG 144 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cccccceeEEeecC
Confidence 45699999999999999999984345699999987766554 4567777 99999999873 1110 0235
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCc
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~ 259 (311)
++|.|.+. ||-- . .|+ ..++..+.+.|+|||+|++ |.+.....++++.++..++..
T Consensus 145 T~DAisLs-~d~~-~----~r~---~~Y~d~v~~ll~~~gifvI-tSCN~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 145 TLDAISLS-PDGP-V----GRL---VVYLDSVEKLLSPGGIFVI-TSCNFTKDELVEEFENFNFEY 200 (227)
T ss_pred ceeeeecC-CCCc-c----cce---eeehhhHhhccCCCcEEEE-EecCccHHHHHHHHhcCCeEE
Confidence 55555553 4431 1 111 2567788899999999998 456667889999999887653
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=108.90 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=97.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-----------CCCcEEEEEccccchhhhhhccCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----------GITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-----------~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
...+||+||||+|..+..+.+..+..++++||+++..++.|+.. ..++++++.+|+.+.+.. .++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----~~~ 225 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----PSS 225 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----cCC
Confidence 45799999999999988888765667999999988877777641 235799999999987542 367
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH----HHHHHHHHhcCCC
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM----LRMKQQFLEYGKG 258 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~----~~~~~~l~~~g~~ 258 (311)
.+|+|++.+|||.-. .-.++...+|++.+++.|+|||++++...+..+. ..+.+.+++.++.
T Consensus 226 ~YDVIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~ 291 (374)
T PRK01581 226 LYDVIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLT 291 (374)
T ss_pred CccEEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCc
Confidence 899999999988521 1235666899999999999999999887655433 3345666776553
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-11 Score=99.39 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=73.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..+|||||||+|.++..+++.. .+++|+|+++.+.+. .++.....+.... +.+++++|.|+++..-
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK------RNVVFDNFDAQDP-----PFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH------TTSEEEEEECHTH-----HCHSSSEEEEEEESSG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh------hhhhhhhhhhhhh-----hccccchhhHhhHHHH
Confidence 57899999999999999998773 499999999888776 3444544444433 2247899999988543
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
.+..+ -..++++++++|||||.+++.+...
T Consensus 89 ~~~~d--------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 89 EHLPD--------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp GGSSH--------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhccc--------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 33221 1589999999999999999987543
|
... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-11 Score=110.59 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=74.0
Q ss_pred CCeEEEEeccccH----HHHHHHhhCC-----CCeEEEEchHHHHHHHHHHcC--------C------------------
Q 021567 126 QPLVVDIGSGNGL----FLLGMARKRK-----DLNFLGLELVTHCRDSLQLSG--------I------------------ 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~----~~~~lA~~~p-----~~~vvGiDi~~~a~~~a~~~~--------~------------------ 170 (311)
..+|+|+|||||. +++.+++..+ +..++|+|+++.++++|++.- +
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4689999999997 4555566544 578999999999998886431 0
Q ss_pred -----CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 171 -----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 171 -----~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+|.|.++|+.+. +.+++.||.|+....-.++.. -...+++++++++|+|||.+++.
T Consensus 180 ~~~ir~~V~F~~~dl~~~-----~~~~~~fD~I~crnvl~yf~~------~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 180 KPELKERVRFAKHNLLAE-----SPPLGDFDLIFCRNVLIYFDE------PTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ChHHhCcCEEeeccCCCC-----CCccCCCCEEEechhHHhCCH------HHHHHHHHHHHHHhCCCeEEEEE
Confidence 3689999998875 324788999976422111111 01248999999999999999985
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=103.77 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=73.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+++.. ++.+++|+|+++.. .++++..+..|+.++++|+.... ..++.||.|+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-----~~~~~fD~I~ 150 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-----EENAPYDRIY 150 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-----CcCCCcCEEE
Confidence 46799999999999999999874 45799999976544 44455567789999999987652 1457899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-+ .+.+.+.+.|||||++++..
T Consensus 151 ~~~~~~--------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 151 VTAAGP--------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ECCCcc--------------cchHHHHHhhCCCcEEEEEE
Confidence 875422 23356677899999998854
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.19 E-value=9e-11 Score=105.16 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=84.5
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+|||||||+|.++..+++.+|+.+++|+|++..+.+.++ ..++ .++.++.+|+... + .+++||.|+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-----~-~~~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-----P-FPDTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-----C-CCCCCCEeehHH
Confidence 599999999999999999998899999998766554443 3454 4689999998654 2 145899997542
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH------------H---HHHHHHHHHHhcCCCcee
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE------------E---VMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~------------~---~~~~~~~~l~~~g~~~~~ 261 (311)
.-.+..+ .+.++++++++|+|||.+++..-.. . ...+..+.+.+.|+....
T Consensus 76 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 76 VIHHIKD--------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred HHHhCCC--------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 2111111 1489999999999999999853110 0 123455677788876543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=106.41 Aligned_cols=123 Identities=13% Similarity=0.110 Sum_probs=91.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---------CCCcEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------GITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---------~~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
+..+||+||||+|.++..++++.+..++++||+++..++.+++. .-++++++.+|+...+.. .++.+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE----TENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----CCCcc
Confidence 45789999999999999999765567999999877666655431 135799999999987542 46789
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
|+|++..++|+... ..+...+|++.+++.|+|||.+++.+.+ ......+.+.+.+.
T Consensus 152 DvIi~D~~dp~~~~----~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~ 211 (283)
T PRK00811 152 DVIIVDSTDPVGPA----EGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV 211 (283)
T ss_pred cEEEECCCCCCCch----hhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 99999988886221 2355679999999999999999987543 23344445555554
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=109.79 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=73.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH---H--cCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ---L--SGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~---~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..++...+ ..++|+|.+..++..++ + ....++.+..+++.++ + ...+||.|+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-----p-~~~~FD~V~ 193 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-----H-ELYAFDTVF 193 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-----C-CCCCcCEEE
Confidence 467999999999999999998865 37999998776554321 1 1235788899988776 3 235899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-.+..+ -..+|++++++|+|||.|++.+
T Consensus 194 s~gvL~H~~d--------p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 194 SMGVLYHRKS--------PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EcchhhccCC--------HHHHHHHHHHhcCCCCEEEEEE
Confidence 7643222111 1479999999999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=109.04 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=81.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||||||+|.++..+++++|+..++++|+++.|++.++ .+++ ...++.+|+... .++.||.|+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-------~~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-------IKGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-------cCCCccEEEEC
Confidence 45899999999999999999999999999999877766554 3444 356777776432 25789999998
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-HHHHHHHHHH
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQ 251 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~~~~~~~~~~ 251 (311)
.|-.+ ..... .....++++++.+.|+|||.+++.... .+|...+.+.
T Consensus 269 PPFH~--g~~~~-~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~ 316 (342)
T PRK09489 269 PPFHD--GIQTS-LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDET 316 (342)
T ss_pred CCccC--Ccccc-HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHH
Confidence 54221 11000 012368999999999999999987643 4455444433
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=102.01 Aligned_cols=96 Identities=10% Similarity=0.112 Sum_probs=73.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHH----HHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~----~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||||||+|..+..+++..+ ..+++|+|+++.+.+ +++..+.. +++++.+|+.+.+ + ...+||.|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL----E-KHAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC----c-cCCCccEE
Confidence 457999999999999999998753 569999998765444 44445654 5999999997652 2 35689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++...-+ .+.+++.+.|+|||++++..
T Consensus 147 i~~~~~~--------------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 147 IVTAAAS--------------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEccCcc--------------hhhHHHHHhcCcCcEEEEEE
Confidence 9885533 33467889999999998853
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.5e-10 Score=104.30 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=73.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+..++||||||+|.+++.+++++|+.+++++|+ .+.+.+++++.++ ++++++.+|+.+. .+ ++ .|.|++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~---~~--~~--~D~v~~ 221 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE---SY--PE--ADAVLF 221 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCC---CC--CC--CCEEEe
Confidence 357999999999999999999999999999996 3455566666666 4699999998753 12 22 477765
Q ss_pred eCCCC-CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP-~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...-. |.. -....++++++++|+|||++++.
T Consensus 222 ~~~lh~~~~-------~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 222 CRILYSANE-------QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EhhhhcCCh-------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 43211 110 01147899999999999999885
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-10 Score=108.14 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=86.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++..+||+|||||.+++.++.. +..++|+|++..+++ +++..+++++.++++|+.++ +..++++|.|++
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l-----~~~~~~~D~Iv~ 254 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL-----PLSSESVDAIAT 254 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC-----CcccCCCCEEEE
Confidence 4678999999999999987764 679999998665544 45556777899999999886 334689999998
Q ss_pred eCCCCCCCCc---hhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCC
Q 021567 201 QCPNPDFNRP---EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 257 (311)
Q Consensus 201 ~fpdP~~k~~---h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~ 257 (311)
+-| +-... .+.......+++++++++|+|||++.+.+.... .+.+.++..|+
T Consensus 255 dPP--yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~ 309 (329)
T TIGR01177 255 DPP--YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR 309 (329)
T ss_pred CCC--CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc
Confidence 833 21110 000112346899999999999999988764432 33455667776
|
This family is found exclusively in the Archaea. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7e-10 Score=103.41 Aligned_cols=123 Identities=19% Similarity=0.269 Sum_probs=87.4
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 121 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 121 f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
++......|||+|||.|-+++.+|+.+|+..++-+|++..|++.+ +.++.+|..+...|..+- -.++||
T Consensus 154 l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-------v~~kfd 226 (300)
T COG2813 154 LPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-------VEGKFD 226 (300)
T ss_pred CCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------cccccc
Confidence 333335589999999999999999999999999999876666555 446677766667775443 134999
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC-cHHHHHHHHHHHH
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFL 253 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD-~~~~~~~~~~~l~ 253 (311)
.|++| +| +...+.--..+-.+++++..+.|++||.|.+... ..+|...|.+.|.
T Consensus 227 ~IisN--PP-fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 227 LIISN--PP-FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred EEEeC--CC-ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 99988 34 3332221111225999999999999999999764 3455555555544
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-10 Score=102.51 Aligned_cols=122 Identities=9% Similarity=0.036 Sum_probs=87.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----C-CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----G-ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
....|||||||+|.++..+++..|+.+++++|+.+..++.+++. + .++++++.+|+.+.+.. .+..+|.|+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----~~~~yD~I~ 141 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----HRHSTDVIL 141 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----CCCCCCEEE
Confidence 35689999999999999999999999999999988777766543 2 25799999999887542 246899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe-CcHHHHHHHHHHHHh
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLE 254 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-D~~~~~~~~~~~l~~ 254 (311)
+...++. ..-..+...+|++++.++|+|||++.+.. .........++.+.+
T Consensus 142 ~D~~~~~----~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~ 193 (262)
T PRK04457 142 VDGFDGE----GIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLES 193 (262)
T ss_pred EeCCCCC----CCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHH
Confidence 8642221 00012334799999999999999999842 222233344444544
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-10 Score=101.73 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=80.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||||||+|.+++.+++..+ ..++|+|+++.+++.+++ +++ .++.+.. .+.+||.|+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~-------------~~~~fD~Vv 184 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQ-------------GDLKADVIV 184 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc-------------CCCCcCEEE
Confidence 467999999999999988777643 469999998776666543 333 1222111 123789998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.+.... ....+++++.++|||||.++++.-.....+.+.+.+.++|+.....
T Consensus 185 ani~~~-----------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 185 ANILAN-----------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred EcCcHH-----------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 774211 1247899999999999999997655556677888888998865543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-10 Score=111.80 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=96.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHHHHHHHHHc-----------CCCcEEEEEccccchhhhhhccCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLS-----------GITNGYFIATNATSTFRSIVASYP 192 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~a~~~a~~~-----------~~~Nv~f~~~Da~~ll~~~~~~~~ 192 (311)
+..+|||||||+|..+..++++ |. .+++++|+++...+.++++ ..++++++.+|+.+.+.. .+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----LA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----CC
Confidence 4578999999999999999875 54 7999999988777777652 125799999999987542 35
Q ss_pred CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhcCC
Q 021567 193 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGK 257 (311)
Q Consensus 193 ~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~g~ 257 (311)
+++|.|++++|+|+... ..++..++|++.+.+.|+|||.+.+++.. .+.+..+.+.+++.|+
T Consensus 372 ~~fDvIi~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCEEEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 78999999999886321 12456679999999999999999987542 3344566777888776
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-10 Score=105.59 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=72.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||||||+|.++..+|+. +.+|+|+|+++.+++.+ +..++ ++.+...|+... + .+++||.|+..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~-----~-~~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSA-----S-IQEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcc-----c-ccCCccEEEEc
Confidence 358999999999999999986 57999999987766554 34456 789988887654 2 26789999876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+.-.+... -..+.+++++.++|+|||.+++.
T Consensus 192 ~vl~~l~~------~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 192 VVLMFLNR------ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred chhhhCCH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 43221110 01258999999999999996664
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=101.02 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=82.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||+|||+|.+++.+++. ...+++|+|+++.+++.++ .+++. ++.+..++.... .++.||.|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-------~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-------IEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-------cCCCceEEE
Confidence 4689999999999999988875 3468999998776665554 34543 366666653221 367899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
.+.... ....++.++.++|+|||.++++.-.....+.+.+.+++. +...
T Consensus 231 an~~~~-----------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 231 ANILAE-----------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred EecCHH-----------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence 875311 114789999999999999999765555566667767665 5433
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=101.39 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=86.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++.+|||+|||+|.++..+|+.. +...|+++|+++++.+.+.. ...+||.++.+|+..... +.....++|.|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~--y~~~~~~vDvV~~D 209 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQK--YRMLVPMVDVIFAD 209 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhh--hhcccCCCCEEEEe
Confidence 46799999999999999999984 46689999998764433221 123799999999875311 11124579999988
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-----eCc----HHHHHHHHHHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-----SDI----EEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-----tD~----~~~~~~~~~~l~~~g~~~~ 260 (311)
...|+ + ...++.++.+.|||||.|++. +|. +..+.+-++.+++.++..+
T Consensus 210 va~pd-----q-----~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~ 267 (293)
T PTZ00146 210 VAQPD-----Q-----ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPK 267 (293)
T ss_pred CCCcc-----h-----HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceE
Confidence 76664 1 125667899999999999985 222 2223333477888888754
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=101.37 Aligned_cols=124 Identities=13% Similarity=0.018 Sum_probs=91.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..+|||+|||+|.+++.++++.+..+++|+|+++.+++.++++ .+++.++++|+.++. .+.+||.|+++- |
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-~~~v~~v~~D~~e~~------~~~kFDlIIsNP--P 135 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-LPEAEWITSDVFEFE------SNEKFDVVISNP--P 135 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-CcCCEEEECchhhhc------ccCCCcEEEEcC--C
Confidence 4689999999999999999887778999999999998887654 568999999998761 256899999983 3
Q ss_pred CCCCchh--hh--hh----------hHHHHHHHHHhcccCCeEEEEEeCcHHHH------HHHHHHHHhcCCC
Q 021567 206 DFNRPEH--RW--RM----------VQRSLVEAVSDLLVHDGKVFLQSDIEEVM------LRMKQQFLEYGKG 258 (311)
Q Consensus 206 ~~k~~h~--kr--Rl----------~~~~~l~~i~rvLkpGG~l~~~tD~~~~~------~~~~~~l~~~g~~ 258 (311)
+...... +. +. .-.+++.....+|+|+|.+.+.-+..+++ .+....++++|+.
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 3321111 11 11 12578899999999999998876665553 3445667777763
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-10 Score=111.85 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=78.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.++||||||+|.++..+++.. .+++|+|++..+++.++.. ..+|+.++++|+... . ++.+++++|.|++++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~-~--~~~~~~~fD~I~~~~ 111 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSP-D--LNISDGSVDLIFSNW 111 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccc-c--cCCCCCCEEEEehhh
Confidence 35689999999999999999874 5899999988887766432 246899999999643 1 234578999999876
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+-.+.... ....++++++++|||||.+++.
T Consensus 112 ~l~~l~~~------~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 112 LLMYLSDK------EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hHHhCCHH------HHHHHHHHHHHhcCCCeEEEEE
Confidence 53332111 1148999999999999999884
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=94.94 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=103.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||+|||.|.++..|.+. .+....|||++......+.++|+ .++++|+++-+.. | ++++||.|+++-.-
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rGv---~Viq~Dld~gL~~-f--~d~sFD~VIlsqtL 85 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARGV---SVIQGDLDEGLAD-F--PDQSFDYVILSQTL 85 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcCC---CEEECCHHHhHhh-C--CCCCccEEehHhHH
Confidence 5789999999999999999875 58999999999888888777765 5899999987553 3 69999999876211
Q ss_pred CCCCCchhhhhhhH-HHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCCCCC-
Q 021567 205 PDFNRPEHRWRMVQ-RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSF- 282 (311)
Q Consensus 205 P~~k~~h~krRl~~-~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~~~- 282 (311)
++ +.+ ...|+++.|+ |...+++.-+-.|...-...+ -.|.-.. ++. + +-.|...++-
T Consensus 86 ------Q~---~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~-~~GrmPv--t~~-l-----Py~WYdTPNih 144 (193)
T PF07021_consen 86 ------QA---VRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLL-LRGRMPV--TKA-L-----PYEWYDTPNIH 144 (193)
T ss_pred ------Hh---HhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHH-hcCCCCC--CCC-C-----CCcccCCCCcc
Confidence 11 111 3778888666 667777666655544334333 2333221 111 0 1234433322
Q ss_pred -CCCCHHHHHHHHcCCCeEEEEEEe
Q 021567 283 -GVRSDWEQHVIDRGAPMYRLMLSK 306 (311)
Q Consensus 283 -~~~T~yE~~~~~~G~~i~~~~~~k 306 (311)
-....||....+.|..|-+-.+..
T Consensus 145 ~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 145 LCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred cccHHHHHHHHHHCCCEEEEEEEEc
Confidence 234679999999999997766544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.1e-10 Score=103.86 Aligned_cols=103 Identities=11% Similarity=0.115 Sum_probs=74.8
Q ss_pred CCCeEEEEeccccHH--HHHHHhhCCCCeEEEEchHHHHHHHHHH-----cCCC-cEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLF--LLGMARKRKDLNFLGLELVTHCRDSLQL-----SGIT-NGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~--~~~lA~~~p~~~vvGiDi~~~a~~~a~~-----~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|+|||||.|.+ ++.++...|+..++|+|+++.+.+.|++ .++. ++.|..+|+.+.. + ..+.||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~----~-~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT----E-SLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc----c-ccCCcC
Confidence 457899999998844 3444556899999999987766655542 3554 5999999998751 1 246799
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|++..--.|-+. ...++++.+++.|+|||.+++.+
T Consensus 198 lVF~~ALi~~dk~-------~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLAALVGMDKE-------EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEecccccccc-------cHHHHHHHHHHhcCCCcEEEEec
Confidence 9988732222111 11489999999999999999986
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-10 Score=104.41 Aligned_cols=109 Identities=11% Similarity=0.112 Sum_probs=72.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHHHc---CC--CcEEEEEccccchhhhhhccC-CCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLS---GI--TNGYFIATNATSTFRSIVASY-PGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~~~---~~--~Nv~f~~~Da~~ll~~~~~~~-~~s~D~V 198 (311)
+..|||+|||||..+..|++..+ ..+|+|+|+|+.+++.+.++ .. -++.++++|..+.++- .+.. +.....+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEEE
Confidence 56899999999999999999876 58999999988776665432 12 2577899998774321 1101 1122233
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
++..+..++.. .....+|++++++|+|||.|++..|.
T Consensus 143 ~~gs~~~~~~~------~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 143 FPGSTIGNFTP------EEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EecccccCCCH------HHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 32222222211 11248999999999999999986653
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=96.78 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=73.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
....|||||||+|.++..+++..|..+++|+|+++.+++.+++. ..++.+.++|+.+. + ++++||.|+++..-
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~-~~~~~~~~~d~~~~----~--~~~sfD~V~~~~vL 115 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY-LPNINIIQGSLFDP----F--KDNFFDLVLTKGVL 115 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh-CCCCcEEEeeccCC----C--CCCCEEEEEECChh
Confidence 35679999999999999999988889999999999999988654 35788889987652 2 57899999876432
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
.+.. + -....+++++.|++ ++.+++
T Consensus 116 ~hl~-p-----~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 116 IHIN-P-----DNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred hhCC-H-----HHHHHHHHHHHhhc--CcEEEE
Confidence 1110 0 01147889999987 445555
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-10 Score=104.46 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=75.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC----C--C----cEEEEEccccchhhhhhccCCCcE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG----I--T----NGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~----~--~----Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
+..|||+|||+|-++..||+. +++|+|||.++.+.+.|+.+. . . .+++.+.|++.. .+.|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--------~~~f 159 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--------TGKF 159 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--------cccc
Confidence 467999999999999999998 589999998877776665431 0 1 266777777765 3448
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHH
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLR 247 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~ 247 (311)
|.|+..-.- +|-+ .-++|++.+.+.|||||.+++.|-++....+
T Consensus 160 DaVvcsevl------eHV~--dp~~~l~~l~~~lkP~G~lfittinrt~lS~ 203 (282)
T KOG1270|consen 160 DAVVCSEVL------EHVK--DPQEFLNCLSALLKPNGRLFITTINRTILSF 203 (282)
T ss_pred ceeeeHHHH------HHHh--CHHHHHHHHHHHhCCCCceEeeehhhhHHHh
Confidence 999765211 1100 0159999999999999999999876654433
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-10 Score=107.85 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=73.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++.+|||||||+|.++..+|+.. +.+++|+|+++.+++.++++.. .++++..+|..++ +++||.|+....
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l--------~~~fD~Ivs~~~ 237 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL--------NGQFDRIVSVGM 237 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc--------CCCCCEEEEeCc
Confidence 46799999999999999999875 5799999999888777754321 2578888886543 467898875422
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
-.+.... ..+.+++++.++|||||.+++.+
T Consensus 238 ~ehvg~~------~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 238 FEHVGPK------NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhhCChH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence 1111000 11488999999999999999864
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=97.33 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=91.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP- 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp- 203 (311)
....|||||||||..+..|... +..++|+|+|..+++.+.+..+. -.++.+|.-.- +|+.+++||.+++.-.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~G----lpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-GDLILCDMGEG----LPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCC----CCCCCCccceEEEeeee
Confidence 4679999999999999999865 57899999999998888765443 45777776543 4678999998864321
Q ss_pred ----CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe--CcHHHHHHHHHHHHhcCC
Q 021567 204 ----NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQFLEYGK 257 (311)
Q Consensus 204 ----dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t--D~~~~~~~~~~~l~~~g~ 257 (311)
+......++++|+ ..|+..++.+|++|++.+++. .+....+.+..+....||
T Consensus 123 QWLcnA~~s~~~P~~Rl--~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRL--LRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred eeecccCccccChHHHH--HHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 2222334567777 489999999999999998874 445556666666666664
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=97.91 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=72.9
Q ss_pred CCCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHHHHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...+|||||||+|.++..|++. .|+.+++|+|+++.+++.+++.. ..++.+...++..+ +..++++|.|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l-----~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDEL-----VAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccc-----cccCCCccEEE
Confidence 4578999999999999998863 45679999999999988886542 34678888777665 33578999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+++.-.++.+. ....++++++++++ |.+++
T Consensus 135 ~~~~lhh~~d~------~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 135 SNHFLHHLDDA------EVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred ECCeeecCChH------HHHHHHHHHHHhcC--eeEEE
Confidence 87643332211 11479999999998 44444
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=9e-10 Score=96.94 Aligned_cols=106 Identities=11% Similarity=0.173 Sum_probs=74.7
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 121 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 121 f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+++....+||+|||.|.++..||.+. ..++++|+++.|++.+++ .+.+||+++++|+... . +++.||+|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~----~--P~~~FDLI 110 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF----W--PEGRFDLI 110 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------SS-EEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC----C--CCCCeeEE
Confidence 344345789999999999999999995 589999999999998875 3568999999998665 2 48999999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.-.--+..... .-..+++.+...|+|||.+++.+
T Consensus 111 V~SEVlYYL~~~~-----~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 111 VLSEVLYYLDDAE-----DLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES-GGGSSSHH-----HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEehHhHcCCCHH-----HHHHHHHHHHHHhCCCCEEEEEE
Confidence 8762221111111 11478899999999999999975
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-09 Score=100.70 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=90.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------C--CCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..+||+||||.|..+..+++..+..+++.+|+.+...+.+++. + -++++++.+|+...+... +++.+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~---~~~~yD 167 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA---PEGTYD 167 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc---cCCCCC
Confidence 45789999999999999998764346899999866555544331 2 247999999998875431 357899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
+|++..++|+.. ...+..++|++.++++|+|||.+..+..+ ......+.+.+.+.
T Consensus 168 vIi~D~~dp~~~----~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~ 226 (308)
T PLN02366 168 AIIVDSSDPVGP----AQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET 226 (308)
T ss_pred EEEEcCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH
Confidence 999998888632 23466789999999999999999886554 33344455555554
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-10 Score=102.01 Aligned_cols=147 Identities=13% Similarity=0.160 Sum_probs=95.8
Q ss_pred hhhhhhhhhhccCCC----chhhhhhCCCchhhHhhcCCCCC--CeEEEEeccccHHHHHHHhhCCC--CeEEEEchHHH
Q 021567 89 GSAVWEFLKGRMLPG----VSALDRAFPFDIDWSAAYHDPAQ--PLVVDIGSGNGLFLLGMARKRKD--LNFLGLELVTH 160 (311)
Q Consensus 89 ~a~~wd~~~~r~~~~----~~~l~~~~~~~~~~~~~f~~~~~--~~vLDIGcGtG~~~~~lA~~~p~--~~vvGiDi~~~ 160 (311)
.+.+||.+...+..- .+.+++.+ .+.++-.+. ..|||||||.|.....+.+..|+ ..+.+.|.|..
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Ef------pel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~ 108 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREF------PELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR 108 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhh------HHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH
Confidence 678899888765542 23333333 333322122 27999999999999999998777 89999999999
Q ss_pred HHHHHHHcCC---CcEEEEEccccchh-hhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 161 CRDSLQLSGI---TNGYFIATNATSTF-RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 161 a~~~a~~~~~---~Nv~f~~~Da~~ll-~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
|++..+++.. +++.-...|+..-- .. +...+++|.+++.|.-.- -|.. + .+..++.++++|||||.++
T Consensus 109 Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~--~~~~~svD~it~IFvLSA---i~pe-k--~~~a~~nl~~llKPGG~ll 180 (264)
T KOG2361|consen 109 AIELVKKSSGYDESRVEAFVWDLTSPSLKE--PPEEGSVDIITLIFVLSA---IHPE-K--MQSVIKNLRTLLKPGGSLL 180 (264)
T ss_pred HHHHHHhccccchhhhcccceeccchhccC--CCCcCccceEEEEEEEec---cChH-H--HHHHHHHHHHHhCCCcEEE
Confidence 9999876543 23444444443321 11 335789999987763111 1110 0 1478999999999999999
Q ss_pred EEeCcHHHHHHHHHHHH
Q 021567 237 LQSDIEEVMLRMKQQFL 253 (311)
Q Consensus 237 ~~tD~~~~~~~~~~~l~ 253 (311)
+. | |...-+.+++
T Consensus 181 fr-D---Yg~~DlaqlR 193 (264)
T KOG2361|consen 181 FR-D---YGRYDLAQLR 193 (264)
T ss_pred Ee-e---cccchHHHHh
Confidence 96 3 4444444443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=81.29 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=75.5
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+++|+|||+|.++..+++ .+..+++++|+++.+.+.++ .....++.++.+|..+... ...+.+|.|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----EADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----ccCCceEEEEEccc
Confidence 489999999999999998 56789999998776665554 2344679999999887621 13578999988865
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..++ ......+++.+.+.|+|||.+++.
T Consensus 76 ~~~~-------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4331 012358899999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-09 Score=98.93 Aligned_cols=122 Identities=12% Similarity=0.100 Sum_probs=88.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~ 197 (311)
..+|||||||+|.++..+++..+..+++++|+++...+.+++. ..++++++.+|+...+.. .++.+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~~yDv 148 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TENTFDV 148 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCCCccE
Confidence 4589999999999999998876667899999876655554431 124688999999877542 3678999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH----HHHHHHHHHHhc
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----VMLRMKQQFLEY 255 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~----~~~~~~~~l~~~ 255 (311)
|++..++|... ...+...++++.++++|+|||.+++.+.+.. +...+.+.+.+.
T Consensus 149 Ii~D~~~~~~~----~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~ 206 (270)
T TIGR00417 149 IIVDSTDPVGP----AETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA 206 (270)
T ss_pred EEEeCCCCCCc----ccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence 99988777522 2234557999999999999999998765433 333334445443
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-09 Score=104.84 Aligned_cols=114 Identities=16% Similarity=0.301 Sum_probs=81.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..+..+|+.. +...++++|+++. +.+++++.|++|+.++++|+..+.. ..+..+++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~-~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE-LKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc-ccccccccCCEEE
Confidence 46799999999999999999874 4569999998654 4455566788899999999987621 1112357899998
Q ss_pred EeCCC----CCCCCchhhhh--------h--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN----PDFNRPEHRWR--------M--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd----P~~k~~h~krR--------l--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|- -+.+.+..+++ + .+.++|+++.+.|||||.++.+|
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 86441 11111111111 1 14789999999999999998775
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=94.01 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=70.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+..++||||||.|..++.||++ +..|+++|.+..+++++. +.+++ ++....|+.+. . .+..+|.|+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~-----~-~~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF-----D-FPEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB-----S--TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc-----c-ccCCcCEEEE
Confidence 3578999999999999999999 789999999877666543 34554 89999998775 2 2568999875
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-... .|-..+.+++.+...++|||++.+.+
T Consensus 101 t~v~~fL------~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFL------QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS-------GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccC------CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 3221111 11223689999999999999988753
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-09 Score=99.11 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=78.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..+..+|+... ...++++|++..+ .+++++.++.|+.+++.|+..+ +...+.||.|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~-----~~~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF-----GAAVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh-----hhhccCCCEEE
Confidence 467899999999999999998754 4689999986544 4555567888999999998765 11245699998
Q ss_pred EeCCC---------CCCCCchhhhhh-----hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN---------PDFNRPEHRWRM-----VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd---------P~~k~~h~krRl-----~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|- |..+.....+.+ .+.++|+.+.+.|||||+++.+|
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 86331 111100111111 23679999999999999999886
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-09 Score=99.64 Aligned_cols=129 Identities=13% Similarity=0.205 Sum_probs=90.6
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCc-EEEEEccccchhhhhh
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIV 188 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~N-v~f~~~Da~~ll~~~~ 188 (311)
-+.|.+.+.. ++.++||+|||+|.++++.++.. ...++|+|+.+.|.+ +++.++... +.....+....
T Consensus 152 cL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~----- 224 (300)
T COG2264 152 CLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV----- 224 (300)
T ss_pred HHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-----
Confidence 3456666655 57899999999999999999875 357999998665554 444555543 22222222221
Q ss_pred ccCCCcEeEEEEeC-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 189 ASYPGKLILVSIQC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 189 ~~~~~s~D~V~i~f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+ ..+.+|+|+.|- .+| -..+...+.+.|||||.++++---.++.+...+.+.+.|+.....
T Consensus 225 ~-~~~~~DvIVANILA~v------------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 225 P-ENGPFDVIVANILAEV------------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred c-ccCcccEEEehhhHHH------------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 1 246899998873 222 148889999999999999998766777777788888888875543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-10 Score=97.78 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=79.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH----HHHHHHHHcCCCcEE-EEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~~Nv~-f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+||+|||||.....+-- -|...++++|-++ .+.++++++...++. |+.++++++ ++ .+++++|.|+-
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~---l~d~s~DtVV~ 151 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQ---LADGSYDTVVC 151 (252)
T ss_pred ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cc---cccCCeeeEEE
Confidence 45689999999998766543 3678999999654 455556566566777 999999998 22 36999999853
Q ss_pred e---CC--CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc---HHHHHHHHHHHHh
Q 021567 201 Q---CP--NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLE 254 (311)
Q Consensus 201 ~---fp--dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~---~~~~~~~~~~l~~ 254 (311)
. |+ || .+.|+++.|+|+|||+++|--.. ..+...+.++..+
T Consensus 152 TlvLCSve~~-------------~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~e 200 (252)
T KOG4300|consen 152 TLVLCSVEDP-------------VKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAE 200 (252)
T ss_pred EEEEeccCCH-------------HHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhc
Confidence 3 22 33 37899999999999999985322 2344555555444
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-09 Score=94.43 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=72.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||||||+|.++..+++.. .+++++|.++.+. +++++.++.|+.+..+|+...+ + ..+.||.|++
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I~~ 150 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW----P-AYAPFDRILV 150 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC----C-cCCCcCEEEE
Confidence 46799999999999999888874 4799999765444 4444567888999999986541 1 2478999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
..+.+ .+.+.+.+.|+|||.+++...
T Consensus 151 ~~~~~--------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 151 TAAAP--------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ccCch--------------hhhHHHHHhcCCCcEEEEEEc
Confidence 75422 334567899999999998754
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-08 Score=98.17 Aligned_cols=132 Identities=12% Similarity=0.120 Sum_probs=87.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC--cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||+|||+|.+++.++.. ....++++|+++.+++.+ +.++++ +++++++|+.+.+... ......||.|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~-~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY-RDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHH-HhcCCCCCEE
Confidence 3578999999999999887754 345899999876665544 445664 7999999999876432 1124689999
Q ss_pred EEeCCCCCCCCc-hhhhhhh--HHHHHHHHHhcccCCeEEEEEeCc-----HHHHHHHHHHHHhcCCCce
Q 021567 199 SIQCPNPDFNRP-EHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 199 ~i~fpdP~~k~~-h~krRl~--~~~~l~~i~rvLkpGG~l~~~tD~-----~~~~~~~~~~l~~~g~~~~ 260 (311)
+++ .|.+... ....... ..+++....++|+|||.++..|-+ +.+.+.+.+...+.+....
T Consensus 298 ilD--PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~ 365 (396)
T PRK15128 298 VMD--PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_pred EEC--CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 987 2323221 1111111 256777889999999999976532 3344444555566665433
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-09 Score=105.39 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=80.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||+|||+|..++.+++.. ++..++|+|+++.+ .+++++.|++|+.++++|+..+.. .+ +++||.|+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~---~~~fD~Vl 325 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF---AEKFDKIL 325 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh---cccCCEEE
Confidence 45789999999999999999875 67899999986554 445556688889999999987622 12 36899998
Q ss_pred EeCCCC------------CCCCchhhhhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNP------------DFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP------------~~k~~h~krRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|-. |.+....-.++ .+.++|+.+.++|||||.++.+|
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 874411 11111111111 23578999999999999999765
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-09 Score=96.34 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHH----HHHHHHHcCC-CcEEEEEccccchhhhhhcc-CCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGI-TNGYFIATNATSTFRSIVAS-YPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~----a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V 198 (311)
..+|||||||+|..++.+|...| +.+++++|+++. |.+++++.++ ++++++.+|+.+.++.+.+. ++++||.|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 57899999999999999998754 789999998654 4445555676 46999999999886654321 24689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++.-..+ ....+++.+.+.|+|||.+++
T Consensus 149 fiDa~k~-----------~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 149 FVDADKP-----------NYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EECCCHH-----------HHHHHHHHHHHhcCCCeEEEE
Confidence 8863211 125789999999999999886
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=100.75 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=73.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+..+. ..++|+|+++. |.++++..+.+|+.++++|+..... ....+|.|+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-----~~~~fD~Ii 154 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-----EFAPYDVIF 154 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-----ccCCccEEE
Confidence 4579999999999999999998653 57999998665 4445555678899999999876521 246799998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
+.+.-+ ...+.+.+.|+|||.+++..+
T Consensus 155 ~~~g~~--------------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 155 VTVGVD--------------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ECCchH--------------HhHHHHHHhcCCCCEEEEEeC
Confidence 864322 234456789999999988654
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.8e-09 Score=103.47 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=79.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++..|||+|||+|..+..+++..++..++|+|+++.+++.+ ++.++ ++.++++|+.++ ...+ .+++||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~-~~~~--~~~~fD~Vl~ 319 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDP-AQWW--DGQPFDRILL 319 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccc-hhhc--ccCCCCEEEE
Confidence 46799999999999999999988778999999876555444 44555 478999999875 2112 3568999988
Q ss_pred eCCCC------------CCCCchhhhh--hhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNP------------DFNRPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP------------~~k~~h~krR--l~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+-|-. |.+......+ ..+.++++.+.+.|||||.++++|
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 74421 1001000001 124689999999999999999876
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.2e-09 Score=111.79 Aligned_cols=127 Identities=15% Similarity=0.126 Sum_probs=90.7
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC----------------CcEEEEEccccchhhh
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI----------------TNGYFIATNATSTFRS 186 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~----------------~Nv~f~~~Da~~ll~~ 186 (311)
.+|||||||+|.+++.+|+++|+.+++|+|++..|++.++ .+++ ++++|+++|+.+.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-- 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-- 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc--
Confidence 5899999999999999999999899999999877665553 3221 36999999987652
Q ss_pred hhccCCCcEeEEEEeCCCCCCCCch-------h--------------hhhh-----------hHHHHHHHHHhcccCCeE
Q 021567 187 IVASYPGKLILVSIQCPNPDFNRPE-------H--------------RWRM-----------VQRSLVEAVSDLLVHDGK 234 (311)
Q Consensus 187 ~~~~~~~s~D~V~i~fpdP~~k~~h-------~--------------krRl-----------~~~~~l~~i~rvLkpGG~ 234 (311)
+.....||+|+.|=| ...... - .--+ +.++++++..++|+|||.
T Consensus 198 --~~~~~~fDlIVSNPP--YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 198 --RDNNIELDRIVGCIP--QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred --cccCCceEEEEECCC--cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 111236999988732 221100 0 0011 116788899999999999
Q ss_pred EEEEeCcHHHHHHHH-HHHHhcCCCce
Q 021567 235 VFLQSDIEEVMLRMK-QQFLEYGKGKL 260 (311)
Q Consensus 235 l~~~tD~~~~~~~~~-~~l~~~g~~~~ 260 (311)
+++..+.. ..+.+. +.+++.|+...
T Consensus 274 l~lEiG~~-q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 274 MIFNMGGR-PGQAVCERLFERRGFRIT 299 (1082)
T ss_pred EEEEECcc-HHHHHHHHHHHHCCCCee
Confidence 99998754 566777 58888887654
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-09 Score=93.13 Aligned_cols=147 Identities=13% Similarity=0.078 Sum_probs=92.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...++||||||+|.++..+++. +..++|+|+++.++..+++ .+. .++.|.++|+.++ ++++|.|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--------CCCcCEEE
Confidence 3678999999999999999986 4689999998777666543 333 4799999998765 26799887
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCC
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE 279 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~ 279 (311)
....-.++... ....+++++.+++++++.+.+..-. .+. .....+.+. +.. .. . ...
T Consensus 125 ~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~~~~~~-~~~-~~~~~~~~~-~~~--~~-~-----------~~~ 181 (219)
T TIGR02021 125 CMDVLIHYPAS------DMAKALGHLASLTKERVIFTFAPKT-AWL-AFLKMIGEL-FPG--SS-R-----------ATS 181 (219)
T ss_pred EhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEEECCCc-hHH-HHHHHHHhh-CcC--cc-c-----------ccc
Confidence 64221111000 1147889999999988777764322 221 112222221 100 00 0 000
Q ss_pred CCCCCCCHHHHHHHHcCCCeEEEEE
Q 021567 280 NSFGVRSDWEQHVIDRGAPMYRLML 304 (311)
Q Consensus 280 ~~~~~~T~yE~~~~~~G~~i~~~~~ 304 (311)
.....+++++..+.+.|..+.....
T Consensus 182 ~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 182 AYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred eEEecHHHHHHHHHHcCceeeeeec
Confidence 1113467899999999988877663
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.7e-09 Score=102.57 Aligned_cols=109 Identities=17% Similarity=0.090 Sum_probs=79.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||+|||+|..+..+++.. +...++|+|+++.++ +++++.|++|+.++++|+..+ + ++.+||.|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~-----~-~~~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF-----S-PEEQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc-----c-cCCCCCEEE
Confidence 46799999999999999999864 356999999876544 455566788999999999876 1 356899998
Q ss_pred EeCCC---------C---CCCCchhhhhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN---------P---DFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd---------P---~~k~~h~krRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|. | |......-.++ .+..+|..+++.|+|||+++++|
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 76331 1 11010000011 23579999999999999999987
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-09 Score=94.61 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=71.1
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEch----HHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi----~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++.-||.. .+...+++||. .+.|.++++..+..|+.++++|...-++ ..+.||.|+
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-----~~apfD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-----EEAPFDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-----GG-SEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-----cCCCcCEEE
Confidence 4789999999999999999987 45567999995 4566777777788999999999877532 256899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-+. .-..+.+.|++||++++-.
T Consensus 147 v~~a~~~--------------ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 147 VTAAVPE--------------IPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp ESSBBSS----------------HHHHHTEEEEEEEEEEE
T ss_pred Eeeccch--------------HHHHHHHhcCCCcEEEEEE
Confidence 9865431 2234567799999999854
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-09 Score=102.95 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=80.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..+..+|+.. +..+++++|+++..+ +++++.|++|+.++++|+..+ .. ..+++||.|+
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l-~~---~~~~~fD~Vl 312 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL-TE---YVQDTFDRIL 312 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh-hh---hhhccCCEEE
Confidence 46789999999999999999874 567999999876544 445566888899999999876 21 1256899998
Q ss_pred EeCCCC----CCCCchhhhh--------h--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNP----DFNRPEHRWR--------M--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP----~~k~~h~krR--------l--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|.- +.+.+..+++ + .+.++|+.+.+.|||||.++.+|
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 864431 0011111111 1 34688999999999999999876
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.4e-09 Score=93.65 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=74.5
Q ss_pred CCeEEEEeccccHHHHHHHhhC---CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR---KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~---p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+.+|||+|||+|.+++.++++. +..+++|+|+.+.|.+.++++ ..++.++++|+... + .+++||.|+.|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-~~~~~~~~~D~~~~-----~-~~~~FDlIIsN- 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-VPEATWINADALTT-----E-FDTLFDMAISN- 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-ccCCEEEEcchhcc-----c-ccCCccEEEEC-
Confidence 5799999999999999999864 367999999999999888754 45789999998754 2 25689999998
Q ss_pred CCCCCCC--chhhhh----hhHHHHHHHHHhcccCCeE
Q 021567 203 PNPDFNR--PEHRWR----MVQRSLVEAVSDLLVHDGK 234 (311)
Q Consensus 203 pdP~~k~--~h~krR----l~~~~~l~~i~rvLkpGG~ 234 (311)
.|..+. .+.+.| .+...+++.+.+++++|+.
T Consensus 122 -PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 122 -PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred -CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 333321 111112 3346789999997777775
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=89.59 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=74.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.++..+++.. ..++|+|.+..+++.++ ..+..++.+..+|+.+... ..++.+|.|++.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE----KGAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc----CCCCCccEEEeh
Confidence 5689999999999999998864 46999998765555443 3444479999999887621 124789999875
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
..-.+... ...+++++.++|+|||.+++.+.+.
T Consensus 120 ~~l~~~~~--------~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 120 EVLEHVPD--------PQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred hHHHhCCC--------HHHHHHHHHHhcCCCcEEEEEecCC
Confidence 32111111 1478999999999999999876443
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-08 Score=93.82 Aligned_cols=148 Identities=13% Similarity=0.080 Sum_probs=83.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---------CCCcEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------GITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---------~~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
++.+|||||||+|.+++.+++. +.+++|+|+++.+++.++++ +..++.|..+|+.++ +++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--------~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--------SGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--------CCCc
Confidence 3579999999999999999986 57999999988776665432 124688888887543 4678
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCC
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGG 275 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~ 275 (311)
|.|++...-.++... ....+++.+.+ +.+||. ++..........+.+.+.+. +... ..
T Consensus 214 D~Vv~~~vL~H~p~~------~~~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~-~~g~-------------~~ 271 (315)
T PLN02585 214 DTVTCLDVLIHYPQD------KADGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGEL-FPGP-------------SK 271 (315)
T ss_pred CEEEEcCEEEecCHH------HHHHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhh-cCCC-------------Cc
Confidence 887643211110000 01256666665 455555 44332222222222222211 1000 00
Q ss_pred CCCCCCCCCCCHHHHHHHHcCCCeEEEEEE
Q 021567 276 WLGENSFGVRSDWEQHVIDRGAPMYRLMLS 305 (311)
Q Consensus 276 ~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~ 305 (311)
+ ...-.....++++.+.+.|..+.+...+
T Consensus 272 ~-~r~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 272 A-TRAYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred C-ceeeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0 0000123567888999999888765544
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=96.20 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=82.6
Q ss_pred hhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhccC
Q 021567 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 116 ~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~ 191 (311)
.+.+.+.. ++.+|||+|||||-+++..++... .+++|+|+. +.|.++++.+++.+ .+......+. .
T Consensus 153 ~~l~~~~~-~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~-------~ 222 (295)
T PF06325_consen 153 ELLEKYVK-PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL-------V 222 (295)
T ss_dssp HHHHHHSS-TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT-------C
T ss_pred HHHHHhcc-CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc-------c
Confidence 44444443 467999999999999999998753 589999974 45666666777755 3322222222 3
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.+.+|+|+.|.-.+ +-..++..+.+.|+|||.++++---....+.+.+.+.+ |+.....
T Consensus 223 ~~~~dlvvANI~~~-----------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 223 EGKFDLVVANILAD-----------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp CS-EEEEEEES-HH-----------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred cccCCEEEECCCHH-----------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence 58999999883211 11467788899999999999975444556677777765 7765433
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=100.50 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=88.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++..|||+|||+|.+++.+|+.. ..++|+|+++.|++.+ +.++++|+.|+++|+.+.+.. .+..+.++|.|++
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~fD~Vi~ 373 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD-QPWALGGFDKVLL 373 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh-hhhhcCCCCEEEE
Confidence 45789999999999999999884 6899999877665554 445778999999999875422 1123567999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+ .|. .. . .+.++.+.+ ++|++.+|+++|...++..... |.+.||....+
T Consensus 374 d--PPr--~g------~-~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~-L~~~gY~l~~i 422 (443)
T PRK13168 374 D--PPR--AG------A-AEVMQALAK-LGPKRIVYVSCNPATLARDAGV-LVEAGYRLKRA 422 (443)
T ss_pred C--cCC--cC------h-HHHHHHHHh-cCCCeEEEEEeChHHhhccHHH-HhhCCcEEEEE
Confidence 6 232 11 1 255666666 6999999999988777766664 45667765544
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=92.67 Aligned_cols=100 Identities=10% Similarity=0.047 Sum_probs=74.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH-cC---------------CCcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SG---------------ITNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~-~~---------------~~Nv~f~~~Da~~ll~~~~ 188 (311)
.+.+||..|||.|.-+..||++ +..|+|+|+|+.|++.+.+ ++ -.+++++++|..++-..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-- 118 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-- 118 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc--
Confidence 4579999999999999999998 6789999999999988744 11 23789999999887110
Q ss_pred ccCCCcEeEEEE-----eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 189 ASYPGKLILVSI-----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 189 ~~~~~s~D~V~i-----~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...+.||.|+- .+| | -.+.++.+.+.++|+|||.+++.+
T Consensus 119 ~~~~~~fD~VyDra~~~Alp-p----------~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALP-N----------DLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccccCCcCeeeeehhHhcCC-H----------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 011256888752 222 2 123589999999999999988765
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=106.53 Aligned_cols=129 Identities=11% Similarity=0.162 Sum_probs=91.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC--cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT--NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+.+|||+|||||.+++.+|+.. ...|+++|+++.|++.++ .++++ +++++++|+.+.+.. ...+||.|+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~----~~~~fDlIi 613 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE----AREQFDLIF 613 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH----cCCCcCEEE
Confidence 5789999999999999999863 347999999876665554 45664 799999999886542 256899999
Q ss_pred EeCCCCCCCC-ch--hhhhh--hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 200 IQCPNPDFNR-PE--HRWRM--VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 200 i~fpdP~~k~-~h--~krRl--~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
++- |.+.. +. ..... ...++++.+.++|+|||.+++.++...+. ...+.+.+.|+....+
T Consensus 614 lDP--P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~-~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 614 IDP--PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFK-MDEEGLAKLGLKAEEI 678 (702)
T ss_pred ECC--CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC-hhHHHHHhCCCeEEEE
Confidence 872 22211 11 00000 12578889999999999999988665433 3466777777765544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=90.69 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=78.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHH----HHHHHHHHcCC-CcEEEEEccccchhhhhhccC-CCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGI-TNGYFIATNATSTFRSIVASY-PGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~----~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~-~~s~D~V 198 (311)
..+||||||++|..++.+|+..| +.+++.+|..+ .|.+.+++.|+ ++++++.+|+.+.++.+.+.. .+.||.|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 47899999999999999999876 68999999754 45555566676 479999999999877654322 3689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++.-. +. -+..+++.+.+.|+|||.+++
T Consensus 126 FiDa~-----K~------~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 126 FIDAD-----KR------NYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEST-----GG------GHHHHHHHHHHHEEEEEEEEE
T ss_pred EEccc-----cc------chhhHHHHHhhhccCCeEEEE
Confidence 98731 11 235889999999999999987
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.6e-08 Score=98.33 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=85.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|.+++.+|+.. ..++|+|+++.+.+ +++.++++|++|+++|+.+.+... +..+.++|.|++
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~-~~~~~~~D~vi~ 368 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ-PWAGQIPDVLLL 368 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH-HhcCCCCCEEEE
Confidence 35789999999999999999874 58999998665554 444567889999999998764432 123467899987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
.- | ... ....+++.+.+ |+|++.+++++|-..+.. -++.+.+.||....
T Consensus 369 dP--P--r~G------~~~~~l~~l~~-l~~~~ivyvsc~p~tlar-d~~~l~~~gy~~~~ 417 (431)
T TIGR00479 369 DP--P--RKG------CAAEVLRTIIE-LKPERIVYVSCNPATLAR-DLEFLCKEGYGITW 417 (431)
T ss_pred Cc--C--CCC------CCHHHHHHHHh-cCCCEEEEEcCCHHHHHH-HHHHHHHCCeeEEE
Confidence 52 2 111 22577777665 899999999877554444 34456677775443
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-08 Score=94.42 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=81.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||+|||+|.+++.+|+. ...++|+|+++.+++. ++.++++|++|+++|+.++... .++.+|.|+++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----QGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----cCCCCeEEEEC
Confidence 478999999999999999985 5799999987655544 4456788899999999876321 24579999887
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
.| +.. ..+..++.+. .++|++.+|+++|...+.+..... .||...
T Consensus 248 --PP--r~G------~~~~~~~~l~-~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~ 292 (315)
T PRK03522 248 --PP--RRG------IGKELCDYLS-QMAPRFILYSSCNAQTMAKDLAHL---PGYRIE 292 (315)
T ss_pred --CC--CCC------ccHHHHHHHH-HcCCCeEEEEECCcccchhHHhhc---cCcEEE
Confidence 22 111 1124444443 378999999998877776666543 455543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-08 Score=85.25 Aligned_cols=154 Identities=11% Similarity=0.077 Sum_probs=94.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
.+..|||||||+|.++..+++.. ...++|+|+++.+++.++.. ++.++++|+.+.+. +.+++++|.|+++.+-
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~---~~~~~~~d~~~~l~---~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR---GVNVIQGDLDEGLE---AFPDKSFDYVILSQTL 85 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc---CCeEEEEEhhhccc---ccCCCCcCEEEEhhHh
Confidence 35689999999999999998763 56789999998888877653 57889999876321 2357899999887543
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCCC--CC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN--SF 282 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~--~~ 282 (311)
.+..+ ...+++++.|++++ +++..-+..+.......+ ..+... .... + ...|.... .+
T Consensus 86 ~~~~d--------~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~-~~~~~~--~~~~-~-----~~~~~~~~~~~~ 145 (194)
T TIGR02081 86 QATRN--------PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSIL-TKGRMP--VTGE-L-----PYDWYNTPNIHF 145 (194)
T ss_pred HcCcC--------HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHH-hCCccc--cCCC-C-----CccccCCCCccc
Confidence 22211 14778888887654 344443443433222222 121111 1100 0 00121111 23
Q ss_pred CCCCHHHHHHHHcCCCeEEEEEE
Q 021567 283 GVRSDWEQHVIDRGAPMYRLMLS 305 (311)
Q Consensus 283 ~~~T~yE~~~~~~G~~i~~~~~~ 305 (311)
....++.+.+.+.|..+-...+.
T Consensus 146 ~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 146 CTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred CcHHHHHHHHHHCCCEEEEEEEe
Confidence 34566789999999999877665
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-08 Score=87.26 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=72.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.++||+|||+|.+++.++.+. ..+++++|.++.+.+ +++..++.|+.++++|+.+.+.. ...++|.|++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----~~~~fDlV~~ 127 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----PGTPHNVVFV 127 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----cCCCceEEEE
Confidence 35689999999999999765554 368999998765554 44455777899999999876421 2456999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHh--cccCCeEEEEEeC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD 240 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~r--vLkpGG~l~~~tD 240 (311)
+ .|+ ... ..+..++.+.. +|+|+|.+++.+.
T Consensus 128 D--PPy-~~g------~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 128 D--PPF-RKG------LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred C--CCC-CCC------hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 7 333 221 22455665554 4899999999864
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-08 Score=89.25 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=80.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchH----HHHHHHHHHcCCCc-EEEEE-ccccchhhhhhccCCCcEeE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITN-GYFIA-TNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~----~~a~~~a~~~~~~N-v~f~~-~Da~~ll~~~~~~~~~s~D~ 197 (311)
...++||||++.|..++.||...| +.+++.+|.. +.|.+..++.|..+ +.++. +|+.+.+.. ...++||.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~---~~~~~fDl 135 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR---LLDGSFDL 135 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh---ccCCCccE
Confidence 357899999999999999999988 8899999975 45666666778766 88888 699988654 24799999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
|++..- + -.++.+++.+.++|+|||.+++
T Consensus 136 iFIDad-----K------~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 136 VFIDAD-----K------ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEeCC-----h------hhCHHHHHHHHHHhCCCcEEEE
Confidence 988621 1 1237999999999999999986
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=85.48 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=70.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++..+||||||+|.++..++++ ..+++|+|++..+.+.++++ +.+|++++++|+.++ +.++..+|.|+.+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~-----~~~~~~~d~vi~n~ 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF-----DLPKLQPYKVVGNL 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC-----CccccCCCEEEECC
Confidence 3568999999999999999988 57899999988777776543 245899999999887 22345689998874
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhc--ccCCeEEEEEe
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDL--LVHDGKVFLQS 239 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rv--LkpGG~l~~~t 239 (311)
|-. +...++..+.+. +.++|.++++.
T Consensus 86 Py~-----------~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYN-----------ISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred Ccc-----------cHHHHHHHHHhcCCCcceEEEEEEH
Confidence 421 112444444332 45889988864
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-08 Score=85.54 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=94.2
Q ss_pred CCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
..+++|||||+|..+..|++. .|+..+++.|++..|.+. |+.++ -++..+++|...-+ ..+++|++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-~~~~~V~tdl~~~l------~~~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-VHIDVVRTDLLSGL------RNESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-CccceeehhHHhhh------ccCCccEEEE
Confidence 578999999999999999987 688999999998776554 33333 35788999977653 2589999988
Q ss_pred eCCCCCCCCch--------------hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPE--------------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h--------------~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
|=| -.|.... .--|-+..+++.++-.+|.|.|.+|+.+-..+.-+++++.++..|+...
T Consensus 117 NPP-YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 117 NPP-YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVR 189 (209)
T ss_pred CCC-cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccccee
Confidence 722 1111100 0114455789999999999999999987666667788888888887654
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=89.09 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=74.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++..|||||||+|..+.-||+.- .+|+.+|.. +.|.++.+..|+.||.+.++|...-++ +...||.|++
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-----~~aPyD~I~V 144 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-----EEAPYDRIIV 144 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-----CCCCcCEEEE
Confidence 57899999999999999999984 399999964 457777778899999999999987532 3578999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-|. .-+.+.+.|++||++++-.
T Consensus 145 taaa~~--------------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 145 TAAAPE--------------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred eeccCC--------------CCHHHHHhcccCCEEEEEE
Confidence 754332 1123456799999999864
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-08 Score=94.80 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=85.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.++||+|||+|.+++.+|.. ...++|+|++..|++. ++.++++|+.|+++|+.+.+.. ....+|.|+++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~vi~D 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA----QMSAPELVLVN 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh----cCCCCCEEEEC
Confidence 468999999999999999965 4689999987665554 4456778999999999876432 12458998876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.|. . -..+.+++.+.+ ++|++.+|++.|-..++...... .||....+
T Consensus 308 --PPr--~------G~~~~~l~~l~~-~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~ 354 (374)
T TIGR02085 308 --PPR--R------GIGKELCDYLSQ-MAPKFILYSSCNAQTMAKDIAEL---SGYQIERV 354 (374)
T ss_pred --CCC--C------CCcHHHHHHHHh-cCCCeEEEEEeCHHHHHHHHHHh---cCceEEEE
Confidence 232 1 123466777754 79999999999888777777755 56765443
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-08 Score=96.24 Aligned_cols=112 Identities=14% Similarity=0.245 Sum_probs=75.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||+|||+|..+..+|+..++..++|+|++...+ +++++.|++ ++.+..+|+... .... .+++||.|+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~-~~~~--~~~~fD~Vl 314 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP-SQWA--ENEQFDRIL 314 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc-cccc--cccccCEEE
Confidence 46799999999999999999987778999999876544 444555665 244466776543 1111 356899998
Q ss_pred EeCC---------CCCCC---Cchhhhhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCP---------NPDFN---RPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fp---------dP~~k---~~h~krRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-| .|..+ ..+.-.++ .+.++|+++.++|||||.++.+|
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7522 11111 11110111 24689999999999999999875
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.4e-09 Score=92.69 Aligned_cols=106 Identities=14% Similarity=0.175 Sum_probs=72.1
Q ss_pred chhhH-hhcCCCCC-CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEE-------EEccccchh
Q 021567 114 DIDWS-AAYHDPAQ-PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYF-------IATNATSTF 184 (311)
Q Consensus 114 ~~~~~-~~f~~~~~-~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f-------~~~Da~~ll 184 (311)
+.+|- ..+...++ ..++|+|||+|..++.+|..+ .+|+|+|+++.+++.+++. .|+.. ...+..++
T Consensus 20 Ptdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~--~~~~y~~t~~~ms~~~~v~L- 94 (261)
T KOG3010|consen 20 PTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKH--PPVTYCHTPSTMSSDEMVDL- 94 (261)
T ss_pred cHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcC--CCcccccCCccccccccccc-
Confidence 34553 33333233 389999999998888888875 4799999999999988654 22222 22232333
Q ss_pred hhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCe-EEEE
Q 021567 185 RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFL 237 (311)
Q Consensus 185 ~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG-~l~~ 237 (311)
...++|+|+|+.--.-.||.- ++|.++++|+||+.| .+.+
T Consensus 95 ----~g~e~SVDlI~~Aqa~HWFdl---------e~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 95 ----LGGEESVDLITAAQAVHWFDL---------ERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ----cCCCcceeeehhhhhHHhhch---------HHHHHHHHHHcCCCCCEEEE
Confidence 114899999986545556432 699999999999876 5554
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-08 Score=88.41 Aligned_cols=101 Identities=24% Similarity=0.310 Sum_probs=73.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..|||||||+|.++..+++. ..+++|+|+++.+++.+++ .+. ++.+..+|+.+... ..++.+|.|++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAA----EHPGQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhh----hcCCCccEEEE
Confidence 3568999999999999999886 4689999987666555543 233 67888888876621 13578999977
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
...-.+..+ ...+++.+.+.|+|||.+++.+.
T Consensus 121 ~~~l~~~~~--------~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 121 MEMLEHVPD--------PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhHhhccCC--------HHHHHHHHHHHcCCCcEEEEEec
Confidence 532221111 14789999999999999998753
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.7e-08 Score=90.03 Aligned_cols=102 Identities=13% Similarity=0.177 Sum_probs=78.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHH----HHHHHHHHcCCC-cEEEEEccccchhhhhhcc-CCCcEeE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL 197 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~----~a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~-~~~s~D~ 197 (311)
...+|||||||+|..++.+|...| +..++.+|..+ .|.+.+++.|+. +++++.+|+.+.++.+... .+++||.
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 357899999999999999998754 67899999754 455555667775 7999999999987653211 2468999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
|++. .+ +. -...+++.+.+.|+|||.+++
T Consensus 198 VFID---a~--K~------~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 198 AFVD---AD--KR------MYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEEC---CC--HH------HHHHHHHHHHHhcCCCcEEEE
Confidence 9775 32 11 236899999999999999886
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.74 E-value=9e-08 Score=89.51 Aligned_cols=114 Identities=16% Similarity=0.210 Sum_probs=73.1
Q ss_pred hhCCCchhhHhh---cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH------HHHHHHHHcCCCc-EEEEEc
Q 021567 109 RAFPFDIDWSAA---YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT------HCRDSLQLSGITN-GYFIAT 178 (311)
Q Consensus 109 ~~~~~~~~~~~~---f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~------~a~~~a~~~~~~N-v~f~~~ 178 (311)
..|.-...|... .++-.+.+|||||||+|.++.+|+.+.| ..|+|+|-+. .++++. .+.++ +.++-.
T Consensus 96 tEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~--lg~~~~~~~lpl 172 (315)
T PF08003_consen 96 TEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHF--LGQDPPVFELPL 172 (315)
T ss_pred ccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHH--hCCCccEEEcCc
Confidence 334334455433 2233678999999999999999999865 5799999532 223322 22233 444434
Q ss_pred cccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 179 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 179 Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
-++++ |. .+.||.|++.-.--+. +++ -..|.++++.|+|||.+++.|
T Consensus 173 gvE~L-----p~-~~~FDtVF~MGVLYHr--r~P------l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 173 GVEDL-----PN-LGAFDTVFSMGVLYHR--RSP------LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred chhhc-----cc-cCCcCEEEEeeehhcc--CCH------HHHHHHHHHhhCCCCEEEEEE
Confidence 55554 43 6789999754221110 000 278999999999999999976
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=85.21 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=64.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+...|||||||+|.++..+++.. ..++|+|+++.+++.+++ .+. +++.+..+|... .+++||.|+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~fD~v~ 132 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------LLGRFDTVV 132 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------ccCCcCEEE
Confidence 45789999999999999999874 469999987766665543 344 478999998322 257899997
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
....-.++... .....++.+.+.+++++.+.
T Consensus 133 ~~~~l~~~~~~------~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 133 CLDVLIHYPQE------DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EcchhhcCCHH------HHHHHHHHHHhhcCCeEEEE
Confidence 65322111110 11367788888776555444
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=82.21 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=80.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH---cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL---SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~---~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++..|+|+|||||.+++..+-..| ..|+|+|+...|++.+++ ....++.|+.+|+.++ ++.+|.+.+|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~--------~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF--------RGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc--------CCccceEEEC
Confidence 567899999999999999998765 689999986555544432 2456899999999886 5677877777
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
+||=.. +|..+..|+....+.- .++-+.....+.+++.....+.|....
T Consensus 116 --PPFG~~----~rhaDr~Fl~~Ale~s----~vVYsiH~a~~~~f~~~~~~~~G~~v~ 164 (198)
T COG2263 116 --PPFGSQ----RRHADRPFLLKALEIS----DVVYSIHKAGSRDFVEKFAADLGGTVT 164 (198)
T ss_pred --CCCccc----cccCCHHHHHHHHHhh----heEEEeeccccHHHHHHHHHhcCCeEE
Confidence 454221 3335567777666553 222223344466677778888886544
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-08 Score=88.27 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=72.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH-HcCC---------------CcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGI---------------TNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~-~~~~---------------~Nv~f~~~Da~~ll~~~~ 188 (311)
.+.+||..|||.|.-+..||++ +.+|+|+|+|+.|++.+. +++. .+|.+.++|..++-.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~--- 111 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP--- 111 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG---
T ss_pred CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh---
Confidence 4568999999999999999998 679999999999999873 2221 357899999988621
Q ss_pred ccCCCcEeEEEEe---CC-CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 189 ASYPGKLILVSIQ---CP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 189 ~~~~~s~D~V~i~---fp-dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...+.||.|+=. +. +|. .++++.+.++++|+|||.+.+.|
T Consensus 112 -~~~g~fD~iyDr~~l~Alpp~----------~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 112 -EDVGKFDLIYDRTFLCALPPE----------MRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp -SCHHSEEEEEECSSTTTS-GG----------GHHHHHHHHHHCEEEEEEEEEEE
T ss_pred -hhcCCceEEEEecccccCCHH----------HHHHHHHHHHHHhCCCCcEEEEE
Confidence 123579999622 21 221 23699999999999999955543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.6e-07 Score=86.18 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=97.5
Q ss_pred hhhhhhhhhhccCCCch---hhhhhCCCchhhH-----hhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH
Q 021567 89 GSAVWEFLKGRMLPGVS---ALDRAFPFDIDWS-----AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH 160 (311)
Q Consensus 89 ~a~~wd~~~~r~~~~~~---~l~~~~~~~~~~~-----~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~ 160 (311)
.-..||.-.+++-|... .+... ..++. ...+.....++||||||+|.+...++.+.++.+++|+|+++.
T Consensus 73 gl~~wdip~~~LcPpiP~R~~Yi~~---l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~ 149 (321)
T PRK11727 73 GVAHWDIPAGYLCPPIPGRADYIHH---LADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQ 149 (321)
T ss_pred CCCcccCCCCCcCCCCCcHHHHHHH---HHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHH
Confidence 56678888888777651 11110 01111 011111357899999999999999998888999999999766
Q ss_pred HHHHH----HHc-CCC-cEEEEE-ccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh-------hhhhhH--------
Q 021567 161 CRDSL----QLS-GIT-NGYFIA-TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH-------RWRMVQ-------- 218 (311)
Q Consensus 161 a~~~a----~~~-~~~-Nv~f~~-~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~-------krRl~~-------- 218 (311)
|++.| +.+ ++. ++.+++ .|..+++.... ..++.||.|+.| .|++..... +.|-..
T Consensus 150 Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-~~~~~fDlivcN--PPf~~s~~ea~~~~~rk~r~~ar~~~~~~~ 226 (321)
T PRK11727 150 ALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-HKNERFDATLCN--PPFHASAAEARAGSQRKLRNLGLNKDKKKV 226 (321)
T ss_pred HHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc-ccCCceEEEEeC--CCCcCcchhhccchhhHHhhhhccCCCccc
Confidence 55554 445 453 577754 45555433221 135789999988 455443221 101000
Q ss_pred HHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 219 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 219 ~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
-.|-....+++.+||.+.|.. ...++........+|+..-+
T Consensus 227 l~f~g~~~EL~~~GGe~~fi~---~mi~eS~~~~~~~gwftsmv 267 (321)
T PRK11727 227 LNFGGQQAELWCEGGEVAFIK---RMIEESKAFAKQVLWFTSLV 267 (321)
T ss_pred cCCcchhhheeeCCcEeeeeh---HhhHHHHHHHhhCcEEEEEe
Confidence 001123456677999988754 45566666677777764433
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.7e-07 Score=87.40 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=92.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..+||.||+|.|..+..+.+..+..+++.||+.+...+.+++. .-++++++.+|+...+.. .++.+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----RDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----CCCCcc
Confidence 34689999999999999998876677899999877766666532 125799999999998642 467899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHH-HHHhcccCCeEEEEEeCc------HHHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQSDI------EEVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~-~i~rvLkpGG~l~~~tD~------~~~~~~~~~~l~~~ 255 (311)
+|++..+||+-... -.++.+.+|++ .+.+.|+|||.+++..-. ......+.+.+.+.
T Consensus 179 vIi~D~~dp~~~~~--~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v 242 (336)
T PLN02823 179 VIIGDLADPVEGGP--CYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV 242 (336)
T ss_pred EEEecCCCccccCc--chhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh
Confidence 99999888752211 12356679998 899999999999876422 33344555555554
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-07 Score=84.56 Aligned_cols=124 Identities=12% Similarity=0.090 Sum_probs=78.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+||+|||+|++++.++...|+..++++|.++.|++-+ ++.++.+ +..++-+.+.-.....+..++.+|.++.
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 4589999999999999999999999999999988766554 3445543 5555332221100001224688999988
Q ss_pred eCCCCCCCCch------------hhhhhh--------HHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHH
Q 021567 201 QCPNPDFNRPE------------HRWRMV--------QRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 251 (311)
Q Consensus 201 ~fpdP~~k~~h------------~krRl~--------~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~ 251 (311)
| .|..++.. .+-.+. --.+..-+.|.|+|||.+.+.++...-..++...
T Consensus 229 N--PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~ 297 (328)
T KOG2904|consen 229 N--PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRI 297 (328)
T ss_pred C--CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHH
Confidence 7 33332211 110010 1345667789999999999998743333334433
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-07 Score=84.11 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=78.4
Q ss_pred CCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHH----HHHHHHHHcCC-CcEEEEEccccchhhhhhcc--CCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVT----HCRDSLQLSGI-TNGYFIATNATSTFRSIVAS--YPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~----~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~--~~~s~D~ 197 (311)
..+|||||+++|..++.+|+.. ++.+++.+|..+ .|.+..++.|+ ++|+++.+|+.+.++.+.+. .+++||.
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 5789999999999999999875 478999999754 45555566775 57999999999987664321 1368999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
|++. -+ |+ .+..+++.+.+.|+|||.+++
T Consensus 160 iFiD---ad------K~--~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 160 IFVD---AD------KD--NYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEec---CC------HH--HhHHHHHHHHHhcCCCeEEEE
Confidence 9875 22 11 236889999999999999886
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=83.92 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=78.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---------CCC-------------------------
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------GIT------------------------- 171 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---------~~~------------------------- 171 (311)
...+|||||-+|..++.+|+.+-...++|+||....+++|+.+ ...
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 4689999999999999999998888999999876666665432 011
Q ss_pred -----cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe-CcHHHH
Q 021567 172 -----NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVM 245 (311)
Q Consensus 172 -----Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-D~~~~~ 245 (311)
|+.|...+......+++......||.|...-..-|..--|+..=+ .+|+..+++.|.|||+|++.- .|..|.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvEPQpWksY~ 216 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVEPQPWKSYK 216 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence 333333222211111111235678887544333343222221111 589999999999999999963 455554
Q ss_pred H--HHHHHHHhc
Q 021567 246 L--RMKQQFLEY 255 (311)
Q Consensus 246 ~--~~~~~l~~~ 255 (311)
. .+.+.+..+
T Consensus 217 kaar~~e~~~~n 228 (288)
T KOG2899|consen 217 KAARRSEKLAAN 228 (288)
T ss_pred HHHHHHHHhhcC
Confidence 3 333444444
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-08 Score=89.77 Aligned_cols=165 Identities=11% Similarity=0.139 Sum_probs=102.2
Q ss_pred ccchhhhhhhhhhhhhhhhhhh-ccCCCchh-hhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEE
Q 021567 77 SSSIFGLNMVESGSAVWEFLKG-RMLPGVSA-LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLG 154 (311)
Q Consensus 77 ~~s~~~~~~fe~~a~~wd~~~~-r~~~~~~~-l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvG 154 (311)
.+|.++...|+..+..+|.+.- .+.-.... +.+. ........-.++||+|||||-.+..+-.. -...+|
T Consensus 82 pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~em-------I~~~~~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltG 152 (287)
T COG4976 82 PPSAYVETLFDQYAERFDHILVDKLGYSVPELLAEM-------IGKADLGPFRRMLDLGCGTGLTGEALRDM--ADRLTG 152 (287)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH-------HHhccCCccceeeecccCcCcccHhHHHH--HhhccC
Confidence 3456777888888888877642 21111110 1111 01111112468999999999999988766 347899
Q ss_pred EchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeE
Q 021567 155 LELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 234 (311)
Q Consensus 155 iDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~ 234 (311)
+|+|+++++++.++++-. ++.++|+..+++. ..+..+|+|+.-=.-|..-. + +.++--....|+|||.
T Consensus 153 vDiS~nMl~kA~eKg~YD-~L~~Aea~~Fl~~---~~~er~DLi~AaDVl~YlG~------L--e~~~~~aa~~L~~gGl 220 (287)
T COG4976 153 VDISENMLAKAHEKGLYD-TLYVAEAVLFLED---LTQERFDLIVAADVLPYLGA------L--EGLFAGAAGLLAPGGL 220 (287)
T ss_pred CchhHHHHHHHHhccchH-HHHHHHHHHHhhh---ccCCcccchhhhhHHHhhcc------h--hhHHHHHHHhcCCCce
Confidence 999999999998887522 4556777665432 24678898864311111101 0 4788889999999999
Q ss_pred EEEEeCc------------HHHH---HHHHHHHHhcCCCceee
Q 021567 235 VFLQSDI------------EEVM---LRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 235 l~~~tD~------------~~~~---~~~~~~l~~~g~~~~~~ 262 (311)
|.|++.. ..|+ .++...+...|+..+..
T Consensus 221 faFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 221 FAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred EEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 9997521 1221 24556666777765544
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=89.45 Aligned_cols=112 Identities=20% Similarity=0.173 Sum_probs=70.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-----------CC---CcEEEEEccccch-hhhhhc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----------GI---TNGYFIATNATST-FRSIVA 189 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-----------~~---~Nv~f~~~Da~~l-l~~~~~ 189 (311)
.+..|||||||.|.-+.-..... -..++|+|++..+++.|+++ .. -...|+.+|.... +...++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 46899999999998877777654 46899999976555544321 01 2467888887643 122333
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
.....||+|.++|.-... -+... .-+.+|+.++..|+|||+|+..|-+
T Consensus 141 ~~~~~FDvVScQFalHY~--Fese~--~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYA--FESEE--KARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp STTS-EEEEEEES-GGGG--GSSHH--HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccCCCcceeehHHHHHHh--cCCHH--HHHHHHHHHHHhcCCCCEEEEEecC
Confidence 234699999999853221 11111 1157999999999999999987744
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.2e-07 Score=87.32 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=82.5
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccC-----------
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASY----------- 191 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~----------- 191 (311)
..+||++||+|.+++.+|+.. ..++|+|++..|++ +++.++++|+.|+++|+.+.++......
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 479999999999999999875 48999998766554 4445678899999999998765321100
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
...+|.|++. |- ... ..+..++.+.+ |++.+|+++|-..+...+.... + ||....
T Consensus 286 ~~~~D~v~lD---PP-R~G------~~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~ 340 (362)
T PRK05031 286 SYNFSTIFVD---PP-RAG------LDDETLKLVQA---YERILYISCNPETLCENLETLS-Q-THKVER 340 (362)
T ss_pred CCCCCEEEEC---CC-CCC------CcHHHHHHHHc---cCCEEEEEeCHHHHHHHHHHHc-C-CcEEEE
Confidence 1247888764 42 222 23466666655 7999999998877776666543 3 665443
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.7e-07 Score=78.89 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=69.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhhccCCCc-EeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGK-LILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s-~D~V 198 (311)
.+.++||++||+|.+++.++.+.. ..++++|.+..+.+.+ +..+.. +++++++|+...+.... .... +|.|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~--~~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA--KKPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh--ccCCCceEE
Confidence 357899999999999999999864 4899999876655444 445654 69999999977654321 1233 5555
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHH--HhcccCCeEEEEEeC
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSD 240 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i--~rvLkpGG~l~~~tD 240 (311)
++ ||.+... .....++.+ ..+|+++|.+++.++
T Consensus 126 ~~---DPPy~~~------~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 126 YL---DPPFFNG------ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred EE---CcCCCCC------cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 43 3433221 123445544 347999999998764
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.7e-07 Score=78.21 Aligned_cols=112 Identities=19% Similarity=0.252 Sum_probs=75.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCe---------EEEEchHHHHH----HHHHHcCCC-cEEEEEccccchhhhhhcc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLN---------FLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVAS 190 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~---------vvGiDi~~~a~----~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~ 190 (311)
++..+||--||+|.++++.|...++.. ++|.|++..++ ++++..+.. .+.+.+.|+.++ +.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-----~~ 102 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-----PL 102 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-----GG
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-----cc
Confidence 357899999999999999988766666 99999865544 455555654 589999999988 33
Q ss_pred CCCcEeEEEEeCCCCCCCCchh--hhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 191 YPGKLILVSIQCPNPDFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 191 ~~~s~D~V~i~fpdP~~k~~h~--krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
.++++|.|+.+ .||=+.-.. .-+.+.+.+++++.++|++ ..+++.+....+
T Consensus 103 ~~~~~d~Ivtn--PPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~ 155 (179)
T PF01170_consen 103 PDGSVDAIVTN--PPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNREL 155 (179)
T ss_dssp TTSBSCEEEEE----STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCH
T ss_pred ccCCCCEEEEC--cchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHH
Confidence 57899999999 455332111 1234568999999999999 555555655543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-07 Score=82.28 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=69.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP- 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp- 203 (311)
....+||||+|+|.++..+++++|+.+++..|+-. .++.+++ .++++++.+|..+- + +. .|++++...
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~~~~~~--~~rv~~~~gd~f~~----~---P~-~D~~~l~~vL 168 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE-VIEQAKE--ADRVEFVPGDFFDP----L---PV-ADVYLLRHVL 168 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH-HHCCHHH--TTTEEEEES-TTTC----C---SS-ESEEEEESSG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHh-hhhcccc--ccccccccccHHhh----h---cc-ccceeeehhh
Confidence 35689999999999999999999999999999722 2333333 57899999998632 2 23 899887632
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCC--eEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHD--GKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpG--G~l~~~ 238 (311)
..|+. -....+|+.+++.|+|| |+|++.
T Consensus 169 h~~~d-------~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 169 HDWSD-------EDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp GGS-H-------HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hhcch-------HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 22211 11258999999999999 999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=84.23 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=79.3
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhc---c---C-----
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVA---S---Y----- 191 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~---~---~----- 191 (311)
..+||+|||+|.+++.+|+.. ..++|+|++..|++. ++.++++|++|+++|+.+++..... . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 469999999999999999885 489999987655544 4456788999999999987543110 0 0
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHH
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 252 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l 252 (311)
...+|.|++ ||- ... ..+.+++.+.+ |++.+|+++|-..++..+....
T Consensus 277 ~~~~d~v~l---DPP-R~G------~~~~~l~~l~~---~~~ivYvsC~p~tlaRDl~~L~ 324 (353)
T TIGR02143 277 SYNCSTIFV---DPP-RAG------LDPDTCKLVQA---YERILYISCNPETLKANLEQLS 324 (353)
T ss_pred cCCCCEEEE---CCC-CCC------CcHHHHHHHHc---CCcEEEEEcCHHHHHHHHHHHh
Confidence 113687766 452 222 22466676654 8999999998888888777644
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=78.65 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=98.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEch----HHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi----~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|+|-|+|+|.++.++|+. .|..+++-.|+ .+.|++..++.++ +|+.+.+-|+-.. -|...+..+|.|
T Consensus 105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~---GF~~ks~~aDaV 181 (314)
T KOG2915|consen 105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS---GFLIKSLKADAV 181 (314)
T ss_pred CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC---CccccccccceE
Confidence 5789999999999999999998 78889999996 4566777777776 6899999998664 233346789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCe-EEEEEeCcHHHHHHHHHHHHhcCCCceeeecc
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD 265 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG-~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d 265 (311)
++..|.|| ..+-.++.+||.+| +|.--+.+-+.....++.+.+.||-.+..-++
T Consensus 182 FLDlPaPw-------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 182 FLDLPAPW-------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred EEcCCChh-------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 99999999 45556667888766 66555666677778899999999866655433
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-07 Score=77.60 Aligned_cols=73 Identities=10% Similarity=0.023 Sum_probs=55.7
Q ss_pred EEEchHHHHHHHHHHc-------CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHH
Q 021567 153 LGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 225 (311)
Q Consensus 153 vGiDi~~~a~~~a~~~-------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i 225 (311)
+|+|+++.+++.++++ +..|++|+++|++++ |+++++||.|++.|.-.+..++ .++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~v~~~~~l~~~~d~--------~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-----PFDDCEFDAVTMGYGLRNVVDR--------LRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-----CCCCCCeeEEEecchhhcCCCH--------HHHHHHH
Confidence 4899888777766421 135799999999987 5568899999987654433221 4889999
Q ss_pred HhcccCCeEEEEE
Q 021567 226 SDLLVHDGKVFLQ 238 (311)
Q Consensus 226 ~rvLkpGG~l~~~ 238 (311)
+|+|||||.|++.
T Consensus 68 ~rvLkpGG~l~i~ 80 (160)
T PLN02232 68 YRVLKPGSRVSIL 80 (160)
T ss_pred HHHcCcCeEEEEE
Confidence 9999999999874
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.2e-07 Score=79.68 Aligned_cols=127 Identities=11% Similarity=0.142 Sum_probs=93.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CC--CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI--TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||-|.|-|.+++..+++. ..+|+-+|..+.-++.+..+ ++ .++.++.+|+.++.++ | .|.+||.|
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~--~D~sfDaI 209 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-F--DDESFDAI 209 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-C--CccccceE
Confidence 47899999999999999999883 23899999655544444322 22 2589999999998663 3 68999998
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH-------HHHHHHHHHHHhcCCCce
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-------EVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~-------~~~~~~~~~l~~~g~~~~ 260 (311)
.-. .|.+. ..-++-..+|.++++|+|||||+++-.+.+. +......+.+++.||..+
T Consensus 210 iHD--PPRfS---~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 210 IHD--PPRFS---LAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred eeC--CCccc---hhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence 543 23222 1125667899999999999999999876543 345677888889988744
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=81.75 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=79.2
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHc-CC-C----cEEEEEccccch-hhhhhc
Q 021567 121 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLS-GI-T----NGYFIATNATST-FRSIVA 189 (311)
Q Consensus 121 f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~-~~-~----Nv~f~~~Da~~l-l~~~~~ 189 (311)
|.. ....++|+|||.|.-++..-+.. -..++|+|+.+. |.++.+.. +. + .+.|+.+|...- +...++
T Consensus 114 y~~-~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 114 YTK-RGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred Hhc-cccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence 444 46789999999999888876553 347999998654 44433321 11 1 378899887653 233455
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHH
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 250 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~ 250 (311)
+.+.+||+|..+|.-...=....+- +.+|..+++.|+|||+|+-.+.+.+..-+-++
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~a----r~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr 248 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESA----RIALRNVAKCLKPGGVFIGTIPDSDVIIKRLR 248 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHH----HHHHHHHHhhcCCCcEEEEecCcHHHHHHHHH
Confidence 4556699998887533211111111 46789999999999999887655544333333
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.7e-06 Score=78.06 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=90.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCC-cE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPG-KL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~-s~ 195 (311)
+..+||=||-|.|..+..+.+..+..+++.||+.+...+.+++. .-++++++.+|+...+.. ... .+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----TQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----SSST-E
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----ccCCcc
Confidence 46899999999999999999876678999999876655555431 135899999999998754 244 89
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
|.|++..+||.-.... +...+|++.+.++|+|||.+.+...+ ......+.+.+.+.
T Consensus 152 DvIi~D~~dp~~~~~~----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPN----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV 211 (246)
T ss_dssp EEEEEESSSTTSCGGG----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCccc----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence 9999998887533222 66789999999999999999987532 34445556666655
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=83.39 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=72.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH---HHHHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~---~~a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|||||.+++--|+.. ..+|+|||.+ ..|.+.++.+++++ ++++++.++++ .+ |...+|.|..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi---~L--P~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI---EL--PVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE---ec--CccceeEEee
Confidence 36899999999999999999887 5799999964 55667777888877 89999999998 23 3688999865
Q ss_pred eCCCCCCCCchhhhhhhH----HHHHHHHHhcccCCeEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQ----RSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~----~~~l~~i~rvLkpGG~l~ 236 (311)
-+.--+ ++. ...|-.--+.|+|||.++
T Consensus 134 EWMGy~---------Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYF---------LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhHH---------HHHhhhhhhhhhhhhhccCCCceEc
Confidence 422111 111 244445568899999876
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=78.23 Aligned_cols=95 Identities=22% Similarity=0.321 Sum_probs=68.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|+|..||-|.|++.+|+..+...|+++|+.+.|. ++++.+++++ +..+++|+.++. ....+|.|.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------~~~~~drvi 174 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------PEGKFDRVI 174 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------TT-EEEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc------CccccCEEE
Confidence 47899999999999999999977778999999876554 4455567654 899999998873 268899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++.|.- ...||..+.+++++||.+.+
T Consensus 175 m~lp~~------------~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 175 MNLPES------------SLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp E--TSS------------GGGGHHHHHHHEEEEEEEEE
T ss_pred ECChHH------------HHHHHHHHHHHhcCCcEEEC
Confidence 986532 13799999999999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.9e-06 Score=82.69 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=77.0
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+|||++||+|.+++.+|...+...|+++|+++.|.+.+ +.++++++.+.++|+..++.. ...+|.|.+.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-----~~~fD~V~lD- 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-----ERKFDVVDID- 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-----cCCCCEEEEC-
Confidence 589999999999999999886656899999876655544 456788889999999887431 3568999874
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHH
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV 244 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~ 244 (311)
|. -. ...+++...+.+++||.++++ ||-..+
T Consensus 133 --P~-Gs--------~~~~l~~al~~~~~~gilyvSAtD~~~L 164 (382)
T PRK04338 133 --PF-GS--------PAPFLDSAIRSVKRGGLLCVTATDTAPL 164 (382)
T ss_pred --CC-CC--------cHHHHHHHHHHhcCCCEEEEEecCchhh
Confidence 42 11 137888877889999999996 555444
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-06 Score=82.73 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=83.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC--CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI--TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+||++-|=||.+++..|... ...+++||+|..+++.+++ +|+ +.+.|+++|+...+...- .....||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~-~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE-RRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH-hcCCcccEE
Confidence 36889999999999999999873 2389999999887777754 455 348999999999876532 123489999
Q ss_pred EEeCCCCCCCCchhhhhhh--HHHHHHHHHhcccCCeEEEEEeCc
Q 021567 199 SIQCPNPDFNRPEHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~--~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
++. |+-.-+.+..-.+.. ..+++..+.++|+|||.+++.|..
T Consensus 295 ilD-PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 295 ILD-PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEC-CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 886 322222222222222 268889999999999999998754
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.9e-06 Score=85.21 Aligned_cols=156 Identities=23% Similarity=0.368 Sum_probs=99.0
Q ss_pred hhhhhhhhhhhhhhhh---ccCCCc------hhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEE
Q 021567 83 LNMVESGSAVWEFLKG---RMLPGV------SALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFL 153 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~---r~~~~~------~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vv 153 (311)
+.+......+++.+.+ |++|+. ......+....+|... +....+||+.||||.+++++|+. -..|+
T Consensus 335 ~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l---~~~k~llDv~CGTG~iglala~~--~~~Vi 409 (534)
T KOG2187|consen 335 LQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGL---PADKTLLDVCCGTGTIGLALARG--VKRVI 409 (534)
T ss_pred eEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCC---CCCcEEEEEeecCCceehhhhcc--cccee
Confidence 3344444455555555 555553 1222222233455443 34589999999999999999987 46899
Q ss_pred EEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcc
Q 021567 154 GLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 229 (311)
Q Consensus 154 GiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvL 229 (311)
|||+++ .|.++|+.+|++|++|+++.|++++..++...-++=+.+.+. ||--+. .+..+++.+.+.-
T Consensus 410 GvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~ii--DPpR~G-------lh~~~ik~l~~~~ 480 (534)
T KOG2187|consen 410 GVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAII--DPPRKG-------LHMKVIKALRAYK 480 (534)
T ss_pred eeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEE--CCCccc-------ccHHHHHHHHhcc
Confidence 999865 456666778999999999999998776553221233444444 553222 2357888887776
Q ss_pred cCCeEEEEEeCcHHHHHHHHHHH
Q 021567 230 VHDGKVFLQSDIEEVMLRMKQQF 252 (311)
Q Consensus 230 kpGG~l~~~tD~~~~~~~~~~~l 252 (311)
++-=.+|++..-...+..+.+.+
T Consensus 481 ~~~rlvyvSCn~~t~ar~v~~lc 503 (534)
T KOG2187|consen 481 NPRRLVYVSCNPHTAARNVIDLC 503 (534)
T ss_pred CccceEEEEcCHHHhhhhHHHhh
Confidence 68888888765443334444433
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-06 Score=81.65 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=55.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++..|||||||+|.++..++++.+ +++|+|++..+.+.++++- .+|++++++|+.++ + + ++...+.|+.|.|
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~-~--~--~~~~~~~vv~NlP 114 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV-D--L--SELQPLKVVANLP 114 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC-C--H--HHcCcceEEEeCC
Confidence 457899999999999999999864 8999999888877775431 26899999999886 1 1 1211477777743
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.2e-06 Score=82.87 Aligned_cols=128 Identities=15% Similarity=0.141 Sum_probs=88.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||.|.=+..+|.... ...++++|++. ...+++++.|+.|+.+...|+..+ ...+ ++.||.|.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~~~~---~~~fD~IL 188 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-GAAL---PETFDAIL 188 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-hhhc---hhhcCeEE
Confidence 468999999999999999999853 46899999854 455666777999999999999876 2222 56799998
Q ss_pred EeCCCC----CCCCchhhh--------hh--hHHHHHHHHHhcccCCeEEEEEe--CcHHHHHHHHHHH-HhcC
Q 021567 200 IQCPNP----DFNRPEHRW--------RM--VQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQF-LEYG 256 (311)
Q Consensus 200 i~fpdP----~~k~~h~kr--------Rl--~~~~~l~~i~rvLkpGG~l~~~t--D~~~~~~~~~~~l-~~~g 256 (311)
+.-|.. +.+++..++ ++ .+.++|+...+.|||||+++-+| -+..=.+..++.+ ++++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 775532 111111111 11 24799999999999999998765 2233344444433 4443
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.9e-06 Score=81.69 Aligned_cols=117 Identities=20% Similarity=0.229 Sum_probs=87.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.++||+=||.|.|++.||++ ..+|+|+|++. .|.++|+.++++|++|..++++++....- ....+|.|++.
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--~~~~~d~VvvD 369 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--EGYKPDVVVVD 369 (432)
T ss_pred CCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--ccCCCCEEEEC
Confidence 468999999999999999976 57999999854 55666677899999999999999854321 23578988775
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
| |.+ -..+++++.+.+ ++|-..+|++++-..++..+. .+.+.|+.
T Consensus 370 ---P-PR~------G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~-~L~~~gy~ 414 (432)
T COG2265 370 ---P-PRA------GADREVLKQLAK-LKPKRIVYVSCNPATLARDLA-ILASTGYE 414 (432)
T ss_pred ---C-CCC------CCCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHH-HHHhCCeE
Confidence 4 222 233577777765 588899999987766666555 45666654
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.3e-06 Score=76.20 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=47.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccch
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATST 183 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~l 183 (311)
++..|||||||+|.++..++++.+ .++++|+++.+.+.+++. ..+|+.++++|+..+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC
Confidence 467899999999999999999875 599999988777776543 246899999999876
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=79.08 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++..|||||||+|.++..++++ ..+++|+|+++.+.+.+++. ..+|+.++++|+..+ + ...+|.|+.|.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~-----~--~~~~d~Vv~Nl 99 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV-----D--LPEFNKVVSNL 99 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC-----C--chhceEEEEcC
Confidence 4578999999999999999998 35899999987777666542 246899999999876 2 12468888885
Q ss_pred C
Q 021567 203 P 203 (311)
Q Consensus 203 p 203 (311)
|
T Consensus 100 P 100 (258)
T PRK14896 100 P 100 (258)
T ss_pred C
Confidence 5
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.6e-06 Score=76.20 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=90.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------C--CCcEEEEEccccchhhhhhccCCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D~ 197 (311)
.++||-||-|.|..+..+.+..+..+++.||+.+.-++.+++. + -+++.++.+|+...+.. ....+|+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~----~~~~fDv 152 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD----CEEKFDV 152 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh----CCCcCCE
Confidence 3599999999999999999998888999999877666655431 1 25799999999998654 2448999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
|++...||- -+...+.+.+|++.+++.|+++|.+..++.+..+.
T Consensus 153 Ii~D~tdp~----gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 153 IIVDSTDPV----GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred EEEcCCCCC----CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 999988882 12345778999999999999999999997665444
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.5e-06 Score=74.46 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=86.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe-CCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ-CPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~-fpd 204 (311)
...+||||.|.|..+..||..+. ++.+.|+|..++.+.+++|.+ ++ |+.+. . ..+..+|+|... .-|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~kg~~---vl--~~~~w-~----~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKKGFT---VL--DIDDW-Q----QTDFKFDVISCLNVLD 162 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhCCCe---EE--ehhhh-h----ccCCceEEEeehhhhh
Confidence 46799999999999999999875 599999999999999888763 22 33333 1 135689999754 211
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe---------------------------CcHHHHHHHHHHHHhcCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------------------------DIEEVMLRMKQQFLEYGK 257 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t---------------------------D~~~~~~~~~~~l~~~g~ 257 (311)
|+.+- ..+|+.+++.|+|+|+++++. -+++....+.+.++..|+
T Consensus 163 -----Rc~~P----~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF 233 (265)
T PF05219_consen 163 -----RCDRP----LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGF 233 (265)
T ss_pred -----ccCCH----HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCC
Confidence 11110 389999999999999999851 123444555677788888
Q ss_pred Cceeeecccc
Q 021567 258 GKLVLVQDEC 267 (311)
Q Consensus 258 ~~~~~~~d~y 267 (311)
.....++-+|
T Consensus 234 ~v~~~tr~PY 243 (265)
T PF05219_consen 234 EVERWTRLPY 243 (265)
T ss_pred EEEEEeccCc
Confidence 7777766666
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-06 Score=75.54 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=74.1
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEE-EEEccccchhhhhh---c
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGY-FIATNATSTFRSIV---A 189 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~-f~~~Da~~ll~~~~---~ 189 (311)
.+.+.. .+..|||||||||.++..+|+++|+..+.-.|.....+ ..+.+.+++|+. -+..|+..-....- +
T Consensus 19 ~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~ 97 (204)
T PF06080_consen 19 KQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP 97 (204)
T ss_pred HHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence 344443 23369999999999999999999999999999755443 233456677753 34455544311000 1
Q ss_pred cCCCcEeEEEE-eC--CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 190 SYPGKLILVSI-QC--PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 190 ~~~~s~D~V~i-~f--pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
....++|.|+. |+ .-|| -..+.+++.+.++|++||.|++.
T Consensus 98 ~~~~~~D~i~~~N~lHI~p~---------~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 98 LSPESFDAIFCINMLHISPW---------SAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cCCCCcceeeehhHHHhcCH---------HHHHHHHHHHHHhCCCCCEEEEe
Confidence 13568998863 21 2344 12368999999999999999985
|
The function of this family is unknown. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.2e-06 Score=74.89 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=59.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcE-EEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv-~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.++||||||||.++..++++ ...+++|+|++..++....+.. .++ .+...|+..+....++..-..+|++++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~-~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~- 151 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD-ERVKVLERTNIRYVTPADIFPDFATFDVSFISL- 151 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC-CCeeEeecCCcccCCHhHcCCCceeeeEEEeeh-
Confidence 4678999999999999999987 3468999999875554322222 232 24444555332111111124677776652
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
...+..+.+.|+| |.+++
T Consensus 152 ---------------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 152 ---------------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred ---------------HhHHHHHHHHhCc-CeEEE
Confidence 1457888899999 76665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-05 Score=69.51 Aligned_cols=94 Identities=27% Similarity=0.328 Sum_probs=72.7
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHH---HHHH-HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH---CRDS-LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~---a~~~-a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+++|||+|.|-=++.+|-.+|+.+++.+|-+.+ .++. +...+++|++++++.+++. .....||.|+.--.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~------~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP------EYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT------TTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc------ccCCCccEEEeehh
Confidence 799999999999999999999999999996432 2333 3456899999999999981 14789999998744
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|. ..+++.+...|++||.+++.-
T Consensus 125 ~~l------------~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 APL------------DKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SSH------------HHHHHHHGGGEEEEEEEEEEE
T ss_pred cCH------------HHHHHHHHHhcCCCCEEEEEc
Confidence 342 488999999999999988864
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.5e-06 Score=76.02 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=75.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC--CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI--TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||+-|=||.|++..+... ...++.||+|..+++.++ .+++ ++++|+++|+.+.+...- ..+.||.|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~--~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK--KGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH--HTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh--cCCCCCEE
Confidence 46899999999999999887653 357999999887776665 3564 479999999998765421 35689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
++. |+..-|.+..-.| -..+++..+.++|+|||.+++.|..
T Consensus 200 IlD-PPsF~k~~~~~~~-~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 200 ILD-PPSFAKSKFDLER-DYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EE---SSEESSTCEHHH-HHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EEC-CCCCCCCHHHHHH-HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 987 3333222221111 2367889999999999999987755
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.6e-06 Score=78.00 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=85.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEc-cccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIAT-NATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~-Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+..+||==||||.+++...-. +.+++|.|+...+.+-++ ..++++..++.. ||..+ |.++.+||.|.
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-----pl~~~~vdaIa 269 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL-----PLRDNSVDAIA 269 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC-----CCCCCccceEE
Confidence 4679999999999999999876 789999998766655544 346677767766 99988 44567899997
Q ss_pred EeCCCCCCCCchhh--h-h--hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 200 IQCPNPDFNRPEHR--W-R--MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 200 i~fpdP~~k~~h~k--r-R--l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
.. | |..+..+ . + -+..++|+.++++|++||++.|.++. ...+.+.+.++..+
T Consensus 270 tD---P-PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-----~~~~~~~~~~f~v~ 326 (347)
T COG1041 270 TD---P-PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-----DPRHELEELGFKVL 326 (347)
T ss_pred ec---C-CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC-----cchhhHhhcCceEE
Confidence 65 3 2222211 1 1 12379999999999999999999872 22334556666543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=70.36 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=73.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.++||+-||||.+++....+. ...++.||.+..+.+.++ .-+..+ +..+++|+...+.... .....||.|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~-~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA-KKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH-HCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc-ccCCCceEEE
Confidence 46899999999999999988875 358999998876665554 345544 9999999887765431 1468899997
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHH--hcccCCeEEEEEeCcH
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDIE 242 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~--rvLkpGG~l~~~tD~~ 242 (311)
+. +|. .... .....++.+. .+|+++|.+++.++..
T Consensus 120 lD--PPY-~~~~-----~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 120 LD--PPY-AKGL-----YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp E----ST-TSCH-----HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EC--CCc-ccch-----HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 75 333 2211 1246777776 8999999999987543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=66.19 Aligned_cols=72 Identities=10% Similarity=0.091 Sum_probs=56.2
Q ss_pred CCCeEEEEeccccH-HHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGL-FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~-~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.++||||||+|. ++..|++. +..|+|+|+++.+.+.++..+ +.++++|+.+--.++ -..+|+|+..-|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~---~~~v~dDlf~p~~~~----y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG---LNAFVDDLFNPNLEI----YKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC---CeEEECcCCCCCHHH----HhcCCEEEEeCC
Confidence 35689999999995 88888876 679999999999999887664 578899987642111 246799998877
Q ss_pred CC
Q 021567 204 NP 205 (311)
Q Consensus 204 dP 205 (311)
.|
T Consensus 87 p~ 88 (134)
T PRK04148 87 PR 88 (134)
T ss_pred CH
Confidence 66
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.3e-06 Score=76.83 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=54.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cC-CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SG-ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||||||+|.++..+++.. .+++|+|++..+.+.+++ .+ .+|++++++|+... + ...+|.|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-----~--~~~~d~Vv 106 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-----E--FPYFDVCV 106 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-----c--ccccCEEE
Confidence 46789999999999999999873 579999987766665543 33 46899999999775 1 23578888
Q ss_pred EeCCC
Q 021567 200 IQCPN 204 (311)
Q Consensus 200 i~fpd 204 (311)
.|.|-
T Consensus 107 aNlPY 111 (294)
T PTZ00338 107 ANVPY 111 (294)
T ss_pred ecCCc
Confidence 88653
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.9e-05 Score=72.35 Aligned_cols=119 Identities=15% Similarity=0.198 Sum_probs=85.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC--CeEEEEchHH----HHHHHHHHcCCCcE-EEEEccccchhhhhh---ccCC-C
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELVT----HCRDSLQLSGITNG-YFIATNATSTFRSIV---ASYP-G 193 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~--~~vvGiDi~~----~a~~~a~~~~~~Nv-~f~~~Da~~ll~~~~---~~~~-~ 193 (311)
..-+||||.||.|...+.....+|. ..+.-.|.++ ...+.++++|+.++ +|.++||.+. ..+- |.++ .
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~-~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR-DSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH-hHhhccCCCCCEE
Confidence 3468999999999999999998886 7899999754 45556678899887 9999999886 2221 1111 1
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC--cHHHHHHHHHHHHhc
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEY 255 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD--~~~~~~~~~~~l~~~ 255 (311)
.+..++=.|||-. ++ ...++.+++.+.|||+++. |. +.+..+.+...+..|
T Consensus 214 iVsGL~ElF~Dn~---------lv-~~sl~gl~~al~pgG~lIy-TgQPwHPQle~IAr~LtsH 266 (311)
T PF12147_consen 214 IVSGLYELFPDND---------LV-RRSLAGLARALEPGGYLIY-TGQPWHPQLEMIARVLTSH 266 (311)
T ss_pred EEecchhhCCcHH---------HH-HHHHHHHHHHhCCCcEEEE-cCCCCCcchHHHHHHHhcc
Confidence 2333344577642 22 3668899999999999987 54 666666667777665
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=79.95 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=64.7
Q ss_pred CCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHHH----HHHHHcCC-CcEEEEEccccchhhhhhccCCCcEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a~----~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
..+|+|||||+|-+....++. ....+|++||.+..|. ++++.++. ++|+++++|+++.- .+..+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~------lpekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE------LPEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC------HSS-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC------CCCcee
Confidence 468999999999997665443 3457999999754433 23356676 67999999999872 145899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
.|+.-.-.-.- -. ...++.|....|.|||||.++
T Consensus 261 IIVSElLGsfg-----~n-El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFG-----DN-ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTB-----TT-TSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCcc-----cc-ccCHHHHHHHHhhcCCCCEEe
Confidence 99754221110 00 133688999999999999765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.9e-06 Score=72.79 Aligned_cols=105 Identities=10% Similarity=0.128 Sum_probs=64.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP- 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp- 203 (311)
..-+|-|+|||.+.++..+.. ...|.-.|++.. |=.+..+|+..+ |.+++++|.+++...
T Consensus 72 ~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-----------n~~Vtacdia~v-----PL~~~svDv~VfcLSL 132 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-----------NPRVTACDIANV-----PLEDESVDVAVFCLSL 132 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------STTEEES-TTS------S--TT-EEEEEEES--
T ss_pred CCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----------CCCEEEecCccC-----cCCCCceeEEEEEhhh
Confidence 457999999999999865542 357999998541 223667898776 668999999876532
Q ss_pred --CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH---HHHHHHHHHHhcCCCcee
Q 021567 204 --NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---VMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 204 --dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~---~~~~~~~~l~~~g~~~~~ 261 (311)
.-| ..|+.|..|+|||||.+.+.- ... -.+...+.++..|+....
T Consensus 133 MGTn~------------~~fi~EA~RvLK~~G~L~IAE-V~SRf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 133 MGTNW------------PDFIREANRVLKPGGILKIAE-VKSRFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp -SS-H------------HHHHHHHHHHEEEEEEEEEEE-EGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred hCCCc------------HHHHHHHHheeccCcEEEEEE-ecccCcCHHHHHHHHHHCCCeEEe
Confidence 222 599999999999999999862 111 124556667888886543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.3e-05 Score=70.78 Aligned_cols=103 Identities=12% Similarity=0.198 Sum_probs=72.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 124 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 124 ~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+.+.+|-|+|||-+.++. .. ..+|+..|+.. .|=+++.+|+.++ |.+|+++|++++...
T Consensus 179 ~~~~vIaD~GCGEakiA~--~~---~~kV~SfDL~a-----------~~~~V~~cDm~~v-----Pl~d~svDvaV~CLS 237 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS--SE---RHKVHSFDLVA-----------VNERVIACDMRNV-----PLEDESVDVAVFCLS 237 (325)
T ss_pred cCceEEEecccchhhhhh--cc---ccceeeeeeec-----------CCCceeeccccCC-----cCccCcccEEEeeHh
Confidence 357899999999998776 22 23688888743 2446778898886 668999998865421
Q ss_pred ---CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC---cHHHHHHHHHHHHhcCCCce
Q 021567 204 ---NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD---IEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 204 ---dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD---~~~~~~~~~~~l~~~g~~~~ 260 (311)
..| ..|+.++.|+|+|||.+++.-- ..+ ....++.+...|+...
T Consensus 238 LMgtn~------------~df~kEa~RiLk~gG~l~IAEv~SRf~d-v~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 238 LMGTNL------------ADFIKEANRILKPGGLLYIAEVKSRFSD-VKGFVRALTKLGFDVK 287 (325)
T ss_pred hhcccH------------HHHHHHHHHHhccCceEEEEehhhhccc-HHHHHHHHHHcCCeee
Confidence 111 5999999999999999999621 111 2235667778888643
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.9e-05 Score=74.91 Aligned_cols=117 Identities=23% Similarity=0.325 Sum_probs=72.7
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhh-----h------ccC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSI-----V------ASY 191 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~-----~------~~~ 191 (311)
..+||+-||.|.+++.||+.. ..|+|||+++. |.++++.++++|++|++++++++...+ | ...
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 479999999999999999984 58999997654 555666778999999999987753211 0 001
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
...+|.|.+ || |.+. ..+.+++.+.+ +.=.+|+++|-..++..+.. |.+ |+...
T Consensus 276 ~~~~d~vil---DP-PR~G------~~~~~~~~~~~---~~~ivYvSCnP~tlaRDl~~-L~~-~y~~~ 329 (352)
T PF05958_consen 276 SFKFDAVIL---DP-PRAG------LDEKVIELIKK---LKRIVYVSCNPATLARDLKI-LKE-GYKLE 329 (352)
T ss_dssp CTTESEEEE-------TT-------SCHHHHHHHHH---SSEEEEEES-HHHHHHHHHH-HHC-CEEEE
T ss_pred hcCCCEEEE---cC-CCCC------chHHHHHHHhc---CCeEEEEECCHHHHHHHHHH-Hhh-cCEEE
Confidence 235788866 45 2222 22455665543 45789999988888777765 443 66544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.3e-05 Score=65.76 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=78.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.-|||+|.|||-++.++.++ .++..++.||.+..-...+.+. .+.+.++.+|+.++-...=...+..||.|+...|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-YPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-CCCccccccchhhHHHHHhhcCCCeeeeEEeccc
Confidence 3557999999999999999776 7788999999987665555433 3567799999998732221235678999976543
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
---+ + .++|+ ++|+++...|.+||.++.-|
T Consensus 127 ll~~--P-~~~~i---aile~~~~rl~~gg~lvqft 156 (194)
T COG3963 127 LLNF--P-MHRRI---AILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccC--c-HHHHH---HHHHHHHHhcCCCCeEEEEE
Confidence 2111 1 22333 89999999999999998765
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.5e-06 Score=84.44 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI- 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i- 200 (311)
.-.++||||||+|.|+.+|.++ +...+.+-. .+...+.|.++|++-+.-+.+ ...+|+++++||.|+.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~------s~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLG------SQRLPFPSNAFDMVHCS 188 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcCcchhhhhhc------cccccCCccchhhhhcc
Confidence 3468999999999999999988 344444332 233455666677643211111 1234778999999964
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+-.||.... .-+|-++-|+|+|||+|+++
T Consensus 189 rc~i~W~~~~--------g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 189 RCLIPWHPND--------GFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred cccccchhcc--------cceeehhhhhhccCceEEec
Confidence 4677884321 25788999999999999985
|
; GO: 0008168 methyltransferase activity |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.3e-05 Score=68.27 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=78.8
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHH----HHHHHHcCC-CcEEEEEccccchhhhhhcc-CCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHC----RDSLQLSGI-TNGYFIATNATSTFRSIVAS-YPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a----~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V 198 (311)
..++||||.=||..++..|...| +..++++|+...+ .+..+..|. ..+.++++++.+.+++.++. ..++||.+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 57899999999999999999866 6799999986443 444455665 46999999999988877642 35789988
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++ |.| |.+ +..+.+++.++|++||.+++
T Consensus 154 Fv---Dad------K~n--Y~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 154 FV---DAD------KDN--YSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EE---ccc------hHH--HHHHHHHHHhhcccccEEEE
Confidence 65 444 222 23888999999999999987
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=9e-06 Score=68.41 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=66.8
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 121 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 121 f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+++-++..++|+|||.|.+.++.+- +.+..++|+|+.+.|++.+.++ .+ ++.++++|+.++. +..+.||
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle-----~~~g~fD 116 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLE-----LKGGIFD 116 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchh-----ccCCeEe
Confidence 3333578899999999999966553 3356899999988887766543 22 6789999998872 1358999
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhccc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLk 230 (311)
.+.+| .|+ -.|+|..+.+|+.....+.+
T Consensus 117 taviN--ppF----GTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 117 TAVIN--PPF----GTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred eEEec--CCC----CcccccccHHHHHHHHHHHH
Confidence 99988 232 12334455677666555544
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00012 Score=70.65 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=80.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC--CeEEEEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~--~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||.+.+.|.=+..+|+..++ ..|+++|++. ...+++++.|..|+..++.|+..+... .+ ..+.||.|
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~-~~-~~~~fD~i 233 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL-LP-GGEKFDRI 233 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc-cc-ccCcCcEE
Confidence 5789999999999999999998554 5679999864 455566678999999999998766222 11 12359998
Q ss_pred EEeCC---------CCCCCCchhhh-----hhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCP---------NPDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fp---------dP~~k~~h~kr-----Rl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.+.-| +|..+.....+ --++.++|+...+.|||||.++-+|
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 76533 33222221111 1235799999999999999999876
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.00 E-value=4e-05 Score=66.54 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=63.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHHHHcC---CCcEEEEEccccchh-hhhhccCCCcEeE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSLQLSG---ITNGYFIATNATSTF-RSIVASYPGKLIL 197 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a~~~~---~~Nv~f~~~Da~~ll-~~~~~~~~~s~D~ 197 (311)
.+.+|||+|||+|-.++.+|+..+...|+..|..+ .+..+++.++ ..++.+...|..+-. ...+ .+..||.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccCCE
Confidence 46799999999999999999986678999999644 3344444443 356777777764422 2222 3568999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
|... |-..... ..+.+++-+.+.|+|+|.+++..
T Consensus 123 Ilas--Dv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 123 ILAS--DVLYDEE------LFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEE--S--S-GG------GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEe--cccchHH------HHHHHHHHHHHHhCCCCEEEEEe
Confidence 8754 3322111 23699999999999999877754
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-05 Score=73.99 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=84.0
Q ss_pred CeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 127 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+|||+.||+|..++.++.+.+ -..++++|++..|.+.+ +.++..|+.++++|+..++.. ....||.|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----~~~~fDvIdl- 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----RNRKFHVIDI- 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----hCCCCCEEEe-
Confidence 5899999999999999999853 35899999977665544 455677899999999988643 2356898876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHHHH-HHHHHHHhcCC
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVML-RMKQQFLEYGK 257 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~~~-~~~~~l~~~g~ 257 (311)
|| +... ..|++.+.+.+++||.+++. ||...+.. ....-+..+|.
T Consensus 121 --DP-fGs~--------~~fld~al~~~~~~glL~vTaTD~~~L~G~~~~~~~rkYga 167 (374)
T TIGR00308 121 --DP-FGTP--------APFVDSAIQASAERGLLLVTATDTSALCGNYPKSCLRKYGA 167 (374)
T ss_pred --CC-CCCc--------HHHHHHHHHhcccCCEEEEEecccHHhcCCChHHHHHHhCC
Confidence 56 2211 37999999999999999986 77665422 22333445443
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.7e-05 Score=68.41 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=48.7
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHH----HHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.|+|+.||.|..++++|+.+ .+|++||+.+ .|..+++-.|. +|+.|+++|..+++...- ....+|.|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~--~~~~~D~vFlS- 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK--SNKIFDVVFLS- 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB--------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc--ccccccEEEEC-
Confidence 69999999999999999995 4799999864 45555555674 689999999999854321 11227999876
Q ss_pred CCCCC
Q 021567 203 PNPDF 207 (311)
Q Consensus 203 pdP~~ 207 (311)
+||=
T Consensus 77 -PPWG 80 (163)
T PF09445_consen 77 -PPWG 80 (163)
T ss_dssp ---BS
T ss_pred -CCCC
Confidence 6773
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.6e-06 Score=76.16 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=69.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
.+..++|+|||.|..+.. +|...++|.|++...+.-+++.+.+ ..+.+|+..+ |..+.+||.....-.-
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~--~~~~ad~l~~-----p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGD--NVCRADALKL-----PFREESFDAALSIAVI 113 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCc--eeehhhhhcC-----CCCCCccccchhhhhh
Confidence 478999999999998753 4888999999987666655544433 6778999887 5567888876432222
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.|+..+ .-+...++++.|+|+|||...+.
T Consensus 114 hhlsT~-----~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 114 HHLSTR-----ERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhH-----HHHHHHHHHHHHHhcCCCceEEE
Confidence 222221 22258899999999999987663
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.3e-05 Score=63.46 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=43.9
Q ss_pred EEEeccccHHHHHHHhhCCCC---eEEEEchHH---HHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 130 VDIGSGNGLFLLGMARKRKDL---NFLGLELVT---HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 130 LDIGcGtG~~~~~lA~~~p~~---~vvGiDi~~---~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
|||||..|..+..+++..+.. +++++|... ...+.+++.++ .+++++++|..+.++.+. +..+|.+++.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEECC
Confidence 799999999999998865433 699999755 45555554444 479999999988866432 57999999873
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
. |.. +.+ ..-++.+.+.|+|||.+++
T Consensus 78 ~-------H~~-~~~-~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 78 D-------HSY-EAV-LRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ----------H-HHH-HHHHHHHGGGEEEEEEEEE
T ss_pred C-------CCH-HHH-HHHHHHHHHHcCCCeEEEE
Confidence 2 111 111 3668889999999999887
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.1e-05 Score=67.24 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=65.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccch-----hhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~l-----l~~~~~~~~~s~D~V 198 (311)
....+||+||++|.++..+.++. +...++|+|+... ...+++.++++|..+. +...++.....+|+|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-------ccccceeeeecccchhhHHHhhhhhccccccCccee
Confidence 35899999999999999999986 6789999997543 2336788888887653 122222123689999
Q ss_pred EEeCCCCCCCCc---hh-hhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDFNRP---EH-RWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~k~~---h~-krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.....+....+ +. ..++. ...+.-+...|+|||.+++.+
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~-~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLI-LSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp EE-------SSHHSSHHHHHHHH-HHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccCCCCchhhHHHHHHHHH-HHHHHHHHhhhcCCCEEEEEe
Confidence 876522211110 11 11222 233446668899999988865
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.89 E-value=8e-05 Score=70.50 Aligned_cols=96 Identities=19% Similarity=0.335 Sum_probs=67.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH---HHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~---~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|||+|.+..-.|+.. ..++.+||.+ +.|.+.++.+.+ +++.++.|.++++ + + ++.+|.++.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-e--L---PEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDI-E--L---PEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccc-c--C---chhccEEEe
Confidence 36899999999999998888764 4689999965 456666665554 5699999999987 1 2 577888754
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHH---HHhcccCCeEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEA---VSDLLVHDGKVF 236 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~---i~rvLkpGG~l~ 236 (311)
- |.- --+++++.|+. .++.|||.|..+
T Consensus 250 E---PMG------~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 250 E---PMG------YMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred c---cch------hhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 3 210 01233444442 358999998765
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.7e-05 Score=67.23 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=70.1
Q ss_pred CCCeEEEEeccccHHHHHHHhh--CCCCeEEEEch----HHHHHHHHHHc----------CCCcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEL----VTHCRDSLQLS----------GITNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi----~~~a~~~a~~~----------~~~Nv~f~~~Da~~ll~~~~ 188 (311)
++-..||||+|||.++..+|.. .+..+.+|||. ++.+.+++... ...++.++.+|......
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~--- 158 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA--- 158 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC---
Confidence 4678999999999999999965 44556699994 34444444321 12468999999988732
Q ss_pred ccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 189 ~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
....+|.|++.-..+ +..+++...|+|||.+++-.
T Consensus 159 --e~a~YDaIhvGAaa~--------------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 159 --EQAPYDAIHVGAAAS--------------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred --ccCCcceEEEccCcc--------------ccHHHHHHhhccCCeEEEee
Confidence 467899999884433 55677788899999998853
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00026 Score=55.58 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=64.3
Q ss_pred EEEEeccccHHHHHHHhhCCC-CeEEEEchHHHHHHHHHHcC--CC-c-EEEEEccccchhhhhhccCC-CcEeEEEEeC
Q 021567 129 VVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSG--IT-N-GYFIATNATSTFRSIVASYP-GKLILVSIQC 202 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~a~~~a~~~~--~~-N-v~f~~~Da~~ll~~~~~~~~-~s~D~V~i~f 202 (311)
++|+|||+|... .++...+. ..++|+|.+..++....... .. + +.+..+|.... .++..+ ..+|.+ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG---VLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC---CCCCCCCCceeEE-eee
Confidence 999999999977 44444333 48999998765555432221 11 1 67888887762 113344 489988 443
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
...+... ....+.++.+.|+|+|.+.+....
T Consensus 127 ~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 127 LVLHLLP--------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eehhcCC--------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 3221111 247899999999999999987543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00037 Score=61.27 Aligned_cols=107 Identities=13% Similarity=0.184 Sum_probs=73.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.++||+-+|+|.+++..+.+. ...++.||.+.++.+.+++ .+. .++.++..|+...++..- ..+.||.|+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~--~~~~FDlVf 119 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG--TREPFDLVF 119 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC--CCCcccEEE
Confidence 47899999999999999999886 3589999987766655543 342 479999999997654311 223599997
Q ss_pred EeCCCCCCCCchhhhhhhH-HHHHH--HHHhcccCCeEEEEEeCcH
Q 021567 200 IQCPNPDFNRPEHRWRMVQ-RSLVE--AVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~-~~~l~--~i~rvLkpGG~l~~~tD~~ 242 (311)
+. |-+.+. +.. ..-+. +-..+|+|+|.+++.++..
T Consensus 120 lD---PPy~~~-----l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 120 LD---PPYAKG-----LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred eC---CCCccc-----hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 64 433221 221 11122 2357899999999988654
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.7e-05 Score=69.25 Aligned_cols=71 Identities=17% Similarity=0.111 Sum_probs=56.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCC-cEeEEEEeC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPG-KLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~-s~D~V~i~f 202 (311)
+..|||||+|.|.++..|+++. ..++++|+.......+++. ..+|+.++++|+...- + ++- ..+.|+.|-
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d---~--~~l~~~~~vVaNl 103 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD---F--PSLAQPYKVVANL 103 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc---c--hhhcCCCEEEEcC
Confidence 5789999999999999999994 5799999987777766554 3579999999998871 2 221 567888885
Q ss_pred C
Q 021567 203 P 203 (311)
Q Consensus 203 p 203 (311)
|
T Consensus 104 P 104 (259)
T COG0030 104 P 104 (259)
T ss_pred C
Confidence 5
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00026 Score=63.74 Aligned_cols=115 Identities=21% Similarity=0.166 Sum_probs=79.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHH-HHcCCCcEEEEEccccchhhhhhccCCCc-EeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSL-QLSGITNGYFIATNATSTFRSIVASYPGK-LILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a-~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s-~D~V~i 200 (311)
..+++|||+|.|-=++.||-.+|+.+++-+|-.. .-++.+ ++.+++|++++++.++++-. +.. +|.|+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~------~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ------EKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc------ccccCcEEEe
Confidence 4789999999999999999889999999999532 223333 45789999999999999821 122 899986
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE--eCcHHHHHHHHHHHHhcCCC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ--SDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~--tD~~~~~~~~~~~l~~~g~~ 258 (311)
--..+- ..+++-+...||+||.+.+. .-..++..+..+.....++.
T Consensus 142 RAva~L------------~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~ 189 (215)
T COG0357 142 RAVASL------------NVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQ 189 (215)
T ss_pred ehccch------------HHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCc
Confidence 522221 47788889999999886432 11233344444444444443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00027 Score=74.12 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=74.7
Q ss_pred CCeEEEEeccccHHHHHHHhhC------------------------------------------CCCeEEEEchHHHH--
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR------------------------------------------KDLNFLGLELVTHC-- 161 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~------------------------------------------p~~~vvGiDi~~~a-- 161 (311)
+..++|-+||+|++++..|... ....++|+|+++.+
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 5789999999999999887631 12369999986554
Q ss_pred --HHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhh--hhhHHHHHHHHHhcccCCeEEE
Q 021567 162 --RDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW--RMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 162 --~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~kr--Rl~~~~~l~~i~rvLkpGG~l~ 236 (311)
.+++...|+. .+.|.++|+.++.. +...+++|.|+.| .|+-+...... +.+.+.+.+ ..+.+.+|+.++
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~---~~~~~~~d~IvtN--PPYg~r~~~~~~l~~lY~~lg~-~lk~~~~g~~~~ 344 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKN---PLPKGPTGLVISN--PPYGERLGEEPALIALYSQLGR-RLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhccc---ccccCCCCEEEEC--CCCcCccCchHHHHHHHHHHHH-HHHHhCCCCeEE
Confidence 4555556775 48999999988621 2123579999888 45433211111 112233333 333344999999
Q ss_pred EEeCcHHHHHHH
Q 021567 237 LQSDIEEVMLRM 248 (311)
Q Consensus 237 ~~tD~~~~~~~~ 248 (311)
+.|.+..+...+
T Consensus 345 llt~~~~l~~~~ 356 (702)
T PRK11783 345 LFSSSPELLSCL 356 (702)
T ss_pred EEeCCHHHHHHh
Confidence 888777655443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00015 Score=73.57 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=50.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCC--------CCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK--------DLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p--------~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
..+|||.|||+|.++..++++.+ ..+++|+|+.+.++..++. .+.-.+.....|.........+...+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 45899999999999999987654 2578999998777665542 22112344444433210000111235
Q ss_pred cEeEEEEeCCCCCCC
Q 021567 194 KLILVSIQCPNPDFN 208 (311)
Q Consensus 194 s~D~V~i~fpdP~~k 208 (311)
.||.|+.| +||-+
T Consensus 112 ~fD~IIgN--PPy~~ 124 (524)
T TIGR02987 112 LFDIVITN--PPYGR 124 (524)
T ss_pred cccEEEeC--CCccc
Confidence 79999998 66654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=68.74 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=58.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++..+||.+||.|.++..+++..| +..|+|+|.+..|++.+++. ..++++++++|..++.. .++..-.++|.|++.
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~-~l~~~~~~vDgIl~D 97 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE-VLAEGLGKVDGILLD 97 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH-HHHcCCCccCEEEEC
Confidence 356999999999999999999975 78999999988888777532 13589999999998743 332111278988654
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.5e-05 Score=69.95 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=75.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-------CCCCeEEEEchHHHHHHHHH----HcCC--CcEEEEEccccchhhhhhccC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLELVTHCRDSLQ----LSGI--TNGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-------~p~~~vvGiDi~~~a~~~a~----~~~~--~Nv~f~~~Da~~ll~~~~~~~ 191 (311)
.+.+|+|-+||+|.++.+..+. .+..+++|+|+...+...++ -++. .+..+.++|...... . ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~--~-~~ 122 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDK--F-IK 122 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHS--C-TS
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccc--c-cc
Confidence 3568999999999999998874 46789999998765544332 2332 345688888765411 1 02
Q ss_pred CCcEeEEEEeCCCCCCCC--chhh-------------hhhhHHHHHHHHHhcccCCeEEEEEeCcHHH-----HHHHHHH
Q 021567 192 PGKLILVSIQCPNPDFNR--PEHR-------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----MLRMKQQ 251 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~--~h~k-------------rRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~-----~~~~~~~ 251 (311)
...+|.|..+ .|+-.. .+.. +.-..-.|+..+.+.|++||++.+......+ ...+++.
T Consensus 123 ~~~~D~ii~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ 200 (311)
T PF02384_consen 123 NQKFDVIIGN--PPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKY 200 (311)
T ss_dssp T--EEEEEEE----CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHH
T ss_pred ccccccccCC--CCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHH
Confidence 4789999998 343322 0000 0111236999999999999998776533222 2345555
Q ss_pred HHhc
Q 021567 252 FLEY 255 (311)
Q Consensus 252 l~~~ 255 (311)
+.+.
T Consensus 201 ll~~ 204 (311)
T PF02384_consen 201 LLEN 204 (311)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5544
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00031 Score=65.82 Aligned_cols=112 Identities=18% Similarity=0.299 Sum_probs=81.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||.++|.|.=+..+|+... ...+++.|++.. ...++++.|..|+..+..|+........ ...||.|.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~---~~~fd~Vl 161 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP---ESKFDRVL 161 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH---TTTEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc---ccccchhh
Confidence 467899999999999999999855 679999998543 4445566789999999999888743222 44699998
Q ss_pred EeCCCCCC----CCchhhhh--------h--hHHHHHHHHHhcc----cCCeEEEEEe
Q 021567 200 IQCPNPDF----NRPEHRWR--------M--VQRSLVEAVSDLL----VHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~----k~~h~krR--------l--~~~~~l~~i~rvL----kpGG~l~~~t 239 (311)
+.-|-... +.+..+++ + ++.++|+...+.+ ||||+++-+|
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 87542211 11111111 1 2479999999999 9999999887
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=64.05 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=66.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-C---CCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-G---ITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+.||.|+|.|.++..+.... -..|--||.++.-++.|++. + ..-..+.+..++++. | .++.+|+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~----P-~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT----P-EEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc----C-CCCcEeEEEe
Confidence 35789999999999999886543 24788888877777777632 1 123677777777662 2 3579999999
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+..--+..+. -+ -+||+++...|+|||.++++
T Consensus 129 QW~lghLTD~----dl--v~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 129 QWCLGHLTDE----DL--VAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ES-GGGS-HH----HH--HHHHHHHHHHEEEEEEEEEE
T ss_pred hHhhccCCHH----HH--HHHHHHHHHhCcCCcEEEEE
Confidence 9553321111 11 38899999999999999996
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.8e-05 Score=67.68 Aligned_cols=100 Identities=11% Similarity=-0.009 Sum_probs=76.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCC--cEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
..+.++|||||-|.+...+..+. -.+++-+|+|..+++.++...-+ .+....+|-+.+ ++.++++|+|....
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~L-----df~ens~DLiisSl 145 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFL-----DFKENSVDLIISSL 145 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcc-----cccccchhhhhhhh
Confidence 35789999999999999998775 45789999998888877654322 255667786665 55799999998776
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.-.|.... +.-+.+++..|||+|.|+-+
T Consensus 146 slHW~NdL--------Pg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 146 SLHWTNDL--------PGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhccC--------chHHHHHHHhcCCCccchhH
Confidence 66663221 57788899999999998753
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00032 Score=67.22 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=77.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||.=+|-|.|++.+|+..... |+++|+...|. ++++.++..+ +..+++|+..... ..+.+|.|+
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-----~~~~aDrIi 261 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-----ELGVADRII 261 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh-----ccccCCEEE
Confidence 48899999999999999999985433 99999876554 4555567776 8999999998832 127899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.|.-- ..|+....+.+++||.+++.+
T Consensus 262 m~~p~~a------------~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 262 MGLPKSA------------HEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred eCCCCcc------------hhhHHHHHHHhhcCcEEEEEe
Confidence 9976421 378999999999999999864
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0002 Score=59.33 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=43.9
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccc
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATS 182 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ 182 (311)
++||||||.|.++..+++..|..+++++|..+.+. ++++.++.+|+.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999999988999999765444 44444567788888877654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=68.83 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=66.0
Q ss_pred CeEEEEeccccHHHHHHH----hhCC----CCeEEEEchHHHHHHHHHHcC-----------------------------
Q 021567 127 PLVVDIGSGNGLFLLGMA----RKRK----DLNFLGLELVTHCRDSLQLSG----------------------------- 169 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA----~~~p----~~~vvGiDi~~~a~~~a~~~~----------------------------- 169 (311)
-+|+..||+||+=.-.+| +..+ +..++|.|++..++++|++.-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999998544433 2221 468999999988888876320
Q ss_pred -----C-CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 170 -----I-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 170 -----~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+ ..|.|.+.|+.+. .++ ..+.||+|+....-..+.. -.+.++++.+++.|+|||.|++-
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~---~~~-~~~~fD~I~cRNvliyF~~------~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAK---QWA-VPGPFDAIFCRNVMIYFDK------TTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEChHHHccCEEEcccCCCC---CCc-cCCCcceeeHhhHHhcCCH------HHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 2356666666542 111 2578999875211111111 12358899999999999998874
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.58 E-value=9.4e-05 Score=65.72 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCeEEEEeccccHHHHHHH----h---h-CC-CCeEEEEchHHHHHHHHHHc-----------------------C----
Q 021567 126 QPLVVDIGSGNGLFLLGMA----R---K-RK-DLNFLGLELVTHCRDSLQLS-----------------------G---- 169 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA----~---~-~p-~~~vvGiDi~~~a~~~a~~~-----------------------~---- 169 (311)
.-+|+-.||+||+=.-.|| + . .+ +..++|.|++..++++|++. +
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4589999999998544443 3 1 12 46999999998888876521 1
Q ss_pred -----CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 170 -----ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 170 -----~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-++|.|.+.|+.+. +...+.+|+|+.--.--.+.. -.+.+.++.+++.|+|||.|++-
T Consensus 112 v~~~lr~~V~F~~~NL~~~-----~~~~~~fD~I~CRNVlIYF~~------~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDP-----DPPFGRFDLIFCRNVLIYFDP------ETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS-H------HHHHHHHHHHGGGEEEEEEEEE-
T ss_pred EChHHcCceEEEecccCCC-----CcccCCccEEEecCEEEEeCH------HHHHHHHHHHHHHcCCCCEEEEe
Confidence 02578888887762 124678999975421111111 13368999999999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00067 Score=64.66 Aligned_cols=108 Identities=9% Similarity=0.070 Sum_probs=68.3
Q ss_pred CCCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHHHHHHHH----cCCCcEEE--EEccccchhhhhhccC--C
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQL----SGITNGYF--IATNATSTFRSIVASY--P 192 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f--~~~Da~~ll~~~~~~~--~ 192 (311)
++..++|+|||+|.=+..|.+. .....|++||+|..+++.+.+ ...+++.+ +++|-.+.+. +++.+ .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~-~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA-WLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh-hccccccc
Confidence 3568999999999987665543 235789999998777666543 34456666 7888777543 22211 1
Q ss_pred CcEeEEEEe---CCCCCCCCchhhhhhhHHHHHHHHHh-cccCCeEEEEEeCc
Q 021567 193 GKLILVSIQ---CPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQSDI 241 (311)
Q Consensus 193 ~s~D~V~i~---fpdP~~k~~h~krRl~~~~~l~~i~r-vLkpGG~l~~~tD~ 241 (311)
.....+++. +.|- .+ .-...||+++++ .|+|||.|.+..|-
T Consensus 155 ~~~r~~~flGSsiGNf-----~~---~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 155 SRPTTILWLGSSIGNF-----SR---PEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred CCccEEEEeCccccCC-----CH---HHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 222333221 1111 00 112489999999 99999999997653
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0023 Score=57.10 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=68.9
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh--hhhhc-cCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--RSIVA-SYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll--~~~~~-~~~~s~D~V~i 200 (311)
++..|+|||+..|.++..++++ .+...++|+|+.+. ..+.+|.++++|+.+-- ..+.. .....+|+|..
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s 117 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS 117 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------ccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEe
Confidence 4789999999999999999988 44556999998552 22467999999987631 11111 12344788865
Q ss_pred eCCCCCCCCc-----hhhhhhhH--HHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRP-----EHRWRMVQ--RSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~-----h~krRl~~--~~~l~~i~rvLkpGG~l~~~t 239 (311)
. +-|+.. +|- |.+. ...++-...+|+|||.+.+..
T Consensus 118 D---~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 118 D---MAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred c---CCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 4 222211 111 2222 455667788999999999763
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00047 Score=61.74 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=74.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++.+||+||+|-|.....+.++.|..+ +-||--....++.+..| -.||..+.+-.++.++.+ +|+.||.|+..
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L---~d~~FDGI~yD 176 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTL---PDKHFDGIYYD 176 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecchHhhhccc---cccCcceeEee
Confidence 578999999999999999988887665 44776566666666544 368999999988886542 58889999765
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-=.|. .. -...|.+.+.|+|||+|++.+.
T Consensus 177 Ty~e~-----yE---dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 177 TYSEL-----YE---DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred chhhH-----HH---HHHHHHHHHhhhcCCCceEEEe
Confidence 11111 10 1136777889999999999874
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0025 Score=57.03 Aligned_cols=114 Identities=15% Similarity=0.268 Sum_probs=78.5
Q ss_pred EEEEeccccHHHHHHHhhCCCCeEEEEchHH----HHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCc-EeEEEEeC
Q 021567 129 VVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGK-LILVSIQC 202 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s-~D~V~i~f 202 (311)
|.||||-.|.+.+.|.++..-..++++|+++ .|.+.++..++ +.+.+..+|....++ ++. +|.|++--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~------~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK------PGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC------CCCCCCEEEEec
Confidence 6899999999999999998777999999864 55555666675 459999999877632 333 78887651
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
. .- .+-.++|++....++..-.|+++.... ...+++.+.++||...
T Consensus 75 M--------GG--~lI~~ILe~~~~~~~~~~~lILqP~~~--~~~LR~~L~~~gf~I~ 120 (205)
T PF04816_consen 75 M--------GG--ELIIEILEAGPEKLSSAKRLILQPNTH--AYELRRWLYENGFEII 120 (205)
T ss_dssp E---------H--HHHHHHHHHTGGGGTT--EEEEEESS---HHHHHHHHHHTTEEEE
T ss_pred C--------CH--HHHHHHHHhhHHHhccCCeEEEeCCCC--hHHHHHHHHHCCCEEE
Confidence 1 00 122578888888888878999987654 4478888999998654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0018 Score=60.05 Aligned_cols=108 Identities=9% Similarity=-0.069 Sum_probs=75.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH--------cCCCcEEEEEccccchhhhhhccCCCcE
Q 021567 124 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--------SGITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 124 ~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~--------~~~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
++..+||=||-|-|..+..+.+. |. +++-||+.+...+.+++ ..-++++++. .+ . ....+++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~----~~-~---~~~~~~f 140 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK----QL-L---DLDIKKY 140 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee----hh-h---hccCCcC
Confidence 35689999999999999999986 44 89999986655544443 1224577764 12 1 1124789
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH----HHHHHHHHHh
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV----MLRMKQQFLE 254 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~----~~~~~~~l~~ 254 (311)
|+|++...++ ++|.+.+++.|+|||.+..++.+..+ +..+.+.+.+
T Consensus 141 DVIIvDs~~~-------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~ 190 (262)
T PRK00536 141 DLIICLQEPD-------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD 190 (262)
T ss_pred CEEEEcCCCC-------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh
Confidence 9998873322 48999999999999999998765433 3444555554
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00036 Score=62.39 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=53.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH-------HHHHHH----HcC--CCcEEEEEccccchh--hhhhc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH-------CRDSLQ----LSG--ITNGYFIATNATSTF--RSIVA 189 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~-------a~~~a~----~~~--~~Nv~f~~~Da~~ll--~~~~~ 189 (311)
+...++|||||.|...++.|-..+-...+|||+.+. +.+..+ ..| ...+.+.++|..+.. ...+
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~- 120 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW- 120 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG-
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh-
Confidence 468999999999999999998876667999997432 122211 223 356888999876531 1111
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
..-|+|++|-- -|.. -+ ..-|.+....||+|-+++-
T Consensus 121 ---s~AdvVf~Nn~--~F~~------~l-~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 ---SDADVVFVNNT--CFDP------DL-NLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---HC-SEEEE--T--TT-H------HH-HHHHHHHHTTS-TT-EEEE
T ss_pred ---cCCCEEEEecc--ccCH------HH-HHHHHHHHhcCCCCCEEEE
Confidence 24578887611 1100 01 1334666678899988753
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00086 Score=62.36 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=64.3
Q ss_pred CCeEEEEeccccHH----HHHHHhhCC-----CCeEEEEchHHHHHHHHHHcCC--------------------------
Q 021567 126 QPLVVDIGSGNGLF----LLGMARKRK-----DLNFLGLELVTHCRDSLQLSGI-------------------------- 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~~----~~~lA~~~p-----~~~vvGiDi~~~a~~~a~~~~~-------------------------- 170 (311)
.-+|.-+||+||+= ++.+++..| ..+++|.|++..++++|+..-.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 45899999999974 333344454 5799999998888777652100
Q ss_pred -------CcEEEEEccccchhhhhhccCCCcEeEEEE----eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 171 -------TNGYFIATNATSTFRSIVASYPGKLILVSI----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 171 -------~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i----~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++|.|-+.|+.+- . ...+.||+|++ .|-|. -.+.++++.++..|+|||.|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~---~--~~~~~fD~IfCRNVLIYFd~----------~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDD---S--PFLGKFDLIFCRNVLIYFDE----------ETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCC---c--cccCCCCEEEEcceEEeeCH----------HHHHHHHHHHHHHhCCCCEEEEc
Confidence 1344555544332 1 13567888752 22222 14468999999999999999984
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0029 Score=61.36 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=76.7
Q ss_pred CeEEEEeccccHHHHHHHhhCCC--------------------------------C-------eEEEEchH----HHHHH
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKD--------------------------------L-------NFLGLELV----THCRD 163 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~--------------------------------~-------~vvGiDi~----~~a~~ 163 (311)
..++|==||+|++++..|...++ . .++|+|+. +.|..
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 56999999999999999887642 1 37899975 45666
Q ss_pred HHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhh--hhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 164 SLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 164 ~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~k--rRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
++++.|+ +-|.|.++|+..+ .. +-.++|.|+.| .|+=..-..+ -.-+++.|.+.+++.++--+.++|.|+
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l-~~----~~~~~gvvI~N--PPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDL-KE----PLEEYGVVISN--PPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHhcCCCceEEEEEcchhhC-CC----CCCcCCEEEeC--CCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 6666776 4599999999987 21 12688999888 4442221111 112347888888899988889988774
Q ss_pred c
Q 021567 241 I 241 (311)
Q Consensus 241 ~ 241 (311)
-
T Consensus 346 e 346 (381)
T COG0116 346 E 346 (381)
T ss_pred H
Confidence 3
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.015 Score=52.57 Aligned_cols=124 Identities=17% Similarity=0.140 Sum_probs=84.8
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH--HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ--LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~--~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++..||-+|.++|+....++.- .|+..|.+||.+.+..+.+- ...-+|+--+.+||..-.. ...--+.+|.|+..
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~--Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEK--YRMLVEMVDVIFQD 150 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGG--GTTTS--EEEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHH--hhcccccccEEEec
Confidence 4789999999999999999987 56889999998765444331 1223699999999987521 11123589999887
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe---------CcHHHHHHHHHHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t---------D~~~~~~~~~~~l~~~g~~~~ 260 (311)
..-|. ..+-++.....-||+||.+++.. +....+..-.+.+++.++...
T Consensus 151 VaQp~----------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 151 VAQPD----------QARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp -SSTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred CCChH----------HHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 65552 11356667778899999988752 345566677777888777654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.005 Score=59.22 Aligned_cols=126 Identities=15% Similarity=0.171 Sum_probs=92.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHH---------HcCC--CcEEEEEccccchhhhhhccCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQ---------LSGI--TNGYFIATNATSTFRSIVASYP 192 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~---------~~~~--~Nv~f~~~Da~~ll~~~~~~~~ 192 (311)
....+|=+|-|.|--+.++.+ +| -.+++-+|+..++++-++ ++.. ++++.+..||.+.++. ..
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~----a~ 363 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT----AA 363 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh----hc
Confidence 467899999999998888876 57 558999997655544332 1222 4699999999998654 35
Q ss_pred CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH----HHHHHHHHHhcCCC
Q 021567 193 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV----MLRMKQQFLEYGKG 258 (311)
Q Consensus 193 ~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~----~~~~~~~l~~~g~~ 258 (311)
..+|.|++.+|||.-. .--|+-+.+|...++|.|+++|.++++..+.-+ +=.+...+++.|+.
T Consensus 364 ~~fD~vIVDl~DP~tp---s~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~ 430 (508)
T COG4262 364 DMFDVVIVDLPDPSTP---SIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYR 430 (508)
T ss_pred ccccEEEEeCCCCCCc---chhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcce
Confidence 6899999999999521 233666789999999999999999998654322 22345677788764
|
|
| >PLN03034 phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.001 Score=66.10 Aligned_cols=102 Identities=32% Similarity=0.537 Sum_probs=74.1
Q ss_pred eeeccCCc-----hhhHhhhhceeEEEcccc-ccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHHh--hccch
Q 021567 9 LSILGQGP-----WKRLLLQLQNVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK--VSSSI 80 (311)
Q Consensus 9 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~s~ 80 (311)
..++--|| +++.+.+||.|+|-||.- |.+ +++..|...|++.++.++..+|--++.|.-.++++.. +.+..
T Consensus 370 ~~~lDIGp~Ti~~~~~~i~~akTI~WNGPmGvFE~-~~Fa~GT~~l~~aia~~~~~~a~sIvGGGDt~aAi~~~g~~~~~ 448 (481)
T PLN03034 370 WMGLDIGPDSVKTFNEALDTTQTVIWNGPMGVFEF-EKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVM 448 (481)
T ss_pred CEEEecCHHHHHHHHHHHhhCCEEEEECCcccccC-CcchHHHHHHHHHHHHhhcCCCeEEEcCcHHHHHHHHcCCccce
Confidence 44555666 678999999999999997 887 8899999999999999886655444444444444443 32221
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCchhhhhhCCC
Q 021567 81 FGLNMVESGSAVWEFLKGRMLPGVSALDRAFPF 113 (311)
Q Consensus 81 ~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~ 113 (311)
. | ...+....++++-|+..|+..++++.+|.
T Consensus 449 s-h-iSTGGGA~Le~LeGk~LPgv~aL~~~~~~ 479 (481)
T PLN03034 449 S-H-ISTGGGASLELLEGKELPGVVALDEATPV 479 (481)
T ss_pred e-E-EeCcHHHHHHHHcCCCCcHHHHHhhcCCc
Confidence 1 1 23446889999999999999888776653
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=59.61 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=53.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CC---CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GI---TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~---~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+...|||||.|||..+..|.+. ..+|+++|+..++...+++. |. ..+.+++||.... +...||.++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-------d~P~fd~cV 128 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-------DLPRFDGCV 128 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-------CCcccceee
Confidence 4689999999999999999988 67999999877666555442 33 3599999998876 134567766
Q ss_pred EeCC
Q 021567 200 IQCP 203 (311)
Q Consensus 200 i~fp 203 (311)
.|.|
T Consensus 129 sNlP 132 (315)
T KOG0820|consen 129 SNLP 132 (315)
T ss_pred ccCC
Confidence 6543
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0043 Score=64.69 Aligned_cols=121 Identities=15% Similarity=0.111 Sum_probs=78.6
Q ss_pred CCeEEEEeccccHHHHHHHhhC-------C-----CCeEEEEch---HHHHHHHH--------------HH------cCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR-------K-----DLNFLGLEL---VTHCRDSL--------------QL------SGI 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~-------p-----~~~vvGiDi---~~~a~~~a--------------~~------~~~ 170 (311)
.-+|+|+|.|+|...+...+.+ | ..+++++|. +..-+.++ .+ .|.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999877665433 3 358999993 21111111 10 122
Q ss_pred -------C--cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 171 -------T--NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 171 -------~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
. ++.++.+|+.+.+..+ +..+|.+++.-=.| .+.+ .+=++++++.++++++|||.+.-.|
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~----~~~~d~~~lD~FsP---~~np--~~W~~~~~~~l~~~~~~~~~~~t~t-- 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL----DARADAWFLDGFAP---AKNP--DMWSPNLFNALARLARPGATLATFT-- 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc----cccccEEEeCCCCC---ccCh--hhccHHHHHHHHHHhCCCCEEEEee--
Confidence 1 4667889998876532 35689998751112 0100 1334799999999999999998555
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 021567 242 EEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 242 ~~~~~~~~~~l~~~g~~~ 259 (311)
-...+...|.+.|+..
T Consensus 207 --~a~~vr~~l~~~GF~v 222 (662)
T PRK01747 207 --SAGFVRRGLQEAGFTV 222 (662)
T ss_pred --hHHHHHHHHHHcCCee
Confidence 4557788888998864
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.003 Score=57.39 Aligned_cols=149 Identities=17% Similarity=0.090 Sum_probs=90.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe--C
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ--C 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~--f 202 (311)
.+.++||||..||.|+..+.++. ..+|+|+|.....+..--++...-+.+...|+..+.+..+ .+..|.+++. |
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~---~~~~d~~v~DvSF 154 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF---TEKPDLIVIDVSF 154 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc---ccCCCeEEEEeeh
Confidence 57899999999999999999874 4689999975433322222333335666788887754433 2355555543 3
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCCCCC
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSF 282 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~~~ 282 (311)
.. -...|..+..+|+|+|.+..- ..+.||...+.+...|. + +|. ....
T Consensus 155 IS-------------L~~iLp~l~~l~~~~~~~v~L--vKPQFEagr~~v~kkGv----v-~d~------------~~~~ 202 (245)
T COG1189 155 IS-------------LKLILPALLLLLKDGGDLVLL--VKPQFEAGREQVGKKGV----V-RDP------------KLHA 202 (245)
T ss_pred hh-------------HHHHHHHHHHhcCCCceEEEE--ecchhhhhhhhcCcCce----e-cCc------------chHH
Confidence 21 147788889999999887763 34566666665543322 1 110 1112
Q ss_pred CCCCHHHHHHHHcCCCeEEEEEEeCCC
Q 021567 283 GVRSDWEQHVIDRGAPMYRLMLSKPSC 309 (311)
Q Consensus 283 ~~~T~yE~~~~~~G~~i~~~~~~k~~~ 309 (311)
.+..+.++...+.|..+.-+....+.+
T Consensus 203 ~v~~~i~~~~~~~g~~~~gl~~Spi~G 229 (245)
T COG1189 203 EVLSKIENFAKELGFQVKGLIKSPIKG 229 (245)
T ss_pred HHHHHHHHHHhhcCcEEeeeEccCccC
Confidence 334555555556666666665555544
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.01 Score=52.23 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=72.6
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc-cccchh--hhhhc-cCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTF--RSIVA-SYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~-Da~~ll--~~~~~-~~~~s~D~V~ 199 (311)
++.+|||+||..|.++.-.-++ +|+..++|||+... ..+..+.++++ |+.+-. ..++. .++..+|.|.
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVl 141 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVL 141 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-------cCCCCcccccccccCCHHHHHHHHHhCCCCcccEEE
Confidence 4789999999999999888777 69999999997421 11234455555 555431 11221 2467889887
Q ss_pred EeC-CCCCC-CCchhhhhhhH--HHHHHHHHhcccCCeEEEEEe----CcHHHHHHHHHHHHh
Q 021567 200 IQC-PNPDF-NRPEHRWRMVQ--RSLVEAVSDLLVHDGKVFLQS----DIEEVMLRMKQQFLE 254 (311)
Q Consensus 200 i~f-pdP~~-k~~h~krRl~~--~~~l~~i~rvLkpGG~l~~~t----D~~~~~~~~~~~l~~ 254 (311)
..+ |++-- ..+.| -|++. .+.+--....++|+|.|++++ +...+...|.+.++.
T Consensus 142 SDMapnaTGvr~~Dh-~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~ 203 (232)
T KOG4589|consen 142 SDMAPNATGVRIRDH-YRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTN 203 (232)
T ss_pred eccCCCCcCcchhhH-HHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhh
Confidence 654 33310 01111 12332 234444456788999999875 233444455555443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0013 Score=54.95 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=42.9
Q ss_pred CCCeEEEEeccccHHHHHHHh-----hCCCCeEEEEchH----HHHHHHHHHcC--C-CcEEEEEccccch
Q 021567 125 AQPLVVDIGSGNGLFLLGMAR-----KRKDLNFLGLELV----THCRDSLQLSG--I-TNGYFIATNATST 183 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~-----~~p~~~vvGiDi~----~~a~~~a~~~~--~-~Nv~f~~~Da~~l 183 (311)
+...|+|+|||.|.++..|+. . ++.+++|||.. +.+.+++++.+ . .++.+..++..+.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 457899999999999999998 4 78999999964 44555554444 3 5677777665543
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00097 Score=64.63 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=67.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+..++|+|||-|......+.- ....++|+|.+.. +...+...+++| ..++.+|.... |++++++|.+.+
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-----~fedn~fd~v~~ 184 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-----PFEDNTFDGVRF 184 (364)
T ss_pred cccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-----CCCccccCcEEE
Confidence 457999999999999999874 4678999997532 222223334433 33467777665 557899999876
Q ss_pred e-----CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 Q-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~-----fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+ -|++ ..+++|++|+++|||++...
T Consensus 185 ld~~~~~~~~-------------~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 LEVVCHAPDL-------------EKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EeecccCCcH-------------HHHHHHHhcccCCCceEEeH
Confidence 5 2333 38899999999999999873
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=54.63 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++..|||||+|+|.++..|++.. .+++++|......+.+++. ..+|+.++.+|+..+-.... ....-..|+.|.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~--~~~~~~~vv~Nl 105 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL--LKNQPLLVVGNL 105 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH--CSSSEEEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh--hcCCceEEEEEe
Confidence 46789999999999999999986 7999999987777776653 34799999999998721100 123455666775
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccC
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkp 231 (311)
|- -+...++.++...-+.
T Consensus 106 Py-----------~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 106 PY-----------NISSPILRKLLELYRF 123 (262)
T ss_dssp TG-----------TGHHHHHHHHHHHGGG
T ss_pred cc-----------cchHHHHHHHhhcccc
Confidence 42 1334666666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=51.02 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=77.4
Q ss_pred EeccccHHHHHHHhhCC-CCeEEEEchH---------HHHHHHHHHcCCCcEE-EEEccccchhhhhhccCCCcEeEEEE
Q 021567 132 IGSGNGLFLLGMARKRK-DLNFLGLELV---------THCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 132 IGcGtG~~~~~lA~~~p-~~~vvGiDi~---------~~a~~~a~~~~~~Nv~-f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+|=|.=.|+..||+.+. ..++++.-.. ..+..+++...-.++. ..-.||..+ ...+......||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l-~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKL-HKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcc-cccccccCCcCCEEEE
Confidence 56677777888888866 6677766531 1233333322222333 346788887 3333335688999999
Q ss_pred eCCCCCCCCchh-----hhhhhHHHHHHHHHhcccCCeEEEEEe-CcHHHHHHHHHHH-HhcCCC
Q 021567 201 QCPNPDFNRPEH-----RWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQF-LEYGKG 258 (311)
Q Consensus 201 ~fpdP~~k~~h~-----krRl~~~~~l~~i~rvLkpGG~l~~~t-D~~~~~~~~~~~l-~~~g~~ 258 (311)
|||-.--...+. +.|.+-..|++.+.++|+++|.+++.- +.++|-.|-++.+ .+.|+.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~ 146 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLV 146 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCE
Confidence 999664111111 112233799999999999999999853 4456666666555 445554
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.046 Score=48.77 Aligned_cols=123 Identities=16% Similarity=0.129 Sum_probs=88.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++..||=+|..+|+.....+.-.++..+.|||.+.+..+ .+++ -+|+--+.+||..-.. . ..--+.+|+|+.
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~P~~-Y-~~~Ve~VDviy~ 151 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARKPEK-Y-RHLVEKVDVIYQ 151 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCCcHH-h-hhhcccccEEEE
Confidence 578999999999999999999988889999998754433 3333 3699999999987521 1 112356899987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE---------eCcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---------SDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~---------tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
....|. ..+-+...+..-||+||.+++. .|-+..++..++.+++.++..+.
T Consensus 152 DVAQp~----------Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 152 DVAQPN----------QAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred ecCCch----------HHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 655442 1135667778889999966653 25567788788888888876553
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.027 Score=55.17 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=79.8
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||.++..|.=+..+|.. .-...+++.|.... ...++.+.|.+|...+..|...+-...| .++||.|.
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~---~~~fDRVL 317 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF---PGSFDRVL 317 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc---Ccccceee
Confidence 5789999999999999999876 33568999997543 3345566789999999999987633333 34999998
Q ss_pred EeCCC---------CCCCCchhh-----hhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN---------PDFNRPEHR-----WRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd---------P~~k~~h~k-----rRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|- +-.+..... .-.+++++|....+.+++||+|+-+|
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 76442 222211100 12345899999999999999999875
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0033 Score=56.55 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=51.8
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.|+|.-||-|..+++.|.++| .|++||++.. |..+++-.|++ .|.|++||..++...+ .++...+|.|+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l-q~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL-KADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH-hhhhheeeeeec
Confidence 57899999999999999999975 7899998654 33344445664 6999999999986542 223334555543
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0093 Score=57.23 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=61.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++..+|||||++|.++..|+++ +..|+|||....+ ..+ ...++|..+.+|..... | ..+.+|.++.....
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-~~L--~~~~~V~h~~~d~fr~~----p-~~~~vDwvVcDmve 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-QSL--MDTGQVEHLRADGFKFR----P-PRKNVDWLVCDMVE 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-Hhh--hCCCCEEEEeccCcccC----C-CCCCCCEEEEeccc
Confidence 4789999999999999999998 5699999954422 222 23367999999987762 2 25678999877543
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHD 232 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpG 232 (311)
.- .+..+.+.++|..|
T Consensus 281 ~P------------~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 KP------------ARVAELMAQWLVNG 296 (357)
T ss_pred CH------------HHHHHHHHHHHhcC
Confidence 21 25566667777665
|
|
| >PLN02282 phosphoglycerate kinase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0058 Score=59.82 Aligned_cols=97 Identities=25% Similarity=0.401 Sum_probs=69.4
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCce-eEEEcchhhHHHHH-hhccchhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTC-NVTVIGSMACKAIA-KVSSSIFG 82 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~-~~~~s~~~ 82 (311)
.++--|| ++..+.+||.|+|-||.-.--.+++..|...|++.++.++..+| .+...|+++++... ++.++.+
T Consensus 296 ~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~t~~~a~sivGGGdt~aA~~~~g~~~~~s- 374 (401)
T PLN02282 296 MGLDIGPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMS- 374 (401)
T ss_pred eeeccCHHHHHHHHHHHhhCCEEEEECCcCCccCcchhHHHHHHHHHHHHhhcCCCEEEEeCcHHHHHHHHcCCcCCce-
Confidence 4555566 67899999999999999877788999999999999999885544 44444555544432 2322221
Q ss_pred hhhhhhhhhhhhhhhhccCCCchhhh
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~~l~ 108 (311)
| ...+....++++-|+..|+.+++.
T Consensus 375 h-vSTGGGA~Le~LeGk~LPgi~aL~ 399 (401)
T PLN02282 375 H-ISTGGGASLELLEGKPLPGVLALD 399 (401)
T ss_pred E-EeCchHHHHHHHcCCCcchHHHhh
Confidence 1 234568889999999999876554
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.017 Score=55.32 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=63.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH-HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT-HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~-~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
-...+|+|.|.|..+..+...+|+ +-|++... ...+.+.... +.|+.+-+|...- .| . -|+|++...-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~----~P--~--~daI~mkWiL 246 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQD----TP--K--GDAIWMKWIL 246 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CCcceeccccccc----CC--C--cCeEEEEeec
Confidence 478999999999999999999986 55555432 2233332222 4578888886543 23 2 2377776432
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
....+.+ . -+||+.++..|+|||.+++.
T Consensus 247 hdwtDed----c--vkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 247 HDWTDED----C--VKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred ccCChHH----H--HHHHHHHHHhCCCCCEEEEE
Confidence 2111111 1 38999999999999999985
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0018 Score=57.77 Aligned_cols=89 Identities=26% Similarity=0.334 Sum_probs=62.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe---
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ--- 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~--- 201 (311)
+..++||||.|.|+++..++..+. .|.+.|+|..++.+.+..+. ||-- ..+.. + .+-.+|+|...
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk~y-nVl~---~~ew~-~-----t~~k~dli~clNlL 179 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNY-NVLT---EIEWL-Q-----TDVKLDLILCLNLL 179 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhcCC-ceee---ehhhh-h-----cCceeehHHHHHHH
Confidence 457899999999999999998864 58889999999988876654 3211 11111 1 24456776432
Q ss_pred --CCCCCCCCchhhhhhhHHHHHHHHHhcccC-CeEEEEE
Q 021567 202 --CPNPDFNRPEHRWRMVQRSLVEAVSDLLVH-DGKVFLQ 238 (311)
Q Consensus 202 --fpdP~~k~~h~krRl~~~~~l~~i~rvLkp-GG~l~~~ 238 (311)
+-+| -.+|+.|+.+|.| +|+++++
T Consensus 180 DRc~~p-------------~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 180 DRCFDP-------------FKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HhhcCh-------------HHHHHHHHHHhccCCCcEEEE
Confidence 1233 2889999999999 8988774
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.068 Score=49.15 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=53.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchH-------HHHHHHHHHc---C--C-CcEEEEEccccchhhhhhccCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV-------THCRDSLQLS---G--I-TNGYFIATNATSTFRSIVASYP 192 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~-------~~a~~~a~~~---~--~-~Nv~f~~~Da~~ll~~~~~~~~ 192 (311)
.+.|||.=+|+|..++.+|.+ ++.|+++|.+ ...++++... + + .+++++++|+.+.+.. . .
T Consensus 89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~-~---~ 162 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-I---T 162 (250)
T ss_pred CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh-C---C
Confidence 468999999999999999988 6779999943 3444444211 2 2 5799999999998764 2 3
Q ss_pred CcEeEEEEe
Q 021567 193 GKLILVSIQ 201 (311)
Q Consensus 193 ~s~D~V~i~ 201 (311)
.++|+||+.
T Consensus 163 ~~fDVVYlD 171 (250)
T PRK10742 163 PRPQVVYLD 171 (250)
T ss_pred CCCcEEEEC
Confidence 479999875
|
|
| >PTZ00005 phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.015 Score=57.29 Aligned_cols=96 Identities=24% Similarity=0.477 Sum_probs=65.8
Q ss_pred eeccCCc-----hhhHhhhhceeEEEcccc-ccccccccchhHHHHHHHhhhhcC-ceeEEEcchhhHHHHH-hhccchh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQG-TCNVTVIGSMACKAIA-KVSSSIF 81 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~s~~ 81 (311)
.++--|| ++.++.+||+|+|-||.- |.++ ++..|..+|++.++.+++. ...+...|+++++.-. ++.+...
T Consensus 312 ~~lDIGp~Ti~~~~~~i~~akTV~wNGP~GvFE~~-~F~~GT~~i~~aia~~t~~~a~sivGGGdt~aAi~~~g~~~~~s 390 (417)
T PTZ00005 312 MGLDAGPKSIEEFAEAILRAKTIVWNGPQGVFEMP-NFAKGSIAMLDAVVKATEKGAITIVGGGDTASLVEKTGAANKVS 390 (417)
T ss_pred EEeccCHHHHHHHHHHHhhCCEEEEECCCccccCC-cchHHHHHHHHHHHHhccCCCEEEEeCcHHHHHHHHcCCCCCCc
Confidence 4455566 678999999999999998 8875 7999999999999988754 4455555566665533 3322211
Q ss_pred hhhhhhhhhhhhhhhhhccCCCchhhh
Q 021567 82 GLNMVESGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 82 ~~~~fe~~a~~wd~~~~r~~~~~~~l~ 108 (311)
| ...+....-+++-|+..|+.+++.
T Consensus 391 -h-vSTGGGA~Le~LeGk~LPgv~aL~ 415 (417)
T PTZ00005 391 -H-VSTGGGASLELLEGKELPGVVALS 415 (417)
T ss_pred -e-EcCchHHHHHHHcCCCcchHHHhh
Confidence 1 122346677778888888765443
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.12 Score=46.58 Aligned_cols=118 Identities=11% Similarity=0.139 Sum_probs=86.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+..+.||||=.|.+...|-+.++...+++.|++ ..|.+.+.+.++ +.+....+|....+. .+..+|.+++
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-----~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-----LEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-----ccCCcCEEEE
Confidence 344999999999999999999999999999986 456666666664 457777888754421 3557899887
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
--.-- .+ -.++|++-.+.|+.--+++++..+..+ +.++.+..++|...
T Consensus 92 AGMGG---------~l-I~~ILee~~~~l~~~~rlILQPn~~~~--~LR~~L~~~~~~I~ 139 (226)
T COG2384 92 AGMGG---------TL-IREILEEGKEKLKGVERLILQPNIHTY--ELREWLSANSYEIK 139 (226)
T ss_pred eCCcH---------HH-HHHHHHHhhhhhcCcceEEECCCCCHH--HHHHHHHhCCceee
Confidence 62211 11 247888888888766788888766544 77888888888644
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.015 Score=54.94 Aligned_cols=107 Identities=18% Similarity=0.341 Sum_probs=45.3
Q ss_pred hhhhhhhhhhccCCCch-hhhhhCCCchhhH-hhcCC-----CCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH
Q 021567 89 GSAVWEFLKGRMLPGVS-ALDRAFPFDIDWS-AAYHD-----PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 161 (311)
Q Consensus 89 ~a~~wd~~~~r~~~~~~-~l~~~~~~~~~~~-~~f~~-----~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a 161 (311)
.-..||.-.+++-|... .++ -+.|. +.... +..-++||||||.-++---|+.+..+++++|.|+.+.+
T Consensus 64 gl~~wdiP~~~LcP~iP~R~n-----Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~s 138 (299)
T PF05971_consen 64 GLDVWDIPEGRLCPPIPNRLN-----YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKS 138 (299)
T ss_dssp --------TTS----HHHHHH-----HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHH
T ss_pred CCccccCCCCCcCCCCchhHH-----HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHH
Confidence 56678988888888761 111 11221 11111 12458999999999885444444338999999987655
Q ss_pred HHH----HHHc-CCC-cEEEEEcccc-chhhhhhccCCCcEeEEEEe
Q 021567 162 RDS----LQLS-GIT-NGYFIATNAT-STFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 162 ~~~----a~~~-~~~-Nv~f~~~Da~-~ll~~~~~~~~~s~D~V~i~ 201 (311)
++. ++++ ++. .|+++...-. .++..+.. .+..+|....|
T Consensus 139 l~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~dftmCN 184 (299)
T PF05971_consen 139 LESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFDFTMCN 184 (299)
T ss_dssp HHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EEEEEE-
T ss_pred HHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceeeEEecC
Confidence 544 4455 553 5888765432 33332221 34578877666
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.072 Score=49.81 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=59.1
Q ss_pred CeEEEEeccccHH-HHHHHhh-CCCCeEEEEchHHHHHHHHHH-----cCC-CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 127 PLVVDIGSGNGLF-LLGMARK-RKDLNFLGLELVTHCRDSLQL-----SGI-TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 127 ~~vLDIGcGtG~~-~~~lA~~-~p~~~vvGiDi~~~a~~~a~~-----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+|+=||||.=-+ ++.+|++ .++..|+++|+.+.|.+.+++ .++ ..+.|+.+|+.+... .-..+|.|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~-----dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY-----DLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----G----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----ccccCCEE
Confidence 5899999996555 5677765 467899999998777665532 233 469999999987621 23578999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.---.. +...| .++++.+.+.++||..+.+.+
T Consensus 197 ~lAalVg~--~~e~K-----~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 197 FLAALVGM--DAEPK-----EEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EE-TT-S------SH-----HHHHHHHHHHS-TTSEEEEEE
T ss_pred EEhhhccc--ccchH-----HHHHHHHHhhCCCCcEEEEec
Confidence 87632110 11122 488999999999999999986
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.01 Score=52.26 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=62.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...+.|+|+|+|.++.-.|.. ..+|++||....-.+.+.+ .|..|++.+.+||.+. .+ ..-|.|..-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y-----~f--e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY-----DF--ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc-----cc--cccceeHHH
Confidence 468999999999999888776 4689999986554444443 4678999999999987 21 234555433
Q ss_pred CCCCCCCCchhhhhhhHH---HHHHHHHhcccCCeEEE
Q 021567 202 CPNPDFNRPEHRWRMVQR---SLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~---~~l~~i~rvLkpGG~l~ 236 (311)
+-|-- ++.+ ..++.+..-|+.++.++
T Consensus 104 mlDTa---------Li~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 104 MLDTA---------LIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HhhHH---------hhcccccHHHHHHHHHhhcCCccc
Confidence 32221 1111 44555556677777765
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.039 Score=49.39 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=52.6
Q ss_pred CCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHH--HHHHHHcCC-CcEEEEEccccchhhhhhccC----CCc
Q 021567 126 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHC--RDSLQLSGI-TNGYFIATNATSTFRSIVASY----PGK 194 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a--~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~----~~s 194 (311)
..+|+|+|.-.|..++.+|.. .++.+|+|||+..+. .+..+.+.+ +++++++||..+. ....+.. ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~-~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDP-EIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSST-HHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCH-HHHHHHHHhhccCC
Confidence 478999999999999988764 378899999984222 222222222 5799999998875 2222110 112
Q ss_pred EeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 195 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 195 ~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-..|+ . | .+|.+..+ -.-|+.+...+++|+++++.
T Consensus 112 ~vlVi-l--D-----s~H~~~hv-l~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 112 PVLVI-L--D-----SSHTHEHV-LAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SEEEE-E--S-----S----SSH-HHHHHHHHHT--TT-EEEET
T ss_pred ceEEE-E--C-----CCccHHHH-HHHHHHhCccCCCCCEEEEE
Confidence 12222 2 2 23333333 25566799999999999874
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.075 Score=50.40 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=57.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--C-CCcEEEEEccccchhhhhhcc-CCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--G-ITNGYFIATNATSTFRSIVAS-YPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~-~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i 200 (311)
++.+++|-=||.|..+..+++..|+..++|+|....|++.+++. . ..++.+++++-.++.. .+.. ...++|.|++
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~-~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE-HLDELLVTKIDGILV 98 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH-HHHhcCCCcccEEEE
Confidence 45799999999999999999988779999999888777766532 1 2479999999888643 2321 2356888865
Q ss_pred e
Q 021567 201 Q 201 (311)
Q Consensus 201 ~ 201 (311)
.
T Consensus 99 D 99 (305)
T TIGR00006 99 D 99 (305)
T ss_pred e
Confidence 4
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.044 Score=51.04 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=80.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH-------HH-------------------------HHH-----
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR-------DS-------------------------LQL----- 167 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~-------~~-------------------------a~~----- 167 (311)
...+||==|||.|.++..+|.+ +..+.|.|.|-.++ .. .+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4578999999999999999998 67999999643221 10 000
Q ss_pred -------cCCCcEEEEEccccchhhhhhccCCCcEeEEE-EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-
Q 021567 168 -------SGITNGYFIATNATSTFRSIVASYPGKLILVS-IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ- 238 (311)
Q Consensus 168 -------~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~-i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~- 238 (311)
....|+.+..||-.++... +...+++|.|. ..|.|-- +.+ -++++.|.++|||||..+=.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~--~~~~~~~d~VvT~FFIDTA-------~Ni--~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGP--DENKGSFDVVVTCFFIDTA-------ENI--IEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCC--cccCCcccEEEEEEEeech-------HHH--HHHHHHHHHHhccCCEEEecC
Confidence 0123567777776665321 01136888874 4555542 122 38999999999999965411
Q ss_pred ------eC--------cHHHHHHHHHHHHhcCCCce
Q 021567 239 ------SD--------IEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 239 ------tD--------~~~~~~~~~~~l~~~g~~~~ 260 (311)
.+ .+--.+++.+.++..||..+
T Consensus 203 PLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~ 238 (270)
T PF07942_consen 203 PLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIE 238 (270)
T ss_pred CccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEE
Confidence 11 12226788888888898765
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.032 Score=54.71 Aligned_cols=97 Identities=23% Similarity=0.433 Sum_probs=67.5
Q ss_pred eeeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcC-ceeEEEcchhhHHHHH-hhccchh
Q 021567 9 LSILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQG-TCNVTVIGSMACKAIA-KVSSSIF 81 (311)
Q Consensus 9 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~s~~ 81 (311)
..++--|| ++..+.++|.|+|-||.-.--.+++..|...|++.++.+++. ..++...|+++++.-. ++.+..+
T Consensus 292 ~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~~~~~a~sivGGGdt~aa~~~~g~~~~~s 371 (397)
T cd00318 292 WMGLDIGPKTIELFAEVIRKAKTIVWNGPMGVFEFPAFAKGTKAIADAIAAATKAGAFSIIGGGDTAAAAEKFGLADKIS 371 (397)
T ss_pred CEEEeeCHHHHHHHHHHHhhCCEEEEECCCcCccCCcccHHHHHHHHHHHHhccCCCEEEEeCcHHHHHHHHcCCCCCce
Confidence 44555666 578899999999999997766889999999999998887754 4444455555554432 3333222
Q ss_pred hhhhhhhhhhhhhhhhhccCCCchhh
Q 021567 82 GLNMVESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 82 ~~~~fe~~a~~wd~~~~r~~~~~~~l 107 (311)
| ...+....++++-|+..|+.+++
T Consensus 372 -h-vSTGGGA~Le~LeGk~LPgi~aL 395 (397)
T cd00318 372 -H-VSTGGGASLELLEGKELPGVAAL 395 (397)
T ss_pred -E-EcCchHHHHHHHcCCCCchHHhh
Confidence 1 22345777899999988887544
|
This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.12 Score=48.11 Aligned_cols=120 Identities=13% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCeEEEEecccc--HHHHHHHhh-CCCCeEEEEchHHHHHH--HHHHcCCCc--EEEEEccccchhhhhhcc--------
Q 021567 126 QPLVVDIGSGNG--LFLLGMARK-RKDLNFLGLELVTHCRD--SLQLSGITN--GYFIATNATSTFRSIVAS-------- 190 (311)
Q Consensus 126 ~~~vLDIGcGtG--~~~~~lA~~-~p~~~vvGiDi~~~a~~--~a~~~~~~N--v~f~~~Da~~ll~~~~~~-------- 190 (311)
-..+||||||-= ...-+.|++ .|+++|+=+|.....+. ++.-.+-++ ..++++|+.+. ..++..
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p-~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP-EAILAHPEVRGLLD 147 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H-HHHHCSHHHHCC--
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH-HHHhcCHHHHhcCC
Confidence 368999999943 345666665 89999999996543332 222233345 89999999885 333311
Q ss_pred CCCcEeEEEE---eC-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe---C-cHHHHHHHHHHHHhcC
Q 021567 191 YPGKLILVSI---QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---D-IEEVMLRMKQQFLEYG 256 (311)
Q Consensus 191 ~~~s~D~V~i---~f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t---D-~~~~~~~~~~~l~~~g 256 (311)
.+..+-++.+ +| +|. ... ..++..+...|.||.+|.++. | .....+.+.+.+.+.+
T Consensus 148 ~~rPVavll~~vLh~v~D~----~dp------~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDD----DDP------AGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp TTS--EEEECT-GGGS-CG----CTH------HHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred CCCCeeeeeeeeeccCCCc----cCH------HHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 1333444332 22 221 111 488999999999999999963 2 2223344555555554
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.26 Score=46.42 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=87.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH------HcC--CCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ------LSG--ITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~------~~~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..++|=||-|-|.+....+++-.-.+++-+|+...-.+..+ ..| -+.|.++-||...+++.. ..+.+|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---~~~~~d 197 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---KENPFD 197 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---ccCCce
Confidence 467899999999999999888722236666775332222111 122 356999999999886542 478999
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
+|.+--.||.- +...+..+.+...+.+.||+||++..+.|+.++.....+...+
T Consensus 198 Vii~dssdpvg----pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~ 251 (337)
T KOG1562|consen 198 VIITDSSDPVG----PACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRS 251 (337)
T ss_pred EEEEecCCccc----hHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHH
Confidence 99998888853 2234566789999999999999999998886665544444433
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.12 Score=51.64 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=71.0
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhccCCCcEeEEEE----
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSI---- 200 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i---- 200 (311)
++|-+|||.=.+...+-+.. ...++-+|+|..+.+.+...+ -.-..+...|+..+ .+++.+||.|..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l-----~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL-----VFEDESFDIVIDKGTL 124 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhc-----cCCCcceeEEEecCcc
Confidence 79999999999999887762 346889998877666654433 23478899998887 447899998852
Q ss_pred --eCC---CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 --QCP---NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 --~fp---dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|. ++|.+ ++ ...-+.+++|+|+|||++...|
T Consensus 125 Dal~~de~a~~~~--~~-----v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 125 DALFEDEDALLNT--AH-----VSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ccccCCchhhhhh--HH-----hhHHHhhHHHHhccCCEEEEEE
Confidence 122 22211 11 2577899999999999987765
|
|
| >PRK00073 pgk phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.033 Score=54.40 Aligned_cols=94 Identities=23% Similarity=0.473 Sum_probs=64.2
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchhhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIFGL 83 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~~~ 83 (311)
.++--|| ++..+.++|.|+|-||.-.--.+++..|..+|++.++..+ .+++...|+++++... ++.+... |
T Consensus 288 ~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~~--a~sivGGGdt~aa~~~~g~~~~~s-h 364 (389)
T PRK00073 288 MILDIGPKTIELFAEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEST--AFSIIGGGDTAAAVEKLGLADKFS-H 364 (389)
T ss_pred eeeecCHHHHHHHHHHHhhCCEEEEECCCCccccccchHHHHHHHHHHHhcC--CeEEEcCCHHHHHHHHcCCCCCcc-E
Confidence 4444565 5788999999999999976667789999999999988743 5667777777665543 3322211 1
Q ss_pred hhhhhhhhhhhhhhhccCCCchhh
Q 021567 84 NMVESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 84 ~~fe~~a~~wd~~~~r~~~~~~~l 107 (311)
...+....-+++-|+..|+.+++
T Consensus 365 -iSTGGGA~Le~LeGk~LPgv~aL 387 (389)
T PRK00073 365 -ISTGGGASLEFLEGKELPGVAAL 387 (389)
T ss_pred -EcCCcHHHHHHHcCCCcchHHHh
Confidence 12334566777777777776443
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.049 Score=54.52 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=77.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.-..|+|...|.|.|+.+|.+. | |.-+-.+ ...+..+-.+|+-. -..+. -+.|+.++.++|+++.
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG------~yhDW-CE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIG------VYHDW-CEAFSTYPRTYDLLHA 433 (506)
T ss_pred ceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccch------hccch-hhccCCCCcchhheeh
Confidence 3468999999999999999865 2 3333222 12333344455411 11121 2235668999999976
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
... +.. .+.|-.-..++-|+-|+|+|||.+++. |..+..+.+...+....|...
T Consensus 434 ~~l---fs~--~~~rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 434 DGL---FSL--YKDRCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhh---hhh--hcccccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhCcceEE
Confidence 522 111 112233368899999999999999995 777788888888888877654
|
; GO: 0008168 methyltransferase activity |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.083 Score=47.93 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=52.2
Q ss_pred EEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCC-ch-hhhh-------hhHHHHHHHHHhcccCCeEEEEEeCcHH
Q 021567 173 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-PE-HRWR-------MVQRSLVEAVSDLLVHDGKVFLQSDIEE 243 (311)
Q Consensus 173 v~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~-~h-~krR-------l~~~~~l~~i~rvLkpGG~l~~~tD~~~ 243 (311)
.++.++|+.+.+.. + +++++|+|+.. .|+... +. ..+. -....++++++|+|||||.+++-+++..
T Consensus 2 ~~l~~gD~le~l~~-l--pd~SVDLIiTD--PPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~ 76 (227)
T PRK13699 2 SRFILGNCIDVMAR-F--PDNAVDFILTD--PPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR 76 (227)
T ss_pred CeEEechHHHHHHh-C--CccccceEEeC--CCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc
Confidence 36789999988664 3 58999999775 333210 00 0111 1125788999999999999987666543
Q ss_pred HHHHHHHHHHhcCCCc
Q 021567 244 VMLRMKQQFLEYGKGK 259 (311)
Q Consensus 244 ~~~~~~~~l~~~g~~~ 259 (311)
. ......+++.|+..
T Consensus 77 ~-~~~~~al~~~GF~l 91 (227)
T PRK13699 77 V-DRFMAAWKNAGFSV 91 (227)
T ss_pred H-HHHHHHHHHCCCEE
Confidence 3 33455667778753
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.25 Score=41.54 Aligned_cols=85 Identities=9% Similarity=0.083 Sum_probs=51.0
Q ss_pred eEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch--hhhhhhHHHHHH
Q 021567 151 NFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE--HRWRMVQRSLVE 223 (311)
Q Consensus 151 ~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h--~krRl~~~~~l~ 223 (311)
+|+|.|+-++|++.. ++.+. .++.+++.+=+.+ ...++ ++.+|.+++|+--- |...| .-+...+-..++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l-~~~i~--~~~v~~~iFNLGYL-PggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL-DEYIP--EGPVDAAIFNLGYL-PGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG-GGT----S--EEEEEEEESB--CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH-HhhCc--cCCcCEEEEECCcC-CCCCCCCCcCcHHHHHHHH
Confidence 589999976666554 44555 4699998887666 44442 36899999885210 11100 001222357899
Q ss_pred HHHhcccCCeEEEEEe
Q 021567 224 AVSDLLVHDGKVFLQS 239 (311)
Q Consensus 224 ~i~rvLkpGG~l~~~t 239 (311)
.+.++|+|||.+.+..
T Consensus 77 ~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 77 AALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHhhccCCEEEEEE
Confidence 9999999999999875
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.43 Score=37.68 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=66.3
Q ss_pred ccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 134 SGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 134 cGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
||.|.++..+++. ..+..++.+|..+...+.+...+ +.++.+|+.+. ..+-...-...+.+++..++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~---~~~i~gd~~~~-~~l~~a~i~~a~~vv~~~~~d~----- 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG---VEVIYGDATDP-EVLERAGIEKADAVVILTDDDE----- 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT---SEEEES-TTSH-HHHHHTTGGCESEEEEESSSHH-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc---cccccccchhh-hHHhhcCccccCEEEEccCCHH-----
Confidence 6778888888775 22348999999887777777665 67999999875 2111112356788887765431
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHH
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLR 247 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~ 247 (311)
..-.+....+.+.|...++...++..+.+.
T Consensus 75 ------~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~ 104 (116)
T PF02254_consen 75 ------ENLLIALLARELNPDIRIIARVNDPENAEL 104 (116)
T ss_dssp ------HHHHHHHHHHHHTTTSEEEEEESSHHHHHH
T ss_pred ------HHHHHHHHHHHHCCCCeEEEEECCHHHHHH
Confidence 123455566778899999999888766443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.19 Score=45.89 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=47.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEch-------HHHHHHHHHHcCC------CcEEEEEccccchhhhhhccCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQLSGI------TNGYFIATNATSTFRSIVASYP 192 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi-------~~~a~~~a~~~~~------~Nv~f~~~Da~~ll~~~~~~~~ 192 (311)
.+.|||.=+|-|.=++-+|.. +.+|+|+|- ...+++++....- .+++++++|+.+++. .++
T Consensus 76 ~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~ 149 (234)
T PF04445_consen 76 RPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD 149 (234)
T ss_dssp ---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred CCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence 368999999999999999976 678999993 3566676654322 379999999999864 247
Q ss_pred CcEeEEEEe
Q 021567 193 GKLILVSIQ 201 (311)
Q Consensus 193 ~s~D~V~i~ 201 (311)
.++|+||+.
T Consensus 150 ~s~DVVY~D 158 (234)
T PF04445_consen 150 NSFDVVYFD 158 (234)
T ss_dssp S--SEEEE-
T ss_pred CCCCEEEEC
Confidence 899999874
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.17 Score=47.23 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=50.6
Q ss_pred CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch-----h---hhhh--hHHHHHHHHHhcccCCeEEEEEeC
Q 021567 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE-----H---RWRM--VQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 171 ~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h-----~---krRl--~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
.+-.++++|+.+.+.. + ++++||+|++. .|...... . ..+. ....++.++.++|||||.+++.++
T Consensus 7 ~~~~i~~gD~~~~l~~-l--~~~siDlIitD--PPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKK-I--PSESVDLIFAD--PPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHh-c--ccCcccEEEEC--CCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3557899999997643 3 57899999886 23221100 0 0011 125788999999999999999877
Q ss_pred cHHHHHHHHHHHHhcCC
Q 021567 241 IEEVMLRMKQQFLEYGK 257 (311)
Q Consensus 241 ~~~~~~~~~~~l~~~g~ 257 (311)
..... + ...+.+.++
T Consensus 82 ~~~~~-~-~~~~~~~~f 96 (284)
T PRK11524 82 TENMP-F-IDLYCRKLF 96 (284)
T ss_pred chhhh-H-HHHHHhcCc
Confidence 65432 2 333445554
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.31 Score=47.58 Aligned_cols=114 Identities=12% Similarity=0.182 Sum_probs=77.3
Q ss_pred CeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHH----HcCCCc--EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 127 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQ----LSGITN--GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~----~~~~~N--v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
-++||-=+|+|-=++++|...+ ...++.-|+++.|.+.++ .+++++ ++..+.||..++. .....||.|-
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----~~~~~fD~ID 126 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----SRQERFDVID 126 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----HSTT-EEEEE
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----hccccCCEEE
Confidence 4799999999999999999844 468999999877665554 456654 8999999999863 1367899997
Q ss_pred Ee-CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHHHH-HHHHHHHhcCC
Q 021567 200 IQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVML-RMKQQFLEYGK 257 (311)
Q Consensus 200 i~-fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~~~-~~~~~l~~~g~ 257 (311)
+. |-.| ..||+...+.++.||.+.+. ||...+.. +...-+..+|.
T Consensus 127 lDPfGSp-------------~pfldsA~~~v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 174 (377)
T PF02005_consen 127 LDPFGSP-------------APFLDSALQAVKDGGLLCVTATDTAVLCGSYPEKCFRKYGA 174 (377)
T ss_dssp E--SS---------------HHHHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSS
T ss_pred eCCCCCc-------------cHhHHHHHHHhhcCCEEEEeccccccccCCChhHHHHhcCC
Confidence 74 2222 38999999999999999985 67655432 22334455553
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.3 Score=47.29 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=80.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|+|-=+|||.=++++|..-+...++.-|+++.|.+.+++ +...+...+..||..++.+ ....||.|-+.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~----~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE----LHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh----cCCCccEEecC
Confidence 468999999999999999999877799999998888776654 3345677778999998653 24678888663
Q ss_pred -CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHH
Q 021567 202 -CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV 244 (311)
Q Consensus 202 -fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~ 244 (311)
|-.| ..|++...+.++.||.+.+. ||...+
T Consensus 129 PFGSP-------------aPFlDaA~~s~~~~G~l~vTATD~a~L 160 (380)
T COG1867 129 PFGSP-------------APFLDAALRSVRRGGLLCVTATDTAPL 160 (380)
T ss_pred CCCCC-------------chHHHHHHHHhhcCCEEEEEecccccc
Confidence 3333 28999999999999999984 676544
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.048 Score=43.78 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=29.7
Q ss_pred hhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEch
Q 021567 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL 157 (311)
Q Consensus 116 ~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi 157 (311)
-|.+.+.....+..+|||||+|-+.--|.+. +..=.|+|.
T Consensus 49 LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 49 LWRDMYGEQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred HHhcccCCCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 3555544334578999999999998888876 456689996
|
; GO: 0008168 methyltransferase activity |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.14 Score=49.13 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=62.5
Q ss_pred CCeEEEEec-cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGS-GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGc-GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..|+=+|+ |-|.+++++|+.. .++++++|.++.-++.+++.|.+.+.--. |.... .. . .+.+|.++..-+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~-~~-~---~~~~d~ii~tv~- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSS-DSDAL-EA-V---KEIADAIIDTVG- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcC-Cchhh-HH-h---HhhCcEEEECCC-
Confidence 556665555 5778899999976 49999999999888888887765322222 32222 21 1 234888876644
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+ .-++...+.|++||.+.+.
T Consensus 239 ~--------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 P--------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred h--------------hhHHHHHHHHhcCCEEEEE
Confidence 3 4577888999999999884
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.82 Score=42.60 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=66.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
..+|||+|||+|.-+.+..+.++ -..++.+|.+..+++.++. ....+..-.. ....+.....+ -..-|+|++.+
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~--~~~~DLvi~s~ 110 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAE-WRRVLYRDFLP--FPPDDLVIASY 110 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccch-hhhhhhccccc--CCCCcEEEEeh
Confidence 46899999999999888888776 3479999988777665432 1111111100 00001110011 11228888776
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcH---HHHHHHHHHHHhcCCC
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIE---EVMLRMKQQFLEYGKG 258 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~---~~~~~~~~~l~~~g~~ 258 (311)
.--.... ..| .++++.+.+.+.+ .+++. -... .....+.+.+.+.|+.
T Consensus 111 ~L~EL~~---~~r---~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~ 162 (274)
T PF09243_consen 111 VLNELPS---AAR---AELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAH 162 (274)
T ss_pred hhhcCCc---hHH---HHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCc
Confidence 4222222 112 4788888887766 55553 2222 2344566777666654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.35 Score=46.78 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=62.8
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-CCCcEEEEEcc-ccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATN-ATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~~~Nv~f~~~D-a~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+..||.+|||. |..+..+|+......++++|.++...+.+++. +...+.....+ ...-+.... ....+|.++-.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~--~~~~~D~vld~ 261 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELT--GGRGPDVCIDA 261 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHc--CCCCCCEEEEC
Confidence 357899999998 99999999987544699999877767766655 32211111111 111111111 22357766432
Q ss_pred CCC-----CCCCCchhh--hhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPN-----PDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpd-----P~~k~~h~k--rRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
... +|.+-..+. .+--....++++.+.|+|+|.++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 110 000000000 00001356788899999999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.18 Score=40.45 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=60.4
Q ss_pred cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccch---hhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 135 GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 135 GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~l---l~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
|.|..++.+|+... .+++++|.++.-++.+++.|.+. ++..+-.++ +.... ....+|.|+-.-..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~--~~~~~~~~~~~~i~~~~--~~~~~d~vid~~g~------- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH--VIDYSDDDFVEQIRELT--GGRGVDVVIDCVGS------- 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE--EEETTTSSHHHHHHHHT--TTSSEEEEEESSSS-------
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc--ccccccccccccccccc--ccccceEEEEecCc-------
Confidence 56899999999875 99999999988888888777432 233222222 22222 23478888654321
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+..++....+|+|+|.+.+..
T Consensus 69 -------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 -------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -------HHHHHHHHHHEEEEEEEEEES
T ss_pred -------HHHHHHHHHHhccCCEEEEEE
Confidence 377888999999999999864
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.19 Score=44.65 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=63.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|+|+|-..+.-|+.. ...++..|+...+.+.+. .++ -++.|...|+.- .+..+|++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~ang-v~i~~~~~d~~g--------~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANG-VSILFTHADLIG--------SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhcc-ceeEEeeccccC--------CCcceeEEEe
Confidence 46899999999999999988874 356888887655555443 333 468888887643 3678999875
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
. |-.+....+ .+++....++...|-.+++-+..+.|
T Consensus 149 g--Dlfy~~~~a------~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 149 G--DLFYNHTEA------DRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred e--ceecCchHH------HHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 4 322221111 24555334444445455554444544
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.18 Score=42.85 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=55.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..-|||+|=|+|..=-.|-+.+|+..++.+|..-.+.-.+. .+.=.++.||+.+.++. .+........++..+-.-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~---P~~~~~ilGdi~~tl~~-~~~~g~~a~laHaD~G~g 104 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST---PPEEDLILGDIRETLPA-LARFGAGAALAHADIGTG 104 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG------GGGEEES-HHHHHHH-HHHH-S-EEEEEE----S
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC---CchHheeeccHHHHhHH-HHhcCCceEEEEeecCCC
Confidence 35699999999999999999999999999996433322211 12235889999988765 222245556665543211
Q ss_pred CCCCchhhhhhhH-HHHHHHHHhcccCCeEEE
Q 021567 206 DFNRPEHRWRMVQ-RSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 206 ~~k~~h~krRl~~-~~~l~~i~rvLkpGG~l~ 236 (311)
. ..+.... ..+-..+..+|.|||.++
T Consensus 105 ~-----~~~d~a~a~~lspli~~~la~gGi~v 131 (160)
T PF12692_consen 105 D-----KEKDDATAAWLSPLIAPVLAPGGIMV 131 (160)
T ss_dssp ------HHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred C-----cchhHHHHHhhhHHHHHHhcCCcEEE
Confidence 1 1111111 234446789999999875
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.55 Score=46.01 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=63.0
Q ss_pred CCeEEEEeccccHHHHHHHh--------h-------CCCCeEEEEchH-----H--HHHHHHHH------c----CCCcE
Q 021567 126 QPLVVDIGSGNGLFLLGMAR--------K-------RKDLNFLGLELV-----T--HCRDSLQL------S----GITNG 173 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~--------~-------~p~~~vvGiDi~-----~--~a~~~a~~------~----~~~Nv 173 (311)
.-.|+|+|||+|..++.+.. + .|+.++..-|+- . ..+...++ . .-.+-
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 35799999999987755421 1 356788888841 1 11111000 0 00122
Q ss_pred EEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCc------h-----hhh----------------hhhH---HHHHH
Q 021567 174 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP------E-----HRW----------------RMVQ---RSLVE 223 (311)
Q Consensus 174 ~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~------h-----~kr----------------Rl~~---~~~l~ 223 (311)
.|+.+=.-.+...+| ++++++.++..+.-.|..+. + .|. +-.+ ..||+
T Consensus 144 ~f~~gvpGSFY~RLf--P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~ 221 (386)
T PLN02668 144 YFAAGVPGSFYRRLF--PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR 221 (386)
T ss_pred eEEEecCcccccccc--CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455544444555566 58999999877654554320 0 000 0001 35666
Q ss_pred HHHhcccCCeEEEEEe
Q 021567 224 AVSDLLVHDGKVFLQS 239 (311)
Q Consensus 224 ~i~rvLkpGG~l~~~t 239 (311)
.=++-|+|||++++..
T Consensus 222 ~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 222 ARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHhccCcEEEEEE
Confidence 6678899999999974
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.46 Score=43.76 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=46.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|+|||||.--+++..-...|+..|+|+|+...+.+.+.. .+ .+......|...- + +..+.|+..+.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~~~~~v~Dl~~~-----~-~~~~~DlaLll 178 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VPHDARVRDLLSD-----P-PKEPADLALLL 178 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTS-----H-TTSEESEEEEE
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CCcceeEeeeecc-----C-CCCCcchhhHH
Confidence 578999999999999988888888999999986655444332 23 3566666676543 1 46778887765
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.78 Score=42.69 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=77.1
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~ 207 (311)
+++|+-||.|.+...+.+.. -..+.++|+.+.|.+..+.+- ++. .+++|+.++...-+ ...+|.++..+|-.-+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~-~~~-~~~~Di~~~~~~~~---~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANF-PNK-LIEGDITKIDEKDF---IPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhC-CCC-CccCccccCchhhc---CCCCCEEEeCCCChhh
Confidence 48999999999988887763 236889999998888776542 232 67788888732111 3569999988775543
Q ss_pred CCch-------hhhhhhHHHHHHHHHhcccCCeEEEEE-------eCcHHHHHHHHHHHHhcCCCc
Q 021567 208 NRPE-------HRWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 208 k~~h-------~krRl~~~~~l~~i~rvLkpGG~l~~~-------tD~~~~~~~~~~~l~~~g~~~ 259 (311)
.... .+..++ ..+++- .+.++|.=. ++. .+....+..+++.+++.|+..
T Consensus 76 S~ag~~~~~~d~r~~L~-~~~~~~-i~~~~P~~~-v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~ 138 (275)
T cd00315 76 SIAGKRKGFEDTRGTLF-FEIIRI-LKEKKPKYF-LLENVKGLLTHDNGNTLKVILNTLEELGYNV 138 (275)
T ss_pred hHHhhcCCCCCchHHHH-HHHHHH-HHhcCCCEE-EEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence 3211 111122 344433 334467633 332 233456778888899988754
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2 | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.15 Score=49.83 Aligned_cols=54 Identities=19% Similarity=0.408 Sum_probs=44.5
Q ss_pred hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHH
Q 021567 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKA 72 (311)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 72 (311)
++.+|.++|.|+|-||.-.--.++++.|..+|++.++.. ....+...|+++++.
T Consensus 305 ~~~~i~~aktv~wNGP~GvfE~~~F~~GT~~l~~aia~~--~a~sivGGGdt~~a~ 358 (384)
T PF00162_consen 305 FSEIIKKAKTVFWNGPMGVFEIENFAEGTRALAKAIAKS--GAFSIVGGGDTAAAI 358 (384)
T ss_dssp HHHHHHT-SEEEEES-SS-TTSGGGCHHHHHHHHHHHHH--TSEEEEESHHHHHHH
T ss_pred HHHHHhCCCeEEEECCcccCchhhhhHHHHHHHHHHHhc--CCeEEEcccHHHHHH
Confidence 678999999999999998777889999999999999998 677788888887755
|
7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A .... |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.39 Score=44.08 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=69.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH--HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ--LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~--~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+..||=+|.++|......+.. -|+..|+++|.+..+-+.+- ++.-+|+--+.-||..-..- ...-+-+|.|+..
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KY--RmlVgmVDvIFaD 233 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKY--RMLVGMVDVIFAD 233 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhe--eeeeeeEEEEecc
Confidence 4789999999999999988876 78899999998654322221 12237999999999864211 1113478888777
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+.|. .-|+ +.-....-||+||-|.++
T Consensus 234 vaqpd------q~Ri----vaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 234 VAQPD------QARI----VALNAQYFLKNGGHFVIS 260 (317)
T ss_pred CCCch------hhhh----hhhhhhhhhccCCeEEEE
Confidence 66553 1122 222455679999999885
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.43 Score=42.50 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEch--------HH-HHHHH-HHHcCCCcEEEEEccccchhhhhhccCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL--------VT-HCRDS-LQLSGITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi--------~~-~a~~~-a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
.+.+|+|+=.|.|.++.-++.. .|...|++.=- .+ ..+.. +++....|++.+-.+...+ . ++.
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~-----~-~pq 121 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVAL-----G-APQ 121 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccccc-----C-CCC
Confidence 4789999999999999999886 56667777641 11 11222 2233456777666665554 1 355
Q ss_pred cEeEEEEe--CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 194 KLILVSIQ--CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 194 s~D~V~i~--fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..|.+..+ +-|-+.+.-|. -.-..+..++++.|||||.+.+.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~---~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHP---ATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred cccccccchhhhhhhccccCc---chHHHHHHHHHHhcCCCcEEEEE
Confidence 66666432 22222222221 12257888999999999999884
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.63 Score=44.24 Aligned_cols=77 Identities=13% Similarity=0.015 Sum_probs=54.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhcc-CCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVAS-YPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i 200 (311)
++..+||-=.|.|.++..+.++.|+..++|+|....|++.+++.- .+++.+++++-.++...+-.. ....+|.|.+
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCCccCEEEE
Confidence 467999999999999999999999999999999999998876431 357999999988774322222 2357888865
Q ss_pred e
Q 021567 201 Q 201 (311)
Q Consensus 201 ~ 201 (311)
.
T Consensus 100 D 100 (310)
T PF01795_consen 100 D 100 (310)
T ss_dssp E
T ss_pred c
Confidence 4
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.11 Score=44.98 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-------CCCcEEEEEccccchhhhhhccCCCcEeE
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~ 197 (311)
+..|||+|-| ||-.++-+|...|+..|.-.|-.+++.+++++- +++.+..++-+.... +. ......||.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a-qs--q~eq~tFDi 106 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA-QS--QQEQHTFDI 106 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh-HH--HHhhCcccE
Confidence 4679999999 566677778889999999999766666655432 223333333222221 10 112458998
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH-HHHHHHHHHHHhcCC
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-EVMLRMKQQFLEYGK 257 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~-~~~~~~~~~l~~~g~ 257 (311)
|... |=-|-+.|| ..+++-|.+.|+|.|.-.+.+.-+ +-.+..++.....|+
T Consensus 107 IlaA--DClFfdE~h------~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf 159 (201)
T KOG3201|consen 107 ILAA--DCLFFDEHH------ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGF 159 (201)
T ss_pred EEec--cchhHHHHH------HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhcee
Confidence 8643 222222233 589999999999999876654221 122333444455554
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.22 Score=46.13 Aligned_cols=128 Identities=18% Similarity=0.158 Sum_probs=66.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH--------------------HHcC-----------C-Cc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL--------------------QLSG-----------I-TN 172 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a--------------------~~~~-----------~-~N 172 (311)
.+.++||||||+--+-.--|..+ -.+++..|.++..++.+ ...| + ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35689999999955532223222 23789999643222111 0011 0 11
Q ss_pred E-EEEEccccchhhhhhcc---CCCcEeEEEEeCCCC-CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe--------
Q 021567 173 G-YFIATNATSTFRSIVAS---YPGKLILVSIQCPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-------- 239 (311)
Q Consensus 173 v-~f~~~Da~~ll~~~~~~---~~~s~D~V~i~fpdP-~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-------- 239 (311)
| .++.+|+... + .++. -+..+|.|+..|.-- -.++ +-.....++.+.++|||||.|++..
T Consensus 135 Vk~Vv~cDV~~~-~-pl~~~~~~p~~~D~v~s~fcLE~a~~d-----~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~ 207 (256)
T PF01234_consen 135 VKQVVPCDVTQP-N-PLDPPVVLPPKFDCVISSFCLESACKD-----LDEYRRALRNISSLLKPGGHLILAGVLGSTYYM 207 (256)
T ss_dssp EEEEEE--TTSS-S-TTTTS-SS-SSEEEEEEESSHHHH-SS-----HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE
T ss_pred hceEEEeeccCC-C-CCCccccCccchhhhhhhHHHHHHcCC-----HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE
Confidence 3 3677888664 2 1211 123599988776310 0001 1233688999999999999999852
Q ss_pred ------CcHHH-HHHHHHHHHhcCCCce
Q 021567 240 ------DIEEV-MLRMKQQFLEYGKGKL 260 (311)
Q Consensus 240 ------D~~~~-~~~~~~~l~~~g~~~~ 260 (311)
....+ -+.+.+.+++.|+...
T Consensus 208 vG~~~F~~l~l~ee~v~~al~~aG~~i~ 235 (256)
T PF01234_consen 208 VGGHKFPCLPLNEEFVREALEEAGFDIE 235 (256)
T ss_dssp ETTEEEE---B-HHHHHHHHHHTTEEEE
T ss_pred ECCEecccccCCHHHHHHHHHHcCCEEE
Confidence 11112 3455677788887654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.7 Score=42.20 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=68.9
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CC---CCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhh-----ccC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RK---DLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIV-----ASY 191 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p---~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~-----~~~ 191 (311)
++.+|||.|...|.=+++|.+. ++ ...+++=|.... .+.........|+.....|+... +... +..
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~-p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLF-PNIYLKDGNDKE 233 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceec-cccccccCchhh
Confidence 4789999999999999888765 32 237899896432 22222222335666666666554 2211 112
Q ss_pred CCcEeEEEEeCC---CCCCCC------c-hhhhh-----hhHHHHHHHHHhcccCCeEEEEEe
Q 021567 192 PGKLILVSIQCP---NPDFNR------P-EHRWR-----MVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 192 ~~s~D~V~i~fp---dP~~k~------~-h~krR-----l~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...||.|.+.-| |-+.++ . ....| .++-.+|..-.+.||+||.++-+|
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 235888876543 211111 1 11112 234688999999999999999876
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.41 Score=39.41 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=49.8
Q ss_pred cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHH
Q 021567 172 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 251 (311)
Q Consensus 172 Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~ 251 (311)
++.+..+|+.+.++.+ +..+|.+++.=-.| .+.+ .+=+.++++.++++++|||.+.-.| -...+.+.
T Consensus 32 ~L~L~~gDa~~~l~~l----~~~~Da~ylDgFsP---~~nP--elWs~e~~~~l~~~~~~~~~l~Tys----~a~~Vr~~ 98 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL----DARFDAWYLDGFSP---AKNP--ELWSEELFKKLARLSKPGGTLATYS----SAGAVRRA 98 (124)
T ss_dssp EEEEEES-HHHHHHHB-----T-EEEEEE-SS-T---TTSG--GGSSHHHHHHHHHHEEEEEEEEES------BHHHHHH
T ss_pred EEEEEEcHHHHHHHhC----cccCCEEEecCCCC---cCCc--ccCCHHHHHHHHHHhCCCcEEEEee----chHHHHHH
Confidence 5788999999886542 47899998861111 1111 2344799999999999999987544 24467888
Q ss_pred HHhcCCCc
Q 021567 252 FLEYGKGK 259 (311)
Q Consensus 252 l~~~g~~~ 259 (311)
|.+.|+..
T Consensus 99 L~~aGF~v 106 (124)
T PF05430_consen 99 LQQAGFEV 106 (124)
T ss_dssp HHHCTEEE
T ss_pred HHHcCCEE
Confidence 99999864
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=91.20 E-value=8.7 Score=35.29 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=64.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||=+|=.-- .++++|-..+..+++-+|+.++.++ .+++.|++ ++.++.|+.+-++.- ..+.||.++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~---~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEE---LRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TT---TSS-BSEEEE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHH---HhcCCCEEEe
Confidence 4678999885443 3455555566789999998765443 34556775 999999988865432 2589999977
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCe-EEEEEeCcHH--HH--HHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEE--VM--LRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG-~l~~~tD~~~--~~--~~~~~~l~~~g~~~~~~ 262 (311)
. +|+ ....- .-|+.+....||.-| ..++..-+.+ .. ..+.+.+.+.|+....+
T Consensus 119 D--PPy--T~~G~-----~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 119 D--PPY--TPEGL-----KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp -----S--SHHHH-----HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEE
T ss_pred C--CCC--CHHHH-----HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHH
Confidence 6 333 22221 478888889998755 5555432222 33 34667777888754433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.63 Score=41.98 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=68.4
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc-cCCCcEeEEE----Ee
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVS----IQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~-~~~~s~D~V~----i~ 201 (311)
-++|||||=+....+.. .+-..++.||+... .. .+.+.|-.+. .+| .+++.||+|. ++
T Consensus 53 lrlLEVGals~~N~~s~---~~~fdvt~IDLns~------~~-----~I~qqDFm~r---plp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST---SGWFDVTRIDLNSQ------HP-----GILQQDFMER---PLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcccc---cCceeeEEeecCCC------CC-----CceeeccccC---CCCCCcccceeEEEEEEEEe
Confidence 58999999866655443 33456999998431 11 2345554443 122 1357888885 44
Q ss_pred C-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeE-----EEEEe-----CcHHHH--HHHHHHHHhcCCCceee
Q 021567 202 C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-----VFLQS-----DIEEVM--LRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~-----l~~~t-----D~~~~~--~~~~~~l~~~g~~~~~~ 262 (311)
| |+|- .| -+.+..+++.|+|+|. +++.+ ++..|. +...+.+...|+..+..
T Consensus 116 fVP~p~-------~R---G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 116 FVPDPK-------QR---GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred eCCCHH-------HH---HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 4 5552 22 3789999999999999 88864 233342 35567778888875533
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.97 Score=41.67 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=65.0
Q ss_pred CCeEEEEeccccHHHHHHHh---h--CCCCeEEEEch-------H-------------------HHHHHHHHHc----CC
Q 021567 126 QPLVVDIGSGNGLFLLGMAR---K--RKDLNFLGLEL-------V-------------------THCRDSLQLS----GI 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~---~--~p~~~vvGiDi-------~-------------------~~a~~~a~~~----~~ 170 (311)
...++|.||=.|..++.++. . .++.++++.|- . ....+.++++ ++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 46799999999987766543 2 35678999991 0 0133334332 32
Q ss_pred --CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH---H
Q 021567 171 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV---M 245 (311)
Q Consensus 171 --~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~---~ 245 (311)
+|++++.|...+.++. .+...+..+.+.+ |- .. -....|+.++..|.|||.++| |+... .
T Consensus 155 ~~~~v~~vkG~F~dTLp~---~p~~~IAll~lD~-Dl--Ye-------sT~~aLe~lyprl~~GGiIi~--DDY~~~gcr 219 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPD---APIERIALLHLDC-DL--YE-------STKDALEFLYPRLSPGGIIIF--DDYGHPGCR 219 (248)
T ss_dssp SSTTEEEEES-HHHHCCC----TT--EEEEEE----S--HH-------HHHHHHHHHGGGEEEEEEEEE--SSTTTHHHH
T ss_pred CcccEEEECCcchhhhcc---CCCccEEEEEEec-cc--hH-------HHHHHHHHHHhhcCCCeEEEE--eCCCChHHH
Confidence 5899999998776542 1345676666653 11 11 114789999999999999987 33222 2
Q ss_pred HHHHHHHHhcCCC
Q 021567 246 LRMKQQFLEYGKG 258 (311)
Q Consensus 246 ~~~~~~l~~~g~~ 258 (311)
+.+-+.+.++|..
T Consensus 220 ~AvdeF~~~~gi~ 232 (248)
T PF05711_consen 220 KAVDEFRAEHGIT 232 (248)
T ss_dssp HHHHHHHHHTT--
T ss_pred HHHHHHHHHcCCC
Confidence 2334445566653
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.4 Score=44.57 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=67.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC----CCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhh-ccCCCc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK----DLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIV-ASYPGK 194 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p----~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~-~~~~~s 194 (311)
...+|+|-.||+|.++...++... +..+.|.|+.......+ --+|+. ++...++|...- +..- ....+.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~-~~~~~~~~~~~ 264 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN-PKHDDKDDKGK 264 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC-CcccccCCccc
Confidence 345899999999999988876532 37799999754433333 234554 455666665443 1000 112366
Q ss_pred EeEEEEeCCCC---CCCCc----hhhhhh---------hH-HHHHHHHHhcccCCeEEEEEe
Q 021567 195 LILVSIQCPNP---DFNRP----EHRWRM---------VQ-RSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 195 ~D~V~i~fpdP---~~k~~----h~krRl---------~~-~~~l~~i~rvLkpGG~l~~~t 239 (311)
+|.|..|-|.- |-... ...++. -. -.|+..+...|+|||+..+..
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 99887773321 11110 000000 01 589999999999988766653
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.11 E-value=3.2 Score=38.28 Aligned_cols=105 Identities=19% Similarity=0.166 Sum_probs=60.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchH--HHHHHHH------HHcCC-CcEEEE---EccccchhhhhhccCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV--THCRDSL------QLSGI-TNGYFI---ATNATSTFRSIVASYPG 193 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~--~~a~~~a------~~~~~-~Nv~f~---~~Da~~ll~~~~~~~~~ 193 (311)
...+||+|.|+|-.++..|... ..+|+--|.. ...++.. +.++. .++... -+++.+. ... ..
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~----~~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFR----LP 160 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhc----cC
Confidence 4579999999997777777653 5788888842 1222111 11111 133332 2333332 111 22
Q ss_pred c-EeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 194 K-LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 194 s-~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
. +|+|... |.+....+. +.++.-++..|..+|.+++.+.-+.-
T Consensus 161 ~~~Dlilas--Dvvy~~~~~------e~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 161 NPFDLILAS--DVVYEEESF------EGLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred CcccEEEEe--eeeecCCcc------hhHHHHHHHHHhcCCeEEEEEecccc
Confidence 2 7888655 554433222 57888889999999988888765443
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.6 Score=40.61 Aligned_cols=124 Identities=19% Similarity=0.127 Sum_probs=77.9
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~ 207 (311)
+++|+-||-|.+.+.+.+.. -..+.++|+.+.|.+.-+.+-. ....+|+.++....++ . .+|+++..+|-.-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~---~~~~~Di~~~~~~~l~--~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP---EVICGDITEIDPSDLP--K-DVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT---EEEESHGGGCHHHHHH--H-T-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc---cccccccccccccccc--c-cceEEEeccCCceE
Confidence 58999999999999998874 2468999999888777654422 8889999988544443 2 59999999886655
Q ss_pred CCchhhh------hhhHHHHHHHHHhcccCCeEEEEE-------eCcHHHHHHHHHHHHhcCCCce
Q 021567 208 NRPEHRW------RMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 208 k~~h~kr------Rl~~~~~l~~i~rvLkpGG~l~~~-------tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
.....++ ..+-..+++-+ +.++|.-.+ +. .+....++.+++.|++.|+...
T Consensus 75 S~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~-~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~ 138 (335)
T PF00145_consen 75 SIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFL-LENVPGLLSSKNGEVFKEILEELEELGYNVQ 138 (335)
T ss_dssp STTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEE-EEEEGGGGTGGGHHHHHHHHHHHHHTTEEEE
T ss_pred eccccccccccccchhhHHHHHHH-hhccceEEE-ecccceeeccccccccccccccccccceeeh
Confidence 4322111 11113444433 446786544 33 2334567888999999987543
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=89.39 E-value=2.7 Score=38.99 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=59.2
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc-cccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~-Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..+|..|+| .|..++.+|+.. +.++++++.++...+.+++.+.+.+..... +....+ ... ....+|.++- +.
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~--~~~~~D~vid-~~ 240 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKK-AAG--LGGGFDVIFD-FV 240 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHH-HHh--cCCCceEEEE-CC
Confidence 5677778887 488888899876 577999998776666666566533221111 111111 111 3456887643 22
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...++++.+.|+++|.++..
T Consensus 241 g~-------------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 241 GT-------------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CC-------------HHHHHHHHHHhhcCCEEEEE
Confidence 11 25688889999999999864
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.63 Score=40.69 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=33.7
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 166 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~ 166 (311)
...+.+ ++.+|||-=||+|..+.+..+. +.+++|+|+.+...+.|+
T Consensus 185 I~~~t~-~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 185 IKASTN-PGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHS--TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred HHhhhc-cceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 344445 5899999999999999888877 578999999887766654
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.84 Score=45.30 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=35.9
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHHcCC-CcEEEEE
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIA 177 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~~~~-~Nv~f~~ 177 (311)
-.+||||+|||.++.-.++...+ .++++|. ..-|++...++|. +++.++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 47999999999999888877644 5999994 4455555555664 4566554
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=88.27 E-value=3.6 Score=39.54 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCeEEEEeccccHHHHHHHh--------h--------CCCCeEEEEch-----H------HHHHHHHHHcCCCcEEEEEc
Q 021567 126 QPLVVDIGSGNGLFLLGMAR--------K--------RKDLNFLGLEL-----V------THCRDSLQLSGITNGYFIAT 178 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~--------~--------~p~~~vvGiDi-----~------~~a~~~a~~~~~~Nv~f~~~ 178 (311)
.-+|+|+||.+|..++.+.. + -|..+++--|+ + ..-.+.... ..+ .|+.+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~--~~~-~f~~g 93 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK--FRN-YFVSG 93 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH--TTS-EEEEE
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC--Cce-EEEEe
Confidence 45899999999999877643 1 13457888884 1 111111212 223 33333
Q ss_pred cccchhhhhhccCCCcEeEEEEeCCCCCCCCc-----------------hhh---hhhhH-----------HHHHHHHHh
Q 021567 179 NATSTFRSIVASYPGKLILVSIQCPNPDFNRP-----------------EHR---WRMVQ-----------RSLVEAVSD 227 (311)
Q Consensus 179 Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~-----------------h~k---rRl~~-----------~~~l~~i~r 227 (311)
=.-.+...+| +++++|.++..+.-.|.... +.. ...+. ..||+.=++
T Consensus 94 vpgSFy~rLf--P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 94 VPGSFYGRLF--PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EES-TTS--S---TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhccC--CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333445566 59999999887644443310 000 00111 355666677
Q ss_pred cccCCeEEEEE
Q 021567 228 LLVHDGKVFLQ 238 (311)
Q Consensus 228 vLkpGG~l~~~ 238 (311)
-|+|||++++.
T Consensus 172 ELv~GG~mvl~ 182 (334)
T PF03492_consen 172 ELVPGGRMVLT 182 (334)
T ss_dssp HEEEEEEEEEE
T ss_pred eeccCcEEEEE
Confidence 89999999985
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.97 Score=42.19 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=35.5
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 166 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~ 166 (311)
...+.+ ++.+|||-=||+|..+++..+. +.+++|+|++++..+.+.
T Consensus 202 I~~~S~-~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~ 247 (284)
T PRK11524 202 ILASSN-PGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGL 247 (284)
T ss_pred HHHhCC-CCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHH
Confidence 344455 6899999999999999888777 679999998765444443
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=86.73 E-value=4.8 Score=38.17 Aligned_cols=75 Identities=13% Similarity=0.048 Sum_probs=56.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+....+|.=.|.|.++..+.++.|+. +++|+|....|++.+++.- .+++.+++++-.++....-....+.+|.|.
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL 101 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDGIL 101 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeEEE
Confidence 45899999999999999999998754 5999999888877776432 358999999877764322111245777774
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.58 E-value=1.6 Score=43.74 Aligned_cols=120 Identities=10% Similarity=0.109 Sum_probs=82.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-CC---CcEEEEEccccchhhhhhc--cCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GI---TNGYFIATNATSTFRSIVA--SYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~~---~Nv~f~~~Da~~ll~~~~~--~~~~s~D~V~ 199 (311)
...+|=||-|.|.+...+....|...+++||+...+++-+... +. ........|....+....- ..+..+|.+.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 5678899999999999999999999999999877777665432 11 1234455566655543321 1356788876
Q ss_pred Ee----------CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE--EeCcHHHHHHHHHHHHh
Q 021567 200 IQ----------CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL--QSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 200 i~----------fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~--~tD~~~~~~~~~~~l~~ 254 (311)
+. +|.|. .+.+.+|..+...|.|.|.+.+ .|-+..+...++..+.+
T Consensus 376 ~dvds~d~~g~~~pp~~---------fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~ 433 (482)
T KOG2352|consen 376 VDVDSKDSHGMQCPPPA---------FVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAK 433 (482)
T ss_pred EECCCCCcccCcCCchH---------HHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhh
Confidence 54 33332 3457889999999999999986 46666666666665544
|
|
| >PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.4 Score=45.90 Aligned_cols=96 Identities=23% Similarity=0.513 Sum_probs=63.8
Q ss_pred eeeccCCc-----hhhHhhhhceeEEEcccc-ccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchh
Q 021567 9 LSILGQGP-----WKRLLLQLQNVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIF 81 (311)
Q Consensus 9 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~ 81 (311)
..++--|| ++..+.++|.|+|-||.- |.+ +++..|...|++.++. .....+...|+++++.-. ++.+..+
T Consensus 291 ~~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~-~~F~~GT~~l~~aia~--~~~~svvGGGdt~aa~~~~g~~~~~s 367 (645)
T PRK13962 291 WMGLDIGPETIELFAKKIADAKTIVWNGPMGVFEF-DNFAEGTRAVAEAVAE--SGAITIIGGGDSAAAVEKLGFADKMS 367 (645)
T ss_pred CEEEeeCHHHHHHHHHHHhhCCEEEEECCCccccC-CCchHHHHHHHHHHHh--cCCeEEECchHHHHHHHHcCCccCce
Confidence 34555666 578899999999999996 665 4799999999999875 233444444455554432 3322211
Q ss_pred hhhhhhhhhhhhhhhhhccCCCchhhhh
Q 021567 82 GLNMVESGSAVWEFLKGRMLPGVSALDR 109 (311)
Q Consensus 82 ~~~~fe~~a~~wd~~~~r~~~~~~~l~~ 109 (311)
| ...+....-+++-|+..|+..++.+
T Consensus 368 -h-vSTGGGA~Le~LeGk~LPgv~aL~~ 393 (645)
T PRK13962 368 -H-ISTGGGASLEFLEGKVLPGIACLLD 393 (645)
T ss_pred -E-EcCChHHHHHHHcCCccHHHHHHhh
Confidence 1 2234567888889999999866653
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=86.33 E-value=3.9 Score=38.79 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=72.2
Q ss_pred EEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCC
Q 021567 129 VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN 208 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k 208 (311)
|+|+-||.|.+...+.+.. -..+.++|+.+.|.+..+.+- ++ .++.+|+.++....+ ..+|+++..+|-.-+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~-~~-~~~~~Di~~~~~~~~----~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANF-GN-KVPFGDITKISPSDI----PDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhC-CC-CCCccChhhhhhhhC----CCcCEEEecCCCcccc
Confidence 5899999999999987653 224567999888877765543 33 566789888732212 3589998887754443
Q ss_pred Cchh------hhhhhHHHHHHHHHhcccCCeEEEEE-------eCcHHHHHHHHHHHHhcCCCc
Q 021567 209 RPEH------RWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 209 ~~h~------krRl~~~~~l~~i~rvLkpGG~l~~~-------tD~~~~~~~~~~~l~~~g~~~ 259 (311)
.... .|..+-..+++. .+.++|. .+++. .+....+..++..|+..|+..
T Consensus 74 ~ag~~~~~~d~r~~L~~~~~r~-i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v 135 (315)
T TIGR00675 74 IAGKRKGFEDTRGTLFFEIVRI-LKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKV 135 (315)
T ss_pred hhcccCCCCCchhhHHHHHHHH-HhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEE
Confidence 2111 111111233332 2345775 33332 122245667788888888754
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=85.99 E-value=7.2 Score=40.42 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=63.1
Q ss_pred ccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 134 SGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 134 cGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
||-|.++..+++. ..+..++.+|..++..+.+++.| ...+.+|+.+. +.+-...-...|.+.+..+|+.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g---~~v~~GDat~~-~~L~~agi~~A~~vv~~~~d~~----- 476 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYG---YKVYYGDATQL-ELLRAAGAEKAEAIVITCNEPE----- 476 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCC---CeEEEeeCCCH-HHHHhcCCccCCEEEEEeCCHH-----
Confidence 6777787777764 33678999999888777776554 56889999875 2111112245677777766652
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
. ...+-...|.+.|...++..+.++..
T Consensus 477 -----~-n~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 477 -----D-TMKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred -----H-HHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 1 12344456678899999888766543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.80 E-value=4.4 Score=38.96 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=64.2
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHH-cCCCcEEEEEcc-ccchhhhhhccCCC-cEeEEEEe
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SGITNGYFIATN-ATSTFRSIVASYPG-KLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~-~~~~Nv~f~~~D-a~~ll~~~~~~~~~-s~D~V~i~ 201 (311)
..+++=+|||+ |.++..+|+......++.+|.++.-++.|++ .+.+-+.....+ ...... ....+ -+|.++--
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~---~~t~g~g~D~vie~ 245 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEIL---ELTGGRGADVVIEA 245 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHH---HHhCCCCCCEEEEC
Confidence 34899999997 6667888888888899999998888888776 333222222221 111111 11122 57877654
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
-.. +..++.+.+.++|||.+.+..
T Consensus 246 ~G~--------------~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 246 VGS--------------PPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred CCC--------------HHHHHHHHHHhcCCCEEEEEe
Confidence 222 367888999999999999853
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.3 Score=41.00 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=42.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-----CCCeEEEEch-HHH--HHHHHHHcCC-CcEEEEEccccchh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEL-VTH--CRDSLQLSGI-TNGYFIATNATSTF 184 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-----p~~~vvGiDi-~~~--a~~~a~~~~~-~Nv~f~~~Da~~ll 184 (311)
+...++|+|||.|.++..+++.. +...++.||. +.+ +=.+++.... ..+.=++.|+.++-
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 35689999999999999999886 5679999995 221 1122222211 35777888988873
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.69 E-value=0.93 Score=45.48 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHH----cCCC-cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQL----SGIT-NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~----~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
+..+|||.=|+||--+++.|+..|+. .+++-|.++++.+.+++ ++.+ -|.-.+.||..++-.. +.....||.|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~-~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH-PMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc-cccccccceE
Confidence 45789999999999999999998875 78888987777665443 3333 3677788888775221 2235789998
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcH
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIE 242 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~ 242 (311)
-+ ||.=. ...||+...+.++.||.+.+. ||-.
T Consensus 188 DL---DPyGs---------~s~FLDsAvqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 188 DL---DPYGS---------PSPFLDSAVQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred ec---CCCCC---------ccHHHHHHHHHhhcCCEEEEEecchH
Confidence 76 44311 138999999999999999985 5543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.41 E-value=3.3 Score=39.58 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=25.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV 158 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~ 158 (311)
....||==|||.|.++..||...+ ++-|=|.|
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfS 181 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF--KCQGNEFS 181 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc--cccccHHH
Confidence 357899999999999999999865 44566754
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=6.4 Score=37.19 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=56.0
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..||=+||| .|..++++|+..-...++++|.++..++.+++.|.+.+ +..+-.++ ..... ..+.+|.++-....
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~-~~~~~-~~g~~D~vid~~G~ 245 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL--VNPQNDDL-DHYKA-EKGYFDVSFEVSGH 245 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEE--ecCCcccH-HHHhc-cCCCCCEEEECCCC
Confidence 5667767875 34556667776533379999988877777777765432 11111111 11111 12347776533221
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+..++...+.|++||.+.+.
T Consensus 246 --------------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 246 --------------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred --------------HHHHHHHHHHhhcCCEEEEE
Confidence 25677788999999999875
|
|
| >COG4121 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.39 E-value=4.8 Score=37.20 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=76.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCCC------------CeEEEEch---HH----------------H-----------HHH
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKD------------LNFLGLEL---VT----------------H-----------CRD 163 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~------------~~vvGiDi---~~----------------~-----------a~~ 163 (311)
...|+|+|.|+|...+.+-+.+++ .+++.++. +. . ...
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 568999999999998777554332 34677772 10 0 011
Q ss_pred HHHHcCCCcEEEEEccccchhhhhhccCCC---cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 164 SLQLSGITNGYFIATNATSTFRSIVASYPG---KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 164 ~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~---s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
++...|..++.++.+|+...++. .+. .+|..+..--.|- |++ .+=+++++..+++..+|||.+. |.
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~----~~~~~~~~dAwflDgFsP~-kNP----~mW~~e~l~~~a~~~~~~~~l~--t~ 207 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPP----VPRRRPGTDAWFLDGFRPV-KNP----EMWEDELLNLMARIPYRDPTLA--TF 207 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCc----ccccccCccEEecCCcccc-CCh----hhccHHHHHHHHhhcCCCCcee--ch
Confidence 12123455788899999887543 223 6788876532221 111 1234699999999999999986 32
Q ss_pred cHHHHHHHHHHHHhcCCCc
Q 021567 241 IEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 241 ~~~~~~~~~~~l~~~g~~~ 259 (311)
. -+-...+-+++.|+..
T Consensus 208 s--sA~~vRr~L~~aGF~v 224 (252)
T COG4121 208 A--AAIAVRRRLEQAGFTV 224 (252)
T ss_pred H--HHHHHHHHHHHcCcee
Confidence 2 3446677888888764
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=82.91 E-value=6.5 Score=37.30 Aligned_cols=93 Identities=20% Similarity=0.168 Sum_probs=55.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||=+|+|. |.++.++|+.. +.++++++. +..-++.+++.|.+.+. .+-.+..+ .. ....+|.|+-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~---~~~~~~~~--~~-~~~~~d~vid 244 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATYVN---SSKTPVAE--VK-LVGEFDLIIE 244 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEec---CCccchhh--hh-hcCCCCEEEE
Confidence 356778788864 66677778775 568999986 45556666666654221 11111100 00 1234676654
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.... +..+.+..+.|++||.+.+.
T Consensus 245 ~~g~--------------~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGV--------------PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCC--------------HHHHHHHHHHccCCcEEEEE
Confidence 3221 25678888999999998864
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.78 E-value=0.58 Score=40.22 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=30.5
Q ss_pred ccCCCcEeEEEEeCCCCCCCCchhhhhhhH----HHHHHHHHhcccCCeEEEEEeCcH
Q 021567 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQ----RSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 189 ~~~~~s~D~V~i~fpdP~~k~~h~krRl~~----~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
++.++|+|+|+.- |-..++. ..++++++|.|||||.+.++..+.
T Consensus 42 ~F~dns~d~iyae----------HvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 42 MFEDNSVDAIYAE----------HVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cCCCcchHHHHHH----------HHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 3468999988643 1111111 478999999999999999975443
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.76 E-value=8.4 Score=34.02 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+..+|-.|+|+ |..+..+++.. +.++++++.++...+.++..+..++ +...-..............+|.++-...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 210 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHV--IDYKEEDLEEELRLTGGGGADVVIDAVG 210 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCcee--ccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence 467899999995 77788888775 4789999987665666655543321 1111111111100112456888865433
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.+ ..+..+.+.|+++|.+....
T Consensus 211 ~~--------------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 211 GP--------------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CH--------------HHHHHHHHhcccCCEEEEEc
Confidence 21 45667788899999998753
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.86 E-value=4.2 Score=37.32 Aligned_cols=191 Identities=16% Similarity=0.226 Sum_probs=96.5
Q ss_pred eeEEEcchhhHHHHHhhccchhhhhhhhhhhhhhhhhhhccCCCc---hhhhhhCCCchhhH-hhcCC--CCCCeEEEEe
Q 021567 60 CNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGV---SALDRAFPFDIDWS-AAYHD--PAQPLVVDIG 133 (311)
Q Consensus 60 ~~~~~~g~~~~~~~~~~~~s~~~~~~fe~~a~~wd~~~~r~~~~~---~~l~~~~~~~~~~~-~~f~~--~~~~~vLDIG 133 (311)
.++-|+...|.|+... ..-++|- .-.+||..-+++-|-. ..+.... .|+. +.-+. ..+-++||||
T Consensus 16 ~siDFanp~AVk~LnK-----AlL~~fY-~v~~wdiPeg~LCPpvPgRAdYih~l---aDLL~s~~g~~~~~~i~~LDIG 86 (292)
T COG3129 16 QSIDFANPLAVKALNK-----ALLAHFY-AVRYWDIPEGFLCPPVPGRADYIHHL---ADLLASTSGQIPGKNIRILDIG 86 (292)
T ss_pred eeeccCCHHHHHHHHH-----HHHHHhc-ceeEecCCCCCcCCCCCChhHHHHHH---HHHHHhcCCCCCcCceEEEeec
Confidence 3455666666666542 2233332 4567998888766543 2222211 1111 11111 1456899999
Q ss_pred ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----c-CCCc-EEEE-EccccchhhhhhccCCCcEeEEEEeCCCCC
Q 021567 134 SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----S-GITN-GYFI-ATNATSTFRSIVASYPGKLILVSIQCPNPD 206 (311)
Q Consensus 134 cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~-~~~N-v~f~-~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~ 206 (311)
.|.-++=--+--+.=+..++|.|++..++..|+. + ++.+ +++. +-|-..+++.+.. .++.+|....| .|
T Consensus 87 vGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig-~nE~yd~tlCN--PP- 162 (292)
T COG3129 87 VGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG-KNERYDATLCN--PP- 162 (292)
T ss_pred cCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc-ccceeeeEecC--CC-
Confidence 9988774444433226899999997776666543 2 3332 5554 3444444333221 25677877665 33
Q ss_pred CCCch--------hhhhhhHHHH-HHHHHhcccCCeE---EEEEeCcHHHHHHHHHHHHhcCCCceeee
Q 021567 207 FNRPE--------HRWRMVQRSL-VEAVSDLLVHDGK---VFLQSDIEEVMLRMKQQFLEYGKGKLVLV 263 (311)
Q Consensus 207 ~k~~h--------~krRl~~~~~-l~~i~rvLkpGG~---l~~~tD~~~~~~~~~~~l~~~g~~~~~~~ 263 (311)
|.... .|++-+..++ -......|+-||. +.....-..+...|.+.....+....+++
T Consensus 163 Fh~s~~da~~gsqrk~~nl~g~l~~~~~~~~lnfggq~qelwCegGe~afi~~mv~es~afakqv~Wft 231 (292)
T COG3129 163 FHDSAADARAGSQRKRRNLGGELGPTNKLDALNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFT 231 (292)
T ss_pred cchhHHHHHhcccCCcccccccccccccchhhhccCCceEEEecCcchhhHHHHHHHHHHHhhheehhe
Confidence 33211 1111110000 1233445565553 33434445666777777776665544443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.67 E-value=6.4 Score=33.31 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=62.3
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 212 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~ 212 (311)
|.|..+..+|++ ..+..+++.|.+....+.+.+.+ +. ...+..++.. ..|.|++..|++.
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g---~~-~~~s~~e~~~--------~~dvvi~~v~~~~------ 69 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG---AE-VADSPAEAAE--------QADVVILCVPDDD------ 69 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT---EE-EESSHHHHHH--------HBSEEEE-SSSHH------
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh---hh-hhhhhhhHhh--------cccceEeecccch------
Confidence 346777777765 23678999999887777776654 22 3344444422 3488888777652
Q ss_pred hhhhhHHHHHHH--HHhcccCCeEEEE-EeCcHHHHHHHHHHHHhcCCC
Q 021567 213 RWRMVQRSLVEA--VSDLLVHDGKVFL-QSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 213 krRl~~~~~l~~--i~rvLkpGG~l~~-~tD~~~~~~~~~~~l~~~g~~ 258 (311)
.-++.+.. +...|++|..++- .|-......++.+.+.+.|..
T Consensus 70 ----~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 70 ----AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR 114 (163)
T ss_dssp ----HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE
T ss_pred ----hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce
Confidence 11356666 7788888877764 344566677778888887754
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=80.97 E-value=16 Score=37.39 Aligned_cols=106 Identities=13% Similarity=0.048 Sum_probs=66.6
Q ss_pred ccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 134 SGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 134 cGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
||-|.++..+++. ..+..++.+|..++..+.+++. +...+++|+.+. +.+-...-...|.+.+..+|..
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~---g~~~i~GD~~~~-~~L~~a~i~~a~~viv~~~~~~----- 493 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER---GIRAVLGNAANE-EIMQLAHLDCARWLLLTIPNGY----- 493 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC---CCeEEEcCCCCH-HHHHhcCccccCEEEEEcCChH-----
Confidence 6777888888875 2356899999988777777653 577999999874 2111112246777777666542
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
. ...+-...|.+.|...++..+++.+ -.+.+++.|..
T Consensus 494 -----~-~~~iv~~~~~~~~~~~iiar~~~~~----~~~~l~~~Gad 530 (558)
T PRK10669 494 -----E-AGEIVASAREKRPDIEIIARAHYDD----EVAYITERGAN 530 (558)
T ss_pred -----H-HHHHHHHHHHHCCCCeEEEEECCHH----HHHHHHHcCCC
Confidence 0 1223334566678888888876643 22334556654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 311 | ||||
| 3ckk_A | 235 | Crystal Structure Of Human Methyltransferase-Like P | 5e-06 | ||
| 2fca_A | 213 | The Structure Of Bstrmb Length = 213 | 2e-05 | ||
| 3dxx_A | 218 | Crystal Structure Of Ectrmb Length = 218 | 5e-05 | ||
| 1yzh_A | 214 | Crystal Structure Of The Conserved Hypothetical Pro | 1e-04 |
| >pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein 1 Length = 235 | Back alignment and structure |
|
| >pdb|2FCA|A Chain A, The Structure Of Bstrmb Length = 213 | Back alignment and structure |
|
| >pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb Length = 218 | Back alignment and structure |
|
| >pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein, Methyltransferase From Streptococcus Pneumoniae Tigr4 Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 1e-24
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 19/211 (9%)
Query: 103 GVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR 162
D AQ DIG G G L+ ++ D LGLE+
Sbjct: 24 FAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVS 83
Query: 163 DSLQL----------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 212
D +Q G N + +NA + G+L + P+P F R +H
Sbjct: 84 DYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KGQLTKMFFLFPDPHFKRTKH 141
Query: 213 RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTN 272
+WR++ +L+ + +L G V+ +D+ E+ M F E+ + V ++D +
Sbjct: 142 KWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSE---- 197
Query: 273 QGGWLGENSFGVRSDWEQHVIDRGAPMYRLM 303
G ++ + V+ G + +
Sbjct: 198 ---DPVVGHLGTSTEEGKKVLRNGGKNFPAI 225
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Length = 246 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 2e-22
Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 112 PFDIDWSAAYHDPA---------QPLVVDIGSGNGLFLLGMARKRKDLNFLGLE------ 156
P D+DWS Y + + DIG G G ++ ++ + LG+E
Sbjct: 27 PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 86
Query: 157 ------LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 210
++ ++ G N + NA + G+L + P+P F +
Sbjct: 87 NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE--KGQLSKMFFCFPDPHFKQR 144
Query: 211 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256
+H+ R++ +L+ + +L G V+ +D++++ M + E+
Sbjct: 145 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Length = 218 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-17
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 13/149 (8%)
Query: 106 ALDRAFP-FDIDWSAAYHDPAQ------PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL- 157
AL+ +P +++S D P+ ++IG G G L+ MA+ R + +FLG+E+
Sbjct: 8 ALENYWPVMGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVH 67
Query: 158 ---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW 214
V C S G++N + +A ++ L +V + P+P ++
Sbjct: 68 SPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP--DNSLRMVQLFFPDPWHKARHNKR 125
Query: 215 RMVQRSLVEAVSDLLVHDGKVFLQSDIEE 243
R+VQ E V L G + +D E
Sbjct: 126 RIVQVPFAELVKSKLQLGGVFHMATDWEP 154
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-15
Identities = 25/141 (17%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 107 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCR 162
+ + W+ + + P+ +++G+G G F+ GMA++ D+N++G+EL +
Sbjct: 21 ISNPADYKGKWNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV 79
Query: 163 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 222
++ S N + +A T + PG++ V + +P + + R+ +
Sbjct: 80 QKVKDSEAQNVKLLNIDAD-TLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFL 136
Query: 223 EAVSDLLVHDGKVFLQSDIEE 243
+ +++ G + ++D
Sbjct: 137 KKYEEVMGKGGSIHFKTDNRG 157
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 8e-15
Identities = 23/141 (16%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 107 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCR 162
+ W + + P+ V++GSG G F+ GMA++ D+N++G+++ +++
Sbjct: 24 VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 82
Query: 163 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 222
D + G+ N + + + G++ + + +P + + R+ ++ +
Sbjct: 83 DKVLEVGVPNIKLLWVDGSDLTDYFE---DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFL 139
Query: 223 EAVSDLLVHDGKVFLQSDIEE 243
+ +L +G++ ++D
Sbjct: 140 DTFKRILPENGEIHFKTDNRG 160
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 1e-14
Identities = 17/171 (9%), Positives = 49/171 (28%), Gaps = 19/171 (11%)
Query: 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL--------VTHCRDSL 165
D ++ +V+D+G+G+G +AR+ + L+
Sbjct: 17 DAEFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP 75
Query: 166 QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 225
G+ N ++ A P + + P + ++ +
Sbjct: 76 AKGGLPNLLYLWATA--------ERLPPLSGVGELHVLMP-WGSLLRGVLGSSPEMLRGM 126
Query: 226 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW 276
+ + + ++ + + E+ + + + + GW
Sbjct: 127 AAVCRPGASFLVALNLHAWRPSV-PEVGEHPEPTPDSADEWLAPRYAEAGW 176
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 1e-08
Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 16/133 (12%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT--------HCRDSLQL 167
+ + + +D+G+G+G + +A ++ ++G++ V
Sbjct: 16 ELTEIIGQF-DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK 74
Query: 168 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 227
G++N F+ A S+ +SI P R ++ V+D
Sbjct: 75 GGLSNVVFVIAAA----ESLPFELKNIADSISILFPWGTL---LEYVIKPNRDILSNVAD 127
Query: 228 LLVHDGKVFLQSD 240
L + +
Sbjct: 128 LAKKEAHFEFVTT 140
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 18/143 (12%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITN---------GYF 175
++D+ SGNG+ L ++ R +G+E+ + S+ + + +
Sbjct: 53 IIDLCSGNGIIPLLLST-RTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111
Query: 176 IATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 234
+ + P S++ N F H + + LL GK
Sbjct: 112 TDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGK 171
Query: 235 VFL---QSDIEEVMLRMKQQFLE 254
+ +++ M++ LE
Sbjct: 172 ANFVHRPERLLDIIDIMRKYRLE 194
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 6e-04
Identities = 18/147 (12%), Positives = 39/147 (26%), Gaps = 23/147 (15%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITN------------ 172
+ D+G+G G + +A + + E R SL+L
Sbjct: 40 IADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99
Query: 173 GYFIATNATSTFRS----IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDL 228
+ V P + P+ + + S +
Sbjct: 100 TLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAI 159
Query: 229 LVHDGK---VFLQSDIEEVMLRMKQQF 252
+V G+ + + E++ +F
Sbjct: 160 MVSGGQLSLISRPQSVAEIIAACGSRF 186
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 100.0 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 100.0 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.97 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.97 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.95 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.69 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.67 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.62 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.61 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.6 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.58 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.56 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.56 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.56 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.56 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.55 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.55 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.54 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.54 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.54 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.53 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.53 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.52 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.51 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.51 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.51 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.49 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.49 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.49 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.48 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.48 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.48 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.48 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.47 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.47 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.47 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.47 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.47 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.46 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.46 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.46 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.46 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.46 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.46 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.45 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.45 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.45 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.45 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.44 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.44 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.44 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.44 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.44 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.44 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.44 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.43 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.43 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.43 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.43 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.43 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.42 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.42 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.42 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.42 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.42 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.42 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.42 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.41 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.41 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.41 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.41 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.41 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.41 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.41 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.4 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.4 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.4 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.39 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.39 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.39 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.39 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.39 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.39 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.39 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.39 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.39 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.39 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.38 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.38 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.38 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.38 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.38 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.38 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.38 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.37 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.37 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.37 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.37 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.37 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.36 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.36 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.36 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.36 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.36 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.36 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.36 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.35 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.35 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.35 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.35 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.35 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.35 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.34 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.34 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.34 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.34 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.34 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.34 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.33 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.33 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.33 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.33 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.33 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.32 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.32 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.32 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.32 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.32 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.32 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.32 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.31 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.31 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.31 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.31 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.31 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.31 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.31 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.31 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.3 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.3 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.3 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.29 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.29 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.28 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.28 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.28 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.27 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.27 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.26 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.26 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.26 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.26 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.26 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.25 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.25 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.24 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.24 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.24 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.24 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.24 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.24 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.23 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.23 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.23 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.23 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.23 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.22 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.22 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.21 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.21 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.21 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.2 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.2 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.2 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.19 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.19 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.19 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.19 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.19 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.18 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.18 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.18 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.17 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.17 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.17 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.17 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.16 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.16 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.16 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.16 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.15 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.14 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.14 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.14 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.14 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.14 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.14 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.13 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.13 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.13 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.12 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.12 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.12 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.12 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.12 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.11 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.11 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.1 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.1 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.08 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.08 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.08 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.07 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.07 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.07 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.06 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.06 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.06 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.06 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.06 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.05 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.05 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.04 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.03 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.03 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.01 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.01 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.01 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.0 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.0 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.99 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.99 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.98 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.98 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.98 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.98 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.97 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.97 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.97 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.94 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.93 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.92 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.91 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.88 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.87 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.86 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.85 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.85 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.79 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.77 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.76 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.73 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.71 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.68 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.65 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.62 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.6 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.58 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.55 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.54 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.53 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.52 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.51 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.49 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.48 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.44 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.43 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.42 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.41 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.4 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.36 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.32 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.3 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.3 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.27 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.24 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.23 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.17 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.16 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.16 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.15 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.13 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.08 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.0 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.94 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.89 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.8 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.8 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.6 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.48 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.44 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.39 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.35 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.35 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.92 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.91 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.77 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.68 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.58 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.44 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.43 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.34 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.32 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.31 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.13 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.93 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.77 | |
| 1vpe_A | 398 | Phosphoglycerate kinase; transferase, hyperthermos | 95.53 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.46 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.27 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.04 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.92 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.82 | |
| 3oz7_A | 417 | Phosphoglycerate kinase; transferase, ATP binding, | 94.78 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.66 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.65 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.63 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.6 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.44 | |
| 1php_A | 394 | 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac | 94.4 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.25 | |
| 16pk_A | 415 | PGK, 3-phosphoglycerate kinase; ternary complex, g | 94.17 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.1 | |
| 3q3v_A | 403 | Phosphoglycerate kinase; structural genomics, cent | 94.09 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 94.0 | |
| 1fw8_A | 416 | PGK P72, phosphoglycerate kinase; phosphotransfera | 93.98 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.97 | |
| 2wzb_A | 416 | Phosphoglycerate kinase 1; hereditary hemolytic an | 93.96 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.93 | |
| 1qpg_A | 415 | PGK, 3-phosphoglycerate kinase; phosphotransferase | 93.86 | |
| 1v6s_A | 390 | Phosphoglycerate kinase; riken structu genomics/pr | 93.77 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 93.43 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.04 | |
| 2cun_A | 410 | Phosphoglycerate kinase; structural genomics, tanp | 92.94 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.93 | |
| 1zmr_A | 387 | Phosphoglycerate kinase; transferase, glycolysis; | 92.89 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 92.77 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.74 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.36 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.18 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 92.15 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.07 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 91.97 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 91.95 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.93 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.9 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.86 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 91.8 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 91.68 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 91.68 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 91.61 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.58 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.37 | |
| 4fey_A | 395 | Phosphoglycerate kinase; structural genomics, niai | 90.63 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 90.62 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.45 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 90.4 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 90.36 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.29 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 89.72 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 89.72 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 89.66 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 89.4 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 89.38 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 89.04 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.57 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 88.15 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 88.04 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 87.89 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.82 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 87.6 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 87.12 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 86.97 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 86.76 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 86.34 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.22 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 86.05 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 85.71 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 85.35 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 85.24 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 84.89 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 83.56 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 83.33 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 83.23 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 82.7 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 82.61 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 82.21 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 82.12 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 81.81 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 81.67 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 80.82 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 80.42 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 80.28 |
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=243.45 Aligned_cols=202 Identities=21% Similarity=0.294 Sum_probs=162.9
Q ss_pred hhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHH
Q 021567 89 GSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDS 164 (311)
Q Consensus 89 ~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~ 164 (311)
+...|+.+..++.... -+..++|.+.|++ .+++|||||||+|.++..+|+.+|+.+|+|||++.. |.++
T Consensus 5 q~~~~~~~~~~~~~~~------~~~~~d~~~~f~~-~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~ 77 (218)
T 3dxy_A 5 QEHALENYWPVMGVEF------SEDMLDFPALFGR-EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLAS 77 (218)
T ss_dssp --CHHHHHHHHHBCCC------CSSCCCHHHHHSS-CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHhHHhCCCC------CCCCCCHHHHcCC-CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHH
Confidence 4455555554443221 1135689999987 689999999999999999999999999999998765 4445
Q ss_pred HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 165 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 165 a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
++..+++|+.++++|+.++++..+ +++++|.|+++||+||++.+|+++|++++.++++++++|||||.|++.||+..|
T Consensus 78 ~~~~~l~nv~~~~~Da~~~l~~~~--~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~ 155 (218)
T 3dxy_A 78 AHEEGLSNLRVMCHDAVEVLHKMI--PDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPY 155 (218)
T ss_dssp HHHTTCSSEEEECSCHHHHHHHHS--CTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred HHHhCCCcEEEEECCHHHHHHHHc--CCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence 556788999999999999765444 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 021567 245 MLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308 (311)
Q Consensus 245 ~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~ 308 (311)
++++.+.+...+.+. ++.. ..+|.......+.|+||+++.+.|+.||+++++|.+
T Consensus 156 ~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~t~fE~k~~~~G~~~~~~~~~~~~ 210 (218)
T 3dxy_A 156 AEHMLEVMSSIDGYK-NLSE--------SNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK 210 (218)
T ss_dssp HHHHHHHHHTSTTEE-ECCT--------TSSCBCCCTTSCCCTTCCTTCTTCCSCEEEEEEECC
T ss_pred HHHHHHHHHhCCCcc-cccC--------cCccCCCCCCCCCcHHHHHHHHCCCCeEEEEEEEcc
Confidence 999999998764322 2211 123434445578999999999999999999999975
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=239.75 Aligned_cols=182 Identities=19% Similarity=0.395 Sum_probs=156.3
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhc
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
..+|.+.|++ ++++|||||||+|.++..+|+.+|+.+++|+|++..+++. ++..+++|+.++++|+.++ ...+
T Consensus 28 ~~~~~~~f~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l-~~~~- 104 (213)
T 2fca_A 28 KGKWNTVFGN-DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL-TDVF- 104 (213)
T ss_dssp TTCHHHHHTS-CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH-HHHC-
T ss_pred CCCHHHHcCC-CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHH-Hhhc-
Confidence 4579888876 5789999999999999999999999999999987655544 4456788999999999985 3334
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeecccccc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT 269 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~ 269 (311)
+++++|.|+++||+||++.+|+++|++.+.++++++++|+|||.|++.||+..+++++.+.+.++|+.......|.+.
T Consensus 105 -~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~~~d~~~- 182 (213)
T 2fca_A 105 -EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDLHN- 182 (213)
T ss_dssp -CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGGG-
T ss_pred -CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccccccccccc-
Confidence 578899999999999999999999998999999999999999999999999999999999999998866555555321
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 021567 270 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308 (311)
Q Consensus 270 ~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~ 308 (311)
...+..++|+||+++.++|++||++.++|..
T Consensus 183 --------~~~~~~~~t~~E~~~~~~G~~i~~~~~~~~~ 213 (213)
T 2fca_A 183 --------SNLEGNIMTEYEEKFSALGQPIYRAEVEWRT 213 (213)
T ss_dssp --------SSCTTCCCCTTGGGSSSSSCCCEEEEEECCC
T ss_pred --------ccCCCCCCcHHHHHHHHCCCCeEEEEEEECC
Confidence 1345678899999999999999999999863
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=222.45 Aligned_cols=180 Identities=18% Similarity=0.377 Sum_probs=154.3
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhc
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
..+|.+.|++ .+++|||||||+|.++..+|+.+|+.+++|+|++..+++. +...+++|+.++++|+.++ ...+
T Consensus 31 ~~~~~~~f~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~- 107 (214)
T 1yzh_A 31 KAKWRDLFGN-DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL-TDYF- 107 (214)
T ss_dssp TTTHHHHHTS-CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG-GGTS-
T ss_pred ccCHHHHcCC-CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHH-Hhhc-
Confidence 4578888876 5789999999999999999999999999999987655544 4456778999999999885 3223
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeecccccc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT 269 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~ 269 (311)
+++++|.|++++|+||++.+|+++|+..+.+++++.++|+|||.+++.||+..+.+++.+.+.+.|+.......|.+.
T Consensus 108 -~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~- 185 (214)
T 1yzh_A 108 -EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLHA- 185 (214)
T ss_dssp -CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGGG-
T ss_pred -CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeeccccccc-
Confidence 478899999999999999999999999999999999999999999999999999999999999999877666655331
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEe
Q 021567 270 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306 (311)
Q Consensus 270 ~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k 306 (311)
...+..+.|+||+++.++|++||++.+++
T Consensus 186 --------~~~~~~~~t~~e~~~~~~g~~i~~~~~~~ 214 (214)
T 1yzh_A 186 --------SDFEGNVMTEYEQKFSNKGQVIYRVEAEF 214 (214)
T ss_dssp --------SCCCCCCCCHHHHHTGGGCCCCEEEEEEC
T ss_pred --------cCCCCCCCcHHHHHHHHCCCCeEEEEEEC
Confidence 23456789999999999999999999874
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=231.61 Aligned_cols=176 Identities=23% Similarity=0.359 Sum_probs=135.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----H------cCCCcEEEEEccccchhhhhhccCCCc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----L------SGITNGYFIATNATSTFRSIVASYPGK 194 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~------~~~~Nv~f~~~Da~~ll~~~~~~~~~s 194 (311)
.+++|||||||+|.++..||+.+|+.+++|||+++.+++.++ . .+..|+.++++|+.+.++..+ ++++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~--~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--YKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC--CTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC--CCcC
Confidence 467899999999999999999999999999998776655443 1 357899999999987544434 5889
Q ss_pred EeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCC
Q 021567 195 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQG 274 (311)
Q Consensus 195 ~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~ 274 (311)
+|.|+++|||||++.+|+++|++.+.++++++++|||||.|++.||+..|.+++.+.+.+++.+. ....+. +..
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~-~~~~~~-----~~~ 197 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFE-RVPLED-----LSE 197 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE-EECGGG-----GTT
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc-ccCchh-----ccc
Confidence 99999999999999999999999999999999999999999999999999999999999988532 232221 112
Q ss_pred CCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCCC
Q 021567 275 GWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC 309 (311)
Q Consensus 275 ~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~~ 309 (311)
.|. .+.....|+||+++.++|.++|+++|+|+..
T Consensus 198 ~~~-~~~~~~~t~~e~k~~~~G~~~~~~~f~r~~~ 231 (235)
T 3ckk_A 198 DPV-VGHLGTSTEEGKKVLRNGGKNFPAIFRRIQD 231 (235)
T ss_dssp CTT-GGGTTTSSHHHHHHHHTTCCCEEEEEEECCC
T ss_pred Ccc-ccCCCCCCHHHHHHHHCCCCeEEEEEEECCC
Confidence 232 2234568999999999999999999999864
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=215.90 Aligned_cols=187 Identities=17% Similarity=0.260 Sum_probs=144.6
Q ss_pred hhhHhhcCC---------CCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----Hc--------CCCcE
Q 021567 115 IDWSAAYHD---------PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LS--------GITNG 173 (311)
Q Consensus 115 ~~~~~~f~~---------~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~--------~~~Nv 173 (311)
.+|.+.|++ .++.+|||||||+|.+++.+|+..|+.+++|||+++.+++.++ .. +++|+
T Consensus 30 ~~w~~~f~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv 109 (246)
T 2vdv_E 30 MDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNI 109 (246)
T ss_dssp CCGGGTCGGGBC----CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTE
T ss_pred CCHHHHhCcccccccccCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcE
Confidence 478777765 2467999999999999999999999899999998766555443 33 67899
Q ss_pred EEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHH
Q 021567 174 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL 253 (311)
Q Consensus 174 ~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~ 253 (311)
.++++|+.+.++..+ .++++|.|+++|||||+|.+|+++|++++.+++++.++|+|||.|++.||+..|.+++.+.+.
T Consensus 110 ~~~~~D~~~~l~~~~--~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 187 (246)
T 2vdv_E 110 NVLRGNAMKFLPNFF--EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLE 187 (246)
T ss_dssp EEEECCTTSCGGGTS--CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEeccHHHHHHHhc--cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHH
Confidence 999999998545434 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCCCC
Q 021567 254 EYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV 310 (311)
Q Consensus 254 ~~g~~~~~~~~d~y~~~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~~~ 310 (311)
+.+.+ ..+..+.. ..+| ......+.|+||.++.++|.++|+++++|+.+.
T Consensus 188 ~~~~~-~~~~~~~~-----~~d~-~~~~~~~~t~~e~k~~~~g~~~~~~~~~k~~~~ 237 (246)
T 2vdv_E 188 EHPLF-ERLSKEWE-----ENDE-CVKIMRNATEEGKKVERKKGDKFVACFTRLPTP 237 (246)
T ss_dssp HSTTE-EECCHHHH-----HTCH-HHHHHHHSSHHHHHHHHTTCCCEEEEEEECCCC
T ss_pred hCcCe-EecCcccc-----ccCc-ccccCCCCCHHHHHHHHCCCCeEEEEEEECCCc
Confidence 88753 22221110 0000 001112469999999999999999999998764
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.6e-17 Score=146.65 Aligned_cols=134 Identities=14% Similarity=0.133 Sum_probs=98.1
Q ss_pred hhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhC--CCCeEEEEchHHHHHHHH
Q 021567 88 SGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSL 165 (311)
Q Consensus 88 ~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~--p~~~vvGiDi~~~a~~~a 165 (311)
+.+.+||.|-.|..|++..+.+. ...+.+.+.+ ++.+|||||||+|.++..+|++. |+.+|+|||+++.+++.|
T Consensus 37 ~va~~fdd~i~rsvP~Y~~~~~~---i~~l~~~~~~-~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A 112 (261)
T 4gek_A 37 RVAEVFPDMIQRSVPGYSNIISM---IGMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC 112 (261)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHH---HHHHHHHHCC-TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHH
T ss_pred chhhhhhhhHhhcCCCHHHHHHH---HHHHHHHhCC-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 35677777777777776444432 2345555655 57899999999999999999974 678999999887766666
Q ss_pred HH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 166 QL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 166 ~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++ .+. .|++|+++|+.++ + .+.+|.|++++.-.+.... ....+|++++++|||||.|++.
T Consensus 113 ~~~~~~~~~~~~v~~~~~D~~~~-----~--~~~~d~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 113 RRHIDAYKAPTPVDVIEGDIRDI-----A--IENASMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp HHHHHTSCCSSCEEEEESCTTTC-----C--CCSEEEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhhccCceEEEeecccccc-----c--ccccccceeeeeeeecCch------hHhHHHHHHHHHcCCCcEEEEE
Confidence 43 343 5899999999876 3 3468999888653332111 1247899999999999999985
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.4e-17 Score=143.40 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=87.6
Q ss_pred hhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH-HHHH-------HHHHHcCCCcEEEEEccccchhhhh
Q 021567 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV-THCR-------DSLQLSGITNGYFIATNATSTFRSI 187 (311)
Q Consensus 116 ~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~-~~a~-------~~a~~~~~~Nv~f~~~Da~~ll~~~ 187 (311)
.|.+.+.. ++.+|||||||+|.++..+|++.|+.+|+|||++ +.++ +++++.+++|+.|+++|+.++ +..
T Consensus 16 ~~~~~~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~ 93 (225)
T 3p2e_A 16 ELTEIIGQ-FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFE 93 (225)
T ss_dssp HHHHHHTT-CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGG
T ss_pred HHHHHhCC-CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhh
Confidence 34455554 4679999999999999999998899999999998 3333 333345778999999999987 321
Q ss_pred hccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 188 VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 188 ~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+ .+.+|.++++||.|. .+...+...+.++++++|+|||||.+++
T Consensus 94 ~---~d~v~~i~~~~~~~~---~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 94 L---KNIADSISILFPWGT---LLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp G---TTCEEEEEEESCCHH---HHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred c---cCeEEEEEEeCCCcH---HhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 2 378999999987653 2333344446899999999999999999
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-16 Score=142.19 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=87.4
Q ss_pred hhhhhhhhhhhhhhhhccCCCc-hhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH
Q 021567 83 LNMVESGSAVWEFLKGRMLPGV-SALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 161 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~-~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a 161 (311)
.+.|++.+..|+..+ |.+ .++ .+|...... ...+|||||||+|.++..|+++. .+|+|+|+++.+
T Consensus 8 ~d~F~~~a~~Y~~~R----p~yp~~l-------~~~l~~~~~-~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~m 73 (257)
T 4hg2_A 8 KDHFTPVADAYRAFR----PRYPRAL-------FRWLGEVAP-ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQ 73 (257)
T ss_dssp ------------CCC----CCCCHHH-------HHHHHHHSS-CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHH
T ss_pred HHHHHHHHHHHHHHC----CCcHHHH-------HHHHHHhcC-CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHh
Confidence 456877888887643 332 111 233333332 45789999999999999999884 589999999988
Q ss_pred HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 162 RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 162 ~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.+++ ..|+.++++|++++ +.++++||.|++...-.|+. .++++++++|+|||||.|.+.+
T Consensus 74 l~~a~~--~~~v~~~~~~~e~~-----~~~~~sfD~v~~~~~~h~~~---------~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 74 IRQALR--HPRVTYAVAPAEDT-----GLPPASVDVAIAAQAMHWFD---------LDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp HHTCCC--CTTEEEEECCTTCC-----CCCSSCEEEEEECSCCTTCC---------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhh--cCCceeehhhhhhh-----cccCCcccEEEEeeehhHhh---------HHHHHHHHHHHcCCCCEEEEEE
Confidence 877643 46899999999987 55799999999876655542 1479999999999999998864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=134.79 Aligned_cols=156 Identities=12% Similarity=-0.010 Sum_probs=115.1
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHH----c-CCCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQL----S-GITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~----~-~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||+|||+|.++..+++. .|..+++|+|+++.+++.+++ . +.+|+.++++|+.+. + ++++||.|
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~----~--~~~~fD~V 183 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF----I--SDQMYDAV 183 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC----C--CSCCEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc----C--cCCCccEE
Confidence 4679999999999999999998 788999999987766655543 3 667999999998763 2 36789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCC
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG 278 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~ 278 (311)
+++.|+|+ .+++++.++|+|||.+++.+......+.+.+.+.+.|+........ + ...|..
T Consensus 184 i~~~~~~~-------------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-~-----~~~~~~ 244 (275)
T 1yb2_A 184 IADIPDPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVEL-M-----KRRILV 244 (275)
T ss_dssp EECCSCGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEE-E-----ECCCCC
T ss_pred EEcCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEEE-e-----cceeEe
Confidence 99877764 7899999999999999999888767777888888888765444321 1 122321
Q ss_pred CCCCCCCCHHHHHHHHcCCCeEEEEEEeCCCC
Q 021567 279 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV 310 (311)
Q Consensus 279 ~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~~~ 310 (311)
.. ....... ...|.+.|.+..+|..+.
T Consensus 245 ~~-~~~rp~~----~~~~~~~~li~ark~~~~ 271 (275)
T 1yb2_A 245 RE-GATRPAS----DDLTHTAFITFAIKKSGM 271 (275)
T ss_dssp CT-TCCCCGG----GGSCEEEEEEEEEECCSC
T ss_pred cC-Ccccccc----ccCCCcEEEEEEEehhcc
Confidence 11 1111111 255788888888887653
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=129.13 Aligned_cols=200 Identities=11% Similarity=0.089 Sum_probs=127.1
Q ss_pred hhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH
Q 021567 82 GLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 161 (311)
Q Consensus 82 ~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a 161 (311)
+.+.|+..+..|+....+..+....+... ...+... ..++.+|||||||+|.++..+++..|+.+++|+|+++.+
T Consensus 6 ~~~~f~~~a~~y~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~ 80 (234)
T 3dtn_A 6 IKRKFDAVSGKYDEQRRKFIPCFDDFYGV---SVSIASV--DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKM 80 (234)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTHHHHHHH---HHHTCCC--SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHH
T ss_pred HHHHHHHHHHHHHHhHHHhCcCHHHHHHH---HHHHhhc--CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHH
Confidence 34467778889999888877776322211 1111111 124689999999999999999999999999999999888
Q ss_pred HHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 162 RDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 162 ~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.+++. ...|+.++++|+.++ +. ++++|.|++..+-.+... .....++++++++|||||.+++.+
T Consensus 81 ~~~a~~~~~~~~~~~~~~~d~~~~-----~~-~~~fD~v~~~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 81 LEIAKNRFRGNLKVKYIEADYSKY-----DF-EEKYDMVVSALSIHHLED------EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp HHHHHHHTCSCTTEEEEESCTTTC-----CC-CSCEEEEEEESCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhhccCCCEEEEeCchhcc-----CC-CCCceEEEEeCccccCCH------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8877654 223899999999876 32 389999998864333211 111369999999999999999865
Q ss_pred Cc----HHHH----HHHHHHHHhcCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEe
Q 021567 240 DI----EEVM----LRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306 (311)
Q Consensus 240 D~----~~~~----~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k 306 (311)
.. .... ......+...++....... .+ ... .........+++..+.+.|...-.+.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~---~~~~~~~~~~~~~ll~~aGF~~v~~~~~~ 215 (234)
T 3dtn_A 149 LVHGETAFIENLNKTIWRQYVENSGLTEEEIAA-GY----ERS---KLDKDIEMNQQLNWLKEAGFRDVSCIYKY 215 (234)
T ss_dssp ECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHT-TC-----------CCCCCBHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHH-HH----Hhc---ccccccCHHHHHHHHHHcCCCceeeeeee
Confidence 11 1111 1112223333432211100 00 000 01111224567788999999988877664
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=125.67 Aligned_cols=122 Identities=14% Similarity=0.085 Sum_probs=93.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
+.+|||||||+|.++..+++. +.+++|+|+++.+++.++++ ..++.++++|+.++ +.++++||.|++...-.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~l~ 113 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQT-HPSVTFHHGTITDL-----SDSPKRWAGLLAWYSLI 113 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHH-CTTSEEECCCGGGG-----GGSCCCEEEEEEESSST
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHh-CCCCeEEeCccccc-----ccCCCCeEEEEehhhHh
Confidence 568999999999999999998 56999999999988888765 45899999999886 33578999999876544
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH---------------HHHHHHHHHHhcCCCcee
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------------VMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~---------------~~~~~~~~l~~~g~~~~~ 261 (311)
+.... ....++++++++|+|||.+++.+-... -.+++.+.+++.|+....
T Consensus 114 ~~~~~------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 178 (203)
T 3h2b_A 114 HMGPG------ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTS 178 (203)
T ss_dssp TCCTT------THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEE
T ss_pred cCCHH------HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEE
Confidence 32211 115899999999999999998752211 134566666777765443
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=119.68 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=95.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+++.+|..+++|+|+++.+++.++ ..+.+ |+ ++++|+.+.+ +..++++|.|+
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~----~~~~~~~D~i~ 99 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF----DDVPDNPDVIF 99 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG----GGCCSCCSEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh----hccCCCCCEEE
Confidence 457999999999999999999999999999998766555554 44666 89 8899986542 32348899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
+.++..+ ..+++++.++|+|||.+++.+...+......+.+.+.+.....
T Consensus 100 ~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 100 IGGGLTA------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp ECC-TTC------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEE
T ss_pred ECCcccH------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEE
Confidence 8866443 3789999999999999999887777777888888888865443
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=126.31 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=91.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HH----HcCCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQ----LSGITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
++.+|||||||+|.++..+++++|+.+++|+|+++.+++. ++ ..+.+|+.++++|+.++ ++.+++ |
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l-----~~~~~~-d 100 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL-----PPLSGV-G 100 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC-----CSCCCE-E
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC-----CCCCCC-C
Confidence 4678999999999999999999999999999987664443 32 34567999999999986 445667 8
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC-----------------cHHH-HHHHHHHHHhcCCC
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-----------------IEEV-MLRMKQQFLEYGKG 258 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD-----------------~~~~-~~~~~~~l~~~g~~ 258 (311)
.+++.++.. .. +.+.---...++++++++|||||.+++... ...+ .+.+.+.+.+.|+.
T Consensus 101 ~v~~~~~~~--~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 177 (218)
T 3mq2_A 101 ELHVLMPWG--SL-LRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWK 177 (218)
T ss_dssp EEEEESCCH--HH-HHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEE
T ss_pred EEEEEccch--hh-hhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCC
Confidence 888776522 11 000000015899999999999999999642 1223 23366677888886
Q ss_pred ceee
Q 021567 259 KLVL 262 (311)
Q Consensus 259 ~~~~ 262 (311)
...+
T Consensus 178 i~~~ 181 (218)
T 3mq2_A 178 LADC 181 (218)
T ss_dssp EEEE
T ss_pred ceee
Confidence 5543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=127.93 Aligned_cols=120 Identities=14% Similarity=0.001 Sum_probs=99.1
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHH----c-CCCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQL----S-GITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~----~-~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||+|||+|.++..+++. .|..+++|+|+++.+++.+++ . +.+|+.+.++|+.+. +.+++++|.|
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-----~~~~~~~D~v 170 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-----ELEEAAYDGV 170 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-----CCCTTCEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-----CCCCCCcCEE
Confidence 4679999999999999999998 778899999987666555543 3 667899999998875 2346789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+++.|+|+ .+++++.++|+|||.+++.+........+.+.+.+.|+.....
T Consensus 171 ~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~ 221 (258)
T 2pwy_A 171 ALDLMEPW-------------KVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERV 221 (258)
T ss_dssp EEESSCGG-------------GGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEE
T ss_pred EECCcCHH-------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEE
Confidence 99988775 7899999999999999999888777778888888888764433
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-14 Score=120.86 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=96.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+|+..|..+++|+|+++.+++.+ +..+.+|+.++++|+.+.+. ....+|.|++
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~D~i~~ 114 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-----DLPDPDRVFI 114 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-----TSCCCSEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-----cCCCCCEEEE
Confidence 46799999999999999999999999999999876555544 44577899999999976522 2367999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 257 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~ 257 (311)
..+.+ ....+++++.++|+|||.+++.+......+.+.+.+.+.|+
T Consensus 115 ~~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 115 GGSGG-----------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp SCCTT-----------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred CCCCc-----------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 75433 11489999999999999999988777778888889999997
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=127.29 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=110.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++.+|||||||+|.++..+++. +.+++|+|+++.+++.+++.. ..++.++++|+.++ +.++++||.|++...
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~ 125 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSL-----PFENEQFEAIMAINS 125 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBC-----SSCTTCEEEEEEESC
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcC-----CCCCCCccEEEEcCh
Confidence 4679999999999999999998 579999999999988887653 46899999999886 446889999998765
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH---------------------HHHHHHHHHHHhcCCCceee
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---------------------EVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~---------------------~~~~~~~~~l~~~g~~~~~~ 262 (311)
-.+.... ..++++++++|+|||.+++.+... ....++.+.+++.|+.....
T Consensus 126 l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 126 LEWTEEP--------LRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp TTSSSCH--------HHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred HhhccCH--------HHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 4433211 488999999999999999975211 01235667778888875544
Q ss_pred eccccccccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCCC
Q 021567 263 VQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC 309 (311)
Q Consensus 263 ~~d~y~~~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~~ 309 (311)
.. .|. ...+..................|.+.++|.+.
T Consensus 198 ~~-~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (242)
T 3l8d_A 198 IG-VYK---------RGVNEKMLGQLSTDLQQSLTFLWVFMLKRHKE 234 (242)
T ss_dssp EE-EEC---------TTCCHHHHTTSCHHHHHHTEEEEEEEEEECC-
T ss_pred ec-ccc---------cCccHHHHHHHHHhHHHHHhHhhhhhhHHHHH
Confidence 31 121 11111111122233344556677777777654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-14 Score=127.50 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=98.9
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHH----HHcCCCc-EEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSL----QLSGITN-GYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a----~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||+|||+|.++..+++. .|..+++|+|+++.+++.+ +..+++| +.++++|+.+. + +++++|.|
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~D~v 166 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG----I--EEENVDHV 166 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC----C--CCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc----c--CCCCcCEE
Confidence 4679999999999999999999 8899999999876554444 4457766 99999999854 2 46789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC--CCceee
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG--KGKLVL 262 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g--~~~~~~ 262 (311)
+++.|+|+ .+++++.++|+|||.+++.+........+.+.+.+.| +.....
T Consensus 167 ~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 167 ILDLPQPE-------------RVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp EECSSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEE
T ss_pred EECCCCHH-------------HHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEE
Confidence 99888775 7899999999999999998877777888888999988 654433
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=126.00 Aligned_cols=188 Identities=10% Similarity=0.011 Sum_probs=106.8
Q ss_pred hhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH
Q 021567 84 NMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD 163 (311)
Q Consensus 84 ~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~ 163 (311)
+.|+..+..|+..........+.....+ ....+.....++.+|||||||+|.++..++++ +.+++|+|+++.+++
T Consensus 7 ~~f~~~a~~y~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~ 81 (220)
T 3hnr_A 7 GLFDEWAHTYDSFVQGEDIQYKEVFAHY---EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRM 81 (220)
T ss_dssp -----------------CCTTTTTTTTH---HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHH---HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHH
Confidence 4566677777776543333221111000 01111111114679999999999999999988 679999999998888
Q ss_pred HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe---C
Q 021567 164 SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---D 240 (311)
Q Consensus 164 ~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t---D 240 (311)
.+++.-..|+.++++|+.++ +.. ++||.|++...-.+.... ....++++++++|||||.+++.+ +
T Consensus 82 ~a~~~~~~~~~~~~~d~~~~-----~~~-~~fD~v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 82 IAKEKLPKEFSITEGDFLSF-----EVP-TSIDTIVSTYAFHHLTDD------EKNVAIAKYSQLLNKGGKIVFADTIFA 149 (220)
T ss_dssp HHHHHSCTTCCEESCCSSSC-----CCC-SCCSEEEEESCGGGSCHH------HHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred HHHHhCCCceEEEeCChhhc-----CCC-CCeEEEEECcchhcCChH------HHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 88655335899999999886 334 899999988543332111 11358999999999999999973 3
Q ss_pred cHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEE
Q 021567 241 IEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYR 301 (311)
Q Consensus 241 ~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~ 301 (311)
...........+...++..... + . ....+....+++..+.+.|..+-.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~--~-~----------~~~~~~~~~~~~~~l~~aGf~v~~ 197 (220)
T 3hnr_A 150 DQDAYDKTVEAAKQRGFHQLAN--D-L----------QTEYYTRIPVMQTIFENNGFHVTF 197 (220)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHH--H-H----------HHSCCCBHHHHHHHHHHTTEEEEE
T ss_pred ChHHHHHHHHHHHhCCCccchh--h-c----------chhhcCCHHHHHHHHHHCCCEEEE
Confidence 3444445555555555432110 0 0 001112245677888888876543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-14 Score=127.55 Aligned_cols=154 Identities=10% Similarity=0.065 Sum_probs=113.2
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||+|||+|.++..+++. .|..+++|+|+++.+++.++ ..++ +|+.++.+|+.+. + +++++|.|
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~D~V 185 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG----F--DEKDVDAL 185 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC----C--SCCSEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc----c--cCCccCEE
Confidence 4579999999999999999998 77899999998766655554 3465 6899999998765 2 35789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCC
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG 278 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~ 278 (311)
+++.|+|| .+++++.++|+|||.+++.+........+.+.+.+.|+.......+.. ..|..
T Consensus 186 ~~~~~~~~-------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~------~~~~~ 246 (277)
T 1o54_A 186 FLDVPDPW-------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLF------RPYKP 246 (277)
T ss_dssp EECCSCGG-------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCCC------CCEEC
T ss_pred EECCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEEEee------eeeEe
Confidence 99888775 789999999999999999988776777888888888876554433211 11211
Q ss_pred CCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 021567 279 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308 (311)
Q Consensus 279 ~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~ 308 (311)
. + ..++.+ ....|.+.|.+..+|..
T Consensus 247 ~-~--~~~rp~--~~~~~~~~~li~ark~~ 271 (277)
T 1o54_A 247 V-P--ERLRPV--DRMVAHTAYMIFATKVC 271 (277)
T ss_dssp C-T--TSCEEC--SCCCCCSCEEEEEEECS
T ss_pred c-c--ceeCCC--ccccCCCeEEEEEEecC
Confidence 1 1 111111 12457788888888854
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=128.31 Aligned_cols=131 Identities=10% Similarity=-0.085 Sum_probs=95.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---CCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+.+|||||||+|.++..+++..| .+++|||+++.+++.+++. ...++.++.+|+.++.. +.++++||.|++
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~FD~i~~- 134 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP---TLPDGHFDGILY- 134 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG---GSCTTCEEEEEE-
T ss_pred CCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcc---cccccCCceEEE-
Confidence 578999999999999999998876 4899999988777776542 23579999999988743 336889999965
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe------------C--cHHHHHHHHHHHHhcCCCceee
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS------------D--IEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t------------D--~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
|++....+..+....+.++++++|+|||||+|.+.. + ...+.+.....|.+.|+....+
T Consensus 135 --D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i 207 (236)
T 3orh_A 135 --DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENI 207 (236)
T ss_dssp --CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGGE
T ss_pred --eeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEEE
Confidence 455444433333344789999999999999998742 1 0123444556777888875544
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=123.71 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=83.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++.+|||||||+|.++..+++..+. +++|+|+++.+++.+++.. ..++.++++|+.++ +.++++||.|++...
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~ 117 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDI-----AIEPDAYNVVLSSLA 117 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGC-----CCCTTCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhC-----CCCCCCeEEEEEchh
Confidence 4679999999999999999998643 9999999998888886543 46899999999876 446789999998754
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
-.+..+ ...++++++++|||||.+++.+.+
T Consensus 118 l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 118 LHYIAS--------FDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp GGGCSC--------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhhh--------HHHHHHHHHHHcCCCcEEEEEeCC
Confidence 332211 158999999999999999997533
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=127.06 Aligned_cols=102 Identities=10% Similarity=0.035 Sum_probs=77.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-C---------------CCcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-G---------------ITNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~---------------~~Nv~f~~~Da~~ll~~~~ 188 (311)
.+.+|||+|||+|..+..||++ +.+|+|+|+|+.+++.++++ + ..|++|+++|+.++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l----- 94 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL----- 94 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS-----
T ss_pred CCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC-----
Confidence 4679999999999999999998 57999999999888888653 2 35899999999887
Q ss_pred ccCC-CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 189 ASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 189 ~~~~-~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+..+ ++||.|+....-.+... -....++++++++|||||++++.+
T Consensus 95 ~~~~~~~fD~v~~~~~l~~l~~------~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 95 TARDIGHCAAFYDRAAMIALPA------DMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp THHHHHSEEEEEEESCGGGSCH------HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CcccCCCEEEEEECcchhhCCH------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2233 78999987543221110 112478999999999999855443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=125.80 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=96.5
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH----Hc-C--CCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ----LS-G--ITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~----~~-~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
++.+|||+|||+|.++..+++. .|..+++|+|+++.+++.++ .. + .+|+.++++|+.+. +.+++++|
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-----~~~~~~~D 173 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-----ELPDGSVD 173 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-----CCCTTCEE
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-----CCCCCcee
Confidence 4679999999999999999986 57889999998766555554 33 5 57899999999876 23467899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh-cCCCce
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE-YGKGKL 260 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~-~g~~~~ 260 (311)
.|+++.|+|| .+++++.++|+|||.+++.+........+.+.+.+ .++...
T Consensus 174 ~v~~~~~~~~-------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~ 225 (280)
T 1i9g_A 174 RAVLDMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEP 225 (280)
T ss_dssp EEEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCC
T ss_pred EEEECCcCHH-------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCc
Confidence 9999988886 78999999999999999998887777777877777 555433
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-13 Score=121.71 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=98.4
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++.+|||||||+|.++..+|+. .|+.+|+|+|+++.+++.+.+. ...|+..+.+|+...... +..++++|.|+..
T Consensus 77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~--~~~~~~vDvVf~d 154 (233)
T 4df3_A 77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKY--RHLVEGVDGLYAD 154 (233)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGG--TTTCCCEEEEEEC
T ss_pred CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcccc--ccccceEEEEEEe
Confidence 5789999999999999999998 6899999999998888777543 357999999999875322 3357899999887
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe---------CcHHHHHHHHHHHHhcCCCcee
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t---------D~~~~~~~~~~~l~~~g~~~~~ 261 (311)
++.|+ ....++.++++.|||||.+++.. .....+....+.+++.|+....
T Consensus 155 ~~~~~----------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e 213 (233)
T 4df3_A 155 VAQPE----------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKD 213 (233)
T ss_dssp CCCTT----------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCh----------hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 77664 12478999999999999999852 2233455667788899987653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=122.37 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=90.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||||||+|.+++.+|...|+.+++|+|+++.+++.+ +..+++|++++++|+.++... +..+++||.|++
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD~V~~ 147 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR--KDVRESYDIVTA 147 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC--TTTTTCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc--ccccCCccEEEE
Confidence 35789999999999999999988899999999876555444 446778999999999876210 012578999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc--HHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--EEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~--~~~~~~~~~~l~~~g~~~~ 260 (311)
..... ...+++++.++|+|||.+++.... ..-...+.+.+++.|+...
T Consensus 148 ~~~~~------------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~ 197 (240)
T 1xdz_A 148 RAVAR------------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE 197 (240)
T ss_dssp ECCSC------------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred eccCC------------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEe
Confidence 74321 158999999999999999986432 2223455667777876543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=120.51 Aligned_cols=124 Identities=9% Similarity=0.076 Sum_probs=94.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+++.. |..+++|+|+++.+++.+ ...+++|+.++++|+.++ +.+++++|.|+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~ 111 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI-----PLPDNTVDFIF 111 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC-----SSCSSCEEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC-----CCCCCCeeEEE
Confidence 46799999999999999999985 788999999876555444 445777999999999876 34678999999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-----------H-HHHHHHHHHHHhcCCCcee
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----------E-EVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-----------~-~~~~~~~~~l~~~g~~~~~ 261 (311)
+...-.+..+ ...++++++++|+|||.+++.+-. . .-.+.+.+.+++.|+....
T Consensus 112 ~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 177 (219)
T 3dh0_A 112 MAFTFHELSE--------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGR 177 (219)
T ss_dssp EESCGGGCSS--------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEE
T ss_pred eehhhhhcCC--------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEE
Confidence 8754332211 148999999999999999986411 0 0135677788888886543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-13 Score=117.47 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=93.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+. ..+++|+|+++.+++. ++..+++ |+.++++|+.+.+. ....+|.|+
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-----~~~~~D~v~ 127 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-----DLPLPEAVF 127 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-----TSCCCSEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-----cCCCCCEEE
Confidence 4679999999999999999998 7899999987655544 4455777 89999999988522 235799998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
+.... ..+ +++++.++|+|||++++.+...+....+.+.+++.|+....
T Consensus 128 ~~~~~------------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 128 IGGGG------------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp ECSCC------------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEE
T ss_pred ECCcc------------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEE
Confidence 76421 113 89999999999999999988888888888999998865443
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=117.69 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=79.2
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+|||||||+|.++..++++ |+.+++|+|+++.+++.+ ...+. .|+.++++|+.++ +.+++++|.|+++
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~~ 118 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-----PIEDNYADLIVSR 118 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-----SSCTTCEEEEEEE
T ss_pred CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-----CCCcccccEEEEC
Confidence 39999999999999999998 788999999876555544 34455 4899999999886 4467899999988
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..-.+... ...++++++++|+|||.+++.+
T Consensus 119 ~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 119 GSVFFWED--------VATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp SCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred chHhhccC--------HHHHHHHHHHhCCCCCEEEEEe
Confidence 64333211 1489999999999999999964
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=124.87 Aligned_cols=102 Identities=15% Similarity=0.226 Sum_probs=82.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++..|+.+++|+|+++.+++.+ ...+.+|+.++.+|+.++ +.+++++|.|++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~ 111 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL-----PFEDSSFDHIFV 111 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC-----CSCTTCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC-----CCCCCCeeEEEE
Confidence 46799999999999999999999999999999876555444 445778999999999876 446789999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-.+..+. ..+++++.++|+|||.+++..
T Consensus 112 ~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 112 CFVLEHLQSP--------EEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred echhhhcCCH--------HHHHHHHHHHcCCCcEEEEEE
Confidence 7543332211 489999999999999999864
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=122.18 Aligned_cols=121 Identities=11% Similarity=0.080 Sum_probs=89.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||||||+|.++..+++.. |..+++|+|+++. +++.++.+ .|+.++++|+.+... ++..+++||.|+
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~--~~~~~~~~D~V~ 152 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHK--YRMLIAMVDVIF 152 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGG--GGGGCCCEEEEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhh--hcccCCcEEEEE
Confidence 46799999999999999999985 7789999999855 44444443 689999999987421 132467999999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH----------HHHHHHHHHHhcCCCce
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----------VMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~----------~~~~~~~~l~~~g~~~~ 260 (311)
++.+.|+ ....++.++.++|||||.+++.+.... +.++ .+.+++.|+...
T Consensus 153 ~~~~~~~----------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~ 212 (233)
T 2ipx_A 153 ADVAQPD----------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQ 212 (233)
T ss_dssp ECCCCTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEE
T ss_pred EcCCCcc----------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceE
Confidence 9877553 113678899999999999999654321 3333 466677777544
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-13 Score=123.08 Aligned_cols=134 Identities=18% Similarity=0.242 Sum_probs=98.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++..|+.+++|+|+++.+++.+ +..+++|+.++++|+.+. + ++++||.|++
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~----~--~~~~fD~Iv~ 182 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA----L--AGQQFAMIVS 182 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG----G--TTCCEEEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh----c--ccCCccEEEE
Confidence 45799999999999999999999999999999877665554 345777999999998764 2 2578999999
Q ss_pred eCCCCCCCCchhh---------hh--------hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeee
Q 021567 201 QCPNPDFNRPEHR---------WR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 263 (311)
Q Consensus 201 ~fpdP~~k~~h~k---------rR--------l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~ 263 (311)
+.|-.+....|-. .. .....+++++.++|+|||.+++..... ..+.+.+.+.+.|+....+.
T Consensus 183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-QGEAVRQAFILAGYHDVETC 261 (276)
T ss_dssp CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-CHHHHHHHHHHTTCTTCCEE
T ss_pred CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch-HHHHHHHHHHHCCCcEEEEE
Confidence 8553322111100 00 122688999999999999999976433 35567778888888765554
Q ss_pred cc
Q 021567 264 QD 265 (311)
Q Consensus 264 ~d 265 (311)
.|
T Consensus 262 ~d 263 (276)
T 2b3t_A 262 RD 263 (276)
T ss_dssp EC
T ss_pred ec
Confidence 44
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=121.73 Aligned_cols=99 Identities=17% Similarity=0.267 Sum_probs=79.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++..+ +++|+|+++.+++.+ ...+.+|+.++++|+.++ ++++++||.|+.
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-----~~~~~~fD~V~~ 109 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-----PFTDERFHIVTC 109 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-----CSCTTCEEEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-----CCCCCCEEEEEE
Confidence 467999999999999999999864 999999876655554 445678999999999886 446889999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++.-.|..+. ..++++++++|||||.+++.
T Consensus 110 ~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 110 RIAAHHFPNP--------ASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhHhcCCH--------HHHHHHHHHHcCCCCEEEEE
Confidence 8654333221 48999999999999999985
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=124.71 Aligned_cols=102 Identities=10% Similarity=-0.015 Sum_probs=78.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-C--------------------CCcEEEEEccccch
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-G--------------------ITNGYFIATNATST 183 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~--------------------~~Nv~f~~~Da~~l 183 (311)
.+.+|||+|||+|..+..||++ +.+|+|||+|+.+++.+++. + ..++.|+++|+.++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4679999999999999999988 57999999999998888542 2 25899999999887
Q ss_pred hhhhhccC-CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 184 FRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 184 l~~~~~~~-~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.. .++||.|+....-.+... -....++++++++|||||++++.|
T Consensus 146 -----~~~~~~~FD~V~~~~~l~~l~~------~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 146 -----PRANIGKFDRIWDRGALVAINP------GDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp -----GGGCCCCEEEEEESSSTTTSCG------GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -----CcccCCCEEEEEEhhhhhhCCH------HHHHHHHHHHHHHcCCCeEEEEEE
Confidence 222 379999986533222111 012579999999999999997654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=123.13 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=84.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+++.+|..+++|+|+++.+++.+++. ..|+.++++|+.++ + ++++||.|+++..-
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~d~~~~-----~-~~~~fD~v~~~~~l 105 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-LPNTNFGKADLATW-----K-PAQKADLLYANAVF 105 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-STTSEEEECCTTTC-----C-CSSCEEEEEEESCG
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-CCCcEEEECChhhc-----C-ccCCcCEEEEeCch
Confidence 45789999999999999999998889999999999888888765 56899999999876 4 47899999998654
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|..+ ...++++++++|+|||.+++.+
T Consensus 106 ~~~~~--------~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 106 QWVPD--------HLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp GGSTT--------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred hhCCC--------HHHHHHHHHHhcCCCeEEEEEe
Confidence 44322 1489999999999999999976
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=119.68 Aligned_cols=119 Identities=17% Similarity=0.195 Sum_probs=93.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++. +..+++|+|+++.+++.+ ...+..|+.++++|+.+. .++++|.|++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-------~~~~fD~i~~ 131 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-------VDGKFDLIVA 131 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-------CCSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc-------CCCCceEEEE
Confidence 4679999999999999998874 567999999876655544 445777799999998764 3689999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+.+.. + ...+++++.++|+|||.+++.+......+.+.+.+.+.|+.....
T Consensus 132 ~~~~~------~-----~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 132 NILAE------I-----LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK 182 (205)
T ss_dssp ESCHH------H-----HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred CCcHH------H-----HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence 85421 1 158899999999999999997555555677888889998865544
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=123.39 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=80.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||||||+|.++..+++. +.+++|+|+++.+++.+++ .++ +++.++++|+.++. +..+++||.|+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~v~ 141 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA----SHLETPVDLIL 141 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG----GGCSSCEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh----hhcCCCceEEE
Confidence 3579999999999999999998 6799999987766655543 455 68999999998872 13578999999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
+...-.+..+. ..++++++++|||||.+++.+.+
T Consensus 142 ~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 142 FHAVLEWVADP--------RSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp EESCGGGCSCH--------HHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ECchhhcccCH--------HHHHHHHHHHcCCCeEEEEEEeC
Confidence 87543322111 48999999999999999997643
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=121.95 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=92.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||||||+|..++.+|..+|+.+|+|+|+++.+++ +++..+++|++++++|++++... +..+++||.|+.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~--~~~~~~fD~I~s 157 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE--AGHREAYARAVA 157 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS--TTTTTCEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcc--cccCCCceEEEE
Confidence 467899999999999999999999999999998765544 44456888999999999887211 012579999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC--cHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD--~~~~~~~~~~~l~~~g~~~~ 260 (311)
....++ +.+++.+.++|||||++++... ..+-...+.+.+...|+...
T Consensus 158 ~a~~~~------------~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~ 207 (249)
T 3g89_A 158 RAVAPL------------CVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLG 207 (249)
T ss_dssp ESSCCH------------HHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEE
T ss_pred CCcCCH------------HHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEE
Confidence 743321 5899999999999999987543 23333445566677776544
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=119.75 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=80.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
+.+|||||||+|.++..+++..+ +++|+|+++.+++.+++.-..++.++++|+.++ + ++++||.|++...-.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~----~--~~~~fD~v~~~~~l~ 114 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDA----Q--LPRRYDNIVLTHVLE 114 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC----C--CSSCEEEEEEESCGG
T ss_pred CCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc----C--cCCcccEEEEhhHHH
Confidence 56899999999999999999865 799999999988888765333899999999876 2 478999999875422
Q ss_pred CCCCchhhhhhhHHHHHHHHH-hcccCCeEEEEEeCc
Q 021567 206 DFNRPEHRWRMVQRSLVEAVS-DLLVHDGKVFLQSDI 241 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~-rvLkpGG~l~~~tD~ 241 (311)
+..+ ...++++++ ++|||||.+++.+.+
T Consensus 115 ~~~~--------~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 115 HIDD--------PVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp GCSS--------HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hhcC--------HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 2211 148999999 999999999997643
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=124.67 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=81.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHc------CCCcEEEEEccccchhhhhhccCC-----
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS------GITNGYFIATNATSTFRSIVASYP----- 192 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~------~~~Nv~f~~~Da~~ll~~~~~~~~----- 192 (311)
++.+|||||||+|.++..+++.+ +..+++|+|+++.+++.++++ ...|+.|+++|+.++ +..+
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~~~~ 110 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF-----KFLGADSVD 110 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC-----GGGCTTTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC-----Ccccccccc
Confidence 46899999999999999999886 889999999987766666432 257899999999886 2234
Q ss_pred -CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 193 -GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 193 -~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++||.|++...-.|. + ...+++++.++|+|||.|++
T Consensus 111 ~~~fD~V~~~~~l~~~-~--------~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF-D--------FEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SSCEEEEEEESCGGGS-C--------HHHHHHHHHHHEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh-C--------HHHHHHHHHHhcCCCcEEEE
Confidence 899999998665443 1 15899999999999999988
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=111.41 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=77.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+|++ ..+++|+|+++.+++.+ +..+++|++++++|+..+ .. ..+++||.|++
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l-~~---~~~~~fD~v~~ 95 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENL-DH---YVREPIRAAIF 95 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGG-GG---TCCSCEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHH-Hh---hccCCcCEEEE
Confidence 4679999999999999999988 78999999876655544 445778999999888775 21 23788999987
Q ss_pred eCCCCCC-CCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~-k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+++.... .............+++++.++|||||.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence 7421100 00000001122478999999999999999864
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=127.32 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=89.6
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHc----C-----------CCcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLS----G-----------ITNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~----~-----------~~Nv~f~~~Da~~ll~~~~ 188 (311)
++.+|||||||+|.++..+++. .|+.+++|+|+++.+++.++++ + ..|+.++++|+.+...
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~--- 181 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE--- 181 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc---
Confidence 4679999999999999999998 5778999999876665555432 1 3689999999987632
Q ss_pred ccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 189 ~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
+.++++||.|+++.++|+ .+++++.++|+|||.+++.+..........+.+.+.+
T Consensus 182 ~~~~~~fD~V~~~~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~ 236 (336)
T 2b25_A 182 DIKSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCE 236 (336)
T ss_dssp ------EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHT
T ss_pred ccCCCCeeEEEECCCCHH-------------HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Confidence 224678999999988886 4789999999999999998887777777777776543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=121.25 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=83.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCC--CcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||||||+|.++..+++++ +.+++|+|+++.+++.+++... .++.++++|+.++ +.++++||.|++..
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~ 128 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK-----EFPENNFDLIYSRD 128 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC-----CCCTTCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC-----CCCCCcEEEEeHHH
Confidence 46799999999999999999987 6799999999998888876532 6899999999876 44688999999875
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.-.+... -....++++++++|||||.+++.+
T Consensus 129 ~l~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 129 AILALSL------ENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp CGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcCh------HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 4332110 012589999999999999999864
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=117.46 Aligned_cols=103 Identities=13% Similarity=0.018 Sum_probs=84.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
.+.+|||||||+|.++..+++. ..+++|+|+++.+++.+++.+..|+.++++|+.++ + +++++|.|++...-
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~----~--~~~~~D~v~~~~~l 117 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW----T--PDRQWDAVFFAHWL 117 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC----C--CSSCEEEEEEESCG
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC----C--CCCceeEEEEechh
Confidence 3569999999999999999998 57999999999999998877778999999999875 2 47899999987543
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
.+... -....++++++++|+|||.+++.+.+
T Consensus 118 ~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 118 AHVPD------DRFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp GGSCH------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCCH------HHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 32211 01158999999999999999997643
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=118.74 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=77.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+|+..++..|+|+|+++.++ +.++. ..|+.++.+|+..... ..+ ..++||.|++
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~--~~~v~~~~~d~~~~~~-~~~-~~~~fD~V~~ 132 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--RNNIIPLLFDASKPWK-YSG-IVEKVDLIYQ 132 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--CSSEEEECSCTTCGGG-TTT-TCCCEEEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc--CCCeEEEEcCCCCchh-hcc-cccceeEEEE
Confidence 46799999999999999999987777999999987654 33332 3689999999877411 112 2478999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.++|. ....++++++++|||||.|++..
T Consensus 133 ~~~~~~----------~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 133 DIAQKN----------QIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CCCSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eccChh----------HHHHHHHHHHHHhCCCCEEEEEE
Confidence 865442 11356899999999999999974
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-13 Score=117.83 Aligned_cols=103 Identities=7% Similarity=0.066 Sum_probs=78.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCC-----cEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGIT-----NGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~-----Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
.+.+|||||||+|.++..+++..|..+++|+|+++.+++.+++ .+++ ++.++++|+... +..+++|
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~f 103 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-----DKRFSGY 103 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-----CGGGTTC
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-----ccccCCC
Confidence 3578999999999999999999888999999998777766653 2333 899999998654 3346899
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
|.|++...-.+.... ....+++++.++|||||.++..
T Consensus 104 D~V~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 104 DAATVIEVIEHLDEN------RLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp SEEEEESCGGGCCHH------HHHHHHHHHHTTTCCSEEEEEE
T ss_pred CEEEEHHHHHhCCHH------HHHHHHHHHHHhhCCCEEEEEc
Confidence 999987443222110 1148999999999999966553
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-13 Score=117.39 Aligned_cols=123 Identities=12% Similarity=0.062 Sum_probs=89.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||||||+|.++..+|+..+..+++|+|+++.+++.++++ ..+|+.++.+|+.+... ..+.. +++|.|+...
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~~-~~~D~v~~~~ 151 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQE-YANIV-EKVDVIYEDV 151 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGG-GTTTS-CCEEEEEECC
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccc-ccccC-ccEEEEEEec
Confidence 45789999999999999999998778999999998877766542 23789999999987311 11223 7899998665
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC-----c----HH-HHHHHHHHHHhcCCCce
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-----I----EE-VMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD-----~----~~-~~~~~~~~l~~~g~~~~ 260 (311)
++|. ....+++++.++|+|||.+++... . .. +.+++. .+.+.|+...
T Consensus 152 ~~~~----------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~ 208 (230)
T 1fbn_A 152 AQPN----------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIV 208 (230)
T ss_dssp CSTT----------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEE
T ss_pred CChh----------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEE
Confidence 5542 124789999999999999999521 1 11 223444 7778887544
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.4e-13 Score=113.34 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=81.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||+|||+|.++..++++. |..+++|+|+++.+++.+ +..++ +|+.++++|+.++.. ..+++||.|
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~fD~v 97 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK----YIDCPVKAV 97 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG----TCCSCEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh----hccCCceEE
Confidence 46799999999999999999985 678999999876655544 44565 689999999988721 246899999
Q ss_pred EEeCCC-CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpd-P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+++.|- |...............+++++.++|+|||.+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 988543 21111000001122479999999999999999875
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=125.37 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=83.8
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CC-------------------------------
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI------------------------------- 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~------------------------------- 170 (311)
+.+|||||||+|.++..+|++++..+++|+|+++.+++.++++ +.
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 5789999999999999999999989999999988777776543 10
Q ss_pred ---------------------------CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhh-hhhhHHHHH
Q 021567 171 ---------------------------TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR-WRMVQRSLV 222 (311)
Q Consensus 171 ---------------------------~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~k-rRl~~~~~l 222 (311)
.|+.|+++|+........+..+++||.|++...-.|. |-. .......++
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~i---hl~~~~~~~~~~l 203 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWV---HLNWGDEGLKRMF 203 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHH---HHHHHHHHHHHHH
T ss_pred cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHh---hhcCCHHHHHHHH
Confidence 4899999999865322333457899999987543221 100 001125899
Q ss_pred HHHHhcccCCeEEEEEeC
Q 021567 223 EAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 223 ~~i~rvLkpGG~l~~~tD 240 (311)
++++++|+|||.|++.+.
T Consensus 204 ~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHEEEEEEEEEECC
T ss_pred HHHHHHhCCCcEEEEecC
Confidence 999999999999999753
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-13 Score=129.02 Aligned_cols=130 Identities=13% Similarity=0.171 Sum_probs=96.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHc---------C-C--CcEEEEEccccchhhh-hhcc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS---------G-I--TNGYFIATNATSTFRS-IVAS 190 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~---------~-~--~Nv~f~~~Da~~ll~~-~~~~ 190 (311)
++.+|||||||+|.++..+++.. |+.+++|+|+++.+++.++++ | . .|+.|+++|+.++... ..+.
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 46799999999999999999985 788999999988777776543 3 2 6899999999886211 0033
Q ss_pred CCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH----------------------HHHHHH
Q 021567 191 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----------------------EVMLRM 248 (311)
Q Consensus 191 ~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----------------------~~~~~~ 248 (311)
++++||.|+.+..-.+..+ ...++++++++|||||.|++.+-.. ...+.+
T Consensus 163 ~~~~fD~V~~~~~l~~~~d--------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLSTN--------KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDF 234 (383)
T ss_dssp CTTCEEEEEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHH
T ss_pred CCCCEEEEEEccchhcCCC--------HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHH
Confidence 5789999998865443222 1489999999999999999863110 112567
Q ss_pred HHHHHhcCCCceee
Q 021567 249 KQQFLEYGKGKLVL 262 (311)
Q Consensus 249 ~~~l~~~g~~~~~~ 262 (311)
.+.+++.|+....+
T Consensus 235 ~~ll~~aGF~~v~~ 248 (383)
T 4fsd_A 235 RRLVAEAGFRDVRL 248 (383)
T ss_dssp HHHHHHTTCCCEEE
T ss_pred HHHHHHCCCceEEE
Confidence 77888888875533
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-13 Score=117.43 Aligned_cols=103 Identities=18% Similarity=0.303 Sum_probs=80.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CC-----CcEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI-----TNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~-----~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
++.+|||||||+|.++..+++. +.+++|+|+++.+++.+++. ++ .++.++.+|+..+ +.+++++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~ 102 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-----SFHDSSF 102 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-----CSCTTCE
T ss_pred CCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-----CCCCCce
Confidence 4679999999999999999998 67999999988877777652 22 2689999999876 4467899
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
|.|++...-.+..+... ...++++++++|+|||.+++.+
T Consensus 103 D~v~~~~~l~~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 103 DFAVMQAFLTSVPDPKE-----RSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp EEEEEESCGGGCCCHHH-----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEcchhhcCCCHHH-----HHHHHHHHHHHcCCCeEEEEEE
Confidence 99998754332222111 1379999999999999999864
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=122.14 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=95.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|||||||+|.++..+++..+..+++++|+++.+++.+++. ..+++.++.+|+.+.+. ...+++||
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~fD 171 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR---QTPDNTYD 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---SSCTTCEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH---hccCCcee
Confidence 35789999999999999999887788999999987776666532 23679999999988632 11367899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHhcCCCce
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~~g~~~~ 260 (311)
.|+++.++|+.. ...+...+++++++++|+|||.+++.+.+. .....+.+.+++.|+...
T Consensus 172 vIi~d~~~~~~~----~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v 235 (304)
T 3bwc_A 172 VVIIDTTDPAGP----ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASV 235 (304)
T ss_dssp EEEEECC-------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCcccc----chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcE
Confidence 999998877521 122344689999999999999999986553 345667778888887654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-13 Score=117.66 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=92.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+++..+. +++|+|+++.+++. +...++.+ +.++++|+.++ +.++++||.|+
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~ 119 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-----PFQNEELDLIW 119 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----SSCTTCEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-----CCCCCCEEEEE
Confidence 4579999999999999999999875 99999987655544 44556654 99999999776 44678999999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-------HH-------------HHHHHHHHHHhcCCCc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EE-------------VMLRMKQQFLEYGKGK 259 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-------~~-------------~~~~~~~~l~~~g~~~ 259 (311)
+...-.+. . .+.+++++.++|+|||.+++.+-. .. -.+...+.+++.|+..
T Consensus 120 ~~~~l~~~-~--------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 190 (257)
T 3f4k_A 120 SEGAIYNI-G--------FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTP 190 (257)
T ss_dssp EESCSCCC-C--------HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEE
T ss_pred ecChHhhc-C--------HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeE
Confidence 88654432 1 158999999999999999997511 11 1234567788888765
Q ss_pred eee
Q 021567 260 LVL 262 (311)
Q Consensus 260 ~~~ 262 (311)
...
T Consensus 191 v~~ 193 (257)
T 3f4k_A 191 TAH 193 (257)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.5e-13 Score=119.78 Aligned_cols=148 Identities=11% Similarity=0.096 Sum_probs=102.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
.+.+|||||||+|.++..+++ +..+++|+|+++.+++.+++.. +|+.++++|+.++ +. +++||.|++...-
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~d~~~~-----~~-~~~fD~v~~~~~l 127 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-PHLHFDVADARNF-----RV-DKPLDAVFSNAML 127 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-TTSCEEECCTTTC-----CC-SSCEEEEEEESCG
T ss_pred CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-CCCEEEECChhhC-----Cc-CCCcCEEEEcchh
Confidence 467999999999999999998 6789999999998888876553 6899999999876 32 6799999988653
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN 280 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~ 280 (311)
.|..+ ...++++++++|||||.+++.+.. ......+.+.+...++... + + .. ..
T Consensus 128 ~~~~d--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-----~~----~~ 185 (279)
T 3ccf_A 128 HWVKE--------PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNP----Q-A-----LN----PW 185 (279)
T ss_dssp GGCSC--------HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCG----G-G-----GC----CC
T ss_pred hhCcC--------HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccc----c-C-----cC----ce
Confidence 33221 148999999999999999987532 2333334444455444210 0 0 00 01
Q ss_pred CCCCCCHHHHHHHHcCCCeEEEE
Q 021567 281 SFGVRSDWEQHVIDRGAPMYRLM 303 (311)
Q Consensus 281 ~~~~~T~yE~~~~~~G~~i~~~~ 303 (311)
......+++..+.+.|..+-...
T Consensus 186 ~~~~~~~~~~~l~~aGf~~~~~~ 208 (279)
T 3ccf_A 186 YFPSIGEYVNILEKQGFDVTYAA 208 (279)
T ss_dssp CCCCHHHHHHHHHHHTEEEEEEE
T ss_pred eCCCHHHHHHHHHHcCCEEEEEE
Confidence 11224557777888887765543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-13 Score=118.40 Aligned_cols=123 Identities=17% Similarity=0.212 Sum_probs=90.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+.. +.+++|+|+++.+++.+ +..++ +|+.++++|+.++ +. +++||.|+
T Consensus 36 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~fD~V~ 108 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-----VA-NEKCDVAA 108 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-----CC-SSCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC-----Cc-CCCCCEEE
Confidence 46799999999999999999987 57999999876655554 44566 4899999999876 33 78999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-------HHH--------------HHHHHHHHHhcCCC
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EEV--------------MLRMKQQFLEYGKG 258 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-------~~~--------------~~~~~~~l~~~g~~ 258 (311)
+...-.+..+ ...++++++++|||||.+++.... ..+ .....+.+++.|+.
T Consensus 109 ~~~~~~~~~~--------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 180 (256)
T 1nkv_A 109 CVGATWIAGG--------FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYD 180 (256)
T ss_dssp EESCGGGTSS--------SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBC
T ss_pred ECCChHhcCC--------HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCe
Confidence 7543221111 148999999999999999986311 111 14566778888887
Q ss_pred ceee
Q 021567 259 KLVL 262 (311)
Q Consensus 259 ~~~~ 262 (311)
...+
T Consensus 181 ~~~~ 184 (256)
T 1nkv_A 181 VVEM 184 (256)
T ss_dssp CCEE
T ss_pred eEEE
Confidence 5543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-13 Score=119.57 Aligned_cols=123 Identities=14% Similarity=0.073 Sum_probs=92.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++ +.++.+|+.+.+. +.++++||.|++...-
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~----~~~~~~d~~~~~~---~~~~~~fD~i~~~~~l 111 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK----FNVVKSDAIEYLK---SLPDKYLDGVMISHFV 111 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT----SEEECSCHHHHHH---TSCTTCBSEEEEESCG
T ss_pred CCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh----cceeeccHHHHhh---hcCCCCeeEEEECCch
Confidence 3578999999999999999998 56899999999998888654 8899999988643 3358999999987543
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH------------------HHHHHHHHHhcCCCceee
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV------------------MLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~------------------~~~~~~~l~~~g~~~~~~ 262 (311)
.+.... ....++++++++|||||.+++.+.+... .+.+.+.+++.|+.....
T Consensus 112 ~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 112 EHLDPE------RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp GGSCGG------GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred hhCCcH------HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 222111 1158999999999999999997643211 145666778888765443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=114.85 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=92.7
Q ss_pred CCCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+||||||| +|.++..+++.. ..+++|+|+++.+++.+ ...+. |+.++++|+..+ . +..+++||.|+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~-~---~~~~~~fD~I~ 128 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGII-K---GVVEGTFDVIF 128 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSS-T---TTCCSCEEEEE
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhh-h---hcccCceeEEE
Confidence 46899999999 999999999986 68999999876655544 44566 899999998654 2 22468999999
Q ss_pred EeCCCCCCCC-------------chhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-HHHHHHHHHHHHhcCCCce
Q 021567 200 IQCPNPDFNR-------------PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 200 i~fpdP~~k~-------------~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~~~~~~~~~~l~~~g~~~~ 260 (311)
++.|-.+... .+.. .....+++++.++|+|||.+++.+.. ....+.+.+.+.+.|+...
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~ 201 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGE--EFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVK 201 (230)
T ss_dssp ECCCCC---------------CCSSSC--HHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred ECCCCcCCccccccChhhhhccCccch--HHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceE
Confidence 8733211100 0000 01268999999999999999997644 3556778888899888543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-13 Score=119.39 Aligned_cols=126 Identities=9% Similarity=0.047 Sum_probs=92.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC----CCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~----~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++.. ..+++|+|+++.+++.++++. ..++.++++|+.++ +.++++||.|++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~ 152 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-----TPEPDSYDVIWI 152 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-----CCCSSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc-----CCCCCCEEEEEE
Confidence 36799999999999999999886 569999999888777775432 34699999998776 335678999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH--------------HHHHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--------------VMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~--------------~~~~~~~~l~~~g~~~~~~ 262 (311)
...-.+..+. ....+++++.++|+|||.+++.+.... -.+.+.+.+++.|+.....
T Consensus 153 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 153 QWVIGHLTDQ------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp ESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 8543322110 114899999999999999999542110 2456677778888875544
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=119.42 Aligned_cols=126 Identities=10% Similarity=-0.045 Sum_probs=88.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhccCCCcEeEEEE-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSI- 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i- 200 (311)
++.+|||||||+|.++..+++..+ .+++|+|+++.+++.++++. ..|+.++++|+.++.. ++++++||.|++
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~fD~V~~d 135 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP---TLPDGHFDGILYD 135 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG---GSCTTCEEEEEEC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhc---ccCCCceEEEEEC
Confidence 467899999999999999987543 48999999888777765431 2589999999988643 335789999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH---------------HHHHHHHHHHhcCCCc
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------------VMLRMKQQFLEYGKGK 259 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~---------------~~~~~~~~l~~~g~~~ 259 (311)
.++.. ....| ....+.++++++++|||||+|++. +... +.+.....+.+.|+..
T Consensus 136 ~~~~~-~~~~~---~~~~~~~l~~~~r~LkpgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 136 TYPLS-EETWH---THQFNFIKNHAFRLLKPGGVLTYC-NLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp CCCCB-GGGTT---THHHHHHHHTHHHHEEEEEEEEEC-CHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred Ccccc-hhhhh---hhhHHHHHHHHHHhcCCCeEEEEE-ecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence 44321 00111 111247899999999999999874 2211 1233455677888864
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=110.55 Aligned_cols=116 Identities=13% Similarity=0.187 Sum_probs=89.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc--EEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN--GYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N--v~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||||||+|.++..+++. ..+++|+|+++.+++.+ ...+++| +.++++|+.+. + .++++|.|
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~D~v 123 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN----V--KDRKYNKI 123 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT----C--TTSCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc----c--ccCCceEE
Confidence 4679999999999999999988 67999999876555544 3457777 99999998764 2 36789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhc
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~ 255 (311)
+++.|-.+ .. .....+++++.++|+|||.+++.+........+.+.+.+.
T Consensus 124 ~~~~~~~~-----~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 173 (194)
T 1dus_A 124 ITNPPIRA-----GK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV 173 (194)
T ss_dssp EECCCSTT-----CH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred EECCCccc-----ch--hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH
Confidence 98744221 01 1225899999999999999999887766666677777665
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-13 Score=120.23 Aligned_cols=116 Identities=10% Similarity=0.131 Sum_probs=91.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccC-CCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY-PGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~-~~s~D~V~i~fp 203 (311)
++.+|||||||+|.++..+++. ..+++|+|+++.+++.++++ ..|+.++++|+.+.+ |.. +++||.|+.+ +
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~d~~~~~----~~~~~~~fD~v~~~-~ 119 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-APHADVYEWNGKGEL----PAGLGAPFGLIVSR-R 119 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-CTTSEEEECCSCSSC----CTTCCCCEEEEEEE-S
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-CCCceEEEcchhhcc----CCcCCCCEEEEEeC-C
Confidence 4689999999999999999998 57999999999999888766 568999999995432 445 7899999987 4
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
++. .++++++++|||||.++.... ....+.+.+.+.+.|+.....
T Consensus 120 ~~~-------------~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 GPT-------------SVILRLPELAAPDAHFLYVGP-RLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp CCS-------------GGGGGHHHHEEEEEEEEEEES-SSCCTHHHHHHHHTTCEEEEE
T ss_pred CHH-------------HHHHHHHHHcCCCcEEEEeCC-cCCHHHHHHHHHHCCCeEEEE
Confidence 442 778999999999999984321 112345677788888765543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=113.67 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=81.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++.+|||||||+|.++..+++.. ..+++|+|+++.+++.+++... .++.++++|+.++ +.+++++|.|++..+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~ 116 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKL-----HLPQDSFDLAYSSLA 116 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGC-----CCCTTCEEEEEEESC
T ss_pred CCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhc-----cCCCCCceEEEEecc
Confidence 46799999999999999999873 2399999999998888876532 4799999999876 335789999998754
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
-.+... ...++++++++|+|||.+++.+.+
T Consensus 117 l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 117 LHYVED--------VARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp GGGCSC--------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccch--------HHHHHHHHHHhcCcCcEEEEEeCC
Confidence 322211 148999999999999999997644
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=116.32 Aligned_cols=99 Identities=23% Similarity=0.340 Sum_probs=79.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++..+ +++|+|+++.+++.+ ...+++|+.++++|+.++ ++++++||.|++
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v~~ 93 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-----PFPDDSFDIITC 93 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-----CSCTTCEEEEEE
T ss_pred CCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC-----CCCCCcEEEEEE
Confidence 467999999999999999999864 899999876555444 445778999999999876 446789999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...-.+..+ ...++++++++|||||.+++.
T Consensus 94 ~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 94 RYAAHHFSD--------VRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp ESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCchhhccC--------HHHHHHHHHHHcCCCcEEEEE
Confidence 754332211 148999999999999999985
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-13 Score=117.48 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=81.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCC--CcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+.+|||||||+|.++..++++. ..+++|+|+++.+++.++++-. .++.++++|+.++ +.++++||.|++..
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~ 166 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-----TLPPNTYDLIVIQW 166 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-----CCCSSCEEEEEEES
T ss_pred CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHC-----CCCCCCeEEEEEcc
Confidence 46799999999999999999886 4689999999888887765432 5899999999876 44578999999875
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.-.+... -....++++++++|||||.+++.+
T Consensus 167 ~l~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 167 TAIYLTD------ADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp CGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhCCH------HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 4222110 012589999999999999999975
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-12 Score=109.73 Aligned_cols=101 Identities=10% Similarity=0.052 Sum_probs=78.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++. +.+++|+|+++.+++.+ ...+.+|+.++++|+.++ +. ++++|.|++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~-~~~~D~v~~ 103 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL-----TF-DRQYDFILS 103 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGC-----CC-CCCEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhC-----CC-CCCceEEEE
Confidence 3569999999999999999987 57999999876655554 345677899999998876 33 788999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..+-.+.... ....+++++.++|+|||.+++.+
T Consensus 104 ~~~l~~~~~~------~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 104 TVVLMFLEAK------TIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp ESCGGGSCGG------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cchhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEE
Confidence 8543332111 12589999999999999988754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-13 Score=119.25 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=97.0
Q ss_pred chhhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH
Q 021567 79 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV 158 (311)
Q Consensus 79 s~~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~ 158 (311)
+..+...|+..+..||.+.... .+. . .+....++...... ++.+|||||||+|.++..+++. ..+++|+|++
T Consensus 14 ~~~~~~~~~~~a~~Yd~~~~~~-~~~-~---~~~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s 85 (260)
T 2avn_A 14 KLRSWEFYDRIARAYDSMYETP-KWK-L---YHRLIGSFLEEYLK-NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPS 85 (260)
T ss_dssp ECCHHHHHHHHHHHHGGGGCSH-HHH-H---HHHHHHHHHHHHCC-SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESC
T ss_pred hhhhcchhhHHHHHHHHhcccc-chh-H---HHHHHHHHHHHhcC-CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCC
Confidence 4456667888888888876211 000 0 00001122222222 4679999999999999999987 5699999999
Q ss_pred HHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC-CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 159 THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 159 ~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd-P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+.+++.++++...+ ++++|+.++ +.++++||.|++..+- .+..+ ...++++++++|+|||.+++
T Consensus 86 ~~~l~~a~~~~~~~--~~~~d~~~~-----~~~~~~fD~v~~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~ 150 (260)
T 2avn_A 86 KEMLEVAREKGVKN--VVEAKAEDL-----PFPSGAFEAVLALGDVLSYVEN--------KDKAFSEIRRVLVPDGLLIA 150 (260)
T ss_dssp HHHHHHHHHHTCSC--EEECCTTSC-----CSCTTCEEEEEECSSHHHHCSC--------HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHhhcCCC--EEECcHHHC-----CCCCCCEEEEEEcchhhhcccc--------HHHHHHHHHHHcCCCeEEEE
Confidence 99888887664434 889998876 4457899999876321 01000 25899999999999999999
Q ss_pred EeCcH
Q 021567 238 QSDIE 242 (311)
Q Consensus 238 ~tD~~ 242 (311)
.+.+.
T Consensus 151 ~~~~~ 155 (260)
T 2avn_A 151 TVDNF 155 (260)
T ss_dssp EEEBH
T ss_pred EeCCh
Confidence 87664
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=120.08 Aligned_cols=139 Identities=10% Similarity=0.053 Sum_probs=94.2
Q ss_pred hhhhhh-hhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH
Q 021567 82 GLNMVE-SGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH 160 (311)
Q Consensus 82 ~~~~fe-~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~ 160 (311)
..++|+ ..+..||.+.............. ..++...... .+.+|||||||+|.++..+++.. .+++|+|+++.
T Consensus 10 ~~~~y~~~~a~~yd~~~~~~~~~~~~~~~~---~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~ 83 (263)
T 3pfg_A 10 PQADYSGEIAELYDLVHQGKGKDYHREAAD---LAALVRRHSP-KAASLLDVACGTGMHLRHLADSF--GTVEGLELSAD 83 (263)
T ss_dssp CBCSCCHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHHCT-TCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHH
T ss_pred cccccchhHHHHHHHHhhcCCCCHHHHHHH---HHHHHHhhCC-CCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHH
Confidence 334555 57788887765322221111100 1111111222 35799999999999999999884 58999999999
Q ss_pred HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 161 CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 161 a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+++.++++ ..++.++++|+.++ +. +++||.|++.+ .-.+.... -....++++++++|+|||.+++.
T Consensus 84 ~~~~a~~~-~~~~~~~~~d~~~~-----~~-~~~fD~v~~~~~~l~~~~~~-----~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 84 MLAIARRR-NPDAVLHHGDMRDF-----SL-GRRFSAVTCMFSSIGHLAGQ-----AELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp HHHHHHHH-CTTSEEEECCTTTC-----CC-SCCEEEEEECTTGGGGSCHH-----HHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHhh-CCCCEEEECChHHC-----Cc-cCCcCEEEEcCchhhhcCCH-----HHHHHHHHHHHHhcCCCcEEEEE
Confidence 88888765 34899999999876 32 78999999875 32222110 01248899999999999999985
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=126.42 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=78.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CC---CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI---TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~---~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
..+|||||||+|.++..+++. +.+++|+|+++.+++.++++ +. .|+.++++|+.++ +. +++||.|
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~fD~v 154 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-----AL-DKRFGTV 154 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-----CC-SCCEEEE
T ss_pred CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-----Cc-CCCcCEE
Confidence 458999999999999999988 57899999987766666432 22 5899999999886 32 7899988
Q ss_pred EEeCC-CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 199 SIQCP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 199 ~i~fp-dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
++.+. -.+.. . -....++++++++|+|||.|++.+.+...
T Consensus 155 ~~~~~~~~~~~-~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 155 VISSGSINELD-E-----ADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp EECHHHHTTSC-H-----HHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred EECCcccccCC-H-----HHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 75421 11110 0 01258999999999999999998765543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=116.84 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=80.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..++++. +.+++|+|+++.+++.+ ...++ +++.++.+|+.++ ++++++||.|+
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~ 134 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-----PFEDASFDAVW 134 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CSCTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-----CCCCCCccEEE
Confidence 46799999999999999999986 68999999876655544 34465 4799999999876 44678999999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-.+..+. ..++++++++|||||.+++.+
T Consensus 135 ~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 135 ALESLHHMPDR--------GRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp EESCTTTSSCH--------HHHHHHHHTTEEEEEEEEEEE
T ss_pred EechhhhCCCH--------HHHHHHHHHHcCCCeEEEEEE
Confidence 87554433221 489999999999999999864
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.6e-13 Score=115.78 Aligned_cols=108 Identities=10% Similarity=0.011 Sum_probs=80.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCC-----cEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGIT-----NGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~-----Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
.+.+|||||||+|.++..++++.|..+++|+|+++.+++.+++ .+++ |+.++++|+... +..+++|
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~f 103 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-----DKRFHGY 103 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-----CGGGCSC
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-----cccCCCc
Confidence 3579999999999999999999888899999998777766653 2333 799999998654 2245789
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
|.|++...-.+.... ....+++++.++|||||.+++ +++..+
T Consensus 104 D~v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~li~-~~~~~~ 145 (217)
T 3jwh_A 104 DAATVIEVIEHLDLS------RLGAFERVLFEFAQPKIVIVT-TPNIEY 145 (217)
T ss_dssp SEEEEESCGGGCCHH------HHHHHHHHHHTTTCCSEEEEE-EEBHHH
T ss_pred CEEeeHHHHHcCCHH------HHHHHHHHHHHHcCCCEEEEE-ccCccc
Confidence 999987543222110 114899999999999996665 555443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=117.26 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=81.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---CCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++.+|||||||+|.++..+++. ..+++|+|+++.+++.++++ +..|+.++++|+.++ +.++++||.|++.
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~ 111 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI-----PLPDESVHGVIVV 111 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC-----CSCTTCEEEEEEE
T ss_pred CCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC-----CCCCCCeeEEEEC
Confidence 4679999999999999999987 57999999988887777654 357899999999876 4467899999988
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..-.|..+ ...++++++++|+|||.+++.
T Consensus 112 ~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 112 HLWHLVPD--------WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp SCGGGCTT--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CchhhcCC--------HHHHHHHHHHHCCCCcEEEEE
Confidence 65444321 148999999999999999986
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-14 Score=120.55 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=81.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|.++..+++..|+.+++|+|+++.+++.+++ .+. ++.++++|+.+.+... ....++||.|++
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-~~~~~~fD~i~~ 107 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIER-AERGRPWHAIVS 107 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHH-HHTTCCBSEEEE
T ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhh-hhccCcccEEEE
Confidence 4679999999999999999999998999999998766665543 344 7899999988743210 012489999998
Q ss_pred eCCCCCCCCchhhh----------hh--------hHHHHHHHHHhcccCCeE-EEEEeCcHHHHHHHHHHHH--hcCCCc
Q 021567 201 QCPNPDFNRPEHRW----------RM--------VQRSLVEAVSDLLVHDGK-VFLQSDIEEVMLRMKQQFL--EYGKGK 259 (311)
Q Consensus 201 ~fpdP~~k~~h~kr----------Rl--------~~~~~l~~i~rvLkpGG~-l~~~tD~~~~~~~~~~~l~--~~g~~~ 259 (311)
+.|-......++-. .+ ....+++++.++|+|||. +++.+.. ...+.+.+.+. +.|+..
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~l~~~~~gf~~ 186 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH-NQADEVARLFAPWRERGFR 186 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-SCHHHHHHHTGGGGGGTEE
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-ccHHHHHHHHHHhhcCCce
Confidence 74422111111000 00 016889999999999999 6665543 33556666777 777654
Q ss_pred eee
Q 021567 260 LVL 262 (311)
Q Consensus 260 ~~~ 262 (311)
..+
T Consensus 187 ~~~ 189 (215)
T 4dzr_A 187 VRK 189 (215)
T ss_dssp CCE
T ss_pred EEE
Confidence 433
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=122.07 Aligned_cols=97 Identities=9% Similarity=0.063 Sum_probs=76.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..++.+.++.+|+|+|+++.+++.|+ +.+++|++|+++|+.++ + +++||.|++
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l-----~--d~~FDvV~~ 194 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI-----D--GLEFDVLMV 194 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG-----G--GCCCSEEEE
T ss_pred CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC-----C--CCCcCEEEE
Confidence 578999999999988755555567899999998766555544 45778999999999876 3 678999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-|. ..++++++.++|||||+|++..
T Consensus 195 ~a~~~d-----------~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 195 AALAEP-----------KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp CTTCSC-----------HHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCccC-----------HHHHHHHHHHHcCCCcEEEEEc
Confidence 643221 1489999999999999999975
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=118.32 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=92.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+++. +..+++|+|+++.+++.+ +..++ +++.++++|+.++ +.++++||.|+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~i~ 119 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-----PFRNEELDLIW 119 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CCCTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-----CCCCCCEEEEE
Confidence 4679999999999999999998 778999999876555444 44566 4699999999876 44578999999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-------HHH-------------HHHHHHHHHhcCCCc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EEV-------------MLRMKQQFLEYGKGK 259 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-------~~~-------------~~~~~~~l~~~g~~~ 259 (311)
+..+-.+. -...+++++.++|||||.+++.+-. ... ...+.+.+++.|+..
T Consensus 120 ~~~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 190 (267)
T 3kkz_A 120 SEGAIYNI---------GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLP 190 (267)
T ss_dssp ESSCGGGT---------CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEE
T ss_pred EcCCceec---------CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEE
Confidence 87543321 1258999999999999999986421 111 234667788888875
Q ss_pred eee
Q 021567 260 LVL 262 (311)
Q Consensus 260 ~~~ 262 (311)
...
T Consensus 191 v~~ 193 (267)
T 3kkz_A 191 VAT 193 (267)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=116.54 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=90.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|.++..+++. ..+++|+|+++.+++.++ ..++ +|+.++.+|+.+.. + .++.+|.|+
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~--~~~~~D~v~ 163 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE---V--PEGIFHAAF 163 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC---C--CTTCBSEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc---c--CCCcccEEE
Confidence 4679999999999999999998 679999998776655554 3465 68999999987751 1 356899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~ 255 (311)
++.|+|+ .+++++.++|+|||.+++.+........+.+.+.+.
T Consensus 164 ~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 164 VDVREPW-------------HYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY 206 (248)
T ss_dssp ECSSCGG-------------GGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred ECCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 9877664 678999999999999999998777777777777665
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-12 Score=108.20 Aligned_cols=116 Identities=13% Similarity=0.238 Sum_probs=92.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++ ..+. +++.++++|+.+.+ + ..+.+|.|+
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~-~~~~~D~v~ 105 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL----C-KIPDIDIAV 105 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH----T-TSCCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhc----c-cCCCCCEEE
Confidence 46799999999999999999886 79999998766555543 4566 68999999987632 2 125899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
+..+.+. ...+++++.++|+|||.+++.+..........+.+.+.|+.
T Consensus 106 ~~~~~~~-----------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 153 (192)
T 1l3i_A 106 VGGSGGE-----------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFD 153 (192)
T ss_dssp ESCCTTC-----------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCC
T ss_pred ECCchHH-----------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCc
Confidence 8754321 15899999999999999999887777788888899999874
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.1e-13 Score=114.47 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=79.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.++..+++..|+.+++|+|+++.+++.+ ...+++|+.++++|+.+. + +++++|.|+++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~D~i~~~ 139 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-----P-SEPPFDGVISR 139 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-----C-CCSCEEEEECS
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC-----C-ccCCcCEEEEe
Confidence 5789999999999999999999999999999876655544 445777899999999876 2 35789999865
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
...+ ...+++++.++|+|||.+++...
T Consensus 140 ~~~~------------~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 140 AFAS------------LNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp CSSS------------HHHHHHHHTTSEEEEEEEEEEES
T ss_pred ccCC------------HHHHHHHHHHhcCCCcEEEEEeC
Confidence 3211 14899999999999999999754
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=111.46 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=85.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC--CCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||||||+|.++..+++..+. +++|+|+++.+++.++++. ..++.++++|+.++ +.++++||.|+.+.
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~v~~~~ 115 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL-----DFPSASFDVVLEKG 115 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC-----CSCSSCEEEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC-----CCCCCcccEEEECc
Confidence 4678999999999999999998654 8999999988888776542 35899999999876 33578999998753
Q ss_pred ---------CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 203 ---------PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 203 ---------pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
++||....++.. ....+++++.++|+|||.+++.+-..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 116 TLDALLAGERDPWTVSSEGVH--TVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HHHHHTTTCSCTTSCCHHHHH--HHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred chhhhccccccccccccchhH--HHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 345543322221 22689999999999999999987554
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.6e-13 Score=121.45 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=91.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|.+++.+|+..+. +++|+|+++.+++.+ +.+++.| ++++++|+.++ + .+++||.|+
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~-----~-~~~~fD~Vi 197 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-----P-GENIADRIL 197 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-----C-CCSCEEEEE
T ss_pred CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHh-----c-ccCCccEEE
Confidence 3689999999999999999998765 899999876655544 4457765 99999999887 2 267899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc------HHHHHHHHHHHHhcCCCce
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------EEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~------~~~~~~~~~~l~~~g~~~~ 260 (311)
++.|... ..+++++.++|+|||.+++.+.. ....+.+.+.+.+.|+...
T Consensus 198 ~~~p~~~------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 198 MGYVVRT------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp ECCCSSG------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred ECCchhH------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeE
Confidence 8744221 37889999999999999996543 2445677778888887644
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-12 Score=114.09 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=78.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+.+|||||||+|.++..+|+..|+.+++|+|+++.+++ +++..++. |+.++++|+.+.++. ..+++||.|++
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~fD~V~~ 148 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VNDKVYDMIFI 148 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HTTSCEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hccCCccEEEE
Confidence 57999999999999999999888999999998765544 44455664 899999999886430 13689999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
..+.+. .+.+++++.++|+|||.|++
T Consensus 149 ~~~~~~-----------~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 149 DAAKAQ-----------SKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp ETTSSS-----------HHHHHHHHGGGEEEEEEEEE
T ss_pred cCcHHH-----------HHHHHHHHHHhcCCCeEEEE
Confidence 743221 25799999999999999987
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-12 Score=119.26 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=89.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------C--CCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|||||||+|.++..+++..|..+++++|+++.+++.++++ + .++++++.+|+.+.+. ..+++||
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~----~~~~~fD 165 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR----KFKNEFD 165 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG----GCSSCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh----hCCCCce
Confidence 35789999999999999999987788999999987776666532 2 3689999999987643 2367899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
.|++..++||... ...+...+++++++++|+|||.+++.+.+ ......+.+.+.+.
T Consensus 166 ~Ii~d~~~~~~~~---~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 225 (296)
T 1inl_A 166 VIIIDSTDPTAGQ---GGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV 225 (296)
T ss_dssp EEEEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcccCc---hhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH
Confidence 9999988875321 12234469999999999999999998654 33345556666655
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=113.33 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=81.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC--CCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
...+|||||||+|.++..+++.. .+++|+|+++.+++.++++. ..|+.++++|+.++ + ++++||.|+++.
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-----~-~~~~fD~v~~~~ 122 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQF-----S-TAELFDLIVVAE 122 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTC-----C-CSCCEEEEEEES
T ss_pred CCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhC-----C-CCCCccEEEEcc
Confidence 45789999999999999999984 58999999988888876542 35899999999886 3 478999999885
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
.-.+..+... ...++++++++|+|||.+++.+..
T Consensus 123 ~l~~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 123 VLYYLEDMTQ-----MRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp CGGGSSSHHH-----HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred HHHhCCCHHH-----HHHHHHHHHHHcCCCCEEEEEecC
Confidence 4333222111 147899999999999999997643
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=110.97 Aligned_cols=124 Identities=14% Similarity=0.209 Sum_probs=91.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..++++. +++|+|+++.+++. ..|+.++++|+.+. + .+++||.|+++.|-
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-----~~~~~~~~~d~~~~----~--~~~~fD~i~~n~~~ 88 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-----HRGGNLVRADLLCS----I--NQESVDVVVFNPPY 88 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-----CSSSCEEECSTTTT----B--CGGGCSEEEECCCC
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-----ccCCeEEECChhhh----c--ccCCCCEEEECCCC
Confidence 35699999999999999999986 99999999988876 46799999998764 2 35899999987543
Q ss_pred CCCCCchh-hhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeee
Q 021567 205 PDFNRPEH-RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 263 (311)
Q Consensus 205 P~~k~~h~-krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~ 263 (311)
-+...... ........+++++.+.| |||.+++.+......+.+.+.+++.|+....+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~ 147 (170)
T 3q87_B 89 VPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILK 147 (170)
T ss_dssp BTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEE
T ss_pred ccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEE
Confidence 22111100 00000136788888888 999999977555667788888999998765554
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=112.10 Aligned_cols=102 Identities=19% Similarity=0.235 Sum_probs=80.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
.+.+|||||||+|.++..+++. +.+++|+|+++.+++.++++ .++.+..+|+.++....+ ..+.+||.|++...-
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~-~~~~~fD~v~~~~~l 126 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA--GAGEVHLASYAQLAEAKV-PVGKDYDLICANFAL 126 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT--CSSCEEECCHHHHHTTCS-CCCCCEEEEEEESCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh--cccccchhhHHhhccccc-ccCCCccEEEECchh
Confidence 3579999999999999999988 57999999999999888776 578899999887632211 134569999987543
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
. ... ...++++++++|+|||.+++.+.
T Consensus 127 ~-~~~--------~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 127 L-HQD--------IIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp C-SSC--------CHHHHHHHHHTEEEEEEEEEEEC
T ss_pred h-hhh--------HHHHHHHHHHHhCCCeEEEEEec
Confidence 2 111 14899999999999999999764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=122.66 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=87.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------CC--CcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------GI--TNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|||||||+|.++..+++..|..+++++|+++.+++.++++ ++ ++++++++|+.+.+.. ..+++||
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~---~~~~~fD 196 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN---AAEGSYD 196 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT---SCTTCEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh---ccCCCcc
Confidence 45799999999999999999987888999999987777666532 22 5899999999876432 1367899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
+|+++.++|+.. ...+..++++++++++|+|||.+++.+++
T Consensus 197 lIi~d~~~p~~~----~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 197 AVIVDSSDPIGP----AKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EEEECCCCTTSG----GGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEECCCCccCc----chhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 999988777621 11244579999999999999999997554
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=121.43 Aligned_cols=118 Identities=15% Similarity=0.081 Sum_probs=87.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..+||+|||+|.+++.+|... |+..++|+|+++.++ ++++..+++++.|.++|+.++ +.+...+|.|+
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~-----~~~~~~~D~Ii 277 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL-----PRFFPEVDRIL 277 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG-----GGTCCCCSEEE
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC-----ccccCCCCEEE
Confidence 45789999999999999999987 889999999866544 444556777999999999987 22356689999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHH
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLR 247 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~ 247 (311)
++-|--+..............+++++.++|+|||.+++.|.+..+.+.
T Consensus 278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~ 325 (354)
T 3tma_A 278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKR 325 (354)
T ss_dssp ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHH
T ss_pred ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Confidence 884422211111111223478999999999999999999988765443
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.5e-13 Score=115.56 Aligned_cols=122 Identities=10% Similarity=0.013 Sum_probs=91.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++- ++.+..+|+..+ + .+++||.|++...-
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~--~~~~~~~d~~~~-----~-~~~~fD~v~~~~~l 112 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL--GRPVRTMLFHQL-----D-AIDAYDAVWAHACL 112 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH--TSCCEECCGGGC-----C-CCSCEEEEEECSCG
T ss_pred CCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc--CCceEEeeeccC-----C-CCCcEEEEEecCch
Confidence 3579999999999999999987 579999999988888876542 577889998876 3 57899999987543
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH--------------HHHHHHHHHHhcC-CCceee
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--------------VMLRMKQQFLEYG-KGKLVL 262 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~--------------~~~~~~~~l~~~g-~~~~~~ 262 (311)
.+.. +-....++++++++|||||.+++.+.... -.+.+.+.+++.| +....+
T Consensus 113 ~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 113 LHVP------RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp GGSC------HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred hhcC------HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 2211 01125899999999999999999742211 2456677778888 776544
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=114.12 Aligned_cols=97 Identities=9% Similarity=0.093 Sum_probs=79.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++.+|||||||+|.++..+ +. +++|+|+++.+++.++++. .++.++++|+.++ +.++++||.|++...
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~ 104 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-PEATWVRAWGEAL-----PFPGESFDVVLLFTT 104 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-TTSEEECCCTTSC-----CSCSSCEEEEEEESC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-CCcEEEEcccccC-----CCCCCcEEEEEEcCh
Confidence 4679999999999999887 34 8999999998888887654 6899999999876 446789999998865
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
-.+..+ ...++++++++|||||.+++.+-
T Consensus 105 l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 105 LEFVED--------VERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp TTTCSC--------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcCC--------HHHHHHHHHHHcCCCCEEEEEec
Confidence 444322 14899999999999999999763
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.9e-12 Score=105.49 Aligned_cols=114 Identities=14% Similarity=0.143 Sum_probs=91.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++ +..+++|+|+++.+++.+ ...+++|+.++++|+.+. + +++++|.|++
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~D~i~~ 106 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV----L--DKLEFNKAFI 106 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH----G--GGCCCSEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc----c--cCCCCcEEEE
Confidence 467999999999999999998 688999999876555444 445778899999998763 2 2468999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
+.+ . ....+++++.++ |||.+++.+........+.+.+++.|+...
T Consensus 107 ~~~-~-----------~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 152 (183)
T 2yxd_A 107 GGT-K-----------NIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVD 152 (183)
T ss_dssp CSC-S-----------CHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred CCc-c-----------cHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEE
Confidence 865 1 114889999988 999999988777778889999999996543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=109.49 Aligned_cols=125 Identities=11% Similarity=0.059 Sum_probs=93.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++ ..++.++++|+.++ +.+++++|.|++..+.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~-~~~~~~~~~d~~~~-----~~~~~~~D~i~~~~~~ 117 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQD-FPEARWVVGDLSVD-----QISETDFDLIVSAGNV 117 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHH-CTTSEEEECCTTTS-----CCCCCCEEEEEECCCC
T ss_pred CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHh-CCCCcEEEcccccC-----CCCCCceeEEEECCcH
Confidence 4679999999999999999988 57999999999888887654 35799999998875 3357899999876221
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH--HHHHHHHHHHhcCCCceee
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--VMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~--~~~~~~~~l~~~g~~~~~~ 262 (311)
.+ +...-....+++++.++|+|||.+++.+.... ..+.+.+.+.+.|+.....
T Consensus 118 ~~-----~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 118 MG-----FLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp GG-----GSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEE
T ss_pred Hh-----hcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeee
Confidence 11 10001125899999999999999999754332 2456777888888865543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=110.51 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=79.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|.+++.++++ +..+++|+|+++.+++. ++..+++|++++++|+.++... .++++||.|++
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~fD~i~~ 119 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA---GTTSPVDLVLA 119 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH---CCSSCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh---ccCCCccEEEE
Confidence 4678999999999999988875 45689999987655544 4455778999999999887432 24689999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHh--cccCCeEEEEEeC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD 240 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~r--vLkpGG~l~~~tD 240 (311)
+.|-.+ .. -....+++++.+ +|+|||.+++.+.
T Consensus 120 ~~p~~~--~~-----~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 120 DPPYNV--DS-----ADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp CCCTTS--CH-----HHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred CCCCCc--ch-----hhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 744221 10 012578899988 9999999999764
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=116.73 Aligned_cols=100 Identities=20% Similarity=0.196 Sum_probs=78.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHH----HHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~----~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+.+|||||||+|..+..+|+..| +.+++|+|+++.+++ ++++.++. |+.++++|+.+.++.. ...++||.|+
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~--~~~~~fD~V~ 141 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL--GECPAFDLIF 141 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC--CSCCCCSEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc--CCCCCeEEEE
Confidence 57999999999999999999987 789999998765544 44455765 7999999998864431 1245899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+..+.+ ..+.+++++.++|+|||.+++.
T Consensus 142 ~d~~~~-----------~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 142 IDADKP-----------NNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp ECSCGG-----------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred ECCchH-----------HHHHHHHHHHHhcCCCeEEEEe
Confidence 864311 1258999999999999999874
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-12 Score=114.66 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=91.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.+++.+|++.+. +++|+|+++.+++.+ ..+++. ++.++++|+.++.. .+ ++++||.|+
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~-~~--~~~~fD~Ii 124 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD-LI--PKERADIVT 124 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG-TS--CTTCEEEEE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh-hh--ccCCccEEE
Confidence 3679999999999999999998764 999999876555444 445665 69999999998732 12 478999999
Q ss_pred EeCCCCCCCC-chh------hh-------hhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 200 IQCPNPDFNR-PEH------RW-------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 200 i~fpdP~~k~-~h~------kr-------Rl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
++- |++.. .++ .+ ......+++.+.++|+|||.+++...... ...+.+.+.+.++...
T Consensus 125 ~np--Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 125 CNP--PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER-LLDIIDIMRKYRLEPK 196 (259)
T ss_dssp ECC--CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT-HHHHHHHHHHTTEEEE
T ss_pred ECC--CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH-HHHHHHHHHHCCCceE
Confidence 873 32211 000 00 11225799999999999999999775543 3456667777776543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=114.29 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=77.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHH----HHHHHHcCCC--cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHC----RDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a----~~~a~~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.++|||||||+|..++.+|+..| +.+++++|+++.+ .++++..++. |++++++|+.+.++. ..+++||.|
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~---~~~~~fD~V 133 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSR---LANDSYQLV 133 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGG---SCTTCEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHH---hcCCCcCeE
Confidence 45899999999999999999865 7899999986554 4444556765 799999999887542 136899999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++..+.+ ....+++++.++|+|||.+++
T Consensus 134 ~~d~~~~-----------~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 134 FGQVSPM-----------DLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp EECCCTT-----------THHHHHHHHHHHEEEEEEEEE
T ss_pred EEcCcHH-----------HHHHHHHHHHHHcCCCcEEEE
Confidence 8763211 124799999999999999997
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-12 Score=112.44 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=78.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHH----HHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~----~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+.+|||||||+|.++..+|+..| +.+++|+|+++.+++ +++..++.+ +.++++|+.+.++.......++||.|+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 57899999999999999999988 789999998665444 444557754 999999998765432211126799998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+..+.+ ..+.+++++.++|+|||.+++.
T Consensus 139 ~d~~~~-----------~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 139 IDADKQ-----------NNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp ECSCGG-----------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred EcCCcH-----------HHHHHHHHHHHhcCCCcEEEEe
Confidence 864321 1258999999999999988874
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=120.08 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=94.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------C--CCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|||||||+|.++..+++..|..+++++|+++.+++.++++ + .++++++++|+.+.+.. .+++||
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD 191 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----VTNTYD 191 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----CCSCEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh----cCCCce
Confidence 35789999999999999999887888999999988887777643 1 25799999999876432 367899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~~ 255 (311)
.|+++.++|+. +...+..++++++++++|+|||.+++.+.+. .....+.+.+.+.
T Consensus 192 vIi~d~~~p~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 250 (321)
T 2pt6_A 192 VIIVDSSDPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL 250 (321)
T ss_dssp EEEEECCCSSS----GGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT
T ss_pred EEEECCcCCCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence 99999888762 2223444799999999999999999976442 3344555566554
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=121.33 Aligned_cols=104 Identities=12% Similarity=0.026 Sum_probs=79.2
Q ss_pred CCCeEEEEeccccHHHHHHH-hhCCCCeEEEEchHHHHHHHHHH----cCCC-cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLELVTHCRDSLQL----SGIT-NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA-~~~p~~~vvGiDi~~~a~~~a~~----~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||||||+|.++..+| ...|+.+++|+|+++.+++.+++ .+.. ++.++++|+.++ +.+ ++||.|
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~-~~fD~v 191 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-----DTR-EGYDLL 191 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-----CCC-SCEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-----Ccc-CCeEEE
Confidence 46789999999999999997 56889999999988766666543 3444 499999999886 334 899999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+++.+-.+..+.. ....++++++++|||||.+++.+
T Consensus 192 ~~~~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 192 TSNGLNIYEPDDA-----RVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp ECCSSGGGCCCHH-----HHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECChhhhcCCHH-----HHHHHHHHHHHhcCCCeEEEEEe
Confidence 8764322211111 11368999999999999999864
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=113.56 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=78.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC-C
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC-P 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f-p 203 (311)
++.+|||||||+|.++..+++..+ +++|+|+++.+++.+++. .+++.++++|+.++ +. ++++|.|+..+ .
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~-~~~~~~~~~d~~~~-----~~-~~~~D~v~~~~~~ 110 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKR-LPDATLHQGDMRDF-----RL-GRKFSAVVSMFSS 110 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHH-CTTCEEEECCTTTC-----CC-SSCEEEEEECTTG
T ss_pred CCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHh-CCCCEEEECCHHHc-----cc-CCCCcEEEEcCch
Confidence 467999999999999999999865 899999999888888665 36799999999876 32 67899998543 2
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
-.+..... ....++++++++|+|||.+++.+
T Consensus 111 ~~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 111 VGYLKTTE-----ELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp GGGCCSHH-----HHHHHHHHHHHTEEEEEEEEECC
T ss_pred HhhcCCHH-----HHHHHHHHHHHhcCCCeEEEEEe
Confidence 11111100 12589999999999999999864
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=119.18 Aligned_cols=115 Identities=7% Similarity=0.054 Sum_probs=81.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
.+.+|||||||+|.++..+++. +.+++|+|+++.+++.++++ ...++.+..+|+.++...+ ..+++||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~fD 132 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV--PAGDGFD 132 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS--CCTTCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc--ccCCCeE
Confidence 3578999999999999999998 45999999988777766432 1247899999998873222 3578999
Q ss_pred EEEEe-CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 197 LVSIQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 197 ~V~i~-fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
.|++. ..-.+....... .-....++++++++|||||.+++.+.+...
T Consensus 133 ~V~~~g~~l~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGD-QSEHRLALKNIASMVRPGGLLVIDHRNYDY 180 (293)
T ss_dssp EEEECTTCGGGSCCSSSS-SHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred EEEEcChHHhhcCccccC-HHHHHHHHHHHHHHcCCCeEEEEEeCCHHH
Confidence 99885 221111110000 001258999999999999999998765443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=117.27 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=83.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+++..|+.+++|+|+++.+++.+++.. .++.++.+|+.++ +..+++||.|+..+.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~- 157 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-PQVTFCVASSHRL-----PFSDTSMDAIIRIYA- 157 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-TTSEEEECCTTSC-----SBCTTCEEEEEEESC-
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-CCcEEEEcchhhC-----CCCCCceeEEEEeCC-
Confidence 467899999999999999999988889999999999888887664 6789999999876 446789999998754
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
+ .+++++.++|+|||.+++.+.....
T Consensus 158 ~--------------~~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 158 P--------------CKAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp C--------------CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred h--------------hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence 1 3588999999999999998755443
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-12 Score=117.22 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=79.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+++.+ +.+++|+|+++.+++.+ ...++ +++.++++|+.++ |+++++||.|+
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~ 155 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-----PCEDNSYDFIW 155 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-----SSCTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-----CCCCCCEeEEE
Confidence 46799999999999999999986 46999999876655544 34565 5799999999876 44688999999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-.+..+ ...++++++++|||||.+++.+
T Consensus 156 ~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 156 SQDAFLHSPD--------KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp EESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecchhhhcCC--------HHHHHHHHHHHcCCCeEEEEEE
Confidence 8754332211 1589999999999999999864
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=114.42 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=91.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-----CCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----GITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-----~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
..+|||||||+|.++..+++ +..+++|+|+++.+++.++++ ...|+.|+++|+.++ + ++.+||.|+.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~v~~ 138 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW-----R-PTELFDLIFD 138 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTC-----C-CSSCEEEEEE
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcC-----C-CCCCeeEEEE
Confidence 45899999999999999987 467899999988777776543 125799999999876 2 3669999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH----------HHHHHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----------EVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----------~~~~~~~~~l~~~g~~~~~~ 262 (311)
...-.+.... ....++++++++|+|||.+++.+-.. .-.+++.+.+.+.|+....+
T Consensus 139 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 139 YVFFCAIEPE------MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp ESSTTTSCGG------GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred ChhhhcCCHH------HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 7554332211 12589999999999999999854211 11456777888888876554
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-12 Score=115.89 Aligned_cols=123 Identities=10% Similarity=0.121 Sum_probs=94.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------CC--CcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------GI--TNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|||||||+|.++..+++..+..+++++|+++.+++.++++ ++ ++++++.+|+.+.+.. .++++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~----~~~~fD 150 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----SENQYD 150 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----CCSCEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----CCCCee
Confidence 35789999999999999999887778999999987777666542 22 5799999999886432 367899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
.|++..++|+.... .+...+++++++++|+|||.+++.+.+ ......+.+.+++.
T Consensus 151 ~Ii~d~~~~~~~~~----~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 209 (275)
T 1iy9_A 151 VIMVDSTEPVGPAV----NLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI 209 (275)
T ss_dssp EEEESCSSCCSCCC----CCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCcch----hhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh
Confidence 99998887753211 133468999999999999999998644 33455666666665
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-12 Score=114.68 Aligned_cols=127 Identities=12% Similarity=0.088 Sum_probs=89.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH-------cCCC-cEEEEEccccchhhhhh--ccCCCc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-------SGIT-NGYFIATNATSTFRSIV--ASYPGK 194 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~-------~~~~-Nv~f~~~Da~~ll~~~~--~~~~~s 194 (311)
.+.+|||||||+|.+++.+|++.|..+++|+|+++.+++.+++ +++. ++.++++|+.+...... +..+++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 3568999999999999999999998999999998777766654 3343 59999999988743210 124689
Q ss_pred EeEEEEeCCCCCCCCc-----hhhh-------hhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 195 LILVSIQCPNPDFNRP-----EHRW-------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 195 ~D~V~i~fpdP~~k~~-----h~kr-------Rl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
||.|+++- |++... ...+ ......+++.+.++|+|||.|++...... ..++.+.+.+
T Consensus 116 fD~Vv~nP--Py~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~l~~ 184 (260)
T 2ozv_A 116 FHHVIMNP--PYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS-VAEIIAACGS 184 (260)
T ss_dssp EEEEEECC--CC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG-HHHHHHHHTT
T ss_pred cCEEEECC--CCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH-HHHHHHHHHh
Confidence 99999983 332210 0000 11136899999999999999999876654 3445555554
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-12 Score=115.92 Aligned_cols=121 Identities=11% Similarity=0.075 Sum_probs=90.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-----C---------CCcEEEEEccccchhhhhhcc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----G---------ITNGYFIATNATSTFRSIVAS 190 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-----~---------~~Nv~f~~~Da~~ll~~~~~~ 190 (311)
...+|||||||+|.++..+++. |..+++++|+++.+++.++++ + .++++++.+|+.+.+. .
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~----~ 149 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK----N 149 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH----H
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhc----c
Confidence 3578999999999999999998 888999999987777666543 2 3579999999987643 2
Q ss_pred CCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 191 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 191 ~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
+++||.|++..++|+.. ...+...+++++++++|+|||.+++.+.+ ......+.+.+.+.
T Consensus 150 -~~~fD~Ii~d~~~~~~~----~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 213 (281)
T 1mjf_A 150 -NRGFDVIIADSTDPVGP----AKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV 213 (281)
T ss_dssp -CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH
T ss_pred -cCCeeEEEECCCCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence 57899999998887521 12233478999999999999999997533 34445555555554
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-12 Score=109.99 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=78.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++. ..+++|+|+++.+++.+++ .+. ++.++++|+.++ +. ++++|.|++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~~-~~~fD~v~~ 107 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNL-----NI-NRKFDLITC 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGC-----CC-SCCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccC-----Cc-cCCceEEEE
Confidence 4579999999999999999988 4689999987766655543 343 799999999876 32 378999998
Q ss_pred eC-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 201 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 201 ~f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
.. .-++..... ....++++++++|+|||.+++.+.+.
T Consensus 108 ~~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 108 CLDSTNYIIDSD-----DLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp CTTGGGGCCSHH-----HHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cCccccccCCHH-----HHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 75 333321111 12589999999999999999976543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=118.25 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=78.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+++ |+.+++|+|+++.+++.++... |+.|+++|+.++ +.++++||.|++...-
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~--~~~~~~~d~~~~-----~~~~~~fD~v~~~~~l 104 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP--QVEWFTGYAENL-----ALPDKSVDGVISILAI 104 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT--TEEEECCCTTSC-----CSCTTCBSEEEEESCG
T ss_pred CCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc--CCEEEECchhhC-----CCCCCCEeEEEEcchH
Confidence 468999999999999999997 5789999999998887664433 999999999876 4467899999988643
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.+..+ ...++++++++|| ||.+++.+
T Consensus 105 ~~~~~--------~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 105 HHFSH--------LEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp GGCSS--------HHHHHHHHHHHBC-SSCEEEEE
T ss_pred hhccC--------HHHHHHHHHHHhC-CcEEEEEE
Confidence 32211 1589999999999 99777654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=108.44 Aligned_cols=96 Identities=13% Similarity=0.252 Sum_probs=79.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+++... +++|+|+++.+++.+++. .+|+.++.+| . +.+++++|.|++...-
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-~~~v~~~~~d---~-----~~~~~~~D~v~~~~~l 85 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK-FDSVITLSDP---K-----EIPDNSVDFILFANSF 85 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH-CTTSEEESSG---G-----GSCTTCEEEEEEESCS
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh-CCCcEEEeCC---C-----CCCCCceEEEEEccch
Confidence 456899999999999999999863 999999999888888766 5789999999 2 3357899999988654
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.+..+ ...+++++.++|+|||.+++.+
T Consensus 86 ~~~~~--------~~~~l~~~~~~L~pgG~l~~~~ 112 (170)
T 3i9f_A 86 HDMDD--------KQHVISEVKRILKDDGRVIIID 112 (170)
T ss_dssp TTCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccC--------HHHHHHHHHHhcCCCCEEEEEE
Confidence 44322 1489999999999999999863
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.8e-12 Score=117.37 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=87.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------C--CCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|||||||+|.++..++++.|..+++++|+++.+++.++++ + .++++++.+|+.+.++ ..+++||
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~----~~~~~fD 170 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK----QNQDAFD 170 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----TCSSCEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh----hCCCCce
Confidence 35789999999999999999987888999999987766666532 2 3689999999987643 2468899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHh
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLE 254 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~ 254 (311)
.|++..++|+... ..+...+++++++++|+|||.+++.+.+ ......+.+.+.+
T Consensus 171 ~Ii~d~~~~~~~~----~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 228 (304)
T 2o07_A 171 VIITDSSDPMGPA----ESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQS 228 (304)
T ss_dssp EEEEECC---------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCcc----hhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 9999988775211 1133458999999999999999987622 2334445454544
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=118.06 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=80.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHHHHHHHHHc--C-CCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLS--G-ITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~a~~~a~~~--~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++.+|+ .+++|+|+++.+++.+++. . ..|+.++++|+.++ +. +++||.|++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-----~~-~~~fD~v~~ 95 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-----EL-NDKYDIAIC 95 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC-----CC-SSCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc-----Cc-CCCeeEEEE
Confidence 4679999999999999999999884 8999999987776665432 1 23899999999875 32 579999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
...-.+..+ .+.++++++++|||||.+++..-+
T Consensus 96 ~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 96 HAFLLHMTT--------PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp ESCGGGCSS--------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CChhhcCCC--------HHHHHHHHHHHcCCCCEEEEEecc
Confidence 754222211 148999999999999999986543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=111.40 Aligned_cols=123 Identities=14% Similarity=0.175 Sum_probs=82.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC--CCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh------------------
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK--DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF------------------ 184 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p--~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll------------------ 184 (311)
++.+|||||||+|.++..++++.| +.+++|+|+++. ...+++.++++|+.+..
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~-------~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM-------DPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC-------CCCTTCEEEECCTTTTSSCCC-----------CHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc-------CCCCCceEEEccccchhhhhhccccccccccchhh
Confidence 357899999999999999999987 689999999873 13468999999998752
Q ss_pred -hhhh-ccCCCcEeEEEEeCCCCCCCC--chhhh-hhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 185 -RSIV-ASYPGKLILVSIQCPNPDFNR--PEHRW-RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 185 -~~~~-~~~~~s~D~V~i~fpdP~~k~--~h~kr-Rl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
.... ..++.+||.|+.+.+.++... ..+.+ ......++++++++|+|||.|++.+-.......+.+.+..
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~ 169 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG 169 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH
Confidence 0000 014678999998765443211 11111 1112458999999999999999865322223344444544
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-12 Score=117.94 Aligned_cols=123 Identities=14% Similarity=0.026 Sum_probs=92.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..++++. +.+++|+|+++.+++.+ ...++. |+.++++|+.++ +.++++||.|+
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~ 190 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-----PFDKGAVTASW 190 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CCCTTCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-----CCCCCCEeEEE
Confidence 46799999999999999999985 57999999876555444 445664 799999999876 44678999999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH--------H--------------HHHHHHHHHHhcCC
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------E--------------VMLRMKQQFLEYGK 257 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~--------~--------------~~~~~~~~l~~~g~ 257 (311)
....-.+.. ...+++++.++|||||.+++.+... . -.+.+.+.+++.|+
T Consensus 191 ~~~~l~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf 261 (312)
T 3vc1_A 191 NNESTMYVD---------LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRL 261 (312)
T ss_dssp EESCGGGSC---------HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTE
T ss_pred ECCchhhCC---------HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCC
Confidence 875433221 2589999999999999999875210 0 02455677788887
Q ss_pred Cceee
Q 021567 258 GKLVL 262 (311)
Q Consensus 258 ~~~~~ 262 (311)
....+
T Consensus 262 ~~~~~ 266 (312)
T 3vc1_A 262 VPHTI 266 (312)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65544
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-12 Score=116.05 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=94.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC--------CCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--------ITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~--------~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|||||||+|..+..+++..|..+++++|+++.+++.+++.- .++++++.+|+.+.+.. .++++|
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD 153 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----VTNTYD 153 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----CCSCEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh----CCCCce
Confidence 357899999999999999998877889999999888777776431 35899999999886432 367899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
.|++..++|+. ....+.+.++++.++++|+|||.+++.+.+ ......+.+.+++.
T Consensus 154 ~Ii~d~~~~~~----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 212 (283)
T 2i7c_A 154 VIIVDSSDPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL 212 (283)
T ss_dssp EEEEECCCTTT----GGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCC----cchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH
Confidence 99998888762 222344579999999999999999998643 23344555555554
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-12 Score=116.23 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=93.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------C---CCcEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G---ITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~---~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
...+|||||||+|.++..+++..|..+++++|+++.+++.++++ + .++++++.+|+.+.++. .+++|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~f 152 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----TEERY 152 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----CCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh----cCCCc
Confidence 35789999999999999999987788999999987766665432 2 36899999999886432 46789
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-----HHHHHHHHHHHHhc
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEY 255 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-----~~~~~~~~~~l~~~ 255 (311)
|.|++..++|+... .....+...+++++++++|+|||.+++.+.. ......+.+.+.+.
T Consensus 153 D~Ii~d~~~~~~~~-~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~ 216 (314)
T 1uir_A 153 DVVIIDLTDPVGED-NPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA 216 (314)
T ss_dssp EEEEEECCCCBSTT-CGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT
T ss_pred cEEEECCCCccccc-CcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH
Confidence 99999988876110 1122344579999999999999999987532 23455566666654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.2e-12 Score=113.75 Aligned_cols=118 Identities=16% Similarity=0.260 Sum_probs=91.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|.+++.+++..+ +++|+|+++. +.+++..++.. +.+.++|+.+. + +++++|.|+.
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~--~~~~fD~Vv~ 190 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L--PFGPFDLLVA 190 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G--GGCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C--cCCCCCEEEE
Confidence 467999999999999999998754 9999997654 44555555665 89999998764 2 2568999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+.+. ++ ...+++++.++|+|||.+++........+.+.+.+++.|+.....
T Consensus 191 n~~~------~~-----~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~ 241 (254)
T 2nxc_A 191 NLYA------EL-----HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp ECCH------HH-----HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred CCcH------HH-----HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence 8531 11 258899999999999999997655556778888899999876544
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-12 Score=110.32 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=77.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHH----HHHcCCC-cEEEEEccccchhhhhhc-cCCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDS----LQLSGIT-NGYFIATNATSTFRSIVA-SYPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~----a~~~~~~-Nv~f~~~Da~~ll~~~~~-~~~~s~D~V 198 (311)
+.+|||||||+|.++..+|+..| +.+++|+|+++.+++. ++..++. ++.++++|+.+.++.... ...++||.|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 56899999999999999999987 7899999987655444 4455765 499999999876543210 011789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++..+. .....+++++.++|+|||.+++.
T Consensus 145 ~~~~~~-----------~~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 145 YIDADK-----------ANTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp EECSCG-----------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCH-----------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 875321 11257999999999999999884
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.7e-12 Score=115.51 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=78.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..++++++ .+++|+|+++.+++.+ ...++. ++.++++|+.++ +++||.|+
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~fD~v~ 142 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--------DEPVDRIV 142 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--------CCCCSEEE
T ss_pred CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--------CCCccEEE
Confidence 467999999999999999999876 8999999876655544 445665 899999998764 67899998
Q ss_pred EeC-----CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQC-----PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~f-----pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.. |||+..... -..+.+++++.++|||||.+++.+
T Consensus 143 ~~~~~~~~~d~~~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 143 SLGAFEHFADGAGDAGF----ERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp EESCGGGTTCCSSCCCT----THHHHHHHHHHHSSCTTCEEEEEE
T ss_pred EcchHHhcCccccccch----hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 763 444210000 012589999999999999999864
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.1e-12 Score=111.04 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=77.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++. +.+++|+|+++.+++.+++ .+. ++.++++|+.++ + .++++|.|++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~-----~-~~~~fD~v~~ 111 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEI-----A-FKNEFDAVTM 111 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGC-----C-CCSCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhc-----c-cCCCccEEEE
Confidence 4579999999999999999987 5799999987766665543 343 799999999876 2 2468999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
.+....... ......++++++++|+|||.+++.+.+
T Consensus 112 ~~~~~~~~~-----~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 112 FFSTIMYFD-----EEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp CSSGGGGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCchhcCC-----HHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 654321111 011258899999999999999986543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=106.83 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=87.6
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh-----hhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF-----RSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll-----~~~~~~~~~s~D~V 198 (311)
++.+|||+|||+|.++..+++. .|+.+++|+|+++ +.+ ..++.++++|+.+.. ...+ ++++||.|
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~------~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~D~i 92 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP------IVGVDFLQGDFRDELVMKALLERV--GDSKVQVV 92 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC------CTTEEEEESCTTSHHHHHHHHHHH--TTCCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc------cCcEEEEEcccccchhhhhhhccC--CCCceeEE
Confidence 4679999999999999999998 4778999999987 432 368999999998751 1112 46899999
Q ss_pred EEeCCCCCCCCchhhh---hhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhc
Q 021567 199 SIQCPNPDFNRPEHRW---RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255 (311)
Q Consensus 199 ~i~fpdP~~k~~h~kr---Rl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~ 255 (311)
+.+.|..+........ ......+++++.++|+|||.+++.+..........+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~ 152 (180)
T 1ej0_A 93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL 152 (180)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH
T ss_pred EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh
Confidence 9986655543321111 11125899999999999999999765444445555556553
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=112.66 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=77.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.++..+++. .+++|+|+++.+++.+++ .+ .++.++++|+.++ +. ++++|.|++.
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~~-~~~fD~v~~~ 103 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMREL-----EL-PEPVDAITIL 103 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGC-----CC-SSCEEEEEEC
T ss_pred CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhc-----CC-CCCcCEEEEe
Confidence 578999999999999999987 699999998776666543 23 5799999998876 32 4789999886
Q ss_pred C-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH
Q 021567 202 C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 243 (311)
Q Consensus 202 f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~ 243 (311)
+ +-.+..... ....++++++++|+|||.+++.+.+..
T Consensus 104 ~~~~~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~ 141 (243)
T 3d2l_A 104 CDSLNYLQTEA-----DVKQTFDSAARLLTDGGKLLFDVHSPY 141 (243)
T ss_dssp TTGGGGCCSHH-----HHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred CCchhhcCCHH-----HHHHHHHHHHHhcCCCeEEEEEcCCHH
Confidence 4 222211111 125889999999999999999776543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-11 Score=111.59 Aligned_cols=123 Identities=12% Similarity=0.114 Sum_probs=86.7
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|.++..+|+. .|+..|+|+|+++.+++ .+++ ..|+.++++|+..... +....++||.|+
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~~~--~~~~~~~~D~I~ 151 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFPQS--YKSVVENVDVLY 151 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCGGG--TTTTCCCEEEEE
T ss_pred CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccchh--hhccccceEEEE
Confidence 4689999999999999999987 56889999999876543 3332 3699999999986521 111246899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc---------HHHHHHHHHHHHhcCCCcee
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---------EEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~---------~~~~~~~~~~l~~~g~~~~~ 261 (311)
++.+.|+ . ...+++.+.+.|||||.|++..-. ++.++...+.++++|+....
T Consensus 152 ~d~a~~~-----~-----~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~ 212 (232)
T 3id6_C 152 VDIAQPD-----Q-----TDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQ 212 (232)
T ss_dssp ECCCCTT-----H-----HHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEE
T ss_pred ecCCChh-----H-----HHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 9877653 1 123455666799999999986311 12234566677777765443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-12 Score=116.15 Aligned_cols=113 Identities=15% Similarity=0.208 Sum_probs=86.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|.+++.+|+..+..+++|+|+++.+++ +++.++++|+.++++|+.+. + .++.+|.|++
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~-----~~~~~D~Vi~ 192 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-E-----LKDVADRVIM 192 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-C-----CTTCEEEEEE
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-C-----ccCCceEEEE
Confidence 467999999999999999999987889999998765554 44556788999999999876 2 1568999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH-----HHHHHHHHHHHhc
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEY 255 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~-----~~~~~~~~~l~~~ 255 (311)
+.|. . ..+++.++.+.|+|||.+++.+... +......+.+.+.
T Consensus 193 d~p~----~--------~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~ 240 (272)
T 3a27_A 193 GYVH----K--------THKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEK 240 (272)
T ss_dssp CCCS----S--------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHH
T ss_pred CCcc----c--------HHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHH
Confidence 8542 1 1368899999999999999875432 3444555555553
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.33 E-value=9.6e-12 Score=107.21 Aligned_cols=96 Identities=10% Similarity=0.034 Sum_probs=75.7
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+|||||||+|.++..+++. +.+++|+|+++.+++.+++ .+. ++.++++|+.++ +.+++++|.|++.+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~~~~~~fD~v~~~~~ 103 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADF-----DIVADAWEGIVSIFC 103 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTB-----SCCTTTCSEEEEECC
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhc-----CCCcCCccEEEEEhh
Confidence 9999999999999999987 5699999988766665543 344 899999999876 335789999988753
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.- . . .....+++++.++|+|||.+++.+
T Consensus 104 ~~---~--~---~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 104 HL---P--S---SLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp CC---C--H---HHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred cC---C--H---HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 11 0 0 112589999999999999999975
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-12 Score=110.32 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=88.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
+.+|||||||+|.++..+++. +|+|+++.+++.++++ ++.++++|+.++ +.+++++|.|++...-.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~---~~~~~~~d~~~~-----~~~~~~fD~v~~~~~l~ 113 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR---GVFVLKGTAENL-----PLKDESFDFALMVTTIC 113 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT---TCEEEECBTTBC-----CSCTTCEEEEEEESCGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc---CCEEEEcccccC-----CCCCCCeeEEEEcchHh
Confidence 568999999999999999865 9999999998888766 789999998876 44578999999875422
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH-----------------------HHHHHHHHHHhcCCCceee
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----------------------VMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~-----------------------~~~~~~~~l~~~g~~~~~~ 262 (311)
+..+ ...+++++.++|+|||.+++.+.+.. -.+.+.+.+++.|+....+
T Consensus 114 ~~~~--------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 114 FVDD--------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp GSSC--------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred hccC--------HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 2111 14899999999999999999642210 1245666777788776655
Q ss_pred ecc
Q 021567 263 VQD 265 (311)
Q Consensus 263 ~~d 265 (311)
...
T Consensus 186 ~~~ 188 (219)
T 1vlm_A 186 VQT 188 (219)
T ss_dssp EEE
T ss_pred ecc
Confidence 443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-12 Score=110.77 Aligned_cols=100 Identities=12% Similarity=0.144 Sum_probs=79.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+.+|||||||+|.++..+|+..|+.+++|+|+++.+++.+ ...+.. ++.++++|+.+.++... .++.||.|++
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~fD~I~~ 132 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE--LYPLFDVLFI 132 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT--TSCCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc--cCCCccEEEE
Confidence 5789999999999999999999989999999876555544 344664 69999999988643211 2578999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..+.+ ....+++.+.++|+|||.+++.
T Consensus 133 ~~~~~-----------~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 133 DAAKG-----------QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp EGGGS-----------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCHH-----------HHHHHHHHHHHHcCCCeEEEEE
Confidence 86532 1258999999999999999885
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-12 Score=114.38 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=80.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhcc-CCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVAS-YPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V 198 (311)
++.+|||||||+|.++..+++. +..+++|+|+++.+++.+++ .+. .++.++++|+.+. +. .+++||.|
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~~fD~v 137 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-----HMDLGKEFDVI 137 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-----CCCCSSCEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-----ccCCCCCcCEE
Confidence 4679999999999999998886 45699999998776665543 333 4799999999876 33 47899999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
++.+.-.+.- .+ . .....++++++++|+|||.+++.+.+.
T Consensus 138 ~~~~~l~~~~-~~-~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 138 SSQFSFHYAF-ST-S--ESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EEESCGGGGG-SS-H--HHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EECchhhhhc-CC-H--HHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 9885422100 00 0 112589999999999999999987554
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-12 Score=117.64 Aligned_cols=110 Identities=18% Similarity=0.144 Sum_probs=76.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCC------cEEEEEccc------cchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGIT------NGYFIATNA------TSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~------Nv~f~~~Da------~~ll~~~~ 188 (311)
.+.+|||||||+|..+..+++.. ..+|+|+|+++.+++.|++ .+.. ++.|.++|+ .++ ..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l-~~-- 123 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSV-RE-- 123 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHH-HT--
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhh-hc--
Confidence 36789999999998777776643 4689999998777766653 2322 367888887 333 21
Q ss_pred ccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH
Q 021567 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 243 (311)
Q Consensus 189 ~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~ 243 (311)
+.++++||.|++.+.-.+.-...+. ..++++++++|||||.|++.|-+..
T Consensus 124 ~~~~~~FD~V~~~~~lhy~~~~~~~-----~~~l~~~~r~LkpGG~~i~~~~~~~ 173 (302)
T 2vdw_A 124 VFYFGKFNIIDWQFAIHYSFHPRHY-----ATVMNNLSELTASGGKVLITTMDGD 173 (302)
T ss_dssp TCCSSCEEEEEEESCGGGTCSTTTH-----HHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred cccCCCeeEEEECchHHHhCCHHHH-----HHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 1247899999987643221111111 4899999999999999999886544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-12 Score=111.70 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=79.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-CCCcEEEEEccccchhhh-hhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATSTFRS-IVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~~~Nv~f~~~Da~~ll~~-~~~~~~~s~D~V~i~f 202 (311)
.+.+|||||||+|.++..+++..+ +++|+|+++.+++.++++ ...|+.++++|+.++... .++ ....+|.|++..
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIH-SEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHH-HHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccc-cccCccEEEEcc
Confidence 457899999999999999999976 899999999888888654 345899999999886211 110 012488998876
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.-.+.... ....++++++++|||||.+++..
T Consensus 133 ~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 133 GFHHIPVE------KRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp SSTTSCGG------GHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhhcCCHH------HHHHHHHHHHHHcCCCCEEEEEe
Confidence 54443211 12589999999999999987754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=116.97 Aligned_cols=112 Identities=14% Similarity=0.083 Sum_probs=82.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-----------CCCcEEEEEccccchh-hhhhccCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----------GITNGYFIATNATSTF-RSIVASYP 192 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-----------~~~Nv~f~~~Da~~ll-~~~~~~~~ 192 (311)
...+|||||||+|.++..+++. +..+++|+|+++.+++.++++ +..++.++++|+.++. ...++.++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 3578999999999999999984 577999999987766665432 3458999999998761 01122235
Q ss_pred CcEeEEEEeCCCCCC-CCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 193 GKLILVSIQCPNPDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 193 ~s~D~V~i~fpdP~~-k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
++||.|++++.-.|. .... ....++++++++|+|||.+++.+-+.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~-----~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYE-----QADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHH-----HHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCEEEEEEecchhhccCCHH-----HHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 699999998764442 1100 11489999999999999999987554
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-12 Score=116.28 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=73.8
Q ss_pred CCeEEEEeccccHHHH----HHHhhCCCCeE--EEEchHHHHHHHHHHc-----CCCcEEE--EEccccchhhhh-hccC
Q 021567 126 QPLVVDIGSGNGLFLL----GMARKRKDLNF--LGLELVTHCRDSLQLS-----GITNGYF--IATNATSTFRSI-VASY 191 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~----~lA~~~p~~~v--vGiDi~~~a~~~a~~~-----~~~Nv~f--~~~Da~~ll~~~-~~~~ 191 (311)
+.+|||||||+|.++. .++.++|+..+ +|+|.++.+++.++++ +++|+.+ ..++++++.... .+++
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 4689999999998655 44556677754 9999887776665432 4567655 466665542110 0135
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+++||.|++.+.-.|..+. ..+|++++++|||||.+++..
T Consensus 133 ~~~fD~V~~~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYVKDI--------PATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp CCCEEEEEEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceeEEEEeeeeeecCCH--------HHHHHHHHHHcCCCcEEEEEE
Confidence 7899999988654443221 479999999999999999864
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8e-12 Score=110.09 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=78.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++.+|||+|||+|.++..+++.. |..+++|+|+++.+++.+.+ ...+|+.++++|+.+... +...++++|.|++.
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE--YRALVPKVDVIFED 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG--GTTTCCCEEEEEEC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcch--hhcccCCceEEEEC
Confidence 46789999999999999999884 66899999998866555432 123789999999987421 11124689999988
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.+.|+ ....+++++.++|||||.+++..
T Consensus 151 ~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 151 VAQPT----------QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CCSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCHh----------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 76543 11356999999999999999863
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.1e-12 Score=109.18 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=77.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.++..+++..+ +++|+|+++.+++.+++ .+ .++.++++|+.++ +.+++++|.|+++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~~~~~~~D~v~~~ 110 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKL-----SFEDKTFDYVIFI 110 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSC-----CSCTTCEEEEEEE
T ss_pred CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcC-----CCCCCcEEEEEEc
Confidence 57899999999999999999876 99999987766655543 33 6899999998875 3357899999988
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
.+-... +. .....++++++++|+|||.+++.+-+
T Consensus 111 ~~~~~~----~~--~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 111 DSIVHF----EP--LELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp SCGGGC----CH--HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CchHhC----CH--HHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 441111 10 01258999999999999999987543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=118.19 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=85.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC---cEEEEEccccchhhhhhccCCCcEeE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT---NGYFIATNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~---Nv~f~~~Da~~ll~~~~~~~~~s~D~ 197 (311)
.+.+|||+|||+|.+++.+++.+|..+++|+|+++.+++.+ +.+++. +++|+.+|+.+. + ++++||.
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~----~--~~~~fD~ 295 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG----V--EPFRFNA 295 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT----C--CTTCEEE
T ss_pred CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc----C--CCCCeeE
Confidence 34799999999999999999999999999999876655544 445544 699999998764 2 4679999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-HHHHHHHHHHH
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF 252 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~~~~~~~~~~l 252 (311)
|+++.| +.. .....+....++++++.++|+|||.+++.++. ..|...+.+.+
T Consensus 296 Ii~npp--fh~-~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~f 348 (375)
T 4dcm_A 296 VLCNPP--FHQ-QHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF 348 (375)
T ss_dssp EEECCC--C--------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHH
T ss_pred EEECCC--ccc-CcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhc
Confidence 998843 211 10111122357899999999999999997543 34555554444
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-12 Score=117.57 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=87.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------C--CCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|||||||+|.++..+++..|..+++++|+++.+++.++++ + .++++++.+|+.+.+.. .+++||
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~----~~~~fD 183 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----HKNEFD 183 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----CTTCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh----cCCCce
Confidence 35789999999999999999987889999999988877777643 2 25799999999886432 467899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
.|++..++|+.. ...+...+++++++++|+|||.+++.+.+ ......+.+.+++.
T Consensus 184 ~Ii~d~~~~~~~----~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v 242 (314)
T 2b2c_A 184 VIITDSSDPVGP----AESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI 242 (314)
T ss_dssp EEEECCC-----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCc----chhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH
Confidence 999988777521 12234469999999999999999997533 22344455555544
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=116.31 Aligned_cols=122 Identities=10% Similarity=-0.054 Sum_probs=93.1
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-C---CCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-G---ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+|||||||+|.++..+++.+|+.++++||+++.+++.+++. + .++++++.+|+.+++.. ..+++||+|++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~---~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES---FTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT---CCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh---ccCCCCCEEEECC
Confidence 389999999999999999999999999999988888877653 2 35799999999987542 2468999999987
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-H--HHHHHHHHHHHhc
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-E--EVMLRMKQQFLEY 255 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~--~~~~~~~~~l~~~ 255 (311)
.+|+... ..+...+|+++++++|+|||+|++.+.. . .+...+.+.+.+.
T Consensus 168 ~~~~~~~----~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v 219 (317)
T 3gjy_A 168 FAGAITP----QNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV 219 (317)
T ss_dssp STTSCCC----GGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCccccc----hhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH
Confidence 6664211 1244579999999999999999987532 1 2334455555543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-12 Score=110.52 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=75.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..++.. ++.+++|+|+++.+++.+++ .+ .++.++++|+.++ +.+++++|.|++
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~~~~~~fD~v~~ 95 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKL-----PFKDESMSFVYS 95 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSC-----CSCTTCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhC-----CCCCCceeEEEE
Confidence 3578999999999986555443 46799999988766665543 33 5799999999876 445789999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..+-.+.. .-....++++++++|+|||.+++.+
T Consensus 96 ~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 96 YGTIFHMR------KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp CSCGGGSC------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cChHHhCC------HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 64322210 0112589999999999999999865
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.31 E-value=9e-12 Score=105.31 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=77.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||+|||+|.++..++++ +..+++|+|+++.+++.++ ..++ +++.++++|+.+.++. .++.||.|+
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~fD~i~ 105 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC----LTGRFDLVF 105 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH----BCSCEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh----hcCCCCEEE
Confidence 4578999999999999999987 5679999998776655554 3455 3799999999885332 356799998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHH--hcccCCeEEEEEeCc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDI 241 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~--rvLkpGG~l~~~tD~ 241 (311)
++.| + +. ...+++++.+. ++|+|||.+++.+..
T Consensus 106 ~~~~--~----~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 106 LDPP--Y----AK---ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp ECCS--S----HH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred ECCC--C----Cc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 8733 2 11 12246677776 999999999998754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=112.71 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=77.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||||||+|.++..+++. +.+++|+|+++.+++.+ ...++ ++.++++|+.++ +. +++||.|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~~-~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAA-----NI-QENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGC-----CC-CSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccc-----cc-cCCccEEEE
Confidence 3578999999999999999998 56999999876655544 34566 899999999876 32 789999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.+-.+... -....+++++.++|+|||.+++.+
T Consensus 191 ~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 191 TVVFMFLNR------ERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CSSGGGSCG------GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccchhhCCH------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 754332211 112589999999999999988765
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=103.18 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=75.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||+|||+|.++..++++.+. ++|+|+++.+++.+ ...++ |+.++++|+.+.+... +..++++|.|+++
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEA-KAQGERFTVAFMA 117 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHH-HHTTCCEEEEEEC
T ss_pred CCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhh-hccCCceEEEEEC
Confidence 578999999999999999998654 99999876655544 34566 8999999998854321 1123589999987
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHH--hcccCCeEEEEEeCcH
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDIE 242 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~--rvLkpGG~l~~~tD~~ 242 (311)
.| +. ... +++++.+. ++|+|||.+++.+...
T Consensus 118 ~~--~~--~~~------~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 118 PP--YA--MDL------AALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CC--TT--SCT------THHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CC--Cc--hhH------HHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 33 21 111 25566666 9999999999987543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=108.10 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=77.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC--CcEEEEEccccchhhhhhccCCCc-EeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI--TNGYFIATNATSTFRSIVASYPGK-LILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~--~Nv~f~~~Da~~ll~~~~~~~~~s-~D~V 198 (311)
+.+|||+|||+|.+++.++.+. ...++|+|+++.+++.+ +..++ +|+.++++|+.+++.. ..+++ ||.|
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~~fD~I 129 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ---PQNQPHFDVV 129 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS---CCSSCCEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh---hccCCCCCEE
Confidence 5789999999999999987764 36899999876655544 44566 6999999999876321 13578 9999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHH--HhcccCCeEEEEEeCcH
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i--~rvLkpGG~l~~~tD~~ 242 (311)
+++.| + ... ..+.+++.+ .++|+|||.+++.+...
T Consensus 130 ~~~~~--~-~~~------~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 130 FLDPP--F-HFN------LAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EECCC--S-SSC------HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EECCC--C-CCc------cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 98744 2 111 124778888 77899999999987543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.9e-12 Score=113.81 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=79.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchH----HHHHHHHHHcCCC-cEEEEEccccchhhhhhcc-CCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~----~~a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~-~~~s~D~V 198 (311)
..+|||||||+|..++.+|+..| +.+++|+|++ +.|.++++..++. +++++++|+.+.+...... .+++||.|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 57899999999999999999876 7899999975 3466677777774 8999999998875432110 14789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++..+. . ....+++++.++|+|||.+++.
T Consensus 141 ~~d~~~-----~------~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 141 FIDADK-----T------NYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp EEESCG-----G------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCh-----H------HhHHHHHHHHHhcCCCeEEEEE
Confidence 887431 1 1257899999999999999983
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=107.05 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=76.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
..+|||||||+|..+..+++..| +.+++|+|+++.+++.+ +..++. +++++++|+.+.++ ..++ ||.|+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~-fD~v~ 131 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA----GQRD-IDILF 131 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT----TCCS-EEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc----cCCC-CCEEE
Confidence 46899999999999999999987 78999999876555544 344554 59999999987633 2346 99999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+..+.+ ..+.+++++.++|+|||.+++.
T Consensus 132 ~~~~~~-----------~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 132 MDCDVF-----------NGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp EETTTS-----------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred EcCChh-----------hhHHHHHHHHHhcCCCeEEEEE
Confidence 874321 1258999999999999999873
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=112.14 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=75.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..++++.+ .+++|+|+++.+++.+++ .++ +++.++.+|+.++ + ++||.|+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~---~~fD~v~ 134 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-----D---EPVDRIV 134 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-----C---CCCSEEE
T ss_pred CcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-----C---CCeeEEE
Confidence 467999999999999999997764 599999987766655543 354 4899999998664 2 7899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-.+.... ....++++++++|||||.+++.+
T Consensus 135 ~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 135 SIGAFEHFGHE------RYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp EESCGGGTCTT------THHHHHHHHHHHSCTTCEEEEEE
T ss_pred EeCchhhcChH------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 77432211100 11589999999999999999864
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-12 Score=109.27 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=75.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++. ..+++|+|+++.+++.+ ...+.+|+.++++|+.+... .+++||.|++
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~D~i~~ 149 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-----ARAPFDAIIV 149 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-----cCCCccEEEE
Confidence 4679999999999999999998 67999999876555544 44577899999999987521 3678999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
..+-++. .+++.++|+|||++++....
T Consensus 150 ~~~~~~~--------------~~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 150 TAAPPEI--------------PTALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SSBCSSC--------------CTHHHHTEEEEEEEEEEECS
T ss_pred ccchhhh--------------hHHHHHhcccCcEEEEEEcC
Confidence 7654432 13578999999999997654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=104.84 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=77.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||+|||+|.++..+++. +..+++|+|+++.+++.+ ...++ +|+.++++|+.+.+.. ++..+++||.|+
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~fD~i~ 121 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ-FYEEKLQFDLVL 121 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH-HHHTTCCEEEEE
T ss_pred CCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHH-HHhcCCCCCEEE
Confidence 4579999999999999999884 457999999876655544 34555 5799999999886432 222367899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHH--HhcccCCeEEEEEeCc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSDI 241 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i--~rvLkpGG~l~~~tD~ 241 (311)
++.| +. .. ..+..++.+ .++|+|||.+++.+..
T Consensus 122 ~~~~--~~-~~------~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPP--YA-KQ------EIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp ECCC--GG-GC------CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred ECCC--CC-ch------hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 8743 21 11 124566666 8999999999997643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=117.26 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=77.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+|+. +..+++|+|+++ .|.++++.+++.+ +.++++|+.++ +.++++||.|+.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~Iis 139 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-----ELPVEKVDIIIS 139 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-----CCSSSCEEEEEE
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-----cCCCCceEEEEE
Confidence 3578999999999999999987 566999999863 5555566667755 99999999887 335789999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
..+....... -..+.+++++.++|||||.+++
T Consensus 140 ~~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 140 EWMGYCLFYE-----SMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CCCBBTBTBT-----CCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccccCc-----hhHHHHHHHHHHhCCCCCEEcc
Confidence 6432211000 1225889999999999999864
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-11 Score=110.13 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=78.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHH----HHHHHHHcCC-CcEEEEEccccchhhhhhcc--CCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGI-TNGYFIATNATSTFRSIVAS--YPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~----a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~--~~~s~D~ 197 (311)
..+|||||||+|..++.+|+..| +.+++++|+++. |.++++..++ +++.++.+|+.+.++..... .+++||.
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 57899999999999999999977 789999997644 4445555666 47999999998875432110 1578999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
|++..+.+ ....+++++.++|+|||.+++.
T Consensus 160 V~~d~~~~-----------~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 160 IFVDADKD-----------NYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp EEECSCST-----------THHHHHHHHHHHBCTTCCEEEE
T ss_pred EEEcCchH-----------HHHHHHHHHHHhCCCCeEEEEe
Confidence 98863211 1258999999999999999874
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=113.16 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=76.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+++.. +.+++|+|+++.+++.+++ .++ .++.++++|+.++ +++||.|+
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~fD~v~ 160 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--------AEPVDRIV 160 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--------CCCCSEEE
T ss_pred CcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--------CCCcCEEE
Confidence 46799999999999999999886 5699999988766665543 355 4699999998765 37899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-.+.... ....+++++.++|||||.+++.+
T Consensus 161 ~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 161 SIEAFEHFGHE------NYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp EESCGGGTCGG------GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EeChHHhcCHH------HHHHHHHHHHHhcCCCcEEEEEE
Confidence 87432211100 12589999999999999999864
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-11 Score=106.44 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=81.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHH----HHHcCCC-cEEEEEccccchhhhhh-ccCCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDS----LQLSGIT-NGYFIATNATSTFRSIV-ASYPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~----a~~~~~~-Nv~f~~~Da~~ll~~~~-~~~~~s~D~V 198 (311)
..+|||||||+|.+++.+|+..+ +.+++|+|+++.+++. ++..++. +++++++|+.+.++..- ....++||.|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 57899999999999999999754 7899999986655444 4455764 59999999987644311 0012689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCC
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 257 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~ 257 (311)
++..+.. +. ....++++.+ ++|+|||.+++..-...-.....+.+.+++.
T Consensus 139 ~~d~~~~-----~~---~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~ 188 (221)
T 3u81_A 139 FLDHWKD-----RY---LPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSS 188 (221)
T ss_dssp EECSCGG-----GH---HHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTT
T ss_pred EEcCCcc-----cc---hHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCC
Confidence 8763211 11 1113567777 9999999998742111111234445555543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-11 Score=104.20 Aligned_cols=104 Identities=11% Similarity=0.077 Sum_probs=80.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+++. + .+++|+|+++.+++.+++.. ..++++|+.+.. .+.+++++|.|++...-
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~---~~~~~~d~~~~~---~~~~~~~fD~v~~~~~l 103 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL---DHVVLGDIETMD---MPYEEEQFDCVIFGDVL 103 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS---SEEEESCTTTCC---CCSCTTCEEEEEEESCG
T ss_pred CCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC---CcEEEcchhhcC---CCCCCCccCEEEECChh
Confidence 4679999999999999999988 4 89999999999888876542 378899987641 13357899999987432
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
.+..+ ...+++++.++|+|||.+++.+.+...
T Consensus 104 ~~~~~--------~~~~l~~~~~~L~~gG~l~~~~~~~~~ 135 (230)
T 3cc8_A 104 EHLFD--------PWAVIEKVKPYIKQNGVILASIPNVSH 135 (230)
T ss_dssp GGSSC--------HHHHHHHTGGGEEEEEEEEEEEECTTS
T ss_pred hhcCC--------HHHHHHHHHHHcCCCCEEEEEeCCcch
Confidence 22111 148999999999999999998755433
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=105.66 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=75.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||+|||+|.+++.++++.. .+++|+|+++.+++.+ +..+++|+.++++|+.+.+ +..+++||.|+++
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~----~~~~~~fD~V~~~ 129 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL----AQKGTPHNIVFVD 129 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH----SSCCCCEEEEEEC
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH----hhcCCCCCEEEEC
Confidence 57899999999999999887742 4899999876655544 4456679999999998753 2246789999887
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHh--cccCCeEEEEEeCc
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSDI 241 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~r--vLkpGG~l~~~tD~ 241 (311)
.| + ... ....+++.+.+ +|+|||.+++.+..
T Consensus 130 ~p--~-~~~------~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 130 PP--F-RRG------LLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CS--S-STT------THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CC--C-CCC------cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 43 2 111 12467777754 69999999998754
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.6e-11 Score=113.27 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=90.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||+|||+|.+++.+|+. ..+++|+|+++.+++. ++.++++|+.++++|+.+.+.... ..+.++|.|+++
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~-~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLE-KEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHH-hcCCCeeEEEEC
Confidence 568999999999999999998 5789999987665544 445678889999999988754321 125789999886
Q ss_pred CCCCCCCCchhhhhh--hHHHHHHHHHhcccCCeEEEEEeCcH----H-HHHHHHHHHHhcCCCc
Q 021567 202 CPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDIE----E-VMLRMKQQFLEYGKGK 259 (311)
Q Consensus 202 fpdP~~k~~h~krRl--~~~~~l~~i~rvLkpGG~l~~~tD~~----~-~~~~~~~~l~~~g~~~ 259 (311)
-| -+.+.+....+. ...+++..+.++|+|||.+++.+... + +.+.+.+.+.+.+...
T Consensus 287 pP-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 350 (382)
T 1wxx_A 287 PP-AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL 350 (382)
T ss_dssp CC-CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CC-CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 22 121111111111 12578999999999999999987542 2 3333445666666543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-12 Score=121.54 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=73.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH-----------HHcCC--CcEEEEEccccchhhhhhccC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL-----------QLSGI--TNGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a-----------~~~~~--~Nv~f~~~Da~~ll~~~~~~~ 191 (311)
++.+|||||||+|.+++.+|...+..+++|||+++.+++.+ +..|+ .++.|+++|+.++ + ++..
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l-p--~~d~ 249 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE-E--WRER 249 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH-H--HHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC-c--cccc
Confidence 57899999999999999999887766799999875444333 23354 6899999999886 2 2100
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
-..+|+|+++.+ .+. ... ...|.+++++|||||+|++
T Consensus 250 ~~~aDVVf~Nn~--~F~-pdl------~~aL~Ei~RvLKPGGrIVs 286 (438)
T 3uwp_A 250 IANTSVIFVNNF--AFG-PEV------DHQLKERFANMKEGGRIVS 286 (438)
T ss_dssp HHTCSEEEECCT--TCC-HHH------HHHHHHHHTTSCTTCEEEE
T ss_pred cCCccEEEEccc--ccC-chH------HHHHHHHHHcCCCCcEEEE
Confidence 146899998743 221 111 3567889999999999987
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=107.78 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=78.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHH----HHcCCCc-EEEEEccccchhhhhhc----------
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSL----QLSGITN-GYFIATNATSTFRSIVA---------- 189 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a----~~~~~~N-v~f~~~Da~~ll~~~~~---------- 189 (311)
+.+|||||||+|.++..+|+..| ..+++|+|+++.+++.+ +..+..+ +.++.+|+.+.++....
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 57899999999999999999987 68999999876555444 4456655 99999999875442210
Q ss_pred cCC--CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 190 SYP--GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 190 ~~~--~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+++ ++||.|++....+ ..+.+++++.++|+|||.+++.+
T Consensus 141 f~~~~~~fD~I~~~~~~~-----------~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDADKE-----------NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TCCSTTCEEEEEECSCGG-----------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccCCCCCcCEEEEeCCHH-----------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 122 7899998874311 12588999999999999999853
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=112.48 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=80.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..+..+|+..+ ...++|+|+++.+++ ++++.+++|+.++++|+.++.. .+++||.|+
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~-----~~~~fD~Il 192 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE-----LNVEFDKIL 192 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-----GCCCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc-----ccccCCEEE
Confidence 467999999999999999999864 589999998765444 4455688899999999988621 356899999
Q ss_pred EeCCC---------CCCC---Cchhhh--hhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN---------PDFN---RPEHRW--RMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd---------P~~k---~~h~kr--Rl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.|- |..+ ..+.-. .-.+..+++++.++|||||++++.|
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st 246 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 246 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 87441 1100 000000 1123689999999999999999976
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=112.53 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=74.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+|++ ...|+|+|+++.+++.++++-..+ ++++++.++........+++||.|+++..-
T Consensus 45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~--~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l 120 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR--CVTIDLLDITAEIPKELAGHFDFVLNDRLI 120 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS--CCEEEECCTTSCCCGGGTTCCSEEEEESCG
T ss_pred CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc--cceeeeeecccccccccCCCccEEEEhhhh
Confidence 4679999999999999999987 579999999999988887653333 344555443110001125789999987542
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
.++... -.+.+++++.++| |||.++++...
T Consensus 121 ~~~~~~------~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 121 NRFTTE------EARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp GGSCHH------HHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred HhCCHH------HHHHHHHHHHHhC-cCcEEEEEecc
Confidence 221111 1147899999999 99999998644
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-11 Score=110.18 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=81.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..+..+|+..++ ..++|+|++..+++ +++..+++|+.++++|+.++... +...++.||.|+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~~fD~Vl 161 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY-LLKNEIFFDKIL 161 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH-HHHTTCCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh-hhhccccCCEEE
Confidence 4679999999999999999998766 89999998765544 44456788999999999876321 111256899999
Q ss_pred EeCCCCCCC--------Cchhhhh--hhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFN--------RPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k--------~~h~krR--l~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|-.-.- ..+.... -.+.++++++.++|||||.+++.|
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st 211 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST 211 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 874321100 0000000 123689999999999999999976
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-11 Score=107.24 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=78.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHH----HHHHHcCCC-cEEEEEccccchhhhhhcc--CCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVAS--YPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~----~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~--~~~s~D~ 197 (311)
..+|||||||+|..++.+|+..| +.+++++|+++.+. +++++.++. +++++.+|+.+.++..... .+++||.
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 57899999999999999999977 78999999865544 444455765 6999999998875432111 1578999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
|++.. + .. ....+++.+.++|+|||.+++.
T Consensus 151 I~~d~---~--~~------~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 151 GFVDA---D--KP------NYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp EEECS---C--GG------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECC---c--hH------HHHHHHHHHHHhcCCCeEEEEe
Confidence 98752 2 11 2358999999999999999874
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=107.45 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=77.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhhccCC--CcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYP--GKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~~~~~--~s~D~ 197 (311)
..+|||||||+|.++..+|+..| +.+++++|+++.+++.+ +..++. ++.++.+|+.+.++.. +..+ ++||.
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l-~~~~~~~~fD~ 151 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQL-TQGKPLPEFDL 151 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH-HTSSSCCCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH-HhcCCCCCcCE
Confidence 56899999999999999999876 68999999876555444 445664 6999999998765432 2223 78999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
|++..+.+ ....+++++.++|+|||.+++.
T Consensus 152 V~~d~~~~-----------~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 152 IFIDADKR-----------NYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp EEECSCGG-----------GHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEECCCHH-----------HHHHHHHHHHHHcCCCeEEEEe
Confidence 98764311 1258999999999999999884
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=125.49 Aligned_cols=108 Identities=11% Similarity=0.079 Sum_probs=84.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHH----------cCCCcEEEEEccccchhhhhhccCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQL----------SGITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~----------~~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
.+.+|||||||+|.++..|++.. |..+++|+|+++.+++.+++ .+..|+.|+++|+.++ +..++
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-----p~~d~ 795 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-----DSRLH 795 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-----CTTSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-----CcccC
Confidence 46799999999999999999987 56799999998877776654 1567899999999886 44678
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
+||.|++...-.+... .....+++++.++|||| .+++.|.+.++
T Consensus 796 sFDlVV~~eVLeHL~d------p~l~~~L~eI~RvLKPG-~LIISTPN~ey 839 (950)
T 3htx_A 796 DVDIGTCLEVIEHMEE------DQACEFGEKVLSLFHPK-LLIVSTPNYEF 839 (950)
T ss_dssp SCCEEEEESCGGGSCH------HHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred CeeEEEEeCchhhCCh------HHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence 9999998754332211 11136899999999999 88888876654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.7e-11 Score=109.57 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=77.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+..+|||||||+|.++..+++++|+.+++|+|++ .+++.++ ..++. ++.|+.+|+.+. +. +..+|.|+
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~~D~v~ 237 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV-----DY-GNDYDLVL 237 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS-----CC-CSCEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC-----CC-CCCCcEEE
Confidence 4679999999999999999999999999999988 6655554 34554 699999998764 22 33499999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+..+-..... -....++++++++|+|||.+++..
T Consensus 238 ~~~~l~~~~~------~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 238 LPNFLHHFDV------ATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp EESCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcchhccCCH------HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 8643221110 012489999999999999988853
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-11 Score=105.03 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=77.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHH----HHHHHHHcCC-CcEEEEEccccchhhhhhccCC--CcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGI-TNGYFIATNATSTFRSIVASYP--GKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~----a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~--~s~D~ 197 (311)
..+|||||||+|.+++.+|+..| +.+++++|+++. |.++++..+. +++.++++|+.+.++... ... ++||.
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~-~~~~~~~~D~ 148 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL-AAGEAGTFDV 148 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH-HTTCTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHH-hcCCCCCccE
Confidence 57899999999999999999876 789999998654 4444445566 589999999987654321 111 68999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
|++..+.. ....+++++.++|+|||.+++.
T Consensus 149 v~~d~~~~-----------~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 149 AVVDADKE-----------NCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp EEECSCST-----------THHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCHH-----------HHHHHHHHHHHHcCCCeEEEEE
Confidence 98863311 1258899999999999999883
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=111.07 Aligned_cols=119 Identities=12% Similarity=0.141 Sum_probs=84.8
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc-EEEEEccccchhhhhhccCCCcE---eE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN-GYFIATNATSTFRSIVASYPGKL---IL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~---D~ 197 (311)
+.+|||||||+|.+++.+++. |+.+++|+|+++.+++.+ +..++.| +.|+++|+.+.+ +++| |.
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-------~~~f~~~D~ 195 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-------KEKFASIEM 195 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-------GGGTTTCCE
T ss_pred CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-------ccccCCCCE
Confidence 468999999999999999999 999999999977665555 4457765 999999998752 2467 99
Q ss_pred EEEeCCCCCCCCc--------hh-hhhhh----HHHHHHHHH-hcccCCeEEEEEeCcHHHHHHHHHHHHhc
Q 021567 198 VSIQCPNPDFNRP--------EH-RWRMV----QRSLVEAVS-DLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255 (311)
Q Consensus 198 V~i~fpdP~~k~~--------h~-krRl~----~~~~l~~i~-rvLkpGG~l~~~tD~~~~~~~~~~~l~~~ 255 (311)
|+.+- |+.... |. +..+. ...+++++. +.|+|||.+++.+... ..+.+.+.+.+.
T Consensus 196 IvsnP--Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~-q~~~v~~~~~~~ 264 (284)
T 1nv8_A 196 ILSNP--PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED-QVEELKKIVSDT 264 (284)
T ss_dssp EEECC--CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT-CHHHHTTTSTTC
T ss_pred EEEcC--CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch-HHHHHHHHHHhC
Confidence 99882 332111 00 00000 027899999 9999999999987653 445555555443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=111.38 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=75.8
Q ss_pred CCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccch--hhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~l--l~~~~~~~~~s~D~V~ 199 (311)
..+|||||||+|..+..+|+. .|+.+|+|||+++.+++.++.. .+|++++++|+.+. ++. + .+.++|.|+
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~-~~~v~~~~gD~~~~~~l~~-~--~~~~fD~I~ 157 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD-MENITLHQGDCSDLTTFEH-L--REMAHPLIF 157 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG-CTTEEEEECCSSCSGGGGG-G--SSSCSSEEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc-CCceEEEECcchhHHHHHh-h--ccCCCCEEE
Confidence 468999999999999999997 6889999999987665555422 36899999999874 221 1 234799999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHh-cccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~r-vLkpGG~l~~~ 238 (311)
+.... . ..+.+++++.+ +|||||++++.
T Consensus 158 ~d~~~-------~----~~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 158 IDNAH-------A----NTFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp EESSC-------S----SHHHHHHHHHHHTCCTTCEEEEC
T ss_pred ECCch-------H----hHHHHHHHHHHhhCCCCCEEEEE
Confidence 87531 1 12578999997 99999999984
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=106.76 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=76.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+++.. |+.+++|+|+++.+++.+ ...+.+|+.+..+|+...+ + .++++|.|+
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~v~ 151 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY----E-PLAPYDRIY 151 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC----G-GGCCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC----C-CCCCeeEEE
Confidence 46799999999999999999986 668999999876555544 3457788999999985431 1 256899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
+..+-++. .+++.++|+|||.+++.+...
T Consensus 152 ~~~~~~~~--------------~~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 152 TTAAGPKI--------------PEPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp ESSBBSSC--------------CHHHHHTEEEEEEEEEEESSS
T ss_pred ECCchHHH--------------HHHHHHHcCCCcEEEEEECCC
Confidence 88654431 247889999999999987543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-11 Score=108.53 Aligned_cols=97 Identities=15% Similarity=0.250 Sum_probs=75.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHH----HcC-----CCcEEEEEccccchhhhhhccCCCc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQ----LSG-----ITNGYFIATNATSTFRSIVASYPGK 194 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~----~~~-----~~Nv~f~~~Da~~ll~~~~~~~~~s 194 (311)
++.+|||||||+|.++..+++.. |..+++|+|+++.+++.++ ..+ .+|+.++++|+.... ..++.
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~ 151 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-----AEEAP 151 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-----GGGCC
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc-----ccCCC
Confidence 46799999999999999999884 6679999998766555443 333 468999999987541 13568
Q ss_pred EeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 195 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 195 ~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
||.|++..+.+ .+++++.++|||||.+++.+.
T Consensus 152 fD~i~~~~~~~--------------~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 152 YDAIHVGAAAP--------------VVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEEEECSBBS--------------SCCHHHHHTEEEEEEEEEEES
T ss_pred cCEEEECCchH--------------HHHHHHHHhcCCCcEEEEEEe
Confidence 99998875533 345788999999999999764
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-10 Score=99.19 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=88.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.+++ .++ ++.++++|+.++ +.++|.|++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~--------~~~~D~v~~ 118 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF--------NSRVDIVIM 118 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC--------CCCCSEEEE
T ss_pred CcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHc--------CCCCCEEEE
Confidence 46799999999999999999874 3489999998877776654 344 899999999875 248999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+.|-.+ . ++.....+++++.++| |+.+.+.++.....+.+.+.+.+.|+....+
T Consensus 119 ~~p~~~--~----~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 119 NPPFGS--Q----RKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp CCCCSS--S----STTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred cCCCcc--c----cCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 854222 1 1123357899999998 6666555556667777888888888754433
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-11 Score=106.23 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=90.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|+|||||+|.+++.+|+..|...++|+|+++.++ ++++.+++. ++.+.++|+.+.+. ++..||.|+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~-----~~~~~D~Iv 95 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE-----EADNIDTIT 95 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC-----GGGCCCEEE
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc-----cccccCEEE
Confidence 46799999999999999999998888999999876554 445556775 49999999887621 233699987
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
+.-. .. . +-.++++...+.|+++|.|+++.... .+.+.+.+.++||...
T Consensus 96 iaGm--------Gg-~-lI~~IL~~~~~~l~~~~~lIlqp~~~--~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 96 ICGM--------GG-R-LIADILNNDIDKLQHVKTLVLQPNNR--EDDLRKWLAANDFEIV 144 (230)
T ss_dssp EEEE--------CH-H-HHHHHHHHTGGGGTTCCEEEEEESSC--HHHHHHHHHHTTEEEE
T ss_pred EeCC--------ch-H-HHHHHHHHHHHHhCcCCEEEEECCCC--hHHHHHHHHHCCCEEE
Confidence 5411 11 1 22578999999999999999987543 5577888899998654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.2e-11 Score=106.52 Aligned_cols=118 Identities=13% Similarity=0.162 Sum_probs=90.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCC-cEEEEEccccchhhhhhccCCC-cEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPG-KLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~-s~D~V 198 (311)
++.+|||||||+|.+++.+|+..|..+++|+|+++.++ ++++.+++. ++.+.++|+.+-+ +++ .+|.|
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l------~~~~~~D~I 88 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF------EETDQVSVI 88 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC------CGGGCCCEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc------ccCcCCCEE
Confidence 46799999999999999999999888999999876554 455566776 5999999986542 223 69988
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
++.-. .. . +-.+++++..+.|+|+|+|+++... -...+.+.+.++||...
T Consensus 89 viaG~--------Gg-~-~i~~Il~~~~~~L~~~~~lVlq~~~--~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 89 TIAGM--------GG-R-LIARILEEGLGKLANVERLILQPNN--REDDLRIWLQDHGFQIV 138 (225)
T ss_dssp EEEEE--------CH-H-HHHHHHHHTGGGCTTCCEEEEEESS--CHHHHHHHHHHTTEEEE
T ss_pred EEcCC--------Ch-H-HHHHHHHHHHHHhCCCCEEEEECCC--CHHHHHHHHHHCCCEEE
Confidence 86411 11 1 1258899999999999999998753 35577788899998654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-11 Score=111.67 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=77.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+..+ +.+++|+|+++.+++.+ +..+++|+.++.+|+.+... .+++||.|+
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Iv 149 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-----EFSPYDVIF 149 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-----cCCCeEEEE
Confidence 467999999999999999999876 47899999876555444 44578889999999987521 357899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
+..+-++. .+++.++|||||.+++.+..
T Consensus 150 ~~~~~~~~--------------~~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 150 VTVGVDEV--------------PETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ECSBBSCC--------------CHHHHHHEEEEEEEEEEBCB
T ss_pred EcCCHHHH--------------HHHHHHhcCCCcEEEEEECC
Confidence 88654431 15678899999999997644
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=5e-11 Score=102.04 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=80.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC---------CeEEEEchHHHHHHHHHHcCCCcEEEE-Eccccchhh-----hhhc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD---------LNFLGLELVTHCRDSLQLSGITNGYFI-ATNATSTFR-----SIVA 189 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~---------~~vvGiDi~~~a~~~a~~~~~~Nv~f~-~~Da~~ll~-----~~~~ 189 (311)
++.+|||||||+|.++..++++.+. .+++|+|+++. ....++.++ ++|+..... ..+
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~-------~~~~~~~~~~~~d~~~~~~~~~~~~~~- 93 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI-------FPLEGATFLCPADVTDPRTSQRILEVL- 93 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC-------CCCTTCEEECSCCTTSHHHHHHHHHHS-
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc-------ccCCCCeEEEeccCCCHHHHHHHHHhc-
Confidence 3678999999999999999999764 79999999863 234689999 999876421 112
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhh-----hhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~kr-----Rl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
++.+||.|+..++..+. .++.. ......+++++.++|+|||.|++.+-...-...+.+.+..
T Consensus 94 -~~~~fD~V~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (196)
T 2nyu_A 94 -PGRRADVILSDMAPNAT--GFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTE 160 (196)
T ss_dssp -GGGCEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred -CCCCCcEEEeCCCCCCC--CCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHH
Confidence 34689999987532221 11100 0111478999999999999999975332222344444444
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=104.11 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=80.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh-----hhhhc-cCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF-----RSIVA-SYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll-----~~~~~-~~~~s~D~V 198 (311)
++.+|||+|||+|.++..+|++ ...++|+|+++. ...+|+.++++|+.+.. ...++ ...+.||.|
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~-------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~V 95 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM-------EEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDV 95 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC-------CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEE
T ss_pred CCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc-------ccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEE
Confidence 4679999999999999999998 789999999753 23568999999987741 01110 001489999
Q ss_pred EEeCCCCCCCCch----hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 199 SIQCPNPDFNRPE----HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 199 ~i~fpdP~~k~~h----~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
+.+.+... ...+ .+........++.+.++|||||.|++.+-...-...+...+..
T Consensus 96 lsd~~~~~-~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~ 154 (191)
T 3dou_A 96 VSDAMAKV-SGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK 154 (191)
T ss_dssp EECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG
T ss_pred ecCCCcCC-CCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH
Confidence 98754322 1111 1101112577889999999999999876332223445555544
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.8e-11 Score=112.21 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=76.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.++ +.++ ++++|+.+|+.+. + .|. ++++|.|+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~-p~~~D~v~ 253 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDR-D--VPF-PTGFDAVW 253 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSS-S--CCC-CCCCSEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcccccc-C--CCC-CCCcCEEE
Confidence 457999999999999999999999999999997 55554443 3344 5799999998763 1 011 36899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-...... ....+|++++++|+|||++++..
T Consensus 254 ~~~vlh~~~~~------~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 254 MSQFLDCFSEE------EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp EESCSTTSCHH------HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EechhhhCCHH------HHHHHHHHHHHhcCCCcEEEEEe
Confidence 87542211110 11478999999999999998853
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=105.45 Aligned_cols=145 Identities=9% Similarity=0.071 Sum_probs=96.9
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCchhhhhhCCC-----chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEE
Q 021567 81 FGLNMVESGSAVWEFLKGRMLPGVSALDRAFPF-----DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGL 155 (311)
Q Consensus 81 ~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~-----~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGi 155 (311)
...+.|+..+..|+.+...+... ...|+. .+++.... .++.+|||||||+|.++..++ .+++|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~--~~~~~vLDiG~G~G~~~~~l~-----~~v~~~ 92 (215)
T 2zfu_A 24 AAQRLFQEDPEAFLLYHRGFQSQ----VKKWPLQPVDRIARDLRQR--PASLVVADFGCGDCRLASSIR-----NPVHCF 92 (215)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH----HTTSSSCHHHHHHHHHHTS--CTTSCEEEETCTTCHHHHHCC-----SCEEEE
T ss_pred HHHHHHHHhHHHHHHHHHHHHhh----hcccchhHHHHHHHHHhcc--CCCCeEEEECCcCCHHHHHhh-----ccEEEE
Confidence 34456777777887665433210 001111 11222111 245789999999999998884 589999
Q ss_pred chHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEE
Q 021567 156 ELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 235 (311)
Q Consensus 156 Di~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l 235 (311)
|+++. ++.++++|+.++ +.++++||.|++.+.-.+ . ....++++++++|+|||.+
T Consensus 93 D~s~~-----------~~~~~~~d~~~~-----~~~~~~fD~v~~~~~l~~-~--------~~~~~l~~~~~~L~~gG~l 147 (215)
T 2zfu_A 93 DLASL-----------DPRVTVCDMAQV-----PLEDESVDVAVFCLSLMG-T--------NIRDFLEEANRVLKPGGLL 147 (215)
T ss_dssp ESSCS-----------STTEEESCTTSC-----SCCTTCEEEEEEESCCCS-S--------CHHHHHHHHHHHEEEEEEE
T ss_pred eCCCC-----------CceEEEeccccC-----CCCCCCEeEEEEehhccc-c--------CHHHHHHHHHHhCCCCeEE
Confidence 99765 677899998875 445789999998754322 1 1158999999999999999
Q ss_pred EEEeCcHH--HHHHHHHHHHhcCCCcee
Q 021567 236 FLQSDIEE--VMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 236 ~~~tD~~~--~~~~~~~~l~~~g~~~~~ 261 (311)
++..-... -.+.+.+.+++.|+....
T Consensus 148 ~i~~~~~~~~~~~~~~~~l~~~Gf~~~~ 175 (215)
T 2zfu_A 148 KVAEVSSRFEDVRTFLRAVTKLGFKIVS 175 (215)
T ss_dssp EEEECGGGCSCHHHHHHHHHHTTEEEEE
T ss_pred EEEEcCCCCCCHHHHHHHHHHCCCEEEE
Confidence 99643322 245677888888876543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=110.45 Aligned_cols=114 Identities=11% Similarity=0.005 Sum_probs=77.3
Q ss_pred CCCeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHc-------CCCc-----------------------
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLS-------GITN----------------------- 172 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~-------~~~N----------------------- 172 (311)
...+|||+|||+|.+++.+++. .+..+++|+|+++.+++.++.+ ++.+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 3568999999999999999998 7778999999987777666532 2221
Q ss_pred ---EE-------------EEEccccchhhhh-hccCCCcEeEEEEeCCCCCCCCchh-hhhhhHHHHHHHHHhcccCCeE
Q 021567 173 ---GY-------------FIATNATSTFRSI-VASYPGKLILVSIQCPNPDFNRPEH-RWRMVQRSLVEAVSDLLVHDGK 234 (311)
Q Consensus 173 ---v~-------------f~~~Da~~ll~~~-~~~~~~s~D~V~i~fpdP~~k~~h~-krRl~~~~~l~~i~rvLkpGG~ 234 (311)
+. |+++|+.+..... +. ....||.|+.+.|--.....++ ........++++++++|+|||.
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhccccccccccceeeccccccccccccc-CCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 66 9999987752100 00 2348999998843111111000 0011235899999999999999
Q ss_pred EEEEe
Q 021567 235 VFLQS 239 (311)
Q Consensus 235 l~~~t 239 (311)
+++..
T Consensus 210 l~~~~ 214 (250)
T 1o9g_A 210 IAVTD 214 (250)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99943
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=108.98 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=75.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+|||||||+|.++..+++++|+.+++|+|+ .+.+.+++...++.+ +.++.+|+.+. +.++. |.|++
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~--D~v~~ 262 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE-----SYPEA--DAVLF 262 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS-----CCCCC--SEEEE
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC-----CCCCC--CEEEE
Confidence 467999999999999999999999999999997 334444554556654 99999998765 22333 99987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-....+ .....++++++++|+|||.+++..
T Consensus 263 ~~vlh~~~d------~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 263 CRILYSANE------QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp ESCGGGSCH------HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred echhccCCH------HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 754221111 012588999999999999998753
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.8e-11 Score=106.29 Aligned_cols=104 Identities=11% Similarity=0.079 Sum_probs=74.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHH----------HHHHHHHcCC-CcEEEEEcc-ccchhhhhhccC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----------CRDSLQLSGI-TNGYFIATN-ATSTFRSIVASY 191 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~----------a~~~a~~~~~-~Nv~f~~~D-a~~ll~~~~~~~ 191 (311)
++.+|||||||+|.++..++++. |+.+++|+|+++. |.+++...++ +|+.++++| .... ..+++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~ 119 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD---LGPIA 119 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC---CGGGT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc---cCCCC
Confidence 46799999999999999999985 7789999998653 4444444455 589999998 2211 11345
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+++||.|++..+-.+.... ..+++.+.++++|||.+++.+
T Consensus 120 ~~~fD~v~~~~~l~~~~~~--------~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFASA--------NALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp TCCCSEEEEESCGGGSSCH--------HHHHHHHHHHTTTCSEEEEEE
T ss_pred CCCEEEEEEccchhhCCCH--------HHHHHHHHHHhCCCCEEEEEE
Confidence 7899999987442221110 357777778888899999863
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=109.16 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=75.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...+|||||||+|.++..+++++|+.+++|+|+ ..+++.+ ...++. +++|+.+|+.+. +| ..+|.|+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~D~v~ 253 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----LP---VTADVVL 253 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CS---CCEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc----CC---CCCCEEE
Confidence 467999999999999999999999999999998 6555544 345654 899999998652 22 2499998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-.++.+ .....++++++++|+|||++++..
T Consensus 254 ~~~vl~~~~~------~~~~~~l~~~~~~L~pgG~l~i~e 287 (374)
T 1qzz_A 254 LSFVLLNWSD------EDALTILRGCVRALEPGGRLLVLD 287 (374)
T ss_dssp EESCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeccccCCCH------HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8743221111 011379999999999999998854
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-11 Score=105.81 Aligned_cols=101 Identities=25% Similarity=0.299 Sum_probs=76.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-----CCCeEEEEchHHHHHHHH----HHcC-----CCcEEEEEccccchhhhhhcc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLELVTHCRDSL----QLSG-----ITNGYFIATNATSTFRSIVAS 190 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-----p~~~vvGiDi~~~a~~~a----~~~~-----~~Nv~f~~~Da~~ll~~~~~~ 190 (311)
++.+|||||||+|.++..+++.. |+.+++|+|+++.+++.+ +..+ ..|+.++.+|+.+...... .
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~ 158 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK-K 158 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH-H
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC-c
Confidence 46799999999999999999985 567999999876555444 3445 5789999999987521000 1
Q ss_pred CCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 191 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 191 ~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
.++.||.|++..+.+ .+++++.+.|+|||++++.+.
T Consensus 159 ~~~~fD~I~~~~~~~--------------~~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASAS--------------ELPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBS--------------SCCHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchH--------------HHHHHHHHhcCCCcEEEEEEc
Confidence 256899998875544 235778899999999999763
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=111.44 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=84.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++ .+++ +++++++|+.+. +..+++||.|++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~-----~~~~~~fD~Ii~ 304 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEA-----LTEEARFDIIVT 304 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTT-----SCTTCCEEEEEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhc-----cccCCCeEEEEE
Confidence 3569999999999999999998 579999998776665554 3444 489999999876 223589999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-HHHHHHHHHHH
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF 252 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~~~~~~~~~~l 252 (311)
+.|-.+..... ......+++++.++|+|||.+++.++. ..|...+.+.+
T Consensus 305 npp~~~~~~~~---~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f 354 (381)
T 3dmg_A 305 NPPFHVGGAVI---LDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKF 354 (381)
T ss_dssp CCCCCTTCSSC---CHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHH
T ss_pred CCchhhccccc---HHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhh
Confidence 84432211100 012258999999999999999998754 34444454444
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=109.81 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=75.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++. +..+++|+|+++ .|.++++.+++ +++.++++|+.++ +.+++++|.|+.
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~Ivs 137 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-----HLPVEKVDVIIS 137 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSCSCEEEEEE
T ss_pred CCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHh-----cCCCCcEEEEEE
Confidence 4579999999999999999987 446999999763 44455555676 6899999999876 335689999997
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
....-. .++. ...+.+++++.++|||||.++
T Consensus 138 ~~~~~~---l~~~--~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 138 EWMGYF---LLFE--SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CCCBTT---BTTT--CHHHHHHHHHHHHEEEEEEEE
T ss_pred cCchhh---ccCH--HHHHHHHHHHHhhcCCCcEEE
Confidence 631110 0010 112578999999999999987
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.1e-11 Score=112.31 Aligned_cols=117 Identities=16% Similarity=0.263 Sum_probs=83.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+|||||||+|.++..+++..|+.+++|+|++..+++.++ ..++ ++.++.+|+... .+++||.|++
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~-------~~~~fD~Iv~ 267 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSE-------VKGRFDMIIS 267 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTT-------CCSCEEEEEE
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEcccccc-------ccCCeeEEEE
Confidence 356899999999999999999999889999998776665554 3444 367888887654 2678999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-HHHHHHHHHHH
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF 252 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~~~~~~~~~~l 252 (311)
+.|-.+ ..+ ........++++++++|+|||.+++.+.. ..|...+.+.+
T Consensus 268 ~~~~~~--g~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f 317 (343)
T 2pjd_A 268 NPPFHD--GMQ-TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETF 317 (343)
T ss_dssp CCCCCS--SSH-HHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHH
T ss_pred CCCccc--Ccc-CCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhc
Confidence 854221 100 01112368999999999999999997533 34444444433
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-10 Score=102.33 Aligned_cols=110 Identities=11% Similarity=0.131 Sum_probs=69.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc-EEEEEccccchhhhhhccC-CCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN-GYFIATNATSTFRSIVASY-PGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N-v~f~~~Da~~ll~~~~~~~-~~s~D~V~ 199 (311)
+.+|||||||+|.++..++++.|+.+++|+|+++.+++.+ +..++.+ ++++++|+.+.+...++.. +++||.|+
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~ 145 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 145 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEE
Confidence 5689999999999999999988889999999876655544 4456654 9999999877311112211 36899999
Q ss_pred EeCCCCCCCCc---hh------hhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 200 IQCPNPDFNRP---EH------RWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 200 i~fpdP~~k~~---h~------krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++-| +.... +. ++......++.+++++|||||.+.+
T Consensus 146 ~npp--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 146 CNPP--FFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp ECCC--CC-------------------------CTTTTHHHHTHHHH
T ss_pred ECCC--CccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 8733 22111 00 0001113566777888888887765
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=106.40 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=79.0
Q ss_pred CCeEEEEeccc---cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhh--------hhhccCC
Q 021567 126 QPLVVDIGSGN---GLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFR--------SIVASYP 192 (311)
Q Consensus 126 ~~~vLDIGcGt---G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~--------~~~~~~~ 192 (311)
..+|||||||+ |.++..+++..|+.+++|+|++..+++.+++. ...+++++++|+.+... ..+ +.
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~--d~ 155 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI--DF 155 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC--CT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC--CC
Confidence 46899999999 99888788888999999999988777766542 23689999999976410 112 22
Q ss_pred CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 193 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 193 ~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.++|.|+++..-.|..+.. ...++++++++|+|||.|++..
T Consensus 156 ~~~d~v~~~~vlh~~~d~~------~~~~l~~~~~~L~pGG~l~i~~ 196 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDV------VDRVVGAYRDALAPGSYLFMTS 196 (274)
T ss_dssp TSCCEEEETTTGGGSCTTT------HHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCEEEEEechhhhCCcHH------HHHHHHHHHHhCCCCcEEEEEE
Confidence 4789998775433322211 1489999999999999999864
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=105.02 Aligned_cols=118 Identities=15% Similarity=0.094 Sum_probs=89.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.+++.+|+..|...++|+|+++.+++ +++.+++.+ +.+.++|+.+.+. ++..||.|+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~-----~~~~~D~Iv 95 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE-----KKDAIDTIV 95 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC-----GGGCCCEEE
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC-----ccccccEEE
Confidence 467999999999999999999988889999998765554 445568765 9999999887621 123599987
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~ 259 (311)
+.-. .+ . +-.+++++..+.|+++|.|+++.... ...+.+.+.++||..
T Consensus 96 iagm--------Gg-~-lI~~IL~~~~~~L~~~~~lIlq~~~~--~~~lr~~L~~~Gf~i 143 (244)
T 3gnl_A 96 IAGM--------GG-T-LIRTILEEGAAKLAGVTKLILQPNIA--AWQLREWSEQNNWLI 143 (244)
T ss_dssp EEEE--------CH-H-HHHHHHHHTGGGGTTCCEEEEEESSC--HHHHHHHHHHHTEEE
T ss_pred EeCC--------ch-H-HHHHHHHHHHHHhCCCCEEEEEcCCC--hHHHHHHHHHCCCEE
Confidence 6410 11 1 22578999999999999999987542 456778888888864
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-11 Score=104.15 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=75.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC--CCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||||||+|.++..+++.. .+++|+|+++.+++.++++- ..|+.++++|+.+.+ + .+++||.|++..
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~v~~~~ 142 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY----E-EEKPYDRVVVWA 142 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC----G-GGCCEEEEEESS
T ss_pred CCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc----c-cCCCccEEEECC
Confidence 46799999999999999999985 79999999887777765431 128999999998731 1 357899999875
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
+-++ +.+++.++|+|||.+++.+..
T Consensus 143 ~~~~--------------~~~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 143 TAPT--------------LLCKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp BBSS--------------CCHHHHHTEEEEEEEEEEECS
T ss_pred cHHH--------------HHHHHHHHcCCCcEEEEEEcC
Confidence 5432 224688999999999998754
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-11 Score=105.39 Aligned_cols=99 Identities=13% Similarity=0.197 Sum_probs=75.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++..+ .+++|+|+++.+++.+ ...+++|+.+..+|+..- ++ ....+|.|++
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~-~~~~fD~Ii~ 164 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG----FP-PKAPYDVIIV 164 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CG-GGCCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccC----CC-CCCCccEEEE
Confidence 467899999999999999999987 8999999876555444 446778899999998322 11 1235999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 243 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~ 243 (311)
..+-++ +.+++.++|+|||.+++.+....
T Consensus 165 ~~~~~~--------------~~~~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 165 TAGAPK--------------IPEPLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp CSBBSS--------------CCHHHHHTEEEEEEEEEEECSSS
T ss_pred CCcHHH--------------HHHHHHHhcCCCcEEEEEEecCC
Confidence 765443 23467899999999999886543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.3e-11 Score=106.97 Aligned_cols=132 Identities=13% Similarity=-0.002 Sum_probs=88.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC--CC-------------------------------
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--IT------------------------------- 171 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~--~~------------------------------- 171 (311)
++.+|||||||+|.++..+++..+ .+++|+|+++.+++.+++.- ..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 457899999999999999998754 58999999887777765321 11
Q ss_pred cE-EEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc---------
Q 021567 172 NG-YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--------- 241 (311)
Q Consensus 172 Nv-~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~--------- 241 (311)
++ .++++|+.+... ..+...++||.|++.+.-..... +. -....++++++++|||||.+++.+-.
T Consensus 135 ~v~~~~~~d~~~~~~-~~~~~~~~fD~v~~~~~l~~~~~--~~--~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~ 209 (265)
T 2i62_A 135 AIKQVLKCDVTQSQP-LGGVSLPPADCLLSTLCLDAACP--DL--PAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGE 209 (265)
T ss_dssp HEEEEEECCTTSSST-TTTCCCCCEEEEEEESCHHHHCS--SH--HHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred hheeEEEeeeccCCC-CCccccCCccEEEEhhhhhhhcC--Ch--HHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCC
Confidence 28 999999987621 00112289999998753110000 00 01258899999999999999986411
Q ss_pred -----HH-HHHHHHHHHHhcCCCceee
Q 021567 242 -----EE-VMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 242 -----~~-~~~~~~~~l~~~g~~~~~~ 262 (311)
.. -.+.+.+.+.+.|+.....
T Consensus 210 ~~~~~~~~~~~~~~~~l~~aGf~~~~~ 236 (265)
T 2i62_A 210 QKFSSLPLGWETVRDAVEEAGYTIEQF 236 (265)
T ss_dssp EEEECCCCCHHHHHHHHHHTTCEEEEE
T ss_pred ccccccccCHHHHHHHHHHCCCEEEEE
Confidence 00 1336677778888765544
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-10 Score=108.45 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=85.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||+|||+|.+++.+|...+..+++|+|+++.+++ +++..++ +++.+.++|+.++ +.+++++|.|+
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~fD~Ii 291 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL-----SQYVDSVDFAI 291 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG-----GGTCSCEEEEE
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC-----CcccCCcCEEE
Confidence 467899999999999999999977679999998765544 4445676 6899999999987 33568999999
Q ss_pred EeCCCCCCCCc--hhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCc
Q 021567 200 IQCPNPDFNRP--EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 200 i~fpdP~~k~~--h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~ 259 (311)
++.| +-... ...-..+.+.+++++.++| ||.+++.+.+... +.+.+.+.|+..
T Consensus 292 ~npP--yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~---~~~~~~~~G~~~ 346 (373)
T 3tm4_A 292 SNLP--YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKA---IEEAIAENGFEI 346 (373)
T ss_dssp EECC--CC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHH---HHHHHHHTTEEE
T ss_pred ECCC--CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHH---HHHHHHHcCCEE
Confidence 9843 32111 0111223478999999999 4444444544433 334566677653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=108.22 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=75.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
..+|||||||+|.++..+++++|+.+++++|+ +.+++ ++.+.++ ++++|+.+|+.+- + +. .+|.|++
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--p~-~~D~v~~ 241 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP----L--PA-GAGGYVL 241 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C--CC-SCSEEEE
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC----C--CC-CCcEEEE
Confidence 57899999999999999999999999999997 54444 4444565 6799999998632 2 23 7999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-..+.+ -...+++++++++|+|||++++..
T Consensus 242 ~~vlh~~~~------~~~~~~l~~~~~~L~pgG~l~i~e 274 (332)
T 3i53_A 242 SAVLHDWDD------LSAVAILRRCAEAAGSGGVVLVIE 274 (332)
T ss_dssp ESCGGGSCH------HHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ehhhccCCH------HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 643221111 012489999999999999999853
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=108.19 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=78.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||||||+|.++..+++++|+.+++++|+ .+.+.+++...++ ++++++.+|+.+. +. ..+..+|.|++.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~---~~~~~~D~v~~~ 255 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDA-RN---FEGGAADVVMLN 255 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCG-GG---GTTCCEEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccC-cc---cCCCCccEEEEe
Confidence 57999999999999999999999999999997 3445555555565 4699999998875 11 125669999987
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..-.++.+. ....++++++++|+|||++++..
T Consensus 256 ~vlh~~~~~------~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 256 DCLHYFDAR------EAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp SCGGGSCHH------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCCHH------HHHHHHHHHHHHcCCCCEEEEEE
Confidence 532211110 11489999999999999999853
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-11 Score=110.61 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=83.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---------------------CC-------------
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------------------GI------------- 170 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---------------------~~------------- 170 (311)
.+.+|||||||+|.+...++. .+..+|+|+|+++.+++.+++. +.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 457899999999995544443 3456999999988887766541 00
Q ss_pred CcEEEEEccccchhhhhhc---cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc------
Q 021567 171 TNGYFIATNATSTFRSIVA---SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------ 241 (311)
Q Consensus 171 ~Nv~f~~~Da~~ll~~~~~---~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~------ 241 (311)
..+.++++|+.+.++ ++ .++++||.|++++.-.+.... . -....++++++++|||||.|++....
T Consensus 150 ~~~~~~~~D~~~~~~--~~~~~~~~~~fD~V~~~~~l~~~~~~--~--~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~ 223 (289)
T 2g72_A 150 RVKRVLPIDVHQPQP--LGAGSPAPLPADALVSAFCLEAVSPD--L--ASFQRALDHITTLLRPGGHLLLIGALEESWYL 223 (289)
T ss_dssp HEEEEECCCTTSSST--TCSSCSSCSSEEEEEEESCHHHHCSS--H--HHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE
T ss_pred hhceEEecccCCCCC--ccccccCCCCCCEEEehhhhhhhcCC--H--HHHHHHHHHHHHhcCCCCEEEEEEecCcceEE
Confidence 015677788877311 11 235779999988642210000 0 01258899999999999999985200
Q ss_pred ---------HHHHHHHHHHHHhcCCCceee
Q 021567 242 ---------EEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 242 ---------~~~~~~~~~~l~~~g~~~~~~ 262 (311)
..-.+++.+.+++.|+.....
T Consensus 224 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 224 AGEARLTVVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp ETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cCCeeeeeccCCHHHHHHHHHHcCCeEEEe
Confidence 001345666777777765433
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.3e-10 Score=108.06 Aligned_cols=132 Identities=11% Similarity=0.080 Sum_probs=90.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-C-cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-T-NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||+|||+|.+++.+|+.. ..+++|+|+++.+++.+ +.+++ + |+.|+++|+.+.+... ...+..+|.|
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~-~~~~~~fD~I 297 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY-RDRGEKFDVI 297 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHH-HHTTCCEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHH-HhcCCCCCEE
Confidence 46799999999999999999874 46899999876655544 45677 6 8999999998875432 1124689999
Q ss_pred EEeCCCCCCCCchhhhh--hhHHHHHHHHHhcccCCeEEEEEeCcH-----HHHHHHHHHHHhcCCCc
Q 021567 199 SIQCPNPDFNRPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krR--l~~~~~l~~i~rvLkpGG~l~~~tD~~-----~~~~~~~~~l~~~g~~~ 259 (311)
+++-|- +.+.+....+ -...+++.++.+.|+|||.+++.+... .+.+.+.+.+.+.|...
T Consensus 298 i~dpP~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 364 (396)
T 3c0k_A 298 VMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV 364 (396)
T ss_dssp EECCSS-TTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred EECCCC-CCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence 887331 1111100000 112588999999999999999987553 23333445667777543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-10 Score=106.98 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=81.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||+|||+|.+++.+|+. +..+++|+|+++.+++. ++.++++ |+.|+++|+.+.+... ...+.++|.|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~-~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKL-QKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH-HHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHH-HhhCCCCCEEE
Confidence 4679999999999999999987 34589999987665544 4456776 8999999998875432 11356899998
Q ss_pred EeCCCCCCCCchhhhhh--hHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 200 IQCPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl--~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
++-| -+.+........ ....++.++.++|+|||.+++.+.+
T Consensus 295 ~dpP-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 295 LDPP-AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp ECCC-CSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred ECCC-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 8622 111111111111 1258899999999999999988654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-10 Score=107.79 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=75.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...+|||||||+|.++..+++++|+.+++++|+ +.++ +++...++ ++++|+.+|+.+. + +. .+|.|+
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~--p~-~~D~v~ 273 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET----I--PD-GADVYL 273 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC----C--CS-SCSEEE
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC----C--CC-CceEEE
Confidence 467999999999999999999999999999998 5444 44444554 5799999998732 2 23 799998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+...-.++.+ ....++|++++++|+|||++++.
T Consensus 274 ~~~vlh~~~d------~~~~~~L~~~~~~L~pgG~l~i~ 306 (369)
T 3gwz_A 274 IKHVLHDWDD------DDVVRILRRIATAMKPDSRLLVI 306 (369)
T ss_dssp EESCGGGSCH------HHHHHHHHHHHTTCCTTCEEEEE
T ss_pred hhhhhccCCH------HHHHHHHHHHHHHcCCCCEEEEE
Confidence 7643221111 11137999999999999999985
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-11 Score=116.60 Aligned_cols=101 Identities=21% Similarity=0.325 Sum_probs=76.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEE--EEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY--FIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~--f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||||||+|.++..++++ +.+++|+|+++.+++.+++.+..+.. |...++..+ ++++++||.|++..
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l-----~~~~~~fD~I~~~~ 179 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDV-----RRTEGPANVIYAAN 179 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHH-----HHHHCCEEEEEEES
T ss_pred CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhc-----ccCCCCEEEEEECC
Confidence 4679999999999999999987 45999999999999988877654332 223444333 33478999999875
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
.-.+..+ ...++++++++|||||.+++.+.
T Consensus 180 vl~h~~d--------~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 180 TLCHIPY--------VQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp CGGGCTT--------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHhcCC--------HHHHHHHHHHHcCCCeEEEEEeC
Confidence 4322211 14899999999999999999764
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-10 Score=97.91 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
.+.+|||+|||+|.++..+++. +..+++|+|+++.+++.++++-. |+.++++|+.++ ++++|.|+++.|-
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~d~~~~--------~~~~D~v~~~~p~ 120 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-GVNFMVADVSEI--------SGKYDTWIMNPPF 120 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-TSEEEECCGGGC--------CCCEEEEEECCCC
T ss_pred CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-CCEEEECcHHHC--------CCCeeEEEECCCc
Confidence 4578999999999999999987 45589999999998888876533 899999998875 2689999988443
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
.+... .....+++++.++| |+ +++.++. ....+..+.+.+.|
T Consensus 121 ~~~~~------~~~~~~l~~~~~~~--g~-~~~~~~~-~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 121 GSVVK------HSDRAFIDKAFETS--MW-IYSIGNA-KARDFLRREFSARG 162 (200)
T ss_dssp -------------CHHHHHHHHHHE--EE-EEEEEEG-GGHHHHHHHHHHHE
T ss_pred hhccC------chhHHHHHHHHHhc--Cc-EEEEEcC-chHHHHHHHHHHCC
Confidence 22111 12247899999998 44 5554433 33456667777776
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=113.21 Aligned_cols=104 Identities=16% Similarity=0.092 Sum_probs=74.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH-----------HHHHHHcC--CCcEEEEEccccchhhhhhccC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC-----------RDSLQLSG--ITNGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a-----------~~~a~~~~--~~Nv~f~~~Da~~ll~~~~~~~ 191 (311)
++.+|||||||+|.+++.+|+..+...++|+|++..+ .++++..| ..|+.++++|...... .++..
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~-~~~~~ 320 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN-RVAEL 320 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH-HHHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccc-ccccc
Confidence 4679999999999999999998777789999976544 33444556 5799999987553100 01112
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.++||.|+++..- +. .. -+..|+++.++|||||++++.
T Consensus 321 ~~~FDvIvvn~~l-~~--~d------~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 321 IPQCDVILVNNFL-FD--ED------LNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp GGGCSEEEECCTT-CC--HH------HHHHHHHHHTTCCTTCEEEES
T ss_pred cCCCCEEEEeCcc-cc--cc------HHHHHHHHHHhCCCCeEEEEe
Confidence 4689999986321 10 11 146789999999999999884
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-10 Score=106.54 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=76.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+|||||||+|.++..+++++|+.+++++|+ .+.+.+++...++. ++.|+.+|+.+. +| ..+|.|++
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~D~v~~ 255 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP----LP---RKADAIIL 255 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC----CS---SCEEEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC----CC---CCccEEEE
Confidence 467999999999999999999999999999996 34455555555664 899999998653 22 24999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-..+.+ .....++++++++|+|||.+++..
T Consensus 256 ~~vl~~~~~------~~~~~~l~~~~~~L~pgG~l~i~e 288 (360)
T 1tw3_A 256 SFVLLNWPD------HDAVRILTRCAEALEPGGRILIHE 288 (360)
T ss_dssp ESCGGGSCH------HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCCCH------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 643211111 011479999999999999999864
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7e-11 Score=108.68 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=75.0
Q ss_pred CCeEEEEeccccH----HHHHHHhhCC----CCeEEEEchHHHHHHHHHHcC-------------------------C--
Q 021567 126 QPLVVDIGSGNGL----FLLGMARKRK----DLNFLGLELVTHCRDSLQLSG-------------------------I-- 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~----~~~~lA~~~p----~~~vvGiDi~~~a~~~a~~~~-------------------------~-- 170 (311)
..+|+|+|||||. +++.|++..| +.+++|+|+++.+++.|++.- -
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4689999999999 5666676644 468999999999999887531 0
Q ss_pred --------CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 171 --------TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 171 --------~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+|.|.++|+.+. .++ .++.||+|++...-.++.. ....++++++++.|+|||.|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~---~~~-~~~~fDlI~crnvliyf~~------~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEK---QYN-VPGPFDAIFCRNVMIYFDK------TTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCS---SCC-CCCCEEEEEECSSGGGSCH------HHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCC---CCC-cCCCeeEEEECCchHhCCH------HHHHHHHHHHHHHhCCCcEEEEE
Confidence 2689999998763 121 2578999987533222211 12358999999999999999983
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-11 Score=109.70 Aligned_cols=130 Identities=14% Similarity=0.047 Sum_probs=85.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------CC---------------------------C
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------GI---------------------------T 171 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~~---------------------------~ 171 (311)
++.+|||||||+|.++..++... -.+|+|+|+++.+++.+++. .. .
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 45789999999998887777653 23799999988777765431 00 1
Q ss_pred cEE-EEEccccchhhhhhc-cCCCcEeEEEEeCCCCCC-CCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH------
Q 021567 172 NGY-FIATNATSTFRSIVA-SYPGKLILVSIQCPNPDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE------ 242 (311)
Q Consensus 172 Nv~-f~~~Da~~ll~~~~~-~~~~s~D~V~i~fpdP~~-k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~------ 242 (311)
++. ++++|+.+..+ ++ ..+++||.|+.++.-.+. ... -....++++++++|||||.|++.+-..
T Consensus 134 ~i~~~~~~D~~~~~~--~~~~~~~~fD~V~~~~~l~~i~~~~-----~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~ 206 (263)
T 2a14_A 134 AVKRVLKCDVHLGNP--LAPAVLPLADCVLTLLAMECACCSL-----DAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV 206 (263)
T ss_dssp HEEEEEECCTTSSST--TTTCCCCCEEEEEEESCHHHHCSSH-----HHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE
T ss_pred hhheEEeccccCCCC--CCccccCCCCEeeehHHHHHhcCCH-----HHHHHHHHHHHHHcCCCcEEEEEEeecCcccee
Confidence 344 88999887411 11 125789999988542110 000 011478999999999999999974110
Q ss_pred --------H-HHHHHHHHHHhcCCCceee
Q 021567 243 --------E-VMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 243 --------~-~~~~~~~~l~~~g~~~~~~ 262 (311)
. -.+++.+.+.+.|+.....
T Consensus 207 g~~~~~~~~~~~~~l~~~l~~aGF~i~~~ 235 (263)
T 2a14_A 207 GKREFSCVALEKGEVEQAVLDAGFDIEQL 235 (263)
T ss_dssp TTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCeEeeccccCHHHHHHHHHHCCCEEEEE
Confidence 0 1446778888888865443
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-11 Score=111.64 Aligned_cols=103 Identities=12% Similarity=0.020 Sum_probs=71.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCC------cEEEE--EccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT------NGYFI--ATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~------Nv~f~--~~Da~~ll~~~~~~~~~s~D 196 (311)
++.+|||||||+|.++..++++ ..|+|||+++. ...+++.... |+.++ ++|+.++ ++++||
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m-~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-------~~~~fD 142 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTL-GVGGHEVPRITESYGWNIVKFKSRVDIHTL-------PVERTD 142 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECC-CCSSCCCCCCCCBTTGGGEEEECSCCTTTS-------CCCCCS
T ss_pred CCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchh-hhhhhhhhhhhhccCCCeEEEecccCHhHC-------CCCCCc
Confidence 4679999999999999999987 68999998762 1111112222 78999 9998875 367899
Q ss_pred EEEEeCCCCCCCCch-hhhhhhHHHHHHHHHhcccCCe--EEEEEeCc
Q 021567 197 LVSIQCPNPDFNRPE-HRWRMVQRSLVEAVSDLLVHDG--KVFLQSDI 241 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h-~krRl~~~~~l~~i~rvLkpGG--~l~~~tD~ 241 (311)
.|++.+. ...-... ...+. ..+|+.+.++|+||| .|++.+-.
T Consensus 143 ~V~sd~~-~~~~~~~~d~~~~--l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 143 VIMCDVG-ESSPKWSVESERT--IKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEEECCC-CCCSCHHHHHHHH--HHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEEEeCc-ccCCccchhHHHH--HHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9998765 2111100 00011 137899999999999 99987633
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-10 Score=108.93 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=75.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH---HHHHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~---~~a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.+++.+|++. ..+++|+|++ +.|.++++.+++.+ +.++++|+.++ +. ++++|.|++
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~~D~Iv~ 135 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDI-----SL-PEKVDVIIS 135 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGC-----CC-SSCEEEEEE
T ss_pred CCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhc-----Cc-CCcceEEEE
Confidence 46799999999999999999873 3499999976 45555566667654 99999999886 22 388999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
........ + ......+++++.++|||||.+++
T Consensus 136 ~~~~~~l~---~--e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 136 EWMGYFLL---R--ESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp CCCBTTBT---T--TCTHHHHHHHHHHHEEEEEEEES
T ss_pred cChhhccc---c--hHHHHHHHHHHHhhCCCCeEEEE
Confidence 53211110 0 01125789999999999999976
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-10 Score=106.43 Aligned_cols=100 Identities=15% Similarity=0.263 Sum_probs=74.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchH---HHHHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~---~~a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.++..+|+. +..+++|+|++ +.|.++++.+++. ++.++++|+.++ +.+++.+|.|+..
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~Ivs~ 112 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-----HLPFPKVDIIISE 112 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSSSCEEEEEEC
T ss_pred CCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhc-----cCCCCcccEEEEe
Confidence 578999999999999999986 45699999976 4455555566764 699999999886 3346889999976
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
.+.... ++. ..-+.++.++.++|+|||.++
T Consensus 113 ~~~~~l---~~~--~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 113 WMGYFL---LYE--SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCBTTB---STT--CCHHHHHHHHHHHEEEEEEEE
T ss_pred Cchhhc---ccH--HHHHHHHHHHHhhcCCCeEEE
Confidence 432211 010 112478999999999999997
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-11 Score=111.82 Aligned_cols=102 Identities=16% Similarity=0.043 Sum_probs=71.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCC------cEEEE--EccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT------NGYFI--ATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~------Nv~f~--~~Da~~ll~~~~~~~~~s~D 196 (311)
++.+|||||||+|.++..+|++ ..|+|||+++ +...+++.... |+.++ ++|+.++ + +++||
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-----~--~~~fD 150 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-----E--PFQAD 150 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-----C--CCCCS
T ss_pred CCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-----C--CCCcC
Confidence 4678999999999999999987 5899999876 22222222222 79999 9998875 3 67899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCe--EEEEEe
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG--KVFLQS 239 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG--~l~~~t 239 (311)
.|++.+. ...-. +.........+|+++.++||||| .|++.+
T Consensus 151 ~Vvsd~~-~~~~~-~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 151 TVLCDIG-ESNPT-AAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp EEEECCC-CCCSC-HHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEECCC-cCCCc-hhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 9998765 21111 00000001137899999999999 988865
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7e-10 Score=106.46 Aligned_cols=130 Identities=12% Similarity=0.182 Sum_probs=86.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCC--cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||+|||+|.+++.+|+.. ...++|+|+++. |.++++.++++ |++|+++|+.+.++... .....||.|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~-~~~~~fD~I 289 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYAR-RHHLTYDII 289 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHH-HTTCCEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHH-HhCCCccEE
Confidence 46799999999999999999863 348999998654 45555566776 89999999988654321 124589999
Q ss_pred EEeCCCCCCCC-chhhhhhh--HHHHHHHHHhcccCCeEEEEEeCcHH-----HHHHHHHHHHhcCCC
Q 021567 199 SIQCPNPDFNR-PEHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDIEE-----VMLRMKQQFLEYGKG 258 (311)
Q Consensus 199 ~i~fpdP~~k~-~h~krRl~--~~~~l~~i~rvLkpGG~l~~~tD~~~-----~~~~~~~~l~~~g~~ 258 (311)
+++- |.+.. ++...... ..++++.+.++|+|||.+++.+.... +.+.+.+.+...|..
T Consensus 290 i~DP--P~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 290 IIDP--PSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp EECC--CCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred EECC--CCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 8862 32210 01111111 25688889999999999999876532 222333444555554
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-10 Score=106.76 Aligned_cols=107 Identities=9% Similarity=-0.090 Sum_probs=83.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|||||||+|.++..+++. + .+++++|+++.+++.+++. ..++++++.+|+... . ++||
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-------~-~~fD 141 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-------I-KKYD 141 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC-------C-CCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH-------H-hhCC
Confidence 3468999999999999999988 7 8999999988777665432 124799999998775 1 6799
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHh
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLE 254 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~ 254 (311)
+|++..+||. .+++.++++|+|||.+++.+.+. .....+.+.+.+
T Consensus 142 ~Ii~d~~dp~-------------~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~ 190 (262)
T 2cmg_A 142 LIFCLQEPDI-------------HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGG 190 (262)
T ss_dssp EEEESSCCCH-------------HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHT
T ss_pred EEEECCCChH-------------HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHH
Confidence 9999887773 58999999999999999975432 234444555544
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.6e-10 Score=106.44 Aligned_cols=121 Identities=9% Similarity=0.022 Sum_probs=86.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~ 199 (311)
++.+||||| |+|.+++.+++..|+.+++|+|+++.+++. ++..+++|++++++|+.+.+ +. .+++||.|+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l----~~~~~~~fD~Vi 246 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPL----PDYALHKFDTFI 246 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCC----CTTTSSCBSEEE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhc----hhhccCCccEEE
Confidence 357999999 999999999998887899999987655544 44557779999999998732 21 256899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCe-EEEEEeCc----HHHHHHHHHHHH-hcCCCc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDI----EEVMLRMKQQFL-EYGKGK 259 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG-~l~~~tD~----~~~~~~~~~~l~-~~g~~~ 259 (311)
++.|-. .. . ...+++++.++|+||| .+++.+.. ......+.+.+. +.|+..
T Consensus 247 ~~~p~~------~~-~--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 303 (373)
T 2qm3_A 247 TDPPET------LE-A--IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI 303 (373)
T ss_dssp ECCCSS------HH-H--HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred ECCCCc------hH-H--HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence 874311 11 1 2689999999999999 44665543 222245555566 666543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.6e-11 Score=104.43 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=74.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC------CCeEEEEchHHHHHHHHH----HcC-----CCcEEEEEccccchhhhhhc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK------DLNFLGLELVTHCRDSLQ----LSG-----ITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p------~~~vvGiDi~~~a~~~a~----~~~-----~~Nv~f~~~Da~~ll~~~~~ 189 (311)
++.+|||||||+|.++..+++..+ ..+++|+|+++.+++.++ ..+ ..|+.++++|+.+. ++
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~ 159 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG----YP 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC----CG
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC----CC
Confidence 467999999999999999998754 369999998765555443 333 56899999998763 12
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
..+.||.|++..+-++ +++++.+.|||||++++.+.
T Consensus 160 -~~~~fD~I~~~~~~~~--------------~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 160 -PNAPYNAIHVGAAAPD--------------TPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp -GGCSEEEEEECSCBSS--------------CCHHHHHTEEEEEEEEEEES
T ss_pred -cCCCccEEEECCchHH--------------HHHHHHHHhcCCCEEEEEEe
Confidence 2368999998765442 34678899999999999764
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-10 Score=105.97 Aligned_cols=110 Identities=9% Similarity=0.005 Sum_probs=76.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc--EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN--GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N--v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+.+|||+|||+|.+++.+|+.. .+++|+|+++.+++.+ +.+++++ +.++++|+.+++.... ..+..||.|+
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~-~~~~~fD~Ii 230 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE-RRGSTYDIIL 230 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH-HHTCCBSEEE
T ss_pred CCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHH-hcCCCceEEE
Confidence 5689999999999999999874 4999999876665554 4457764 9999999988743211 0146899998
Q ss_pred EeCCCCCCCC-ch--hhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNR-PE--HRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~-~h--~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++-|- .... .. ....-....+++++.++|+|||.|++.+
T Consensus 231 ~dPP~-~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~ 272 (332)
T 2igt_A 231 TDPPK-FGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 272 (332)
T ss_dssp ECCCS-EEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred ECCcc-ccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 86321 0000 00 0000112588999999999999977754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-10 Score=106.42 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++. +..+++|+|+++ .|.++++.+++ +++.++++|+.++ + .++++|.|++
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-----~-~~~~~D~Ivs 122 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-----S-LPEQVDIIIS 122 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-----C-CSSCEEEEEE
T ss_pred CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhC-----C-CCCceeEEEE
Confidence 3579999999999999999986 456999999764 44455555676 6899999999876 2 2468999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..+....... .....+.++.++|||||.+++.
T Consensus 123 ~~~~~~~~~~------~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 123 EPMGYMLFNE------RMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CCCBTTBTTT------SHHHHHHHGGGGEEEEEEEESC
T ss_pred eCchhcCChH------HHHHHHHHHHhhcCCCeEEEEe
Confidence 6432111000 1136777889999999999854
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-10 Score=110.86 Aligned_cols=112 Identities=20% Similarity=0.200 Sum_probs=81.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..+..+|+..++ ..++|+|++..+++ ++++.|++|+.++++|+..+. ..+ .++.||.|+
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~-~~~--~~~~fD~Vl 335 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP-EII--GEEVADKVL 335 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS-SSS--CSSCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc-hhh--ccCCCCEEE
Confidence 4679999999999999999998776 79999998765544 444568889999999998762 112 347899999
Q ss_pred EeCCCCC----CCCchhh--------hhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPD----FNRPEHR--------WRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~----~k~~h~k--------rRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|-.- .+.++.+ ..+ .+..+++++.++|||||.+++.|
T Consensus 336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t 389 (450)
T 2yxl_A 336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT 389 (450)
T ss_dssp EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8744210 0000000 011 13588999999999999999875
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-10 Score=109.59 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=81.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..++.+|+..+ ...++|+|+++.+ .+++++.|+.|+.++++|+..+.. .+ ++.||.|+
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~-~~---~~~FD~Il 180 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP-HF---SGFFDRIV 180 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH-HH---TTCEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh-hc---cccCCEEE
Confidence 467999999999999999998854 4799999987554 445556788999999999988732 22 67899999
Q ss_pred EeCCCC----CCCCchhhh--------h--hhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNP----DFNRPEHRW--------R--MVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP----~~k~~h~kr--------R--l~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++-|-. +.+..+.+. + -.+.++|+++.++|||||.|+.+|
T Consensus 181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 874410 111111111 0 123589999999999999999876
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.4e-11 Score=112.99 Aligned_cols=100 Identities=17% Similarity=0.083 Sum_probs=73.5
Q ss_pred CCCeEEEEecc------ccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh-hhhhccCCCcEe
Q 021567 125 AQPLVVDIGSG------NGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF-RSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcG------tG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll-~~~~~~~~~s~D 196 (311)
...+||||||| +|..++.++++ +|+.+++|||+++.+. ...+|++|+++|+.++- ...+...+++||
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFD 290 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-----VDELRIRTIQGDQNDAEFLDRIARRYGPFD 290 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-----GCBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-----hcCCCcEEEEecccccchhhhhhcccCCcc
Confidence 45799999999 78888888876 5899999999987652 23468999999998861 000101157999
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.|+.... .+ .. -...+|++++++|||||++++.
T Consensus 291 lVisdgs-H~-----~~---d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 291 IVIDDGS-HI-----NA---HVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp EEEECSC-CC-----HH---HHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEECCc-cc-----ch---hHHHHHHHHHHhcCCCeEEEEE
Confidence 9987532 11 00 1258899999999999999995
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-09 Score=103.67 Aligned_cols=126 Identities=24% Similarity=0.214 Sum_probs=84.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||+|||||.+++.+|+.. ..++|+|+++.+++.+ +.+++++ .+.++|+.+.+.. .++.||.|+++
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l~~----~~~~fD~Ii~d 287 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTLRG----LEGPFHHVLLD 287 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHHHT----CCCCEEEEEEC
T ss_pred CCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHHHH----hcCCCCEEEEC
Confidence 6899999999999999999974 4599999887665554 4456653 5779999887542 13449999987
Q ss_pred CCCCCCCCchhhhhh--hHHHHHHHHHhcccCCeEEEEEeCcH-----HHHHHHHHHHHhcCCCc
Q 021567 202 CPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 202 fpdP~~k~~h~krRl--~~~~~l~~i~rvLkpGG~l~~~tD~~-----~~~~~~~~~l~~~g~~~ 259 (311)
-| -+.+.+...... ...++++.+.++|+|||.+++.+.+. .+.+.+.+.+.+.|...
T Consensus 288 pP-~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~ 351 (393)
T 4dmg_A 288 PP-TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRL 351 (393)
T ss_dssp CC-CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCE
T ss_pred CC-cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeE
Confidence 22 222222211111 12588999999999999999765432 33334445556666543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-10 Score=108.25 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=73.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
...+|||||||+|.++..+++++|+.+++++|+ ..+++.+++ .++++|+.+|+.+- +| ++ |.|++...-
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~~----~p--~~--D~v~~~~vl 271 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA--FSGVEHLGGDMFDG----VP--KG--DAIFIKWIC 271 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--CTTEEEEECCTTTC----CC--CC--SEEEEESCG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh--cCCCEEEecCCCCC----CC--CC--CEEEEechh
Confidence 457999999999999999999999999999999 666555432 36899999998652 22 33 998877542
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+.... ....+|++++++|+|||++++.
T Consensus 272 h~~~~~------~~~~~l~~~~~~L~pgG~l~i~ 299 (368)
T 3reo_A 272 HDWSDE------HCLKLLKNCYAALPDHGKVIVA 299 (368)
T ss_dssp GGBCHH------HHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcCCHH------HHHHHHHHHHHHcCCCCEEEEE
Confidence 211110 1147899999999999999985
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.7e-10 Score=109.24 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=81.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..+..+|+..+ ...++|+|+++.++ +++++.|++|+.++++|+..+.. . .+++||.|+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-~---~~~~fD~Il 192 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-A---VPEMFDAIL 192 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-H---STTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-h---ccccCCEEE
Confidence 367999999999999999999864 57999999876544 44555688899999999988621 1 357899999
Q ss_pred EeCCC---------CCCCCchhh---hh--hhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN---------PDFNRPEHR---WR--MVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd---------P~~k~~h~k---rR--l~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|- |..+..... .+ -.+.++|+++.++|||||+|+++|
T Consensus 193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT 246 (479)
T 2frx_A 193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST 246 (479)
T ss_dssp EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 87331 211100000 01 123689999999999999999976
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.7e-11 Score=104.95 Aligned_cols=97 Identities=15% Similarity=0.065 Sum_probs=72.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||+|||+|.++..+|+. ..+++|+|+++.+++.+ +..++ +|+.++++|+.++. .+++||.|+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~ 149 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA------SFLKADVVF 149 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG------GGCCCSEEE
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc------ccCCCCEEE
Confidence 3679999999999999999987 48999999876655544 44566 58999999998862 367899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++.|-.++.. . ...+.+++++|+|||.+++
T Consensus 150 ~~~~~~~~~~--~------~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 150 LSPPWGGPDY--A------TAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp ECCCCSSGGG--G------GSSSBCTTTSCSSCHHHHH
T ss_pred ECCCcCCcch--h------hhHHHHHHhhcCCcceeHH
Confidence 8744332111 1 1245678899999998655
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.3e-11 Score=107.98 Aligned_cols=97 Identities=15% Similarity=0.046 Sum_probs=62.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEE-EEccccchhhhhhcc---CCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYF-IATNATSTFRSIVAS---YPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f-~~~Da~~ll~~~~~~---~~~s~D~V~i 200 (311)
.+.+|||||||||.++..++++. ..+++|+|+++.+++.+.++. .++.. ...++..+....++. ...++|.+++
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~ 114 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSD-ERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFI 114 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTC-TTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSS
T ss_pred CCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhC-ccccccccceEEEeCHhHcCcCCCCEEEEEEEhh
Confidence 45699999999999999999883 359999999877666654432 22222 222332221111110 1234444332
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++ ..++++++|+|||||.+++.+
T Consensus 115 ~l----------------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 115 SL----------------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CG----------------GGTHHHHHHHSCTTCEEEEEE
T ss_pred hH----------------HHHHHHHHHhccCCCEEEEEE
Confidence 21 378999999999999999863
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=109.89 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=88.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
...+|||+|||+|.+++.++++. +..+++|+|+++.+.+.+ .++.++++|+.+. + .++.||.|+.|
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----~~~~~~~~D~~~~-----~-~~~~fD~Ii~N-- 105 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----PWAEGILADFLLW-----E-PGEAFDLILGN-- 105 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----TTEEEEESCGGGC-----C-CSSCEEEEEEC--
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----CCCcEEeCChhhc-----C-ccCCCCEEEEC--
Confidence 35699999999999999999886 678999999987666544 5799999998765 1 35789999998
Q ss_pred CCCCCCch----------hhhhh-------------hHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHhcC
Q 021567 204 NPDFNRPE----------HRWRM-------------VQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYG 256 (311)
Q Consensus 204 dP~~k~~h----------~krRl-------------~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~~g 256 (311)
.|+..... ..+.. ....|++.+.++|+|||.+.+.+... .+.+.+.+.+.+.+
T Consensus 106 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~ 185 (421)
T 2ih2_A 106 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREG 185 (421)
T ss_dssp CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred cCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcC
Confidence 45543221 11111 12378999999999999999987543 24566777777766
Q ss_pred C
Q 021567 257 K 257 (311)
Q Consensus 257 ~ 257 (311)
.
T Consensus 186 ~ 186 (421)
T 2ih2_A 186 K 186 (421)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=107.89 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=69.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEE-EEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~-f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.+|||||||||.++..++++ +..+|+|||++..+++.+.++. .++. +...|+..+....+ +..+||.+++...
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~-~rv~~~~~~ni~~l~~~~l--~~~~fD~v~~d~s 160 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQD-DRVRSMEQYNFRYAEPVDF--TEGLPSFASIDVS 160 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTC-TTEEEECSCCGGGCCGGGC--TTCCCSEEEECCS
T ss_pred cccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-cccceecccCceecchhhC--CCCCCCEEEEEee
Confidence 4579999999999999999987 4569999999877666543332 3343 33456655422212 3446999887644
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.+. ..+|.+++|+|+|||.+++.
T Consensus 161 f~sl-----------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 161 FISL-----------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp SSCG-----------GGTHHHHHHHSCTTCEEEEE
T ss_pred HhhH-----------HHHHHHHHHHcCcCCEEEEE
Confidence 2211 47899999999999999885
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.7e-10 Score=104.00 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=74.5
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+|||||||+|.++..+++++|+.+++++|+ .+.+.+++...++ ++++++.+|+.+. + +..+|.|++..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---~~~~D~v~~~~ 241 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE----V---PSNGDIYLLSR 241 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC----C---CSSCSEEEEES
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC----C---CCCCCEEEEch
Confidence 7899999999999999999999999999997 2334444333343 5799999998652 2 35799998874
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.-..+.+ .....++++++++|+|||++++..
T Consensus 242 vl~~~~~------~~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 242 IIGDLDE------AASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp CGGGCCH------HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hccCCCH------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4221111 011489999999999999999863
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.7e-10 Score=97.38 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=70.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
....|||||||+|.+++.++...|+.+|+|+|+++.+++. +...|.. |+++ +|.... . +++.+|+|.
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~----~--~~~~~DvVL 120 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD----V--YKGTYDVVF 120 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH----H--TTSEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc----C--CCCCcChhh
Confidence 3578999999999999999999999999999987665554 4456776 6777 554332 1 478999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
.+-. -|+-+ -. +..+.++.+.|+|||.|+-
T Consensus 121 a~k~------LHlL~-~~-~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 121 LLKM------LPVLK-QQ-DVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp EETC------HHHHH-HT-TCCHHHHHHTCEEEEEEEE
T ss_pred HhhH------HHhhh-hh-HHHHHHHHHHhCCCCEEEE
Confidence 7622 22211 00 2445589999999998864
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-09 Score=102.39 Aligned_cols=111 Identities=11% Similarity=0.199 Sum_probs=81.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|..+..+++..++..++|+|+++ .+.+++++.++ ++.++++|+.++. ..+ +++.||.|++
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~-~~~--~~~~fD~Vl~ 321 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPS-QWC--GEQQFDRILL 321 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTH-HHH--TTCCEEEEEE
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhch-hhc--ccCCCCEEEE
Confidence 46799999999999999999998888999999754 45555555676 5799999998863 223 3578999998
Q ss_pred eCCCCCC----CCchhhh----------hhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDF----NRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~----k~~h~kr----------Rl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+-|-.-. +..+.++ .-.+..+++++.+.|||||.++++|
T Consensus 322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst 374 (429)
T 1sqg_A 322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 374 (429)
T ss_dssp ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7542110 0000000 0123688999999999999999976
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-10 Score=106.23 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=73.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
...+|||||||+|.++..+++++|+.+++++|+ ..+++.+++ .++++|+.+|+.+- +| ++ |.|++...-
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~D~~~~----~p--~~--D~v~~~~vl 269 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ--FPGVTHVGGDMFKE----VP--SG--DTILMKWIL 269 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--CTTEEEEECCTTTC----CC--CC--SEEEEESCG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh--cCCeEEEeCCcCCC----CC--CC--CEEEehHHh
Confidence 457999999999999999999999999999999 555554432 36899999998652 22 34 999876542
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
....+. ....+|++++++|+|||++++.
T Consensus 270 h~~~d~------~~~~~L~~~~~~L~pgG~l~i~ 297 (364)
T 3p9c_A 270 HDWSDQ------HCATLLKNCYDALPAHGKVVLV 297 (364)
T ss_dssp GGSCHH------HHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccCCHH------HHHHHHHHHHHHcCCCCEEEEE
Confidence 211110 1147899999999999999985
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=107.86 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=80.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..++.+|+..++ ..++|+|+++.++ +++++.|+. +.++++|+.++.. . .+++||.|+
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~-~---~~~~FD~Il 175 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAE-A---FGTYFHRVL 175 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHH-H---HCSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhh-h---ccccCCEEE
Confidence 4679999999999999999998654 7999999876544 445556887 9999999988732 1 267899999
Q ss_pred EeCCC---------CCCCCc---hhhhh--hhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN---------PDFNRP---EHRWR--MVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd---------P~~k~~---h~krR--l~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++-|- |..+.. ..-.+ -.+.++|+++.++|||||+|+++|
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 87442 211100 00001 123689999999999999999875
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.1e-10 Score=104.87 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=73.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH--HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL--QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a--~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+..+|||||||+|.++..+++++|+.+++++|+..... +. +..+. ++++|+.+|+.+. + + ++|.|++.
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~-~~~~~~~~~~~~v~~~~~d~~~~----~--p--~~D~v~~~ 254 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA-RHRLDAPDVAGRWKVVEGDFLRE----V--P--HADVHVLK 254 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT-TCCCCCGGGTTSEEEEECCTTTC----C--C--CCSEEEEE
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh-cccccccCCCCCeEEEecCCCCC----C--C--CCcEEEEe
Confidence 46799999999999999999999999999999854433 21 11232 4699999998622 2 2 89999887
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..-....+ .....+|++++++|||||+|++..
T Consensus 255 ~vlh~~~d------~~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 255 RILHNWGD------EDSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp SCGGGSCH------HHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred hhccCCCH------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54221111 011489999999999999999854
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-10 Score=106.25 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=74.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
...+|||||||+|.++..+++++|+..++++|+ ..+++.+++ .++++++.+|+.+- + ++ +|.|++...-
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~~----~--~~--~D~v~~~~~l 277 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP--LSGIEHVGGDMFAS----V--PQ--GDAMILKAVC 277 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--CTTEEEEECCTTTC----C--CC--EEEEEEESSG
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh--cCCCEEEeCCcccC----C--CC--CCEEEEeccc
Confidence 457999999999999999999999999999999 666665432 46899999998652 2 23 8999987542
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+..+ .....+|++++++|+|||++++.
T Consensus 278 h~~~d------~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 278 HNWSD------EKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp GGSCH------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCH------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 21111 01138999999999999999986
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-09 Score=97.30 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=82.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch-HHHHHHHHHH---------cCC-----CcEEEEEccccchhhhhhc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-VTHCRDSLQL---------SGI-----TNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi-~~~a~~~a~~---------~~~-----~Nv~f~~~Da~~ll~~~~~ 189 (311)
.+.+|||||||+|.+++.+++.. ..+++|+|+ +..+++.+++ .++ +|+.+...|..+......+
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 35789999999999999999863 358999999 7776665543 233 2688886664442221111
Q ss_pred c-CCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhccc---C--CeEEEEEeCcHH-----HHHHHHHHHHhcC-C
Q 021567 190 S-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV---H--DGKVFLQSDIEE-----VMLRMKQQFLEYG-K 257 (311)
Q Consensus 190 ~-~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLk---p--GG~l~~~tD~~~-----~~~~~~~~l~~~g-~ 257 (311)
. .++.||.|++..+ ..... ....+++.+.++|+ | ||.+++...... ......+.+.+.| +
T Consensus 158 ~~~~~~fD~Ii~~dv--l~~~~------~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f 229 (281)
T 3bzb_A 158 CTGLQRFQVVLLADL--LSFHQ------AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGAL 229 (281)
T ss_dssp HHSCSSBSEEEEESC--CSCGG------GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTE
T ss_pred hccCCCCCEEEEeCc--ccChH------HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCE
Confidence 0 3578999987532 21111 12589999999999 9 998877544321 1234556677888 6
Q ss_pred Cceee
Q 021567 258 GKLVL 262 (311)
Q Consensus 258 ~~~~~ 262 (311)
....+
T Consensus 230 ~v~~~ 234 (281)
T 3bzb_A 230 IAEPW 234 (281)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 54433
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.2e-09 Score=103.28 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=86.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|||+|.+++.+|+. ..+++|+|+++.+++.+ +.++++|+.|+++|+.+.+.. ++..++++|.|++
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~-~~~~~~~fD~Vv~ 362 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-QPWAKNGFDKVLL 362 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-SGGGTTCCSEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-hhhhcCCCCEEEE
Confidence 4578999999999999999988 67999999876655544 456778999999999885332 1224678999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
+-| . .. . .++++.+.+ ++|++.++++++...+.... ..+.+.|+....
T Consensus 363 dPP--r--~g------~-~~~~~~l~~-~~p~~ivyvsc~p~tlard~-~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 363 DPA--R--AG------A-AGVMQQIIK-LEPIRIVYVSCNPATLARDS-EALLKAGYTIAR 410 (433)
T ss_dssp CCC--T--TC------C-HHHHHHHHH-HCCSEEEEEESCHHHHHHHH-HHHHHTTCEEEE
T ss_pred CCC--C--cc------H-HHHHHHHHh-cCCCeEEEEECChHHHHhhH-HHHHHCCcEEEE
Confidence 622 1 11 1 245555544 79999999987766555554 556777876544
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-10 Score=106.00 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=69.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHH--HHcCCCcEEEEEc-cccchhhhhhccCCCcEeE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSL--QLSGITNGYFIAT-NATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a--~~~~~~Nv~f~~~-Da~~ll~~~~~~~~~s~D~ 197 (311)
++.+|||||||+|.++..+|++ ..|+|||+ +...+..+ +..+.+++.|+++ |+..+ ++.+||+
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l-------~~~~fD~ 151 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI-------PPERCDT 151 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS-------CCCCCSE
T ss_pred CCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccC-------CcCCCCE
Confidence 3579999999999999999987 47999998 33211111 1112367999999 87765 3568999
Q ss_pred EEEeCCCCCCCCchhhhhhh-HHHHHHHHHhcccCCeEEEEEe
Q 021567 198 VSIQCPNPDFNRPEHRWRMV-QRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~-~~~~l~~i~rvLkpGG~l~~~t 239 (311)
|+..++.. ..++-.... ....|+.+.++|||||.|++.+
T Consensus 152 V~sd~~~~---~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 152 LLCDIGES---SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp EEECCCCC---CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEECCccc---cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99875432 111100000 0157889999999999999865
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9.6e-10 Score=104.07 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=72.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...+|||||||+|.++..+++++|+.+++..|+ .+.+.+.+...+.++|+|+.+|.... + ....|.+++.
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~-----~--~~~~D~~~~~ 251 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD-----P--LPEADLYILA 251 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTS-----C--CCCCSEEEEE
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccC-----C--CCCceEEEee
Confidence 357899999999999999999999999999996 33344433334467899999997543 2 2345888876
Q ss_pred CCCC-CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP-~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..-. |+ +. ...++|+++++.|+|||++++.
T Consensus 252 ~vlh~~~-d~------~~~~iL~~~~~al~pgg~lli~ 282 (353)
T 4a6d_A 252 RVLHDWA-DG------KCSHLLERIYHTCKPGGGILVI 282 (353)
T ss_dssp SSGGGSC-HH------HHHHHHHHHHHHCCTTCEEEEE
T ss_pred eecccCC-HH------HHHHHHHHHHhhCCCCCEEEEE
Confidence 4311 21 00 1147899999999999999985
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=111.20 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=88.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC--cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||+|||||.+++.+|+.. ..+++++|+++.+++.+ +.++++ ++.++++|+.+.++. .+++||.|
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~----~~~~fD~I 613 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE----ANEQFDLI 613 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH----CCCCEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh----cCCCccEE
Confidence 36799999999999999999864 34799999987665554 456765 799999999986442 46789999
Q ss_pred EEeCCCCCCCC-chh----hhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 199 SIQCPNPDFNR-PEH----RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 199 ~i~fpdP~~k~-~h~----krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
+++-| .+.. +.. .-.-...+++..+.++|+|||.|++++....+.. -.+.+.+.|+.
T Consensus 614 i~DPP--~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~-~~~~l~~~g~~ 675 (703)
T 3v97_A 614 FIDPP--TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRM-DLDGLAKLGLK 675 (703)
T ss_dssp EECCC--SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCC-CHHHHHHTTEE
T ss_pred EECCc--cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc-CHHHHHHcCCc
Confidence 88732 2211 100 0011236889999999999999999886633222 24556677654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.2e-10 Score=104.29 Aligned_cols=119 Identities=8% Similarity=0.036 Sum_probs=80.4
Q ss_pred CCCeEEEEec------cccHHHHHHHhhCC-CCeEEEEchHHHHHHHHHHcCCCcEEE-EEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGS------GNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGc------GtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~~~~~~Nv~f-~~~Da~~ll~~~~~~~~~s~D 196 (311)
++.+|||||| |+|. ..+++..| +..++|+|+++. ++|+.+ +++|+.++ + .+++||
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---------v~~v~~~i~gD~~~~-----~-~~~~fD 125 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---------VSDADSTLIGDCATV-----H-TANKWD 125 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---------BCSSSEEEESCGGGC-----C-CSSCEE
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---------CCCCEEEEECccccC-----C-ccCccc
Confidence 4679999999 4577 45566666 689999999875 357889 99999875 2 247899
Q ss_pred EEEEeCCCCCCC--Cc-hhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 197 LVSIQCPNPDFN--RP-EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 197 ~V~i~fpdP~~k--~~-h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
.|+.+++.++.. .. +.+.....+.+++++.++|||||.|++..-.......+.+.+++.|+..+
T Consensus 126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v 192 (290)
T 2xyq_A 126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTA 192 (290)
T ss_dssp EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEE
T ss_pred EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEE
Confidence 999986544321 00 11111122588999999999999999965222223356667777765433
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=103.09 Aligned_cols=107 Identities=15% Similarity=0.229 Sum_probs=80.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||+|||+|.+++. |+ ...+++|+|+++.+++. ++.+++ +|+.++++|+.+.+ +.+|.|+
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--------~~fD~Vi 263 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--------VKGNRVI 263 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--------CCEEEEE
T ss_pred CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--------CCCcEEE
Confidence 467999999999999999 87 37799999987655554 445676 58999999998761 6899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~ 255 (311)
++.| .. . ..+++.+.++|+|||.+++.+-... .+...+.+.+.
T Consensus 264 ~dpP--~~----~------~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~~ 306 (336)
T 2yx1_A 264 MNLP--KF----A------HKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEKK 306 (336)
T ss_dssp ECCT--TT----G------GGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHHH
T ss_pred ECCc--Hh----H------HHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHHh
Confidence 8632 11 1 2788999999999999988653333 44555555554
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=92.18 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=79.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+ +++|+++.+++.++++...++.++++|+.++.. .+.++++||.|+.++.-
T Consensus 12 ~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~--~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 12 AGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQ--SAHKESSFDIILSGLVP 73 (176)
T ss_dssp TTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGG--GCCCSSCEEEEEECCST
T ss_pred CCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCcc--ccCCCCCEeEEEECChh
Confidence 468999999996 249999999988876644579999999988611 01257899999987654
Q ss_pred CCC-CCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH------H---HHHHHHHHHhcCC
Q 021567 205 PDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE------V---MLRMKQQFLEYGK 257 (311)
Q Consensus 205 P~~-k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~------~---~~~~~~~l~~~g~ 257 (311)
.+. .+. ..++++++|+|||||.|++...... + .+++.+.+++.|+
T Consensus 74 ~~~~~~~--------~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--------AEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--------HHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--------HHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 443 221 4899999999999999999532110 1 4567788899998
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.2e-10 Score=104.06 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..+|||||||+|.++..+++++|+.+++|+|+ ..+++.+++ .+++.|+.+|+.+- +| .+|.|++...-.
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~~----~p----~~D~v~~~~~lh 257 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG--SNNLTYVGGDMFTS----IP----NADAVLLKYILH 257 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--BTTEEEEECCTTTC----CC----CCSEEEEESCGG
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc--CCCcEEEeccccCC----CC----CccEEEeehhhc
Confidence 57899999999999999999999999999999 777766543 35799999998542 22 289998875422
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccC---CeEEEEE
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVH---DGKVFLQ 238 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkp---GG~l~~~ 238 (311)
...+ .....+|++++++|+| ||++++.
T Consensus 258 ~~~d------~~~~~~l~~~~~~L~p~~~gG~l~i~ 287 (352)
T 1fp2_A 258 NWTD------KDCLRILKKCKEAVTNDGKRGKVTII 287 (352)
T ss_dssp GSCH------HHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred cCCH------HHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 1111 1113899999999999 9999885
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-09 Score=108.35 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=72.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||||||+|.+++.+|+ .+..+++|+|+++ .|.++++.+++ ++++++++|+.++ + .++.||.|+.
T Consensus 158 ~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~-----~-~~~~fD~Ivs 230 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-----S-LPEQVDIIIS 230 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTC-----C-CSSCEEEEEC
T ss_pred CCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhC-----c-cCCCeEEEEE
Confidence 357999999999999999987 4677999999876 33444455676 6899999999875 2 2468999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+.+. ++-...-....+.+++++|||||.+++
T Consensus 231 ~~~~------~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 231 EPMG------YMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CCCH------HHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eCch------HhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 6321 110000113566788999999999985
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=100.37 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=75.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|.+++.+|++. ..+|+++|+++.|. ++++.+++.+ +.++++|+.++. ..+.+|.|+
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~------~~~~~D~Vi 197 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------GENIADRIL 197 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------CCSCEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc------cccCCCEEE
Confidence 47899999999999999999874 46899999876554 4555677754 999999998762 367899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++.|.- . .+|+..+.++|||||.+++.
T Consensus 198 ~~~p~~---~---------~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 198 MGYVVR---T---------HEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp ECCCSS---G---------GGGHHHHHHHEEEEEEEEEE
T ss_pred ECCCCc---H---------HHHHHHHHHHcCCCCEEEEE
Confidence 884411 1 36888899999999999864
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-09 Score=97.43 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=80.6
Q ss_pred CCeEEEEeccc--cHHHHHHHh-hCCCCeEEEEchHHHHHHHHHHc----CCCcEEEEEccccchhhhhhccC--CCcEe
Q 021567 126 QPLVVDIGSGN--GLFLLGMAR-KRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASY--PGKLI 196 (311)
Q Consensus 126 ~~~vLDIGcGt--G~~~~~lA~-~~p~~~vvGiDi~~~a~~~a~~~----~~~Nv~f~~~Da~~ll~~~~~~~--~~s~D 196 (311)
...+||||||+ +.++..+++ ..|+.+|+|+|.+..++..+++. +..++.|+++|+.+. ..+++.+ ...+|
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~-~~~l~~~~~~~~~D 157 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP-ASILDAPELRDTLD 157 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH-HHHHTCHHHHTTCC
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh-hhhhcccccccccC
Confidence 46899999997 556666665 48999999999888777666532 234799999999886 2111100 12233
Q ss_pred -----EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe---Cc-HHHHHHHHHHHHhcCC
Q 021567 197 -----LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DI-EEVMLRMKQQFLEYGK 257 (311)
Q Consensus 197 -----~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t---D~-~~~~~~~~~~l~~~g~ 257 (311)
.|+++..-.|..+... -..+++++++.|+|||+|.+.+ |. ....+.+.+.....|.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~-----p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~ 222 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDD-----AVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNM 222 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGC-----HHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTC
T ss_pred cCCcchHHhhhhHhcCCchhh-----HHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCC
Confidence 3555544333322110 0378999999999999999873 22 2334555555555553
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.3e-09 Score=100.76 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=76.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|||+|.+++.+|+. ..+++|+|+++.+++.+ +.++++ +.|+++|+.+++ +..+|.|++
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~-------~~~fD~Vv~ 359 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS-------VKGFDTVIV 359 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC-------CTTCSEEEE
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC-------ccCCCEEEE
Confidence 4679999999999999999987 46999999876655544 445776 999999998862 127999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHH
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK 249 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~ 249 (311)
+-| . .. ..+.+++.+. .|+|||.++++++...+...+.
T Consensus 360 dPP--r--~g------~~~~~~~~l~-~l~p~givyvsc~p~tlarDl~ 397 (425)
T 2jjq_A 360 DPP--R--AG------LHPRLVKRLN-REKPGVIVYVSCNPETFARDVK 397 (425)
T ss_dssp CCC--T--TC------SCHHHHHHHH-HHCCSEEEEEESCHHHHHHHHH
T ss_pred cCC--c--cc------hHHHHHHHHH-hcCCCcEEEEECChHHHHhHHh
Confidence 522 1 11 1135677665 4899999999887665554443
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.2e-09 Score=100.90 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||||.+++..|+.. ..+|+|||. ...|.+.++.+++. +|.++++|++++ . .+..+|+|+..
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~-----~-lpe~~DvivsE 156 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETV-----E-LPEQVDAIVSE 156 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-----C-CSSCEEEEECC
T ss_pred CCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeee-----c-CCccccEEEee
Confidence 5789999999999988777764 358999995 45677777788875 599999999887 2 24789999764
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
..+... .+ .-.-+.++....|.|||||.++-
T Consensus 157 ~~~~~l---~~--e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 157 WMGYGL---LH--ESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCBTTB---TT--TCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccccc---cc--cchhhhHHHHHHhhCCCCceECC
Confidence 222110 00 01225788888999999998763
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-09 Score=97.19 Aligned_cols=126 Identities=15% Similarity=0.123 Sum_probs=84.5
Q ss_pred CCCeEEEEeccccHHHHHHHhh-------CCC-----CeEEEEchHH---H---------------HHHHHHH-------
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-------RKD-----LNFLGLELVT---H---------------CRDSLQL------- 167 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-------~p~-----~~vvGiDi~~---~---------------a~~~a~~------- 167 (311)
...+|||||||+|..++.+++. .|+ .+|+++|..+ . +.+.++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3578999999999999887664 564 5899999421 2 1222221
Q ss_pred -------cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 168 -------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 168 -------~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
.+..|++++.+|+.+.++..-......||.|++ |+|..++++ ++-++++++.++++|+|||+|...|-
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~ifl---D~fsp~~~p--~lw~~~~l~~l~~~L~pGG~l~tysa 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFL---DGFAPAKNP--DMWTQNLFNAMARLARPGGTLATFTS 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEE---CSSCTTTCG--GGCCHHHHHHHHHHEEEEEEEEESCC
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEE---CCCCcccCh--hhcCHHHHHHHHHHcCCCcEEEEEeC
Confidence 123478999999999755321000137999865 666544444 45568999999999999999986443
Q ss_pred cHHHHHHHHHHHHhcCCCc
Q 021567 241 IEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 241 ~~~~~~~~~~~l~~~g~~~ 259 (311)
.. .+.+.+.+.|+..
T Consensus 215 a~----~vrr~L~~aGF~v 229 (257)
T 2qy6_A 215 AG----FVRRGLQEAGFTM 229 (257)
T ss_dssp BH----HHHHHHHHHTEEE
T ss_pred CH----HHHHHHHHCCCEE
Confidence 32 4556667777753
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.2e-09 Score=98.59 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=77.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHc---------------CCCcEEEEEccccchhhh
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLS---------------GITNGYFIATNATSTFRS 186 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~---------------~~~Nv~f~~~Da~~ll~~ 186 (311)
+.+|||+|||+|.+++.+|++.+...++++|+++.+++ +++.+ +++|+.++++|+..++..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 57899999999999999999977788999998765544 44456 777799999999887542
Q ss_pred hhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 187 IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 187 ~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
....||.|++ ||... ...+++.+.+.|+|||.+++..
T Consensus 128 ----~~~~fD~I~l---DP~~~---------~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 ----RHRYFHFIDL---DPFGS---------PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp ----STTCEEEEEE---CCSSC---------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----ccCCCCEEEe---CCCCC---------HHHHHHHHHHhcCCCCEEEEEe
Confidence 1457999985 44211 1388999999999999998864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-09 Score=98.71 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=57.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+++.. .+++|+|+++.+++.++++ +. +|++++++|+.++ + ..++|.|+
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~-----~--~~~fD~vv 98 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-----D--LPFFDTCV 98 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-----C--CCCCSEEE
T ss_pred CCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc-----c--chhhcEEE
Confidence 46789999999999999999984 5899999987776666532 33 5899999999876 2 22689999
Q ss_pred EeCCCCC
Q 021567 200 IQCPNPD 206 (311)
Q Consensus 200 i~fpdP~ 206 (311)
.+.|-.|
T Consensus 99 ~nlpy~~ 105 (285)
T 1zq9_A 99 ANLPYQI 105 (285)
T ss_dssp EECCGGG
T ss_pred EecCccc
Confidence 9876443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-09 Score=98.40 Aligned_cols=126 Identities=10% Similarity=0.065 Sum_probs=86.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC-----CeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD-----LNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~-----~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
...+|||+|||+|.++..+++..+. .+++|+|++..+.+.++ ..++ ++.++++|+... ..+..+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~------~~~~~f 202 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLAN------LLVDPV 202 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSC------CCCCCE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCc------cccCCc
Confidence 3578999999999999999988654 78999998766555543 3466 789999998653 135789
Q ss_pred eEEEEeCCCCCCCCchhhhh----------hhHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHhcCC
Q 021567 196 ILVSIQCPNPDFNRPEHRWR----------MVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGK 257 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krR----------l~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~~g~ 257 (311)
|.|+.+-|--+.......++ .....|++.+.+.|+|||++.+.+.+. .....+.+.+.+.++
T Consensus 203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH 278 (344)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence 99999844111111000000 012368999999999999999986211 124566667766654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-08 Score=95.84 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=70.8
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccC----------
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASY---------- 191 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~---------- 191 (311)
+..|||+|||+|.+++.+|+. ..+|+|+|+++.|++ +++.++++|++|+++|+.++++......
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 468999999999999999986 358999998765554 4455678899999999998754321000
Q ss_pred -CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHHHHHHH
Q 021567 192 -PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMK 249 (311)
Q Consensus 192 -~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~~~~~~ 249 (311)
+..+|.|++. .|. . .+.+++.+.|+++|.++.. ++...+.....
T Consensus 292 ~~~~fD~Vv~d--PPr--~----------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~ 337 (369)
T 3bt7_A 292 KSYQCETIFVD--PPR--S----------GLDSETEKMVQAYPRILYISCNPETLCKNLE 337 (369)
T ss_dssp GGCCEEEEEEC--CCT--T----------CCCHHHHHHHTTSSEEEEEESCHHHHHHHHH
T ss_pred ccCCCCEEEEC--cCc--c----------ccHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence 1379999875 221 1 1223344555666666554 44444444443
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.4e-09 Score=99.98 Aligned_cols=96 Identities=18% Similarity=0.191 Sum_probs=73.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..+|||||||+|.++..+++++|+.+++++|+ ..+++.+++ .+++.++.+|+.+- + + .+|.|++...-.
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~~----~--~--~~D~v~~~~vlh 262 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG--NENLNFVGGDMFKS----I--P--SADAVLLKWVLH 262 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC--CSSEEEEECCTTTC----C--C--CCSEEEEESCGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc--CCCcEEEeCccCCC----C--C--CceEEEEccccc
Confidence 47899999999999999999999999999998 455554432 46799999998652 2 2 389998875422
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccC---CeEEEEE
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVH---DGKVFLQ 238 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkp---GG~l~~~ 238 (311)
+..+ .....+|++++++|+| ||++++.
T Consensus 263 ~~~d------~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 263 DWND------EQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp GSCH------HHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred CCCH------HHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 1111 0113899999999999 9999885
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-08 Score=95.67 Aligned_cols=112 Identities=17% Similarity=0.216 Sum_probs=77.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC--------------------------------------CCeEEEEchHHHHHH---
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK--------------------------------------DLNFLGLELVTHCRD--- 163 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p--------------------------------------~~~vvGiDi~~~a~~--- 163 (311)
.+..+||.|||+|.+++.+|.... ..+++|+|++..+++
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 357899999999999999987632 257999998665544
Q ss_pred -HHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccC--CeEEEEEe
Q 021567 164 -SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH--DGKVFLQS 239 (311)
Q Consensus 164 -~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkp--GG~l~~~t 239 (311)
+++.+++. +++|.++|+.++ + .+.++|.|+++ .|+......+..+ ..+.+++.++|++ ||.+++.|
T Consensus 275 ~Na~~~gl~~~i~~~~~D~~~l-----~-~~~~~D~Iv~N--PPyg~rl~~~~~l--~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 275 ENAEIAGVDEYIEFNVGDATQF-----K-SEDEFGFIITN--PPYGERLEDKDSV--KQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp HHHHHHTCGGGEEEEECCGGGC-----C-CSCBSCEEEEC--CCCCCSHHHHHHH--HHHHHHHHHHHHTSBSCEEEEEE
T ss_pred HHHHHcCCCCceEEEECChhhc-----C-cCCCCcEEEEC--CCCcCccCCHHHH--HHHHHHHHHHHhhCCCCEEEEEE
Confidence 44556775 799999999886 2 24589999988 3443221111111 3566666667766 89998888
Q ss_pred CcHHHHH
Q 021567 240 DIEEVML 246 (311)
Q Consensus 240 D~~~~~~ 246 (311)
.+..+..
T Consensus 345 ~~~~l~~ 351 (385)
T 3ldu_A 345 SYEDFEY 351 (385)
T ss_dssp SCTTHHH
T ss_pred CCHHHHH
Confidence 7766543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=95.40 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=76.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC--------------------------------------CeEEEEchHHHHH----
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD--------------------------------------LNFLGLELVTHCR---- 162 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~--------------------------------------~~vvGiDi~~~a~---- 162 (311)
.+..+||.+||+|.+++..|....+ ..++|+|++..++
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 3568999999999999998875333 5699999866554
Q ss_pred HHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccC--CeEEEEEe
Q 021567 163 DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH--DGKVFLQS 239 (311)
Q Consensus 163 ~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkp--GG~l~~~t 239 (311)
++++..|+. +++|+++|+.++ + .+.++|.|+++ .|+-.....+..+ ..+.+++.+.||+ ||.+++.|
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~~~-----~-~~~~fD~Iv~N--PPYg~rl~~~~~l--~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVADF-----Q-TEDEYGVVVAN--PPYGERLEDEEAV--RQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGGGC-----C-CCCCSCEEEEC--CCCCCSHHHHHHH--HHHHHHHHHHHHTCTTCEEEEEE
T ss_pred HHHHHcCCCCceEEEECChHhC-----C-CCCCCCEEEEC--CCCccccCCchhH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 445556775 599999999886 2 24589999988 3432211111111 3455555566655 99999888
Q ss_pred CcHHHHH
Q 021567 240 DIEEVML 246 (311)
Q Consensus 240 D~~~~~~ 246 (311)
.+..+..
T Consensus 351 ~~~~l~~ 357 (393)
T 3k0b_A 351 SYELFEE 357 (393)
T ss_dssp CCTTHHH
T ss_pred CCHHHHH
Confidence 7766544
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.7e-08 Score=93.89 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=77.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC--------------------------------------CeEEEEchHHHHH----
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD--------------------------------------LNFLGLELVTHCR---- 162 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~--------------------------------------~~vvGiDi~~~a~---- 162 (311)
.+..+||.+||+|.+++..|....+ ..++|+|++..++
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 3578999999999999998875333 5699999865554
Q ss_pred HHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccC--CeEEEEEe
Q 021567 163 DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH--DGKVFLQS 239 (311)
Q Consensus 163 ~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkp--GG~l~~~t 239 (311)
++++..|+. ++.|+++|+.++ + .+.++|.|++| .|+-.....+.. -..+..++.+.||+ ||.+++.|
T Consensus 274 ~Na~~~gl~~~I~~~~~D~~~l-----~-~~~~fD~Iv~N--PPYG~rl~~~~~--l~~ly~~lg~~lk~~~g~~~~iit 343 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQMRLQDF-----K-TNKINGVLISN--PPYGERLLDDKA--VDILYNEMGETFAPLKTWSQFILT 343 (384)
T ss_dssp HHHHHTTCTTTEEEEECCGGGC-----C-CCCCSCEEEEC--CCCTTTTSCHHH--HHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHcCCCCceEEEECChHHC-----C-ccCCcCEEEEC--CchhhccCCHHH--HHHHHHHHHHHHhhCCCcEEEEEE
Confidence 455556776 499999999886 2 24589999988 343221111111 13566666666665 99999988
Q ss_pred CcHHHHH
Q 021567 240 DIEEVML 246 (311)
Q Consensus 240 D~~~~~~ 246 (311)
.+.++..
T Consensus 344 ~~~~l~~ 350 (384)
T 3ldg_A 344 NDTDFEQ 350 (384)
T ss_dssp SCTTHHH
T ss_pred CCHHHHH
Confidence 7766543
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-07 Score=87.98 Aligned_cols=112 Identities=9% Similarity=0.002 Sum_probs=76.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..++.+|+. .+...++|+|+++.++ +++++.+++|+.++++|+.++... .+ ....||.|+
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~-~~-~~~~fD~Vl 179 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS-DP-RYHEVHYIL 179 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT-CG-GGTTEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcc-cc-ccCCCCEEE
Confidence 4679999999999999999987 4568999999865544 445556888999999999876211 00 015799998
Q ss_pred EeCCC---------CCCCCc-h-hhhh-----hhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN---------PDFNRP-E-HRWR-----MVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd---------P~~k~~-h-~krR-----l~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|- |..+.. + ...+ ..+.++|+.+.+.|+ ||+++.+|
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT 234 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST 234 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence 75331 110000 0 0011 123578999998887 99988875
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.1e-08 Score=93.33 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=78.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHHHH----HHHHHcCCCc--EEEEEccccchhh-hhhccCCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCR----DSLQLSGITN--GYFIATNATSTFR-SIVASYPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~a~----~~a~~~~~~N--v~f~~~Da~~ll~-~~~~~~~~s~D~ 197 (311)
+.+|||++||+|.+++.+|++.++ ..++++|+++.+. ++++.++++| +.++++|+.+++. . ....||.
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~----~~~~fD~ 128 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE----WGFGFDY 128 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC----CSSCEEE
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh----hCCCCcE
Confidence 578999999999999999997554 6899999876554 4555678876 9999999988754 3 2467999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
|++. |. .. ...+++.+.+.|+|||.+++....
T Consensus 129 V~lD---P~-g~--------~~~~l~~a~~~Lk~gGll~~t~t~ 160 (392)
T 3axs_A 129 VDLD---PF-GT--------PVPFIESVALSMKRGGILSLTATD 160 (392)
T ss_dssp EEEC---CS-SC--------CHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEC---CC-cC--------HHHHHHHHHHHhCCCCEEEEEecc
Confidence 9764 42 11 136899999999999999987543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-08 Score=92.62 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=53.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..++++ ..+++|+|+++.+++.++ ..+.+|+.++++|+..+ + ..++|.|+.
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~-----~--~~~~D~Vv~ 112 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT-----V--FPKFDVCTA 112 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS-----C--CCCCSEEEE
T ss_pred CcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC-----C--cccCCEEEE
Confidence 4678999999999999999987 469999998766655554 34668999999999876 2 347899999
Q ss_pred eCCCC
Q 021567 201 QCPNP 205 (311)
Q Consensus 201 ~fpdP 205 (311)
+.|-.
T Consensus 113 n~py~ 117 (299)
T 2h1r_A 113 NIPYK 117 (299)
T ss_dssp ECCGG
T ss_pred cCCcc
Confidence 86643
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.1e-08 Score=97.94 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=70.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||||||+|.++..||+. ++.|+|||+++.+++.|+ +.+..|+.|.+++++++.. +..+++||+|+..
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~v~~~ 141 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIA---ALEEGEFDLAIGL 141 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHH---HCCTTSCSEEEEE
T ss_pred CCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhh---hccCCCccEEEEC
Confidence 468999999999999999998 689999999877666554 3455689999999999843 2247899999865
Q ss_pred CCCCCCCCchhhhhhhHH---HHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQR---SLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~---~~l~~i~rvLkpGG~l~~~ 238 (311)
-. .|| +.++ ..+..+.+.|+++|..++.
T Consensus 142 e~------~eh---v~~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 142 SV------FHH---IVHLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp SC------HHH---HHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred cc------hhc---CCCHHHHHHHHHHHHHhccccceeeE
Confidence 21 122 1111 2234456667777766554
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.5e-08 Score=91.51 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=56.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++..|||||||+|.++..++++ ..+++|||+++.+++.++++ +.+|+.++++|+.++ +.++..+|.|+.+.
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~-----~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKV-----DLNKLDFNKVVANL 122 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTS-----CGGGSCCSEEEEEC
T ss_pred CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhC-----CcccCCccEEEEeC
Confidence 4679999999999999999998 57999999866555444322 357999999999886 22356799999996
Q ss_pred C
Q 021567 203 P 203 (311)
Q Consensus 203 p 203 (311)
|
T Consensus 123 P 123 (295)
T 3gru_A 123 P 123 (295)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.60 E-value=6.4e-10 Score=99.75 Aligned_cols=104 Identities=14% Similarity=0.045 Sum_probs=69.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccC-CCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASY-PGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~-~~s~D~V~i~ 201 (311)
++.+|||||||+|.++..++++. .+++|+|+++.+++.++++ ..+|++++++|+.++ +.+ +++| .|+.+
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~-----~~~~~~~f-~vv~n 100 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF-----QFPNKQRY-KIVGN 100 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT-----TCCCSSEE-EEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhc-----CcccCCCc-EEEEe
Confidence 45789999999999999999984 7999999877655544322 346899999999886 223 3678 66677
Q ss_pred CCCCCCCCchhhhhhh-----HHHHH----HHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMV-----QRSLV----EAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~-----~~~~l----~~i~rvLkpGG~l~~~ 238 (311)
.|-- .....-..+. ...++ +.+.|+|+|||.+.+.
T Consensus 101 ~Py~--~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 101 IPYH--LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp CCSS--SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred CCcc--ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 4422 1110000000 01233 6688999999987764
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.58 E-value=7.8e-08 Score=93.71 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=76.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-------------CCCeEEEEchHHHHHHHH----HHcCCC--cEEEEEccccchhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-------------KDLNFLGLELVTHCRDSL----QLSGIT--NGYFIATNATSTFR 185 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-------------p~~~vvGiDi~~~a~~~a----~~~~~~--Nv~f~~~Da~~ll~ 185 (311)
.+.+|||.|||+|.+++.+++.. +..+++|+|++..+.+.+ ..+++. ++.+.++|+...
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~-- 248 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK-- 248 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS--
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC--
Confidence 35689999999999999998753 356899999876555444 345664 788999998765
Q ss_pred hhhccCCCcEeEEEEeCCCCCCCCchh-----hh------hhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 186 SIVASYPGKLILVSIQCPNPDFNRPEH-----RW------RMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 186 ~~~~~~~~s~D~V~i~fpdP~~k~~h~-----kr------Rl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
+ ....||.|+.|-| +...... +. .-....|++.+.+.|+|||++.+.+.+
T Consensus 249 ---~-~~~~fD~Iv~NPP--f~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 249 ---E-PSTLVDVILANPP--FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp ---C-CSSCEEEEEECCC--SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ---c-ccCCcCEEEECCC--CCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 2 2348999998833 2211100 00 001248999999999999999987643
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.4e-07 Score=81.35 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=56.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++..|||||||+|.++..++++ +..+++|+|++..+++.++++...|++++++|+..+- ++...+.+ .|+.|.|
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~---~~~~~~~~-~vv~NlP 104 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFP---FCSLGKEL-KVVGNLP 104 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCC---GGGSCSSE-EEEEECC
T ss_pred CcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCC---hhHccCCc-EEEEECc
Confidence 4678999999999999999987 4579999999999888886554468999999998861 11111233 6667754
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-07 Score=83.82 Aligned_cols=119 Identities=8% Similarity=-0.057 Sum_probs=84.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
....|||||||+|-+++.++...|...|+|+|+++.+++.++ ..|+. ..+...|...- .+++.+|++.+
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~------~p~~~~DvaL~ 204 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLED------RLDEPADVTLL 204 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTS------CCCSCCSEEEE
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeeccc------CCCCCcchHHH
Confidence 356899999999999999999999999999998776665544 44654 78888886543 24788999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-----------HHHHHHHHHHHHhcCCC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----------EEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-----------~~~~~~~~~~l~~~g~~ 258 (311)
+-.-| +-.+--....+ ++.+.|+|+|.++- .|. +.|.+++.+.+.+.|+.
T Consensus 205 lkti~------~Le~q~kg~g~-~ll~aL~~~~vvVS-fp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~ 265 (281)
T 3lcv_B 205 LKTLP------CLETQQRGSGW-EVIDIVNSPNIVVT-FPTKSLGQRSKGMFQNYSQSFESQARERSCR 265 (281)
T ss_dssp TTCHH------HHHHHSTTHHH-HHHHHSSCSEEEEE-EECC-------CHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHH------HhhhhhhHHHH-HHHHHhCCCCEEEe-ccchhhcCCCcchhhHHHHHHHHHHHhcCCc
Confidence 63222 11111112444 88999999998864 233 45677777777777774
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=6.9e-07 Score=80.13 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=55.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCC-CcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYP-GKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~-~s~D~V~i~ 201 (311)
++..|||||||+|.++..++++. .+++|+|+++.+++.++++ ..+|++++++|+.++ +.++ ..+ .|+.+
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~-----~~~~~~~~-~vv~n 101 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQF-----KFPKNQSY-KIFGN 101 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGC-----CCCSSCCC-EEEEE
T ss_pred CCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhC-----CcccCCCe-EEEEe
Confidence 45789999999999999999985 7899999998888777653 236899999999886 2232 345 46666
Q ss_pred CC
Q 021567 202 CP 203 (311)
Q Consensus 202 fp 203 (311)
.|
T Consensus 102 lP 103 (244)
T 1qam_A 102 IP 103 (244)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-07 Score=85.72 Aligned_cols=76 Identities=7% Similarity=0.076 Sum_probs=59.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CCCcEEEEEccccchhhhhhcc-CCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVAS-YPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~ 199 (311)
++.+|||+|||+|.++..++++.|+.+++|+|.++.+++.++++ + .|+.++++|+.++ +..++. ....||.|+
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l-~~~l~~~g~~~~D~Vl 103 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREA-DFLLKTLGIEKVDGIL 103 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGH-HHHHHHTTCSCEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHH-HHHHHhcCCCCCCEEE
Confidence 46799999999999999999998888999999988877776542 3 6899999999886 222211 125799998
Q ss_pred EeC
Q 021567 200 IQC 202 (311)
Q Consensus 200 i~f 202 (311)
+..
T Consensus 104 ~D~ 106 (301)
T 1m6y_A 104 MDL 106 (301)
T ss_dssp EEC
T ss_pred EcC
Confidence 764
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.6e-08 Score=86.80 Aligned_cols=71 Identities=20% Similarity=0.138 Sum_probs=57.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH-------HHHHHHHH----cCCCc-EEEEEccccchhhhhhccCC-
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT-------HCRDSLQL----SGITN-GYFIATNATSTFRSIVASYP- 192 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~-------~a~~~a~~----~~~~N-v~f~~~Da~~ll~~~~~~~~- 192 (311)
+.+|||+|||+|.+++.+|+. ..+|+|+|+++ .+++.+++ +++.| ++++++|+.++++. + ++
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~-~--~~~ 158 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA-L--VKT 158 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH-H--HHH
T ss_pred cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh-h--hcc
Confidence 578999999999999999997 57899999887 77776653 34445 99999999987542 2 23
Q ss_pred -CcEeEEEEe
Q 021567 193 -GKLILVSIQ 201 (311)
Q Consensus 193 -~s~D~V~i~ 201 (311)
++||.|+++
T Consensus 159 ~~~fD~V~~d 168 (258)
T 2r6z_A 159 QGKPDIVYLD 168 (258)
T ss_dssp HCCCSEEEEC
T ss_pred CCCccEEEEC
Confidence 689999987
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=8e-07 Score=80.13 Aligned_cols=96 Identities=15% Similarity=-0.040 Sum_probs=68.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
....|||||||+|.+++.++ |...|+|+|++..+++.++. .+ .+..+..+|.... + .++++|++.+
T Consensus 105 ~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~-----~-~~~~~DvvLl 174 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCA-----P-PAEAGDLALI 174 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTS-----C-CCCBCSEEEE
T ss_pred CCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccC-----C-CCCCcchHHH
Confidence 45799999999999999888 78999999998766665543 34 6789999998765 2 3668999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+-.- |+-.+.-....+ .+.+.|+++|.++-
T Consensus 175 lk~l------h~LE~q~~~~~~-~ll~aL~~~~vvVs 204 (253)
T 3frh_A 175 FKLL------PLLEREQAGSAM-ALLQSLNTPRMAVS 204 (253)
T ss_dssp ESCH------HHHHHHSTTHHH-HHHHHCBCSEEEEE
T ss_pred HHHH------HHhhhhchhhHH-HHHHHhcCCCEEEE
Confidence 7221 211111112333 77779999987763
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-07 Score=84.53 Aligned_cols=74 Identities=20% Similarity=0.088 Sum_probs=56.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchh-hhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTF-RSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll-~~~~~~~~~s~D~V~i~ 201 (311)
++..|||||||+|.++..++++. .+++|+|+++.+++.++++ ..+|++++++|+.++. +..+ .+..+| |+.|
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~--~~~~~~-vv~N 103 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVK--TDKPLR-VVGN 103 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSC--CSSCEE-EEEE
T ss_pred CcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhc--cCCCeE-EEec
Confidence 46789999999999999999884 7999999988777776543 2468999999999871 1111 135688 7777
Q ss_pred CC
Q 021567 202 CP 203 (311)
Q Consensus 202 fp 203 (311)
.|
T Consensus 104 lP 105 (255)
T 3tqs_A 104 LP 105 (255)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=9.3e-07 Score=81.83 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=93.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH------c---CCCcEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL------S---GITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~------~---~~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
+..+||=||-|.|..+..+++..|..+++.||+.+...+.+++ . .-++++++.+|+...+.. .+..+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~----~~~~y 158 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ----TSQTF 158 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC----SSCCE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh----ccccC
Confidence 4578999999999999999998777899999986555444432 1 235799999999988642 46789
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHhc
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEY 255 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~~ 255 (311)
|+|++..+||.-.. ..+.+.+|++.++++|+|||.+..++.+. .....+.+.+.+.
T Consensus 159 DvIi~D~~dp~~~~----~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~ 218 (294)
T 3o4f_A 159 DVIISDCTDPIGPG----ESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY 218 (294)
T ss_dssp EEEEESCCCCCCTT----CCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCc----hhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhh
Confidence 99999999886322 24667899999999999999999875332 2334455555554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=8.4e-07 Score=91.37 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=75.4
Q ss_pred CCCeEEEEeccccHHHHHHHhh------------------------------------------CCCCeEEEEchHHH--
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK------------------------------------------RKDLNFLGLELVTH-- 160 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~------------------------------------------~p~~~vvGiDi~~~-- 160 (311)
.+..+||.+||+|.+++..|.. .++..++|+|++..
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 3568999999999999998864 23468999998655
Q ss_pred --HHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHH---HHHHhcccCCeE
Q 021567 161 --CRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV---EAVSDLLVHDGK 234 (311)
Q Consensus 161 --a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l---~~i~rvLkpGG~ 234 (311)
|.++++..|+.+ +.|.++|+.++.. +..++++|.|+.| .|+- .+......+ ..+. .++.+.+.|||.
T Consensus 270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~---~~~~~~~d~Iv~N--PPYG-~Rlg~~~~l-~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 270 QRARTNARLAGIGELITFEVKDVAQLTN---PLPKGPYGTVLSN--PPYG-ERLDSEPAL-IALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp HHHHHHHHHTTCGGGEEEEECCGGGCCC---SCTTCCCCEEEEC--CCCC-C---CCHHH-HHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHcCCCCceEEEECChhhCcc---ccccCCCCEEEeC--CCcc-ccccchhHH-HHHHHHHHHHHHhhCCCCe
Confidence 445555678765 9999999988621 2123489999988 3432 111110011 2333 344455568999
Q ss_pred EEEEeCcHHHH
Q 021567 235 VFLQSDIEEVM 245 (311)
Q Consensus 235 l~~~tD~~~~~ 245 (311)
+++.|.+..+.
T Consensus 343 ~~ilt~~~~l~ 353 (703)
T 3v97_A 343 LSLFSASPDLL 353 (703)
T ss_dssp EEEEESCHHHH
T ss_pred EEEEeCCHHHH
Confidence 99999877654
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-07 Score=85.43 Aligned_cols=59 Identities=17% Similarity=0.039 Sum_probs=48.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC--CeEEEEchHHHHHHHHHHcCCCcEEEEEccccch
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELVTHCRDSLQLSGITNGYFIATNATST 183 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~--~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~l 183 (311)
++..|||||||+|.++..|+++.+. .+++|+|+++.+++.++++...|++++++|+.++
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTF 102 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGC
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcC
Confidence 4678999999999999999998542 4599999988877777544235899999999986
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-07 Score=88.95 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=56.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHc--CCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLS--GITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+.+|||+|||+|..++.+|+. ..+|+|+|+++.+++.+ +.. +++|++++++|+.+.++. + .+..||.|+
T Consensus 94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~--~~~~fDvV~ 168 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-I--KTFHPDYIY 168 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-H--HHHCCSEEE
T ss_pred CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-c--cCCCceEEE
Confidence 679999999999999999987 46999999876555544 444 778999999999986442 1 245799998
Q ss_pred Ee
Q 021567 200 IQ 201 (311)
Q Consensus 200 i~ 201 (311)
++
T Consensus 169 lD 170 (410)
T 3ll7_A 169 VD 170 (410)
T ss_dssp EC
T ss_pred EC
Confidence 76
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-07 Score=83.99 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=55.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-CCCcEEEEEccccchhhhhhccCC-CcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYP-GKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~~~Nv~f~~~Da~~ll~~~~~~~~-~s~D~V~i~f 202 (311)
++ .|||||||+|.++..++++. .+++|+|+++.+++.++++ ...|++++++|+..+. + ++ ..+|.|+.|.
T Consensus 47 ~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~---~--~~~~~~~~iv~Nl 118 (271)
T 3fut_A 47 TG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYP---W--EEVPQGSLLVANL 118 (271)
T ss_dssp CS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSC---G--GGSCTTEEEEEEE
T ss_pred CC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCC---h--hhccCccEEEecC
Confidence 45 89999999999999999984 6899999887777666543 2258999999998861 1 22 2578888886
Q ss_pred CC
Q 021567 203 PN 204 (311)
Q Consensus 203 pd 204 (311)
|-
T Consensus 119 Py 120 (271)
T 3fut_A 119 PY 120 (271)
T ss_dssp CS
T ss_pred cc
Confidence 53
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.4e-06 Score=76.88 Aligned_cols=118 Identities=11% Similarity=0.055 Sum_probs=83.1
Q ss_pred CCeEEEEeccccHHHHHHHhhC-----CCCeEEEEchH------------------------------HHHHHHHHHcCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLELV------------------------------THCRDSLQLSGI 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~-----p~~~vvGiDi~------------------------------~~a~~~a~~~~~ 170 (311)
...||||||.+|..++.+|... ++.+++++|.. +.+.++.++.|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 4689999999999999998753 57899999931 235566666776
Q ss_pred --CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc---HHHH
Q 021567 171 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVM 245 (311)
Q Consensus 171 --~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~---~~~~ 245 (311)
++++++.||+.+.++. + +++++|.|++.. | ... -....|+.+...|+|||.+++ .|. ..-.
T Consensus 187 ~~~~I~li~Gda~etL~~-~--~~~~~d~vfIDa-D----~y~-----~~~~~Le~~~p~L~pGGiIv~-DD~~~~~G~~ 252 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPT-A--PIDTLAVLRMDG-D----LYE-----STWDTLTNLYPKVSVGGYVIV-DDYMMCPPCK 252 (282)
T ss_dssp CSTTEEEEESCHHHHSTT-C--CCCCEEEEEECC-C----SHH-----HHHHHHHHHGGGEEEEEEEEE-SSCTTCHHHH
T ss_pred CcCceEEEEeCHHHHHhh-C--CCCCEEEEEEcC-C----ccc-----cHHHHHHHHHhhcCCCEEEEE-cCCCCCHHHH
Confidence 6899999999887653 2 357899998873 2 101 124789999999999999886 332 2223
Q ss_pred HHHHHHHHhcCC
Q 021567 246 LRMKQQFLEYGK 257 (311)
Q Consensus 246 ~~~~~~l~~~g~ 257 (311)
+.+.+...+.+.
T Consensus 253 ~Av~Ef~~~~~i 264 (282)
T 2wk1_A 253 DAVDEYRAKFDI 264 (282)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 333444455554
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.32 E-value=5e-06 Score=72.89 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=69.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcC---CCcEEEEEccccch--------------h
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSG---ITNGYFIATNATST--------------F 184 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~---~~Nv~f~~~Da~~l--------------l 184 (311)
..+|||||| |..++.+|+. ++.+++.||.. +.|.+..++.+ .+|+.++.+|+.+. +
T Consensus 31 a~~VLEiGt--GySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 31 AEVILEYGS--GGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp CSEEEEESC--SHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCEEEEECc--hHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 578999998 5788888884 57899999964 45666666667 46899999997653 1
Q ss_pred hh----hhcc-CCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 185 RS----IVAS-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 185 ~~----~~~~-~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
+. .... ..+.||.|++.- .+| ...+..+.+.|+|||++++ |+
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg----------~k~---~~~~~~~l~~l~~GG~Iv~--DN 154 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDG----------RFR---VGCALATAFSITRPVTLLF--DD 154 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECS----------SSH---HHHHHHHHHHCSSCEEEEE--TT
T ss_pred HHHhhhhhccccCCCCCEEEEeC----------CCc---hhHHHHHHHhcCCCeEEEE--eC
Confidence 11 1111 237899998872 112 2566677799999999964 55
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-06 Score=89.63 Aligned_cols=125 Identities=12% Similarity=0.130 Sum_probs=81.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC---CCeEEEEchHHHHHHHH--HH--------cCCCcEEEEEccccchhhhhhccC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK---DLNFLGLELVTHCRDSL--QL--------SGITNGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p---~~~vvGiDi~~~a~~~a--~~--------~~~~Nv~f~~~Da~~ll~~~~~~~ 191 (311)
.+.+|||.|||+|.+++.++++.+ ..+++|+|+...+.+.+ +. .+..+..+...|.... . +..
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~-~---~~~ 396 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL-N---PED 396 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC-C---GGG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc-c---ccc
Confidence 367999999999999999998865 35899999876555544 21 2333345555565542 1 113
Q ss_pred CCcEeEEEEeCCCCCCCCc---hh----hhhh----------------hHHHHHHHHHhcccCCeEEEEEeCcHHH----
Q 021567 192 PGKLILVSIQCPNPDFNRP---EH----RWRM----------------VQRSLVEAVSDLLVHDGKVFLQSDIEEV---- 244 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~---h~----krRl----------------~~~~~l~~i~rvLkpGG~l~~~tD~~~~---- 244 (311)
...||.|+.| +|+.... .. .+|+ ....|++.+.+.|+|||++.+.+....+
T Consensus 397 ~~kFDVVIgN--PPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg 474 (878)
T 3s1s_A 397 FANVSVVVMN--PPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQG 474 (878)
T ss_dssp GTTEEEEEEC--CBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCS
T ss_pred cCCCCEEEEC--CCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCC
Confidence 5689999998 4442211 00 0111 2356899999999999999998765444
Q ss_pred --HHHHHHHHHhc
Q 021567 245 --MLRMKQQFLEY 255 (311)
Q Consensus 245 --~~~~~~~l~~~ 255 (311)
...+.+.+.+.
T Consensus 475 ~~~kkLRk~LLe~ 487 (878)
T 3s1s_A 475 NESKAFREFLVGN 487 (878)
T ss_dssp HHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhC
Confidence 34556655544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=9.4e-07 Score=88.38 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=82.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC------------------CCeEEEEchHHHHHHHHH----HcCCCc-----EEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK------------------DLNFLGLELVTHCRDSLQ----LSGITN-----GYFIA 177 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p------------------~~~vvGiDi~~~a~~~a~----~~~~~N-----v~f~~ 177 (311)
.+.+|||.|||+|.+++.+++... ..+++|+|++..+.+.++ .+++.+ +.+.+
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 356899999999999999886521 247999998766555543 356665 78899
Q ss_pred ccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh--h------hhhhHHHHHHHHHhcccCCeEEEEEeCcHHH-----
Q 021567 178 TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH--R------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV----- 244 (311)
Q Consensus 178 ~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~--k------rRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~----- 244 (311)
+|+..... . ....||.|+.|- |+-..... + ..-..-.|+..+.+.|+|||++.+.+.+..+
T Consensus 249 gDtL~~~~--~--~~~~fD~Vv~NP--Pf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~ 322 (541)
T 2ar0_A 249 GNTLGSDG--E--NLPKAHIVATNP--PFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK 322 (541)
T ss_dssp SCTTSHHH--H--TSCCEEEEEECC--CCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTH
T ss_pred CCCccccc--c--cccCCeEEEECC--CcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcH
Confidence 99876421 1 356899999883 33211100 0 0011247999999999999999987654322
Q ss_pred HHHHHHHHHhc
Q 021567 245 MLRMKQQFLEY 255 (311)
Q Consensus 245 ~~~~~~~l~~~ 255 (311)
...+.+.+.+.
T Consensus 323 ~~~iR~~L~~~ 333 (541)
T 2ar0_A 323 GTDIRRDLMDK 333 (541)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 33455555554
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=87.80 Aligned_cols=99 Identities=12% Similarity=0.155 Sum_probs=68.1
Q ss_pred CCeEEEEeccccHH---HHHHHhh-CCCCeEEEEchH---HHHHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeE
Q 021567 126 QPLVVDIGSGNGLF---LLGMARK-RKDLNFLGLELV---THCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~---~~~lA~~-~p~~~vvGiDi~---~~a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~ 197 (311)
..+|||+|||+|-+ ++..+++ ....+|++||.+ ..+++..++++.. .|+++++|++++ . .+..+|.
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev-~-----LPEKVDI 431 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREW-V-----APEKADI 431 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTC-C-----CSSCEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceec-c-----CCcccCE
Confidence 45899999999988 4444444 223478999954 4566666777764 599999999987 1 2578999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
|+.-...... -...+ ++.+....|.|||||.++
T Consensus 432 IVSEwMG~fL----l~E~m--levL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 432 IVSELLGSFA----DNELS--PECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EECCCCBTTB----GGGCH--HHHHHHHGGGEEEEEEEE
T ss_pred EEEEcCcccc----cccCC--HHHHHHHHHhcCCCcEEc
Confidence 9754222210 00112 467888899999999864
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-05 Score=75.29 Aligned_cols=124 Identities=13% Similarity=0.045 Sum_probs=86.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH----HHHHHHcCC------CcEEEEEccccchhhhhhccCCCc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGI------TNGYFIATNATSTFRSIVASYPGK 194 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a----~~~a~~~~~------~Nv~f~~~Da~~ll~~~~~~~~~s 194 (311)
++.+|||+|+|.|.=+..+|...++..++++|++..- .+++++.+. .|+.+...|+..+ ... ..+.
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~-~~~---~~~~ 223 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW-GEL---EGDT 223 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH-HHH---STTC
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc-chh---cccc
Confidence 4779999999999999999998777789999986533 334444333 4799999999876 221 3678
Q ss_pred EeEEEEeCCC-----------CCCCCchhhh---hh--hHHHHHHHHHhcccCCeEEEEEe------CcHHHHHHHHHHH
Q 021567 195 LILVSIQCPN-----------PDFNRPEHRW---RM--VQRSLVEAVSDLLVHDGKVFLQS------DIEEVMLRMKQQF 252 (311)
Q Consensus 195 ~D~V~i~fpd-----------P~~k~~h~kr---Rl--~~~~~l~~i~rvLkpGG~l~~~t------D~~~~~~~~~~~l 252 (311)
||.|.+.-|- |..+.+.... ++ ++.++|+...+.|||||+++-+| .++...+++++..
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~ 303 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELL 303 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHH
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhC
Confidence 9999887542 2111111111 11 34689999999999999999876 4555555555544
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.4e-06 Score=82.36 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=86.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhC---CCCeEEEEchHHHHHHHH----HHcCC--CcEEEEEccccchhhhhhc-cCCCc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR---KDLNFLGLELVTHCRDSL----QLSGI--TNGYFIATNATSTFRSIVA-SYPGK 194 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~---p~~~vvGiDi~~~a~~~a----~~~~~--~Nv~f~~~Da~~ll~~~~~-~~~~s 194 (311)
.+.+|||.+||||.+++.+++.. +..+++|+|+...+.+.+ ..+|+ +++.+.++|..... .| ..+..
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d---~p~~~~~~ 297 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDED---WPTQEPTN 297 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSC---SCCSSCCC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccc---cccccccc
Confidence 45799999999999999998873 367999999866554444 34576 57899999986541 01 13578
Q ss_pred EeEEEEeCCCCCCCCch------hhhhh-----------hHHHHHHHHHhccc-CCeEEEEEeCcHHH-----HHHHHHH
Q 021567 195 LILVSIQCPNPDFNRPE------HRWRM-----------VQRSLVEAVSDLLV-HDGKVFLQSDIEEV-----MLRMKQQ 251 (311)
Q Consensus 195 ~D~V~i~fpdP~~k~~h------~krRl-----------~~~~~l~~i~rvLk-pGG~l~~~tD~~~~-----~~~~~~~ 251 (311)
||.|+.| +|+-.... ...|. .+-.|+..+.+.|+ |||++.+.+.+..+ ...+++.
T Consensus 298 fD~IvaN--PPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~ 375 (542)
T 3lkd_A 298 FDGVLMN--PPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKA 375 (542)
T ss_dssp BSEEEEC--CCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHH
T ss_pred ccEEEec--CCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHH
Confidence 9999998 33322110 00111 11359999999999 99999887755443 2456666
Q ss_pred HHhcCC
Q 021567 252 FLEYGK 257 (311)
Q Consensus 252 l~~~g~ 257 (311)
+.+.+.
T Consensus 376 Lle~~~ 381 (542)
T 3lkd_A 376 LLEEGA 381 (542)
T ss_dssp HHHTTC
T ss_pred HHhCCc
Confidence 666544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-06 Score=77.29 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=68.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH---cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL---SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~---~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+.+|||||||+|.++...+++.+...+.|+|+.......... .+ .|+..++.++... ...+..+|+|...
T Consensus 74 ~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g-~~ii~~~~~~dv~-----~l~~~~~DlVlsD 147 (277)
T 3evf_A 74 LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLG-WNIITFKDKTDIH-----RLEPVKCDTLLCD 147 (277)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTT-GGGEEEECSCCTT-----TSCCCCCSEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCC-CCeEEEeccceeh-----hcCCCCccEEEec
Confidence 3568999999999999999987666678888864221000000 01 1666677766432 2246789999887
Q ss_pred CCCCCCCCchhhhhh-hHHHHHHHHHhcccCC-eEEEEEeCc
Q 021567 202 CPNPDFNRPEHRWRM-VQRSLVEAVSDLLVHD-GKVFLQSDI 241 (311)
Q Consensus 202 fpdP~~k~~h~krRl-~~~~~l~~i~rvLkpG-G~l~~~tD~ 241 (311)
.... ..++-... -.-.+|+.+.++|+|| |.|+++.=.
T Consensus 148 ~apn---sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 148 IGES---SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCC---CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CccC---cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 5321 12211111 1124588899999999 999997633
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-06 Score=78.21 Aligned_cols=76 Identities=17% Similarity=0.111 Sum_probs=53.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC--CCcEEEEEccccch-hhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATST-FRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~--~~Nv~f~~~Da~~l-l~~~~~~~~~s~D~V~i~ 201 (311)
.+..|||||||+|.++. +++ .+..+++|+|+++.+++.++++- .+|++++++|+..+ +...++. ++..+.|+.|
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~-~~~~~~vvsN 97 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEK-MGQPLRVFGN 97 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHH-HTSCEEEEEE
T ss_pred CcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcc-cCCceEEEEC
Confidence 45789999999999999 754 43334999999998888876542 25899999999886 1221100 1234678888
Q ss_pred CC
Q 021567 202 CP 203 (311)
Q Consensus 202 fp 203 (311)
.|
T Consensus 98 lP 99 (252)
T 1qyr_A 98 LP 99 (252)
T ss_dssp CC
T ss_pred CC
Confidence 55
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=7.6e-06 Score=78.43 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=101.3
Q ss_pred CCeEEEEeccccHHHHHHHhh-----------------CCCCeEEEEchH-----------HHHHHHHHH-cCC-CcEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARK-----------------RKDLNFLGLELV-----------THCRDSLQL-SGI-TNGYF 175 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~-----------------~p~~~vvGiDi~-----------~~a~~~a~~-~~~-~Nv~f 175 (311)
.-+|+|+||++|..++.+... .|+.+|+.-|+- +...+.+.+ .+. .+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 467999999999999887654 477899999952 222232222 221 24588
Q ss_pred EEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhh-----------hh----------h-------h---HHHHHHH
Q 021567 176 IATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR-----------WR----------M-------V---QRSLVEA 224 (311)
Q Consensus 176 ~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~k-----------rR----------l-------~---~~~~l~~ 224 (311)
+.+....+...+| +++++|.|+.++.-.|..+.-.. .+ + . -..||+.
T Consensus 133 ~~gvpgSFy~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~ 210 (384)
T 2efj_A 133 IGAMPGSFYSRLF--PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI 210 (384)
T ss_dssp EEECCSCTTSCCS--CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccC--CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888776666 69999999999887776543100 00 0 0 0356888
Q ss_pred HHhcccCCeEEEEEe---CcH--H-----HHHHHHHHHHhcCCCceeeeccccccccCCCCCCCCCCCCCCCHH--HHHH
Q 021567 225 VSDLLVHDGKVFLQS---DIE--E-----VMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDW--EQHV 292 (311)
Q Consensus 225 i~rvLkpGG~l~~~t---D~~--~-----~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~~~~~~T~y--E~~~ 292 (311)
.++.|+|||++++.+ ++. . ....+...+...|.-. .+.+ +. -..|.+.+|.- +...
T Consensus 211 Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~----~ek~------ds--f~~P~y~ps~~E~~~~l 278 (384)
T 2efj_A 211 HSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLE----EEKL------DS--FNVPIYAPSTEEVKRIV 278 (384)
T ss_dssp HHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSC----HHHH------HT--CCCSBCCCCHHHHHHHH
T ss_pred HHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcc----hhhh------cc--cCCcccCCCHHHHHHHH
Confidence 899999999999975 222 2 4445555555555321 1111 00 12355555554 4445
Q ss_pred HHcC-CCeEEEEEE
Q 021567 293 IDRG-APMYRLMLS 305 (311)
Q Consensus 293 ~~~G-~~i~~~~~~ 305 (311)
.+.| ..|.++...
T Consensus 279 e~~g~F~i~~le~~ 292 (384)
T 2efj_A 279 EEEGSFEILYLETF 292 (384)
T ss_dssp HHHCSEEEEEEEEE
T ss_pred HHcCCceEEEEEEE
Confidence 5554 577666543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-05 Score=76.41 Aligned_cols=116 Identities=15% Similarity=0.104 Sum_probs=85.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------C------CCcEEEEEccccchhhhhhccCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G------ITNGYFIATNATSTFRSIVASYP 192 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~------~~Nv~f~~~Da~~ll~~~~~~~~ 192 (311)
+.++||=||-|.|..+..+.+. |..+++.||+.+...+.+++. + .++++++.+|+...+...- ...
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~-~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA-KEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH-HHT
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh-hcc
Confidence 3578999999999999999875 557999999877666666542 1 1358999999998875421 135
Q ss_pred CcEeEEEEeCCCCCCCC--chhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 193 GKLILVSIQCPNPDFNR--PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 193 ~s~D~V~i~fpdP~~k~--~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
..+|+|++..+||.... ......+..++|++.++++|+|||.++.+..+.
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~ 334 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV 334 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 68999999977654321 112234667899999999999999999876543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-06 Score=79.50 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=52.9
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH-------HHHHHHHc----C-C-CcEEEEEccccchhhhhhccCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH-------CRDSLQLS----G-I-TNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~-------a~~~a~~~----~-~-~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
.+|||+|||+|..++.+|++ +.+|+|+|.++. ++++++.+ + + .|++++++|+.++++. + +.
T Consensus 90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~-~---~~ 163 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-I---TP 163 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT-C---SS
T ss_pred CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh-C---cc
Confidence 78999999999999999998 568999997653 44444321 2 3 5799999999987542 2 34
Q ss_pred cEeEEEEe
Q 021567 194 KLILVSIQ 201 (311)
Q Consensus 194 s~D~V~i~ 201 (311)
.||.|++.
T Consensus 164 ~fDvV~lD 171 (258)
T 2oyr_A 164 RPQVVYLD 171 (258)
T ss_dssp CCSEEEEC
T ss_pred cCCEEEEc
Confidence 69999886
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.08 E-value=4.3e-06 Score=85.41 Aligned_cols=105 Identities=9% Similarity=-0.023 Sum_probs=67.4
Q ss_pred CCeEEEEeccccHHHHH---HHh-hC---------CCCeEEEEchHHHH---HHHHHHcCCCc-EEEEEccccchhhhhh
Q 021567 126 QPLVVDIGSGNGLFLLG---MAR-KR---------KDLNFLGLELVTHC---RDSLQLSGITN-GYFIATNATSTFRSIV 188 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~---lA~-~~---------p~~~vvGiDi~~~a---~~~a~~~~~~N-v~f~~~Da~~ll~~~~ 188 (311)
..+|||||||+|-+... .++ .. ...+|++||.+..| +++...++..+ |+++++|++++-...-
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 45899999999999632 222 11 24599999976543 33333467655 9999999999721000
Q ss_pred ccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 189 ~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
...+..+|.|+.-...... -. ...++.|..+.+.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmGsfl-----~n-EL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFG-----DN-ELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTB-----GG-GSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEecccccc-----ch-hccHHHHHHHHHhCCCCcEEE
Confidence 0125689999765332210 00 123578888899999999765
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.3e-06 Score=82.46 Aligned_cols=125 Identities=14% Similarity=0.016 Sum_probs=80.1
Q ss_pred CeEEEEeccccHHHHHHHhhCC---------------CCeEEEEchHHHHHHHHH----HcCCC-cEEEEEccccchhhh
Q 021567 127 PLVVDIGSGNGLFLLGMARKRK---------------DLNFLGLELVTHCRDSLQ----LSGIT-NGYFIATNATSTFRS 186 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p---------------~~~vvGiDi~~~a~~~a~----~~~~~-Nv~f~~~Da~~ll~~ 186 (311)
.+|||.+||||.+++.+++..+ ..+++|+|+...+.+.++ .+++. ++.+.++|.... +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~-~- 323 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD-D- 323 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS-C-
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC-c-
Confidence 4899999999999998865421 468999998665554443 35553 444477876543 1
Q ss_pred hhccCCCcEeEEEEeCCCCCCCCchh------hhh-----------------hhHHHHHHHHHhcccCCeEEEEEeCcHH
Q 021567 187 IVASYPGKLILVSIQCPNPDFNRPEH------RWR-----------------MVQRSLVEAVSDLLVHDGKVFLQSDIEE 243 (311)
Q Consensus 187 ~~~~~~~s~D~V~i~fpdP~~k~~h~------krR-----------------l~~~~~l~~i~rvLkpGG~l~~~tD~~~ 243 (311)
...+..||.|+.| +|+-..... ..| -..-.|+..+.+.|+|||++.+.+.+..
T Consensus 324 --~~~~~~fD~Iv~N--PPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~ 399 (544)
T 3khk_A 324 --QHPDLRADFVMTN--PPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGS 399 (544)
T ss_dssp --SCTTCCEEEEEEC--CCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHH
T ss_pred --ccccccccEEEEC--CCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchh
Confidence 1135789999998 343321000 001 0113699999999999999988764432
Q ss_pred ------HHHHHHHHHHhcCC
Q 021567 244 ------VMLRMKQQFLEYGK 257 (311)
Q Consensus 244 ------~~~~~~~~l~~~g~ 257 (311)
....+.+.+.+.+.
T Consensus 400 L~~~~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 400 MSSNTNNEGEIRKTLVEQDL 419 (544)
T ss_dssp HHCCGGGHHHHHHHHHHTTC
T ss_pred hhcCcchHHHHHHHHHhCCc
Confidence 23456666666544
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.8e-05 Score=75.67 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=72.4
Q ss_pred CCeEEEEeccccHHHHHHH--------hhC-------CCCeEEEEchHH---HHH-HHHHH-----------c-CCCcEE
Q 021567 126 QPLVVDIGSGNGLFLLGMA--------RKR-------KDLNFLGLELVT---HCR-DSLQL-----------S-GITNGY 174 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA--------~~~-------p~~~vvGiDi~~---~a~-~~a~~-----------~-~~~Nv~ 174 (311)
.-+|+|+|||+|..++.+. +++ |+.+|..-|+-. ..+ +.+.. . ...+-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4689999999999998872 222 778888988521 111 11100 0 001234
Q ss_pred EEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhh-----------hh------------h-------hHHHHHHH
Q 021567 175 FIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR-----------WR------------M-------VQRSLVEA 224 (311)
Q Consensus 175 f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~k-----------rR------------l-------~~~~~l~~ 224 (311)
|+.+....+....| +++++|.|+.++.-.|..+.-.. .+ . --..||+.
T Consensus 133 f~~gvpgSFy~rlf--P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 133 FVAGVPGSFYRRLF--PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp EEEEEESCTTSCCS--CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccC--CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555 68999999999988887632110 00 0 01467889
Q ss_pred HHhcccCCeEEEEEe
Q 021567 225 VSDLLVHDGKVFLQS 239 (311)
Q Consensus 225 i~rvLkpGG~l~~~t 239 (311)
.++.|+|||++++.+
T Consensus 211 ra~eL~pGG~mvl~~ 225 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVC 225 (374)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHHhCCCCEEEEEE
Confidence 999999999999874
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.9e-05 Score=64.62 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=58.8
Q ss_pred CCeEEEEecccc-HHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGNG-LFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG-~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..++||||||+| ..+..||++. +..|+++|++..|.. |++.|+.+...+.. ..+|+|+..=|.
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~-----------~v~dDiF~P~~~~Y----~~~DLIYsirPP 99 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG-----------IVRDDITSPRMEIY----RGAALIYSIRPP 99 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT-----------EECCCSSSCCHHHH----TTEEEEEEESCC
T ss_pred CCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc-----------eEEccCCCCccccc----CCcCEEEEcCCC
Confidence 469999999999 6999999842 688999999876544 88888866421111 379999877565
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
|. +++.+++ +++.. |.-+++.+
T Consensus 100 ~E----------l~~~i~~-lA~~v--~adliI~p 121 (153)
T 2k4m_A 100 AE----------IHSSLMR-VADAV--GARLIIKP 121 (153)
T ss_dssp TT----------THHHHHH-HHHHH--TCEEEEEC
T ss_pred HH----------HHHHHHH-HHHHc--CCCEEEEc
Confidence 53 3334443 33332 77777764
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.6e-05 Score=72.82 Aligned_cols=122 Identities=9% Similarity=0.003 Sum_probs=71.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+..|||||||+|.++...+++.+...++|+|+.......+.. .--.|+..+..++... ...+..+|+|....
T Consensus 90 ~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~-----~l~~~~~DvVLSDm 164 (282)
T 3gcz_A 90 PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF-----NMEVIPGDTLLCDI 164 (282)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG-----GSCCCCCSEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchh-----hcCCCCcCEEEecC
Confidence 3568999999999999999988777789999975321111100 0012444444443321 12467899998764
Q ss_pred CCCCCCCchhhh-hhhHHHHHHHHHhcccCC--eEEEEEeCc--HHHHHHHHHHHHh
Q 021567 203 PNPDFNRPEHRW-RMVQRSLVEAVSDLLVHD--GKVFLQSDI--EEVMLRMKQQFLE 254 (311)
Q Consensus 203 pdP~~k~~h~kr-Rl~~~~~l~~i~rvLkpG--G~l~~~tD~--~~~~~~~~~~l~~ 254 (311)
. | ...++-. ..-.-.+|+-+.++|+|| |.|+++.=. -.-....++.++.
T Consensus 165 A-p--nsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~ 218 (282)
T 3gcz_A 165 G-E--SSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQL 218 (282)
T ss_dssp C-C--CCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred c-c--CCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHH
Confidence 2 1 1111111 011124588889999999 999998643 2223334444444
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.80 E-value=1.4e-05 Score=75.90 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=74.9
Q ss_pred CCeEEEEeccccHHHHHHHhh----------------CCCCeEEEEchHHH----HHHHHHHc-CCCcEEEEEccccchh
Q 021567 126 QPLVVDIGSGNGLFLLGMARK----------------RKDLNFLGLELVTH----CRDSLQLS-GITNGYFIATNATSTF 184 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~----------------~p~~~vvGiDi~~~----a~~~a~~~-~~~Nv~f~~~Da~~ll 184 (311)
.-+|+|+||++|..++.+... .|+.+|+.-|+-.. .-+.+... .-.+-.|+.+....+.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 457999999999888765443 56789999996321 11111100 0014578888887776
Q ss_pred hhhhccCCCcEeEEEEeCCCCCCCCchh-----hh-----------------hhhH---HHHHHHHHhcccCCeEEEEEe
Q 021567 185 RSIVASYPGKLILVSIQCPNPDFNRPEH-----RW-----------------RMVQ---RSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 185 ~~~~~~~~~s~D~V~i~fpdP~~k~~h~-----kr-----------------Rl~~---~~~l~~i~rvLkpGG~l~~~t 239 (311)
..+| +++++|.++.++.-.|..+.-. |. +-.. ..||+..++.|+|||++++.+
T Consensus 132 ~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 132 GRLF--PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SCCS--CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hccC--CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 6656 6899999999988777654210 00 0001 478999999999999999874
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00024 Score=65.21 Aligned_cols=74 Identities=11% Similarity=0.019 Sum_probs=58.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc-cCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~-~~~~s~D~V~i~ 201 (311)
++..+||.+||.|.++..++++ +.+++|+|.++.|++.+++...+++.++++|..++ ...+. .....||.|++.
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l-~~~L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHL-KRHLAALGVERVDGILAD 96 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGH-HHHHHHTTCSCEEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchH-HHHHHHcCCCCcCEEEeC
Confidence 4679999999999999999998 68999999999888887652115899999999987 32222 123579999864
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00013 Score=67.15 Aligned_cols=107 Identities=11% Similarity=0.008 Sum_probs=64.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH---HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ---LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~---~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++..||||||++|.++..++++.+-..++|+|+......... ..+ .++.....++... ......+|+|...
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~-~~iv~~~~~~di~-----~l~~~~~DlVlsD 154 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLG-WNIVKFKDKSNVF-----TMPTEPSDTLLCD 154 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTT-GGGEEEECSCCTT-----TSCCCCCSEEEEC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccC-CceEEeecCceee-----ecCCCCcCEEeec
Confidence 478999999999999999998766668899997432100000 001 1333333332211 1235789999876
Q ss_pred CCCCCCCCchhh-hhhhHHHHHHHHHhcccCC-eEEEEEeC
Q 021567 202 CPNPDFNRPEHR-WRMVQRSLVEAVSDLLVHD-GKVFLQSD 240 (311)
Q Consensus 202 fpdP~~k~~h~k-rRl~~~~~l~~i~rvLkpG-G~l~~~tD 240 (311)
.. | ...++. -...+..+|+-+.++|+|| |.|+++.=
T Consensus 155 ~A-P--nsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 155 IG-E--SSSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp CC-C--CCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred Cc-C--CCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 32 2 112211 1111135688889999999 99999863
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00056 Score=63.47 Aligned_cols=123 Identities=13% Similarity=0.052 Sum_probs=77.8
Q ss_pred CCeEEEEeccccHHHHHHH----hhCCCC--eEEEEch------------HHHHHHHHHHc----CCC--cEEEEEcccc
Q 021567 126 QPLVVDIGSGNGLFLLGMA----RKRKDL--NFLGLEL------------VTHCRDSLQLS----GIT--NGYFIATNAT 181 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA----~~~p~~--~vvGiDi------------~~~a~~~a~~~----~~~--Nv~f~~~Da~ 181 (311)
.-+|||+|.|||...+... +..|+. +++.+|. .....+..... ... .+.+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 3579999999998754322 336654 5677772 11222222111 112 3678899999
Q ss_pred chhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 182 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 182 ~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
+.++.+ .+..+|.+++. +.-..+.+ .+=++++++.++++++|||.|.-.| -...+.+.|.+.|+...
T Consensus 177 ~~l~~l---~~~~~Da~flD---gFsP~kNP--eLWs~e~f~~l~~~~~pgg~laTYt----aag~VRR~L~~aGF~V~ 243 (308)
T 3vyw_A 177 KRIKEV---ENFKADAVFHD---AFSPYKNP--ELWTLDFLSLIKERIDEKGYWVSYS----SSLSVRKSLLTLGFKVG 243 (308)
T ss_dssp HHGGGC---CSCCEEEEEEC---CSCTTTSG--GGGSHHHHHHHHTTEEEEEEEEESC----CCHHHHHHHHHTTCEEE
T ss_pred HHHhhh---cccceeEEEeC---CCCcccCc--ccCCHHHHHHHHHHhCCCcEEEEEe----CcHHHHHHHHHCCCEEE
Confidence 886542 34579999875 22111111 2344799999999999999987433 24567788999998654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00047 Score=65.57 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=53.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.++||+||++|.++..++++ +..|+|||..+..- .+ ...++|.++++|+... ......+|.|+..+..
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~-~l--~~~~~V~~~~~d~~~~-----~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQ-SL--MDTGQVTWLREDGFKF-----RPTRSNISWMVCDMVE 280 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCH-HH--HTTTCEEEECSCTTTC-----CCCSSCEEEEEECCSS
T ss_pred CCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcCh-hh--ccCCCeEEEeCccccc-----cCCCCCcCEEEEcCCC
Confidence 4789999999999999999988 67999999642111 11 2346899999998876 2245789999887643
Q ss_pred C
Q 021567 205 P 205 (311)
Q Consensus 205 P 205 (311)
+
T Consensus 281 ~ 281 (375)
T 4auk_A 281 K 281 (375)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00051 Score=63.26 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=68.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH---HHHHcCCCcEEEEEc-cccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD---SLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~---~a~~~~~~Nv~f~~~-Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||||||++|.++...+.......|+|+|+-..... ..+..+...|.|..+ |+..+ + +..+|.|++
T Consensus 94 ~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l-----~--~~~~D~ivc 166 (321)
T 3lkz_A 94 PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYR-----P--SECCDTLLC 166 (321)
T ss_dssp CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSS-----C--CCCCSEEEE
T ss_pred CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhC-----C--CCCCCEEEE
Confidence 356999999999999999988876668999997321000 001122234888887 87665 2 356888887
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEEeCc
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQSDI 241 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~tD~ 241 (311)
..-..-+...-...|- -..|+-+.++|++| |.|+++.=.
T Consensus 167 DigeSs~~~~ve~~Rt--l~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 167 DIGESSSSAEVEEHRT--IRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp CCCCCCSCHHHHHHHH--HHHHHHHHHHHTTCCCEEEEEESC
T ss_pred ECccCCCChhhhhhHH--HHHHHHHHHHhccCCCcEEEEEcC
Confidence 6421111100011122 24778888999999 999988643
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00015 Score=64.89 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=69.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH---HHHHcCCCcEEEEEc-cccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD---SLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~---~a~~~~~~Nv~f~~~-Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||||||++|.++...+.+.....|+|+|+-....+ ..+..|...++|.++ |...+ ++..+|.|..
T Consensus 78 ~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~-------~~~~~Dtllc 150 (267)
T 3p8z_A 78 PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYL-------PPEKCDTLLC 150 (267)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGC-------CCCCCSEEEE
T ss_pred CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeec-------CCccccEEEE
Confidence 356999999999999999988876668999997321110 012345567999999 98655 2466899887
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..-..-+...-...|- -+.|+-+.++|++ |.|+++.
T Consensus 151 DIgeSs~~~~vE~~Rt--lrvLela~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 151 DIGESSPSPTVEESRT--IRVLKMVEPWLKN-NQFCIKV 186 (267)
T ss_dssp CCCCCCSCHHHHHHHH--HHHHHHHGGGCSS-CEEEEEE
T ss_pred ecCCCCCChhhhhhHH--HHHHHHHHHhccc-CCEEEEE
Confidence 6422111100011122 2478888999999 7888875
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00048 Score=62.27 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=60.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC----CeEEEEchHHHHHHHHHHc-CC-CcE---EEEEc-cccchhhhhhccCCCc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD----LNFLGLELVTHCRDSLQLS-GI-TNG---YFIAT-NATSTFRSIVASYPGK 194 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~----~~vvGiDi~~~a~~~a~~~-~~-~Nv---~f~~~-Da~~ll~~~~~~~~~s 194 (311)
++..|||+||+.|.++...+++.+- ..++|+|+ . .... .+ .++ .|.++ |..++ .+..
T Consensus 73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P~~~~~~Gv~~i~~~~G~Df~~~-------~~~~ 139 (269)
T 2px2_A 73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEPMLMQSYGWNIVTMKSGVDVFYK-------PSEI 139 (269)
T ss_dssp CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCCCCCCSTTGGGEEEECSCCGGGS-------CCCC
T ss_pred CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCCCcccCCCceEEEeeccCCccCC-------CCCC
Confidence 4789999999999999999987221 23455552 0 0001 01 233 55556 87764 3557
Q ss_pred EeEEEEeCCCCCCCCchhh---hhhhHHHHHHHHHhcccCCe-EEEEEeC
Q 021567 195 LILVSIQCPNPDFNRPEHR---WRMVQRSLVEAVSDLLVHDG-KVFLQSD 240 (311)
Q Consensus 195 ~D~V~i~fpdP~~k~~h~k---rRl~~~~~l~~i~rvLkpGG-~l~~~tD 240 (311)
+|+|...... ...+.. -|.+ ..|+-+.++|+||| .|+++.=
T Consensus 140 ~DvVLSDMAP---nSG~~~vD~~Rs~--~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 140 SDTLLCDIGE---SSPSAEIEEQRTL--RILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CSEEEECCCC---CCSCHHHHHHHHH--HHHHHHHHHHTTCCSEEEEEES
T ss_pred CCEEEeCCCC---CCCccHHHHHHHH--HHHHHHHHHhhcCCcEEEEEEC
Confidence 9999876532 222211 1222 25677779999999 8888763
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0025 Score=59.87 Aligned_cols=77 Identities=12% Similarity=-0.002 Sum_probs=60.3
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccC--CCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY--PGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~--~~s~D~V~i~ 201 (311)
++.++||..||.|..+..++++ .|+.+++|+|..+.|++.+++...+++.+++++..++. ..++.. .+++|.|.+.
T Consensus 57 pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~-~~L~~~g~~~~vDgILfD 135 (347)
T 3tka_A 57 PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALG-EYVAERDLIGKIDGILLD 135 (347)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHH-HHHHHTTCTTCEEEEEEE
T ss_pred CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHH-HHHHhcCCCCcccEEEEC
Confidence 4689999999999999999988 57889999999999988874323367999999988873 333211 2369999876
Q ss_pred C
Q 021567 202 C 202 (311)
Q Consensus 202 f 202 (311)
.
T Consensus 136 L 136 (347)
T 3tka_A 136 L 136 (347)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0022 Score=65.43 Aligned_cols=126 Identities=14% Similarity=0.168 Sum_probs=79.3
Q ss_pred CCeEEEEeccccHHHHHHHhh-------CCC-----CeEEEEch---HHHHHHHHH--------------Hc------C-
Q 021567 126 QPLVVDIGSGNGLFLLGMARK-------RKD-----LNFLGLEL---VTHCRDSLQ--------------LS------G- 169 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~-------~p~-----~~vvGiDi---~~~a~~~a~--------------~~------~- 169 (311)
.-+|+|+|+|+|...+.+.+. +|+ .+|+.+|. ...-++++. +. |
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 458999999999998887553 232 57999994 322222211 10 1
Q ss_pred ----C----CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 170 ----I----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 170 ----~----~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
+ -.+.++.+|+.+.++.+-...++.+|.+++.=-.|- |.+ .+-+++++..+.++++|||.+.-.+-
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~-~np----~~w~~~~~~~l~~~~~~g~~~~t~~~- 212 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA-KNP----DMWNEQLFNAMARMTRPGGTFSTFTA- 212 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CC----TTCSHHHHHHHHHHEEEEEEEEESCC-
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCC-CCh----hhhhHHHHHHHHHHhCCCCEEEeccC-
Confidence 1 147789999998876431112578999987411110 000 12236999999999999999875442
Q ss_pred HHHHHHHHHHHHhcCCCce
Q 021567 242 EEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 242 ~~~~~~~~~~l~~~g~~~~ 260 (311)
...+.+.+.+.|+...
T Consensus 213 ---~~~vr~~l~~aGf~~~ 228 (689)
T 3pvc_A 213 ---AGFVRRGLQQAGFNVT 228 (689)
T ss_dssp ---CHHHHHHHHHTTCEEE
T ss_pred ---cHHHHHHHHhCCeEEE
Confidence 2356677788887543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0028 Score=59.96 Aligned_cols=58 Identities=14% Similarity=-0.013 Sum_probs=46.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-CCCcEEEEEccccch
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATST 183 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~~~Nv~f~~~Da~~l 183 (311)
+..|||||.|.|.++..|+++....++++||+.......+++. ..+|+.++.+|+..+
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 4789999999999999999874446899999877665555432 246899999999775
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0016 Score=59.57 Aligned_cols=40 Identities=30% Similarity=0.350 Sum_probs=33.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 166 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~ 166 (311)
++.+|||++||+|.+++.+++. +.+++|+|+++.+.+.++
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 5789999999999999999887 579999998765554443
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.009 Score=59.34 Aligned_cols=128 Identities=14% Similarity=0.086 Sum_probs=76.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-------------CCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-------------KDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSI 187 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-------------p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~ 187 (311)
.+.+|+|-+||||.|++...+.. ....+.|+|+...+...+ .-+|..+-.+.++|....-. .
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~-~ 295 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPL-R 295 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCG-G
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCch-h
Confidence 45689999999999998876531 135799999755443333 34566656677888765310 0
Q ss_pred hccCCCcEeEEEEeCCCCCCCCchh--hhh--------hhHHHHHHHHHhccc-------CCeEEEEEeCcHHH-----H
Q 021567 188 VASYPGKLILVSIQCPNPDFNRPEH--RWR--------MVQRSLVEAVSDLLV-------HDGKVFLQSDIEEV-----M 245 (311)
Q Consensus 188 ~~~~~~s~D~V~i~fpdP~~k~~h~--krR--------l~~~~~l~~i~rvLk-------pGG~l~~~tD~~~~-----~ 245 (311)
-......||.|..| +|+-.+... ..+ -..-.|+..+.+.|| |||++.+.+.+-.+ .
T Consensus 296 ~~~~~~~fD~Il~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~ 373 (530)
T 3ufb_A 296 EMGDKDRVDVILTN--PPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGIS 373 (530)
T ss_dssp GCCGGGCBSEEEEC--CCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHH
T ss_pred hhcccccceEEEec--CCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchH
Confidence 01123579999998 343211100 000 112467888888887 79999987644322 2
Q ss_pred HHHHHHHHhc
Q 021567 246 LRMKQQFLEY 255 (311)
Q Consensus 246 ~~~~~~l~~~ 255 (311)
..+++.+.+.
T Consensus 374 ~~iRk~Lle~ 383 (530)
T 3ufb_A 374 ARIKEELLKN 383 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 3455656554
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0075 Score=56.50 Aligned_cols=129 Identities=10% Similarity=0.047 Sum_probs=77.9
Q ss_pred CeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
.+++|+.||.|.+.+.+.+..-. ..+.++|+.+.|.+..+.+ .++..++++|+.++....++ ...+|+++..+|-.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N-~~~~~~~~~Di~~~~~~~~~--~~~~D~l~~gpPCq 79 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN-FPHTQLLAKTIEGITLEEFD--RLSFDMILMSPPCQ 79 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-CTTSCEECSCGGGCCHHHHH--HHCCSEEEECCC--
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHh-ccccccccCCHHHccHhHcC--cCCcCEEEEcCCCc
Confidence 47999999999999999887321 3699999999888887655 34556889999887432221 22589999988754
Q ss_pred CCCCchhhhhh------hHHHHHHHHHhccc--CCeEEEE-EeC--cHHHHHHHHHHHHhcCCCc
Q 021567 206 DFNRPEHRWRM------VQRSLVEAVSDLLV--HDGKVFL-QSD--IEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 206 ~~k~~h~krRl------~~~~~l~~i~rvLk--pGG~l~~-~tD--~~~~~~~~~~~l~~~g~~~ 259 (311)
-+.....++.. .-.++++ +.+.++ |.-.++= +.. ....++.+++.|++.|+..
T Consensus 80 ~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v 143 (343)
T 1g55_A 80 PFTRIGRQGDMTDSRTNSFLHILD-ILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQY 143 (343)
T ss_dssp ----------------CHHHHHHH-HGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEE
T ss_pred chhhcCCcCCccCccchHHHHHHH-HHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCee
Confidence 44322111111 1123333 444556 7654441 111 1245677888888888754
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.01 Score=54.77 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=65.7
Q ss_pred CCCCeEEEEec------cccHHHHHHHhhCCC-CeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 124 PAQPLVVDIGS------GNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 124 ~~~~~vLDIGc------GtG~~~~~lA~~~p~-~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
|.+.+|||+|+ ..|.+ .+.+..|. ..++++|+.+.. ...+ .++++|..... ..+.+|
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-------sda~-~~IqGD~~~~~------~~~k~D 171 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-------SDAD-STLIGDCATVH------TANKWD 171 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-------CSSS-EEEESCGGGEE------ESSCEE
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-------cCCC-eEEEccccccc------cCCCCC
Confidence 56889999995 78884 44455776 699999984421 1123 45999976541 257899
Q ss_pred EEEEeCCCCCCCCchhhh-hh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 197 LVSIQCPNPDFNRPEHRW-RM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~kr-Rl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+|...+.++--.....-+ |. +-+..++-+.++|+|||.|+++.
T Consensus 172 LVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 172 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp EEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 998876433222111111 11 23667777889999999999974
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.027 Score=53.43 Aligned_cols=129 Identities=12% Similarity=0.037 Sum_probs=83.0
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc---cCCCcEeEEEEeCC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA---SYPGKLILVSIQCP 203 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~---~~~~s~D~V~i~fp 203 (311)
-+++|+-||.|.+.+.+.+.. -..+.++|+.+.|.+..+.+ .++..++++|+.++....+. .....+|+|+..+|
T Consensus 3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N-~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAIN-FPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHH-CTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHh-CCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 369999999999999998873 22467999998888776544 45778899999887432110 02467999999887
Q ss_pred CCCCCCchhh-----hhhhHHHHHHHHHhcccCCeEEE------EEeCcHHHHHHHHHHHHhcCCCc
Q 021567 204 NPDFNRPEHR-----WRMVQRSLVEAVSDLLVHDGKVF------LQSDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 204 dP~~k~~h~k-----rRl~~~~~l~~i~rvLkpGG~l~------~~tD~~~~~~~~~~~l~~~g~~~ 259 (311)
-.-+.....+ |.-+-..+++ +.+.++|.-.++ +..+...+++.++ .|++.|+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~-~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v 145 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYR-LVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI 145 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHH-HHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred CCCcccccCCCCCCchHHHHHHHHH-HHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence 6555422111 1111133443 334467876554 2234455777888 889888765
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0068 Score=61.54 Aligned_cols=125 Identities=15% Similarity=0.113 Sum_probs=77.3
Q ss_pred CCeEEEEeccccHHHHHHHhh-------CCC-----CeEEEEch---HHHHHHHHH--------------Hc------C-
Q 021567 126 QPLVVDIGSGNGLFLLGMARK-------RKD-----LNFLGLEL---VTHCRDSLQ--------------LS------G- 169 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~-------~p~-----~~vvGiDi---~~~a~~~a~--------------~~------~- 169 (311)
.-+|+|+|+|+|...+...+. +|+ .+|+++|. +..-++++- +. +
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 458999999999987776443 232 46999994 332222111 00 1
Q ss_pred --------CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 170 --------ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 170 --------~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
--.+.+..+|+.+.++.+-...+..+|.+++.--.| .+.+ .+=+.+++..++++++|||.+.-.+-.
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p---~~np--~~w~~~~~~~l~~~~~~g~~~~t~~~~ 221 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP---AKNP--DMWTQNLFNAMARLARPGGTLATFTSA 221 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG---GGCG--GGSCHHHHHHHHHHEEEEEEEEESCCC
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCC---cCCh--hhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence 113667889999887643111246799998742111 1100 233479999999999999998754432
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 021567 242 EEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 242 ~~~~~~~~~~l~~~g~~~ 259 (311)
..+.+.+.+.|+..
T Consensus 222 ----~~vr~~L~~aGf~v 235 (676)
T 3ps9_A 222 ----GFVRRGLQDAGFTM 235 (676)
T ss_dssp ----HHHHHHHHHHTCEE
T ss_pred ----HHHHHHHHhCCeEE
Confidence 35566677777643
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.049 Score=49.10 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=71.5
Q ss_pred CCeEEEEeccccHHHHHHHhh-------CCCCeEEEEch-------HH--------------------HHHHHHH-----
Q 021567 126 QPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLEL-------VT--------------------HCRDSLQ----- 166 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~-------~p~~~vvGiDi-------~~--------------------~a~~~a~----- 166 (311)
...++|+||-.|..+..+|.. .++.+++|.|. .+ .-++++.
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 468999999999999987652 46789999992 00 1122211
Q ss_pred --HcCC--CcEEEEEccccchhhhhhcc-CCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 167 --LSGI--TNGYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 167 --~~~~--~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
..+. +|+.++.|++.+.++.++.. +...+|.+++.. |- . .-....++.+...|+|||.+++
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D~------Y---~~t~~~le~~~p~l~~GGvIv~ 215 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-DL------Y---EPTKAVLEAIRPYLTKGSIVAF 215 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-CC------H---HHHHHHHHHHGGGEEEEEEEEE
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-cc------c---chHHHHHHHHHHHhCCCcEEEE
Confidence 1232 68999999999987765432 345799999874 21 0 0124678999999999999987
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.021 Score=52.03 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=54.5
Q ss_pred CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhh------h---h---hh--HHHHHHHHHhcccCCeEEE
Q 021567 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR------W---R---MV--QRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 171 ~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~k------r---R---l~--~~~~l~~i~rvLkpGG~l~ 236 (311)
.++.++++|+.+.+.. + ++++||+|+.+ .|+....... . + .. ...+++++.++|+|||.++
T Consensus 20 ~~~~i~~gD~~~~l~~-l--~~~s~DlIvtd--PPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~ 94 (297)
T 2zig_A 20 GVHRLHVGDAREVLAS-F--PEASVHLVVTS--PPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLV 94 (297)
T ss_dssp -CEEEEESCHHHHHTT-S--CTTCEEEEEEC--CCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCEEEECcHHHHHhh-C--CCCceeEEEEC--CCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 4689999999986542 2 47899999887 3443211100 0 0 11 1457789999999999999
Q ss_pred EEeCcH-------------HHHHHHHHHHHhcCCCc
Q 021567 237 LQSDIE-------------EVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 237 ~~tD~~-------------~~~~~~~~~l~~~g~~~ 259 (311)
+..++. .+...+.+.+++.|+..
T Consensus 95 i~~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~ 130 (297)
T 2zig_A 95 IVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDN 130 (297)
T ss_dssp EEECCEEEECC----EEEECHHHHHHHHHHHTTCEE
T ss_pred EEECCCccccccCCcccccccHHHHHHHHHHcCCee
Confidence 886532 13345667788888743
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.034 Score=51.48 Aligned_cols=84 Identities=17% Similarity=0.082 Sum_probs=55.5
Q ss_pred CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCc--------hhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP--------EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 171 ~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~--------h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
++..++++|+.+.+.. + ++++||+|++. .|+.... +...-......+++++++|+|||.+++..++.
T Consensus 13 ~~~~ii~gD~~~~l~~-l--~~~svDlI~tD--PPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 13 SNGSMYIGDSLELLES-F--PEESISLVMTS--PPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp SSEEEEESCHHHHGGG-S--CSSCEEEEEEC--CCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCceEEeCcHHHHHhh-C--CCCCeeEEEEC--CCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 4578999999886542 3 47899999886 3332221 00001112578889999999999999987754
Q ss_pred ----------HHHHHHHHHHHhcCCCc
Q 021567 243 ----------EVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 243 ----------~~~~~~~~~l~~~g~~~ 259 (311)
.....+++.+++.|+..
T Consensus 88 ~~~g~~~~~~~~~~~i~~~~~~~Gf~~ 114 (323)
T 1boo_A 88 YMKGVPARSIYNFRVLIRMIDEVGFFL 114 (323)
T ss_dssp EETTEEEECCHHHHHHHHHHHTTCCEE
T ss_pred ecCCCcccccchHHHHHHHHHhCCCEE
Confidence 12445566677888643
|
| >1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.012 Score=56.18 Aligned_cols=96 Identities=24% Similarity=0.445 Sum_probs=65.6
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCc-eeEEEcchhhHHHHH-hhccchhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGT-CNVTVIGSMACKAIA-KVSSSIFG 82 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~s~~~ 82 (311)
.+|--|| ++..+..+|.|+|-||.-.--.+++..|...+++.++..++.. ..+...|+.+++.-. ++.+ -
T Consensus 291 m~lDIGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~t~~~~~sivGGGDt~aav~~~g~~d---~ 367 (398)
T 1vpe_A 291 MGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLED---K 367 (398)
T ss_dssp EEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHTTCGG---G
T ss_pred EeeecCHHHHHHHHHHHhhCCEEEEECCcccccCchHHHHHHHHHHHHHhhccCCCEEEECCcHHHHHHHHcCCcC---C
Confidence 3555566 5688999999999999987777899999999999999976443 444444555443322 2211 1
Q ss_pred hhhhh-hhhhhhhhhhhccCCCchhhh
Q 021567 83 LNMVE-SGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 83 ~~~fe-~~a~~wd~~~~r~~~~~~~l~ 108 (311)
.+|.. +.....+++-|+..|+..++.
T Consensus 368 ~shiSTGGGA~Le~LeGk~LPgv~aL~ 394 (398)
T 1vpe_A 368 FSHVSTGGGASLEFLEGKELPGIASMR 394 (398)
T ss_dssp SSEEESCHHHHHHHHTSSCCHHHHTSC
T ss_pred ccEEeCChHHHHHHHcCCCCcHHHHHH
Confidence 22332 356788888888888875443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.054 Score=50.56 Aligned_cols=98 Identities=17% Similarity=0.152 Sum_probs=64.8
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+..||-+|+|. |..+.++|+..--..++++|.++..++.+++.|.+.+ +..+-.++.+......++.+|.|+-.-.
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHV--INSKTQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEE--ecCCccCHHHHHHHhcCCCCcEEEECCC
Confidence 467899999987 8889999987532379999988877777777775432 2222122211111112347898864422
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. +..++...+.|++||++.+.
T Consensus 268 ~--------------~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 268 S--------------PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp C--------------HHHHHHHHHTEEEEEEEEEC
T ss_pred C--------------HHHHHHHHHHHhcCCEEEEe
Confidence 1 25688889999999999874
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.098 Score=47.77 Aligned_cols=193 Identities=14% Similarity=0.108 Sum_probs=110.8
Q ss_pred HHHHHHHhhhhcCceeEEEcchhhHHHHHhhccc--hhhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCC
Q 021567 46 SKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS--IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHD 123 (311)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s--~~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~ 123 (311)
..|.++|+-+.+-..-++++-.-|....=.+++. ...-+.-+++.++|+. .....+....+ .+....+.
T Consensus 21 ~vL~~~l~~l~~K~kp~~~iDTHAG~G~Y~L~~~~a~ktgE~~~GI~rl~~~-~~~~p~~l~~y-------f~~l~~~n- 91 (283)
T 2oo3_A 21 ITLTRLLAYLTHKDKPLFYLETHSGRGIYDLKDKQSLKTEEYKEGINPVWLD-RENLPSLFLEY-------ISVIKQIN- 91 (283)
T ss_dssp HHHHHHHHHHTTSSSCCEEEESCCTTSEEETTCC----CCGGGGTHHHHHHT-GGGSCGGGHHH-------HHHHHHHS-
T ss_pred HHHHHHHHHHhcCCCCeEEEEcCCCcCccCCCChHHhhcHHHHHHHHHHHhc-ccCCcHHHHHH-------HHHHHHhc-
Confidence 3577788888776666666533232221111110 0111123456666664 11111111111 12222232
Q ss_pred CCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 124 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 124 ~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+..+||+=+|||.+++.+.+. ..+++.+|....+.+.++++ ..+++++++.|+...+....+ +...+|+|++
T Consensus 92 --~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~-~~~~fdLVfi- 165 (283)
T 2oo3_A 92 --LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP-PPEKRGLIFI- 165 (283)
T ss_dssp --SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS-CTTSCEEEEE-
T ss_pred --CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC-CCCCccEEEE-
Confidence 356899999999999999884 57999999988888777643 235799999999887655443 3456999876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHh--cccCCeEEEEEe--CcHHHHHHHHHHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQS--DIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~r--vLkpGG~l~~~t--D~~~~~~~~~~~l~~~g~~~~ 260 (311)
||-...+. ...+.++.+.+ .+.|+|.+.+-- -...-.+.+.+.+++.+...+
T Consensus 166 --DPPYe~k~-----~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~~~l 221 (283)
T 2oo3_A 166 --DPSYERKE-----EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSV 221 (283)
T ss_dssp --CCCCCSTT-----HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEE
T ss_pred --CCCCCCCc-----HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCCCeE
Confidence 45332111 11344544443 467899988742 223445678888877665433
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.072 Score=47.52 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=51.1
Q ss_pred EEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCC-c-------hhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 173 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-P-------EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 173 v~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~-~-------h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
..++++|+.+.+.. + ++++||+|++. .|+... . +...-......++++.++|+|||.+++..+...
T Consensus 5 ~~l~~gD~~~~l~~-l--~~~~vdlI~~D--PPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~- 78 (260)
T 1g60_A 5 NKIHQMNCFDFLDQ-V--ENKSVQLAVID--PPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFN- 78 (260)
T ss_dssp SSEEECCHHHHHHH-S--CTTCEEEEEEC--CCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHH-
T ss_pred CeEEechHHHHHHh-c--cccccCEEEEC--CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHH-
Confidence 45789999887654 3 46899999876 333322 1 000001225778889999999999999865433
Q ss_pred HHHHHHHHHhcCCC
Q 021567 245 MLRMKQQFLEYGKG 258 (311)
Q Consensus 245 ~~~~~~~l~~~g~~ 258 (311)
...+...+.+.|+.
T Consensus 79 ~~~~~~~~~~~gf~ 92 (260)
T 1g60_A 79 CAFICQYLVSKGMI 92 (260)
T ss_dssp HHHHHHHHHHTTCE
T ss_pred HHHHHHHHHhhccc
Confidence 23445566677764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.025 Score=50.59 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=33.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 166 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~ 166 (311)
++.+|||..||+|..+.+.++. +.+++|+|+.+.+.+.++
T Consensus 212 ~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp TTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 5789999999999999998887 579999998765554443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.085 Score=48.98 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=64.1
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEcc---ccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATN---ATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~D---a~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+||-+|+|. |..++++|+.. +. +++++|.++.-++.+++.|.+.+ +..+ ..+....+.......+|.|+
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLV--LQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEE--EECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEE--EcCcccccchHHHHHHHHhCCCCCEEE
Confidence 467899999986 88899999876 45 89999988777777777776532 2222 12221111110124588886
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.-.. +..++...+.|+|||++.+.
T Consensus 248 d~~g~--------------~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 248 ECTGA--------------EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp ECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred ECCCC--------------hHHHHHHHHHhcCCCEEEEE
Confidence 54221 25678888999999999874
|
| >3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.026 Score=54.11 Aligned_cols=92 Identities=27% Similarity=0.493 Sum_probs=60.7
Q ss_pred eccCCc-----hhhHhhhhceeEEEccc-cccccccccchhHHHHHHHhhhhcCc-eeEEEcchhhHHHHH-hhccchhh
Q 021567 11 ILGQGP-----WKRLLLQLQNVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGT-CNVTVIGSMACKAIA-KVSSSIFG 82 (311)
Q Consensus 11 ~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~s~~~ 82 (311)
+|--|| ++..|..+|.|+|-||. -|.+ +++..|...+++.++.+++.. ..+...|+++++.-. ++.+..+
T Consensus 314 ~lDiGp~T~~~~~~~i~~akTIvWNGP~GvFE~-~~Fa~GT~~va~aia~~t~~~a~sIvGGGDt~aav~~~g~~d~~s- 391 (417)
T 3oz7_A 314 GLDAGPKSIENYKDVILTSKTVIWNGPQGVFEM-PNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEIS- 391 (417)
T ss_dssp EEEECHHHHHHHHHHHHTCSEEEEESCSBCTTS-STTTHHHHHHHHHHHHHHHHTCEEEECSHHHHHHHHHTTCGGGSS-
T ss_pred eeecCHHHHHHHHHHHHhCCEEEEECCCccccc-cchhHHHHHHHHHHHhhccCCCEEEEcCcHHHHHHHHcCCcCCcc-
Confidence 455566 46789999999999999 6887 789999999999999887544 444445555443322 3322211
Q ss_pred hhhhhhhhhhhhhhhhccCCCch
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVS 105 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~ 105 (311)
| ...+.....+++-|+..|+..
T Consensus 392 h-iSTGGGA~Le~LeGk~LPgv~ 413 (417)
T 3oz7_A 392 H-VSTGGGASLELLEGKELPGVL 413 (417)
T ss_dssp E-ECSCSHHHHHHHTTCCCHHHH
T ss_pred E-EcCChHHHHHHHcCCCCccee
Confidence 1 122345667777777777653
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.66 E-value=0.32 Score=45.12 Aligned_cols=125 Identities=12% Similarity=0.051 Sum_probs=78.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..+++|+.||.|.+.+.+.+.. -..+.++|+...|.+..+.+- ++.. ++|+.++....+ ..+|+++..+|-.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~-~~~~--~~Di~~~~~~~~----~~~D~l~~gpPCQ 82 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNF-GEKP--EGDITQVNEKTI----PDHDILCAGFPCQ 82 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHH-SCCC--BSCGGGSCGGGS----CCCSEEEEECCCT
T ss_pred CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHc-CCCC--cCCHHHcCHhhC----CCCCEEEECCCCC
Confidence 4689999999999999998763 235888999888877765542 1211 688888743322 2589999998866
Q ss_pred CCCCchhhh-----h-hhHHHHHHHHHhcccCCeEEEEE-------eCcHHHHHHHHHHHHhcCCCce
Q 021567 206 DFNRPEHRW-----R-MVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 206 ~~k~~h~kr-----R-l~~~~~l~~i~rvLkpGG~l~~~-------tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
-+.....++ | .+-.++++-+ +.++|.-. ++. .+....++.+++.|++.|+...
T Consensus 83 ~fS~ag~~~g~~d~r~~L~~~~~r~i-~~~~P~~~-~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~ 148 (327)
T 2c7p_A 83 AFSISGKQKGFEDSRGTLFFDIARIV-REKKPKVV-FMENVKNFASHDNGNTLEVVKNTMNELDYSFH 148 (327)
T ss_dssp TTCTTSCCCGGGSTTSCHHHHHHHHH-HHHCCSEE-EEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCE
T ss_pred CcchhcccCCCcchhhHHHHHHHHHH-HhccCcEE-EEeCcHHHHhccccHHHHHHHHHHHhCCCEEE
Confidence 554321111 1 1113444433 34678643 332 1223467788889999987543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.15 Score=47.30 Aligned_cols=128 Identities=10% Similarity=0.010 Sum_probs=78.8
Q ss_pred CCeEEEEeccccHHHHHHHhhC-CCCeE-EEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR-KDLNF-LGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~-p~~~v-vGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
..+++|+-||.|.+.+.+.+.. +-..+ .++|+.+.|.+..+.+-. +. ++++|+.++....++ ...+|+++..+|
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-~~-~~~~DI~~~~~~~i~--~~~~Dil~ggpP 85 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-EE-VQVKNLDSISIKQIE--SLNCNTWFMSPP 85 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-CC-CBCCCTTTCCHHHHH--HTCCCEEEECCC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-CC-cccCChhhcCHHHhc--cCCCCEEEecCC
Confidence 4589999999999999998763 22345 799999888877654422 22 668898887433332 236899999988
Q ss_pred CCCC--CCchhhhhh--hHHHHHHHHHh----cc--cCCeEEEEEeCc-----HHHHHHHHHHHHhcCCCc
Q 021567 204 NPDF--NRPEHRWRM--VQRSLVEAVSD----LL--VHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 204 dP~~--k~~h~krRl--~~~~~l~~i~r----vL--kpGG~l~~~tD~-----~~~~~~~~~~l~~~g~~~ 259 (311)
-.-+ .....++.. .+..++.++.+ .+ +|.- +++. +. ...++.+++.|++.|+..
T Consensus 86 CQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~-~~lE-NV~gl~~~~~~~~i~~~l~~~GY~v 154 (327)
T 3qv2_A 86 CQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKH-IFIE-NVPLFKESLVFKEIYNILIKNQYYI 154 (327)
T ss_dssp CTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSE-EEEE-ECGGGGGSHHHHHHHHHHHHTTCEE
T ss_pred ccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCE-EEEE-chhhhcChHHHHHHHHHHHhCCCEE
Confidence 7666 211000000 11134444444 44 4643 3332 12 235678888899988754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.074 Score=49.04 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=66.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+..||=+|+|. |..++++|+.....+++++|.++.-++.+++.|.+.+.-...|..+.+.... ....+|.++-.-.
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t--~g~g~d~v~d~~G 248 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELT--GGQGATAVFDFVG 248 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHH--GGGCEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHh--CCCCCeEEEECCC
Confidence 467889899976 8888999987656899999998887788877776543211112111111111 1236888765422
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. +..++...+.|++||++.+.
T Consensus 249 ~--------------~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 249 A--------------QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp C--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred C--------------HHHHHHHHHHHhcCCEEEEE
Confidence 2 25788899999999999874
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.12 Score=47.62 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=65.1
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+..||=+|+|. |..+.++|+.. +.+++++|.++.-++.+++.|.+.+ +..+-.+..+.... ..+.+|.++....
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~--i~~~~~~~~~~~~~-~~g~~d~vid~~g 241 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVA--VNARDTDPAAWLQK-EIGGAHGVLVTAV 241 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEE--EETTTSCHHHHHHH-HHSSEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEE--EeCCCcCHHHHHHH-hCCCCCEEEEeCC
Confidence 467788899986 99999999876 5699999998877777777775432 22222222111111 1236888865432
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...++...+.|+|||++.+.
T Consensus 242 ~--------------~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 242 S--------------PKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp C--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred C--------------HHHHHHHHHHhccCCEEEEe
Confidence 2 36788889999999999874
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.28 Score=39.05 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=69.5
Q ss_pred CeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..++=+||| .++..+|+. ..+..++++|..+...+.+++. .+.++.+|+.+. +.+-...-...|.+++..|+
T Consensus 8 ~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~---g~~~i~gd~~~~-~~l~~a~i~~ad~vi~~~~~ 81 (140)
T 3fwz_A 8 NHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRER---GVRAVLGNAANE-EIMQLAHLECAKWLILTIPN 81 (140)
T ss_dssp SCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT---TCEEEESCTTSH-HHHHHTTGGGCSEEEECCSC
T ss_pred CCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc---CCCEEECCCCCH-HHHHhcCcccCCEEEEECCC
Confidence 467778885 455554443 2367899999988777776654 456888998764 11111112467888877665
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
+. . ...+-...+.+.|+..++....+..+. +.+.+.|..
T Consensus 82 ~~----------~-n~~~~~~a~~~~~~~~iiar~~~~~~~----~~l~~~G~d 120 (140)
T 3fwz_A 82 GY----------E-AGEIVASARAKNPDIEIIARAHYDDEV----AYITERGAN 120 (140)
T ss_dssp HH----------H-HHHHHHHHHHHCSSSEEEEEESSHHHH----HHHHHTTCS
T ss_pred hH----------H-HHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHCCCC
Confidence 41 1 123444667788999988888776554 345566654
|
| >1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.04 Score=52.40 Aligned_cols=94 Identities=27% Similarity=0.495 Sum_probs=61.9
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchhhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIFGL 83 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~~~ 83 (311)
.+|--|| ++..+..+|.|+|-||.-.--.+++..|...+++.++.. .....+...|+.+++.-. ++.+ -.
T Consensus 291 m~lDiGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~-~~~~sivGGGDt~aav~~~g~~d---~~ 366 (394)
T 1php_A 291 SALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEA-LDTYSVIGGGDSAAAVEKFGLAD---KM 366 (394)
T ss_dssp EEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHC-TTCEEEECSHHHHHHHHHTTCGG---GS
T ss_pred EeeecCHHHHHHHHHHHhhCCEEEEeCCcccccCchHHHHHHHHHHHHHhc-CCCEEEECChHHHHHHHHcCCCC---Cc
Confidence 3555566 567899999999999997766789999999999999985 222344444444443322 2211 12
Q ss_pred hhh-hhhhhhhhhhhhccCCCchhh
Q 021567 84 NMV-ESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 84 ~~f-e~~a~~wd~~~~r~~~~~~~l 107 (311)
+|. .+.....+++-|+..|+..++
T Consensus 367 shiSTGGGA~Le~LeGk~LPgv~aL 391 (394)
T 1php_A 367 DHISTGGGASLEFMEGKQLPGVVAL 391 (394)
T ss_dssp SEECSCTHHHHHHHTTCCCHHHHTS
T ss_pred cEEeCChHHHHHHHcCCCcchHHHh
Confidence 222 235677888888887776443
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.053 Score=51.23 Aligned_cols=107 Identities=11% Similarity=-0.021 Sum_probs=64.5
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccc----hhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATS----TFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~----ll~~~~~~~~~s~D~V~ 199 (311)
.+.+||-+|||. |.+++++|+...-.+++++|.++..++.+++.|.+ .+..+-.+ .+.... ....+|.|+
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~i~~~~~~~~~~~~~~~~--~g~g~Dvvi 259 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE---TIDLRNSAPLRDQIDQIL--GKPEVDCGV 259 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE---EEETTSSSCHHHHHHHHH--SSSCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---EEcCCCcchHHHHHHHHh--CCCCCCEEE
Confidence 467899999987 89999999876323899999988777777766652 33222111 112212 123689886
Q ss_pred EeCCCCCCCCchhh--hhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~k--rRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.-..+.. .+.. .-+.....++...+.|++||++.+.
T Consensus 260 d~~g~~~~--~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 260 DAVGFEAH--GLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp ECSCTTCB--CSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred ECCCCccc--cccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 54332210 0000 0000014678888999999998753
|
| >16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.031 Score=53.44 Aligned_cols=96 Identities=25% Similarity=0.413 Sum_probs=62.8
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhc--CceeEEEcchhhHHHHH-hhccchh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQ--GTCNVTVIGSMACKAIA-KVSSSIF 81 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~s~~ 81 (311)
.+|--|| ++..+..+|.|+|-||.-.-=.+++..|...+++.++..++ ....+...|+.+++.-. ++.+..
T Consensus 309 m~lDIGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~t~~~~a~sIvGGGDt~aAv~~~G~~d~~- 387 (415)
T 16pk_A 309 MALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRM- 387 (415)
T ss_dssp EEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHTTCTTTS-
T ss_pred EEeecCHHHHHHHHHHHHhCCEEEEECCcccccCchHHHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHcCCccCc-
Confidence 3455566 56789999999999999776678999999999999999753 22444444455444322 222211
Q ss_pred hhhhhhhhhhhhhhhhhccCCCchhh
Q 021567 82 GLNMVESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 82 ~~~~fe~~a~~wd~~~~r~~~~~~~l 107 (311)
.| ...+.....+++-|+..|+..++
T Consensus 388 sh-iSTGGGA~Le~LeGk~LPgv~aL 412 (415)
T 16pk_A 388 SH-VSTGGGASLELLEGKTLPGVTVL 412 (415)
T ss_dssp SE-ECSCHHHHHHHHTTCCCHHHHTS
T ss_pred eE-EeCChHHHHHHHcCCCcchHHHh
Confidence 11 12234577888888887776443
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.098 Score=48.33 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=62.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.+||=+|+|. |..+.++|+.. +.+++++|.++.-++.+++.|.+.+. .|...+ ...+|.|+-...
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~---~~~~~~--------~~~~D~vid~~g 243 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY---TDPKQC--------KEELDFIISTIP 243 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE---SSGGGC--------CSCEEEEEECCC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec---CCHHHH--------hcCCCEEEECCC
Confidence 467888899986 88889999876 57999999877666677777765433 343222 226888865543
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+ ..++...+.|+|||++.+.
T Consensus 244 ~~--------------~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 244 TH--------------YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp SC--------------CCHHHHHTTEEEEEEEEEC
T ss_pred cH--------------HHHHHHHHHHhcCCEEEEE
Confidence 33 2467778999999999874
|
| >3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.049 Score=51.94 Aligned_cols=94 Identities=27% Similarity=0.475 Sum_probs=63.7
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccc-cccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIFG 82 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~~ 82 (311)
.+|--|| ++..|..+|.|+|-||. -|.+ +++..|...+++.++.. ....+...|+.+++.-. ++++..+
T Consensus 298 m~lDIGp~T~~~~~~~i~~akTIvWNGP~GvFE~-~~Fa~GT~~va~aia~~--~a~sIvGGGDt~aav~~~g~~d~~s- 373 (403)
T 3q3v_A 298 MGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEI-DKFSKGSIKMSHYISEG--HATSVVGGGDTADVVARAGDADEMT- 373 (403)
T ss_dssp EEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTS-GGGCHHHHHHHHHHHHS--SSEEEEESHHHHHHHHHTTCGGGSS-
T ss_pred EeeecChHHHHHHHHHHHhCCEEEEECCCccccc-cchhHHHHHHHHHHHhc--CCEEEECCcHHHHHHHHcCCcCCcc-
Confidence 3455566 46789999999999999 6887 67999999999998875 34556666666554432 3322211
Q ss_pred hhhhhhhhhhhhhhhhccCCCchhhh
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~~l~ 108 (311)
| ...+.....+++-|+..|+..++.
T Consensus 374 h-iSTGGGA~Le~LeGk~LPgv~aL~ 398 (403)
T 3q3v_A 374 F-ISTGGGASLELIEGKELPGVKALR 398 (403)
T ss_dssp E-ECCCHHHHHHHHTTCCCHHHHTTB
T ss_pred E-EcCChHHHHHHHcCCCCcHHHHHh
Confidence 1 223356678888888888875444
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.063 Score=44.84 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=65.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..-|||+|-|+|..--.|.+.+|+..++.+|..-.+.-. .-.+.=.++.+|+.+.++...+.-.....+++..+-.-
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~---~~P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g 117 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPD---STPPEAQLILGDIRETLPATLERFGATASLVHADLGGH 117 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGG---GCCCGGGEEESCHHHHHHHHHHHHCSCEEEEEECCCCS
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCC---CCCchHheecccHHHHHHHHHHhcCCceEEEEeecCCC
Confidence 456999999999999999999999999999963211111 11223458899998887542111145566666554321
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
. + .+.-.+...+-..+..+|.|||.++
T Consensus 118 ~---~-~~d~a~a~~lsplI~~~la~GGi~v 144 (174)
T 3iht_A 118 N---R-EKNDRFARLISPLIEPHLAQGGLMV 144 (174)
T ss_dssp C---H-HHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred C---c-chhHHHHHhhhHHHHHHhcCCcEEE
Confidence 1 0 1111111234446789999999875
|
| >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.057 Score=51.72 Aligned_cols=97 Identities=26% Similarity=0.390 Sum_probs=65.0
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCc-eeEEEcchhhHHHHH-hhccchhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGT-CNVTVIGSMACKAIA-KVSSSIFG 82 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~s~~~ 82 (311)
.+|--|| ++..+..+|.|+|-||.-.-=.+++..|...+++.++.+++.. ..+...|+++++.-. ++.+..+
T Consensus 239 m~lDIGp~T~~~~~~~i~~akTIvWNGPmGVFE~~~Fa~GT~~va~aia~~~~~~a~sIvGGGDt~aav~~~G~~d~~s- 317 (416)
T 1fw8_A 239 QGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKIS- 317 (416)
T ss_dssp EEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECTTHHHHHHHHTTCGGGSS-
T ss_pred EEEecCHHHHHHHHHHHhhCCEEEEECCCccccCchHHHHHHHHHHHHHhhccCCCEEEEcCcHHHHHHHHcCCCCCcc-
Confidence 3555666 5678999999999999976666789999999999999987544 455555555544322 3322211
Q ss_pred hhhhhhhhhhhhhhhhccCCCchhhh
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~~l~ 108 (311)
| ...+.....+++-|+..|+..++.
T Consensus 318 h-iSTGGGA~LE~LEGk~LPgV~aL~ 342 (416)
T 1fw8_A 318 H-VSTGGGASLELLEGKELPGVAFLS 342 (416)
T ss_dssp E-ECSCSHHHHHHHTTCCCHHHHTSC
T ss_pred e-eccccceehHhhcCCCChHHHHHH
Confidence 1 123345677788888777764443
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.21 Score=46.09 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=64.2
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~f 202 (311)
.+..||=+|+|. |..++++|+..--..++++|.++..++.+++.|.+. ++..+-.++.+..... ....+|.|+-..
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~v~~~t~g~g~D~v~d~~ 243 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD--IINYKNGDIVEQILKATDGKGVDKVVIAG 243 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCE--EECGGGSCHHHHHHHHTTTCCEEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCce--EEcCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence 467788899886 888888998753338999999877777777777643 2222222221211111 223699887543
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..| ..++...+.|+|||++.+.
T Consensus 244 g~~--------------~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 244 GDV--------------HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp SCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred CCh--------------HHHHHHHHHHhcCCEEEEe
Confidence 333 4678888999999998863
|
| >2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... | Back alignment and structure |
|---|
Probab=93.96 E-value=0.048 Score=52.23 Aligned_cols=95 Identities=24% Similarity=0.419 Sum_probs=65.0
Q ss_pred eccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCc-eeEEEcchhhHHHHH-hhccchhhh
Q 021567 11 ILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGT-CNVTVIGSMACKAIA-KVSSSIFGL 83 (311)
Q Consensus 11 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~s~~~~ 83 (311)
+|--|| ++..+..+|.|+|-||.-.--.+++..|...+++.++..++.. ..+...|+++++.-. ++.+..+ |
T Consensus 312 ~lDiGp~T~~~~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia~~t~~~a~sIvGGGDt~aav~~~g~~d~~s-h 390 (416)
T 2wzb_A 312 GLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVS-H 390 (416)
T ss_dssp EEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESTTHHHHHHHTTCTTSSS-E
T ss_pred eeecCHHHHHHHHHHHhhCCEEEEECCCcccccchHHHHHHHHHHHHHhhccCCCEEEEcCcHHHHHHHHcCCCCCce-E
Confidence 455566 5678999999999999977667789999999999999976444 455566666554432 3333221 1
Q ss_pred hhhhhhhhhhhhhhhccCCCchhh
Q 021567 84 NMVESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 84 ~~fe~~a~~wd~~~~r~~~~~~~l 107 (311)
...+.....+++-|+..|+..++
T Consensus 391 -iSTGGGA~Le~LEGk~LPgv~aL 413 (416)
T 2wzb_A 391 -VSTGGGASLELLEGKVLPGVDAL 413 (416)
T ss_dssp -EESCSHHHHHHHHTCCCHHHHTS
T ss_pred -EeCchHHHHHHHcCCCccHHHHH
Confidence 12234567888888887776443
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.19 Score=46.46 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=62.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-C---CCcEeEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-Y---PGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~---~~s~D~V~ 199 (311)
.+..||-+|+|. |..+.++|+.. +.+++++|.++..++.+++.|.+.+ +-..+..+....+... . ...+|.++
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~-~~~~~~~~~~~~i~~~~~~~~g~g~D~vi 245 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVT-LVVDPAKEEESSIIERIRSAIGDLPNVTI 245 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEE-EECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEE-EcCcccccHHHHHHHHhccccCCCCCEEE
Confidence 467888899876 88888889875 5679999988777777777776532 2111101111111110 1 23588886
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.-.. ...++...+.|+|+|++.+.
T Consensus 246 d~~g~--------------~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 246 DCSGN--------------EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp ECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred ECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 44221 24678888999999999874
|
| >1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.052 Score=51.98 Aligned_cols=95 Identities=26% Similarity=0.396 Sum_probs=63.3
Q ss_pred eccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCc-eeEEEcchhhHHHHH-hhccchhhh
Q 021567 11 ILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGT-CNVTVIGSMACKAIA-KVSSSIFGL 83 (311)
Q Consensus 11 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~s~~~~ 83 (311)
+|--|| ++..+..+|.|+|-||.-.--.+++..|...+++.++..++.. ..+...|+++++.-. ++.+..+ |
T Consensus 310 ~lDiGp~T~~~~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia~~t~~~a~sIvGGGDt~aav~~~g~~d~~s-h 388 (415)
T 1qpg_A 310 GLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKIS-H 388 (415)
T ss_dssp EEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHTCEEEECCHHHHHHHHHTTCGGGSS-E
T ss_pred eeccCHHHHHHHHHHHhhCCEEEEeCCccccccchHHHHHHHHHHHHHhhccCCCEEEECCcHHHHHHHHcCCCCCce-E
Confidence 455566 5678999999999999977666789999999999999975444 444444555443322 3322211 1
Q ss_pred hhhhhhhhhhhhhhhccCCCchhh
Q 021567 84 NMVESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 84 ~~fe~~a~~wd~~~~r~~~~~~~l 107 (311)
...+.....+++-|+..|+..++
T Consensus 389 -iSTGGGA~Le~LEGk~LPgv~aL 411 (415)
T 1qpg_A 389 -VSTGGGASLELLEGKELPGVAFL 411 (415)
T ss_dssp -ECCCTHHHHHHHTSCCCHHHHTS
T ss_pred -EeCChHHHHHHHcCCCCchHHHh
Confidence 12234567888888887776443
|
| >1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A | Back alignment and structure |
|---|
Probab=93.77 E-value=0.058 Score=51.28 Aligned_cols=94 Identities=22% Similarity=0.332 Sum_probs=60.8
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchhhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIFGL 83 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~~~ 83 (311)
.+|--|| ++..+..+|.|+|-||.-.-=.+++..|...+++.++... ....+...|+.+++.-. ++.+ .+.
T Consensus 288 m~lDiGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~~-~~~sivGGGDt~aav~~~g~~d--~~s 364 (390)
T 1v6s_A 288 MGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALE-GAFTVVGGGDSVAAVNRLGLKE--RFG 364 (390)
T ss_dssp EEEEECHHHHHHHHHHTTTCSEEEEESCSSCTTSTTTTHHHHHHHHHHHTCS-SCEEEEESHHHHHHHHTTTCGG--GSS
T ss_pred EeeecCHHHHHHHHHHHhhCCEEEEeCCcccccCchHHHHHHHHHHHHHhcC-CCEEEECChHHHHHHHHcCCcc--Cce
Confidence 3455566 5678999999999999977667799999999999999852 23444455555544322 2211 111
Q ss_pred hhhhhhhhhhhhhhhccCCCchh
Q 021567 84 NMVESGSAVWEFLKGRMLPGVSA 106 (311)
Q Consensus 84 ~~fe~~a~~wd~~~~r~~~~~~~ 106 (311)
-...+.....+++-|+..|+..+
T Consensus 365 hiSTGGGA~Le~LeGk~LPgv~a 387 (390)
T 1v6s_A 365 HVSTGGGASLEFLEKGTLPGLEV 387 (390)
T ss_dssp EECCSSSHHHHHHHHSCCHHHHT
T ss_pred EEeCChHHHHHHHcCCCcchHHH
Confidence 11122346777888877777643
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.063 Score=50.07 Aligned_cols=129 Identities=12% Similarity=0.055 Sum_probs=79.9
Q ss_pred CeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
-+++|+-||.|.+...+.+..- ...+.++|+.+.|.+..+.+ .++..++.+|+.++....++ ...+|+++..+|-.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N-~~~~~~~~~DI~~~~~~~~~--~~~~D~l~ggpPCQ 80 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHN-FPETNLLNRNIQQLTPQVIK--KWNVDTILMSPPCQ 80 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-CTTSCEECCCGGGCCHHHHH--HTTCCEEEECCCCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHh-CCCCceeccccccCCHHHhc--cCCCCEEEecCCCc
Confidence 3699999999999999987632 24578999998888776544 23456778999887443332 34689999988866
Q ss_pred CCCCchhhh-----h-hhHHHHHHHHHhccc-CCeEEEEEe-C---cHHHHHHHHHHHHhcCCCce
Q 021567 206 DFNRPEHRW-----R-MVQRSLVEAVSDLLV-HDGKVFLQS-D---IEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 206 ~~k~~h~kr-----R-l~~~~~l~~i~rvLk-pGG~l~~~t-D---~~~~~~~~~~~l~~~g~~~~ 260 (311)
-+.....++ | ..-..+++ +.+.++ |.-. ++.- . .....+.+++.|++.|+...
T Consensus 81 ~fS~ag~~~~~~d~r~~L~~~~~r-~i~~~~~P~~~-vlENV~gl~~~~~~~~i~~~l~~~GY~v~ 144 (333)
T 4h0n_A 81 PFTRNGKYLDDNDPRTNSFLYLIG-ILDQLDNVDYI-LMENVKGFENSTVRNLFIDKLKECNFIYQ 144 (333)
T ss_dssp CSEETTEECCTTCTTSCCHHHHHH-HGGGCTTCCEE-EEEECTTGGGSHHHHHHHHHHHHTTEEEE
T ss_pred chhhhhhccCCcCcccccHHHHHH-HHHHhcCCCEE-EEecchhhhhhhHHHHHHHHHHhCCCeEE
Confidence 553211111 1 11123333 333444 7533 3321 0 12346778888999887543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.49 Score=44.15 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=64.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc---cCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA---SYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~---~~~~s~D~V~i 200 (311)
.+..||=+|+|. |.+++++|+..--..++++|.++..++.+++.|.+.+ +..+-.++...... ..++.+|.|+-
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~i~~~~~~~~gg~Dvvid 259 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATAT--VDPSAGDVVEAIAGPVGLVPGGVDVVIE 259 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEE--ECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEE--ECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence 467788899876 8888899987643389999998877777777776532 22111222111111 12347898864
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.... ...++...+.|++||++.+.
T Consensus 260 ~~G~--------------~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 260 CAGV--------------AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp CSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCC--------------HHHHHHHHHHhccCCEEEEE
Confidence 4221 36788889999999999874
|
| >2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.1 Score=49.83 Aligned_cols=95 Identities=17% Similarity=0.303 Sum_probs=65.9
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchhhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIFGL 83 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~~~ 83 (311)
.+|--|| ++..+..+|.|+|-||.-.-=.+++..|...+++.++.. ....+...|+.+++.-. ++ +. ..|
T Consensus 300 m~lDiGp~T~~~~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia~~--~~~sivGGGDt~aav~~~g~-d~-~sh 375 (410)
T 2cun_A 300 QIMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIADS--PAFSVLGGGHSIASIQKYGI-TG-ITH 375 (410)
T ss_dssp CEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHS--SSEEEEECGGGGGGGGGSCC-CC-CSE
T ss_pred eeeeeCHHHHHHHHHHHhhCCEEEEECCcccccCchHHHHHHHHHHHHHhc--CCeEEECChHHHHHHHHhCC-CC-cEE
Confidence 3555566 567899999999999998766779999999999999985 33555555666554322 22 11 111
Q ss_pred hhhhhhhhhhhhhhhccCCCchhhhh
Q 021567 84 NMVESGSAVWEFLKGRMLPGVSALDR 109 (311)
Q Consensus 84 ~~fe~~a~~wd~~~~r~~~~~~~l~~ 109 (311)
...+.....+++-|+..|+..++..
T Consensus 376 -iSTGGGA~Le~LeGk~LPgv~aL~~ 400 (410)
T 2cun_A 376 -ISTGGGAMLSFFAGEELPVLRALQI 400 (410)
T ss_dssp -ECSCSHHHHHHHTTCCCHHHHHHHH
T ss_pred -EcCChHHHHHHHcCCCCcHHHHHHH
Confidence 1123458888999999998866654
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.2 Score=46.65 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=62.2
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEc----cccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~----Da~~ll~~~~~~~~~s~D~V 198 (311)
.+..||-+|+|. |..++++|+.. +. .++++|.++..++.+++.|.+.+ +-.. |..+.+.... .+.+|.|
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~~~~~---~~g~D~v 266 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGATDF-VNPNDHSEPISQVLSKMT---NGGVDFS 266 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCCEE-ECGGGCSSCHHHHHHHHH---TSCBSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhCCceE-EeccccchhHHHHHHHHh---CCCCCEE
Confidence 467899999875 88888999876 45 89999987766667777776432 1111 1111112111 2468888
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
+-.-.. ...++...+.|++| |++.+.
T Consensus 267 id~~g~--------------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 267 LECVGN--------------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp EECSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred EECCCC--------------HHHHHHHHHHhhcCCcEEEEE
Confidence 644221 25678889999999 998864
|
| >1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.14 Score=48.54 Aligned_cols=96 Identities=20% Similarity=0.378 Sum_probs=63.6
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchhhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIFGL 83 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~~~ 83 (311)
.+|--|| ++..+..+|.|+|-||.-.--.+++..|...+++.++.. ....+...|+.+++.-. ++.+. +.
T Consensus 282 m~lDiGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~--~~~sivGGGDt~aav~~~g~~d~--~s 357 (387)
T 1zmr_A 282 QILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADS--EAFSIAGGGDTLAAIDLFGIADK--IS 357 (387)
T ss_dssp EEEEECHHHHHHHHHHHHHCSEEEEESCSBCTTSGGGCHHHHHHHHHHHHS--SSEEEECSHHHHHHHHHHTCGGG--SS
T ss_pred EEeecCHHHHHHHHHHHhhCCEEEEECCcccccCchHHHHHHHHHHHHHhc--CCeEEECCHHHHHHHHHcCCccC--ce
Confidence 3455566 567899999999999997766779999999999999985 22344444444443322 22111 11
Q ss_pred hhhhhhhhhhhhhhhccCCCchhhhh
Q 021567 84 NMVESGSAVWEFLKGRMLPGVSALDR 109 (311)
Q Consensus 84 ~~fe~~a~~wd~~~~r~~~~~~~l~~ 109 (311)
-...+.....+++-|+..|+..++.+
T Consensus 358 hiSTGGGA~Le~LeGk~LPgv~aL~~ 383 (387)
T 1zmr_A 358 YISTGGGAFLEFVEGKVLPAVAMLEE 383 (387)
T ss_dssp EECCCTHHHHHHHTTCCCHHHHHHHH
T ss_pred EEeCChHHHHHHHcCCCCchHHHHHh
Confidence 11223457888888988888766553
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.32 Score=44.74 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=63.1
Q ss_pred CCeEEEEeccc-cHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccc-cchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNA-TSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da-~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+.+||-+|+|. |..++++|+.. |+.+++++|.++.-++.+++.|.+.+ +..+- .+...... ....+|.|+-..
T Consensus 171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~--~g~g~D~vid~~ 246 (344)
T 2h6e_A 171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYV--SEMKDAESLINKLT--DGLGASIAIDLV 246 (344)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEE--ECHHHHHHHHHHHH--TTCCEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEE--eccccchHHHHHhh--cCCCccEEEECC
Confidence 57899999975 78888888874 46789999988777777777775432 21111 11212211 123688886542
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. +..++...+.|+|||++.+.
T Consensus 247 g~--------------~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 247 GT--------------EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp CC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred CC--------------hHHHHHHHHHhhcCCEEEEe
Confidence 21 24678888999999998864
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.21 Score=46.92 Aligned_cols=106 Identities=11% Similarity=0.059 Sum_probs=64.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccc----cchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNA----TSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da----~~ll~~~~~~~~~s~D~V~ 199 (311)
.+..||=+|+|. |.+++++|+..--..++++|.++.-++.+++.|.+ .+..+- .+.+.... ....+|.|+
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~i~~~~~~~~~~~v~~~t--~g~g~Dvvi 259 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE---IADLSLDTPLHEQIAALL--GEPEVDCAV 259 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE---EEETTSSSCHHHHHHHHH--SSSCEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc---EEccCCcchHHHHHHHHh--CCCCCCEEE
Confidence 467888899977 88899999986333799999988777888777763 222211 11112111 123689886
Q ss_pred EeCCCCCCC-C---chhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFN-R---PEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k-~---~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.-..+... . -|+. ..+..++...+.|++||++.+.
T Consensus 260 d~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHE---APATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp ECCCTTCBCSSTTGGGSB---CTTHHHHHHHHHEEEEEEEEEC
T ss_pred ECCCCccccccccccccc---chHHHHHHHHHHHhcCCEEEEe
Confidence 543322100 0 0000 0024678889999999998763
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.22 Score=46.38 Aligned_cols=98 Identities=9% Similarity=0.032 Sum_probs=62.5
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccc--cchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNA--TSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da--~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+.+||=+|+|. |..++++|+..-...++++|.++..++.+++.|.+.+ +..+- .++.+.+....++.+|.|+-.
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~~~i~~~t~gg~Dvvid~ 268 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATEC--LNPKDYDKPIYEVICEKTNGGVDYAVEC 268 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEE--ECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEE--EecccccchHHHHHHHHhCCCCCEEEEC
Confidence 467899999875 7888888887632389999987766677777776532 21110 112111111123468888644
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
... +..++...+.|+++ |++.+.
T Consensus 269 ~g~--------------~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 269 AGR--------------IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCC--------------HHHHHHHHHHHhcCCCEEEEE
Confidence 221 25678889999999 998864
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.18 E-value=0.28 Score=45.72 Aligned_cols=97 Identities=9% Similarity=0.065 Sum_probs=62.0
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEccc--cchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATNA--TSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da--~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||=+|+|. |..++++|+.. +. .++++|.++..++.+++.|.+.+ +..+- .++.+......++.+|.|+-
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~~~~~~~g~D~vid 267 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGATEC--VNPQDYKKPIQEVLTEMSNGGVDFSFE 267 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEE--ECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCceE--ecccccchhHHHHHHHHhCCCCcEEEE
Confidence 467899999876 88888889876 45 89999987766666766676432 21110 11111111112346888865
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
.-.. +..++...+.|+++ |++.+.
T Consensus 268 ~~g~--------------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 268 VIGR--------------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp CSCC--------------HHHHHHHHHHBCTTTCEEEEC
T ss_pred CCCC--------------HHHHHHHHHHhhcCCcEEEEe
Confidence 4222 25678888999999 998763
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.31 Score=46.45 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=41.2
Q ss_pred CCCeEEEEeccccHHHHHHH-hhCCC-CeEEEEchHHHHH----HHHHH---cCC-CcEEEEEcccc
Q 021567 125 AQPLVVDIGSGNGLFLLGMA-RKRKD-LNFLGLELVTHCR----DSLQL---SGI-TNGYFIATNAT 181 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA-~~~p~-~~vvGiDi~~~a~----~~a~~---~~~-~Nv~f~~~Da~ 181 (311)
++.+++|||++.|.++..++ +..++ .+|+++|-.+.+. ++++. ++. +|+.++..-+-
T Consensus 226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 57899999999999999998 55654 7999999654433 33333 235 78887765443
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.07 E-value=0.6 Score=43.63 Aligned_cols=98 Identities=17% Similarity=0.093 Sum_probs=63.0
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEcc---ccchhhhhhccCC-CcEeEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN---ATSTFRSIVASYP-GKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~D---a~~ll~~~~~~~~-~s~D~V~ 199 (311)
.+..||-+|+|. |..++++|+..-..+++++|.++..++.+++.|.+.+ +..+ -.++.+.+....+ ..+|.|+
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~v~~~~~g~g~Dvvi 272 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLT--LNRRETSVEERRKAIMDITHGRGADFIL 272 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEE--EETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEE--EeccccCcchHHHHHHHHhCCCCCcEEE
Confidence 467899999764 7788888887632599999988877777777776432 2222 1122111111112 3589886
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.-..+ ..++...+.|+++|++.+.
T Consensus 273 d~~g~~--------------~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 273 EATGDS--------------RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp ECSSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred ECCCCH--------------HHHHHHHHHHhcCCEEEEE
Confidence 543322 4577788999999998764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.25 Score=45.91 Aligned_cols=99 Identities=11% Similarity=0.084 Sum_probs=61.9
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccc-cchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNA-TSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da-~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+..||=+|+|. |..++++|+..--..++++|.++..++.+++.|.+.+ +-..+. .++.+......++.+|.|+-..
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~v~~~~~~g~D~vid~~ 268 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC-INPQDFSKPIQEVLIEMTDGGVDYSFECI 268 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEE-ECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceE-eccccccccHHHHHHHHhCCCCCEEEECC
Confidence 467899999876 7888888887632389999987766666766676432 111110 1111111111234688886542
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
.. ...++...+.|+++ |++.+.
T Consensus 269 g~--------------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 269 GN--------------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp CC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred Cc--------------HHHHHHHHHhhccCCcEEEEE
Confidence 21 25678889999999 998863
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.3 Score=45.48 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=61.8
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEc----cccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~----Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+||=+|+|. |.+++++|+.. +. +++++|.++..++.+++.|.+.+ +-.. |..+.+.... ++.+|.|
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~v~~~~---~~g~Dvv 269 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGATDC-LNPRELDKPVQDVITELT---AGGVDYS 269 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEE-ECGGGCSSCHHHHHHHHH---TSCBSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCcEE-EccccccchHHHHHHHHh---CCCccEE
Confidence 467899999875 78888899876 45 89999987766667776776432 1111 1111112111 2468888
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
+-.-.. ...++...+.|++| |++.+.
T Consensus 270 id~~G~--------------~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 270 LDCAGT--------------AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp EESSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred EECCCC--------------HHHHHHHHHHhhcCCCEEEEE
Confidence 644221 25678889999999 998763
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.66 Score=43.00 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=63.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~f 202 (311)
.+..||=+|+|. |..++++|+.. +.+++++|.++.-++.+++.|.+.+ +..+..++....... ....+|.|+-..
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~v~~~~~g~g~D~vid~~ 265 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALGADHG--INRLEEDWVERVYALTGDRGADHILEIA 265 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHHTTCCEEEEEEET
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcCCCEE--EcCCcccHHHHHHHHhCCCCceEEEECC
Confidence 467899999886 88888888875 5799999988777777777776432 222222221111111 233689886553
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. + ..++...+.|+|||++.+.
T Consensus 266 g-~--------------~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 266 G-G--------------AGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp T-S--------------SCHHHHHHHEEEEEEEEEE
T ss_pred C-h--------------HHHHHHHHHhhcCCEEEEE
Confidence 3 1 2356677899999999875
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.29 Score=45.10 Aligned_cols=95 Identities=17% Similarity=0.095 Sum_probs=61.2
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccch---hhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~l---l~~~~~~~~~s~D~V~ 199 (311)
.+..||-+|+ |.|..+..+++.. +.+++++|.++..++.+++.+.+.+ +-..|..++ +.... ++.+|.++
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~---~~~~D~vi 243 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSIGGEVF-IDFTKEKDIVGAVLKAT---DGGAHGVI 243 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHTTCCEE-EETTTCSCHHHHHHHHH---TSCEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHcCCceE-EecCccHhHHHHHHHHh---CCCCCEEE
Confidence 4678999998 6788888888865 5699999976555556655554321 111111222 12211 23689886
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-+... ...++...+.|+++|++.+.
T Consensus 244 ~~~g~--------------~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 244 NVSVS--------------EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp ECSSC--------------HHHHHHHTTSEEEEEEEEEC
T ss_pred ECCCc--------------HHHHHHHHHHHhcCCEEEEE
Confidence 55321 25678889999999998864
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.43 Score=43.91 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=62.4
Q ss_pred CCCeEEEEecc--ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCC-CcEeEEEEe
Q 021567 125 AQPLVVDIGSG--NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcG--tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~-~s~D~V~i~ 201 (311)
.+..||-+|+| .|..+..+++...+.+++++|.++..++.+++.+.+.+ +-..+ .+.......... +.+|.++-.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~d~vi~~ 247 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV-INASM-QDPLAEIRRITESKGVDAVIDL 247 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEE-EETTT-SCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEE-ecCCC-ccHHHHHHHHhcCCCceEEEEC
Confidence 46789999997 67778888877535789999987776666666664322 21222 122111111112 578988654
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.. +..++...+.|+|+|++.+.
T Consensus 248 ~g~--------------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 248 NNS--------------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp CCC--------------HHHHTTGGGGEEEEEEEEEC
T ss_pred CCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 221 24677888999999998874
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=91.80 E-value=0.57 Score=43.09 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=62.0
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~f 202 (311)
+..||-+|+|. |..+.++|+.. +. +++++|.++..++.+++.|.+.+ +..+-.++.+..... ....+|.++-.-
T Consensus 168 g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~Ga~~~--~~~~~~~~~~~v~~~~~g~g~D~vid~~ 244 (348)
T 2d8a_A 168 GKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGADYV--INPFEEDVVKEVMDITDGNGVDVFLEFS 244 (348)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHTCSEE--ECTTTSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEE--ECCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence 56799999864 78888888876 45 89999988776777766665432 222112221111111 123589886543
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...++...+.|+++|++.+.
T Consensus 245 g~--------------~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 245 GA--------------PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp CC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred CC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 22 25678888999999998864
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.62 Score=43.02 Aligned_cols=99 Identities=16% Similarity=0.026 Sum_probs=61.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEcc---ccchhhhhhcc-CCCcEeEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN---ATSTFRSIVAS-YPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~D---a~~ll~~~~~~-~~~s~D~V~ 199 (311)
.+..||=+|+|. |.+++++|+..--..++++|.++.-++.+++. .+.+.-...| ..++...+... ....+|.++
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvi 257 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVAL 257 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEE
Confidence 356788899876 88889999876333499999887766776665 3333222221 12221111111 234688876
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.... +..++...+.|++||++.+.
T Consensus 258 d~~g~--------------~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 258 ECTGV--------------ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp ECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred ECCCC--------------hHHHHHHHHHhcCCCEEEEE
Confidence 44221 25678889999999999874
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.25 Score=46.15 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=63.0
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEcc--ccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN--ATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~D--a~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+..||=+|+|. |..++++|+..--.+++++|.++.-++.+++.|.+.+ +... -.++.+.+....++.+|.|+-.
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~~~i~~~~~gg~D~vid~ 270 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEF--VNPKDHDKPIQEVIVDLTDGGVDYSFEC 270 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEE--ECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEE--EccccCchhHHHHHHHhcCCCCCEEEEC
Confidence 456788899974 8888889987633389999988777777777776432 2111 1111111111123478888654
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
... +..++...+.|++| |++.+.
T Consensus 271 ~g~--------------~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 271 IGN--------------VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCC--------------HHHHHHHHHHhhccCCEEEEE
Confidence 332 36788889999997 998873
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=91.61 E-value=0.21 Score=41.96 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=59.2
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
.+..||.+|+ |.|..+..+++.. +.+++++|.++...+.+++.+.+.+ +..+-.+........ ....+|.++-+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~--~d~~~~~~~~~~~~~~~~~~~D~vi~~ 114 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYV--GDSRSVDFADEILELTDGYGVDVVLNS 114 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEE--EETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEE--eeCCcHHHHHHHHHHhCCCCCeEEEEC
Confidence 4578999994 6677888877764 5789999987766666655554321 221111111111110 13468988644
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.-+ ..++...+.|+|||++++.
T Consensus 115 -~g~--------------~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 115 -LAG--------------EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp -CCT--------------HHHHHHHHTEEEEEEEEEC
T ss_pred -Cch--------------HHHHHHHHHhccCCEEEEE
Confidence 211 4577888999999998874
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.58 E-value=0.42 Score=44.63 Aligned_cols=93 Identities=14% Similarity=0.196 Sum_probs=61.2
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+..||-+|+|. |..++++|+.. +.+++++|.++..++.+++.|.+.+ +..+-.+.... + ...+|.|+-...
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~-~---~~g~Dvvid~~g 266 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEV--VNSRNADEMAA-H---LKSFDFILNTVA 266 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEE--EETTCHHHHHT-T---TTCEEEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEE--eccccHHHHHH-h---hcCCCEEEECCC
Confidence 467899999985 88888999875 5789999987666666666665432 22221122121 1 246888865433
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+ ..++...+.|+++|++.+.
T Consensus 267 ~~--------------~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 267 AP--------------HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp SC--------------CCHHHHHTTEEEEEEEEEC
T ss_pred CH--------------HHHHHHHHHhccCCEEEEe
Confidence 32 2356778999999998864
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.93 Score=41.25 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=60.7
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+..+|-.|+ |.|..+..+++.. +.+++++|.++..++.+++.+.+. .+-..+..++...+.....+.+|.++-+-
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~~~ 222 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDA-AFNYKTVNSLEEALKKASPDGYDCYFDNV 222 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSE-EEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCcE-EEecCCHHHHHHHHHHHhCCCCeEEEECC
Confidence 4678999998 6788888888765 569999998766666665555432 22111212221111111135789886542
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...++...+.|++||++.+.
T Consensus 223 g---------------~~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 223 G---------------GEFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp C---------------HHHHHHHHTTEEEEEEEEEC
T ss_pred C---------------hHHHHHHHHHHhcCCEEEEE
Confidence 2 13477888999999998864
|
| >4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A | Back alignment and structure |
|---|
Probab=90.63 E-value=0.33 Score=46.11 Aligned_cols=95 Identities=24% Similarity=0.429 Sum_probs=63.5
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchhhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIFGL 83 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~~~ 83 (311)
.+|--|| ++..+..+|.|+|-||.-.-=.+++..|...+++.++.. ....+...|+++++.-. ++.+. ..|
T Consensus 290 m~lDiGp~T~~~~~~~i~~akTIvWNGP~GvFE~~~Fa~GT~~va~aia~~--~a~sivGGGDt~aav~~~g~~d~-~sh 366 (395)
T 4fey_A 290 MILDIGPESQKIIAELLKSANTILWNGPVGVFEFDNFAEGTKALSLAIAQS--HAFSVAGGGDTIAAIEKFGIKDQ-VSY 366 (395)
T ss_dssp EEEEECHHHHHHHHHHHHHCSEEEEECCSSCTTSGGGCHHHHHHHHHHHHH--CSEEEEESHHHHHHHHHTTCSTT-SSE
T ss_pred cceecChHHHHHHHHHHHhCCEEEEECCCCccccchhhHHHHHHHHHHHhc--CCeEEECCcHHHHHHHHcCCcCC-ceE
Confidence 3455566 467899999999999996544567999999999998874 55677777777664432 22221 111
Q ss_pred hhhhhhhhhhhhhhhccCCCchhhh
Q 021567 84 NMVESGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 84 ~~fe~~a~~wd~~~~r~~~~~~~l~ 108 (311)
...+....-+++-|+..|+..++.
T Consensus 367 -iSTGGGA~Le~LeGk~LPgv~aL~ 390 (395)
T 4fey_A 367 -ISTAGGAFLEFLEGKKLPAIEILK 390 (395)
T ss_dssp -EECCSHHHHHHHTTCCCHHHHHHH
T ss_pred -EcCChHHHHHHHcCCCchHHHHHH
Confidence 123356667777787777765544
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=90.62 E-value=0.49 Score=43.64 Aligned_cols=80 Identities=6% Similarity=0.072 Sum_probs=50.3
Q ss_pred cEEEE-EccccchhhhhhccCCCcEeEEEEeCCCCCCCCc-----hhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH-
Q 021567 172 NGYFI-ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP-----EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV- 244 (311)
Q Consensus 172 Nv~f~-~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~-----h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~- 244 (311)
...++ ++|+.+.+.. + ++++||+|++. .|+.... +...--.....+.++.++|+|||.+++.+|....
T Consensus 38 ~~~l~i~gD~l~~L~~-l--~~~svDlI~tD--PPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~ 112 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAK-L--PDDSVQLIICD--PPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQG 112 (319)
T ss_dssp EEEEEEECCHHHHHHT-S--CTTCEEEEEEC--CCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCC
T ss_pred cceEEECCcHHHHHHh-C--ccCCcCEEEEC--CCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCccccc
Confidence 35677 9999987653 3 47899999876 3332210 0000001247788899999999999998876532
Q ss_pred ------HHHHHHHHHhcC
Q 021567 245 ------MLRMKQQFLEYG 256 (311)
Q Consensus 245 ------~~~~~~~l~~~g 256 (311)
...+...+...|
T Consensus 113 ~~~~~~l~~l~~~i~~~G 130 (319)
T 1eg2_A 113 EAGSGDLISIISHMRQNS 130 (319)
T ss_dssp CTTBCCHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHhCcc
Confidence 134455555555
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.45 E-value=0.97 Score=41.38 Aligned_cols=96 Identities=11% Similarity=0.123 Sum_probs=61.5
Q ss_pred CCCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.+||-+|+| .|..+.++|+.. +.+++++|.++.-++.+++.|.+.+ +..+-.++........ +.+|.++-...
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~--~d~~~~~~~~~~~~~~-~~~d~vid~~g 239 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGADLV--VNPLKEDAAKFMKEKV-GGVHAAVVTAV 239 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCSEE--ECTTTSCHHHHHHHHH-SSEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCCCEE--ecCCCccHHHHHHHHh-CCCCEEEECCC
Confidence 46789999986 478888888876 5799999988777777766665422 2111112211111001 46888865422
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...++...+.|+++|++.+.
T Consensus 240 ~--------------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 240 S--------------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp C--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred C--------------HHHHHHHHHHhhcCCEEEEe
Confidence 1 25678888999999998763
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.39 Score=44.65 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=63.3
Q ss_pred CCeEEEEe-c-cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIG-S-GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIG-c-GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..||=+| + |.|..++++|+.....+++++|.++.-++.+++.|.+.+ +..+ .++.........+.+|.|+-...
T Consensus 172 g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~v--i~~~-~~~~~~v~~~~~~g~Dvvid~~g 248 (363)
T 4dvj_A 172 APAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHV--IDHS-KPLAAEVAALGLGAPAFVFSTTH 248 (363)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEE--ECTT-SCHHHHHHTTCSCCEEEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEE--EeCC-CCHHHHHHHhcCCCceEEEECCC
Confidence 56788888 4 458899999987557899999998777777777775432 2111 12212111112457887764321
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+..++...+.|+++|++.+.
T Consensus 249 --------------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 249 --------------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp --------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred --------------chhhHHHHHHHhcCCCEEEEE
Confidence 135788889999999999874
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=90.36 E-value=2.4 Score=39.25 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=74.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHHHHc-------C--------------CCcEEEEEccc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSLQLS-------G--------------ITNGYFIATNA 180 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a~~~-------~--------------~~Nv~f~~~Da 180 (311)
....|+.+|||......++...+++..++-||.-+ .-.+.+.+. + .++.+++.+|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 35789999999999999999877889999999522 111222221 1 26799999999
Q ss_pred cch--hhhhhcc--CCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE-EEe--C---cHHHHHHHHH
Q 021567 181 TST--FRSIVAS--YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF-LQS--D---IEEVMLRMKQ 250 (311)
Q Consensus 181 ~~l--l~~~~~~--~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~-~~t--D---~~~~~~~~~~ 250 (311)
.+. +...+.. ......+++.-..-.++... ....+++.+.+.+ |+|.++ +.. . ...+...|..
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~------~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~ 249 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNN------ESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQS 249 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH------HHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH------HHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHH
Confidence 874 1111111 12333444433333332221 1247888888877 677664 322 1 2245666777
Q ss_pred HHHh-cCC
Q 021567 251 QFLE-YGK 257 (311)
Q Consensus 251 ~l~~-~g~ 257 (311)
.+.+ .|.
T Consensus 250 ~l~~~rg~ 257 (334)
T 1rjd_A 250 NLKESRNL 257 (334)
T ss_dssp HHHHHHCC
T ss_pred HhhcccCC
Confidence 6666 443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=1.2 Score=40.71 Aligned_cols=98 Identities=12% Similarity=0.024 Sum_probs=62.1
Q ss_pred CCCeEEEEecccc-HHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcE-EEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNG-LFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG-~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv-~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+..||=+|+|.+ .++..+|+..-..+++++|.++.-++.+++.|.+.+ ..-..|..+.+.... ...-+|.++..-
T Consensus 163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t--~g~g~d~~~~~~ 240 (348)
T 4eez_A 163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKIT--GGLGVQSAIVCA 240 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHT--TSSCEEEEEECC
T ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhc--CCCCceEEEEec
Confidence 4678888999864 556677776667899999998776777777775432 111222222222211 233466665442
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...+....+.|+++|.+.+.
T Consensus 241 ~~--------------~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 241 VA--------------RIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp SC--------------HHHHHHHHHTEEEEEEEEEC
T ss_pred cC--------------cchhheeheeecCCceEEEE
Confidence 21 36778888999999998763
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=89.72 E-value=1.9 Score=33.80 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=65.3
Q ss_pred CeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..++=+||| .++..+++. ..+..++++|..+...+.+... .+.++.+|+.+. ..+-...-...|.|++..++
T Consensus 7 ~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~---~~~~~~gd~~~~-~~l~~~~~~~~d~vi~~~~~ 80 (141)
T 3llv_A 7 YEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE---GFDAVIADPTDE-SFYRSLDLEGVSAVLITGSD 80 (141)
T ss_dssp CSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT---TCEEEECCTTCH-HHHHHSCCTTCSEEEECCSC
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC---CCcEEECCCCCH-HHHHhCCcccCCEEEEecCC
Confidence 468888885 466666554 2267899999887766666554 357888998764 11111123467888877653
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
.. . ...+....+.+. ...++.......+. +.+.+.|..
T Consensus 81 ~~----------~-n~~~~~~a~~~~-~~~iia~~~~~~~~----~~l~~~G~~ 118 (141)
T 3llv_A 81 DE----------F-NLKILKALRSVS-DVYAIVRVSSPKKK----EEFEEAGAN 118 (141)
T ss_dssp HH----------H-HHHHHHHHHHHC-CCCEEEEESCGGGH----HHHHHTTCS
T ss_pred HH----------H-HHHHHHHHHHhC-CceEEEEEcChhHH----HHHHHcCCC
Confidence 31 1 133444555566 66677666655443 334556653
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.72 E-value=2.1 Score=35.13 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=65.6
Q ss_pred CCeEEEEeccccHHHHHHHhh--CC-CCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARK--RK-DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~--~p-~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
+..|+=+|| |.++..+|+. .. +..|+++|..+...+.+...+ +..+.+|+.+. ..+-.. .-...|.|++.
T Consensus 39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g---~~~~~gd~~~~-~~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEG---RNVISGDATDP-DFWERILDTGHVKLVLLA 112 (183)
T ss_dssp TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTT---CCEEECCTTCH-HHHHTBCSCCCCCEEEEC
T ss_pred CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCC---CCEEEcCCCCH-HHHHhccCCCCCCEEEEe
Confidence 446777776 5555555543 12 468999998776666665544 45677787653 111111 12357888876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
.|++. .+ ..+-...+.+.|++.++..+......+ .+.+.|..
T Consensus 113 ~~~~~----------~~-~~~~~~~~~~~~~~~ii~~~~~~~~~~----~l~~~G~~ 154 (183)
T 3c85_A 113 MPHHQ----------GN-QTALEQLQRRNYKGQIAAIAEYPDQLE----GLLESGVD 154 (183)
T ss_dssp CSSHH----------HH-HHHHHHHHHTTCCSEEEEEESSHHHHH----HHHHHTCS
T ss_pred CCChH----------HH-HHHHHHHHHHCCCCEEEEEECCHHHHH----HHHHcCCC
Confidence 65431 11 223345666788889888887765543 44555654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=89.66 E-value=1.1 Score=40.88 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=62.5
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHH-HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSL-QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a-~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+..||=+|+ |.|..+..+|+.. +.+++++|.++..++.+ ++.|.+. .+..+-.++.........+.+|.++-+
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~d~vi~~ 225 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFDG--AIDYKNEDLAAGLKRECPKGIDVFFDN 225 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCSE--EEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCCE--EEECCCHHHHHHHHHhcCCCceEEEEC
Confidence 4678999998 6788888888875 56999999887766666 5555532 222211222121111123468887543
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-. ...++...+.|++||++.+.
T Consensus 226 ~g---------------~~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 226 VG---------------GEILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp SC---------------HHHHHHHHTTEEEEEEEEEC
T ss_pred CC---------------cchHHHHHHHHhhCCEEEEE
Confidence 11 24678888999999999874
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.40 E-value=1 Score=41.20 Aligned_cols=96 Identities=8% Similarity=-0.013 Sum_probs=61.2
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
.+..||-+|+ |.|..+..+|+.. +.+++++|.++..++.+++.|.+.+ +..+-.++.+.+... ....+|.++-.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~ga~~~--~d~~~~~~~~~~~~~~~~~~~d~vi~~ 242 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKALGADET--VNYTHPDWPKEVRRLTGGKGADKVVDH 242 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSEE--EETTSTTHHHHHHHHTTTTCEEEEEES
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCCEE--EcCCcccHHHHHHHHhCCCCceEEEEC
Confidence 4678999998 6788899998875 5699999987766666666665432 222111211111110 12468988654
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-. + ..++.+.+.|+++|++.+.
T Consensus 243 ~g-~--------------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 243 TG-A--------------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp SC-S--------------SSHHHHHHHEEEEEEEEES
T ss_pred CC-H--------------HHHHHHHHhhccCCEEEEE
Confidence 33 2 2356677889999998764
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.38 E-value=0.65 Score=42.41 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=58.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCe-EEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~-vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
...+++|+-||.|.+.+.+.+..-+.. +.++|+.+.|.+..+.+ .++..++.+|+.++....++ ..+.+|+++..+|
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N-~~~~~~~~~DI~~i~~~~i~-~~~~~Dll~ggpP 92 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR-HQGKIMYVGDVRSVTQKHIQ-EWGPFDLVIGGSP 92 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH-TTTCEEEECCGGGCCHHHHH-HTCCCSEEEECCC
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh-CCCCceeCCChHHccHHHhc-ccCCcCEEEecCC
Confidence 356899999999999999987732222 69999988887765544 23556889999987543232 1246899998887
Q ss_pred CCCCC
Q 021567 204 NPDFN 208 (311)
Q Consensus 204 dP~~k 208 (311)
-.-+.
T Consensus 93 CQ~fS 97 (295)
T 2qrv_A 93 CNDLS 97 (295)
T ss_dssp CGGGB
T ss_pred Ccccc
Confidence 55443
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=89.04 E-value=0.73 Score=42.35 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=59.9
Q ss_pred CCeEEEE-ecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDI-GSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDI-GcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..||=+ |+| .|..+.++|+.. +.+++++|.++..++.+++.|.+.+ +..+ .++...........+|.++-...
T Consensus 151 g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v--i~~~-~~~~~~~~~~~~~g~Dvv~d~~g 226 (346)
T 3fbg_A 151 GKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGADIV--LNHK-ESLLNQFKTQGIELVDYVFCTFN 226 (346)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTCSEE--ECTT-SCHHHHHHHHTCCCEEEEEESSC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEE--EECC-ccHHHHHHHhCCCCccEEEECCC
Confidence 5678888 444 578888888865 5799999987777777777775432 1111 12211111112456888764321
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
.+..++...+.|+++|++..
T Consensus 227 --------------~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 227 --------------TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp --------------HHHHHHHHHHHEEEEEEEEE
T ss_pred --------------chHHHHHHHHHhccCCEEEE
Confidence 13567888899999999965
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=0.85 Score=41.66 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=61.3
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHH-HcCCCcEEEEEc---cccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGITNGYFIAT---NATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~-~~~~~Nv~f~~~---Da~~ll~~~~~~~~~s~D~V 198 (311)
.+..||-+|+ |.|..+..+|+.. +.+++++|.++..++.++ +.|.+.+ +-.. +..+.+... ..+.+|.+
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~---~~~~~d~v 229 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFDDA-FNYKEESDLTAALKRC---FPNGIDIY 229 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCSEE-EETTSCSCSHHHHHHH---CTTCEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCceE-EecCCHHHHHHHHHHH---hCCCCcEE
Confidence 4678999997 6788888888875 579999998776666665 4554322 1111 122222221 13468888
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+-+.. ...++...+.|++||++.+.
T Consensus 230 i~~~g---------------~~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 230 FENVG---------------GKMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp EESSC---------------HHHHHHHHTTEEEEEEEEEC
T ss_pred EECCC---------------HHHHHHHHHHHhcCCEEEEE
Confidence 65421 14678888999999998864
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=0.96 Score=41.72 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=58.7
Q ss_pred CeEEEEeccc-cHHH-HHHH-hhCCCCe-EEEEchHHH---HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 127 PLVVDIGSGN-GLFL-LGMA-RKRKDLN-FLGLELVTH---CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 127 ~~vLDIGcGt-G~~~-~~lA-~~~p~~~-vvGiDi~~~---a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
..||=+|+|. |.++ +++| +.. +.. ++++|.++. -++.+++.|.+.+..-..|..+ +... .+.+|.|+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~----~gg~Dvvi 247 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDV----YEQMDFIY 247 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHH----SCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHh----CCCCCEEE
Confidence 7899999864 7778 8888 665 555 999998765 5666766665433000112222 2211 23688886
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.... +..++...+.|++||++.+.
T Consensus 248 d~~g~--------------~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 248 EATGF--------------PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp ECSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred ECCCC--------------hHHHHHHHHHHhcCCEEEEE
Confidence 44221 24678888999999998864
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=88.04 E-value=0.47 Score=43.95 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=59.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEcccc-chhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNAT-STFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~-~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+..||-+|+|. |..+.++|+.. +.+++++|.++.-++.+++.|.+.+ +..+-. +.... + .+.+|.|+-..
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v--~~~~~~~~~~~~-~---~~~~D~vid~~ 251 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHY--IATLEEGDWGEK-Y---FDTFDLIVVCA 251 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEE--EEGGGTSCHHHH-S---CSCEEEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCCCEE--EcCcCchHHHHH-h---hcCCCEEEECC
Confidence 467899999864 78888888865 5689999987665666666665432 222111 22121 1 14689887654
Q ss_pred CC--CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PN--PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pd--P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. + ..++...+.|++||++.+.
T Consensus 252 g~~~~--------------~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 252 SSLTD--------------IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp SCSTT--------------CCTTTGGGGEEEEEEEEEC
T ss_pred CCCcH--------------HHHHHHHHHhcCCCEEEEe
Confidence 43 2 1234556889999988763
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=2.5 Score=40.31 Aligned_cols=102 Identities=12% Similarity=0.040 Sum_probs=66.1
Q ss_pred CeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..|+=+|| |.++..+++. ..+..|++||..+...+.++..| +.++.+|+.+. ..+-...-...|.|++..++
T Consensus 5 ~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g---~~vi~GDat~~-~~L~~agi~~A~~viv~~~~ 78 (413)
T 3l9w_A 5 MRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFG---MKVFYGDATRM-DLLESAGAAKAEVLINAIDD 78 (413)
T ss_dssp CSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTT---CCCEESCTTCH-HHHHHTTTTTCSEEEECCSS
T ss_pred CeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCC---CeEEEcCCCCH-HHHHhcCCCccCEEEECCCC
Confidence 45777777 5566555543 23678999999887777776554 45789999875 21111123467888887665
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
+. ....+-...+.+.|...++..+.+....
T Consensus 79 ~~-----------~n~~i~~~ar~~~p~~~Iiara~~~~~~ 108 (413)
T 3l9w_A 79 PQ-----------TNLQLTEMVKEHFPHLQIIARARDVDHY 108 (413)
T ss_dssp HH-----------HHHHHHHHHHHHCTTCEEEEEESSHHHH
T ss_pred hH-----------HHHHHHHHHHHhCCCCeEEEEECCHHHH
Confidence 41 1245566778888998888877665443
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.82 E-value=1.5 Score=35.10 Aligned_cols=114 Identities=9% Similarity=0.012 Sum_probs=66.6
Q ss_pred CeEEEEeccccHHHHHHHhhC--CCCeEEEEchH-HHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 127 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLELV-THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~--p~~~vvGiDi~-~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
..++=+|| |.++..+++.. .+..++.+|.. +...+.+......++.++.+|+.+. ..+-...-...|.|++..+
T Consensus 4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~-~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDS-SVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSH-HHHHHHTTTTCSEEEECSS
T ss_pred CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCH-HHHHHcChhhCCEEEEecC
Confidence 34665664 77877776642 35789999975 3333333322123578999998754 1111111245788877655
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
+.. ....+....+.+.|...++...++..+.+ .+.+.|..
T Consensus 81 ~d~-----------~n~~~~~~a~~~~~~~~ii~~~~~~~~~~----~l~~~G~~ 120 (153)
T 1id1_A 81 NDA-----------DNAFVVLSAKDMSSDVKTVLAVSDSKNLN----KIKMVHPD 120 (153)
T ss_dssp CHH-----------HHHHHHHHHHHHTSSSCEEEECSSGGGHH----HHHTTCCS
T ss_pred ChH-----------HHHHHHHHHHHHCCCCEEEEEECCHHHHH----HHHHcCCC
Confidence 431 12455667777888888888777665543 34555554
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=87.60 E-value=0.94 Score=41.59 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=60.9
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
.+..||=+|+ |.|..+.++|+.. +.++++++.++..++.+++.|.+.+ +..+ .++....... ....+|.++-.
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~v--~~~~-~~~~~~v~~~~~~~g~Dvvid~ 234 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVGADIV--LPLE-EGWAKAVREATGGAGVDMVVDP 234 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEE--EESS-TTHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEE--ecCc-hhHHHHHHHHhCCCCceEEEEC
Confidence 4678999997 6688899999876 5799999986655566666665432 2222 2222211111 22368988654
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.. ..++...+.|++||++.+.
T Consensus 235 ~g~---------------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 235 IGG---------------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp CC-----------------CHHHHHHTEEEEEEEEEC
T ss_pred Cch---------------hHHHHHHHhhcCCCEEEEE
Confidence 322 2356778899999999874
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.12 E-value=2.3 Score=36.18 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=61.3
Q ss_pred EEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCC
Q 021567 129 VVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 206 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~ 206 (311)
|+=+| .|.++..+|+. ..+..++.+|..+...+.+.+. .++.++.+|+.+. ..+-...-...|.+++..+++.
T Consensus 3 iiIiG--~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~--~~~~~i~gd~~~~-~~l~~a~i~~ad~vi~~~~~d~ 77 (218)
T 3l4b_C 3 VIIIG--GETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK--LKATIIHGDGSHK-EILRDAEVSKNDVVVILTPRDE 77 (218)
T ss_dssp EEEEC--CHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH--SSSEEEESCTTSH-HHHHHHTCCTTCEEEECCSCHH
T ss_pred EEEEC--CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH--cCCeEEEcCCCCH-HHHHhcCcccCCEEEEecCCcH
Confidence 34445 57788777765 2367899999876655554332 1467899998874 1111111245688877765531
Q ss_pred CCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 207 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 207 ~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
...++..+++.+.|...++..+.+..+.
T Consensus 78 -----------~n~~~~~~a~~~~~~~~iia~~~~~~~~ 105 (218)
T 3l4b_C 78 -----------VNLFIAQLVMKDFGVKRVVSLVNDPGNM 105 (218)
T ss_dssp -----------HHHHHHHHHHHTSCCCEEEECCCSGGGH
T ss_pred -----------HHHHHHHHHHHHcCCCeEEEEEeCcchH
Confidence 1245666677777777777766555443
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.97 E-value=2.8 Score=39.35 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~f 202 (311)
.+..||=+|+|. |..++++|+...-..++++|.++.-++.+++.|.+. ++..+-.++...+... ....+|.|+-.-
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~i~~~t~g~g~D~vid~~ 290 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADH--VIDPTKENFVEAVLDYTNGLGAKLFLEAT 290 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE--EECTTTSCHHHHHHHHTTTCCCSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE--EEcCCCCCHHHHHHHHhCCCCCCEEEECC
Confidence 456788889875 778888888763338999998887777777777543 2222212221111111 123588886443
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcc----cCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLL----VHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvL----kpGG~l~~~ 238 (311)
..+ ...++.+.+.| ++||++.+.
T Consensus 291 g~~-------------~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 291 GVP-------------QLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp SCH-------------HHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred CCc-------------HHHHHHHHHHHHhccCCCcEEEEe
Confidence 222 12344444444 999999874
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.76 E-value=1.5 Score=39.93 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=61.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEE-EEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f-~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+..||=+|+|. |.+++++|+..-...++++|.++.-++.+++.|.+.+-- -..|..+.....- ...-+|.|+-..
T Consensus 160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~--~~~g~d~v~d~~ 237 (346)
T 4a2c_A 160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLR--ELRFNQLILETA 237 (346)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHG--GGCSSEEEEECS
T ss_pred CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhc--ccCCcccccccc
Confidence 467888889875 556777788765567899999887778888777643211 1122222211111 123356654332
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. +..++...+.|++||.+.+.
T Consensus 238 G~--------------~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 238 GV--------------PQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp CS--------------HHHHHHHHHHCCTTCEEEEC
T ss_pred cc--------------cchhhhhhheecCCeEEEEE
Confidence 21 36788888999999999874
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=86.34 E-value=0.57 Score=42.94 Aligned_cols=96 Identities=8% Similarity=0.065 Sum_probs=59.3
Q ss_pred CCCeEEEEecc--ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIGSG--NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcG--tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
.+..||=+|+| .|..+..+|+.. +++++++|.++..++.+++.|.+. .+..+-.++....... ....+|.++-.
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lga~~--~~~~~~~~~~~~~~~~~~~~g~Dvvid~ 220 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLGAAY--VIDTSTAPLYETVMELTNGIGADAAIDS 220 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSE--EEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCCCcE--EEeCCcccHHHHHHHHhCCCCCcEEEEC
Confidence 46789999986 688889998865 579999998765556666666542 2222212221111111 23468988644
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.. ..+.+..+.|++||++.+.
T Consensus 221 ~g~---------------~~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 221 IGG---------------PDGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp SCH---------------HHHHHHHHTEEEEEEEEEC
T ss_pred CCC---------------hhHHHHHHHhcCCCEEEEE
Confidence 221 2234445899999999874
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.22 E-value=1.7 Score=40.07 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=60.5
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc-cCCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~-~~~~s~D~V~i~ 201 (311)
.+..||-+|+ |.|..+..+|+.. +.+++++|.++..++.+++.+.+.+ +..+-.+....+.. .....+|.++-+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~--~d~~~~~~~~~~~~~~~~~~~D~vi~~ 246 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEV--FNHREVNYIDKIKKYVGEKGIDIIIEM 246 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEE--EETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHcCCCEE--EeCCCchHHHHHHHHcCCCCcEEEEEC
Confidence 4678999997 6788888888875 5799999987766666666665422 22211222111110 023368888544
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...++...+.|+++|++.+.
T Consensus 247 ~G---------------~~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 247 LA---------------NVNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp CH---------------HHHHHHHHHHEEEEEEEEEC
T ss_pred CC---------------hHHHHHHHHhccCCCEEEEE
Confidence 11 13467778999999998864
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=86.05 E-value=1.6 Score=39.71 Aligned_cols=123 Identities=10% Similarity=-0.016 Sum_probs=77.5
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~ 207 (311)
++||+=||-|.+.+.+.+.. -..+.++|+.+.|.+..+.+-. -.++.+|+.++....+ ..+|+++..+|-.-+
T Consensus 2 kvidLFsG~GG~~~G~~~aG-~~~v~a~e~d~~a~~ty~~N~~--~~~~~~DI~~i~~~~~----~~~D~l~ggpPCQ~f 74 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNHS--AKLIKGDISKISSDEF----PKCDGIIGGPPSQSW 74 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTT-CEEEEEEECCTTTHHHHHHHCC--SEEEESCGGGCCGGGS----CCCSEEECCCCGGGT
T ss_pred eEEEeCcCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHCC--CCcccCChhhCCHhhC----CcccEEEecCCCCCc
Confidence 58999999999999887762 2246799998877776654432 2578899988743322 358999888775544
Q ss_pred CCch------hhhhhhHHHHHHHHHhcccCCeEEEEE-------eCcHHHHHHHHHHHHhcCCCc
Q 021567 208 NRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 208 k~~h------~krRl~~~~~l~~i~rvLkpGG~l~~~-------tD~~~~~~~~~~~l~~~g~~~ 259 (311)
.... ..|.-+-.++++ +.+.++|.-.+ +. .+....++.+++.|.+.|+..
T Consensus 75 S~ag~~~g~~d~R~~L~~~~~r-~i~~~~Pk~~~-~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v 137 (331)
T 3ubt_Y 75 SEGGSLRGIDDPRGKLFYEYIR-ILKQKKPIFFL-AENVKGMMAQRHNKAVQEFIQEFDNAGYDV 137 (331)
T ss_dssp EETTEECCTTCGGGHHHHHHHH-HHHHHCCSEEE-EEECCGGGGCTTSHHHHHHHHHHHHHTEEE
T ss_pred CCCCCccCCCCchhHHHHHHHH-HHhccCCeEEE-eeeecccccccccchhhhhhhhhccCCcEE
Confidence 3211 111111123333 34456886443 43 244467888889999988743
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=85.71 E-value=4.7 Score=34.45 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=62.8
Q ss_pred CeEEEEeccccHHHHHHHhhCC--CCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRK--DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p--~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..++=+|| |.++..+++... +. ++++|..+...+.+. .++.++.+|+.+. ..+-...-...|.|++..++
T Consensus 10 ~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~----~~~~~i~gd~~~~-~~l~~a~i~~ad~vi~~~~~ 81 (234)
T 2aef_A 10 RHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR----SGANFVHGDPTRV-SDLEKANVRGARAVIVDLES 81 (234)
T ss_dssp CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH----TTCEEEESCTTCH-HHHHHTTCTTCSEEEECCSC
T ss_pred CEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh----cCCeEEEcCCCCH-HHHHhcCcchhcEEEEcCCC
Confidence 45777776 688888887643 34 999998765555554 3578999998764 11111112457888777554
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
.. ....+....+.+.|+..++....+..+.
T Consensus 82 d~-----------~n~~~~~~a~~~~~~~~iia~~~~~~~~ 111 (234)
T 2aef_A 82 DS-----------ETIHCILGIRKIDESVRIIAEAERYENI 111 (234)
T ss_dssp HH-----------HHHHHHHHHHHHCSSSEEEEECSSGGGH
T ss_pred cH-----------HHHHHHHHHHHHCCCCeEEEEECCHhHH
Confidence 31 1244556677788887887776655543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.35 E-value=0.97 Score=41.52 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=35.9
Q ss_pred hcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH
Q 021567 120 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL 167 (311)
Q Consensus 120 ~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~ 167 (311)
.+.+ ++.+|||--||+|..+.+..+. +.+++|+|+.+...+.+++
T Consensus 248 ~~~~-~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~ 292 (323)
T 1boo_A 248 MLTE-PDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAF 292 (323)
T ss_dssp HHCC-TTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHG
T ss_pred HhCC-CCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence 3444 5789999999999999988877 6799999998776665543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=85.24 E-value=5.8 Score=30.29 Aligned_cols=111 Identities=10% Similarity=0.065 Sum_probs=61.1
Q ss_pred CeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..|+=+|+ |.++..+++. ..+..++.+|..+...+.+.+.. ++.++.+|..+. ..+....-...|.|++..|+
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~--~~~~~~~d~~~~-~~l~~~~~~~~d~vi~~~~~ 79 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI--DALVINGDCTKI-KTLEDAGIEDADMYIAVTGK 79 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC--SSEEEESCTTSH-HHHHHTTTTTCSEEEECCSC
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc--CcEEEEcCCCCH-HHHHHcCcccCCEEEEeeCC
Confidence 45777776 5666655543 12578999998665555544321 345677776543 11111112457888877554
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
+. . ...+..+.+.+.++ .+++.+....+. +.+++.|..
T Consensus 80 ~~----------~-~~~~~~~~~~~~~~-~ii~~~~~~~~~----~~l~~~g~~ 117 (140)
T 1lss_A 80 EE----------V-NLMSSLLAKSYGIN-KTIARISEIEYK----DVFERLGVD 117 (140)
T ss_dssp HH----------H-HHHHHHHHHHTTCC-CEEEECSSTTHH----HHHHHTTCS
T ss_pred ch----------H-HHHHHHHHHHcCCC-EEEEEecCHhHH----HHHHHcCCC
Confidence 31 1 13455566667876 555555555443 345566654
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=84.89 E-value=1.7 Score=40.23 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=58.4
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHH---HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVT---HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~---~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+||=+|+|. |..+..+|+.. +.+++++|.+. .-++.+++.|.+.+ ..+ ++.+.... ....+|.++-.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v---~~~--~~~~~~~~-~~~~~d~vid~ 253 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEETKTNYY---NSS--NGYDKLKD-SVGKFDVIIDA 253 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHHTCEEE---ECT--TCSHHHHH-HHCCEEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHhCCcee---chH--HHHHHHHH-hCCCCCEEEEC
Confidence 67899999853 66677777765 56999999875 55566666665433 122 22111111 12468888765
Q ss_pred CCCCCCCCchhhhhhhHHHHH-HHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLV-EAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l-~~i~rvLkpGG~l~~~ 238 (311)
-..+ ..+ +...+.|+++|++++.
T Consensus 254 ~g~~--------------~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 254 TGAD--------------VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp CCCC--------------THHHHHHGGGEEEEEEEEEC
T ss_pred CCCh--------------HHHHHHHHHHHhcCCEEEEE
Confidence 4433 345 8888999999998864
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=83.56 E-value=3.7 Score=37.85 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=62.1
Q ss_pred CCCeEEEEe--ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIG--cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+..||=+| .|.|..+..+|+.. +.+++++|.++..++.+++.|.+.+ +..+-.++.+.........+|.++-..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~--~~~~~~~~~~~~~~~~~~g~D~vid~~ 239 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRP--INYKTEPVGTVLKQEYPEGVDVVYESV 239 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEE--EETTTSCHHHHHHHHCTTCEEEEEECS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcCCcEE--EecCChhHHHHHHHhcCCCCCEEEECC
Confidence 467899999 56788999999876 5799999988766677766665422 222212221111111134688886442
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...++.+.+.|+++|++.+.
T Consensus 240 g---------------~~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 240 G---------------GAMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp C---------------THHHHHHHHHEEEEEEEEEC
T ss_pred C---------------HHHHHHHHHHHhcCCEEEEE
Confidence 2 14577788999999998874
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=83.33 E-value=1.6 Score=39.92 Aligned_cols=95 Identities=11% Similarity=0.015 Sum_probs=57.6
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..||-+|+|. |..++++|+.. +. +++++|.++..++.+++. .+ ..+..+-.++...........+|.++-.-.
T Consensus 165 g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a~--~v~~~~~~~~~~~~~~~~~~g~D~vid~~g 240 (343)
T 2dq4_A 165 GKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-AD--RLVNPLEEDLLEVVRRVTGSGVEVLLEFSG 240 (343)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-CS--EEECTTTSCHHHHHHHHHSSCEEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-HH--hccCcCccCHHHHHHHhcCCCCCEEEECCC
Confidence 56799999864 78888888876 55 899999876655554332 22 122211112211110001335888865432
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. +..++...+.|+++|++.+.
T Consensus 241 ~--------------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 241 N--------------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp C--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred C--------------HHHHHHHHHHHhcCCEEEEE
Confidence 2 25678888999999998864
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=83.23 E-value=2.6 Score=37.63 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=58.7
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccc-cchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNA-TSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da-~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+..||-+|+ |.|..+.++|+.. +.+++++|.++..++.+++.|.+.+ +..+- .++.+. + ..+|.++-
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~--~~~~~~~~~~~~-~----~~~d~vid- 195 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEA--ATYAEVPERAKA-W----GGLDLVLE- 195 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEE--EEGGGHHHHHHH-T----TSEEEEEE-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCCEE--EECCcchhHHHH-h----cCceEEEE-
Confidence 4678999998 6688889998875 5699999986655555655665432 22111 222111 1 45888765
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...+ .++...+.|+++|++...
T Consensus 196 ~g~~---------------~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 196 VRGK---------------EVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp CSCT---------------THHHHHTTEEEEEEEEEC
T ss_pred CCHH---------------HHHHHHHhhccCCEEEEE
Confidence 4322 356778999999998763
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.70 E-value=6.6 Score=36.70 Aligned_cols=108 Identities=16% Similarity=0.313 Sum_probs=71.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEE-c--hHHHHH-HHHHHcCCCc--EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGL-E--LVTHCR-DSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGi-D--i~~~a~-~~a~~~~~~N--v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+..||.|+.+.|.++..++...| +.+ | ++..|. .+++.+++++ +.+...- ......+|.|.
T Consensus 39 ~~~~~~~~d~~gal~~~~~~~~~----~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~ 105 (375)
T 4dcm_A 39 RGPVLILNDAFGALSCALAEHKP----YSIGDSYISELATRENLRLNGIDESSVKFLDST---------ADYPQQPGVVL 105 (375)
T ss_dssp CSCEEEECCSSSHHHHHTGGGCC----EEEESCHHHHHHHHHHHHHTTCCGGGSEEEETT---------SCCCSSCSEEE
T ss_pred CCCEEEECCCCCHHHHhhccCCc----eEEEhHHHHHHHHHHHHHHcCCCccceEecccc---------cccccCCCEEE
Confidence 35799999999999999986533 333 5 344443 4566677753 5654321 11356789998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~ 255 (311)
+..|.+ .. .+ ...|..+...|+||+.+++..++......+.+.+++.
T Consensus 106 ~~lpk~----~~---~l--~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~ 152 (375)
T 4dcm_A 106 IKVPKT----LA---LL--EQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKV 152 (375)
T ss_dssp EECCSC----HH---HH--HHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHH
T ss_pred EEcCCC----HH---HH--HHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhh
Confidence 886522 11 11 4778899999999999988777665555566666554
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.61 E-value=1.4 Score=39.86 Aligned_cols=96 Identities=15% Similarity=0.041 Sum_probs=59.9
Q ss_pred CCCeEEEEe--ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIG--cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
.+..||-+| .|.|..+..+++.. +.+++++|.++..++.+++.+.+. .+..+-.+........ ....+|.++-+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 216 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQ--VINYREEDLVERLKEITGGKKVRVVYDS 216 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSE--EEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCE--EEECCCccHHHHHHHHhCCCCceEEEEC
Confidence 467899999 56788888888765 569999998776666666555432 2221111221111110 13358888654
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-. + ..++...+.|++||++.+.
T Consensus 217 ~g-~--------------~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 217 VG-R--------------DTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp SC-G--------------GGHHHHHHTEEEEEEEEEC
T ss_pred Cc-h--------------HHHHHHHHHhcCCCEEEEE
Confidence 22 1 3467788999999998864
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=82.21 E-value=3.2 Score=37.89 Aligned_cols=70 Identities=9% Similarity=0.028 Sum_probs=45.5
Q ss_pred CeEEEEeccc-cH-HHHHHHhhCCCCeEEEE-chHH-HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 127 PLVVDIGSGN-GL-FLLGMARKRKDLNFLGL-ELVT-HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 127 ~~vLDIGcGt-G~-~~~~lA~~~p~~~vvGi-Di~~-~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
-++-=||||. |. ..+...+..|+..++|| |.+. ++.+.+++.+.++ ...|..+++. +..+|.|++.-
T Consensus 24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~------~~~iDaV~I~t 94 (350)
T 4had_A 24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPH---AFGSYEEMLA------SDVIDAVYIPL 94 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHH------CSSCSEEEECS
T ss_pred cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCe---eeCCHHHHhc------CCCCCEEEEeC
Confidence 3577799986 53 33445556788888875 7654 4555555666543 3567776642 56789999986
Q ss_pred CCC
Q 021567 203 PNP 205 (311)
Q Consensus 203 pdP 205 (311)
|++
T Consensus 95 P~~ 97 (350)
T 4had_A 95 PTS 97 (350)
T ss_dssp CGG
T ss_pred CCc
Confidence 654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=82.12 E-value=1.6 Score=39.63 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=61.2
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
.+..||=+|+ |.|..+.++|+.. +.+++++|.++.-++.+++.|.+. .+..+-.++....... ....+|.++-.
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~--~~~~~~~~~~~~~~~~~~~~g~D~vid~ 224 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGAEY--LINASKEDILRQVLKFTNGKGVDASFDS 224 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSE--EEETTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcE--EEeCCCchHHHHHHHHhCCCCceEEEEC
Confidence 4678999994 6688888888875 679999998776666776666432 2222222221211111 23468988654
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.. ..++...+.|++||++.+.
T Consensus 225 ~g~---------------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 225 VGK---------------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp CGG---------------GGHHHHHHHEEEEEEEEEC
T ss_pred CCh---------------HHHHHHHHHhccCCEEEEE
Confidence 221 3467778899999998874
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=81.81 E-value=7.4 Score=35.29 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=63.3
Q ss_pred CeEEEEeccccHHHHHHHhhC--CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~--p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..++=+|+ |.++..+++.. .+. ++.+|..+...+ +++ .++.++.+|+.+. +.+-...-...|.+++..++
T Consensus 116 ~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~---~~~~~i~gd~~~~-~~L~~a~i~~a~~vi~~~~~ 187 (336)
T 1lnq_A 116 RHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR---SGANFVHGDPTRV-SDLEKANVRGARAVIVDLES 187 (336)
T ss_dssp CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH---TTCEEEESCTTSH-HHHHHTCSTTEEEEEECCSS
T ss_pred CCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh---CCcEEEEeCCCCH-HHHHhcChhhccEEEEcCCc
Confidence 35666665 78888888763 245 999998766555 544 3578999999874 21111123567888877554
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
+. ..-......+.+.|...++....+..+.
T Consensus 188 d~-----------~n~~~~~~ar~~~~~~~iiar~~~~~~~ 217 (336)
T 1lnq_A 188 DS-----------ETIHCILGIRKIDESVRIIAEAERYENI 217 (336)
T ss_dssp HH-----------HHHHHHHHHHTTCTTSEEEEECSSGGGH
T ss_pred cH-----------HHHHHHHHHHHHCCCCeEEEEECCHHHH
Confidence 31 1234455667788887887776555543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=81.67 E-value=2.4 Score=38.83 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=59.2
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc-cCCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~-~~~~s~D~V~i~ 201 (311)
.+..||=+|+ |.|..+..+|+.. +.+++++ .++..++.+++.|.+. +. +..++...... .....+|.++-.
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~lGa~~---i~-~~~~~~~~~~~~~~~~g~D~vid~ 223 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDLGATP---ID-ASREPEDYAAEHTAGQGFDLVYDT 223 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHHTSEE---EE-TTSCHHHHHHHHHTTSCEEEEEES
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHcCCCE---ec-cCCCHHHHHHHHhcCCCceEEEEC
Confidence 4678999994 5688888999875 5689999 7666666777666543 22 22222111110 023468877543
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
.. ...++...+.|+++|.+.+
T Consensus 224 -~g--------------~~~~~~~~~~l~~~G~iv~ 244 (343)
T 3gaz_A 224 -LG--------------GPVLDASFSAVKRFGHVVS 244 (343)
T ss_dssp -SC--------------THHHHHHHHHEEEEEEEEE
T ss_pred -CC--------------cHHHHHHHHHHhcCCeEEE
Confidence 21 1457778889999999886
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=80.82 E-value=5.6 Score=36.37 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=58.3
Q ss_pred CeEEEEec--cccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHH-cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 127 PLVVDIGS--GNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQL-SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 127 ~~vLDIGc--GtG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~-~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
..||=.|+ |.|..+..+++.. +. +++++|.++..++.+++ .|.+. .+..+-.+..........+.+|.++-+-
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g~~~--~~d~~~~~~~~~~~~~~~~~~d~vi~~~ 238 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELGFDA--AINYKKDNVAEQLRESCPAGVDVYFDNV 238 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCCSE--EEETTTSCHHHHHHHHCTTCEEEEEESC
T ss_pred cEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCce--EEecCchHHHHHHHHhcCCCCCEEEECC
Confidence 78999997 6777888888765 56 99999987666666654 45432 2221111221111111123688876442
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...++...+.|++||++.+.
T Consensus 239 G---------------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 239 G---------------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp C---------------HHHHHHHHHTEEEEEEEEEC
T ss_pred C---------------HHHHHHHHHHhccCcEEEEE
Confidence 1 25677888999999998864
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=80.42 E-value=1.5 Score=39.85 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=61.1
Q ss_pred CCCeEEEEe--ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIG--cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
.+..||=+| .|.|..+..+|+.. +.+++++|.++..++.+++.|.+. .+..+-.++....... ....+|.++-.
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~--~~~~~~~~~~~~~~~~~~~~g~Dvvid~ 216 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKALGAWE--TIDYSHEDVAKRVLELTDGKKCPVVYDG 216 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSE--EEETTTSCHHHHHHHHTTTCCEEEEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCE--EEeCCCccHHHHHHHHhCCCCceEEEEC
Confidence 467899888 35688888888875 569999998777677777666432 2222222221111111 23468887644
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
... ..++...+.|++||++.+.
T Consensus 217 ~g~---------------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 217 VGQ---------------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp SCG---------------GGHHHHHTTEEEEEEEEEC
T ss_pred CCh---------------HHHHHHHHHhcCCCEEEEE
Confidence 221 3466778999999999875
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=80.28 E-value=4.7 Score=36.95 Aligned_cols=96 Identities=16% Similarity=-0.008 Sum_probs=59.5
Q ss_pred CCCeEEEEe--ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIG--cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
.+..||-+| .|.|..+..+++.. +.+++++|.++..++.+++.+.+. .+..+-.+....+... ....+|.++-+
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 238 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKLGAAA--GFNYKKEDFSEATLKFTKGAGVNLILDC 238 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSE--EEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcE--EEecCChHHHHHHHHHhcCCCceEEEEC
Confidence 467899998 46788888888875 579999998776666666556432 2222212221111111 22468888654
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.. ..++...+.|++||++.+.
T Consensus 239 ~G~---------------~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 239 IGG---------------SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp SCG---------------GGHHHHHHHEEEEEEEEEC
T ss_pred CCc---------------hHHHHHHHhccCCCEEEEE
Confidence 221 2356677899999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 311 | ||||
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 3e-16 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 1e-13 | |
| d16pka_ | 415 | c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma | 3e-11 | |
| d1vpea_ | 398 | c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga | 2e-10 | |
| d1ltka_ | 417 | c.86.1.1 (A:) Phosphoglycerate kinase {Malaria par | 4e-10 | |
| d1v6sa_ | 390 | c.86.1.1 (A:) Phosphoglycerate kinase {Thermus the | 1e-09 | |
| d1phpa_ | 394 | c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus st | 1e-08 | |
| d1hdia_ | 413 | c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus sc | 2e-08 | |
| d1qpga_ | 415 | c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yea | 3e-08 |
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 73.8 bits (180), Expect = 3e-16
Identities = 34/205 (16%), Positives = 83/205 (40%), Gaps = 17/205 (8%)
Query: 106 ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHC 161
A+ + W+ + + P+ +++G+G G F+ GMA++ D+N++G+E ++
Sbjct: 11 AISNPADYKGKWNTVFGND-NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTA 69
Query: 162 RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL 221
++ S N + +A + PG++ V + +P + + R+
Sbjct: 70 VQKVKDSEAQNVKLLNIDADTLTDVF---EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHF 126
Query: 222 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 281
++ +++ G + ++D + + F EYG T +
Sbjct: 127 LKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL---------LLTYVSLDLHNSNLE 177
Query: 282 FGVRSDWEQHVIDRGAPMYRLMLSK 306
+ +++E+ G P+YR +
Sbjct: 178 GNIMTEYEEKFSALGQPIYRAEVEW 202
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 66.4 bits (161), Expect = 1e-13
Identities = 31/197 (15%), Positives = 78/197 (39%), Gaps = 11/197 (5%)
Query: 107 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 166
+ W + + P+ V++GSG G F+ GMA++ D+N++G+++
Sbjct: 14 VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 72
Query: 167 LSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 225
+ G + + G++ + + +P + + R+ ++ ++
Sbjct: 73 DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTF 132
Query: 226 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR 285
+L +G++ ++D + F +YG + D + V
Sbjct: 133 KRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDL---------HASDFEGNVM 183
Query: 286 SDWEQHVIDRGAPMYRL 302
+++EQ ++G +YR+
Sbjct: 184 TEYEQKFSNKGQVIYRV 200
|
| >d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} Length = 415 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Trypanosoma brucei [TaxId: 5691]
Score = 61.4 bits (148), Expect = 3e-11
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 9 LSILGQGPWKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSM 68
+ + + + + ++ IW GP+ YS G + + + + +++IG
Sbjct: 313 IGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGG 372
Query: 69 ACKAIAKVSSSIFGLNMVES-GSAVWEFLKGRMLPGVSALD 108
+ A++S ++ V + G A E L+G+ LPGV+ LD
Sbjct: 373 DSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLD 413
|
| >d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} Length = 398 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermotoga maritima [TaxId: 2336]
Score = 58.6 bits (141), Expect = 2e-10
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 11 ILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVI 65
L GP +K+ L + V+W GP+ ++ G ++ + +++ +TV+
Sbjct: 292 GLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGA-ITVV 350
Query: 66 GSMACKAIAKVSSSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 107
G A + V + G A EFL+G+ LPG++++
Sbjct: 351 GGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASM 393
|
| >d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 417 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 58.2 bits (140), Expect = 4e-10
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 15/108 (13%)
Query: 11 ILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVI 65
L GP +K ++L + VIW GP ++ G+ + ++ +V++ V
Sbjct: 314 GLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVG 373
Query: 66 GSMACKAIAKVSSSIFGLN-----MVESGSAVWEFLKGRMLPGVSALD 108
G + + + G A E L+G+ LPGV AL
Sbjct: 374 GGDTASLVEQ-----QNKKNEISHVSTGGGASLELLEGKELPGVLALS 416
|
| >d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermus thermophilus [TaxId: 274]
Score = 56.3 bits (135), Expect = 1e-09
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 1 MVFQMVGNLSILGQGPWKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTC 60
V M ++ + + R L + V W GP+ + G + ++
Sbjct: 284 PVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLA---VGQAIAALEG 340
Query: 61 NVTVIGSMACKAIAKVSSSIFGLNMVES-GSAVWEFLKGRMLPGVSALD 108
TV+G A V + G A EFL+ LPG+ L+
Sbjct: 341 AFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389
|
| >d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 53.5 bits (128), Expect = 1e-08
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
++ ++ + + V+W GP+ +++G + +++ +VIG A +
Sbjct: 303 YRDVIRESKLVVWNGPMGVFEMDAFAHGTKA---IAEALAEALDTYSVIGGGDSAAAVEK 359
Query: 77 SSSIFGLNMVES-GSAVWEFLKGRMLPGVSALD 108
++ + + G A EF++G+ LPGV AL+
Sbjct: 360 FGLADKMDHISTGGGASLEFMEGKQLPGVVALE 392
|
| >d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 52.8 bits (126), Expect = 2e-08
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 5 MVGNLSILGQGPWKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTV 64
M + + + + + ++W GPV ++ G L + K + C +T+
Sbjct: 308 MGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGC-ITI 366
Query: 65 IG---SMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD 108
IG + C A ++ ++ G A E L+G++LPGV AL
Sbjct: 367 IGGGDTATCCAKWNTEDNVSHVST--GGGASLELLEGKVLPGVDALS 411
|
| >d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 415 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.4 bits (125), Expect = 3e-08
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 8 NLSILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNV 62
L GP + + + + ++W GP +++ G L + K S N
Sbjct: 307 GWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNT 365
Query: 63 TVIGSMACKAIAKVSSSIFGLNMV-ESGSAVWEFLKGRMLPGVSALD 108
+IG +AK ++ V G A E L+G+ LPGV+ L
Sbjct: 366 VIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLS 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 100.0 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.66 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.65 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.64 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.62 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.62 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.61 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.61 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.58 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.57 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.54 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.53 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.53 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.52 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.52 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.51 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.5 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.5 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.48 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.47 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.47 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.46 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.45 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.43 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.43 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.43 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.43 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.42 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.41 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.41 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.4 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.39 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.35 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.35 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.35 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.33 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.3 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.3 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.27 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.26 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.22 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.2 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.17 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.14 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.14 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.11 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.08 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.06 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.03 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.02 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.01 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.01 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.0 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.0 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.99 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.98 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.96 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.94 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.88 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.86 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.86 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.86 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.85 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.85 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.81 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.77 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.76 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.73 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.72 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.7 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.69 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.6 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.56 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.56 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.54 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.53 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.52 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.39 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.36 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.35 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.34 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.34 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.23 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.19 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.17 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.15 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.14 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.13 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.1 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.1 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.88 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.78 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.76 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.75 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.48 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.3 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.06 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.7 | |
| d1ltka_ | 417 | Phosphoglycerate kinase {Malaria parasite (Plasmod | 96.68 | |
| d1hdia_ | 413 | Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: | 96.58 | |
| d1vpea_ | 398 | Phosphoglycerate kinase {Thermotoga maritima [TaxI | 96.52 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.39 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.25 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.99 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.98 | |
| d16pka_ | 415 | Phosphoglycerate kinase {Trypanosoma brucei [TaxId | 95.85 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.81 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.8 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.68 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.67 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.09 | |
| d1qpga_ | 415 | Phosphoglycerate kinase {Baker's yeast (Saccharomy | 95.07 | |
| d1phpa_ | 394 | Phosphoglycerate kinase {Bacillus stearothermophil | 95.06 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.44 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.06 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.05 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.84 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.39 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.38 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.17 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 92.41 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.26 | |
| d1v6sa_ | 390 | Phosphoglycerate kinase {Thermus thermophilus [Tax | 91.9 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 91.76 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 91.29 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.2 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.11 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.2 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 90.14 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.13 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.44 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 88.95 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.52 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 88.46 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 87.68 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 87.33 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 87.15 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 86.47 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.43 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 86.25 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 83.64 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 83.41 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 83.4 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 82.15 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 82.07 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.21 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.81 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.76 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 80.38 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.28 |
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=1.7e-38 Score=279.69 Aligned_cols=179 Identities=18% Similarity=0.391 Sum_probs=158.1
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhc
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
..+|.+.|++ .+++|||||||+|.++..+|+.+|+.+++|+|++ ..|.+++.+.+++|+.++++|+..+. ..+
T Consensus 21 ~~~w~~~f~~-~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~-~~~- 97 (204)
T d1yzha1 21 KAKWRDLFGN-DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT-DYF- 97 (204)
T ss_dssp TTTHHHHHTS-CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG-GTS-
T ss_pred hccHHHHcCC-CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh-hhc-
Confidence 4689999988 6899999999999999999999999999999974 55677777889999999999999974 345
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeecccccc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT 269 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~ 269 (311)
++.++|.|+++|||||+|++|+|||++++.||+.++++|||||.|+++||+.+|+++|++.+.+.++.......+.+
T Consensus 98 -~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~~~~~~~-- 174 (204)
T d1yzha1 98 -EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLH-- 174 (204)
T ss_dssp -CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG--
T ss_pred -cCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccccccccc--
Confidence 58899999999999999999999999999999999999999999999999999999999999998876544444433
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEE
Q 021567 270 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLS 305 (311)
Q Consensus 270 ~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~ 305 (311)
..+.+..+.|+||+++.++|++||++.++
T Consensus 175 -------~~~~~~~~~T~yE~k~~~~G~~Iy~l~~~ 203 (204)
T d1yzha1 175 -------ASDFEGNVMTEYEQKFSNKGQVIYRVEAE 203 (204)
T ss_dssp -------GSCCCCCCCCHHHHHTGGGCCCCEEEEEE
T ss_pred -------ccccCCCCCCHHHHHHHHcCCCeEEEEEE
Confidence 12344567899999999999999999987
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.7e-38 Score=279.68 Aligned_cols=181 Identities=19% Similarity=0.395 Sum_probs=160.7
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhc
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
..+|.+.|++ ++|+|||||||+|.++..+|+++|+.+++|||++ ..+.+++++.+++|+.++++|+..+++ .+
T Consensus 19 ~~~w~~~F~~-~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~-~~- 95 (204)
T d2fcaa1 19 KGKWNTVFGN-DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD-VF- 95 (204)
T ss_dssp TTCHHHHHTS-CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH-HC-
T ss_pred HhHHHHHcCC-CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhc-cc-
Confidence 5689999998 6899999999999999999999999999999975 456666777899999999999998753 45
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeecccccc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT 269 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~ 269 (311)
+++++|.|+++||+||+|++|+++|++++.||++++|+|||||.|++.||+..|+++|++.+.+++.+......|.|.
T Consensus 96 -~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~~~~~~d~~~- 173 (204)
T d2fcaa1 96 -EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDLHN- 173 (204)
T ss_dssp -CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGGG-
T ss_pred -CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCccccCChhhcc-
Confidence 589999999999999999999999999999999999999999999999999999999999999998876666655442
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeC
Q 021567 270 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP 307 (311)
Q Consensus 270 ~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~ 307 (311)
...+..+.|+||+++.++|++|||+.+++.
T Consensus 174 --------~~~~~~~~T~yE~k~~~~G~~iy~~~~~~~ 203 (204)
T d2fcaa1 174 --------SNLEGNIMTEYEEKFSALGQPIYRAEVEWR 203 (204)
T ss_dssp --------SSCTTCCCCTTGGGSSSSSCCCEEEEEECC
T ss_pred --------cCCCCCCCCHHHHHHHHcCCCeEEEEEEEe
Confidence 233446789999999999999999999874
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.66 E-value=2.7e-16 Score=137.40 Aligned_cols=134 Identities=14% Similarity=0.139 Sum_probs=97.6
Q ss_pred hhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHH
Q 021567 88 SGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSL 165 (311)
Q Consensus 88 ~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a 165 (311)
..+.+||.|..|..|+++.+.+. ...+...+.. ++.+|||||||||..+..+++. .|+.+++|+|+|+.+++.|
T Consensus 6 ~~a~~fdd~i~~~iP~Y~~~~~~---i~~~~~~~~~-~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A 81 (225)
T d1im8a_ 6 NVAEVFPDMIQRSVPGYSNIITA---IGMLAERFVT-ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERC 81 (225)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHH---HHHHHHHHCC-TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHHHHHHH---HHHHHHHhcC-CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHH
Confidence 46788888878888887544332 2344555554 4689999999999999999986 5789999999888777776
Q ss_pred HH----cC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 166 QL----SG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 166 ~~----~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++ .+ ..++++..+|+.++ +...+|.+++.+.-.+.... -...+|++++++|||||.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~d~i~~~~~l~~~~~~------d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 82 RQHIAAYHSEIPVEILCNDIRHV-------EIKNASMVILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp HHHHHTSCCSSCEEEECSCTTTC-------CCCSEEEEEEESCGGGSCGG------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhHhhcccchhhhccchhhcc-------ccccceeeEEeeeccccChh------hHHHHHHHHHHhCCCCceeecc
Confidence 53 23 34688888887665 35677888877553332111 1148999999999999999986
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.65 E-value=7.2e-16 Score=138.12 Aligned_cols=156 Identities=12% Similarity=-0.006 Sum_probs=115.3
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH----Hc-CCCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ----LS-GITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~----~~-~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||+|||+|.++..||+. .|+.+++++|.++.+++.|+ +. +..|+.+.++|+.+. + ++.+||.|
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~----~--~~~~fD~V 158 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF----I--SDQMYDAV 158 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC----C--CSCCEEEE
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc----c--ccceeeee
Confidence 4789999999999999999987 68889999998765555544 32 467999999998775 2 47889999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCC
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG 278 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~ 278 (311)
+++.|+|| .+++++.++|||||++.+.+-+-.....+.+.++++|+....+.+-. + ..|..
T Consensus 159 ~ld~p~p~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~~E~~-----~-R~~~~ 219 (250)
T d1yb2a1 159 IADIPDPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELM-----K-RRILV 219 (250)
T ss_dssp EECCSCGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEE-----E-CCCCC
T ss_pred eecCCchH-------------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEEEEEE-----e-EEEEE
Confidence 99999998 78999999999999999987776677788888888887544332211 1 22322
Q ss_pred CCCCCCCCHHHHHHHHcCCCeEEEEEEeCCCC
Q 021567 279 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV 310 (311)
Q Consensus 279 ~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~~~ 310 (311)
.. ...+-. ....|++=|-+.+||+.|+
T Consensus 220 ~~-~~~RP~----~~mvgHTgfl~~arK~~g~ 246 (250)
T d1yb2a1 220 RE-GATRPA----SDDLTHTAFITFAIKKSGM 246 (250)
T ss_dssp CT-TCCCCG----GGGSCEEEEEEEEEECCSC
T ss_pred cC-CccCCC----CCCccchhhhhhhcccCCC
Confidence 11 111111 1234666688888988775
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.64 E-value=7.3e-16 Score=135.29 Aligned_cols=99 Identities=23% Similarity=0.322 Sum_probs=81.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..++++. .+++|||+|+.+ .+++...+.+|+.++++|++++ |+++++||.|++
T Consensus 16 ~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~ 88 (234)
T d1xxla_ 16 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-----PFPDDSFDIITC 88 (234)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-----CSCTTCEEEEEE
T ss_pred CCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccc-----cccccccceeee
Confidence 46899999999999999999985 589999987554 4455566788999999999987 557899999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+.-.|+.+. ..++++++++|||||.+++.
T Consensus 89 ~~~l~~~~d~--------~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 89 RYAAHHFSDV--------RKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEE
T ss_pred eceeecccCH--------HHHHHHHHHeeCCCcEEEEE
Confidence 7654333221 48999999999999999885
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=1.6e-15 Score=136.79 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=97.8
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH----Hc---CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ----LS---GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~----~~---~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
++.+|||+|||+|.++..||+. .|+.+++++|+++..++.|+ .. ..+|+.++++|+.+. ++++++||
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-----~~~~~~fD 170 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-----ELPDGSVD 170 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-----CCCTTCEE
T ss_pred CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc-----cccCCCcc
Confidence 5789999999999999999998 78999999998655444443 22 357999999999875 44689999
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh-cCCCc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE-YGKGK 259 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~-~g~~~ 259 (311)
.|++..|+|| ..+++++++|||||.+.+.+.+-+....+.+.+.+ .+|..
T Consensus 171 aV~ldlp~P~-------------~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~ 221 (264)
T d1i9ga_ 171 RAVLDMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTE 221 (264)
T ss_dssp EEEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCC
T ss_pred eEEEecCCHH-------------HHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeec
Confidence 9999999998 78999999999999999988888888888888864 45543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.62 E-value=1.1e-15 Score=132.92 Aligned_cols=100 Identities=16% Similarity=0.261 Sum_probs=79.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..++++. .+++|+|+++.+++. ++..+.+|+.|+++|++++ |+++++||.|++
T Consensus 15 ~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l-----~~~~~~fD~v~~ 87 (231)
T d1vl5a_ 15 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-----PFTDERFHIVTC 87 (231)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-----CSCTTCEEEEEE
T ss_pred CcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccc-----cccccccccccc
Confidence 46899999999999999999885 589999987655544 4456788999999999987 557899999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...--|..+. ..++++++++|||||++++.+
T Consensus 88 ~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 88 RIAAHHFPNP--------ASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccCCH--------HHHHHHHHHhcCCCcEEEEEe
Confidence 7432222111 489999999999999999853
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=5.9e-16 Score=139.54 Aligned_cols=104 Identities=14% Similarity=0.200 Sum_probs=87.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++..|||||||+|.++..+++..|+..++|+|+++.+++.+++. .+|+.|+++|+.++ |+++++||.|+..+.
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-~~~~~~~~~d~~~l-----~~~~~sfD~v~~~~~- 156 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-YPQVTFCVASSHRL-----PFSDTSMDAIIRIYA- 156 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-CTTSEEEECCTTSC-----SBCTTCEEEEEEESC-
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-cccccceeeehhhc-----cCCCCCEEEEeecCC-
Confidence 56899999999999999999999999999999999999888655 46899999999987 557999999988754
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHH
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK 249 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~ 249 (311)
|. .+++++|+|||||.+++.+-+.....++.
T Consensus 157 ~~--------------~~~e~~rvLkpgG~l~~~~p~~~~l~el~ 187 (268)
T d1p91a_ 157 PC--------------KAEELARVVKPGGWVITATPGPRHLMELK 187 (268)
T ss_dssp CC--------------CHHHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred HH--------------HHHHHHHHhCCCcEEEEEeeCCcchHHHH
Confidence 21 25789999999999999886554444433
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=1.9e-15 Score=133.06 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=96.1
Q ss_pred hhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR 162 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~ 162 (311)
++.++..+.+||.+..+..+........ .......+...+..+|||||||||.++..|+++ +.+++|||+++.++
T Consensus 2 ~~~~~~~a~~Yd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi 76 (251)
T d1wzna1 2 YELYTLLAEYYDTIYRRRIERVKAEIDF---VEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEML 76 (251)
T ss_dssp CGGGTTTGGGHHHHTHHHHHTHHHHHHH---HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHH
T ss_pred cchhHhhHHHHHHHHHhhhhhHHHHHHH---HHHHHHHhcCCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccc
Confidence 4667778999999877654443111100 001122223334678999999999999999987 46899999887766
Q ss_pred HHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC-CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 163 DSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 163 ~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd-P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+.|++ .+. ++.+.++|++++ + .++.||.|++.+.. .+... .-...+|++++++|||||.+++
T Consensus 77 ~~a~~~~~~~~~-~i~~~~~d~~~l-----~-~~~~fD~I~~~~~~~~~~~~------~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 77 RVARRKAKERNL-KIEFLQGDVLEI-----A-FKNEFDAVTMFFSTIMYFDE------EDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp HHHHHHHHHTTC-CCEEEESCGGGC-----C-CCSCEEEEEECSSGGGGSCH------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccc-cchheehhhhhc-----c-cccccchHhhhhhhhhcCCh------HHHHHHHHHHHHHcCCCcEEEE
Confidence 65543 343 799999999887 3 24689999876421 11100 0114899999999999999998
Q ss_pred EeCc
Q 021567 238 QSDI 241 (311)
Q Consensus 238 ~tD~ 241 (311)
...+
T Consensus 144 ~~~~ 147 (251)
T d1wzna1 144 DFPC 147 (251)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 6644
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=3.1e-15 Score=128.91 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=79.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+..+|||||||+|.++..+|+. +.+++|+|+|+.+++.+++ .+ .++.++++|+.++ +.++++||.|++
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l-----~~~~~~fD~I~~ 108 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKL-----SFEDKTFDYVIF 108 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSC-----CSCTTCEEEEEE
T ss_pred CCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhcccc-ccccccccccccc-----cccCcCceEEEE
Confidence 4678999999999999999986 5799999998777666543 33 4678999999987 557899999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
...-.|..... ...+|++++++|||||.+++.+-
T Consensus 109 ~~~l~~~~~~d------~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 109 IDSIVHFEPLE------LNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp ESCGGGCCHHH------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecchhhCChhH------HHHHHHHHHHHcCcCcEEEEEEc
Confidence 86533321111 14789999999999999988653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=5.9e-15 Score=128.75 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=79.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC--
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC-- 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f-- 202 (311)
.+.+|||||||+|.++..+++. +.+++|+|+++.+++.+++++..+ ++.+|++++ ++++++||.|+..+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~--~~~~~~~~l-----~~~~~~fD~ii~~~~~ 112 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKN--VVEAKAEDL-----PFPSGAFEAVLALGDV 112 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSC--EEECCTTSC-----CSCTTCEEEEEECSSH
T ss_pred CCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccc--ccccccccc-----ccccccccceeeecch
Confidence 4578999999999999999987 579999999999999998876654 568898887 55689999987643
Q ss_pred ----CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 203 ----PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 203 ----pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
||| .++|+++.++|||||.+++.+.+
T Consensus 113 ~~~~~d~-------------~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 113 LSYVENK-------------DKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp HHHCSCH-------------HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hhhhhhH-------------HHHHHHHHhhcCcCcEEEEEECC
Confidence 233 47899999999999999998754
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.54 E-value=1.2e-14 Score=131.10 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=79.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..||+++ +.+|+|||+++.++ +++...++ +|+.|+++|+.++ |+++++||.|+
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-----~~~~~sfD~V~ 140 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-----PCEDNSYDFIW 140 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-----SSCTTCEEEEE
T ss_pred CCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccc-----cccccccchhh
Confidence 57899999999999999999875 57999999876544 44445676 4799999999987 55789999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
....-.+..+ ...++++++++|||||.|++.
T Consensus 141 ~~~~l~h~~d--------~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 141 SQDAFLHSPD--------KLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp EESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccchhhhccC--------HHHHHHHHHHhcCCCcEEEEE
Confidence 7643221111 148999999999999999985
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.2e-14 Score=126.67 Aligned_cols=126 Identities=10% Similarity=0.082 Sum_probs=91.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||||||+|.++..++++.+ .+|+|||+++.+++.|++ .+..|++|+++|++++ +.++++||.|++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~-----~~~~~~fD~I~~ 133 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-----TPEPDSYDVIWI 133 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-----CCCSSCEEEEEE
T ss_pred CCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccccccccccccccccc-----cccccccccccc
Confidence 457899999999999999987764 589999998887777654 3456899999999987 446899999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH--------------HHHHHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------------EVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~--------------~~~~~~~~~l~~~g~~~~~~ 262 (311)
.+.-.+..+. ...+++++++++|+|||.+++..... ...+.+.+.+.+.|+..+..
T Consensus 134 ~~~l~h~~~~------~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~ 203 (222)
T d2ex4a1 134 QWVIGHLTDQ------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 203 (222)
T ss_dssp ESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred ccccccchhh------hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEE
Confidence 7543221111 11479999999999999999852110 01345566667777665433
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=3.4e-14 Score=125.39 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..++++.+ ..++|||+++.+++ ++...++. +++|+++|+.++ + ++++||.|+
T Consensus 33 pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~----~--~~~~fD~v~ 105 (245)
T d1nkva_ 33 PGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY----V--ANEKCDVAA 105 (245)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC----C--CSSCEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc----c--ccCceeEEE
Confidence 578999999999999999998764 79999998765544 44456764 599999999886 2 478999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+...--+..+. ..++++++++|||||++++.
T Consensus 106 ~~~~~~~~~d~--------~~~l~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 106 CVGATWIAGGF--------AGAEELLAQSLKPGGIMLIG 136 (245)
T ss_dssp EESCGGGTSSS--------HHHHHHHTTSEEEEEEEEEE
T ss_pred EEehhhccCCH--------HHHHHHHHHHcCcCcEEEEE
Confidence 76432222111 48999999999999999985
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.52 E-value=9.8e-14 Score=117.99 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=90.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.+++.+|+.. .+++|+|+++. |.+++++.++ +|++++++|+.+.. .....+|.|+
T Consensus 33 ~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~-----~~~~~~D~v~ 105 (186)
T d1l3ia_ 33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL-----CKIPDIDIAV 105 (186)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-----TTSCCEEEEE
T ss_pred CCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc-----cccCCcCEEE
Confidence 57899999999999999999874 58999997654 5555556777 59999999998873 2467899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
+..+.. + .+++++.+.+.|||||++++..-..+-.....+.+...++.
T Consensus 106 ~~~~~~-----~------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 106 VGGSGG-----E------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFD 153 (186)
T ss_dssp ESCCTT-----C------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCC
T ss_pred EeCccc-----c------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCC
Confidence 874321 1 14789999999999999998765555555677778887764
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=4.3e-14 Score=127.47 Aligned_cols=119 Identities=12% Similarity=0.145 Sum_probs=98.4
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHH----HHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTH----CRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~----a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||+|||+|.++..||+. .|+.+++|+|+++. |.+++++.++ +|+.+...|+... + ....+|.|
T Consensus 103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~----~--~~~~~D~V 176 (266)
T d1o54a_ 103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG----F--DEKDVDAL 176 (266)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC----C--SCCSEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc----c--cccceeee
Confidence 5789999999999999999987 57899999998654 5555555665 6799999886543 2 46789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
++..|+|| .+++++.++|||||.+.+.+-..+..+.+.+.+++.||....+
T Consensus 177 ~~d~p~p~-------------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~ 227 (266)
T d1o54a_ 177 FLDVPDPW-------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEV 227 (266)
T ss_dssp EECCSCGG-------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEE
T ss_pred EecCCCHH-------------HHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEE
Confidence 99999998 7899999999999999988877777888899999998754433
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=7.3e-14 Score=129.31 Aligned_cols=116 Identities=15% Similarity=0.106 Sum_probs=90.4
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH----Hc-----------CCCcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ----LS-----------GITNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~----~~-----------~~~Nv~f~~~Da~~ll~~~~ 188 (311)
++.+|||+|||+|.++..||+. .|+.+++++|+++...+.|+ +. ..+|+.+.++|+.+...
T Consensus 98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~--- 174 (324)
T d2b25a1 98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE--- 174 (324)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc---
Confidence 4789999999999999999987 78899999998655444443 21 23689999999887632
Q ss_pred ccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 189 ~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
...+.+||.|++..|+|| ..+.+++++|||||+|.+.+-+-......++.++..+
T Consensus 175 ~~~~~~fD~V~LD~p~P~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~ 229 (324)
T d2b25a1 175 DIKSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCE 229 (324)
T ss_dssp ------EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHT
T ss_pred ccCCCCcceEeecCcCHH-------------HHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 224678999999999998 6799999999999999988777667777888887654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=1e-14 Score=125.13 Aligned_cols=127 Identities=11% Similarity=0.052 Sum_probs=89.7
Q ss_pred hhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH
Q 021567 82 GLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 161 (311)
Q Consensus 82 ~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a 161 (311)
.+++|++.+.-||.......... . ..+.....+. +..+|||||||+|.++..+++ ++|||+++.+
T Consensus 2 ~~~~f~~~a~~Yd~w~~~~~~~~---~----~~~~~~~~~~--~~~~vLDiGcG~G~~~~~~~~------~~giD~s~~~ 66 (208)
T d1vlma_ 2 MWHIFERFVNEYERWFLVHRFAY---L----SELQAVKCLL--PEGRGVEIGVGTGRFAVPLKI------KIGVEPSERM 66 (208)
T ss_dssp TTHHHHHTHHHHHHHHHHTHHHH---H----HHHHHHHHHC--CSSCEEEETCTTSTTHHHHTC------CEEEESCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH---H----HHHHHHHhhC--CCCeEEEECCCCcccccccce------EEEEeCChhh
Confidence 35678888877776432211111 0 0112222222 245799999999999888853 5899999999
Q ss_pred HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 162 RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 162 ~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.++++ |+.++++|++++ +.++++||.|++.+.-.+..+. ..++++++++|+|||.+++.+
T Consensus 67 ~~~a~~~---~~~~~~~d~~~l-----~~~~~~fD~I~~~~~l~h~~d~--------~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 67 AEIARKR---GVFVLKGTAENL-----PLKDESFDFALMVTTICFVDDP--------ERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp HHHHHHT---TCEEEECBTTBC-----CSCTTCEEEEEEESCGGGSSCH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccc---cccccccccccc-----cccccccccccccccccccccc--------ccchhhhhhcCCCCceEEEEe
Confidence 9988764 689999999987 4568999999987643332211 479999999999999999875
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1.3e-13 Score=124.72 Aligned_cols=132 Identities=17% Similarity=0.242 Sum_probs=100.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+|||+|||+|.+++.+|...|+..++|+|++..|++.| ++.+++|+.|+++|..+. + .+..||+|+.
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~----~--~~~~fDlIvs 181 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA----L--AGQQFAMIVS 181 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG----G--TTCCEEEEEE
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc----c--CCCceeEEEe
Confidence 45789999999999999999999999999999987665554 456788999999997654 2 3679999998
Q ss_pred eCCCCCCCCc-----------hhhhh--------hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRP-----------EHRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~-----------h~krR--------l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
| .|..... +++.. .+...++++..+.|+|||.+++..+.. ..+.+.+.+.+.|+....
T Consensus 182 N--PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~-q~~~v~~~l~~~gf~~i~ 258 (274)
T d2b3ta1 182 N--PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-QGEAVRQAFILAGYHDVE 258 (274)
T ss_dssp C--CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-CHHHHHHHHHHTTCTTCC
T ss_pred c--chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch-HHHHHHHHHHHCCCCeEE
Confidence 8 3332211 01111 122678999999999999999987653 356778888999987776
Q ss_pred eecc
Q 021567 262 LVQD 265 (311)
Q Consensus 262 ~~~d 265 (311)
+.+|
T Consensus 259 ~~kD 262 (274)
T d2b3ta1 259 TCRD 262 (274)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7666
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.48 E-value=1.9e-13 Score=118.81 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=87.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||||||+|..+..+|+..|+..|+|+|+++.+++.+++ ...+|+.++.+|+...... +.....+|.++..+
T Consensus 56 pg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~--~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKY--SGIVEKVDLIYQDI 133 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGT--TTTCCCEEEEEECC
T ss_pred CCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCcccc--ccccceEEEEEecc
Confidence 5789999999999999999999998899999998776665532 2346999999999886221 11234567666555
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe-----C----cHHHHHHHHHHHHhcCCCce
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----D----IEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-----D----~~~~~~~~~~~l~~~g~~~~ 260 (311)
+.|+ ..+.++.+++++|||||.+++.. | ....++...+.++ .|+...
T Consensus 134 ~~~~----------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~-~gf~i~ 189 (209)
T d1nt2a_ 134 AQKN----------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME-GDFKIV 189 (209)
T ss_dssp CSTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH-TTSEEE
T ss_pred cChh----------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH-cCCEEE
Confidence 4432 22588999999999999998853 2 2334444444443 566543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.47 E-value=1.3e-13 Score=121.31 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=76.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+|++. .+++|||.|+.+++.|++ .+. |+.|+++|+.++ + .+++||.|++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~-----~-~~~~fD~i~~ 107 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNL-----N-INRKFDLITC 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGC-----C-CSCCEEEEEE
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCc-cceeeccchhhh-----c-ccccccccce
Confidence 45789999999999999999984 589999988776665543 343 799999999876 2 2578999987
Q ss_pred eCCC-CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 201 QCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 201 ~fpd-P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
.+.. .+... .. -...++++++++|+|||.|++...+.
T Consensus 108 ~~~~~~~~~~--~~---~~~~~l~~~~~~LkpgG~~i~~~~~~ 145 (246)
T d1y8ca_ 108 CLDSTNYIID--SD---DLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp CTTGGGGCCS--HH---HHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred eeeeeeccCC--HH---HHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence 5321 11111 11 11479999999999999999865443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=1.8e-13 Score=122.54 Aligned_cols=125 Identities=15% Similarity=0.234 Sum_probs=91.3
Q ss_pred hhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccC
Q 021567 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 116 ~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~ 191 (311)
.|.+.... ++.+|||+|||+|.+++.+++. +.+++|+|+++ .|.++++.+++ ++.++++|+.+. + +
T Consensus 112 ~~l~~~~~-~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~----~--~ 181 (254)
T d2nxca1 112 KALARHLR-PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAA----L--P 181 (254)
T ss_dssp HHHHHHCC-TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHH----G--G
T ss_pred HHHHhhcC-ccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCC-ceeEEecccccc----c--c
Confidence 44443344 4789999999999999988876 46899999754 45555556676 568899997654 2 3
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
+++||.|+.+...+ ...++++++.++|||||+++++.-.....+.+.+.++++|+....
T Consensus 182 ~~~fD~V~ani~~~-----------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 182 FGPFDLLVANLYAE-----------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp GCCEEEEEEECCHH-----------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred ccccchhhhccccc-----------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEE
Confidence 67899999884311 125788999999999999998532234456778888999986543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.46 E-value=2.1e-13 Score=116.55 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=78.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||||||+|..+..++++ ..+++|+|+++.+++.+ +..+++|+.+..+|+..+ + .+++||.|+..
T Consensus 31 ~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~fD~I~~~ 102 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL-----T-FDGEYDFILST 102 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC-----C-CCCCEEEEEEE
T ss_pred CCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccc-----c-ccccccEEEEe
Confidence 458999999999999999998 46899999887666554 456788999999998876 2 37899999887
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-.+.... ..+.++++++++|+|||++++.+
T Consensus 103 ~~~~~~~~~------~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 103 VVMMFLEAQ------TIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp SCGGGSCTT------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeecCCHH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence 542221111 12589999999999999999864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.45 E-value=1.3e-13 Score=120.25 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=80.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
+.+|||||||+|.++..++++. ..++|||+++.+++.+++....|+.++++|+.++ + .+++||.|++...-.
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~-----~-~~~~fD~I~~~~vle 92 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDA-----Q-LPRRYDNIVLTHVLE 92 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-----C-CSSCEEEEEEESCGG
T ss_pred CCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhccccccccccccccccc-----c-cccccccccccceeE
Confidence 4679999999999999999874 5799999999999998876667899999998876 2 368999998764322
Q ss_pred CCCCchhhhhhhHHHHHHHHH-hcccCCeEEEEEeCc
Q 021567 206 DFNRPEHRWRMVQRSLVEAVS-DLLVHDGKVFLQSDI 241 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~-rvLkpGG~l~~~tD~ 241 (311)
+..+ ...++++++ ++|+|||.+++.+.+
T Consensus 93 h~~d--------~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 93 HIDD--------PVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp GCSS--------HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ecCC--------HHHHHHHHHHHhcCCCceEEEEeCC
Confidence 2111 147889997 899999999998644
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=7.7e-13 Score=116.64 Aligned_cols=123 Identities=13% Similarity=0.045 Sum_probs=91.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeE--EEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLIL--VSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~--V~i 200 (311)
++.+|||||||+|.++..+|+..|+..|+|+|+++.+++.+.+. ..+|+..+.+|+..... . .+..+|. ++.
T Consensus 74 pG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~-~---~~~~~~v~~i~~ 149 (230)
T d1g8sa_ 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQE-Y---ANIVEKVDVIYE 149 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGG-G---TTTCCCEEEEEE
T ss_pred CCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcc-c---ccccceeEEeec
Confidence 57899999999999999999999999999999998888877543 35789999999987632 1 2444444 433
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe---------CcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t---------D~~~~~~~~~~~l~~~g~~~~~ 261 (311)
.+..+. ....++.++.+.|||||.+++.. +....++...+.|++.|+....
T Consensus 150 ~~~~~~----------~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive 209 (230)
T d1g8sa_ 150 DVAQPN----------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp CCCSTT----------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEE
T ss_pred cccchH----------HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence 332221 11478999999999999998852 3345567777888899986543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.43 E-value=8.1e-14 Score=116.94 Aligned_cols=103 Identities=10% Similarity=0.010 Sum_probs=77.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-C---------------CCcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-G---------------ITNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~---------------~~Nv~f~~~Da~~ll~~~~ 188 (311)
++.+|||||||+|..+..||++ +..|+|+|+|+.+++.+++. + ..++.|+++|+.++..
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--- 94 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA--- 94 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH---
T ss_pred CCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc---
Confidence 5789999999999999999998 68999999999888888643 1 1345788888887622
Q ss_pred ccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 189 ~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
....++|.|+..+.-.+... .....+++.++++|||||.+++.+
T Consensus 95 -~~~~~~D~i~~~~~l~~l~~------~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 95 -RDIGHCAAFYDRAAMIALPA------DMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp -HHHHSEEEEEEESCGGGSCH------HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred -ccccceeEEEEEeeeEecch------hhhHHHHHHHHHhcCCCcEEEEEE
Confidence 12467999987644322111 112588999999999999988754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=1.2e-12 Score=111.66 Aligned_cols=115 Identities=13% Similarity=0.188 Sum_probs=82.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC--cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||||||+|.+++.+|+..+ +++|+|+++.+.+.+ +.++++ +++++.+|..+. + ++++||.|
T Consensus 52 ~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~----~--~~~~fD~I 123 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN----V--KDRKYNKI 123 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT----C--TTSCEEEE
T ss_pred CCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh----h--ccCCceEE
Confidence 578999999999999999998865 799999876655544 455664 489999998653 2 47899999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
+++.| . |+.. .....+++++.++|+|||.+++........+...+.+.+
T Consensus 124 i~~~p--~----~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~ 172 (194)
T d1dusa_ 124 ITNPP--I----RAGK-EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD 172 (194)
T ss_dssp EECCC--S----TTCH-HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHH
T ss_pred EEccc--E----Eecc-hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHH
Confidence 98733 2 1111 123578999999999999998866544444444444443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.43 E-value=2.4e-13 Score=121.34 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=81.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
...+|||+|||+|.++..|+.++. ..|+|||.++.+++.|++. +.++++|.++|+.++ +..+++||.|++..
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~I~~~~ 166 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-----TLPPNTYDLIVIQW 166 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-----CCCSSCEEEEEEES
T ss_pred CCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccccccceeEEcccccc-----ccCCCccceEEeec
Confidence 467999999999999999987764 3899999999988888654 456799999999886 44688999999885
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.-.+..+ ....++|++++++|+|||.|++..
T Consensus 167 vl~hl~d------~d~~~~l~~~~~~LkpgG~iii~e 197 (254)
T d1xtpa_ 167 TAIYLTD------ADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp CGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccch------hhhHHHHHHHHHhcCCCcEEEEEe
Confidence 4322111 011488999999999999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.42 E-value=4.6e-13 Score=118.66 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=80.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|..+..+++.. ..+++|||+|+.+++.|++ .+. .++.|.++|+.... + ..+++||.|+
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~---~-~~~~~fD~V~ 98 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH---M-DLGKEFDVIS 98 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC---C-CCSSCEEEEE
T ss_pred CcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc---c-cccccceEEE
Confidence 46899999999999999999874 3589999998887777653 233 47999999986541 1 1467899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 243 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~ 243 (311)
+++.-.+.-.. .. ....++++++++|||||+|++.+.+.+
T Consensus 99 ~~~~l~~~~~~--~~--~~~~~l~~i~~~Lk~gG~~i~~~~~~~ 138 (252)
T d1ri5a_ 99 SQFSFHYAFST--SE--SLDIAQRNIARHLRPGGYFIMTVPSRD 138 (252)
T ss_dssp EESCGGGGGSS--HH--HHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred EcceeeecCCC--HH--HHHHHHHHHhceeCCCCEEEEEecCHH
Confidence 88643221000 00 114799999999999999998765533
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.41 E-value=9e-13 Score=117.07 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=77.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+|||||||+|.++..+++++|+..++++|+ .+.+.+++...++ .+++++.+|+.+. .+.++|.|++
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-------~~~~~D~v~~ 152 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-------LPRKADAIIL 152 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-------CSSCEEEEEE
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-------cccchhheee
Confidence 357899999999999999999999999999995 4566666666665 5799999997543 2457999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...-....+ -....+|++++++|||||+|++.
T Consensus 153 ~~vlh~~~d------~~~~~~L~~~~~~LkPGG~l~i~ 184 (253)
T d1tw3a2 153 SFVLLNWPD------HDAVRILTRCAEALEPGGRILIH 184 (253)
T ss_dssp ESCGGGSCH------HHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccCCc------hhhHHHHHHHHHhcCCCcEEEEE
Confidence 743211100 01137899999999999999885
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=7.7e-13 Score=115.64 Aligned_cols=103 Identities=12% Similarity=-0.001 Sum_probs=79.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC---------------------CCcEEEEEccccch
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---------------------ITNGYFIATNATST 183 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~---------------------~~Nv~f~~~Da~~l 183 (311)
.+.+|||+|||+|..+..||++ +.+|+|||+|+.|++.+++.. ..++.++++|+.++
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred CCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 5679999999999999999997 679999999999998876431 13789999999887
Q ss_pred hhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 184 FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 184 l~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
. +..++.+|.|+....-..... -..+.+++++.++|||||.+++.+
T Consensus 123 ~----~~~~~~fd~i~~~~~l~~~~~------~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 123 P----RTNIGKFDMIWDRGALVAINP------GDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp G----GSCCCCEEEEEESSSTTTSCG------GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c----ccccCceeEEEEEEEEEeccc------hhhHHHHHHHHhhcCCcceEEEEE
Confidence 2 235789999976532211110 122589999999999999988764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.40 E-value=6.4e-13 Score=119.98 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=78.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHHHc---CCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~~~---~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+|||||||+|.++..+|+..| +.+++|+|+++.+++.++++ ...|+.|+++|+.++ +. +++||.|++
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-----~~-~~~fD~v~~ 100 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-----EL-NDKYDIAIC 100 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-----CC-SSCEEEEEE
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc-----cc-cCCceEEEE
Confidence 356899999999999999999877 47899999988777766532 123799999999876 32 467999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-.+..++ ..++++++++|||||.+++.+
T Consensus 101 ~~~l~~~~d~--------~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 101 HAFLLHMTTP--------ETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp ESCGGGCSSH--------HHHHHHHHHTEEEEEEEEEEE
T ss_pred ehhhhcCCCH--------HHHHHHHHHHcCcCcEEEEEE
Confidence 7543322211 478999999999999998764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.5e-13 Score=116.90 Aligned_cols=131 Identities=10% Similarity=-0.090 Sum_probs=90.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---CCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+.+|||||||+|.++..+|+..+ .+++|||+++.+++.+++. ...++.++.+|+..... +.++++||.|++.
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~fD 128 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP---TLPDGHFDGILYD 128 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG---GSCTTCEEEEEEC
T ss_pred CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhccccccccccccccccc---ccccccccceeec
Confidence 567999999999999999998754 5899999988777776543 23568889999887633 3368999999764
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe------------Cc--HHHHHHHHHHHHhcCCCceee
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS------------DI--EEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t------------D~--~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.... ..+..+....+.++++++|+|||||+|.+.+ +. ..+.+.+...+.+.|+....+
T Consensus 129 ~~~~---~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~i 200 (229)
T d1zx0a1 129 TYPL---SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENI 200 (229)
T ss_dssp CCCC---BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGE
T ss_pred cccc---ccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEEE
Confidence 3222 2222222233689999999999999998732 11 123345556667777754433
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=1.6e-12 Score=117.73 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=73.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+++ +.+|+|||+|+... +++++.++ .++.+...|..++ +++||.|+
T Consensus 52 ~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--------~~~fD~i~ 122 (280)
T d2fk8a1 52 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--------AEPVDRIV 122 (280)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--------CCCCSEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--------ccchhhhh
Confidence 57899999999999999999887 47999999876544 44445565 3578887776543 57899987
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-.--+...+ -.+.++++++++|||||++++.+
T Consensus 123 si~~~eh~~~~------~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 123 SIEAFEHFGHE------NYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp EESCGGGTCGG------GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HhhHHHHhhhh------hHHHHHHHHHhccCCCceEEEEE
Confidence 65321111111 12589999999999999999864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=1.8e-12 Score=118.11 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||.|.++..+|++++ ++++||++|+. +.++++..++. .+.+...|... .+++||.|+
T Consensus 61 ~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~--------~~~~fD~i~ 131 (291)
T d1kpia_ 61 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--------FDEPVDRIV 131 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--------CCCCCSEEE
T ss_pred CCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc--------cccccceEe
Confidence 578999999999999999999885 79999998754 45555566764 47887777532 378899987
Q ss_pred Ee-----CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQ-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~-----fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.. ++++-. ..+.+ -.+.++++++++|||||++++.+
T Consensus 132 sie~~eH~~~~~~-~~~~~---~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 132 SLGAFEHFADGAG-DAGFE---RYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp EESCGGGTTCCSS-CCSTT---HHHHHHHHHHHTSCTTCEEEEEE
T ss_pred echhHHhcchhhh-hhHHH---HHHHHHHHHHHhCCCCCceEEEE
Confidence 54 343311 00111 12689999999999999999875
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=1.8e-12 Score=117.75 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=75.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||.|.+++.+|+++ +++|+||++|.. |.+++++.++ +++.+..+|..++ ++++|.|+
T Consensus 62 ~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--------~~~fD~i~ 132 (285)
T d1kpga_ 62 PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------DEPVDRIV 132 (285)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--------CCCCSEEE
T ss_pred CCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--------ccccccee
Confidence 57899999999999999999998 589999999754 4455555554 6799999998665 46788776
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..-.--+.-. + -.+.++++++++|||||++++.+
T Consensus 133 si~~~eh~~~---~---~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 133 SIGAFEHFGH---E---RYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp EESCGGGTCT---T---THHHHHHHHHHHSCTTCEEEEEE
T ss_pred eehhhhhcCc---h---hHHHHHHHHHhhcCCCCcEEEEE
Confidence 5522111100 0 12589999999999999999864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=1.5e-12 Score=113.30 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=75.3
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+. .++..++++|+++ .|.++++..++.|+.++++|+.+.. ..+++||.|+
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~-----~~~~~fD~I~ 149 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-----PEFSPYDVIF 149 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-----GGGCCEEEEE
T ss_pred ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc-----ccccchhhhh
Confidence 5789999999999999999987 4678999999754 4555555668899999999988762 1467899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.+.-++ +.+++.+.|||||++++..
T Consensus 150 ~~~~~~~--------------~p~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 150 VTVGVDE--------------VPETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp ECSBBSC--------------CCHHHHHHEEEEEEEEEEB
T ss_pred hhccHHH--------------hHHHHHHhcCCCcEEEEEE
Confidence 8865332 1245678899999998854
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=3.8e-12 Score=115.00 Aligned_cols=107 Identities=9% Similarity=0.067 Sum_probs=74.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCC----cEEEEEccccchhhhhhccCCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGIT----NGYFIATNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~----Nv~f~~~Da~~ll~~~~~~~~~s~D~ 197 (311)
..+|||||||+|.++..||++ +.+|+|+|+|+.+++.|++ .+.. +..+..+|...+... ++ ....||.
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fd~ 132 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD-VP-AGDGFDA 132 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH-SC-CTTCEEE
T ss_pred CCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc-cC-CCCCceE
Confidence 568999999999999999987 5799999998877766643 2221 345556666554221 22 3578999
Q ss_pred EEEeC------CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 198 VSIQC------PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 198 V~i~f------pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
|++.+ |++.... . -...+|++++++|||||.|++.+-+.
T Consensus 133 v~~~~~~~~~~~~~~~~~--~----~~~~~l~~~~~~LkpgG~li~~~~~~ 177 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQ--S----EHRLALKNIASMVRPGGLLVIDHRNY 177 (292)
T ss_dssp EEECSSCGGGSCCTTSSS--H----HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEEecCchhhcCCcccCh--H----HHHHHHHHHHHHcCcCcEEEEeecCH
Confidence 87642 3331100 0 11479999999999999999976543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=1.5e-11 Score=107.98 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=82.3
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++.+|||+|||+|.++..+|+. .|+..|+|+|+++.+++.+.+ ....|+..+..|+..... ++.....+|.|+..
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~--~~~~~~~vD~i~~d 150 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE--YRALVPKVDVIFED 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG--GTTTCCCEEEEEEC
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccc--ccccccceEEEEEE
Confidence 5789999999999999999998 588999999998887777643 345789999999877522 23345789999887
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.|. ....+++++.+.|||||.+++.+
T Consensus 151 ~~~~~----------~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 151 VAQPT----------QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CCSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccc----------hHHHHHHHHHHhcccCCeEEEEE
Confidence 76553 12478999999999999999863
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=1.9e-11 Score=112.43 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=93.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|||+|.+++++|.. ..+|+++|+++.+++. ++.+|++|+.++++|+.+.+... +.....||.|++
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~-~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRL-EKEGERFDLVVL 221 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHH-HHTTCCEEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhh-HhhhcCCCEEEE
Confidence 4689999999999999999875 5689999987665554 45678899999999999875432 334678999999
Q ss_pred eCCCCCCCCchhhhhhh--HHHHHHHHHhcccCCeEEEEEeCc-----HHHHHHHHHHHHhcCCCc
Q 021567 201 QCPNPDFNRPEHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~--~~~~l~~i~rvLkpGG~l~~~tD~-----~~~~~~~~~~l~~~g~~~ 259 (311)
.-| ...+.+....+.. ..+++..+.++|+|||.+++.|.+ ..+.+.+.+.+...+...
T Consensus 222 DpP-~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~ 286 (318)
T d1wxxa2 222 DPP-AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL 286 (318)
T ss_dssp CCC-CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cCC-ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCE
Confidence 833 2222222222222 268899999999999999997643 334444445566666543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.26 E-value=1.6e-11 Score=109.44 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=76.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH---HHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~---~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+|||||||+|.++..+++++|+.+++++|+. +.+.+++++.+. +++.++.+|..+- .+..+|.|++
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-------~p~~~D~v~~ 153 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP-------LPVTADVVLL 153 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-------CSCCEEEEEE
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeecccc-------ccccchhhhc
Confidence 3578999999999999999999999999999973 455666666665 5699999986542 2346899987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+.-..+.+ -....+|++++++|||||+|++.
T Consensus 154 ~~vLh~~~d------~~~~~lL~~i~~~LkpgG~llI~ 185 (256)
T d1qzza2 154 SFVLLNWSD------EDALTILRGCVRALEPGGRLLVL 185 (256)
T ss_dssp ESCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccCc------HHHHHHHHHHHhhcCCcceeEEE
Confidence 743211100 01147899999999999999885
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=7.5e-12 Score=109.67 Aligned_cols=96 Identities=15% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHH----HHHHHHHcC-----CCcEEEEEccccchhhhhhccCCCc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTH----CRDSLQLSG-----ITNGYFIATNATSTFRSIVASYPGK 194 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~----a~~~a~~~~-----~~Nv~f~~~Da~~ll~~~~~~~~~s 194 (311)
++.+|||||||+|..+..||+. .|...|+|+|+.+. |.+++++.+ ..|+.+..+|+.... ..++.
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~-----~~~~~ 150 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-----AEEAP 150 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-----GGGCC
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc-----chhhh
Confidence 4679999999999999999986 67889999997544 444444433 467999999998762 24678
Q ss_pred EeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 195 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 195 ~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
||.|++....+. ..+.+.+.|||||++++..
T Consensus 151 fD~I~~~~~~~~--------------ip~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 151 YDAIHVGAAAPV--------------VPQALIDQLKPGGRLILPV 181 (224)
T ss_dssp EEEEEECSBBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred hhhhhhhcchhh--------------cCHHHHhhcCCCcEEEEEE
Confidence 999998865442 2345678999999999854
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.20 E-value=1.4e-10 Score=106.78 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=92.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|.+++.+|.... .+|+++|+++.+++. ++.+|+ ++++++++|+.+.+.. ++.....||.|+
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~-~~~~~~~fD~Vi 222 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEK-LQKKGEKFDIVV 222 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH-HHHTTCCEEEEE
T ss_pred CCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHH-HHhccCCCCchh
Confidence 478999999999999999998753 489999987665554 455677 5799999999887543 223467899999
Q ss_pred EeCCCCCCCCchhhhhh--hHHHHHHHHHhcccCCeEEEEEeCc-----HHHHHHHHHHHHhcCCC
Q 021567 200 IQCPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl--~~~~~l~~i~rvLkpGG~l~~~tD~-----~~~~~~~~~~l~~~g~~ 258 (311)
+.-| ...+.+...... ...+++..+.++|+|||.|++.|-. +.+.+.+.+...+.|..
T Consensus 223 ~DpP-~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~ 287 (324)
T d2as0a2 223 LDPP-AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKF 287 (324)
T ss_dssp ECCC-CSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEE
T ss_pred cCCc-cccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCe
Confidence 8733 222222222222 2367899999999999999987643 34445555556666643
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.7e-11 Score=113.11 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=71.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH-----------c--CCCcEEEEEccccchhhhhhccC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-----------S--GITNGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~-----------~--~~~Nv~f~~~Da~~ll~~~~~~~ 191 (311)
++.+|||||||+|.+++.+|+..+..+++|||++..+.+.+++ . ...++.|+++|+.+. + + .
T Consensus 151 ~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~-~--~--~ 225 (328)
T d1nw3a_ 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE-E--W--R 225 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH-H--H--H
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc-c--c--c
Confidence 5789999999999999999999888899999987655444321 1 245899999999876 1 1 1
Q ss_pred CC--cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 192 PG--KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 192 ~~--s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+. ..|+|+++---.+ . .+ ...|.++.++|||||+++.
T Consensus 226 ~~~~~advi~~~~~~f~---~----~~--~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 226 ERIANTSVIFVNNFAFG---P----EV--DHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp HHHHHCSEEEECCTTTC---H----HH--HHHHHHHHTTCCTTCEEEE
T ss_pred cccCcceEEEEcceecc---h----HH--HHHHHHHHHhCCCCcEEEE
Confidence 22 3466766521111 0 01 3678999999999999976
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=5.3e-11 Score=106.37 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=72.9
Q ss_pred CeEEEEeccccHHHHHHHhh----CCC--CeEEEEchHHHHHHHHHHc-----CCCcEE--EEEccccchhhhh-hccCC
Q 021567 127 PLVVDIGSGNGLFLLGMARK----RKD--LNFLGLELVTHCRDSLQLS-----GITNGY--FIATNATSTFRSI-VASYP 192 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~----~p~--~~vvGiDi~~~a~~~a~~~-----~~~Nv~--f~~~Da~~ll~~~-~~~~~ 192 (311)
-+|||||||+|.++..+++. +++ ..++|||.++.+++.+++. .+.++. +...+++.+.... .+..+
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 37999999999998887653 444 3689999988777766542 234444 4555555442211 13357
Q ss_pred CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 193 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 193 ~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++||.|++...-.|..+. ..++++++++|+|||.+++.+
T Consensus 122 ~~fD~I~~~~~l~~~~d~--------~~~l~~l~~~LkpgG~l~i~~ 160 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVKDI--------PATLKFFHSLLGTNAKMLIIV 160 (280)
T ss_dssp CCEEEEEEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEEEE
T ss_pred CceeEEEEccceecCCCH--------HHHHHHHHhhCCCCCEEEEEE
Confidence 899999987554443221 489999999999999998864
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=1.1e-10 Score=106.88 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=74.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchH---HHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~---~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.+++.+|+..+ .+|+|+|.+ ..+.+.++.+++ +++.++++|+.++ +.+..++|.|+..
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~-----~~~~~~~D~ivs~ 107 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-----ELPVEKVDIIISE 107 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-----CCSSSCEEEEEEC
T ss_pred cCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc-----ccccceeEEEeee
Confidence 57899999999999998888743 589999975 345566666676 5699999999887 4457899999765
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
........ .-.-+.++..+.++|||||.++
T Consensus 108 ~~~~~l~~-----e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 108 WMGYCLFY-----ESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp CCBBTBTB-----TCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeecc-----HHHHHHHHHHHHhcCCCCeEEE
Confidence 33221110 0112588999999999999986
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=1.7e-10 Score=105.90 Aligned_cols=101 Identities=15% Similarity=0.260 Sum_probs=74.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.+++.+|+.. ..+|+|+|.++ .|.+.+++++. .++.++++|+.++ +.++.++|.|+.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l-----~~~~~~~D~i~s 111 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-----HLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSSSCEEEEEE
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhc-----cCcccceeEEEE
Confidence 35789999999999999888764 35899999754 45566666665 5799999999887 445789999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
......... ....+.++....++|||||.++
T Consensus 112 e~~~~~~~~-----e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 112 EWMGYFLLY-----ESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCCBTTBST-----TCCHHHHHHHHHHHEEEEEEEE
T ss_pred Eecceeecc-----chhHHHHHHHHHhccCCCeEEE
Confidence 533221111 0122578888999999999985
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=3.3e-10 Score=103.05 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=74.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH---HHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC---RDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a---~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.+++.+|+..+ .+|+|+|.++.+ .+.+++++ .+++.++++|+.++ +.++..+|.|+.
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l-----~~~~~~~D~Ivs 108 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-----HLPVEKVDVIIS 108 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSCSCEEEEEE
T ss_pred CcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh-----cCccccceEEEE
Confidence 357899999999999999998754 589999986544 34444455 46899999999987 335789999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
.......-. ...-+.++....+.|+|||.++
T Consensus 109 e~~~~~~~~-----e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 109 EWMGYFLLF-----ESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp CCCBTTBTT-----TCHHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeeccc-----ccccHHHHHHHHhcCCCCcEEe
Confidence 543332111 1122577888889999999987
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.06 E-value=1.2e-10 Score=101.93 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=72.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||||||+|.++..||+.. .+|+++|+++.+.+.++++ ...|+.++.+|+.... + ..+.||.|++..
T Consensus 70 ~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~----~-~~~pfD~Iiv~~ 142 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY----E-EEKPYDRVVVWA 142 (224)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC----G-GGCCEEEEEESS
T ss_pred ccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcc----h-hhhhHHHHHhhc
Confidence 57899999999999999999874 6899999877766666542 4679999999987642 1 357899999875
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.-+. +.+.+.+.|+|||++++-.
T Consensus 143 a~~~--------------ip~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 143 TAPT--------------LLCKPYEQLKEGGIMILPI 165 (224)
T ss_dssp BBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred chhh--------------hhHHHHHhcCCCCEEEEEE
Confidence 4332 2234567899999998854
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.03 E-value=3.5e-10 Score=92.75 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=73.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||||.+++..+.+.. .+++++|.+..|.+.+ +..+.. ++.++++|+...+.. ....+|.|+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~----~~~~fDiIf 88 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC----LTGRFDLVF 88 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH----BCSCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc----cccccceeE
Confidence 467999999999999999888865 4999999876655544 444654 499999999887542 467899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHH--HhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i--~rvLkpGG~l~~~t 239 (311)
+. +|+ ... .....++.+ .+.|+|||.+++.+
T Consensus 89 ~D--PPy-~~~------~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 89 LD--PPY-AKE------TIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp EC--CSS-HHH------HHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ec--hhh-ccc------hHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 75 233 111 113555555 36799999999875
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.02 E-value=1.3e-09 Score=100.03 Aligned_cols=114 Identities=11% Similarity=0.153 Sum_probs=80.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH----HHHHHHcCC--CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a----~~~a~~~~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||++||+|.+++.+|... ...|++||+++.+ .++++.+++ .+++|+++|+.+.+.... .....||.|
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~-~~~~~fD~I 221 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYAR-RHHLTYDII 221 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHH-HTTCCEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHH-hhcCCCCEE
Confidence 46899999999999999888753 3579999986544 445555666 479999999998865432 235689999
Q ss_pred EEeCCCCCCCCchhhhhhh--HHHHHHHHHhcccCCeEEEEEeCc
Q 021567 199 SIQCPNPDFNRPEHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~--~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
++. |+.+-+.+....+.. ..++++.+.++|+|||.|++.|..
T Consensus 222 i~D-PP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 222 IID-PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EEC-CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEc-ChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 887 333322211111222 257899999999999999998754
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.4e-09 Score=96.45 Aligned_cols=136 Identities=10% Similarity=0.057 Sum_probs=91.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchh-hhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTF-RSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll-~~~~~~~~~s~D~V 198 (311)
...++||||||+|++.+.+|.+.|+.+++|+|+++.|++.| +.+++. ++.+++.+....+ ...+...++.||.|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 34689999999999999999999999999999977665554 455664 4888887665432 22222346789999
Q ss_pred EEeCCCCCCCCchh-------hh--------------hh--------hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHH
Q 021567 199 SIQCPNPDFNRPEH-------RW--------------RM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK 249 (311)
Q Consensus 199 ~i~fpdP~~k~~h~-------kr--------------Rl--------~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~ 249 (311)
+.| .|+...... +. .+ +-.+++++..+.++..|.+.+.....+..+.+.
T Consensus 141 vsN--PPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~ 218 (250)
T d2h00a1 141 MCN--PPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLK 218 (250)
T ss_dssp EEC--CCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHH
T ss_pred Eec--CcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHH
Confidence 988 454432100 00 00 124566777788899888865544444456678
Q ss_pred HHHHhcCCCceee
Q 021567 250 QQFLEYGKGKLVL 262 (311)
Q Consensus 250 ~~l~~~g~~~~~~ 262 (311)
+.+.+.|+..+.+
T Consensus 219 ~~L~~~g~~~i~~ 231 (250)
T d2h00a1 219 EELRIQGVPKVTY 231 (250)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcCCCeEEE
Confidence 8888888765444
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.01 E-value=1.9e-10 Score=100.52 Aligned_cols=96 Identities=14% Similarity=0.234 Sum_probs=70.5
Q ss_pred CCCeEEEEeccccHHHHHHHhh------CCCCeEEEEchHHHHHHHHH----H-----cCCCcEEEEEccccchhhhhhc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK------RKDLNFLGLELVTHCRDSLQ----L-----SGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~------~p~~~vvGiDi~~~a~~~a~----~-----~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
++.+|||||||||.++..||+. .+..+|+++|..+...+.++ . .+..|+.++++|+.+...
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~---- 155 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP---- 155 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG----
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc----
Confidence 4689999999999999999875 34568999997544333332 1 246799999999987622
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..+.||.|++...-+. +-+.+.+.|||||++++..
T Consensus 156 -~~~~fD~Iiv~~a~~~--------------~p~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 156 -PNAPYNAIHVGAAAPD--------------TPTELINQLASGGRLIVPV 190 (223)
T ss_dssp -GGCSEEEEEECSCBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred -cccceeeEEEEeechh--------------chHHHHHhcCCCcEEEEEE
Confidence 3678999999865432 1234568999999998754
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.00 E-value=3.5e-10 Score=101.07 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=75.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|.+++.+|++. ..+++++|+++.|.+ +++.++++| ++++++|+.++. ..+.+|.|+
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~------~~~~~D~Ii 179 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------GENIADRIL 179 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------CCSCEEEEE
T ss_pred CccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc------cCCCCCEEE
Confidence 47899999999999999999874 579999998765554 455667765 999999998762 367899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++.| |. ...+++++.+.|+|||.+++.
T Consensus 180 ~~~p-~~-----------~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 180 MGYV-VR-----------THEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp ECCC-SS-----------GGGGHHHHHHHEEEEEEEEEE
T ss_pred ECCC-Cc-----------hHHHHHHHHhhcCCCCEEEEE
Confidence 8743 11 136888899999999999764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=5.7e-11 Score=104.12 Aligned_cols=132 Identities=13% Similarity=0.028 Sum_probs=81.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CCCc----------------------------
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITN---------------------------- 172 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~~N---------------------------- 172 (311)
++.+|||||||+|.++..++... ...|+|+|+++.+++.+++. ....
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 45689999999999988887764 34799999987777666432 1110
Q ss_pred -E-EEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH--------
Q 021567 173 -G-YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-------- 242 (311)
Q Consensus 173 -v-~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~-------- 242 (311)
+ .....+...- ....+.++++||.|+..+.-.+.... +.....++++++++|||||.+++.+-..
T Consensus 130 ~~~~~~~~~~~~~-~~~~~~~~~~fD~i~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~ 204 (257)
T d2a14a1 130 AVKRVLKCDVHLG-NPLAPAVLPLADCVLTLLAMECACCS----LDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK 204 (257)
T ss_dssp HEEEEEECCTTSS-STTTTCCCCCEEEEEEESCHHHHCSS----HHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred hhhcccccccccc-cccccccCCcccEEeehhhHHHhccc----HHHHHHHHHHHHhccCCCcEEEEEEecccccceecc
Confidence 0 0111111110 00113357899999987642111000 0112478999999999999999864110
Q ss_pred -------HHHHHHHHHHHhcCCCceee
Q 021567 243 -------EVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 243 -------~~~~~~~~~l~~~g~~~~~~ 262 (311)
--.+++.+.+++.|+....+
T Consensus 205 ~~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 205 REFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp EEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccccccCCCHHHHHHHHHHCCCEEEEE
Confidence 01466778889999875544
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=6.7e-09 Score=88.50 Aligned_cols=161 Identities=12% Similarity=0.059 Sum_probs=105.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++..+||++||+|.++..+++++|+.+++|+|....|++.+++.- ..++.+++++..++-...-....+.||.|.+.
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~D 102 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD 102 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeec
Confidence 578999999999999999999999999999999888888776431 35799999988775221112246899999887
Q ss_pred CCC--CCCCCchhhhhhh--HHHHHHHHHhcccCCeEEEEEeCcHHHHHHH-HHHHHhcCCCceeeeccccccccCCCCC
Q 021567 202 CPN--PDFNRPEHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM-KQQFLEYGKGKLVLVQDECDTKTNQGGW 276 (311)
Q Consensus 202 fpd--P~~k~~h~krRl~--~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~-~~~l~~~g~~~~~~~~d~y~~~~~~~~~ 276 (311)
+.- +..+.. .|.+ ..+.|....++|+|||.+.+.+-+. .-+.. .+.+.+.....+ +
T Consensus 103 lGvSs~Qld~~---~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s-~Edr~vk~~f~~~~~~~~-i-------------- 163 (192)
T d1m6ya2 103 LGVSTYQLKGE---NRELENLKEFLKKAEDLLNPGGRIVVISFHS-LEDRIVKETFRNSKKLRI-L-------------- 163 (192)
T ss_dssp CSCCHHHHHTS---HTHHHHHHHHHHHGGGGEEEEEEEEEEESSH-HHHHHHHHHHHHCSSEEE-S--------------
T ss_pred cchhHhhhhhh---hccchhHHHHHHHHHHhcCCCCeeeeecccc-HHHHHHHHHHhhcccccc-C--------------
Confidence 542 111110 1222 2688999999999999999877442 22233 344444322111 1
Q ss_pred CCCCCCCCCCHHHHHHHHcCCCeEEEEEEe
Q 021567 277 LGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306 (311)
Q Consensus 277 ~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k 306 (311)
...| -.+|+-|.+--.+-++-.--+++|
T Consensus 164 -~~k~-I~ps~~Ei~~NpRsrSaklr~~~k 191 (192)
T d1m6ya2 164 -TEKP-VRPSEEEIRENPRARSGRLRAAER 191 (192)
T ss_dssp -CSSC-BCCCHHHHHHCGGGTTCEEEEEEE
T ss_pred -CCCC-cCcCHHHHHhCcchHhhhhheeEe
Confidence 1112 346777877766666655555544
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=2.9e-09 Score=92.20 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=75.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHH----HHHHHHHHcCCC-cEEEEEccccchhhhhhc-cCCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVA-SYPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~----~a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~-~~~~s~D~V 198 (311)
..+|||||||+|..++.+|+..+ +.+++++|+.+ .|.+.++..|+. +++++.+|+.+.++.+.. ...+.||.|
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i 136 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 136 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccccee
Confidence 46899999999999999999854 68999999754 455555666774 599999999988655321 235689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++. .+ +........+.+..++|+|||.+++
T Consensus 137 fiD---~~------~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 137 FLD---HW------KDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp EEC---SC------GGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eec---cc------ccccccHHHHHHHhCccCCCcEEEE
Confidence 875 22 1111122456778899999998764
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.96 E-value=5.8e-10 Score=96.93 Aligned_cols=95 Identities=16% Similarity=0.266 Sum_probs=73.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|..+..||+.. +.+++++|. .+.|.+++++.+..|+.++++|+..... ..+.||.|++
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~-----~~~pfD~Iiv 151 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-----PKAPYDVIIV 151 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred ccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc-----ccCcceeEEe
Confidence 57899999999999999999874 367999995 4567777777899999999999987522 4688999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-+.. -+.+.+.|+|||++++-.
T Consensus 152 ~~a~~~i--------------p~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 152 TAGAPKI--------------PEPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp CSBBSSC--------------CHHHHHTEEEEEEEEEEE
T ss_pred ecccccC--------------CHHHHHhcCCCCEEEEEE
Confidence 8543321 122456799999998753
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.94 E-value=1.5e-09 Score=93.08 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=75.0
Q ss_pred CCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 122 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 122 ~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++-++.+|||+|||||.+++.++...+ .+++|+|+++.+++.++++ ..++.|+++|+.++ ++.||.|++|
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N-~~~~~~~~~D~~~l--------~~~fD~Vi~N 114 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRN-CGGVNFMVADVSEI--------SGKYDTWIMN 114 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHH-CTTSEEEECCGGGC--------CCCEEEEEEC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHc-cccccEEEEehhhc--------CCcceEEEeC
Confidence 333578999999999999998888754 5899999999999887654 57899999998765 5789999888
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
.|+- ..++..+..|++... .++..++... .....+.+...+...+
T Consensus 115 --PPfg----~~~~~~D~~fl~~a~---~~~~~iy~ih-~~~~~~~i~~~~~~~~ 159 (197)
T d1ne2a_ 115 --PPFG----SVVKHSDRAFIDKAF---ETSMWIYSIG-NAKARDFLRREFSARG 159 (197)
T ss_dssp --CCC-----------CHHHHHHHH---HHEEEEEEEE-EGGGHHHHHHHHHHHE
T ss_pred --cccc----hhhhhchHHHHHHHH---hcCCeEEEeh-hhhHHHHHHHHhhcCc
Confidence 3431 112233356766543 3455555422 1222334444444444
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.88 E-value=1e-08 Score=93.68 Aligned_cols=126 Identities=12% Similarity=0.083 Sum_probs=95.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---------CCCcEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------GITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---------~~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
+..+||.||.|.|..+..+++..|..+++.||+.+..++.+++. .-++++++.+|+...+.. .+..+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~----~~~~y 152 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----TEERY 152 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----CCCCE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh----cCCcc
Confidence 45789999999999999999888888999999876655544421 135799999999998653 46789
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC-----cHHHHHHHHHHHHhc
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-----IEEVMLRMKQQFLEY 255 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD-----~~~~~~~~~~~l~~~ 255 (311)
|+|++..+||+... ....++.+.+|++.+++.|+|||.+.+.+. ...+...+.+.+.+.
T Consensus 153 DvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~ 216 (312)
T d1uira_ 153 DVVIIDLTDPVGED-NPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA 216 (312)
T ss_dssp EEEEEECCCCBSTT-CGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT
T ss_pred cEEEEeCCCccccc-chhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh
Confidence 99999988886432 233457778999999999999999998642 223444555666554
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=5.7e-10 Score=99.26 Aligned_cols=133 Identities=12% Similarity=0.063 Sum_probs=83.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---CCC------------------------------
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GIT------------------------------ 171 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---~~~------------------------------ 171 (311)
.+.++||||||+|.+.+..+.... .+|+|+|+++.+++.+++. ...
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 467999999999988766565543 4899999988877766531 000
Q ss_pred -cEEEEEccccchhh-hhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc--------
Q 021567 172 -NGYFIATNATSTFR-SIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------- 241 (311)
Q Consensus 172 -Nv~f~~~Da~~ll~-~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-------- 241 (311)
....+.+|+..--. ...+..++++|.|+..|.-.+.... +-....++++++++|||||.|++.+..
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~----~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~ 208 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPD----LASFQRALDHITTLLRPGGHLLLIGALEESWYLAG 208 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSS----HHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccC----HHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence 11234445433100 0012245789999987653221100 011258899999999999999885310
Q ss_pred -------HHHHHHHHHHHHhcCCCceee
Q 021567 242 -------EEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 242 -------~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.--.+++.+.+.+.|+.....
T Consensus 209 ~~~~~~~~~t~e~v~~~l~~aGf~v~~~ 236 (263)
T d2g72a1 209 EARLTVVPVSEEEVREALVRSGYKVRDL 236 (263)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 012467888899999875543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=4.7e-09 Score=88.52 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=75.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.++||++||||.+++..+.+.. ..++.||.+..+.+. ++..+..|+.++++|+...+. .....+|.|++
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~----~~~~~fDlIf~ 117 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA----QKGTPHNIVFV 117 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS----SCCCCEEEEEE
T ss_pred chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccc----ccccccCEEEE
Confidence 357899999999999999988864 489999987665554 444567899999999988743 24678999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHH--hcccCCeEEEEEeC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSD 240 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~--rvLkpGG~l~~~tD 240 (311)
. +|+.+. ..+..++.+. .+|+++|.+++.++
T Consensus 118 D--PPY~~~-------~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 118 D--PPFRRG-------LLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp C--CSSSTT-------THHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred c--Cccccc-------hHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 6 343221 1245566664 46999999999764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=9.4e-09 Score=89.30 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchH----HHHHHHHHHcCCC-cEEEEEccccchhhhhhc-cCCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATSTFRSIVA-SYPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~----~~a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~-~~~~s~D~V 198 (311)
..+|||||||+|..++.+|+..| +.+++.+|+. +.|.+..++.|+. ++.++.+|+.+.++..+. ..+++||.|
T Consensus 60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i 139 (219)
T d2avda1 60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 139 (219)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence 57899999999999999999865 7899999974 4566666667764 599999999988765432 236789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++. .+ +. .....++.+.+.|+|||.+++
T Consensus 140 fiD---~d--k~------~y~~~~~~~~~lL~~GGvii~ 167 (219)
T d2avda1 140 VVD---AD--KE------NCSAYYERCLQLLRPGGILAV 167 (219)
T ss_dssp EEC---SC--ST------THHHHHHHHHHHEEEEEEEEE
T ss_pred EEe---CC--HH------HHHHHHHHHHHHhcCCcEEEE
Confidence 886 21 11 235788999999999999987
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.85 E-value=2.6e-09 Score=97.41 Aligned_cols=110 Identities=12% Similarity=0.164 Sum_probs=77.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC--cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT--NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||++||||.+++.+|.. ++.|++||.++.+++.++ .+++. +++|+++|+.+.+.... .....||.|
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~-~~~~~fD~I 208 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE-RRGSTYDII 208 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH-HHTCCBSEE
T ss_pred CCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHh-hcCCCCCEE
Confidence 3679999999999999999986 568999998876665554 45664 59999999998875432 135689999
Q ss_pred EEeCCCCCC-CCchh-hhhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDF-NRPEH-RWRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~-k~~h~-krRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++. | |.+ +.+.. ...+ -...+++.+.++|+|||.+++.|
T Consensus 209 ilD-P-P~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 209 LTD-P-PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp EEC-C-CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred EEC-C-CcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 886 2 221 11110 0111 12467788899999999766654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=9.1e-10 Score=104.12 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=65.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-----------C--CCcEEE-EEccccchhhhhhcc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----------G--ITNGYF-IATNATSTFRSIVAS 190 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-----------~--~~Nv~f-~~~Da~~ll~~~~~~ 190 (311)
++.++||||||+|.+++.+|+.++..+++|||+++.+++.|+++ + ..++.+ ..++.... + .++.
T Consensus 216 pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~-~-~~d~ 293 (406)
T d1u2za_ 216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN-N-RVAE 293 (406)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC-H-HHHH
T ss_pred CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhc-c-cccc
Confidence 57899999999999999999998878999999876554444321 1 223333 33433322 1 1110
Q ss_pred CCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 191 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 191 ~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
.-...|+|+++.--. ... -...|.++.+.|||||+|+.
T Consensus 294 ~~~~adVV~inn~~f---~~~------l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 294 LIPQCDVILVNNFLF---DED------LNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp HGGGCSEEEECCTTC---CHH------HHHHHHHHHTTCCTTCEEEE
T ss_pred ccccceEEEEecccC---chH------HHHHHHHHHHhcCCCcEEEE
Confidence 113467777652100 011 14778999999999999875
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.81 E-value=4.2e-09 Score=94.42 Aligned_cols=123 Identities=11% Similarity=0.138 Sum_probs=81.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
..+++|+|||+|.+++.+|+ +|+.+++|+|++..|++.+ +.++..+ +.+..+|..+.+. ...+.||.|+.
T Consensus 111 ~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~----~~~~~fDlIVs 185 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK----EKFASIEMILS 185 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG----GGTTTCCEEEE
T ss_pred ccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccc----cccCcccEEEE
Confidence 46899999999999999985 6899999999987665554 4556654 7788888776532 23578999999
Q ss_pred eCCCCCCCCc---------hhhhhhhH----HHHHH-HHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 201 QCPNPDFNRP---------EHRWRMVQ----RSLVE-AVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 201 ~fpdP~~k~~---------h~krRl~~----~~~l~-~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
|= |..+.. +++..+.. -.+++ -+.+.|+|||.+++..+.. ..+.+.+.+.+.|
T Consensus 186 NP--PYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~-Q~~~v~~l~~~~g 252 (271)
T d1nv8a_ 186 NP--PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED-QVEELKKIVSDTV 252 (271)
T ss_dssp CC--CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT-CHHHHTTTSTTCE
T ss_pred cc--cccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH-HHHHHHHHHHhCC
Confidence 82 322211 11111110 02222 2467899999999988653 3555555555544
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.77 E-value=4.8e-08 Score=83.44 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=76.4
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 121 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 121 f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
.++-++.+|||+|||+|.+++.++.+. ..+++|+|+++.+++.++++ + .+..++.+|+..+ +..||
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~-~~~~~~~~d~~~~--------~~~fD 111 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFK-GKFKVFIGDVSEF--------NSRVD 111 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGT-TSEEEEESCGGGC--------CCCCS
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcC-CCceEEECchhhh--------CCcCc
Confidence 333357899999999999999988764 35899999988777766543 3 3688999998664 56799
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe-CcHHHHHHHHHHHHhcCCCc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-D~~~~~~~~~~~l~~~g~~~ 259 (311)
.|+++ .|+-.. .+.....++..... +++.++... ........+.....+.|+..
T Consensus 112 ~Vi~n--PP~~~~----~~~~d~~~l~~~~~---~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i 166 (201)
T d1wy7a1 112 IVIMN--PPFGSQ----RKHADRPFLLKAFE---ISDVVYSIHLAKPEVRRFIEKFSWEHGFVV 166 (201)
T ss_dssp EEEEC--CCCSSS----STTTTHHHHHHHHH---HCSEEEEEEECCHHHHHHHHHHHHHTTEEE
T ss_pred EEEEc--Cccccc----cccccHHHHHHHHh---hcccchhcccchHHHHHHHHHHHhhcCceE
Confidence 99887 343221 12223455554433 344444432 23333444555556777654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=4.3e-08 Score=81.64 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=66.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|||+|.+++..+.+ ++.++++|.++.+.+.+ +..++.+ .+...|+..++... ......||.|++
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~-~~~~~~fD~If~ 116 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEA-KAQGERFTVAFM 116 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHH-HHTTCCEEEEEE
T ss_pred CCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccc-cccCCccceeEE
Confidence 4679999999999999998887 46899999876655544 4456643 45555555443221 124678999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHH--HhcccCCeEEEEEeC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSD 240 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i--~rvLkpGG~l~~~tD 240 (311)
+ +|+ ..... +.+.++ ..+|+|||.+++.++
T Consensus 117 D--PPY-~~~~~-------~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 117 A--PPY-AMDLA-------ALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp C--CCT-TSCTT-------HHHHHHHHHTCEEEEEEEEEEEE
T ss_pred c--ccc-ccCHH-------HHHHHHHHcCCcCCCeEEEEEec
Confidence 5 333 22111 222322 368999999998753
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.73 E-value=3.3e-08 Score=86.25 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=80.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchH----HHHHHHHHHcCCC-cEEEEEccccchhhhhhcc--CCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATSTFRSIVAS--YPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~----~~a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~--~~~s~D~ 197 (311)
..+||||||++|..++.+|+..| +.+++.+|.. ..|.+..++.|.. +++++.+|+.+.++.+... .+++||.
T Consensus 60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~ 139 (227)
T d1susa1 60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 139 (227)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence 57899999999999999999866 6899999974 4566666667764 5999999999988765321 2568999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
|++. -+ +. -...+++.+.+.|+|||.+++
T Consensus 140 iFiD---a~--k~------~y~~~~e~~~~ll~~gGiii~ 168 (227)
T d1susa1 140 IFVD---AD--KD------NYLNYHKRLIDLVKVGGVIGY 168 (227)
T ss_dssp EEEC---SC--ST------THHHHHHHHHHHBCTTCCEEE
T ss_pred EEec---cc--hh------hhHHHHHHHHhhcCCCcEEEE
Confidence 9885 22 11 236899999999999999987
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.72 E-value=1.7e-08 Score=84.99 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=75.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||++||||.+++..+.+.. ..+++||.+..+.+.++ ..+. .++.++++|+...+.... .....||.|+
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~-~~~~~fDlIf 118 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFY-EEKLQFDLVL 118 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhc-ccCCCcceEE
Confidence 468999999999999999998853 48999998766655543 3454 479999999998765432 1356799987
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHH--hcccCCeEEEEEeC
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSD 240 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~--rvLkpGG~l~~~tD 240 (311)
+. +|+ ... .....++.+. .+|+|+|.+++.++
T Consensus 119 lD--PPY-~~~------~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 119 LD--PPY-AKQ------EIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp EC--CCG-GGC------CHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ec--hhh-hhh------HHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 65 233 111 1245677664 47999999999764
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.70 E-value=4.7e-08 Score=87.62 Aligned_cols=121 Identities=10% Similarity=0.048 Sum_probs=89.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------------CCCcEEEEEccccchhhhhhcc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------------GITNGYFIATNATSTFRSIVAS 190 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------------~~~Nv~f~~~Da~~ll~~~~~~ 190 (311)
+..+||-||+|.|..+..+.+ +|..+++.||+.+...+.+++. .-++++++.+|+...+..
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~---- 146 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---- 146 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----
T ss_pred CCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc----
Confidence 457999999999999998886 4567899999876666555421 235799999999988643
Q ss_pred CCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHhc
Q 021567 191 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEY 255 (311)
Q Consensus 191 ~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~~ 255 (311)
+..+|+|++..++|.- .-.++.+.+|++.+++.|+|||.+++.+.+. .....+.+.+.+.
T Consensus 147 -~~~yDvIi~D~~~~~~----~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~ 210 (276)
T d1mjfa_ 147 -NRGFDVIIADSTDPVG----PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV 210 (276)
T ss_dssp -CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH
T ss_pred -cCCCCEEEEeCCCCCC----CcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh
Confidence 5789999999888752 2234677899999999999999999876432 3344455555554
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.69 E-value=5.1e-08 Score=88.23 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=89.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..+||-||.|.|..+..+++..|..++++||+.+...+.+++. .-++++++.+|+...+.. .+..+|
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~~yD 164 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----FKNEFD 164 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG----CSSCEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc----CCCCCC
Confidence 45799999999999999999887788999999866555444321 235799999999998653 467899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~~ 255 (311)
+|++..+||+.. .-.++.+.+|++.+++.|+|||.+.+.+.+. .....+.+.+.+.
T Consensus 165 vIi~D~~dp~~~---~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v 224 (295)
T d1inla_ 165 VIIIDSTDPTAG---QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV 224 (295)
T ss_dssp EEEEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCcC---chhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh
Confidence 999999888521 1124667899999999999999999987653 3344455555554
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.60 E-value=6.1e-08 Score=85.34 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=70.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
...+|||||||+|.++..+++++|+.+++..|+-... + .....++++++.+|..+- + + ..|.+++...-
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi-~--~~~~~~ri~~~~gd~~~~----~--p--~~D~~~l~~vL 149 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVI-E--NAPPLSGIEHVGGDMFAS----V--P--QGDAMILKAVC 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHH-T--TCCCCTTEEEEECCTTTC----C--C--CEEEEEEESSG
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhh-h--ccCCCCCeEEecCCcccc----c--c--cceEEEEehhh
Confidence 3578999999999999999999999999999974421 1 122347899999997532 2 2 34888765321
Q ss_pred C-CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 205 P-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P-~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
. |+. -....+|+.+++.|+|||++++..
T Consensus 150 h~~~d-------e~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 150 HNWSD-------EKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp GGSCH-------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhCCH-------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1 110 112488999999999999999853
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.56 E-value=2.4e-07 Score=83.46 Aligned_cols=125 Identities=15% Similarity=0.127 Sum_probs=97.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..+||=||-|.|..+..+.+..|..+++.+|+.+..++.+++. .-++++++.+|+...+.. ..++.+|
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~---~~~~~yD 156 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN---AAEGSYD 156 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT---SCTTCEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhh---ccccCcc
Confidence 45789999999999999999987778999999876555555431 236799999999988643 1356899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhcC
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYG 256 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~g 256 (311)
+|++..+||.- .-.++.+.+|++.+++.|+|||.+.+.+.+ ......+.+.+.+..
T Consensus 157 vIi~D~~dp~~----~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF 216 (290)
T d1xj5a_ 157 AVIVDSSDPIG----PAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIF 216 (290)
T ss_dssp EEEECCCCTTS----GGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCCCC----cchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhc
Confidence 99999888852 224578899999999999999999998654 445556666676653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=2.7e-07 Score=84.74 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=88.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+...+||+-||+|.+++.||++ ..+|+|+|.++. |.++++.++++|+.|+++|+.+.+... ......+|.|++
T Consensus 212 ~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~-~~~~~~~d~vil 288 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ-PWAKNGFDKVLL 288 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS-GGGTTCCSEEEE
T ss_pred CCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh-hhhhccCceEEe
Confidence 4578999999999999999987 468999998554 555566779999999999998864321 113467898866
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
. | |...- .+.++.+.+ ++|.=.+|+++|-..++..+.. |.+.||....+
T Consensus 289 D---P-PR~G~-------~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~-l~~~gy~l~~i 337 (358)
T d1uwva2 289 D---P-ARAGA-------AGVMQQIIK-LEPIRIVYVSCNPATLARDSEA-LLKAGYTIARL 337 (358)
T ss_dssp C---C-CTTCC-------HHHHHHHHH-HCCSEEEEEESCHHHHHHHHHH-HHHTTCEEEEE
T ss_pred C---C-CCccH-------HHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH-HHHCCCeEeEE
Confidence 4 4 22221 245666655 4788899999987777776654 55677765544
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.54 E-value=1.7e-07 Score=85.18 Aligned_cols=123 Identities=13% Similarity=0.079 Sum_probs=87.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..+||-||-|.|..+..+.+..|..+++.+|+.+...+.+++. .-++++++.+|+...+.. .+..+|
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~----~~~~yD 181 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----HKNEFD 181 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----CTTCEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh----CCCCCC
Confidence 45789999999999999999877778999999877666655432 125799999999998653 467899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~~ 255 (311)
+|++..+||.- .-..+.+.+|++.+++.|+|||.++.++.+. +....+.+.+.+.
T Consensus 182 vII~D~~dp~~----~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v 240 (312)
T d2b2ca1 182 VIITDSSDPVG----PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI 240 (312)
T ss_dssp EEEECCC-----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCC----cchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc
Confidence 99999888742 2235777899999999999999999987543 3445556566553
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2e-07 Score=83.79 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=88.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..+||=||-|.|..+..+.+..+..+++.+|+.+...+.+++. .-++++++.+|+...+.. .+..+|
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~----~~~~yD 153 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ----NQDAFD 153 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT----CSSCEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc----CCCCCC
Confidence 45789999999999999999887788999999866555544321 236899999999998653 467899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
+|++..++|.- .-..+.+.+|++.+++.|+|||.+.+.+.+ ......+.+.+.+.
T Consensus 154 vIi~D~~~p~~----~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~ 212 (285)
T d2o07a1 154 VIITDSSDPMG----PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL 212 (285)
T ss_dssp EEEEECC---------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCC----cccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc
Confidence 99999888752 123467789999999999999999997643 23344555566553
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.52 E-value=2.7e-07 Score=82.49 Aligned_cols=123 Identities=10% Similarity=0.104 Sum_probs=94.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..+||-||-|.|..+..+.+..+..+++.+|+.+...+.+++. .-+++.++.+|+...+.. .+..+|
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~----~~~~yD 150 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----SENQYD 150 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----CCSCEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh----cCCCCC
Confidence 45789999999999999999887778999999866555444321 235799999999998653 467899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
+|++..++|.-.. ..+.+++|++.++++|+|||.+...+.+ ......+.+.+.+.
T Consensus 151 vIi~D~~~p~~~~----~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~ 209 (274)
T d1iy9a_ 151 VIMVDSTEPVGPA----VNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI 209 (274)
T ss_dssp EEEESCSSCCSCC----CCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCCcc----hhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh
Confidence 9999988886322 2366789999999999999999998654 33445566666654
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=6.8e-07 Score=76.64 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=76.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH---HHHH-HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH---CRDS-LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~---a~~~-a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...++|||||.|-=++.+|-.+|+.+++.+|-+.+ .++. +++.+++|++++++.++++ . .+.++|.|+.-
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-----~-~~~~fD~V~sR 139 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-----P-SEPPFDGVISR 139 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-----C-CCSCEEEEECS
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhh-----c-cccccceehhh
Confidence 46899999999999999999999999999996432 2333 3456889999999999986 1 35689999865
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
---|. +.+++-+...+++||.+++.-.
T Consensus 140 A~~~~------------~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 140 AFASL------------NDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp CSSSH------------HHHHHHHTTSEEEEEEEEEEES
T ss_pred hhcCH------------HHHHHHHHHhcCCCcEEEEECC
Confidence 22221 5889999999999999998653
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.36 E-value=5.7e-06 Score=69.27 Aligned_cols=161 Identities=13% Similarity=0.054 Sum_probs=105.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc-cCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~-~~~~s~D~V~i~fp 203 (311)
++..++|..||.|.++..+.++ +.+++|+|....|++.++....+++.+++++-.++ ...++ ...+.+|.|.+.+.
T Consensus 18 ~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~-~~~l~~~~~~~vdgIl~DLG 94 (182)
T d1wg8a2 18 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHL-KRHLAALGVERVDGILADLG 94 (182)
T ss_dssp TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGH-HHHHHHTTCSCEEEEEEECS
T ss_pred CCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHH-HHHHHHcCCCccCEEEEEcc
Confidence 5789999999999999999987 56999999999999888776667899999998886 33332 23577999988752
Q ss_pred CCCCCCchhhhhhhH--HHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCCCC
Q 021567 204 NPDFNRPEHRWRMVQ--RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 281 (311)
Q Consensus 204 dP~~k~~h~krRl~~--~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~~ 281 (311)
---+. .+...|-++ ...|+.....|+|||.+.+.+-+..=-..+.+.+++.++..+ ...|
T Consensus 95 vSs~q-ld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k~i-----------------~kK~ 156 (182)
T d1wg8a2 95 VSSFH-LDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVL-----------------TKKP 156 (182)
T ss_dssp CCHHH-HHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSEES-----------------CSSC
T ss_pred CCHHH-hhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccceec-----------------cCCC
Confidence 11000 000011121 457889999999999999887543212234555566544321 1112
Q ss_pred CCCCCHHHHHHHHcCCCeEEEEEEeC
Q 021567 282 FGVRSDWEQHVIDRGAPMYRLMLSKP 307 (311)
Q Consensus 282 ~~~~T~yE~~~~~~G~~i~~~~~~k~ 307 (311)
-.+|+.|.+---+-++-.--.++|+
T Consensus 157 -i~~s~~Ei~~Nprsrsa~lr~~~k~ 181 (182)
T d1wg8a2 157 -LVPSEKEAAQNPRARSAKLRAAEKE 181 (182)
T ss_dssp -BCCCHHHHHHCGGGGGCEEEEEECC
T ss_pred -cCcCHHHHhhCcchHhhhheEEEEe
Confidence 2356777665555555555555553
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.35 E-value=4.3e-07 Score=79.72 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=68.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..+|||||||+|.++..+++++|+.+++..|+-.. ++.+ ...++++++.+|..+- ....|++++...-.
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~--~~~~rv~~~~gD~f~~--------~p~aD~~~l~~vLH 149 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQV-VENL--SGSNNLTYVGGDMFTS--------IPNADAVLLKYILH 149 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH-HTTC--CCBTTEEEEECCTTTC--------CCCCSEEEEESCGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHH-HHhC--cccCceEEEecCcccC--------CCCCcEEEEEeecc
Confidence 46899999999999999999999999999998432 2221 2346899999997542 12358877653211
Q ss_pred -CCCCchhhhhhhHHHHHHHHHhcccCC---eEEEEE
Q 021567 206 -DFNRPEHRWRMVQRSLVEAVSDLLVHD---GKVFLQ 238 (311)
Q Consensus 206 -~~k~~h~krRl~~~~~l~~i~rvLkpG---G~l~~~ 238 (311)
|. + -...++|+.+++.|+|| |++.+.
T Consensus 150 dw~-d------~~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 150 NWT-D------KDCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp GSC-H------HHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred cCC-h------HHHHHHHHHHHHHcCcccCCcEEEEE
Confidence 21 0 11248899999999998 667664
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.34 E-value=2.4e-07 Score=81.15 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=65.8
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe-CCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ-CPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~-fpd 204 (311)
..+|||||||+|.++..+++++|+.++++.|+-... + ......+++++.+|..+- +| .+ |.+++. .-.
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi-~--~~~~~~r~~~~~~d~~~~----~P--~a--d~~~l~~vlh 150 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVI-E--DAPSYPGVEHVGGDMFVS----IP--KA--DAVFMKWICH 150 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTT-T--TCCCCTTEEEEECCTTTC----CC--CC--SCEECSSSST
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhh-h--hcccCCceEEeccccccc----CC--Cc--ceEEEEEEee
Confidence 468999999999999999999999999999973321 1 112236899999997542 23 22 333322 111
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-|+. -....+|+++++.|+|||++.+.
T Consensus 151 ~~~d-------~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 151 DWSD-------EHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp TSCH-------HHHHHHHHHHHHHCCSSSCEEEE
T ss_pred cCCH-------HHHHHHHHHHHHhcCCCceEEEE
Confidence 2211 01248999999999999998875
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.34 E-value=6.8e-07 Score=78.06 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=55.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++..|||||||+|.++..|++. ..++++||+.....+.+++. +.+|+.++++|+..+ +.+......|+.|.
T Consensus 21 ~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~-----~~~~~~~~~vv~NL 93 (235)
T d1qama_ 21 EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQF-----KFPKNQSYKIFGNI 93 (235)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGC-----CCCSSCCCEEEEEC
T ss_pred CCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhc-----cccccccceeeeee
Confidence 5789999999999999999987 46899999987777666543 457999999999886 22333334567886
Q ss_pred C
Q 021567 203 P 203 (311)
Q Consensus 203 p 203 (311)
|
T Consensus 94 P 94 (235)
T d1qama_ 94 P 94 (235)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.23 E-value=2.8e-06 Score=71.00 Aligned_cols=103 Identities=12% Similarity=0.153 Sum_probs=72.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC--cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT--NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+.+|||+.||||.++++.+.+.. ..++.||.+..+.+.++ ..+.. ...+...|+.+.+.. ......||+|+
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~--~~~~~~fDlIF 120 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ--PQNQPHFDVVF 120 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS--CCSSCCEEEEE
T ss_pred cceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccc--cccCCcccEEE
Confidence 57899999999999999999864 48999998776655444 33443 477788888776432 22345799997
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHH--hcccCCeEEEEEeC
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSD 240 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~--rvLkpGG~l~~~tD 240 (311)
+. +|+ ... .....++.+. .+|+++|.+++.++
T Consensus 121 lD--PPY-~~~------~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 121 LD--PPF-HFN------LAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp EC--CCS-SSC------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ec--hhH-hhh------hHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 64 332 221 1245666664 47999999999764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.19 E-value=9.9e-07 Score=74.47 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=63.4
Q ss_pred CCeEEEEeccccHHHHHHH----hh----CCCCeEEEEchHHHHHHHHHHcC--------C-------------------
Q 021567 126 QPLVVDIGSGNGLFLLGMA----RK----RKDLNFLGLELVTHCRDSLQLSG--------I------------------- 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA----~~----~p~~~vvGiDi~~~a~~~a~~~~--------~------------------- 170 (311)
.-+|+++|||||.-...+| +. ..+..++|.|++..++++|+..- .
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 3589999999999543333 22 22457999999998888876310 0
Q ss_pred --------CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 171 --------TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 171 --------~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..+.+...+.... .+...+.+|+|++-..--.+.. -.+.++++.+++.|+|||.|++-
T Consensus 105 ~~~~~~~~~~v~~~~~~~~~~----~~~~~~~fDvI~CRNVLiYf~~------~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 105 VRVRQELANYVEFSSVNLLEK----QYNVPGPFDAIFCRNVMIYFDK------TTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEECHHHHTTEEEEECCTTCS----SCCCCCCEEEEEECSSGGGSCH------HHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eehHHHHHHHHHHhhhhcccc----ccCCCCCccEEEeehhHHhcCH------HHHHHHHHHHHHHhCCCcEEEEe
Confidence 0122222222221 0113578999986533222211 12358999999999999998873
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.17 E-value=1.6e-06 Score=73.28 Aligned_cols=119 Identities=14% Similarity=0.063 Sum_probs=78.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.+|||.|||+|.++..+.++.+ ...++|+|+.+.+... ..+..++++|.... + ....+|.+..+-|
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~-----~~~~~~~~~~~~~~-----~-~~~~fd~ii~npP 87 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL-----PPWAEGILADFLLW-----E-PGEAFDLILGNPP 87 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC-----CTTEEEEESCGGGC-----C-CSSCEEEEEECCC
T ss_pred CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh-----cccceeeeeehhcc-----c-cccccceecccCc
Confidence 567999999999999999987755 4679999987654322 23467778876553 1 3578999988844
Q ss_pred CCCCCCc-----------h------------hhhhhhHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHhcC
Q 021567 204 NPDFNRP-----------E------------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYG 256 (311)
Q Consensus 204 dP~~k~~-----------h------------~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~~g 256 (311)
+.... . ..+.-....|++...+.|+|||++.+.+... .+.+.+.+.+.+..
T Consensus 88 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~ 165 (223)
T d2ih2a1 88 --YGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREG 165 (223)
T ss_dssp --CCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred --cccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcC
Confidence 21100 0 0001123578899999999999998875332 23455566666554
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.15 E-value=1.3e-05 Score=72.53 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=78.8
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||++||.|.=+..+|.. ..+..++++|.+. ...+++++.+..|+.+...|...+ +..+..||.|.
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~-----~~~~~~fD~IL 190 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI-----GELNVEFDKIL 190 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG-----GGGCCCEEEEE
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc-----ccccccccEEE
Confidence 5789999999999999999876 3467899999753 344556677889999999998776 22467899998
Q ss_pred EeCC---------CCCCCCchhhh---hh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCP---------NPDFNRPEHRW---RM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fp---------dP~~k~~h~kr---Rl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-| +|..+...... ++ .+.++|....+.|||||.++-+|
T Consensus 191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT 244 (313)
T d1ixka_ 191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 244 (313)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence 7643 22211111111 21 23789999999999999988776
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.14 E-value=2.2e-06 Score=77.59 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=80.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-----CCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-----RKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-----~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
++..|||.|||+|.+++.+..+ .++.+++|+|+.+.+.+.++ ..+ .+..+.++|.... .....|
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~------~~~~~f 189 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-QKMTLLHQDGLAN------LLVDPV 189 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-CCCEEEESCTTSC------CCCCCE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-hhhhhhccccccc------cccccc
Confidence 4568999999999999998653 34568999998766555443 233 3566777776543 136789
Q ss_pred eEEEEeCCCCCCCCch--h----------hhhhhHHHHHHHHHhcccCCeEEEEEeCcH----HHHHHHHHHHHhcC
Q 021567 196 ILVSIQCPNPDFNRPE--H----------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYG 256 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h--~----------krRl~~~~~l~~i~rvLkpGG~l~~~tD~~----~~~~~~~~~l~~~g 256 (311)
|.|+.|- |+-.... . .+....-.|++.+.+.|+|||++.+.+... ...+.+++.+.+++
T Consensus 190 D~vi~NP--Py~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~ 264 (328)
T d2f8la1 190 DVVISDL--PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG 264 (328)
T ss_dssp EEEEEEC--CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred cccccCC--CCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCC
Confidence 9999993 3311100 0 001123468999999999999988765322 23455666666654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.13 E-value=1.8e-05 Score=69.01 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=86.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHH-HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSL-QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a-~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...++|||+|.|-=++-+|-.+|+.+++.+|-+. ..++.+ ++.+++|+.++++.++++-.. ......||.|+.-
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~--~~~~~~~D~v~sR 148 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR--KDVRESYDIVTAR 148 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC--TTTTTCEEEEEEE
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc--ccccccceEEEEh
Confidence 5689999999999999999999999999999643 233333 456899999999999886221 1124689999876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC--cHHHHHHHHHHHHhcCCCc
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD--~~~~~~~~~~~l~~~g~~~ 259 (311)
-.-|. ..+++.....+++||.+++--. ..+=.+.+.+.+...++..
T Consensus 149 Ava~l------------~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~ 196 (239)
T d1xdza_ 149 AVARL------------SVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL 196 (239)
T ss_dssp CCSCH------------HHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred hhhCH------------HHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEE
Confidence 33231 5899999999999999988532 2222333444556665543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.10 E-value=4.3e-07 Score=79.86 Aligned_cols=73 Identities=16% Similarity=0.098 Sum_probs=56.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+..|||||||+|.++..|+++ ..++++||+..+..+.+++. ..+|++++++|+.++ +.++...+.|+.|.
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~-----~~~~~~~~~vv~NL 101 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF-----QFPNKQRYKIVGNI 101 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT-----TCCCSSEEEEEEEC
T ss_pred CCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhcc-----ccccceeeeEeeee
Confidence 4678999999999999999998 46899999876554444322 346999999999987 33456677788887
Q ss_pred CC
Q 021567 203 PN 204 (311)
Q Consensus 203 pd 204 (311)
|-
T Consensus 102 PY 103 (245)
T d1yuba_ 102 PY 103 (245)
T ss_dssp CS
T ss_pred eh
Confidence 63
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=1.7e-05 Score=70.69 Aligned_cols=111 Identities=11% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..|||+|+|.|.=+..+|....+..++++|++ ....+++++.|.+|+.....|.... . .. .+..||.|.+
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~-~-~~--~~~~fd~IL~ 177 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS-Q-WC--GEQQFDRILL 177 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH-H-HH--TTCCEEEEEE
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccc-h-hc--ccccccEEEE
Confidence 5789999999999999999998778899999974 4566677778888877776665433 1 11 3678999988
Q ss_pred eCC---------CCCCCC---chhhhhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCP---------NPDFNR---PEHRWRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fp---------dP~~k~---~h~krRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.-| +|..+. .....++ ++.++|+...+.|||||.++-+|
T Consensus 178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT 230 (284)
T d1sqga2 178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 230 (284)
T ss_dssp ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 754 222110 0111122 24799999999999999998876
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=3.9e-05 Score=63.80 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=78.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhh--hh-ccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRS--IV-ASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~--~~-~~~~~s~D~V~i 200 (311)
++..||||||+.|.++..++++ .+...++|+|+... ..++++.++++|..+.... .. ......+|+|+.
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlS 94 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-------cccCCceEeecccccchhhhhhhhhccCcceeEEEe
Confidence 4678999999999999999876 55678999997441 3467899999999764211 10 113568999987
Q ss_pred eCCCCCCCCchhh--hhhh--HHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 201 QCPNPDFNRPEHR--WRMV--QRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 201 ~fpdP~~k~~h~k--rRl~--~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
... |........ .+.. ....+.-+.++|++||.|+++.=.-...+..+..+..
T Consensus 95 D~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~ 151 (180)
T d1ej0a_ 95 DMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS 151 (180)
T ss_dssp CCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred ccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence 643 212111111 1111 1455667789999999999975222223344444444
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.78 E-value=4.6e-05 Score=70.50 Aligned_cols=116 Identities=9% Similarity=0.004 Sum_probs=83.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCC---------------cEEEEEccccchhhh
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGIT---------------NGYFIATNATSTFRS 186 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~---------------Nv~f~~~Da~~ll~~ 186 (311)
+.+|||..||||..+++.|...+...|+..|+++.|.+.+++ ++.. ++.+.+.|+..++..
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 468999999999999999988777799999998877766653 3332 367888888776432
Q ss_pred hhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHHHHHH-HHHHHhcCC
Q 021567 187 IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRM-KQQFLEYGK 257 (311)
Q Consensus 187 ~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~~~~~-~~~l~~~g~ 257 (311)
....||.|.+. |.= . . ..||+...+.++.||.+.+. ||...+.... ...+..+|.
T Consensus 126 ----~~~~fDvIDiD---PfG-s--~------~pfldsAi~a~~~~Gll~vTaTD~a~L~G~~~~~~~r~Yg~ 182 (375)
T d2dula1 126 ----RHRYFHFIDLD---PFG-S--P------MEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLA 182 (375)
T ss_dssp ----STTCEEEEEEC---CSS-C--C------HHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSS
T ss_pred ----hcCcCCcccCC---CCC-C--c------HHHHHHHHHHhccCCEEEEEecCchhhcCCCcHHHHHHhCC
Confidence 35679988764 531 1 1 38999999999999999985 6765543222 223445543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.76 E-value=1.9e-05 Score=68.50 Aligned_cols=104 Identities=16% Similarity=0.107 Sum_probs=64.6
Q ss_pred CCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||||++.|..++.+|.. .++.+++|+|+....... .....+|+.++++|..+.. ..-......+|.|++-
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-~~~~~~~I~~i~gDs~~~~-~~~~l~~~~~dlIfID 158 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-PASDMENITLHQGDCSDLT-TFEHLREMAHPLIFID 158 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-CGGGCTTEEEEECCSSCSG-GGGGGSSSCSSEEEEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-hhccccceeeeecccccHH-HHHHHHhcCCCEEEEc
Confidence 468999999999998877643 468899999974321111 1223478999999986541 1101134456777765
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
+. |+. ..+...+ .+...|+|||.+++. |.-
T Consensus 159 --~~-----H~~-~~v~~~~--~~~~lLk~GG~iIve-D~i 188 (232)
T d2bm8a1 159 --NA-----HAN-TFNIMKW--AVDHLLEEGDYFIIE-DMI 188 (232)
T ss_dssp --SS-----CSS-HHHHHHH--HHHHTCCTTCEEEEC-SCH
T ss_pred --CC-----cch-HHHHHHH--HHhcccCcCCEEEEE-cCC
Confidence 11 221 1111222 356899999999884 543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=1.3e-05 Score=70.39 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=55.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC--CCcEEEEEccccchhhh-hhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATSTFRS-IVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~--~~Nv~f~~~Da~~ll~~-~~~~~~~s~D~V~i~ 201 (311)
++..|||||||+|.++..|+++ ..++++||+.....+.++... .+|+.++.+|+..+-.. ..+..... -.|+-|
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~~~~~~-~~vvgN 97 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQP-LRVFGN 97 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSC-EEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccccccCCC-eEEEec
Confidence 4678999999999999999987 468999999888877776532 36899999999975211 11101223 356677
Q ss_pred CC
Q 021567 202 CP 203 (311)
Q Consensus 202 fp 203 (311)
.|
T Consensus 98 lP 99 (252)
T d1qyra_ 98 LP 99 (252)
T ss_dssp CC
T ss_pred ch
Confidence 65
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00015 Score=64.66 Aligned_cols=112 Identities=8% Similarity=0.018 Sum_probs=74.8
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+..|||+++|.|.-+..+|.. .+...++++|++ ....+++++.|.+|+.+...|...+... .+ ..+.||.|.
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~-~~-~~~~fD~VL 171 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS-DP-RYHEVHYIL 171 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT-CG-GGTTEEEEE
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccc-cc-ccceeeEEe
Confidence 4788999999999999999876 557789999985 3455666778999999999998876211 10 135799998
Q ss_pred EeCC---------CCCCCCc---hh--hhhhh--HHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCP---------NPDFNRP---EH--RWRMV--QRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fp---------dP~~k~~---h~--krRl~--~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-| +|..+.. .. ..++. +..++.... .|+|||.++-+|
T Consensus 172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsT 226 (293)
T d2b9ea1 172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYST 226 (293)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEE
T ss_pred ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEee
Confidence 7644 2221111 11 11222 356676666 479999887765
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00049 Score=60.87 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=52.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----C-CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----G-ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||||+|+|.++..|+++. .++++||+.+...+.+++. . ..|+.++.+|+... + ......|+
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~-----~--~~~~~~vV 91 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-----D--LPFFDTCV 91 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-----C--CCCCSEEE
T ss_pred CCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh-----h--hhhhhhhh
Confidence 46789999999999999999984 5899999877766655432 2 26899999999876 1 11234677
Q ss_pred EeCC
Q 021567 200 IQCP 203 (311)
Q Consensus 200 i~fp 203 (311)
.|.|
T Consensus 92 ~NLP 95 (278)
T d1zq9a1 92 ANLP 95 (278)
T ss_dssp EECC
T ss_pred cchH
Confidence 7855
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.30 E-value=0.00022 Score=66.47 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=76.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-------------CCeEEEEchHHHHHHHHH----HcCC--CcEEEEEccccchhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-------------DLNFLGLELVTHCRDSLQ----LSGI--TNGYFIATNATSTFR 185 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-------------~~~vvGiDi~~~a~~~a~----~~~~--~Nv~f~~~Da~~ll~ 185 (311)
.+.+|+|-+||+|.+++.+.++.. +.++.|+|+...+...++ -++. .+..+..+|....
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~-- 239 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK-- 239 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS--
T ss_pred ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh--
Confidence 467899999999999998876521 235999997654433332 2343 3455667776543
Q ss_pred hhhccCCCcEeEEEEeCCCCCCCCch-----------hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH-----HHHHH
Q 021567 186 SIVASYPGKLILVSIQCPNPDFNRPE-----------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----MLRMK 249 (311)
Q Consensus 186 ~~~~~~~~s~D~V~i~fpdP~~k~~h-----------~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~-----~~~~~ 249 (311)
.....+|.|..|-| +-.... .+.+-..-.|+..+.+.|++||++.+.+....+ ...++
T Consensus 240 ----~~~~~fD~Ii~NPP--fg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR 313 (425)
T d2okca1 240 ----EPSTLVDVILANPP--FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIR 313 (425)
T ss_dssp ----CCSSCEEEEEECCC--SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHH
T ss_pred ----hcccccceEEecCC--CCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHH
Confidence 14678999998833 311100 001112357999999999999998887543222 23455
Q ss_pred HHHHhc
Q 021567 250 QQFLEY 255 (311)
Q Consensus 250 ~~l~~~ 255 (311)
+.+.+.
T Consensus 314 ~~Ll~~ 319 (425)
T d2okca1 314 KRLLQD 319 (425)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.06 E-value=0.00012 Score=63.75 Aligned_cols=107 Identities=13% Similarity=0.064 Sum_probs=62.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH-H-H-HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR-D-S-LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~-~-~-a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
....|+|+|||.|.++..+|.+.+...+.|+++-.... . . .+..+..-+.+...+... ..++..+|.|...
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~------~l~~~~~D~vlcD 139 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVF------FIPPERCDTLLCD 139 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTT------TSCCCCCSEEEEC
T ss_pred CCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHH------hcCCCcCCEEEee
Confidence 35689999999999999999887666788888611000 0 0 000111113443333211 1246789999876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
....-+...-...|. -++++-+.+.|+|||.|.++.
T Consensus 140 m~ess~~~~vd~~Rt--l~vLela~~wLk~gg~FvvKV 175 (257)
T d2p41a1 140 IGESSPNPTVEAGRT--LRVLNLVENWLSNNTQFCVKV 175 (257)
T ss_dssp CCCCCSSHHHHHHHH--HHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCCCCchhhhhhH--HHHHHHHHHHcccCCEEEEEE
Confidence 521111111111122 367888899999999999875
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.70 E-value=0.003 Score=54.71 Aligned_cols=70 Identities=16% Similarity=0.066 Sum_probs=54.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEch-------HHHHHHHHHHcC------CCcEEEEEccccchhhhhhccCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQLSG------ITNGYFIATNATSTFRSIVASYP 192 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi-------~~~a~~~a~~~~------~~Nv~f~~~Da~~ll~~~~~~~~ 192 (311)
.++|||.-||.|.-++.+|.. +.+|+++|. .+.+++++.... ..|++++++|+.+++.. ..
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~----~~ 162 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----IT 162 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT----CS
T ss_pred CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc----cC
Confidence 468999999999999999988 578999993 355666665432 24899999999988643 35
Q ss_pred CcEeEEEEe
Q 021567 193 GKLILVSIQ 201 (311)
Q Consensus 193 ~s~D~V~i~ 201 (311)
..+|+||+-
T Consensus 163 ~~~DvIYlD 171 (250)
T d2oyra1 163 PRPQVVYLD 171 (250)
T ss_dssp SCCSEEEEC
T ss_pred CCCCEEEEC
Confidence 679999874
|
| >d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.68 E-value=0.00072 Score=63.01 Aligned_cols=98 Identities=24% Similarity=0.386 Sum_probs=71.2
Q ss_pred eeeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHHhhccchhhh
Q 021567 9 LSILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGL 83 (311)
Q Consensus 9 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~ 83 (311)
..|+--|| +++++.++|.|+|-||.-+-=.++++.|...|+.+++.++..+|--++.|.-.++++.....+..++
T Consensus 312 ~~i~DIGp~Ti~~~~~~I~~aktI~WNGP~GvfE~~~F~~GT~~l~~~i~~~t~~~~~sivGGGdT~aai~~~g~~~~~~ 391 (417)
T d1ltka_ 312 WMGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEIS 391 (417)
T ss_dssp CEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECCSTTHHHHHHHTCGGGSS
T ss_pred ceeeeccchhhhHHHHHhccCCEEEEECCcccccccchhHHHHHHHHHHHHHhhCCCEEEEeCHHHHHHHHhcCCccCCe
Confidence 34555666 5688999999999999997777899999999999999998777755555555555665543333333
Q ss_pred hhhhhhhhhhhhhhhccCCCchh
Q 021567 84 NMVESGSAVWEFLKGRMLPGVSA 106 (311)
Q Consensus 84 ~~fe~~a~~wd~~~~r~~~~~~~ 106 (311)
-...+...+++++.|+..|+.++
T Consensus 392 hvSTGGGA~Le~L~G~~LPgiea 414 (417)
T d1ltka_ 392 HVSTGGGASLELLEGKELPGVLA 414 (417)
T ss_dssp EECCCSHHHHHHHTTCCCHHHHT
T ss_pred EEEcCHHHHHHHHCCCCCcceec
Confidence 23445678888888888777643
|
| >d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.58 E-value=0.00093 Score=62.19 Aligned_cols=100 Identities=25% Similarity=0.419 Sum_probs=68.5
Q ss_pred ceeeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHHhhccchhh
Q 021567 8 NLSILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFG 82 (311)
Q Consensus 8 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~ 82 (311)
+-.|+--|| ++.++.++|.|+|-||.-+--.++++.|...|++.++..++.+|--++.|.-.++++....-+..+
T Consensus 306 ~~~i~DIG~~Ti~~~~~~I~~aktI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~a~sivGGGdT~aai~~~g~~~~~ 385 (413)
T d1hdia_ 306 GWMGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDNV 385 (413)
T ss_dssp TCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECTTHHHHHHHHTTCTTTS
T ss_pred CceeecccchhhHHHHHHhccCCEEEEECCcccccCcchhHHHHHHHHHHHHhhcCCCEEEEeCHHHHHHHHHcCCcCCC
Confidence 334555566 567999999999999999888899999999999999999887765444433333334333222222
Q ss_pred hhhhhhhhhhhhhhhhccCCCchhh
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~~l 107 (311)
.-...+.....+++.|+..|+.+++
T Consensus 386 ~hvSTGGGA~L~~L~G~~LPgi~aL 410 (413)
T d1hdia_ 386 SHVSTGGGASLELLEGKVLPGVDAL 410 (413)
T ss_dssp SEECSCHHHHHHHHTTCCCHHHHTS
T ss_pred cEEeCCHHHHHHHHCCCCcchhhhh
Confidence 2233446777888888888776443
|
| >d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=96.52 E-value=0.001 Score=61.65 Aligned_cols=98 Identities=26% Similarity=0.443 Sum_probs=68.4
Q ss_pred eeeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCcee-EEEcchhhHHHHHhhccchhh
Q 021567 9 LSILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCN-VTVIGSMACKAIAKVSSSIFG 82 (311)
Q Consensus 9 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~s~~~ 82 (311)
..|+--|| ++.++.++|.|+|-||.-+--.++++.|..+|+..++.++..++- +...|++++ ++....-. ..
T Consensus 290 ~~ilDIG~~Ti~~~~~~I~~aktI~WNGP~G~fE~~~F~~GT~~l~~~ia~~t~~~~~sIiGGGdT~a-ai~~~g~~-~~ 367 (398)
T d1vpea_ 290 WMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAA-AVNKFGLE-DK 367 (398)
T ss_dssp CEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHH-HHHHTTCG-GG
T ss_pred ceeeccccchHHHHHHHhccCcEEEEEcccccccccchhHHHHHHHHHHHHHhcCCCEEEEeCHHHHH-HHHHcCCc-CC
Confidence 34555566 578899999999999999966789999999999999999887774 333344444 33322211 11
Q ss_pred hhhhh-hhhhhhhhhhhccCCCchhhh
Q 021567 83 LNMVE-SGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 83 ~~~fe-~~a~~wd~~~~r~~~~~~~l~ 108 (311)
.++.. +...+.+++.|+..|+.+++.
T Consensus 368 f~hvSTGGGA~Le~L~G~~LPgi~aL~ 394 (398)
T d1vpea_ 368 FSHVSTGGGASLEFLEGKELPGIASMR 394 (398)
T ss_dssp SSEEESCHHHHHHHHTSSCCHHHHTSC
T ss_pred ceEEeCCHHHHHHHHCCCCChHHHHHh
Confidence 22333 467788999998888875444
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.39 E-value=0.0074 Score=48.85 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~fp 203 (311)
+..||=+|||. |..+..+|+..--.+++++|.++.-++.+++.|.+. ++..+-.+..+..... ...-+|.|+-.-.
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~--~i~~~~~~~~~~v~~~t~g~G~D~vid~~g 105 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD--ILNYKNGHIEDQVMKLTNGKGVDRVIMAGG 105 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE--EECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc--cccccchhHHHHHHHHhhccCcceEEEccC
Confidence 55677799998 888999998764457999999888788888777543 3322222222211111 2234898865533
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+ ..+++..+.|+|+|.+.+.
T Consensus 106 ~~--------------~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 106 GS--------------ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp CT--------------THHHHHHHHEEEEEEEEEC
T ss_pred CH--------------HHHHHHHHHHhcCCEEEEE
Confidence 33 5678888999999999884
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.25 E-value=0.0038 Score=55.91 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=47.1
Q ss_pred CCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-CCCcEEEEEccccch
Q 021567 124 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATST 183 (311)
Q Consensus 124 ~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~~~Nv~f~~~Da~~l 183 (311)
+++..|||||+|.|.++..|.+.....++++||..+...+.+++. ..+|+.++++|+..+
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 102 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhhc
Confidence 356789999999999999998874335899999877666666543 236899999999865
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.0065 Score=49.19 Aligned_cols=100 Identities=18% Similarity=0.073 Sum_probs=64.4
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEE-EEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYF-IATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f-~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
++..||=+|||. |.++..+|+..--.+|+++|.++.-++.+++.|.+.+-- -..|..+........ ...-+|.|+-.
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~ 107 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA 107 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeec
Confidence 367899999985 788889998864348999999888888888777543211 112222221111111 23458887644
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-..| ..++...+.|+|||++.+.
T Consensus 108 vG~~--------------~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 108 TGDS--------------RALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp SSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred CCch--------------hHHHHHHHHhcCCCEEEEE
Confidence 3332 4578888999999999764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.98 E-value=0.01 Score=49.02 Aligned_cols=110 Identities=11% Similarity=-0.011 Sum_probs=68.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh---hhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF---RSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll---~~~~~~~~~s~D~V~i 200 (311)
++..||-+|||. |..+..+|+......++++|.++.-++.+++.|.+. .+...-.++. .+.. ...-+|.++-
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~--~~~~~~~~~~~~i~~~t--~g~g~D~vid 100 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEI--ADLSLDTPLHEQIAALL--GEPEVDCAVD 100 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEE--EETTSSSCHHHHHHHHH--SSSCEEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccE--EEeCCCcCHHHHHHHHh--CCCCcEEEEE
Confidence 467899999998 667888888776779999999888888888877542 2221112221 2222 2445788764
Q ss_pred eCCCCCCCCchhh-hhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHR-WRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~k-rRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
....+-.-..+.. ......+.++...++++|||++.+.
T Consensus 101 ~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 101 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 3221100000110 0011247899999999999999875
|
| >d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.85 E-value=0.0024 Score=59.28 Aligned_cols=97 Identities=26% Similarity=0.432 Sum_probs=65.7
Q ss_pred eeeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcc--hhhHHHHHhhccchh
Q 021567 9 LSILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG--SMACKAIAKVSSSIF 81 (311)
Q Consensus 9 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~s~~ 81 (311)
..|+--|| ++.++.++|.|+|-||.-+-=.++++.|..+|+..++.++..+...+++| +++++. ....-. .
T Consensus 308 ~~i~DIG~~Ti~~~~~~I~~AktI~wNGP~GvfE~~~F~~GT~~l~~~ia~~t~~~~~~sivGGGdT~aai-~~~g~~-~ 385 (415)
T d16pka_ 308 HMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAA-ELSGEA-K 385 (415)
T ss_dssp CEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHH-HHTTCT-T
T ss_pred hHHHHHHHHhhhHHhHhhhhhceEEEecceeeeeccchhHHHHHHHHHHHHhhccCCCEEEECCHHHHHHH-HHcCCc-c
Confidence 34555565 45789999999999999986667999999999999999886555555554 444433 222111 1
Q ss_pred hhhhh-hhhhhhhhhhhhccCCCchhh
Q 021567 82 GLNMV-ESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 82 ~~~~f-e~~a~~wd~~~~r~~~~~~~l 107 (311)
..+|. .+...+.+++.|+..|+.+++
T Consensus 386 ~~~hvSTGGGA~L~~L~G~~LPgi~aL 412 (415)
T d16pka_ 386 RMSHVSTGGGASLELLEGKTLPGVTVL 412 (415)
T ss_dssp TSSEECSCHHHHHHHHTTCCCHHHHTS
T ss_pred CCcEEECCHHHHHHHHCCCCcchHHHh
Confidence 12222 335678888888888876443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.81 E-value=0.019 Score=45.57 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=63.1
Q ss_pred CCCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccc---hhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATS---TFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~---ll~~~~~~~~~s~D~V~i 200 (311)
.+.+||=+||| .|.++.++|+.. +.+++++|.++.-++.+++.+.+..........+ ....+-.....-+|.++-
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid 104 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID 104 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred CCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence 45678889998 577777778765 5799999998888888877775433222211111 111110111345676643
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+... +..++...+.|+|+|++.+.
T Consensus 105 -~~g~-------------~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 105 -CSGN-------------EKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp -CSCC-------------HHHHHHHHHHSCTTCEEEEC
T ss_pred -cCCC-------------hHHHHHHHHHHhcCCceEEE
Confidence 3221 36788889999999999975
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.80 E-value=0.022 Score=45.60 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=66.1
Q ss_pred CCCeEEEEecccc-HHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNG-LFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG-~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++..||=+|||.- ..+..+|+......++.+|.++.-++.+++.|.+. ++..+-.+.........++.+|.|+-.-.
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~--~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH--VINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE--EEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE--EEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 4667888999854 45667777766668889999888788888777653 34333333322221113567898865422
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. +..++...+.++|+|++.+.
T Consensus 106 ~--------------~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 106 S--------------PEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp C--------------HHHHHHHHHTEEEEEEEEEC
T ss_pred c--------------HHHHHHHHhcccCceEEEEE
Confidence 2 37788999999999999884
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.014 Score=55.43 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=71.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhC----C--------------CCeEEEEchHHHHHHHHH----HcCCC-c----EEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR----K--------------DLNFLGLELVTHCRDSLQ----LSGIT-N----GYFIA 177 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~----p--------------~~~vvGiDi~~~a~~~a~----~~~~~-N----v~f~~ 177 (311)
.+.+|+|-+||+|.|++...+.. . ...++|+|+...+.+.++ -++.. + -.+..
T Consensus 164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~ 243 (524)
T d2ar0a1 164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 243 (524)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence 46789999999999998876531 1 126899998655444332 22321 1 12333
Q ss_pred ccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh--------hhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH-----
Q 021567 178 TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH--------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV----- 244 (311)
Q Consensus 178 ~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~--------krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~----- 244 (311)
++.... ... ....||.|..| +|+-..... ...-..-.|+..+.+.|+|||++.+.+..-.+
T Consensus 244 ~~~l~~--d~~--~~~kfD~Ii~N--PPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~ 317 (524)
T d2ar0a1 244 GNTLGS--DGE--NLPKAHIVATN--PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK 317 (524)
T ss_dssp SCTTSH--HHH--TSCCEEEEEEC--CCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTH
T ss_pred hhhhhh--ccc--ccccceeEEec--CCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhh
Confidence 333221 111 34679999988 333211100 00111246999999999999999887643222
Q ss_pred HHHHHHHHHhc
Q 021567 245 MLRMKQQFLEY 255 (311)
Q Consensus 245 ~~~~~~~l~~~ 255 (311)
...+++.+.+.
T Consensus 318 ~~~iR~~Ll~~ 328 (524)
T d2ar0a1 318 GTDIRRDLMDK 328 (524)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHc
Confidence 23455555544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.0025 Score=51.21 Aligned_cols=96 Identities=9% Similarity=0.005 Sum_probs=62.1
Q ss_pred CCCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++..||-+|+| .|.++..+|+.. +.+++++|.++.-++.+++.|.+.+- -..+-.+.... ..+.+|.++....
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i-~~~~~~~~~~~----~~~~~d~vi~~~~ 100 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYI-ATLEEGDWGEK----YFDTFDLIVVCAS 100 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEE-EGGGTSCHHHH----SCSCEEEEEECCS
T ss_pred CCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEe-eccchHHHHHh----hhcccceEEEEec
Confidence 46788889998 777888888765 68999999887777777777765321 11221222111 2467898865433
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+.. .-++...+.|+|+|++.+.
T Consensus 101 ~~~~------------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 101 SLTD------------IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp CSTT------------CCTTTGGGGEEEEEEEEEC
T ss_pred CCcc------------chHHHHHHHhhccceEEEe
Confidence 2210 1134567889999999875
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.027 Score=44.88 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=64.5
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc-cCCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~-~~~~s~D~V~i~ 201 (311)
++.+||=+|+ |.|..++++|+.. +.++++++-+++..+.+++.|.+.+ +...-.++.+.... .....+|.|+-.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~v--i~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEV--FNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEE--EETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccc--cccccccHHHHhhhhhccCCceEEeec
Confidence 4678999996 6788889999876 6799999987777777777776543 22211222121111 135568877643
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ....++...++|+|+|+++..
T Consensus 105 -~--------------g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 105 -L--------------ANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp -C--------------HHHHHHHHHHHEEEEEEEEEC
T ss_pred -c--------------cHHHHHHHHhccCCCCEEEEE
Confidence 1 135688888999999999874
|
| >d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.07 E-value=0.0086 Score=55.45 Aligned_cols=97 Identities=25% Similarity=0.389 Sum_probs=66.9
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcC-ceeEEEcchhhHHHHH-hhccchhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQG-TCNVTVIGSMACKAIA-KVSSSIFG 82 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~s~~~ 82 (311)
.|+--|| ++.++.++|.|+|-||.-+-=.+++..|...|+..++..... ...+...|+++++.-. +..+ ...
T Consensus 309 ~i~DIG~~Ti~~~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~~~sivGGGdT~aai~~~g~~~-~~~ 387 (415)
T d1qpga_ 309 QGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTD-KIS 387 (415)
T ss_dssp EEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHTCEEEECCHHHHHHHHHTTCGG-GSS
T ss_pred cccccchhhHHHHHHHhccCcEEEEECCcccccccchhhHHHHHHHHHHHhccCCCeEEEeCHHHHHHHHHcCCcc-CCc
Confidence 3444565 567899999999999998554578999999999998886654 3556666777665543 2211 111
Q ss_pred hhhhhhhhhhhhhhhhccCCCchhhh
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~~l~ 108 (311)
| ...+....++++.|+..|+.+++.
T Consensus 388 h-vSTGGGA~L~~L~G~~LPgi~aL~ 412 (415)
T d1qpga_ 388 H-VSTGGGASLELLEGKELPGVAFLS 412 (415)
T ss_dssp E-ECCCTHHHHHHHTSCCCHHHHTSC
T ss_pred e-EeCCHHHHHHHHCCCCCcHHHHHh
Confidence 2 334467788999888888875443
|
| >d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.06 E-value=0.0085 Score=55.11 Aligned_cols=94 Identities=27% Similarity=0.493 Sum_probs=66.2
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchhhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIFGL 83 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~~~ 83 (311)
.|+--|| ++.++.++|.|+|-||.-+-=.++++.|..+|+..++..+ ....+...|++++++-. +..+ ..
T Consensus 291 ~ilDIG~~Ti~~~~~~I~~aktI~WNGPmG~fE~~~F~~GT~~l~~~ia~~~-~a~sivGGGdT~aai~~~g~~~---~~ 366 (394)
T d1phpa_ 291 SALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEAL-DTYSVIGGGDSAAAVEKFGLAD---KM 366 (394)
T ss_dssp EEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHCT-TCEEEECSHHHHHHHHHTTCGG---GS
T ss_pred cccccCchHHHHHHHHHhhhceEEEecceeeeeccchhHHHHHHHHHHHhcC-CCeEEEeCHHHHHHHHHcCCcC---CC
Confidence 4444455 4688999999999999998666899999999999997643 34677777777776543 2211 12
Q ss_pred hhh-hhhhhhhhhhhhccCCCchhh
Q 021567 84 NMV-ESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 84 ~~f-e~~a~~wd~~~~r~~~~~~~l 107 (311)
++. .+.....+++.|+..|+.+++
T Consensus 367 shvSTGGGA~Le~L~G~~LPgi~aL 391 (394)
T d1phpa_ 367 DHISTGGGASLEFMEGKQLPGVVAL 391 (394)
T ss_dssp SEECSCTHHHHHHHTTCCCHHHHTS
T ss_pred cEEecCHHHHHHHHCCCCCchHHHh
Confidence 222 335777888888888876444
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.44 E-value=0.034 Score=44.81 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=66.0
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEE-Ecc--ccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFI-ATN--ATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~-~~D--a~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||=+|||. |.+++.+|+..-...++.+|.++.-++.+++.|.+.+.-. ..| ....... . ..+-+|.++-
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~-~--~~~G~d~vie 104 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITE-L--TAGGVDYSLD 104 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH-H--HTSCBSEEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhh-h--hcCCCcEEEE
Confidence 467788899998 8889999998765689999998877788888876543211 111 1111111 1 2456788754
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
.-.. +..+++..+.|+|| |++.+.
T Consensus 105 ~~G~--------------~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 105 CAGT--------------AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp SSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred eccc--------------chHHHHHHHHhhcCCeEEEec
Confidence 4222 37789999999996 999884
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.1 Score=41.17 Aligned_cols=100 Identities=13% Similarity=-0.010 Sum_probs=63.2
Q ss_pred CCCeEEEEeccccH-HHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEcc-ccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGL-FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN-ATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~-~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~D-a~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++..||=+|||... ++..+|+.....+++++|..+.-++.+++.|.+.+.....+ ..+.....-......+|.++-.-
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence 35678889997644 45666666544589999999888888888776543332221 11111110000134577765442
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. +..++...+.+++||++.+.
T Consensus 106 G~--------------~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 106 GA--------------EASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp CC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred CC--------------chhHHHHHHHhcCCCEEEEE
Confidence 22 36788999999999999885
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.05 E-value=0.077 Score=40.05 Aligned_cols=100 Identities=10% Similarity=0.037 Sum_probs=68.2
Q ss_pred ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhh
Q 021567 134 SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR 213 (311)
Q Consensus 134 cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~k 213 (311)
||.|.++..+++...+..++.+|..+...+.+... ++.++.||+.+- ..+....-...+.+.+..+|+-
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~---~~~~i~Gd~~~~-~~L~~a~i~~A~~vi~~~~~d~------- 74 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS---GANFVHGDPTRV-SDLEKANVRGARAVIVNLESDS------- 74 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT---TCEEEESCTTSH-HHHHHTTCTTCSEEEECCSSHH-------
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc---CccccccccCCH-HHHHHhhhhcCcEEEEeccchh-------
Confidence 78899999999987777889999866555555444 568999998764 2221112345677777655431
Q ss_pred hhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHH
Q 021567 214 WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM 248 (311)
Q Consensus 214 rRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~ 248 (311)
...++-...|.+.|...++..+++..+.+.+
T Consensus 75 ----~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l 105 (129)
T d2fy8a1 75 ----ETIHCILGIRKIDESVRIIAEAERYENIEQL 105 (129)
T ss_dssp ----HHHHHHHHHHHHCSSSCEEEECSSGGGHHHH
T ss_pred ----hhHHHHHHHHHHCCCceEEEEEcCHHHHHHH
Confidence 1244556677889999999888877655543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.84 E-value=0.081 Score=41.66 Aligned_cols=98 Identities=12% Similarity=0.187 Sum_probs=65.9
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
++..||=+|| |.|..++.+++......++++|.++.-++.+++.|.+. ++..+-.+..+..... ....+|.++-.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~--~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY--VINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE--EEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce--eeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 4678999997 36666777888765679999999888788887777653 3333333332222111 34568877643
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.. +..++...+.|+|||++.+.
T Consensus 105 ~g~--------------~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 105 NNS--------------EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp CCC--------------HHHHTTGGGGEEEEEEEEEC
T ss_pred ccc--------------chHHHhhhhhcccCCEEEEe
Confidence 221 36678888999999999875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.39 E-value=0.12 Score=40.89 Aligned_cols=97 Identities=9% Similarity=0.095 Sum_probs=63.5
Q ss_pred CCCeEEEEeccccHH-HHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLF-LLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~-~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~f 202 (311)
++..||=+|||.... +..+|+..-...++++|..+.-++.+++.+.+. ++..+-... ...... ...-+|.++-..
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~--~i~~~~~~~-~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH--VVDARRDPV-KQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE--EEETTSCHH-HHHHHHTTTCCEEEEEESS
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce--eecCcccHH-HHHHHhhCCCCceEEEEec
Confidence 357788899986555 467777665678999999887777777776543 333332221 111111 234588776543
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...++...+.|++||++.+.
T Consensus 109 g~--------------~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 109 GS--------------QATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp CC--------------HHHHHHGGGGEEEEEEEEEC
T ss_pred Cc--------------chHHHHHHHHHhCCCEEEEE
Confidence 22 36788899999999999974
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.38 E-value=0.09 Score=43.64 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=51.7
Q ss_pred EEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCc--------hhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 174 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP--------EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 174 ~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~--------h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
.+.++|..+++.. + +++++|+|+.. .|..-.. +...--.....++++.|+|+|||.+++..+.. ..
T Consensus 6 ~i~~gDcle~l~~-l--pd~sVdliitd--PPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~-~~ 79 (256)
T d1g60a_ 6 KIHQMNCFDFLDQ-V--ENKSVQLAVID--PPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF-NC 79 (256)
T ss_dssp SEEECCHHHHHHH-S--CTTCEEEEEEC--CCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH-HH
T ss_pred EEEeccHHHHHhh-C--cCCCcCEEEEC--CCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCch-hh
Confidence 4789999998764 4 58999999876 2321111 00000112467889999999999998766544 33
Q ss_pred HHHHHHHHhcCCCc
Q 021567 246 LRMKQQFLEYGKGK 259 (311)
Q Consensus 246 ~~~~~~l~~~g~~~ 259 (311)
..+.+.+.+.|+..
T Consensus 80 ~~~~~~~~~~g~~~ 93 (256)
T d1g60a_ 80 AFICQYLVSKGMIF 93 (256)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred hhhhhhhhccccee
Confidence 45566677777643
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.17 E-value=0.12 Score=43.47 Aligned_cols=82 Identities=6% Similarity=0.007 Sum_probs=51.2
Q ss_pred EEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhh-----hHHHHHHHHHhcccCCeEEEEEeCcH-----
Q 021567 173 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRM-----VQRSLVEAVSDLLVHDGKVFLQSDIE----- 242 (311)
Q Consensus 173 v~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl-----~~~~~l~~i~rvLkpGG~l~~~tD~~----- 242 (311)
=.|+.+|..+.+.. + ++++||+|+.. .|........... .....++++.|+|||||.+++..+..
T Consensus 5 ~~~~~~D~le~l~~-l--~d~SIDliitD--PPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~ 79 (279)
T d1eg2a_ 5 HVYDVCDCLDTLAK-L--PDDSVQLIICD--PPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEA 79 (279)
T ss_dssp EEEEECCHHHHHHT-S--CTTCEEEEEEC--CCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCT
T ss_pred ceEEechHHHHHhh-C--cCCCccEEEEC--CCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccc
Confidence 35788999998764 3 58999999875 2321111110000 12577889999999999999854321
Q ss_pred ---HHHHHHHHHHHhcCCCc
Q 021567 243 ---EVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 243 ---~~~~~~~~~l~~~g~~~ 259 (311)
.....+...+...++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (279)
T d1eg2a_ 80 GSGDLISIISHMRQNSKMLL 99 (279)
T ss_dssp TBCCHHHHHHHHHHHCCCEE
T ss_pred cccchhhHHHHHHhccCcee
Confidence 23444555566666543
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.41 E-value=0.35 Score=38.33 Aligned_cols=111 Identities=8% Similarity=0.012 Sum_probs=64.5
Q ss_pred eEEEEeccc-cHHHHHHHhhCCCCeEEEE-chHH-HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 128 LVVDIGSGN-GLFLLGMARKRKDLNFLGL-ELVT-HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 128 ~vLDIGcGt-G~~~~~lA~~~p~~~vvGi-Di~~-~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.=||||. |..-.......++..++|+ |..+ .+.+.+++.+.+.-.-...|..+++. +..+|.|++.-|+
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~------~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLE------DPEIDALYVPLPT 76 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHH------CTTCCEEEECCCG
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhh------ccccceeeecccc
Confidence 355689985 5554455556788899987 6644 34444455555432224566666532 4578999887443
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE---eCcHHHHHHHHHHHHhcCCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---SDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~---tD~~~~~~~~~~~l~~~g~~ 258 (311)
. .-++.+...|+.|=-+++. +.+..-.+.+.+..++.+..
T Consensus 77 ~--------------~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~ 119 (184)
T d1ydwa1 77 S--------------LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ 119 (184)
T ss_dssp G--------------GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred h--------------hhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence 2 1133345556667666553 22344466677777776543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.26 E-value=0.28 Score=36.67 Aligned_cols=106 Identities=10% Similarity=0.027 Sum_probs=64.7
Q ss_pred ccccHHHHHHHhhC--CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 134 SGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 134 cGtG~~~~~lA~~~--p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
||-|.++..+|+.. .+..|+.+|..+...+.+...+ ...+.+|+.+. ..+-...-...|.+++..++..
T Consensus 6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~---~~~~~gd~~~~-~~l~~a~i~~a~~vi~~~~~~~----- 76 (134)
T d2hmva1 6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA---THAVIANATEE-NELLSLGIRNFEYVIVAIGANI----- 76 (134)
T ss_dssp ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC---SEEEECCTTCT-THHHHHTGGGCSEEEECCCSCH-----
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC---Ccceeeecccc-hhhhccCCccccEEEEEcCchH-----
Confidence 46678888887652 3678999999988888775544 34567888764 1111101245677877776541
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
....+-.+.+.+.|...++..+++..+.+ .+.+.|..
T Consensus 77 ------~~~~~~~~~~~~~~~~~iiar~~~~~~~~----~l~~~Gad 113 (134)
T d2hmva1 77 ------QASTLTTLLLKELDIPNIWVKAQNYYHHK----VLEKIGAD 113 (134)
T ss_dssp ------HHHHHHHHHHHHTTCSEEEEECCSHHHHH----HHHHHTCS
T ss_pred ------HhHHHHHHHHHHcCCCcEEeecccHhHHH----HHHHCCCC
Confidence 12333444455667778888887766533 34555543
|
| >d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.90 E-value=0.081 Score=48.24 Aligned_cols=97 Identities=24% Similarity=0.378 Sum_probs=64.6
Q ss_pred ceeeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHHhhccchhh
Q 021567 8 NLSILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFG 82 (311)
Q Consensus 8 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~ 82 (311)
+..|+--|| +++++.++|.|+|=||.-+-=.++++.|...|+..++..+ ....+...|+++++.- ...-+ ..
T Consensus 286 ~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmGvfE~~~F~~GT~~i~~aia~~~-~a~sIiGGGdT~aai~-~~g~~-~~ 362 (390)
T d1v6sa_ 286 PYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALE-GAFTVVGGGDSVAAVN-RLGLK-ER 362 (390)
T ss_dssp TCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTTSTTTTHHHHHHHHHHHTCS-SCEEEEESHHHHHHHH-TTTCG-GG
T ss_pred hhhhhhhhhhhhHHHHHHhcccceEEEEccccccccCchhHHHHHHHHHHHhcC-CCEEEEeCHHHHHHHH-HcCCc-CC
Confidence 344566676 5689999999999999986666899999999999885321 2345555666665442 22111 22
Q ss_pred hhhhh-hhhhhhhhhhhccCCCchhh
Q 021567 83 LNMVE-SGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 83 ~~~fe-~~a~~wd~~~~r~~~~~~~l 107 (311)
.+|.. +...+.+++.|+..|+.+++
T Consensus 363 fshVSTGGGA~Le~L~G~~LPgi~aL 388 (390)
T d1v6sa_ 363 FGHVSTGGGASLEFLEKGTLPGLEVL 388 (390)
T ss_dssp SSEECCSSSHHHHHHHHSCCHHHHTT
T ss_pred CcEEeCCHHHHHHHHCCCCccchhhh
Confidence 23333 35678888888888876443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.76 E-value=0.5 Score=35.32 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=65.0
Q ss_pred ccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 134 SGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 134 cGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
||.|.++..+|+. ..+..|+.+|..+...+++.... ++.++.+|+.+. ..+-...-...|.+....+++.
T Consensus 6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~--~~~vi~Gd~~~~-~~l~~~~i~~a~~vv~~t~~d~----- 77 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI--DALVINGDCTKI-KTLEDAGIEDADMYIAVTGKEE----- 77 (132)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC--SSEEEESCTTSH-HHHHHTTTTTCSEEEECCSCHH-----
T ss_pred ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh--hhhhccCcccch-hhhhhcChhhhhhhcccCCcHH-----
Confidence 5668998888875 23678999999877766665442 467899999875 2111112345677776655431
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
. .-++..+.+.+.+.-.+.. +.+..+ .+.+.+.|..
T Consensus 78 -----~-N~~~~~~~k~~~~~~iI~~-~~~~~~----~~~l~~~G~d 113 (132)
T d1lssa_ 78 -----V-NLMSSLLAKSYGINKTIAR-ISEIEY----KDVFERLGVD 113 (132)
T ss_dssp -----H-HHHHHHHHHHTTCCCEEEE-CSSTTH----HHHHHHTTCS
T ss_pred -----H-HHHHHHHHHHcCCceEEEE-ecCHHH----HHHHHHCCCC
Confidence 1 2345566777888855544 444444 3345666653
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.39 Score=41.29 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=73.4
Q ss_pred CeEEEEeccccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
-+++|+-||.|.+...|....-+. .+.++|+.+.|.+..+.+ .++..++.+|+.++....++ ...+|+++-.+|-.
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n-~~~~~~~~~di~~~~~~~~~--~~~~Dll~ggpPCq 79 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN-FPHTQLLAKTIEGITLEEFD--RLSFDMILMSPPCQ 79 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-CTTSCEECSCGGGCCHHHHH--HHCCSEEEECCC--
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH-CCCCCcccCchhhCCHhHcC--CCCccEEEeecccc
Confidence 369999999999988886652222 367999988888776544 34567788898877433332 34689999888855
Q ss_pred CCCCchhhhhhhH--HHHHHHHHhc---c--cCCeEEEEE-eC---cHHHHHHHHHHHHhcCCCc
Q 021567 206 DFNRPEHRWRMVQ--RSLVEAVSDL---L--VHDGKVFLQ-SD---IEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 206 ~~k~~h~krRl~~--~~~l~~i~rv---L--kpGG~l~~~-tD---~~~~~~~~~~~l~~~g~~~ 259 (311)
-+.....++...+ ..++-++.++ + +|.- |++. .. ....++.+++.|++.|+..
T Consensus 80 ~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~-~i~ENV~~l~~~~~~~~i~~~l~~~GY~v 143 (343)
T d1g55a_ 80 PFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKY-ILLENVKGFEVSSTRDLLIQTIENCGFQY 143 (343)
T ss_dssp ----------------CHHHHHHHHGGGCSSCCSE-EEEEEETTGGGSHHHHHHHHHHHHTTEEE
T ss_pred cccccccccccccccccccchhhhhHhhhcCCCce-eeeeccCCcccchhhHHHHhhhhcccccc
Confidence 4443221111111 1233333333 3 5764 4443 11 1234677888899988754
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.20 E-value=0.18 Score=42.90 Aligned_cols=81 Identities=17% Similarity=0.092 Sum_probs=51.8
Q ss_pred cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCC-------c-hhhhhhhHHHHHHHHHhcccCCeEEEEEeCc--
Q 021567 172 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-------P-EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-- 241 (311)
Q Consensus 172 Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~-------~-h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-- 241 (311)
+=.++++|..+.+.. + ++++||+|++. .|..-. . |...--.....+++++++|+|+|.+++..+.
T Consensus 12 ~~~l~~GD~le~l~~-l--~~~sVdli~tD--PPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~ 86 (320)
T d1booa_ 12 NGSMYIGDSLELLES-F--PEESISLVMTS--PPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAY 86 (320)
T ss_dssp SEEEEESCHHHHGGG-S--CSSCEEEEEEC--CCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCE
T ss_pred CCEEEehhHHHHHhh-C--ccCCCCEEEEC--CCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchh
Confidence 458999999998765 4 58999999887 333211 1 1111111256789999999999999986432
Q ss_pred --------HHHHHHHHHHHHhcCC
Q 021567 242 --------EEVMLRMKQQFLEYGK 257 (311)
Q Consensus 242 --------~~~~~~~~~~l~~~g~ 257 (311)
..........+...++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~ 110 (320)
T d1booa_ 87 MKGVPARSIYNFRVLIRMIDEVGF 110 (320)
T ss_dssp ETTEEEECCHHHHHHHHHHHTTCC
T ss_pred hcccccccchhHHHHHHHHHhcCc
Confidence 2233344455556555
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.11 E-value=0.39 Score=37.22 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=59.3
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+.+||=+|||. |..+..+|+.. +.+++++|.++.-++.+++.|.+. ++..+-.+..+.......+ .+.++.....
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~--~i~~~~~~~~~~~~~~~~g-~~~~i~~~~~ 103 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASL--TVNARQEDPVEAIQRDIGG-AHGVLVTAVS 103 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSE--EEETTTSCHHHHHHHHHSS-EEEEEECCSC
T ss_pred CCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccc--cccccchhHHHHHHHhhcC-Cccccccccc
Confidence 55676699875 55566677765 589999999888788888877653 2333323322221111123 3444333221
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...++...+.|+|||++.+.
T Consensus 104 --------------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 104 --------------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp --------------HHHHHHHHTTEEEEEEEEEC
T ss_pred --------------chHHHHHHHHhcCCcEEEEE
Confidence 35678889999999999874
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.20 E-value=0.5 Score=36.80 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=60.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++.+||=+|||. |.++.++|+.. +.+++++|....-++.+++.|.+.+ +..+-.+.. ......+|.++-.-.
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~--i~~~~~~~~----~~~~~~~D~vid~~g 102 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEV--VNSRNADEM----AAHLKSFDFILNTVA 102 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEE--EETTCHHHH----HTTTTCEEEEEECCS
T ss_pred CCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEE--EECchhhHH----HHhcCCCceeeeeee
Confidence 356777789875 77788888876 6788899976555566677776532 322222211 112356898866544
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+ .-++...+.|+|+|++.+.
T Consensus 103 ~~--------------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 103 AP--------------HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp SC--------------CCHHHHHTTEEEEEEEEEC
T ss_pred cc--------------hhHHHHHHHHhcCCEEEEe
Confidence 44 2356677999999999985
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=90.14 E-value=0.16 Score=43.33 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=38.4
Q ss_pred hhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc
Q 021567 119 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS 168 (311)
Q Consensus 119 ~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~ 168 (311)
..+.+ ++.+|||.=||+|..+.+..+. +.+++|+|+++...+.+.++
T Consensus 245 ~~~s~-~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~R 291 (320)
T d1booa_ 245 RMLTE-PDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFR 291 (320)
T ss_dssp HHHCC-TTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGG
T ss_pred hhccc-CCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHH
Confidence 33444 6899999999999999888776 68999999998887777544
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.13 E-value=0.54 Score=36.24 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=57.7
Q ss_pred CCCeEEEEeccccHH-HHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEE-EccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLF-LLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~-~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~-~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+||=+|||+-.+ ...+|+. ...+++++|.++.-++.+++.|.+.+.-. ..|....+... .++ .+.++..-
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~---~~~-~~~~v~~~ 101 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEK---VGG-VHAAVVTA 101 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHH---HSS-EEEEEESS
T ss_pred CCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccc---cCC-CceEEeec
Confidence 356777789887555 4455555 46789999998887888888776532111 11111111111 133 34443331
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+. ...++...+.|+|||.+.+.
T Consensus 102 ~~--------------~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 102 VS--------------KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp CC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred CC--------------HHHHHHHHHHhccCCceEec
Confidence 11 36788999999999999974
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.44 E-value=0.57 Score=36.61 Aligned_cols=95 Identities=14% Similarity=0.027 Sum_probs=61.7
Q ss_pred CCeEEEEecc--ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEeC
Q 021567 126 QPLVVDIGSG--NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcG--tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~f 202 (311)
+..||=.|+| .|.+++++|+.. +.++++++.++.-.+.+++.|.+.+ +..+-.++.+.+... ...-+|.|+ .+
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa~~v--i~~~~~d~~~~v~~~t~g~g~d~v~-d~ 104 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQV--INYREEDLVERLKEITGGKKVRVVY-DS 104 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHTTTCCEEEEE-EC
T ss_pred CCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCCeEE--EECCCCCHHHHHHHHhCCCCeEEEE-eC
Confidence 4567776444 688899999875 6899999998887788887776532 332223332222111 245677654 33
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..+ +.++...+.|+|+|++.+.
T Consensus 105 ~g~--------------~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 105 VGR--------------DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp SCG--------------GGHHHHHHTEEEEEEEEEC
T ss_pred ccH--------------HHHHHHHHHHhcCCeeeec
Confidence 322 4467788999999998764
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=88.95 E-value=2.5 Score=35.41 Aligned_cols=122 Identities=10% Similarity=-0.010 Sum_probs=77.1
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~ 207 (311)
+|||+=||-|.+...+-+.. -..+.++|+.+.|.+..+.+- + -.++.+|+.++....+ ..+|+++..+|-.-+
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG-~~~~~a~e~d~~a~~~~~~N~-~-~~~~~~Di~~~~~~~~----~~~dll~~g~PCq~f 74 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNH-S-AKLIKGDISKISSDEF----PKCDGIIGGPPCQSW 74 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHT-CEEEEEEECCHHHHHHHHHHC-C-SEEEESCTTTSCGGGS----CCCSEEEECCCCTTT
T ss_pred eEEEeCcCcCHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHC-C-CCCccCChhhCCHhHc----ccccEEeeccccccc
Confidence 58999999999998887652 124569999988887665443 2 2457899888733222 368999999886655
Q ss_pred CCch------hhhhhhHHHHHHHHHhcccCCeEEEEE-------eCcHHHHHHHHHHHHhcCCC
Q 021567 208 NRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 208 k~~h------~krRl~~~~~l~~i~rvLkpGG~l~~~-------tD~~~~~~~~~~~l~~~g~~ 258 (311)
.... ..|...-.++++ +...++|.-.+ +. .+...+++.++..+.+.|+.
T Consensus 75 S~ag~~~g~~d~r~~l~~~~~~-~i~~~~Pk~~~-lENV~~~~~~~~~~~~~~~l~~l~~lGY~ 136 (324)
T d1dcta_ 75 SEGGSLRGIDDPRGKLFYEYIR-ILKQKKPIFFL-AENVKGMMAQRHNKAVQEFIQEFDNAGYD 136 (324)
T ss_dssp SSSSCCCCSSSHHHHHHHHHHH-HHHHHCCSEEE-EEEEGGGGSGGGHHHHHHHHHHHHHHHEE
T ss_pred ccccccccccccccchHHHHHH-HHHhhCCceee-ccccccccccccchhhHHHHhHHhhCCCc
Confidence 4221 111111123333 45567886444 32 23456677888888877764
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.52 E-value=0.28 Score=40.45 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=35.2
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL 165 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a 165 (311)
...+.+ ++.+|||-=||+|..+.+..+. +.+++|+|+.+...+.|
T Consensus 206 I~~~s~-~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a 250 (256)
T d1g60a_ 206 IRASSN-PNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQA 250 (256)
T ss_dssp HHHHCC-TTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred HHHhCC-CCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence 344555 5889999999999999888777 67999999976554444
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.46 E-value=0.93 Score=34.99 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=63.4
Q ss_pred eEEEEeccc-cH-HHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 128 LVVDIGSGN-GL-FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 128 ~vLDIGcGt-G~-~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
.|+=||||. |. ++..|.+..++.+++|+|.+...++.+++.+..+.. ..+.... .+...|.|++.-| |
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~-------~~~~~dlIila~p-~ 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEG--TTSIAKV-------EDFSPDFVMLSSP-V 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEE--ESCGGGG-------GGTCCSEEEECSC-H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhh--hhhhhhh-------hccccccccccCC-c
Confidence 366689975 43 344555566678999999998888888777642211 1222111 1335688877644 2
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-HHHHHHHHHHH
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF 252 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~~~~~~~~~~l 252 (311)
. ...++++++.+.++++..+.-.+.. ....+.+.+.+
T Consensus 73 ~----------~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~ 110 (171)
T d2g5ca2 73 R----------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL 110 (171)
T ss_dssp H----------HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred h----------hhhhhhhhhhccccccccccccccccHHHHHHHHHhh
Confidence 1 1257889999999998777644332 23344444444
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=87.68 E-value=0.72 Score=35.25 Aligned_cols=109 Identities=9% Similarity=0.042 Sum_probs=65.6
Q ss_pred ccccHHHHHHHhh--CCCCeEEEEchHH-HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCc
Q 021567 134 SGNGLFLLGMARK--RKDLNFLGLELVT-HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 210 (311)
Q Consensus 134 cGtG~~~~~lA~~--~p~~~vvGiDi~~-~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~ 210 (311)
||.|.++..+++. ..+..++.||..+ ...+.+......++.++.||+.+. ..+-...-...|.+++..++..
T Consensus 9 ~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~-~~L~~a~i~~a~~vi~~~~~d~---- 83 (153)
T d1id1a_ 9 CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDS-SVLKKAGIDRCRAILALSDNDA---- 83 (153)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSH-HHHHHHTTTTCSEEEECSSCHH----
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcch-HHHHHhccccCCEEEEccccHH----
Confidence 5557787777764 2357889998753 333333332235789999998874 2111112345777877755431
Q ss_pred hhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 211 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 211 h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
..-.+....+-+.|.-.++..+++..+.+. +++.|..
T Consensus 84 -------~n~~~~~~~r~~~~~~~iia~~~~~~~~~~----l~~~Gad 120 (153)
T d1id1a_ 84 -------DNAFVVLSAKDMSSDVKTVLAVSDSKNLNK----IKMVHPD 120 (153)
T ss_dssp -------HHHHHHHHHHHHTSSSCEEEECSSGGGHHH----HHTTCCS
T ss_pred -------HHHHHHHHHHHhCCCCceEEEEcCHHHHHH----HHHCCCC
Confidence 123445567778899888888877655443 4555653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=87.33 E-value=1.3 Score=34.01 Aligned_cols=86 Identities=9% Similarity=0.056 Sum_probs=51.6
Q ss_pred EEEEeccc--cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCC
Q 021567 129 VVDIGSGN--GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 206 (311)
Q Consensus 129 vLDIGcGt--G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~ 206 (311)
|.=||+|. +.++..|++. +.++++.|.+...++++++.+.-+. ...+.+.+ ...|.|++.-|+.
T Consensus 3 I~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~--~~~~~~~~---------~~~DiIilavp~~- 68 (165)
T d2f1ka2 3 IGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDE--AGQDLSLL---------QTAKIIFLCTPIQ- 68 (165)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSE--EESCGGGG---------TTCSEEEECSCHH-
T ss_pred EEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccce--eeeecccc---------cccccccccCcHh-
Confidence 44466652 2233344433 6799999998887888777664221 12222211 2457777764421
Q ss_pred CCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 207 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 207 ~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...+.++++...|+++-.+.-.
T Consensus 69 ----------~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 69 ----------LILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp ----------HHHHHHHHHGGGSCTTCEEEEC
T ss_pred ----------hhhhhhhhhhhhcccccceeec
Confidence 1257889999999999877543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=87.15 E-value=1.7 Score=37.01 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=78.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
.-++||+-||-|.+...|.+.. -..+.++|+.+.|.+..+.+- ++. .++|+.++.... -..+|+++..+|-.
T Consensus 11 ~lrv~~lFsG~Gg~~~gl~~aG-~~~v~a~e~d~~a~~~~~~N~-~~~--~~~Di~~~~~~~----~~~~Dll~ggpPCq 82 (327)
T d2c7pa1 11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNF-GEK--PEGDITQVNEKT----IPDHDILCAGFPCQ 82 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHH-SCC--CBSCGGGSCGGG----SCCCSEEEEECCCT
T ss_pred CCeEEEECccccHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHC-CCC--CcCchhcCchhh----cceeeeeecccccc
Confidence 4689999999999999987663 124677999888887765442 222 258887763221 24689999998855
Q ss_pred CCCCchh------hhhhhHHHHHHHHHhcccCCeEEEEE-------eCcHHHHHHHHHHHHhcCCCce
Q 021567 206 DFNRPEH------RWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 206 ~~k~~h~------krRl~~~~~l~~i~rvLkpGG~l~~~-------tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
-+..... .|.-.-..+++ +.+.++|.=. ++. .+....++.+++.|++.|+...
T Consensus 83 ~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~kP~~~-~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~ 148 (327)
T d2c7pa1 83 AFSISGKQKGFEDSRGTLFFDIAR-IVREKKPKVV-FMENVKNFASHDNGNTLEVVKNTMNELDYSFH 148 (327)
T ss_dssp TTCTTSCCCGGGSTTSCHHHHHHH-HHHHHCCSEE-EEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCE
T ss_pred hhhhhhhhcCCcccchhHHHHHHH-HHhccCCcEE-ecccchhhhhhccchhhHHhhhHHHhcCCcce
Confidence 4442211 11111133433 3456788644 332 3455677888899999887543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.47 E-value=0.33 Score=40.53 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=32.5
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH 160 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~ 160 (311)
...+.+ ++.+|||-=||+|..+.+..+. +.+++|+|+++.
T Consensus 201 I~~~s~-~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~ 240 (279)
T d1eg2a_ 201 VRALSH-PGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPV 240 (279)
T ss_dssp HHHHSC-TTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTH
T ss_pred HHhhcC-CCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHH
Confidence 344555 6889999999999999888887 679999998543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.43 E-value=0.57 Score=36.70 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=60.2
Q ss_pred CCeEEEEe--ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEeC
Q 021567 126 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIG--cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~f 202 (311)
+..||=.| .|.|.+++++|+.. +.++++++-+..-.+.+++.|.+.+ +..+-.++....... ...-+|.++-..
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~v--i~~~~~~~~~~v~~~t~~~g~d~v~d~~ 102 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYV--GDSRSVDFADEILELTDGYGVDVVLNSL 102 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEE--EETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CCEEEEECCCCCcccccchhhccc-cccceeeeccccccccccccccccc--ccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence 45677656 56788899999875 5788888766555677777776543 222222332222111 245689887542
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. .+.++.+.++|+++|+++..
T Consensus 103 g---------------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 103 A---------------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp C---------------THHHHHHHHTEEEEEEEEEC
T ss_pred c---------------chHHHHHHHHhcCCCEEEEE
Confidence 1 14577888999999998874
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=86.25 E-value=0.89 Score=35.74 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=63.3
Q ss_pred CCCeEEEEecc--ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhh-ccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSG--NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcG--tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~-~~~~~s~D~V~i~ 201 (311)
++..||=.|.+ -|..++++|+.. ++++++++-+++..+.+++.|.+.+ +...| .+..+... .....-+|.|+=.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~-~~~~~~~~~~~~~~Gvd~v~D~ 105 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDAA-FNYKT-VNSLEEALKKASPDGYDCYFDN 105 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEE-EETTS-CSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhhhhh-ccccc-ccHHHHHHHHhhcCCCceeEEe
Confidence 35677766663 577788889876 6899999988777777877776544 22222 22211111 1134568887532
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. -.+.+++..++|+|||.+.+.
T Consensus 106 -v--------------G~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 106 -V--------------GGEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp -S--------------CHHHHHHHGGGEEEEEEEEEC
T ss_pred -c--------------CchhhhhhhhhccCCCeEEee
Confidence 1 136788999999999999874
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=83.64 E-value=0.63 Score=41.59 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=62.9
Q ss_pred CeEEEEeccccHHHHHHHh----------------hCCCCeEEEEchH-H--HHH-HHHHH-cCCCcEEEEEccccchhh
Q 021567 127 PLVVDIGSGNGLFLLGMAR----------------KRKDLNFLGLELV-T--HCR-DSLQL-SGITNGYFIATNATSTFR 185 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~----------------~~p~~~vvGiDi~-~--~a~-~~a~~-~~~~Nv~f~~~Da~~ll~ 185 (311)
-+|.|+||.+|..++.+.. ..|+.+|.--|+- . .++ +.+.. .....-.|+.+=.-.+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 4589999999998843221 1345677777741 1 111 11111 111122344444444445
Q ss_pred hhhccCCCcEeEEEEeCCCCCCCCc-----------hhh-------h----hh---hHHHHHHHHHhcccCCeEEEEEe
Q 021567 186 SIVASYPGKLILVSIQCPNPDFNRP-----------EHR-------W----RM---VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 186 ~~~~~~~~s~D~V~i~fpdP~~k~~-----------h~k-------r----Rl---~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.+| |+++++.++..+.-.|..+. |.. . +- .-..||+.=++-|+|||++++..
T Consensus 133 rLf--P~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 133 RLF--PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCS--CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hcC--CCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 556 58999999988766664320 000 0 00 01467888888999999999853
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=83.41 E-value=1 Score=35.09 Aligned_cols=99 Identities=8% Similarity=0.030 Sum_probs=59.1
Q ss_pred CCCeEEEEecccc-HHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhh-ccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNG-LFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG-~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~-~~~~~s~D~V~i~f 202 (311)
++..||=+|+|.+ .....+++..-..+++++|.++.-++.+++.+.+.+.. ..+..+...... ....+-+|.++-..
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~G~D~vid~~ 106 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN-PQDYKKPIQEVLTEMSNGGVDFSFEVI 106 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEEC-GGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEe-cCCchhHHHHHHHHHhcCCCCEEEecC
Confidence 4678888999654 45666677776689999998876677777777653221 122222111100 11356788876553
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
.. +..++.....+++| |.+.+.
T Consensus 107 G~--------------~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 107 GR--------------LDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp CC--------------HHHHHHHHHHBCTTTCEEEEC
T ss_pred Cc--------------hhHHHHHHHHHhcCCcceEEe
Confidence 32 25566677777776 565553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.40 E-value=0.75 Score=36.61 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=58.5
Q ss_pred CCeEEEEe--ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIG--cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..||=-| -|-|.+++++|+.. +.++++.--++.-.+.+++.|.+.+--...+..+. .....+..+|.|+=...
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~---~~~~~~~gvD~vid~vg 107 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAER---IRPLDKQRWAAAVDPVG 107 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC------------CCSCCEEEEEECST
T ss_pred CCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHH---HHHhhccCcCEEEEcCC
Confidence 45566666 46788899999886 78899988765556666666665432211111111 11113567997754422
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...++...++|+|||+++..
T Consensus 108 ---------------g~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 108 ---------------GRTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp ---------------TTTHHHHHHTEEEEEEEEEC
T ss_pred ---------------chhHHHHHHHhCCCceEEEe
Confidence 24578888999999999874
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=82.15 E-value=1.3 Score=34.55 Aligned_cols=91 Identities=19% Similarity=0.083 Sum_probs=57.6
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++..||=.|. |.|..++++|+.. +.++++++.++.-++.+++.|.+.+. |..+.....- ...-+|.|+ .+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa~~~i----~~~~~~~~~~--~~~g~D~v~-d~ 98 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEAA----TYAEVPERAK--AWGGLDLVL-EV 98 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEEE----EGGGHHHHHH--HTTSEEEEE-EC
T ss_pred CCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccccccceee----ehhhhhhhhh--ccccccccc-cc
Confidence 3566777773 4478888899886 57999999776666667777765432 2222211111 234588774 33
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.-+ .++...+.|+|+|++++.
T Consensus 99 ~G~---------------~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 99 RGK---------------EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp SCT---------------THHHHHTTEEEEEEEEEC
T ss_pred cch---------------hHHHHHHHHhcCCcEEEE
Confidence 211 246677899999999863
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=82.07 E-value=1 Score=38.13 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=61.1
Q ss_pred CCeEEEEeccccHHHHHHHhhC----CC------------------------------------CeEEEEchHHHHHH--
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR----KD------------------------------------LNFLGLELVTHCRD-- 163 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~----p~------------------------------------~~vvGiDi~~~a~~-- 163 (311)
...++|=.||+|++.+..|-.. |+ ..++|.|+...+++
T Consensus 51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A 130 (249)
T d1o9ga_ 51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 130 (249)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence 3469999999999999887531 11 12345554333332
Q ss_pred -----HHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhh---hHHHHHHHHHhcccCCeE
Q 021567 164 -----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRM---VQRSLVEAVSDLLVHDGK 234 (311)
Q Consensus 164 -----~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl---~~~~~l~~i~rvLkpGG~ 234 (311)
+++..|+. -+++.+.|+.+..+.....++....+|+.| .|+=..-...... ....+...+.++|.....
T Consensus 131 ~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtN--PPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~ 208 (249)
T d1o9ga_ 131 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTD--LPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 208 (249)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEE--CCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeC--CCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence 34445654 488999998765321000123455788888 3431111000000 125777778888855555
Q ss_pred EEEEeC
Q 021567 235 VFLQSD 240 (311)
Q Consensus 235 l~~~tD 240 (311)
+++ |+
T Consensus 209 ~~i-t~ 213 (249)
T d1o9ga_ 209 IAV-TD 213 (249)
T ss_dssp EEE-EE
T ss_pred EEE-eC
Confidence 554 54
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.21 E-value=1.8 Score=33.83 Aligned_cols=97 Identities=8% Similarity=-0.063 Sum_probs=58.4
Q ss_pred CCCeEEEEeccccHH-HHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEE-EEEcc--ccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLF-LLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATN--ATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~-~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~-f~~~D--a~~ll~~~~~~~~~s~D~V~i 200 (311)
++..||=+|||.... ++.+|+..-..+++++|.++.-++.+++.|.+.+- ....| ....... . .++-+|.++-
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~-~--~~~G~d~vid 103 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICE-K--TNGGVDYAVE 103 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH-H--TTSCBSEEEE
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHH-h--cCCCCcEEEE
Confidence 467899999986544 56667766557899999988888888887765321 11122 1111111 1 2445787765
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcc-cCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLL-VHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvL-kpGG~l~~~ 238 (311)
.-.. ...++.....+ +++|.+.+.
T Consensus 104 ~~g~--------------~~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 104 CAGR--------------IETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp CSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred cCCC--------------chHHHHHHHHHHHhcCceEEE
Confidence 4222 24455555555 556888873
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.81 E-value=1.6 Score=34.31 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=58.1
Q ss_pred CCCeEEEEeccccH-HHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEE-EEEccc-cchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGL-FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNA-TSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~-~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~-f~~~Da-~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++..||=+|||... +++.+++..-..+|+++|.++.-++.+++.|.+.+- ....|. ........ ...-+|.++..
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~--~g~G~d~vi~~ 106 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEM--TGNNVGYTFEV 106 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH--HTSCCCEEEEC
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHh--ccccceEEEEe
Confidence 46789999998644 456667766557999999988888888888865321 111111 11111111 24557877554
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...+ ..+...+..+++++|.+++.
T Consensus 107 ~g~~-------------~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 107 IGHL-------------ETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp SCCH-------------HHHHHHHTTSCTTTCEEEEC
T ss_pred CCch-------------HHHHHHHHHhhcCCeEEEEE
Confidence 2222 13334444555666888874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.76 E-value=1.3 Score=34.26 Aligned_cols=96 Identities=11% Similarity=0.021 Sum_probs=60.1
Q ss_pred CCCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc---cccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~---Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+||=+||| .|.+++++|+..-...++++|.++.-++.+++.|.+.+--... ++...... ...+-+|.++-
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~---~~~~g~D~vid 104 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIE---MTDGGVDYSFE 104 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHH---HTTSCBSEEEE
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHH---HcCCCCcEeee
Confidence 45677777776 3555677787765678999998877777787777654221111 11111111 12456888865
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
.-.. +..++.....+++||.+.+
T Consensus 105 ~~G~--------------~~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 105 CIGN--------------VKVMRAALEACHKGWGVSV 127 (176)
T ss_dssp CSCC--------------HHHHHHHHHTBCTTTCEEE
T ss_pred cCCC--------------HHHHHHHHHhhcCCceeEE
Confidence 4222 3678888899999877655
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=80.38 E-value=1.3 Score=34.18 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=36.6
Q ss_pred CCCeEEEEeccccHH-HHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCc
Q 021567 125 AQPLVVDIGSGNGLF-LLGMARKRKDLNFLGLELVTHCRDSLQLSGITN 172 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~-~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~N 172 (311)
++..||=+|||.+.. +..+++..-...++++|..+.-++.+++.|.+.
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~ 76 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 76 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCE
T ss_pred CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcE
Confidence 467899899998444 555666666678999999887788888887653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.28 E-value=2.1 Score=33.88 Aligned_cols=98 Identities=15% Similarity=0.073 Sum_probs=65.4
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..+|+=||+|. |..+++.|.+. +++++.+|.....++.++.....++.....+-..+ .+.+. ..|.|+-.--
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l-~~~~~----~aDivI~aal 104 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEI-ETAVA----EADLLIGAVL 104 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHH-HHHHH----TCSEEEECCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhH-HHhhc----cCcEEEEeee
Confidence 356899999996 66678888876 68999999988888877765556788887776665 33332 3576653322
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
-|- ++-+ .++. +++.+.+|||.+++
T Consensus 105 ipG--~~aP--~lIt----~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 105 VPG--RRAP--ILVP----ASLVEQMRTGSVIV 129 (168)
T ss_dssp CTT--SSCC--CCBC----HHHHTTSCTTCEEE
T ss_pred cCC--cccC--eeec----HHHHhhcCCCcEEE
Confidence 221 1111 2343 44568899999876
|