Citrus Sinensis ID: 021583
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 310 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LG95 | 307 | Pentatricopeptide repeat- | yes | no | 0.825 | 0.833 | 0.695 | 1e-106 | |
| Q2V3H0 | 287 | Pentatricopeptide repeat- | no | no | 0.632 | 0.682 | 0.436 | 5e-43 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.5 | 0.189 | 0.271 | 5e-05 | |
| Q8S9D1 | 831 | Pentatricopeptide repeat- | no | no | 0.293 | 0.109 | 0.288 | 0.0007 |
| >sp|Q8LG95|PP332_ARATH Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/269 (69%), Positives = 218/269 (81%), Gaps = 13/269 (4%)
Query: 1 MLSLSYSLPPF--------TKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTI 52
MLSL YSLP TK+F ++ ++VVCAARGPRPR PRVWK RKRIGTI
Sbjct: 1 MLSLRYSLPYLLLQTRESSTKLF-----TKKPNNVVVCAARGPRPRSPRVWKTRKRIGTI 55
Query: 53 SKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTK 112
SK+AK++ CIKGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL LE+EK+WK+IIQVTK
Sbjct: 56 SKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTK 115
Query: 113 WMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNR 172
WMLSKGQGRTMGTYF LLNALAED RLDEAEELW K+F++HLEGTPR FF+KMISIYY R
Sbjct: 116 WMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKR 175
Query: 173 GMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKG 232
MH+K+FE+FADMEELGV+PNV+IVSM+G F KL M DKYEKL KKYPPP+WE+RYIKG
Sbjct: 176 DMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKG 235
Query: 233 KRVRIPAKPKYELDSATEGKTNEVETTKN 261
+RV++ AK EL G +++ + N
Sbjct: 236 RRVKVKAKQLNELSEGEGGLSSDEDKIDN 264
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2V3H0|PP322_ARATH Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 1/197 (0%)
Query: 41 RVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEN 100
+WK G+ K+ LV + GL N KE VYGAL+ ++AWE+EFP+I KAL+ L
Sbjct: 84 HLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRK 143
Query: 101 EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI 160
W R+IQ+ KWMLSKGQG TMGTY +LL A D R DEAE LW I H PR
Sbjct: 144 RSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRR 203
Query: 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY 220
F +MI++Y + +H+K+ E+FADMEEL V P+ + AF++L + + + ++Y
Sbjct: 204 LFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY 263
Query: 221 PPPKWEYRYIKGKRVRI 237
+++Y Y G+RVR+
Sbjct: 264 -LSEYKYIYFNGERVRV 279
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 58 LVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK 117
L+TC K ++ +E + A + +T L K ++V M+
Sbjct: 285 LITCCK-RGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN 343
Query: 118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIF-FDKMISIYYNRGMH 175
G ++ TY L++A A DG LDEA EL ++ +GT P +F + ++S + G
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQM---AEKGTKPDVFTYTTLLSGFERAGKV 400
Query: 176 EKMFEIFADMEELGVRPNVSIVSMMGNAFQKL-GMLDKYEKLKKKY 220
E IF +M G +PN+ NAF K+ G K+ ++ K +
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTF----NAFIKMYGNRGKFTEMMKIF 442
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGMHEKMF 179
RT GT ++N E+G+++EA + + + L P +F F+ +I + N + +
Sbjct: 532 RTCGT---IVNGYCEEGKMEEALRFFYR--MKELGVHPNLFVFNSLIKGFLNINDMDGVG 586
Query: 180 EIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216
E+ MEE GV+P+V S + NA+ +G + + E++
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEI 623
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 310 | ||||||
| 225464623 | 295 | PREDICTED: pentatricopeptide repeat-cont | 0.919 | 0.966 | 0.697 | 1e-117 | |
| 449445975 | 331 | PREDICTED: pentatricopeptide repeat-cont | 0.974 | 0.912 | 0.648 | 1e-111 | |
| 297799952 | 317 | EMB1417 [Arabidopsis lyrata subsp. lyrat | 0.838 | 0.820 | 0.688 | 1e-105 | |
| 18415645 | 307 | pentatricopeptide repeat-containing prot | 0.825 | 0.833 | 0.695 | 1e-105 | |
| 356559734 | 343 | PREDICTED: pentatricopeptide repeat-cont | 0.922 | 0.833 | 0.628 | 1e-104 | |
| 356530814 | 343 | PREDICTED: pentatricopeptide repeat-cont | 0.948 | 0.857 | 0.612 | 1e-103 | |
| 255545154 | 359 | pentatricopeptide repeat-containing prot | 0.880 | 0.760 | 0.744 | 1e-102 | |
| 255646324 | 343 | unknown [Glycine max] | 0.948 | 0.857 | 0.608 | 1e-102 | |
| 2911076 | 325 | putative protein [Arabidopsis thaliana] | 0.751 | 0.716 | 0.732 | 1e-100 | |
| 357136512 | 296 | PREDICTED: pentatricopeptide repeat-cont | 0.890 | 0.932 | 0.641 | 3e-98 |
| >gi|225464623|ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Vitis vinifera] gi|302143769|emb|CBI22630.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/301 (69%), Positives = 241/301 (80%), Gaps = 16/301 (5%)
Query: 1 MLSLSYSLPPFTKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVT 60
ML L YS T+ + ++I +N RS+VVC A+GPRPRYPRVWK R+RIGTISKSAKLV
Sbjct: 1 MLCLRYSPATITRRLDAVEIPKNPRSIVVCGAKGPRPRYPRVWKTRQRIGTISKSAKLVD 60
Query: 61 CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG 120
CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE++K+WKRIIQVTKWMLSKGQG
Sbjct: 61 CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQG 120
Query: 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180
RTMG+YF LLNALAEDGRLDEAEELWTK+F ++LE PR+F+DKMISIYY R MHEKMFE
Sbjct: 121 RTMGSYFTLLNALAEDGRLDEAEELWTKLFSENLESLPRVFYDKMISIYYRRDMHEKMFE 180
Query: 181 IFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAK 240
IFADMEELG+RPN SIV M+G+ FQKLGMLDKYEKL+KKYPPPKWEYRYIKGKRVRI AK
Sbjct: 181 IFADMEELGIRPNTSIVKMVGDVFQKLGMLDKYEKLQKKYPPPKWEYRYIKGKRVRIRAK 240
Query: 241 PKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETEANTKELLEEADAISNES 300
E D E ES + EA +N+ E N+ E+ +EAD+ +++
Sbjct: 241 LTGESDDPGEA------------ESDDPGEAVNEINDKTE----NSNEMHDEADSSVDDA 284
Query: 301 D 301
D
Sbjct: 285 D 285
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445975|ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/307 (64%), Positives = 241/307 (78%), Gaps = 5/307 (1%)
Query: 1 MLSLSYSLPPFTKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVT 60
ML+L Y+ P +K E + S S VVCAA+GPRPRYPRVWK +KRIGTISK+AKLV
Sbjct: 19 MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 78
Query: 61 CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG 120
C+KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEN+++WKRIIQ+TKWMLSKGQG
Sbjct: 79 CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138
Query: 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180
RTMG+YF LLNALAEDGRLDEAEELW K+F HLE PRIFF KMIS+YY++ MH+K+FE
Sbjct: 139 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 198
Query: 181 IFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAK 240
+FADMEELGV+PN++IV+ +GN FQ+LGMLDKY+KL KKYPPPKWEYRYIKGKRV+I AK
Sbjct: 199 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 258
Query: 241 PKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETEANTKELLEEADAISNES 300
E ++ G + + + S +E E + + SLE+ E ++ E+ D I +
Sbjct: 259 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSE-DSSLEDDE----DMSEDPDEILEDE 313
Query: 301 DISSTSN 307
+ S SN
Sbjct: 314 HMWSKSN 320
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799952|ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata] gi|297313696|gb|EFH44119.1| EMB1417 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/273 (68%), Positives = 219/273 (80%), Gaps = 13/273 (4%)
Query: 1 MLSLSYSLPPF--------TKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTI 52
MLSL YSLP TK+F S+ ++VVCAARGPRPR PRVWK RKRIGTI
Sbjct: 1 MLSLRYSLPYLLLQTKESSTKLF-----SKRPNNVVVCAARGPRPRSPRVWKTRKRIGTI 55
Query: 53 SKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTK 112
SK+AK++ CIKGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL LE+EK+WK+IIQVTK
Sbjct: 56 SKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTK 115
Query: 113 WMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNR 172
WMLSKGQGRTMGTYF LLNALAED RLDEAEELW K+F++HLEGTPR FF+KMISIYY R
Sbjct: 116 WMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKR 175
Query: 173 GMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKG 232
MH+K+FE+FADMEELGV+PN++IVSM+G F KL M DKYEKL KKYPPP+WE+RYIKG
Sbjct: 176 DMHQKLFEVFADMEELGVKPNIAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKG 235
Query: 233 KRVRIPAKPKYELDSATEGKTNEVETTKNPNES 265
+RV++ AK EL G +++ + ES
Sbjct: 236 RRVKVKAKQLNELSEGEGGLSSDEDKIDTEIES 268
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18415645|ref|NP_567622.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75246109|sp|Q8LG95.1|PP332_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21190; AltName: Full=Protein EMBRYO DEFECTIVE 1417 gi|21618230|gb|AAM67280.1| unknown [Arabidopsis thaliana] gi|51969238|dbj|BAD43311.1| putative protein [Arabidopsis thaliana] gi|51971351|dbj|BAD44340.1| putative protein [Arabidopsis thaliana] gi|51971365|dbj|BAD44347.1| putative protein [Arabidopsis thaliana] gi|332659017|gb|AEE84417.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/269 (69%), Positives = 218/269 (81%), Gaps = 13/269 (4%)
Query: 1 MLSLSYSLPPF--------TKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTI 52
MLSL YSLP TK+F ++ ++VVCAARGPRPR PRVWK RKRIGTI
Sbjct: 1 MLSLRYSLPYLLLQTRESSTKLF-----TKKPNNVVVCAARGPRPRSPRVWKTRKRIGTI 55
Query: 53 SKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTK 112
SK+AK++ CIKGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL LE+EK+WK+IIQVTK
Sbjct: 56 SKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTK 115
Query: 113 WMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNR 172
WMLSKGQGRTMGTYF LLNALAED RLDEAEELW K+F++HLEGTPR FF+KMISIYY R
Sbjct: 116 WMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKR 175
Query: 173 GMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKG 232
MH+K+FE+FADMEELGV+PNV+IVSM+G F KL M DKYEKL KKYPPP+WE+RYIKG
Sbjct: 176 DMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKG 235
Query: 233 KRVRIPAKPKYELDSATEGKTNEVETTKN 261
+RV++ AK EL G +++ + N
Sbjct: 236 RRVKVKAKQLNELSEGEGGLSSDEDKIDN 264
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559734|ref|XP_003548152.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/299 (62%), Positives = 232/299 (77%), Gaps = 13/299 (4%)
Query: 1 MLSLSYSLPPFTKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVT 60
ML+L+ S K FE IKI + R V+CAA+G RPRYPRVWK K+IGTISK+AKLV
Sbjct: 1 MLALTDSPLLIAKTFEAIKIPTSTRGTVLCAAKGQRPRYPRVWKTHKKIGTISKAAKLVN 60
Query: 61 CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG 120
IK LSNVKEEVYGALDS++AWELEFPLITVKKALKTLE+E++WKR+IQVTKWMLSKGQG
Sbjct: 61 SIKELSNVKEEVYGALDSYVAWELEFPLITVKKALKTLESEQEWKRVIQVTKWMLSKGQG 120
Query: 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180
+TMG+YF LLNAL ED RLDEAEELWTK+ + ++E PR FFDKMISIY+ RGMHEKMFE
Sbjct: 121 KTMGSYFTLLNALVEDDRLDEAEELWTKLLMQYMESLPRRFFDKMISIYHKRGMHEKMFE 180
Query: 181 IFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAK 240
IFADMEEL +RPN+++VSM+G+AF++LGMLDKY+KL KYPPP+WEYRYI+GKRV++
Sbjct: 181 IFADMEELCLRPNIAVVSMIGDAFKELGMLDKYQKLHAKYPPPQWEYRYIRGKRVKV--- 237
Query: 241 PKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEE--TEANTKELLEEADAIS 297
E ++N+V T + EP + N N L E +E ++L ++A+ IS
Sbjct: 238 -------KVEVQSNQVNTYIE-RHGNVEPNSDLNKNYRLSEKTSEIVDQQLRQDANVIS 288
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530814|ref|XP_003533975.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/312 (61%), Positives = 233/312 (74%), Gaps = 18/312 (5%)
Query: 1 MLSLSYSLPPFTKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVT 60
ML+L+ S K FE KI + R VVCAA+GPRPRYPRVWK K+IGTISK+AKLV
Sbjct: 1 MLALTDSPLLIAKTFEATKIPTSTRGTVVCAAKGPRPRYPRVWKTHKKIGTISKAAKLVK 60
Query: 61 CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG 120
IK LSNVKEEVYGALDS++AWELEFPLITVKKALKTLE E+DWKR+IQ+TKWMLSKGQG
Sbjct: 61 SIKELSNVKEEVYGALDSYVAWELEFPLITVKKALKTLEFEQDWKRVIQITKWMLSKGQG 120
Query: 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180
+TMG+YF LLNAL ED RLDEAEELWTK+ + ++E PR FFDKMISIY+ RGMHEKMFE
Sbjct: 121 KTMGSYFTLLNALVEDDRLDEAEELWTKLLMQYMESLPRRFFDKMISIYHKRGMHEKMFE 180
Query: 181 IFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAK 240
IFADMEEL +RPN+ +VSM+G+AF++ GMLDKY KL KYPPP+WEYRYI+GKRV++
Sbjct: 181 IFADMEELCLRPNIVVVSMIGDAFKERGMLDKYLKLHAKYPPPQWEYRYIRGKRVKV--- 237
Query: 241 PKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETEANT----KELLEEADAI 296
K E+ S+ E PN ++LN+ +E + ++L ++AD I
Sbjct: 238 -KVEVQSSQVNTYIERHGNVEPN---------SDLNKDYRSSEKTSETVDQQLRQDADVI 287
Query: 297 SNESD-ISSTSN 307
S E + IS +N
Sbjct: 288 SMEPERISDINN 299
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545154|ref|XP_002513638.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547546|gb|EEF49041.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/274 (74%), Positives = 219/274 (79%), Gaps = 1/274 (0%)
Query: 1 MLSLSYSLPPFTKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVT 60
ML L LP + FE IK S++ S VV A +G RPR PRVWK + RIGTISKSAKLV
Sbjct: 35 MLCLRPPLPLISTRFEVIKFSKSTSS-VVSALKGARPRAPRVWKTKPRIGTISKSAKLVE 93
Query: 61 CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG 120
CIKGLSNVKEEVYGALDS IAWELEFPLI VKKALKTLENE++WKRIIQV KWMLSKGQG
Sbjct: 94 CIKGLSNVKEEVYGALDSLIAWELEFPLIAVKKALKTLENEQEWKRIIQVIKWMLSKGQG 153
Query: 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180
RTMGTYF LLNALAED RLDEAEELWTK+F D+LEGTPR FFDKMISIYY R MHEKMFE
Sbjct: 154 RTMGTYFTLLNALAEDERLDEAEELWTKLFSDNLEGTPRNFFDKMISIYYKREMHEKMFE 213
Query: 181 IFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAK 240
IFADMEELGVRP+VSIV+MMG+ FQKLGMLDKY KLKKKYPPPKWEYRYIKGKRVR+ AK
Sbjct: 214 IFADMEELGVRPSVSIVNMMGSVFQKLGMLDKYRKLKKKYPPPKWEYRYIKGKRVRLRAK 273
Query: 241 PKYELDSATEGKTNEVETTKNPNESSEEPEAAAN 274
E A E ET N+ +EE N
Sbjct: 274 QVNEFLGANESVNQNAETPYISNKLNEEDNTKLN 307
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255646324|gb|ACU23645.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/312 (60%), Positives = 232/312 (74%), Gaps = 18/312 (5%)
Query: 1 MLSLSYSLPPFTKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVT 60
ML+L+ S K FE KI + R VVCAA+GPRPRYPRVWK K+IGTISK+AKLV
Sbjct: 1 MLALTDSPLLIAKTFEATKIPTSTRGTVVCAAKGPRPRYPRVWKTHKKIGTISKAAKLVK 60
Query: 61 CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG 120
IK LSNVKEEVYGALDS++AWELEFPLITVKKALKTLE E+DWKR+IQ+TKWMLSKGQG
Sbjct: 61 SIKELSNVKEEVYGALDSYVAWELEFPLITVKKALKTLEFEQDWKRVIQITKWMLSKGQG 120
Query: 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180
+TMG+YF LLNAL ED RLDEAEELWTK+ + ++E PR FFDKMISIY+ RGMHEKMFE
Sbjct: 121 KTMGSYFTLLNALVEDDRLDEAEELWTKLLMQYMESLPRRFFDKMISIYHKRGMHEKMFE 180
Query: 181 IFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAK 240
IFADMEEL +RPN+ +VSM+G+AF++ G LDKY KL KYPPP+WEYRYI+GKRV++
Sbjct: 181 IFADMEELCLRPNIVVVSMIGDAFKERGTLDKYLKLHAKYPPPQWEYRYIRGKRVKV--- 237
Query: 241 PKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETEANT----KELLEEADAI 296
K E+ S+ E PN ++LN+ +E + ++L ++AD I
Sbjct: 238 -KVEVQSSQVNTYIERHGNVEPN---------SDLNKDYRSSEKTSETVDQQLRQDADVI 287
Query: 297 SNESD-ISSTSN 307
S E + IS +N
Sbjct: 288 SMEPERISDINN 299
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2911076|emb|CAA17538.1| putative protein [Arabidopsis thaliana] gi|7268916|emb|CAB79119.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/239 (73%), Positives = 201/239 (84%), Gaps = 6/239 (2%)
Query: 29 VCAARGPRPRYPRVWKARKRIGTISKSAKLVTC------IKGLSNVKEEVYGALDSFIAW 82
VCAARGPRPR PRVWK RKRIGTISK+AK++ C IKGLSNVKEEVYGALDSFIAW
Sbjct: 44 VCAARGPRPRSPRVWKTRKRIGTISKAAKMIACVMLSSYIKGLSNVKEEVYGALDSFIAW 103
Query: 83 ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEA 142
ELEFPL+ VKKAL LE+EK+WK+IIQVTKWMLSKGQGRTMGTYF LLNALAED RLDEA
Sbjct: 104 ELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEA 163
Query: 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGN 202
EELW K+F++HLEGTPR FF+KMISIYY R MH+K+FE+FADMEELGV+PNV+IVSM+G
Sbjct: 164 EELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVKPNVAIVSMVGK 223
Query: 203 AFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKN 261
F KL M DKYEKL KKYPPP+WE+RYIKG+RV++ AK EL G +++ + N
Sbjct: 224 VFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKVKAKQLNELSEGEGGLSSDEDKIDN 282
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357136512|ref|XP_003569848.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 184/287 (64%), Positives = 218/287 (75%), Gaps = 11/287 (3%)
Query: 1 MLSLSYSLPPFTKIFEPIKISRNAR--SLVVCAARGPRPRYPRVWKARKRIGTISKSAKL 58
MLSL Y P F E + + S+VVC ARGPRPRYPRVWKA KRIGT+SKS KL
Sbjct: 1 MLSLKYGTPTFGLALERTAVPHTQKFSSVVVCGARGPRPRYPRVWKADKRIGTVSKSQKL 60
Query: 59 VTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG 118
V CIK LSNVKEEVYGALDSF+AWELEFPLI VKKALKTLE+EK+WKRIIQV KWM +KG
Sbjct: 61 VKCIKDLSNVKEEVYGALDSFVAWELEFPLIAVKKALKTLEDEKEWKRIIQVIKWMFNKG 120
Query: 119 QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKM 178
QG+TMG+Y+ LLNAL EDGR++EAEEL+ KIF ++EG PR FF ++IS+YY+ G ++K+
Sbjct: 121 QGKTMGSYYTLLNALIEDGRVEEAEELFGKIFSRYMEGLPRTFFMRIISLYYSLGSYQKI 180
Query: 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIP 238
FE+FADMEELGVRP+ SIV M+G FQKL M DKYEKL KKYPPPK EYRYIKGKR+R+
Sbjct: 181 FEVFADMEELGVRPDRSIVRMLGQVFQKLEMFDKYEKLIKKYPPPKIEYRYIKGKRIRLK 240
Query: 239 AKPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETEAN 285
P D++TE TN+ T E EE E NL++ LEE +
Sbjct: 241 IYP----DNSTEEATNKYSAT----EELEEAE-GINLDKKLEEAAST 278
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 310 | ||||||
| TAIR|locus:2127388 | 307 | emb1417 "AT4G21190" [Arabidops | 0.822 | 0.830 | 0.662 | 9.9e-87 | |
| TAIR|locus:505006498 | 287 | AT4G18975 "AT4G18975" [Arabido | 0.629 | 0.679 | 0.428 | 2.9e-39 | |
| TAIR|locus:2197783 | 384 | AT1G04590 "AT1G04590" [Arabido | 0.554 | 0.447 | 0.386 | 1e-27 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.454 | 0.172 | 0.271 | 8e-05 |
| TAIR|locus:2127388 emb1417 "AT4G21190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 171/258 (66%), Positives = 199/258 (77%)
Query: 1 MLSLSYSLPPF---TKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAK 57
MLSL YSLP T+ ++ ++VVCAARGPRPR PRVWK RKRIGTISK+AK
Sbjct: 1 MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60
Query: 58 LVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK 117
++ CIKGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL LE+EK+WK+IIQVTKWMLSK
Sbjct: 61 MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120
Query: 118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEK 177
GQGRTMGTYF LLNALAED RLDEAEELW K+F++HLEGTPR FF+KMISIYY R MH+K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180
Query: 178 MFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDXXXXXXXXXXXXXXXXRYIKGKRVRI 237
+FE+FADMEELGV+PNV+IVSM+G F KL M D RYIKG+RV++
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240
Query: 238 PAKPKYELDSATEGKTNE 255
AK EL G +++
Sbjct: 241 KAKQLNELSEGEGGLSSD 258
|
|
| TAIR|locus:505006498 AT4G18975 "AT4G18975" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 84/196 (42%), Positives = 112/196 (57%)
Query: 42 VWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENE 101
+WK G+ K+ LV + GL N KE VYGAL+ ++AWE+EFP+I KAL+ L
Sbjct: 85 LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144
Query: 102 KDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161
W R+IQ+ KWMLSKGQG TMGTY +LL A D R DEAE LW I H PR
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204
Query: 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDXXXXXXXXXX 221
F +MI++Y + +H+K+ E+FADMEEL V P+ + AF++L +
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRYL 264
Query: 222 XXXXXXRYIKGKRVRI 237
Y G+RVR+
Sbjct: 265 SEYKYI-YFNGERVRV 279
|
|
| TAIR|locus:2197783 AT1G04590 "AT1G04590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 68/176 (38%), Positives = 102/176 (57%)
Query: 40 PRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE 99
PR + + I K LV + + + KE VYGALD+++AWE FP+ ++K + +LE
Sbjct: 131 PRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLE 190
Query: 100 NEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR 159
E W R++QV KW+LSKGQG TMGTY L+ AL D R +EA +W K + L P
Sbjct: 191 KEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPW 250
Query: 160 IFFDKMISIYYNRGMHE---KMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLD 211
+M+ IY+ M + K+ ++F D+E +P + IV + +A++ LGMLD
Sbjct: 251 QLCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLD 306
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 41/151 (27%), Positives = 68/151 (45%)
Query: 58 LVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK 117
L+TC K ++ +E + A + +T L K ++V M+
Sbjct: 285 LITCCKR-GSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN 343
Query: 118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIF-FDKMISIYYNRGMH 175
G ++ TY L++A A DG LDEA EL ++ +GT P +F + ++S + G
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAE---KGTKPDVFTYTTLLSGFERAGKV 400
Query: 176 EKMFEIFADMEELGVRPNV----SIVSMMGN 202
E IF +M G +PN+ + + M GN
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTFNAFIKMYGN 431
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 310 268 0.00096 114 3 11 22 0.49 33
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 611 (65 KB)
Total size of DFA: 197 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.90u 0.10s 21.00t Elapsed: 00:00:00
Total cpu time: 20.90u 0.10s 21.00t Elapsed: 00:00:00
Start: Fri May 10 02:15:31 2013 End: Fri May 10 02:15:31 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LG95 | PP332_ARATH | No assigned EC number | 0.6951 | 0.8258 | 0.8338 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 310 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 165 MISIYYNRGMHEKMFEIFADMEELGVRPNV 194
+I Y +G E+ ++F +M++ G++PNV
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNV 38
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 5e-04
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPNV 194
++ +I G E+ E+F +M+E G+ P+V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 310 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.97 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.97 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.53 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.52 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.45 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.32 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.06 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.05 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.01 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.95 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.88 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.83 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.76 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.72 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.63 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.58 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.58 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.55 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.52 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.5 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.47 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.37 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.34 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.33 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.32 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.26 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.24 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.24 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.24 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.21 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.21 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.2 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.17 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.14 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.12 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.1 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.09 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.09 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.07 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.06 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.02 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.02 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.0 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.94 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.93 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.89 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.85 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.83 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.83 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.82 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.81 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.78 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.74 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.74 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.74 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.74 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.7 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.67 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.64 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.64 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.6 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.57 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.43 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.38 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.32 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.26 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.24 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.21 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.2 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 97.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.17 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.15 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.14 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.14 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.13 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.12 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.06 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.06 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.04 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.04 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.03 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.01 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 96.99 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.97 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.97 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 96.95 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.94 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.93 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.88 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.84 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 96.79 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.75 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.7 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.7 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.68 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.64 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.6 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.57 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 96.44 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.41 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.34 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.24 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.14 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.11 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.1 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.1 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.09 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 96.03 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 95.96 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.94 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.91 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 95.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.83 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.78 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 95.72 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.63 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.61 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.57 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 95.55 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.53 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.43 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.41 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.4 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.4 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 94.97 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.8 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.78 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.78 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.74 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.7 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 94.68 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.66 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.63 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.62 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.36 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.34 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 94.26 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 94.25 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.23 | |
| PLN02789 | 320 | farnesyltranstransferase | 94.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 93.86 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.85 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 93.85 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 93.84 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 93.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 93.57 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 93.44 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 93.37 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 93.24 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.11 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 93.06 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 93.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 92.75 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 92.67 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 92.65 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.53 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 92.21 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.84 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.79 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.56 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.5 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 91.28 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.17 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 90.93 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.62 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.21 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 90.18 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.4 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 89.27 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.89 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 87.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.76 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 87.74 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 87.63 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.58 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 87.3 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 87.25 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 87.22 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 86.98 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 86.71 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.59 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 86.46 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 86.17 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 85.92 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 85.91 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 85.34 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 85.27 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 84.5 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 83.92 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.63 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 83.51 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 83.37 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.22 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 83.16 | |
| COG2178 | 204 | Predicted RNA-binding protein of the translin fami | 82.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 82.8 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 82.47 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 81.96 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 81.95 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 81.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 81.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 81.57 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 81.5 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 81.16 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 80.93 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 80.64 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 80.47 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 80.46 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 80.28 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 80.08 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=301.03 Aligned_cols=280 Identities=16% Similarity=0.117 Sum_probs=188.8
Q ss_pred ccccchhhhhccCCCCCCchHHHHHHHhcCcCchHhHHHHHHhcC------------------------CcHHHHHHHHH
Q 021583 22 RNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLS------------------------NVKEEVYGALD 77 (310)
Q Consensus 22 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~ 77 (310)
+.+....++.........|++..++.++..+++.+.+..+...+. +..++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 334444455444444455666666666666666666555543222 34445666677
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 021583 78 SFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLS--KGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE 155 (310)
Q Consensus 78 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 155 (310)
+|.+.|+.||..+||.+|.+|++.|++++|.++|++|.+ .|+.||.++|++||.+|++.|++++|+++|++|.+.++
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi- 610 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI- 610 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-
Confidence 777777777777777777777777777777777777754 46677777777777777777777777777777777776
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-----CCCCccchh--
Q 021583 156 GTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK-----YPPPKWEYR-- 228 (310)
Q Consensus 156 ~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~-----~~p~~~~~~-- 228 (310)
.++..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.++|++ +.|+..+|+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555677777777777777777777777777777777777777777777777777777777765 345555544
Q ss_pred ------------------eeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhhh----
Q 021583 229 ------------------YIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESLEETEA---- 284 (310)
Q Consensus 229 ------------------~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---- 284 (310)
.|...++.|+..+|++||.+ +.|++++|.++++.|...|+.|+..+|+.++..+..
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 44456677788888888887 778888888888888888888888888888744333
Q ss_pred -hhHHHHHHhhhccccccc
Q 021583 285 -NTKELLEEADAISNESDI 302 (310)
Q Consensus 285 -~~~~l~~~a~~~~~~~~~ 302 (310)
.+.++++++...++.+|.
T Consensus 771 e~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCH
Confidence 566677777666666664
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=292.68 Aligned_cols=262 Identities=11% Similarity=0.129 Sum_probs=217.3
Q ss_pred chHHHHHHHhcCcCchHhHHHHHHhcC------------------------CcHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 021583 40 PRVWKARKRIGTISKSAKLVTCIKGLS------------------------NVKEEVYGALDSFIAWELEFPLITVKKAL 95 (310)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~m~~~~~~p~~~~~~~li 95 (310)
|+..+++.++..+++.+++..+...+. +..+.|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 677777777777777776666654332 56677888999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHHcC
Q 021583 96 KTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL--DHLEGTPRIFFDKMISIYYNRG 173 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~y~~li~~~~~~g 173 (310)
.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ .++. ++.++|++||.+|++.|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~-PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID-PDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999976 4663 67789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCccchh--------------------
Q 021583 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY-----PPPKWEYR-------------------- 228 (310)
Q Consensus 174 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~-----~p~~~~~~-------------------- 228 (310)
++++|+++|++|.+.|+.|+..+|++||.+|++.|++++|.++|++| .|+..+|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764 67766666
Q ss_pred eeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhh-----hhhHHHHHHhhhcccccc
Q 021583 229 YIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESLEETE-----ANTKELLEEADAISNESD 301 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-----~~~~~l~~~a~~~~~~~~ 301 (310)
.|.+.|+.++..+|++|+.+ +.|++++|.++++.|...|+.|+..+||.++.... +.+.++++++...++.+|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 45567888888899988888 88889999999988888888899999998883332 256677777766666666
Q ss_pred c
Q 021583 302 I 302 (310)
Q Consensus 302 ~ 302 (310)
.
T Consensus 754 ~ 754 (1060)
T PLN03218 754 T 754 (1060)
T ss_pred H
Confidence 4
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=267.63 Aligned_cols=229 Identities=14% Similarity=0.112 Sum_probs=200.5
Q ss_pred CchHHHHHHHhcCcCchHhHHHHHHhcC--------------------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 021583 39 YPRVWKARKRIGTISKSAKLVTCIKGLS--------------------NVKEEVYGALDSFIAWELEFPLITVKKALKTL 98 (310)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~ 98 (310)
.++...++.++..|++.+.+.+|...+. +..++|.++|++|.+.|+.||..||+++|.+|
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566667777777777777666654443 45667899999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKM 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a 178 (310)
++.|++++|.++++.|.+.|+.||..+|++||++|+++|++++|+++|++|.+. +.++||+||.+|++.|+.++|
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999754 447999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhH
Q 021583 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEV 256 (310)
Q Consensus 179 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a 256 (310)
.++|++|.+.|+.||..||+++|++|++.|.+++|.++|+.|. ...++.|+..+|+.+++. +.|++++|
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~---------~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS---------ENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH---------HhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999999999999976643 235778999999999999 99999999
Q ss_pred HhhhchhhcCCCCCchhhhhhhhhhhhh
Q 021583 257 ETTKNPNESSEEPEAAANLNESLEETEA 284 (310)
Q Consensus 257 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 284 (310)
.++++.| ++.|+..+|+.++..+..
T Consensus 482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 482 YAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 9888765 567899999999955543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=263.17 Aligned_cols=259 Identities=12% Similarity=0.105 Sum_probs=166.2
Q ss_pred CchHHHHHHHhcCcCchHhHHHHHHhcC--------------------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 021583 39 YPRVWKARKRIGTISKSAKLVTCIKGLS--------------------NVKEEVYGALDSFIAWELEFPLITVKKALKTL 98 (310)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~ 98 (310)
.|+...++.++..+++.+.+..|...+. +..++|.++|++|.+.|..|+..+|+.++.+|
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 3455555555555555555555543332 34455666666666555555555555554444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKM 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a 178 (310)
++.|+.+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|++|.+. +.++||+||.+|++.|++++|
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-----TTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhCCCHHHH
Confidence 444444444444444445555556666677777777777777777777777543 446777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-----CCCCccchheecc----------------CcccC
Q 021583 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK-----YPPPKWEYRYIKG----------------KRVRI 237 (310)
Q Consensus 179 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~-----~~p~~~~~~~~~~----------------~~~~~ 237 (310)
+++|++|.+.|+.||..||++++++|++.|++++|.++++. +.|+..+|+.+.. .-..+
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 77777777777777777777777777777777777777754 3555555552111 11246
Q ss_pred ChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhhh-----hhHHHHHHhhh-ccccccc
Q 021583 238 PAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESLEETEA-----NTKELLEEADA-ISNESDI 302 (310)
Q Consensus 238 ~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-----~~~~l~~~a~~-~~~~~~~ 302 (310)
|..+||+||.+ +.|+.++|.+++++|...|+.||..||+.++..+.. .+.++++++.. .++.++.
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 77888888888 888888888888888888888888888888844433 44455555532 3555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=258.09 Aligned_cols=246 Identities=11% Similarity=-0.026 Sum_probs=179.2
Q ss_pred hhhhccCCCCCCchHHHHHHHhcCcCchHhHHHHHHhcC--------------------CcHHHHHHHHHHHHHcCCCCC
Q 021583 28 VVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLS--------------------NVKEEVYGALDSFIAWELEFP 87 (310)
Q Consensus 28 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~m~~~~~~p~ 87 (310)
.+++..-.....|++..++.++..+++.+.+.++...+. +..++|.++|++|.+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 333333334456778888888888888888777765544 456788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..||+.+|.+|++.|+++.|.++++.|.+.|+.|+..+|++||++|+++|++++|.++|++|.+.+ .++||+||.
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d-----~vs~~~mi~ 463 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD-----VISWTSIIA 463 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-----eeeHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987643 368999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----------------------------------hcCCHHH
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ-----------------------------------KLGMLDK 212 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~-----------------------------------~~g~~~~ 212 (310)
+|++.|+.++|.++|++|.. +++||..||+++|.+|+ +.|++++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 99999999999999999875 57787777766655444 4444455
Q ss_pred HHHHHHhCCCCccchh--------------------eeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhh-cCCCC
Q 021583 213 YEKLKKKYPPPKWEYR--------------------YIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNE-SSEEP 269 (310)
Q Consensus 213 a~~l~~~~~p~~~~~~--------------------~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~-~~~~~ 269 (310)
|.++|+++.|+..+|+ .|...|+.||..+|++++.+ +.|++++|.++|+.|. ..|+.
T Consensus 543 A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 543 AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 5555544444444444 23334555555555555555 5555555555555554 44555
Q ss_pred Cchhhhhhhh
Q 021583 270 EAAANLNESL 279 (310)
Q Consensus 270 p~~~~~~~ll 279 (310)
|+..||+.++
T Consensus 623 P~~~~y~~lv 632 (857)
T PLN03077 623 PNLKHYACVV 632 (857)
T ss_pred CchHHHHHHH
Confidence 5555555554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=255.40 Aligned_cols=261 Identities=13% Similarity=0.064 Sum_probs=156.5
Q ss_pred cccccccchhhhhccCCCCCCchHHHHHHHhcCcCchHhHHHHHHhcCC------------------------cHHHHHH
Q 021583 19 KISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLSN------------------------VKEEVYG 74 (310)
Q Consensus 19 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~ 74 (310)
..++......++..... |++.+|+.++..+++.+.+.+++..+.. ....+.+
T Consensus 133 ~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 133 RFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred hCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 34556666677766543 5778888888888888888877322221 1112233
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 75 ALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 75 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
++..|.+.|+.||..+||+||.+|++.|+++.|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 34444444444444555555555555555555555555553 24555555555555555555555555555555555
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCc
Q 021583 155 EGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKR 234 (310)
Q Consensus 155 ~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~ 234 (310)
. |+.+||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.
T Consensus 285 ~-Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------------- 350 (857)
T PLN03077 285 D-PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME------------- 350 (857)
T ss_pred C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-------------
Confidence 2 44555555555555555555555555555555555555556666666666666666666655543
Q ss_pred ccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhh-----hhhHHHHHHhhhccccccc
Q 021583 235 VRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESLEETE-----ANTKELLEEADAISNESDI 302 (310)
Q Consensus 235 ~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-----~~~~~l~~~a~~~~~~~~~ 302 (310)
.++..+|++++.+ +.|+.++|.++++.|...|+.|+..+|+.++..+. +..+++.+++...+..+|.
T Consensus 351 -~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 351 -TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred -CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 3567778888888 78888888888888888888888888888884332 2455566666555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=90.91 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 157 TPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 157 ~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 206 (310)
|+.++||+||++|++.|++++|+++|++|++.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45678888888888888888888888888888888888888888888764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-14 Score=90.16 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE 135 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~ 135 (310)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888887764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-11 Score=111.36 Aligned_cols=196 Identities=14% Similarity=0.117 Sum_probs=147.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT----MGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~ty~~ll~~~~~~g~~~~A 142 (310)
+..+.|..+++++.+.. +.+..+++.++..|.+.|++++|.+.++.+.+.+-.++ ...|..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 44555677888877653 45677889999999999999999999999887653332 22456677788889999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPP 222 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p 222 (310)
.+.|+++.+..- .+...+..+...|.+.|++++|.++++++.+.+-.....+++.+..+|...|++++|...++++..
T Consensus 200 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAADP--QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999887642 344578888899999999999999999988753222246788889999999999999998776321
Q ss_pred CccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 223 PKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
. .|+...+..+... ..|++++|...+..+... .|+...++.++
T Consensus 278 ~------------~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 278 E------------YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred h------------CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 1 2333444555555 899999999999887665 48888888777
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-10 Score=105.03 Aligned_cols=189 Identities=11% Similarity=0.014 Sum_probs=145.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPL----ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A 142 (310)
+..++|...++.+.+.+-.++. ..+..+...+.+.|++++|...|+++.+.. ..+...+..+...|.+.|++++|
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHH
Confidence 4455677888888776533322 245667778899999999999999998753 33467888899999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPP 222 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p 222 (310)
.++|+++.+.+-. ....+++.+..+|++.|++++|.+.++.+.+. .|+...+..+...+.+.|++++|..++++...
T Consensus 234 ~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 234 IEALERVEEQDPE-YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HHHHHHHHHHChh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999976431 22347899999999999999999999999875 47777779999999999999999999876211
Q ss_pred CccchheeccCcccCChhhhhHhhhc-----cCCChhhHHhhhchhhcCCCCCc
Q 021583 223 PKWEYRYIKGKRVRIPAKPKYELDSA-----TEGKTNEVETTKNPNESSEEPEA 271 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~li~~-----~~g~~~~a~~~~~~m~~~~~~p~ 271 (310)
. .|+...++.++.. ..|...++...++.|...++.|+
T Consensus 311 ~------------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 311 R------------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred h------------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 1 3455555555544 25688888888888877665543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-08 Score=89.76 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
+-+..+|.++|.++|+--..++|.+++++-.....+.+..+||.+|.+-.-.-+ .++..+|....+. ||..|||+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~-Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT-PNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC-CchHhHHH
Confidence 335567777777777777777777777776666666666666666655442211 5566666666663 55556666
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 165 MISIYYNRGMHEK----MFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 165 li~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 212 (310)
++.+.++.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 6666666665544 34556666666666666666666666666655543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-08 Score=97.60 Aligned_cols=205 Identities=10% Similarity=-0.028 Sum_probs=140.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+++..+++++.+.. +.+...|..+...|.+.|++++|...|+.+.+.. ..+...+..+...|.+.|++++|.++|
T Consensus 581 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 581 GQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45566677777776544 5567788888888888899999999888887653 345677888888888888888888888
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCC
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPP 223 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~ 223 (310)
+++.+.. +.+..+|..+...+...|++++|.++++.+.+.+ ..+...+..+...+...|++++|.+.|++. .|+
T Consensus 659 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 659 KRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 8888754 3445688888888888888888888888887765 345677777888888888888888888752 233
Q ss_pred ccchhe--------------------eccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhh
Q 021583 224 KWEYRY--------------------IKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNES 278 (310)
Q Consensus 224 ~~~~~~--------------------~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 278 (310)
...+.. +. ...+.+...+..+... ..|++++|.+.++.+.... +.+...++.+
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 221110 00 0112234444444444 6777888887777776543 3344444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-10 Score=65.71 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 118 g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
|+.||.+|||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 666777777777777777777777777777663
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-08 Score=89.37 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCC-------------------CCCHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLE---NEKDWKRIIQVTKWMLSKGQ-------------------GRTMGTY 126 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~-------------------~p~~~ty 126 (310)
+..+.=+++.|++.|+..+...-..|+..-+ .++-+-.-.+.|-.|.+.|- .-+..||
T Consensus 131 vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~ 210 (625)
T KOG4422|consen 131 VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETV 210 (625)
T ss_pred cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhH
Confidence 4444566778888888877665444444332 22222222344444444332 3467899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 206 (310)
.+||.|+|+-...+.|.+++++-.....+ ....+||.+|.+-.-.. ..++..+|....++||..|||+++++..+
T Consensus 211 s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 211 SIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 99999999999999999999999988874 78889999998765433 38899999999999999999999999999
Q ss_pred cCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCCh-hhHHhhh----chhhcCCCCCchhhhhhhh
Q 021583 207 LGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKT-NEVETTK----NPNESSEEPEAAANLNESL 279 (310)
Q Consensus 207 ~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~-~~a~~~~----~~m~~~~~~p~~~~~~~ll 279 (310)
.|+++.|.+.+-+ +...|+.-|+.|...+|.-+|.. +.++. ..+..++ +.+..+...|-..+.|.-+
T Consensus 286 fg~F~~ar~aalq------il~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 286 FGKFEDARKAALQ------ILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred hcchHHHHHHHHH------HHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9999987666433 24568888999999999988877 55554 3444554 4445566666555555444
Q ss_pred ----hhhh-hhhHHHHHHhhhc
Q 021583 280 ----EETE-ANTKELLEEADAI 296 (310)
Q Consensus 280 ----~~~~-~~~~~l~~~a~~~ 296 (310)
.-|. ...++|.++-+.+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~l 381 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGL 381 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 2222 2566676666554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-08 Score=96.84 Aligned_cols=191 Identities=10% Similarity=0.024 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
..+.+...++++.+.+ +.+...+..+...|.+.|++++|.++|+.+.+.. +.+..++..+...+...|++++|.++++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455555555433 2344555666666666666666666666655432 2335555666666666666666666666
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCc
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPK 224 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~ 224 (310)
.+.+.+. .+...|..+...|.+.|++++|.+.|+.+...+ |+..++..+..++.+.|++++|.+.++++ .|+.
T Consensus 694 ~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 769 (899)
T TIGR02917 694 SLQKQHP--KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769 (899)
T ss_pred HHHhhCc--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 6655542 233445555555556666666666665555432 33344444555555555555555554432 1111
Q ss_pred c-chh--------------------eeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 225 W-EYR--------------------YIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 225 ~-~~~--------------------~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
. .+. .+... .+.+...++.+... ..|+ ++|.+++++....
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 1 000 11111 13455666666665 7777 8899998877653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.8e-09 Score=98.76 Aligned_cols=198 Identities=13% Similarity=0.029 Sum_probs=128.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------------CCCHHHHHHH
Q 021583 74 GALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ------------------------GRTMGTYFLL 129 (310)
Q Consensus 74 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------------------------~p~~~ty~~l 129 (310)
..+-.+...|+.|+.+||..+|.-||..|+.+.|- +|..|+-+.+ .|...||++|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 34557788899999999999999999999999988 8888874422 5677888899
Q ss_pred HHHHHhcCCHHH---HHHHHHHHHhc----CCCC----------------ChHH----------HHHHHHHHHHHcC---
Q 021583 130 LNALAEDGRLDE---AEELWTKIFLD----HLEG----------------TPRI----------FFDKMISIYYNRG--- 173 (310)
Q Consensus 130 l~~~~~~g~~~~---A~~~~~~m~~~----~~~~----------------~~~~----------~y~~li~~~~~~g--- 173 (310)
+.+|..+||+.- .++-+.....+ |... ++.. .|..++.-...+.
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999888654 33322222221 1110 0100 0222222221100
Q ss_pred --------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCCh
Q 021583 174 --------------MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPA 239 (310)
Q Consensus 174 --------------~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~ 239 (310)
...-.+++.+..+.-.-.|+..+|.+++++-..+|++|.|..++. .|++.|+.++.
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~----------emke~gfpir~ 239 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLY----------EMKEKGFPIRA 239 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHH----------HHHHcCCCccc
Confidence 011122222222221124888888888888888899998888854 46677777776
Q ss_pred hhhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhh
Q 021583 240 KPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETE 283 (310)
Q Consensus 240 ~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 283 (310)
+-+-.|+-+ .++.+.++..+..|+..|+.|+..|+.-.+..+-
T Consensus 240 HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 240 HYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred ccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 644444444 7788888888889999999998888877664333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-09 Score=61.49 Aligned_cols=34 Identities=9% Similarity=-0.017 Sum_probs=32.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 82 WELEFPLITVKKALKTLENEKDWKRIIQVTKWML 115 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 115 (310)
+|++||..|||+||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-06 Score=71.60 Aligned_cols=144 Identities=8% Similarity=0.040 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
...+++..+.. +.+...+..+...|...|++++|.+.++...+.. ..+...+..+...+...|++++|.+.|++..+.
T Consensus 51 ~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 51 KENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 45555544432 2335556666666666777777777776665442 234455666666666777777777777766654
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 153 HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 153 ~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
...+.....+..+...|...|++++|.+.+.+..+.. +.+...+..+...+...|++++|...+++
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 129 PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2211222345556666666777777777776665432 11345566666666677777777666655
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-08 Score=95.78 Aligned_cols=169 Identities=14% Similarity=0.071 Sum_probs=110.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH------------------------HHHHH
Q 021583 109 QVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR------------------------IFFDK 164 (310)
Q Consensus 109 ~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------------------------~~y~~ 164 (310)
.++-.|+..|+.||.+||..+|.-||..|+++.|- +|.-|+-+.+ +.+. .||.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL-pv~e~vf~~lv~sh~~And~Enpkep~aDtyt~ 88 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL-PVREGVFRGLVASHKEANDAENPKEPLADTYTN 88 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc-cccchhHHHHHhcccccccccCCCCCchhHHHH
Confidence 56778899999999999999999999999999998 8877775544 3222 36777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------CCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHhCC--
Q 021583 165 MISIYYNRGMHEKMFEIFADMEE-------LGVRPNVSIV--------------SMMGNAFQKLGMLDKYEKLKKKYP-- 221 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~-------~g~~p~~~ty--------------~~li~~~~~~g~~~~a~~l~~~~~-- 221 (310)
|.++|...|+...-+.+=+.|.. .|+---..-| .+.+.-....|.++.+++++..+.
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 77777777765542222221221 2321111111 123333445566666666653321
Q ss_pred ------------------CCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 222 ------------------PPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 222 ------------------p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
|-....+..+...-.++..++.+++++ .+|+.+.|..++.+|...|.+.+.-.|--|+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 111111122222235889999999999 9999999999999999999998887777777
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.72 E-value=8e-06 Score=68.09 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
....+..+...|...|++++|.+.++...+.. +.+...+..+...|...|++++|.+.+++..+..- .+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHH
Confidence 35677888899999999999999999987653 34567888899999999999999999999988653 3445788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHh
Q 021583 167 SIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYEL 245 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 245 (310)
..|...|++++|.+.++........| ....+..+..++...|++++|.+.+++..... +.+...+..+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~l 175 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-----------PQRPESLLEL 175 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------cCChHHHHHH
Confidence 99999999999999999998753333 34667788889999999999999987631100 1122333344
Q ss_pred hhc--cCCChhhHHhhhchhhcC
Q 021583 246 DSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 246 i~~--~~g~~~~a~~~~~~m~~~ 266 (310)
... ..|++++|.+.++.....
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 334 899999999999887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.8e-08 Score=56.09 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.5e-05 Score=74.93 Aligned_cols=146 Identities=11% Similarity=0.004 Sum_probs=106.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFP-LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+.|...+++..+.. |+ ..+|..+...+...|++++|...|+...+.. .-+..+|..+...+...|++++|...
T Consensus 345 g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 345 GKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred CCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555566666655443 43 5567777777888888888888888876552 33467777788888888888888888
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|++..+.. |.+...|..+-..+.+.|++++|+..|++..+. .| +...|+.+...+...|++++|.+.|++
T Consensus 422 ~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 422 YQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88887654 234456777888888888888888888887653 34 367788888888888888888888876
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-05 Score=76.35 Aligned_cols=149 Identities=10% Similarity=-0.088 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 021583 70 EEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKI 149 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m 149 (310)
++|...+++..+.+ +-+..++..+-..+...|++++|...|+...+.+ +.+...+..+-..|...|++++|...+++.
T Consensus 321 ~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 321 IKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44556666655554 3357778888888889999999999999988764 334677888889999999999999999999
Q ss_pred HhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 150 FLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 150 ~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
.+..- .+...+..+...+...|++++|...+++..+.. .|+ ...+..+..+|...|+.++|...++++.+.
T Consensus 399 l~l~P--~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 399 LKLDP--TRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HhcCC--CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 88753 332334445556777899999999999987653 353 455777888899999999999998875433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.9e-05 Score=73.77 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDE----AEE 144 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~----A~~ 144 (310)
.++|...++.+.+..-.++...+..+...+.+.|++++|...|+...... .-+...+..+-..|...|+.++ |+.
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 34445555555444322333344444556666677777777776666442 2345556666666667777664 566
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|++..+.. |.+...+..+...+.+.|++++|...+++..+. .|+ ...+..+..+|.+.|++++|...|++
T Consensus 272 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 272 HWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666542 233346666777777777777777777766653 343 45555666667777777777776654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00014 Score=71.08 Aligned_cols=148 Identities=8% Similarity=0.011 Sum_probs=107.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...++++.... +-+...+..+...+.+.|++++|.+.++...+. -..+...+..+...+...|+.++|...+
T Consensus 90 g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 56667788888877765 345667778888888889999999999888765 2334677788888888899999999988
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+++....- .+...+..+ ..+.+.|++++|..+++.+....-.++...+..+..++...|++++|...+++
T Consensus 168 ~~~~~~~P--~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 168 RTQAQEVP--PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred HHHHHhCC--CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88766543 222333333 34778888888888888877654334445556666778888888888888875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.6e-05 Score=73.57 Aligned_cols=181 Identities=12% Similarity=0.012 Sum_probs=139.9
Q ss_pred cHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 021583 68 VKEEVYGALDSFIAWE-LEF-PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEE 144 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~ 144 (310)
..+++...++...+.+ ..| ....|+.+-..+...|++++|...|+...+. .|+ ..+|..+...+...|++++|..
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3556677788877654 334 4567888888889999999999999998765 354 5688889999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
.|++..+.. +.+...|..+-..|...|++++|.+.|+...+. .| +...+..+...+.+.|++++|...|++....
T Consensus 387 ~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 387 DFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999998764 344568999999999999999999999998774 45 4677888899999999999999998763110
Q ss_pred ccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 224 KWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
.+.+...++.+-.. ..|++++|.+.++.-..
T Consensus 463 -----------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 463 -----------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred -----------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 01223344444444 78999999988876544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-06 Score=77.02 Aligned_cols=180 Identities=11% Similarity=0.035 Sum_probs=95.6
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
..+++.+++.+..+. .++...+..++..+.+.++++++.++++..... ....+...|..+...+.+.|+.++|++++
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344445555443332 245566777888888888888888888887643 34567778888888888889999999888
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccc
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWE 226 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~ 226 (310)
++..+.. |.+....+.++..+...|+.+++.+++....+.. ..|...+..+..+|...|+.++|..+|++..
T Consensus 170 ~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~----- 241 (280)
T PF13429_consen 170 RKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL----- 241 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH-----
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc-----
Confidence 8888764 3445578888888888888888888888877654 3455667788888888889999888876621
Q ss_pred hheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchh
Q 021583 227 YRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPN 263 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m 263 (310)
.. -+.|......+.+. ..|+.++|.++....
T Consensus 242 -~~-----~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 242 -KL-----NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HH-----STT-HHHHHHHHHHHT---------------
T ss_pred -cc-----ccccccccccccccccccccccccccccccc
Confidence 00 02344455555566 788888887776543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-07 Score=52.90 Aligned_cols=33 Identities=21% Similarity=0.530 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 192 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 192 (310)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777776
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.6e-07 Score=51.24 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT 122 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 122 (310)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.5e-07 Score=50.46 Aligned_cols=29 Identities=34% Similarity=0.650 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666665554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.9e-07 Score=50.78 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGR 121 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 121 (310)
+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-05 Score=70.33 Aligned_cols=148 Identities=15% Similarity=0.114 Sum_probs=104.6
Q ss_pred CcHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 021583 67 NVKEEVYGALDSFIAW-ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEE 144 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~ 144 (310)
+..+++.++++..... ..+.+...|..+...+.+.|+.++|.+.++...+. .| |....+.++..+...|+.+++.+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 4455667777776653 34567788999999999999999999999998876 35 47788899999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+++...+..- .+...|..+-.+|...|+.++|...++...+.. +-|......+..++...|+.++|.++.++
T Consensus 202 ~l~~~~~~~~--~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 202 ALKRLLKAAP--DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHH-H--TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHHHCc--CHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 9998887752 333578999999999999999999999987643 23788889999999999999999998765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.7e-05 Score=68.87 Aligned_cols=177 Identities=18% Similarity=0.167 Sum_probs=105.2
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH
Q 021583 83 ELEFP-LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI 160 (310)
Q Consensus 83 ~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 160 (310)
.+.|+ .+.+..+-..|..+|.+|.|.+.|+...+. .|+ ...|+.|-+++-..|++.+|+.++.+..+-.- ...-
T Consensus 280 ~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p--~had 355 (966)
T KOG4626|consen 280 NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP--NHAD 355 (966)
T ss_pred hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC--ccHH
Confidence 44453 455666666677777777777777765544 344 46677777777777777777777776665532 1223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCcc--------chh
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPKW--------EYR 228 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~~--------~~~ 228 (310)
+.|.|-+.|...|.+++|..+|..-.+ +.|+ ...++.|...|-..|++++|...+++ ++|+-. +|.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH
Confidence 566677777777777777777766554 4454 35666777777777777777776664 333321 111
Q ss_pred e-----------eccCcccCC-hhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 229 Y-----------IKGKRVRIP-AKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 229 ~-----------~~~~~~~~~-~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
. .+.-.+.|. ....+.|-+. ..|++++|...++.-+.
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 1 111111121 2233344444 78999999887765543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00015 Score=62.63 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=120.4
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCCH
Q 021583 63 KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRT--MGTYFLLLNALAEDGRL 139 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~--~~ty~~ll~~~~~~g~~ 139 (310)
-.+++.+++|.+.|-+|.+.. +-+..+--+|-+.|.+.|..|+|+++.+.+.++ +..-+ ..+.-.|-.-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 445677888999999998854 345566678888899999999999999998865 22222 22334466778899999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV----SIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~ 215 (310)
|.|+.+|..+.+.+- .-...--.|+.-|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....++|.|..
T Consensus 124 DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999998665 22346888999999999999999999999887655542 567777777778899999998
Q ss_pred HHHh
Q 021583 216 LKKK 219 (310)
Q Consensus 216 l~~~ 219 (310)
++++
T Consensus 202 ~l~k 205 (389)
T COG2956 202 LLKK 205 (389)
T ss_pred HHHH
Confidence 8865
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-05 Score=71.59 Aligned_cols=216 Identities=11% Similarity=0.051 Sum_probs=144.2
Q ss_pred CchHHHHHH-HhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 021583 39 YPRVWKARK-RIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLS- 116 (310)
Q Consensus 39 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~- 116 (310)
.+.+-.... +...+...+.+.+|+..+. +|..++++......+--..+++.|-..|++.|++++|...++...+
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~----~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYE----EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI 312 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHH----HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 344444444 2223555566666644443 3444444444444333356788888999999999998888876432
Q ss_pred --C--C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 021583 117 --K--G-QGRTM-GTYFLLLNALAEDGRLDEAEELWTKIFLD-----HLEGTPR-IFFDKMISIYYNRGMHEKMFEIFAD 184 (310)
Q Consensus 117 --~--g-~~p~~-~ty~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~-~~y~~li~~~~~~g~~~~a~~l~~~ 184 (310)
. | ..|.+ ..++.+...|+..+++++|..++.+..+. |...+.. -+|+.|-..|-..|++++|+++++.
T Consensus 313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 2 2 12333 44566788889999999999998765543 2211122 2899999999999999999999998
Q ss_pred HHHC----C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcc--cCChhhhhHhhhc--cCCCh
Q 021583 185 MEEL----G--VRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRV--RIPAKPKYELDSA--TEGKT 253 (310)
Q Consensus 185 m~~~----g--~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~--~~~~~~~~~li~~--~~g~~ 253 (310)
.... + ..+. ...++.|-..|.+.+..++|.++|.+.. +.++..|. +....+|..|... +.|++
T Consensus 393 ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~------~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 393 AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK------DIMKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH------HHHHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 7532 1 2233 4778999999999999999999997721 11122222 3345677777777 99999
Q ss_pred hhHHhhhchhh
Q 021583 254 NEVETTKNPNE 264 (310)
Q Consensus 254 ~~a~~~~~~m~ 264 (310)
+.|+++.....
T Consensus 467 e~a~~~~~~~~ 477 (508)
T KOG1840|consen 467 EAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHH
Confidence 99999886554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00045 Score=66.36 Aligned_cols=179 Identities=7% Similarity=-0.108 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 70 EEVYGALDSFIAWELEFP-LITVKKALKTLE---------NEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRL 139 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~-~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~ 139 (310)
+.|...+++..+.. |+ ...|..+-.+|. ..+++++|...++...+.. +-+..++..+-..+...|++
T Consensus 278 ~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 45667777666544 43 445555554443 2345889999999887663 34677888888889999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
++|...|++..+.+ |.+...|..+-..|...|++++|...++...+. .|+. ..+..+...+...|++++|...++
T Consensus 355 ~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998875 344457888999999999999999999998875 3542 233344555677899999999986
Q ss_pred hCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 219 KYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 219 ~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
+.. ....+-+...+..+-.. ..|+.++|...+.+...
T Consensus 431 ~~l----------~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 431 ELR----------SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHH----------HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 631 00000111122222222 78999999999877643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00034 Score=69.84 Aligned_cols=186 Identities=8% Similarity=-0.062 Sum_probs=127.8
Q ss_pred CcHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 021583 67 NVKEEVYGALDSFIAWELE-FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR---TMGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~ty~~ll~~~~~~g~~~~A 142 (310)
+..++|...++++.+.+-+ |+.. -..+...|...|++++|..+|+......-.. ....+..|..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 3455667888888776532 3321 1224668888999999999999877543111 135567777788999999999
Q ss_pred HHHHHHHHhcCC----------CCCh-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 021583 143 EELWTKIFLDHL----------EGTP-R--IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 143 ~~~~~~m~~~~~----------~~~~-~--~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 209 (310)
.+.++++.+..- ..++ . ..+..+...+...|+.++|+++++++.... +-+...+..+...+...|+
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 999998887531 0111 1 245667778888999999999999987642 2246788888889999999
Q ss_pred HHHHHHHHHh---CCCCccchheeccCcccCChhhhhHhhhccCCChhhHHhhhchhhcC
Q 021583 210 LDKYEKLKKK---YPPPKWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNESS 266 (310)
Q Consensus 210 ~~~a~~l~~~---~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~~ 266 (310)
.++|++.+++ ..|+. +......++..-..|++++|+..++.+...
T Consensus 409 ~~~A~~~l~~al~l~Pd~------------~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 409 PRAAENELKKAEVLEPRN------------INLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHhhCCCC------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999876 23441 222223333222788999999999888663
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00073 Score=68.65 Aligned_cols=141 Identities=6% Similarity=-0.048 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
++...+.+..... |+......+...+.+.|++++|...|+.+... .|+...+..+...+.+.|+.++|.+.+++..
T Consensus 494 eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 494 VALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444433322 44333333334445677777777777765433 3344445555666667777777777777766
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+..- .....+..+...+.+.|++++|...+++..+. .|+...|..+..++.+.|+.++|...+++
T Consensus 570 ~l~P--~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 570 QRGL--GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred hcCC--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6532 22222333333334457777777777766543 35666666777777777777777777654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-06 Score=49.13 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
||++||++|++.|++++|.++|++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777766653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00022 Score=61.62 Aligned_cols=204 Identities=12% Similarity=0.132 Sum_probs=140.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT----MGTYFLLLNALAEDGRLDEAE 143 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~ty~~ll~~~~~~g~~~~A~ 143 (310)
..++|..+|..+.+.+ ..-..+...|+..|-+..+|++|.++-..+.+.+-++. ...|+-|-..+....+++.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3444578888777755 34466788999999999999999999998887765554 345667778888889999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 144 ELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
..+++-.+.+- ..+..--.+=+.+...|+++.|.+.++...+.+...-..+...|..||...|+.++...++.++...
T Consensus 201 ~~l~kAlqa~~--~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQADK--KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhCc--cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99998887653 2222333444567789999999999999998876655688899999999999999998887663211
Q ss_pred ccchheeccCcccCChhhhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhhhhh
Q 021583 224 KWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETEANT 286 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 286 (310)
+ .|..+-..++ -+++...|. +.|..++.+-... .|+...|..++...-+++
T Consensus 279 ---~-----~g~~~~l~l~-~lie~~~G~-~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 279 ---N-----TGADAELMLA-DLIELQEGI-DAAQAYLTRQLRR--KPTMRGFHRLMDYHLADA 329 (389)
T ss_pred ---c-----CCccHHHHHH-HHHHHhhCh-HHHHHHHHHHHhh--CCcHHHHHHHHHhhhccc
Confidence 0 0111111111 223333343 3444444443333 389999999985554433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00046 Score=63.46 Aligned_cols=210 Identities=8% Similarity=-0.041 Sum_probs=124.0
Q ss_pred hcCCcHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 64 GLSNVKEEVYGALDSFIAWELEFPLI--TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDE 141 (310)
Q Consensus 64 ~~~~~~~~~~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~ 141 (310)
.-.+..+.+...+.++.+.. |+.. ..-.....+...|+++.|...++...+.. +-+...+..+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 34466777788888776543 4332 22233567788889999999888887664 4456788888888888899999
Q ss_pred HHHHHHHHHhcCCCCChH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 142 AEELWTKIFLDHLEGTPR------IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 142 A~~~~~~m~~~~~~~~~~------~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
|.+++..+.+.+...+.. .+|..++.-.....+.+...++++.+.+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 998888888776532221 13334444444444445555555554322 12345555666666666666666666
Q ss_pred HHHhC---CCCcc---chheeccC--------------cccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchh
Q 021583 216 LKKKY---PPPKW---EYRYIKGK--------------RVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAA 273 (310)
Q Consensus 216 l~~~~---~p~~~---~~~~~~~~--------------~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~ 273 (310)
++++. .++.. .|..+... ..+.|.....++-.. +.|++++|.+.++...... |+..
T Consensus 285 ~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~ 362 (398)
T PRK10747 285 IILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAY 362 (398)
T ss_pred HHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHH
Confidence 66541 11111 11111110 112233333333333 8999999999999887654 6666
Q ss_pred hhhhhh
Q 021583 274 NLNESL 279 (310)
Q Consensus 274 ~~~~ll 279 (310)
.+-.+-
T Consensus 363 ~~~~La 368 (398)
T PRK10747 363 DYAWLA 368 (398)
T ss_pred HHHHHH
Confidence 644333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00036 Score=70.83 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=129.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...++++... +|+...+..+...+.+.|+++.|...|+...+.. ..+...+..+...+.+.|++++|...+
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4566667777765443 4445556677788889999999999999888664 223333334444555669999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh---CCC
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK---YPP 222 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~---~~p 222 (310)
++..+.. |+...|..+-..+.+.|+.++|+..++...+. .|+ ...++.+-.++...|+.++|..++++ ..|
T Consensus 600 ~~AL~l~---P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 600 TRSLNIA---PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9988764 34557889999999999999999999998774 464 57788888899999999999999875 233
Q ss_pred CccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 223 PKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
+ +...+..+-.+ ..|+.++|+..++.....
T Consensus 675 ~--------------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 675 D--------------DPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred C--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 23333344444 889999999888777543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0023 Score=58.93 Aligned_cols=193 Identities=8% Similarity=-0.040 Sum_probs=130.7
Q ss_pred HHHHHHh-cCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHH
Q 021583 58 LVTCIKG-LSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYF--LLLNALA 134 (310)
Q Consensus 58 ~~~~l~~-~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~--~ll~~~~ 134 (310)
+.+.+.. ..+..+.+.+.+..-.+..-. ....|........+.|+++.|.+.+.++.+. .|+...+. .....+.
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 3344433 347777777766654443211 2333444445557899999999999999865 46654333 4467888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhc
Q 021583 135 EDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV-------SIVSMMGNAFQKL 207 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~ty~~li~~~~~~ 207 (310)
..|+.++|.+.++++.+.. |.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++......
T Consensus 165 ~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998876 345568999999999999999999999999988766433 2444555555556
Q ss_pred CCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 208 GMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 208 g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
.+.+...++++.+... .+.+......+... ..|+.++|++.+......
T Consensus 243 ~~~~~l~~~w~~lp~~-----------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-----------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred cCHHHHHHHHHhCCHH-----------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6667777777664311 12234444445555 778888888887766653
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.9e-05 Score=54.51 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG--------MHEKMFEIFADMEELGVRPNVSIVS 198 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g--------~~~~a~~l~~~m~~~g~~p~~~ty~ 198 (310)
...|..+...+++...-.+|+.+++.|+..|+..+||.++.+.++.. ++-+++.+|.+|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 33444444445555555555555555553233345555555555432 2344667788888888888888888
Q ss_pred HHHHHHHh
Q 021583 199 MMGNAFQK 206 (310)
Q Consensus 199 ~li~~~~~ 206 (310)
.++.++.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.9e-05 Score=70.27 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=121.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFP-LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+-|...+++..+. +|+ ...||.|.+++-..|+..+|.+.|....... ..-..+.+.|-+.|...|.+++|..+
T Consensus 300 G~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHH
Confidence 4566677777765554 455 6789999999999999999999999877552 23357889999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|..-.+-.- .=...+|.|-..|-+.|+.++|...|++..+ ++|+. ..|+.+-..|-..|+++.|.+.+.+
T Consensus 377 y~~al~v~p--~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 377 YLKALEVFP--EFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred HHHHHhhCh--hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 998876532 2234899999999999999999999999765 78884 8899999999999999999999987
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=66.51 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=108.7
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 021583 80 IAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK--GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT 157 (310)
Q Consensus 80 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 157 (310)
...+.+.+...+..+++.+....+.+.+..++...+.. ....-..|..++|+.|.+.|..++++++++.=...|+ -+
T Consensus 58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-F~ 136 (429)
T PF10037_consen 58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-FP 136 (429)
T ss_pred HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-CC
Confidence 34566778888889999999988999999999998855 3333445667999999999999999999999999999 48
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 158 PRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 158 ~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 207 (310)
|..+||.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 137 D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 137 DNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88899999999999999999999999998887778888888888887776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0013 Score=60.68 Aligned_cols=179 Identities=11% Similarity=0.016 Sum_probs=84.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHH-HHHHHH---H
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFD-KMISIY---Y 170 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~-~li~~~---~ 170 (310)
...+...|+++.|.+.++.+.+.. +-+..+...+...|...|++++|.+++..+.+.+.. .+ ..+. .-..++ .
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~-~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DD-EEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CH-HHHHHHHHHHHHHHH
Confidence 444445555555555555555442 223344555555555555555555555555555431 11 1111 001111 1
Q ss_pred HcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccc-----hh---eecc----
Q 021583 171 NRGMHEKMFEIFADMEELG---VRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWE-----YR---YIKG---- 232 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g---~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~-----~~---~~~~---- 232 (310)
..+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++. .|+... +. .+..
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 1111122222222222211 1125666777778888899999999988762 344431 11 1110
Q ss_pred ---------CcccCC-h--hhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhh
Q 021583 233 ---------KRVRIP-A--KPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLN 276 (310)
Q Consensus 233 ---------~~~~~~-~--~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 276 (310)
....|+ . ....++-.. +.|++++|.++++.-......|+...+.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 011222 2 222222222 8899999999998533333345444333
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0036 Score=55.61 Aligned_cols=215 Identities=12% Similarity=0.080 Sum_probs=142.2
Q ss_pred HHHHH-HhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 58 LVTCI-KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED 136 (310)
Q Consensus 58 ~~~~l-~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~ 136 (310)
..+++ +...+...+|.+.+.+..+.+- -....|.....+--+.|+.+.+..++.+..+.--.++...+-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 33443 4455777778888877666663 335567777777788899999999888877664456667777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------------------
Q 021583 137 GRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVR------------------------- 191 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~------------------------- 191 (310)
|+.+.|..-.+++.+.+- .+...-.....+|.+.|++.....++..|.+.|.-
T Consensus 167 ~d~~aA~~~v~~ll~~~p--r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 167 RDYPAARENVDQLLEMTP--RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCchhHHHHHHHHHHhCc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777777653 34456777777777777777777777777766622
Q ss_pred ----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchh----------------------eeccC
Q 021583 192 ----------------PNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYR----------------------YIKGK 233 (310)
Q Consensus 192 ----------------p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~----------------------~~~~~ 233 (310)
-+...-.+++.-+..+|+.++|.++.++..+..+.-+ .++..
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 2233334566667788888888888764211111111 22223
Q ss_pred cccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 234 RVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 234 ~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+..| ..+.+|-.- +.+.|.+|.++++.-... .|+..+++.+=
T Consensus 325 ~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la 368 (400)
T COG3071 325 PEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELA 368 (400)
T ss_pred CCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHH
Confidence 3333 444444444 899999999999955544 48888888876
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0035 Score=57.90 Aligned_cols=187 Identities=12% Similarity=0.004 Sum_probs=123.6
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCH
Q 021583 63 KGLSNVKEEVYGALDSFIAWELEFP-LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM--GTYFLLLNALAEDGRL 139 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~ty~~ll~~~~~~g~~ 139 (310)
....+..+.|.+.+.+..+. .|+ ...+-.......+.|+++.|.+.+....+.. |+. ..--+....+...|+.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 44457777888887765554 344 4445555677788899999999999987553 443 3444468888899999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---H----hcCCHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF---Q----KLGMLDK 212 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~---~----~~g~~~~ 212 (310)
++|.+.++++.+.. |.+...+..+...|...|++++|.+++..+.+.++.+.......-..++ . .....+.
T Consensus 170 ~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 170 HAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999986 3444678899999999999999999999999987653332211111211 2 2222334
Q ss_pred HHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 213 YEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 213 a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
..++++... . ..+.+...+..+... ..|+.++|.+.+++....
T Consensus 248 L~~~~~~~p-~----------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 248 LLNWWKNQP-R----------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHCC-H----------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 444443321 0 001244444445555 777788888777766554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00049 Score=64.36 Aligned_cols=207 Identities=20% Similarity=0.200 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK-----GQ-GRTMGTY-FLLLNALAEDGRLDEAEELWTKIFLD-----HLE 155 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~ty-~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~ 155 (310)
..++..|...|...|+++.|..++++-... |. .|.+.+. +.+-..|...+++++|..+|+++... |-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 457777999999999999999999986533 32 2344333 33667888999999999999988754 332
Q ss_pred CChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH---C--CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccch
Q 021583 156 GTPR-IFFDKMISIYYNRGMHEKMFEIFADMEE---L--GVR-PNV-SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEY 227 (310)
Q Consensus 156 ~~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~---~--g~~-p~~-~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~ 227 (310)
++.+ .+++.|-..|++.|++++|...+++-.+ + |.. |+. .-++.+...|+..+++++|..++++ ....|
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~---al~i~ 355 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK---ALKIY 355 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH---HHHHH
Confidence 2333 3899999999999999999988877542 1 222 232 5567777889999999999999875 22222
Q ss_pred heeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc----CC---CCCchhhhhhhhhhhhh-----hhHHHHHHh
Q 021583 228 RYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES----SE---EPEAAANLNESLEETEA-----NTKELLEEA 293 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~----~~---~~p~~~~~~~ll~~~~~-----~~~~l~~~a 293 (310)
....+..-..-..+++.|-+. ..|++++|++++..... .+ ..-....+|.+=..... ++.++..++
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 211111111234456666666 89999999999965432 11 11112223333322222 566777777
Q ss_pred hhcc
Q 021583 294 DAIS 297 (310)
Q Consensus 294 ~~~~ 297 (310)
-.|.
T Consensus 436 ~~i~ 439 (508)
T KOG1840|consen 436 KDIM 439 (508)
T ss_pred HHHH
Confidence 7765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0011 Score=56.22 Aligned_cols=147 Identities=12% Similarity=0.058 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHHHhc--------CCH
Q 021583 72 VYGALDSFIAWEL-EF-PLITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTM-GTYFLLLNALAED--------GRL 139 (310)
Q Consensus 72 ~~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~ty~~ll~~~~~~--------g~~ 139 (310)
+...+++.....- .| ...++..+...|.+.|+++.|...++.+.+.. -.|.. .++..+-..+... |+.
T Consensus 52 A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 131 (235)
T TIGR03302 52 AIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA 131 (235)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHH
Confidence 3666666655431 11 23467788899999999999999999988542 12221 2444444455543 778
Q ss_pred HHHHHHHHHHHhcCCCCChHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFF-----------------DKMISIYYNRGMHEKMFEIFADMEELGV-RP-NVSIVSMM 200 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y-----------------~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p-~~~ty~~l 200 (310)
++|.+.|++..+..-. +...+ -.+-..|.+.|++++|...++......- .| ....+..+
T Consensus 132 ~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l 209 (235)
T TIGR03302 132 REAFEAFQELIRRYPN--SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARL 209 (235)
T ss_pred HHHHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHH
Confidence 9999999999877432 21122 1345567889999999999999886521 23 35788899
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 021583 201 GNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 201 i~~~~~~g~~~~a~~l~~~~ 220 (310)
..++...|+.++|...++.+
T Consensus 210 ~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 210 VEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0027 Score=66.42 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=98.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHH------------HHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG-RTMGTYF------------LLLNAL 133 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~ty~------------~ll~~~ 133 (310)
+..+.|...+++..+.. +-+...+..+-..|.+.|++++|...|+...+..-. +....+. .+-..+
T Consensus 283 g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 55667788888777654 336778888889999999999999999987754321 1211121 123456
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 021583 134 AEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~ 212 (310)
.+.|++++|++.|++..+.. |.+...+..+-..|...|++++|++.|++..+. .|+ ...+..+...|. .++.++
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHH
Confidence 78899999999999888764 344457778888899999999999999988764 243 444444444442 233444
Q ss_pred HHHHHH
Q 021583 213 YEKLKK 218 (310)
Q Consensus 213 a~~l~~ 218 (310)
|..+++
T Consensus 437 A~~~l~ 442 (1157)
T PRK11447 437 ALAFIA 442 (1157)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0013 Score=65.63 Aligned_cols=186 Identities=9% Similarity=-0.011 Sum_probs=138.4
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG-----QGRTMGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~ty~~ll~~~~~~g~~~~A 142 (310)
...+|.+.++.+...+.+....+--.+..+|...+++++|..+|....... ..++......|..+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 344567888889888877667788899999999999999999999987542 234555578899999999999999
Q ss_pred HHHHHHHHhcCC----------C-C-ChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 021583 143 EELWTKIFLDHL----------E-G-TPRI-FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 143 ~~~~~~m~~~~~----------~-~-~~~~-~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 209 (310)
..+++++.+..- + + ++-. .+..++..+...|+..+|+++++++.... +-|......+.+.+...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 999999987310 0 0 1111 35556778889999999999999997642 3378889999999999999
Q ss_pred HHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 210 LDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 210 ~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
.++|++.++...-. -+.+..+......+ ..|++.+|+..++....
T Consensus 466 p~~A~~~~k~a~~l-----------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 466 PRKAEQELKAVESL-----------APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhhh-----------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999998652100 02223333334444 78999999988876644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0035 Score=62.58 Aligned_cols=197 Identities=11% Similarity=0.086 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHH-cCCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 021583 70 EEVYGALDSFIA-WELEFP-LI----TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAE 143 (310)
Q Consensus 70 ~~~~~~~~~m~~-~~~~p~-~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~ 143 (310)
+.+..-++.+.. .+-.|. .. ..-=.+-++.+.|+++++.+.|+.+...|.+...++-..+.++|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 445666666554 233242 22 222346677889999999999999999998877789999999999999999999
Q ss_pred HHHHHHHhcCCC----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCC--H-HHHHHHHHHHH
Q 021583 144 ELWTKIFLDHLE----GTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGV-----------RPN--V-SIVSMMGNAFQ 205 (310)
Q Consensus 144 ~~~~~m~~~~~~----~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~-----------~p~--~-~ty~~li~~~~ 205 (310)
.+++++...... +++......|..+|...+++++|..+++.+.+.-- .|+ - ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 999999765421 12333468899999999999999999999987311 132 2 34556777789
Q ss_pred hcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 206 KLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 206 ~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
..|++++|++.++++. . .-+-|..+...+-+. ..|...+|++.++..+.- .|+........
T Consensus 428 ~~gdl~~Ae~~le~l~-----~------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~ 490 (822)
T PRK14574 428 ALNDLPTAQKKLEDLS-----S------TAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQ 490 (822)
T ss_pred HcCCHHHHHHHHHHHH-----H------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHH
Confidence 9999999999998741 0 012233333333333 799999999999666554 46544444444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00035 Score=51.19 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhcCCCCChHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQ-GRTMGTYFLLLNALAEDGR--------LDEAEELWTKIFLDHLEGTPRI 160 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~g~--------~~~A~~~~~~m~~~~~~~~~~~ 160 (310)
|-...|..+...+++.....+|+.++..|+ .|++.+|+.++.+.++..- +-+.+.+++.|...+++ |+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK-P~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK-PNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC-CcHH
Confidence 444556667777999999999999999999 8999999999998886532 44678889999999985 7778
Q ss_pred HHHHHHHHHHH
Q 021583 161 FFDKMISIYYN 171 (310)
Q Consensus 161 ~y~~li~~~~~ 171 (310)
+||.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00082 Score=61.11 Aligned_cols=123 Identities=14% Similarity=0.131 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
-...|+..+...++++.|.++|+++.+.. |+. ...|.+.+...++-.+|.+++++..+.. |.+....+.-...|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34566677777899999999999999775 654 4458888888999999999999888653 24445777778889
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 170 YNRGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
.+.++.+.|.++.+++.+ +.|+. .+|..|..+|...|+++.|+..++.+
T Consensus 245 l~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999887 56876 69999999999999999999999865
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0012 Score=68.96 Aligned_cols=132 Identities=9% Similarity=0.000 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
+.+...+..+-..+.+.|++++|.+.|+...+.. +-+...+..+...|...|+.++|++.++...+.. +.+...+..
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~~~~ 676 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNTQRR 676 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 4455667788888999999999999999988662 3467888899999999999999999999887653 233446777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELGV--RP---NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g~--~p---~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+...+...|++++|.++++......- .| +...+..+...+...|+.++|...|++
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888999999999999999876432 22 235666677888999999999999876
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0018 Score=49.61 Aligned_cols=106 Identities=8% Similarity=-0.027 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
......+...+.+.|++++|.+.|+.....+ ..+...+..+-..|.+.|++++|..+|++..+.+- .+...|..+-.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHH
Confidence 4456667777788888888888888877653 34667777888888888888888888888776643 44456777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVS 198 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 198 (310)
.|...|++++|.+.|+...+. .|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 888888888888888877763 35544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0008 Score=63.21 Aligned_cols=175 Identities=13% Similarity=0.081 Sum_probs=123.8
Q ss_pred ccCCCCCCchHHHHHHHhcCcCchHhHHHHHHhcC-----------------------CcHHHHHHHHHHHHHcCCCCCH
Q 021583 32 ARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLS-----------------------NVKEEVYGALDSFIAWELEFPL 88 (310)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~m~~~~~~p~~ 88 (310)
+....+..|.-| -...++|+-.++.+.||+.+. +..+.|...| +..+.+|.
T Consensus 413 Li~~~~~sPesW--ca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f----r~Al~~~~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESW--CALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF----RKALGVDP 486 (638)
T ss_pred HHhhCCCCcHHH--HHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH----HhhhcCCc
Confidence 334455555544 455667888888888876555 1222233322 23455566
Q ss_pred HHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 89 ITVKK---ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 89 ~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
..||+ |-..|.|+++++.|.-.|+...+.+ .-+.+....+...+-+.|+.|+|+++|++.....- .+..+---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~--kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP--KNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC--CCchhHHHH
Confidence 66655 4567889999999999998877664 44667777788888999999999999998876653 343333334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
...+...++.++|+..++++++ +.|+ ...|-.+...|.+.|+.+.|+..|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 5555668899999999999987 5676 478888889999999999998876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0043 Score=54.65 Aligned_cols=126 Identities=12% Similarity=-0.073 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
..|..+-..|.+.|++++|...|+...+.. ..+...|+.+-..|...|++++|.+.|++..+.. |.+..+|..+-..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 456666777888888888888888877653 3356888888888888888888888888887653 3344577778888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+...|++++|.+.++...+. .|+..........+...++.++|...|++
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888888888888887763 35433222333334556778888888854
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0013 Score=51.43 Aligned_cols=100 Identities=11% Similarity=-0.009 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
.+..+-..+...|++++|...|+...... ..+...|..+-..+.+.|++++|...|++..+.. |.+...|..+-.++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l 102 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 35556777788899999999999877653 3467888888888999999999999999988754 34556888888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 170 YNRGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
.+.|+.++|.+.|+...+. .|+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCC
Confidence 9999999999999887763 4543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0034 Score=51.99 Aligned_cols=176 Identities=12% Similarity=0.044 Sum_probs=125.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
..-+++..+.. +-+..+|..+...|-+.|..+.|.+-|+...+.. +-+..+.|..-.-+|..|++++|...|++-...
T Consensus 55 ~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 55 KKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 66666666555 3346688888888999999999999998877652 334577788888889999999999999988877
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheec
Q 021583 153 HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIK 231 (310)
Q Consensus 153 ~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~ 231 (310)
-..+.+..+|..+--+..+.|+.+.|++.|.+-.+. .|+ ..+.-.+.....+.|+.-.|...++.. ..
T Consensus 133 P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~-------~~-- 201 (250)
T COG3063 133 PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERY-------QQ-- 201 (250)
T ss_pred CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHH-------Hh--
Confidence 654455568888888888999999999999987764 343 356677778888889999988887652 11
Q ss_pred cCcccCChhhhhHhhhc--cCCChhhHHhhhchh
Q 021583 232 GKRVRIPAKPKYELDSA--TEGKTNEVETTKNPN 263 (310)
Q Consensus 232 ~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m 263 (310)
.+ ..+..+.-..|.- +.|+-..+.++-..+
T Consensus 202 -~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 202 -RG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred -cc-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11 1333333333333 777777666654433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00053 Score=56.28 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEK----------------DWKRIIQVTKWMLSKGQGRTMGTYFLLL 130 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~g~~p~~~ty~~ll 130 (310)
+-++-....+..|.+.|+.-|..+|+.||..+-+.. +-+-|.+++++|+..|+.||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 334445666667777777777777777777665421 1133555666666666666666666666
Q ss_pred HHHHhcCC
Q 021583 131 NALAEDGR 138 (310)
Q Consensus 131 ~~~~~~g~ 138 (310)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 66555544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.011 Score=49.03 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
.+...|-..|.+.|++..|..-+++..+.. +-+.-+|..+-..|-+.|+.+.|.+.|++-....- .+-.+-|..=..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHH
Confidence 356677889999999999999999988773 33457899999999999999999999999887653 444577888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCccchheeccCcccCChhhhhH
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPKWEYRYIKGKRVRIPAKPKYE 244 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
+|..|++++|..-|++-...---|. ..||..+.-|..+.|+.+.|...|++ ..|+. ....-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--------------~~~~l~ 178 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--------------PPALLE 178 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--------------ChHHHH
Confidence 8999999999999999887533333 47899999999999999999999876 22221 111111
Q ss_pred hhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 245 LDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 245 li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+-.. ..|+.-.|.-+++.....+. +....+--.+
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~i 214 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGI 214 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHH
Confidence 1122 67888889888888877665 5555544333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=63.51 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=104.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHH
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI--FFDKMISIYYN 171 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~y~~li~~~~~ 171 (310)
.-..+...|++++|+++++.- -+.......+..|.+.++++.|.+.++.|.+..-+ ... ...+.++.+..
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD--~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED--SILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC--HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHhC
Confidence 334556789999999988642 56788888999999999999999999999987532 111 33444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCccchheeccCcccCChhhhhHhhhc--
Q 021583 172 RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY-PPPKWEYRYIKGKRVRIPAKPKYELDSA-- 248 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~-~p~~~~~~~~~~~~~~~~~~~~~~li~~-- 248 (310)
.+.+.+|.-+|+++.+. ..++..+.+.+.-++...|++++|+.++++. ..+ .-+..+.-.++-+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------------~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------------PNDPDTLANLIVCSL 246 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------------CCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------------cCCHHHHHHHHHHHH
Confidence 45799999999998654 5678899999999999999999999998762 111 1112222223333
Q ss_pred cCCCh-hhHHhhhchhhcC
Q 021583 249 TEGKT-NEVETTKNPNESS 266 (310)
Q Consensus 249 ~~g~~-~~a~~~~~~m~~~ 266 (310)
..|+. +.+.+++..+...
T Consensus 247 ~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHH
T ss_pred HhCCChhHHHHHHHHHHHh
Confidence 56666 6677888877653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0051 Score=61.49 Aligned_cols=151 Identities=13% Similarity=0.074 Sum_probs=120.1
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 63 KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A 142 (310)
....+..++|..++.+..... +.+...+..+...+.+.|++++|.++|+...+.. ..+...+..+...+...|+.++|
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 334455666677777776533 4456678999999999999999999999987652 34466777888999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
...+++..+.. |.+.. |..+-..+...|+.++|+..+++..+. .|+ ...+..+..++...|..++|+..++..
T Consensus 103 ~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 103 LVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999998874 34445 888999999999999999999999874 454 556667888888999999999888754
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0032 Score=52.99 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
-|....+.......+.|++..|...|++.... -.+|..+|+.+--+|.+.|+.++|..-|.+..+-.. -+...+|.|
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--~~p~~~nNl 174 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP--NEPSIANNL 174 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--CCchhhhhH
Confidence 34556667889999999999999999997644 478999999999999999999999999999888765 333578999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
--.|.-.|+.+.|+.++..-...+-. |...-..|..+....|++++|+++-.
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999999999998876533 66777888899999999999988854
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00025 Score=58.19 Aligned_cols=107 Identities=22% Similarity=0.289 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 021583 85 EFPLITVKKALKTLENE-----KDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR 159 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 159 (310)
..|-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+ |.+. +.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-----------------p~ 105 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-----------------PR 105 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-----------------cc
Confidence 46789999999999764 7788888899999999999999999999998876 3321 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 211 (310)
..+.++-.-| -.+-+-|++++++|+..|+.||..|+..|++.|++.+..=
T Consensus 106 n~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 106 NFFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred cHHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 1222222222 2345779999999999999999999999999999876653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0044 Score=55.80 Aligned_cols=152 Identities=9% Similarity=-0.020 Sum_probs=101.8
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 021583 63 KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEN----EKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDG 137 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g 137 (310)
....+..+.+...+++..+.. +-+...+.. ...+.. .+..+.+.+.+.. .....|+ ......+-..+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 344466677778777776653 334444442 222222 3445555555544 2223343 345556667888899
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHH
Q 021583 138 RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGV-RPNV--SIVSMMGNAFQKLGMLDKYE 214 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~--~ty~~li~~~~~~g~~~~a~ 214 (310)
++++|++.+++..+..- .+...+..+-..|...|++++|..+++......- .|+. ..|..+...+...|+.++|.
T Consensus 129 ~~~~A~~~~~~al~~~p--~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 129 QYDRAEEAARRALELNP--DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999888753 4445788888899999999999999988775421 2333 45667888899999999999
Q ss_pred HHHHhC
Q 021583 215 KLKKKY 220 (310)
Q Consensus 215 ~l~~~~ 220 (310)
.++++.
T Consensus 207 ~~~~~~ 212 (355)
T cd05804 207 AIYDTH 212 (355)
T ss_pred HHHHHH
Confidence 998873
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0011 Score=62.43 Aligned_cols=174 Identities=16% Similarity=0.050 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
-.+.+|.++-++|.-+++++.|++.|+...+. .| ..++|+.+-+=+....++|.|+..|..-....- .+-..|--
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~--rhYnAwYG 494 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP--RHYNAWYG 494 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc--hhhHHHHh
Confidence 34678888888888899999999988876644 45 678888888888888889999999988775532 22225555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCccchheeccCcccCChh
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPKWEYRYIKGKRVRIPAK 240 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~~~~~~~~~~~~~~~~~ 240 (310)
|--.|.+.++.+.|+-.|+...+ +-| +.+....+...+-+.|+.|+|+++|++ +.|. .+-..
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k------------n~l~~ 560 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK------------NPLCK 560 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC------------CchhH
Confidence 66788899999999988888665 445 457777778888889999999999876 2222 11122
Q ss_pred hhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 241 PKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 241 ~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
...+.+-...++.++|...++++.. +.|+-.+--.|+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~ll 597 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKE--LVPQESSVFALL 597 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 2223333357888888888877754 446655555555
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.017 Score=50.82 Aligned_cols=196 Identities=10% Similarity=-0.085 Sum_probs=121.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+.+...+++..+.+ +-+...|+.+-..|...|+++.|.+.|+...+. .| +..+|..+...+...|++++|.+.
T Consensus 78 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 78 GLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555667777766654 346789999999999999999999999998865 34 467888889999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC---C
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYP---P 222 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~---p 222 (310)
|++..+..- .+.. .......+...++.++|...+....... .|+...+ .+. ....|+.+++ +.++... +
T Consensus 155 ~~~al~~~P--~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~ 226 (296)
T PRK11189 155 LLAFYQDDP--NDPY-RALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGAT 226 (296)
T ss_pred HHHHHHhCC--CCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCC
Confidence 999888653 2221 1222222345678999999997755322 3333222 222 2334555443 2332211 1
Q ss_pred CccchheeccCcccCChhhhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 223 PKWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
....+.. -....+.+-..+....|+.++|..++++-..... |+..-+...+
T Consensus 227 ~~~~l~~-----~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~~~~ 277 (296)
T PRK11189 227 DNTELAE-----RLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHRYAL 277 (296)
T ss_pred CcHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHHHHH
Confidence 1100100 0112233333333389999999999998876553 3444444433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0063 Score=47.48 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--HHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGT---YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP--RIFFD 163 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~y~ 163 (310)
..|..++..+ ..++...+...++.+.+.. ..+.+. .=.+-..+...|++++|...|+......-. ++ ....-
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-PELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 4567777776 4788999999999988663 223232 223457788899999999999999987631 22 13556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 164 KMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|...+...|++++|+..++...... .....+...-..|.+.|+.++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67888889999999999997643322 3345677788889999999999998764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00072 Score=61.89 Aligned_cols=103 Identities=15% Similarity=0.050 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 69 KEEVYGALDSFIAW--ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 69 ~~~~~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
.+.+..++-+.+.. ....-..|..++|+.|.+.|..+.+++++.+=...|+-||.++||.||+.+.+.|++..|.++.
T Consensus 82 ~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~ 161 (429)
T PF10037_consen 82 LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVA 161 (429)
T ss_pred HHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHH
Confidence 34456666666543 2222344567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHc
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNR 172 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~ 172 (310)
..|...+.- .+..|+..-+.+|.+.
T Consensus 162 ~~~~lQe~~-~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 162 TEMMLQEEF-DNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcc-CCchHHHHHHHHHHHh
Confidence 988877662 4446777777776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0066 Score=50.12 Aligned_cols=121 Identities=14% Similarity=0.092 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHH
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNAL-AEDGR--LDEAEELWTKI 149 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~-~~~g~--~~~A~~~~~~m 149 (310)
...++...+.+ +.|...|..+-..|...|+++.|...|+...... .-+...+..+-.++ ...|+ .++|.+++++.
T Consensus 59 i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 59 LQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34444444444 4567788888888888888888888888777653 33566777776653 56676 48888888888
Q ss_pred HhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 021583 150 FLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVS 198 (310)
Q Consensus 150 ~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 198 (310)
.+.+- .+...+..+-..+.+.|++++|...|+.+.+.. .|+..-+.
T Consensus 137 l~~dP--~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 137 LALDA--NEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHhCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 87753 444578888888888888888888888887643 34444333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0018 Score=50.64 Aligned_cols=91 Identities=8% Similarity=-0.012 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ 205 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 205 (310)
+..+-..+...|++++|...|+...... |.+...|..+-..+...|++++|...|+...+.. +-+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 5557778889999999999999998765 3556689999999999999999999999998743 236799999999999
Q ss_pred hcCCHHHHHHHHHh
Q 021583 206 KLGMLDKYEKLKKK 219 (310)
Q Consensus 206 ~~g~~~~a~~l~~~ 219 (310)
..|+.++|...|++
T Consensus 104 ~~g~~~eAi~~~~~ 117 (144)
T PRK15359 104 MMGEPGLAREAFQT 117 (144)
T ss_pred HcCCHHHHHHHHHH
Confidence 99999999999976
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.006 Score=59.80 Aligned_cols=131 Identities=9% Similarity=0.047 Sum_probs=113.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 83 ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 83 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
....+...+-.|.....+.|++++|..+++...+. .|+ ......+...+.+.+++++|+...++..+..- .+...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--~~~~~ 156 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--SSARE 156 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--CCHHH
Confidence 45556888889999999999999999999998876 565 56777789999999999999999999998753 45568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.+-.++.+.|++++|..+|++.... -|+ ..++..+-.++-+.|+.++|...|++
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999999999983 354 78899999999999999999999975
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0055 Score=55.61 Aligned_cols=141 Identities=11% Similarity=0.134 Sum_probs=95.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHHH-----------------------------
Q 021583 77 DSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGR-TMGT----------------------------- 125 (310)
Q Consensus 77 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p-~~~t----------------------------- 125 (310)
....+.|.+-+...-+....+.-...++|.|..+|+++.+.. ... |..+
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ 330 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRP 330 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCc
Confidence 334456766665555555566667789999999999988652 111 2333
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------------
Q 021583 126 --YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELG-------------- 189 (310)
Q Consensus 126 --y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g-------------- 189 (310)
.+++-+-|.-.++.++|...|++..+-+- .....|+.|=+-|....+...|.+-++...+-.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp--~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNP--KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCc--chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 34455566777788999999998887653 344578888888888888888888776655432
Q ss_pred ------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 190 ------------------VRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 190 ------------------~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++| |...|.+|-.+|.+.++.++|.+.|++
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 455 456666666666666666666666654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0018 Score=44.92 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN 171 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~ 171 (310)
..+...+...|++++|..+++...+.. ..+...+..+...+...|++++|.+.|++..+... .+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHH
Confidence 344555556666666666666655442 22334555566666666666666666666555432 222355566666666
Q ss_pred cCCHHHHHHHHHHHH
Q 021583 172 RGMHEKMFEIFADME 186 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~ 186 (310)
.|+.++|.+.+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666665544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0077 Score=52.48 Aligned_cols=168 Identities=12% Similarity=0.004 Sum_probs=122.4
Q ss_pred CCCCCCchHHHHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 34 GPRPRYPRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKW 113 (310)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 113 (310)
+......+-|=......++.+.+-+.++ ..-|+.-.. -.|-+.||-.|-++|.+..++..|+.+|.+
T Consensus 215 ~~~~~~~dwwWk~Q~gkCylrLgm~r~A-----------ekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~ 281 (478)
T KOG1129|consen 215 GSTGCTLDWWWKQQMGKCYLRLGMPRRA-----------EKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGE 281 (478)
T ss_pred ccccchHhHHHHHHHHHHHHHhcChhhh-----------HHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhh
Confidence 3333444444444444444444444444 444443222 246688999999999999999999999988
Q ss_pred HHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 021583 114 MLSKGQGRTMGTYFL-LLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 192 (310)
Q Consensus 114 m~~~g~~p~~~ty~~-ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 192 (310)
-.+. .|--+||-. +-..+-..++.++|.++++...+..- .+......+-.+|.-.++.+-|+..|++..+-|+.
T Consensus 282 gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~- 356 (478)
T KOG1129|consen 282 GLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ- 356 (478)
T ss_pred hhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-
Confidence 6655 466666644 56677777899999999999887653 44456666777888899999999999999999986
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 193 NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 193 ~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+...|+.+--||.-.+++|-++--|++
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 777888988999999999998888765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0023 Score=48.98 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMG 201 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 201 (310)
+......+...+.+.|+.++|.+.|++....+- .+...|..+-..|.+.|++++|...++...+.+ +.+...+..+-
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 345567778888999999999999999988653 455689999999999999999999999877654 33567788888
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 021583 202 NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~ 219 (310)
.+|...|+.++|.+.|++
T Consensus 93 ~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 93 ECLLALGEPESALKALDL 110 (135)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 899999999999999876
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.02 Score=50.98 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-------MGTYFLLLNALAEDGRLDEAE 143 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~ty~~ll~~~~~~g~~~~A~ 143 (310)
.+..-++++.+.+ +-+.........+|.+.|++.....+...|.+.|+--+ ..+|+.+++-....+..++-.
T Consensus 171 aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 171 AARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 3444455555444 33466778888888888888888888888888876544 345666666666666666655
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------------------------------C
Q 021583 144 ELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP------------------------------N 193 (310)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p------------------------------~ 193 (310)
..|++..+.-- ..+ ..-.+++.-+.++|+.++|.++..+-.+++..| +
T Consensus 250 ~~W~~~pr~lr-~~p-~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 250 TWWKNQPRKLR-NDP-ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HHHHhccHHhh-cCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 66666554322 111 234455666677777777777766665554222 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 194 VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 194 ~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
.-.+.+|-..|.+.+.|.+|...|+.- -...++.+.|+.+-++ ..|...+|++..++-+.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaA------------l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAA------------LKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH------------HhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 355677778888888888888887641 1226777788888877 88999999888765543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0029 Score=43.77 Aligned_cols=92 Identities=24% Similarity=0.245 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF 204 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 204 (310)
++..+...+...|++++|.++|++..+..- .+...+..+...|...+++++|.+.++...... ..+..++..+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 355677788889999999999999887643 334678889999999999999999999987754 22446888889999
Q ss_pred HhcCCHHHHHHHHHh
Q 021583 205 QKLGMLDKYEKLKKK 219 (310)
Q Consensus 205 ~~~g~~~~a~~l~~~ 219 (310)
...|+.++|...+++
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 999999999999866
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.019 Score=48.50 Aligned_cols=166 Identities=14% Similarity=0.056 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-HHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ-GRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFD 163 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~y~ 163 (310)
....+-.+...+.+.|+++.|...|+......- .|. ..++..+...+.+.|++++|...++++.+..-..+.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 456777888889999999999999999876521 111 2467778899999999999999999998765321211 1344
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 021583 164 KMISIYYNR--------GMHEKMFEIFADMEELGVRPNV-SIV-----------------SMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 164 ~li~~~~~~--------g~~~~a~~l~~~m~~~g~~p~~-~ty-----------------~~li~~~~~~g~~~~a~~l~ 217 (310)
.+-.++.+. |+.++|.+.++...... |+. ..+ -.+...|.+.|+.++|...+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 444445443 77899999999987643 332 111 13456678889999999998
Q ss_pred HhC---CCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 218 KKY---PPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 218 ~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
++. .|+. ......+..+... ..|+.++|..+++.+..
T Consensus 190 ~~al~~~p~~-----------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 190 ETVVENYPDT-----------PATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHCCCC-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 763 1221 2223445555555 89999999988777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0052 Score=56.16 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
.|..=|++..+.+ +-+...|-.+-.+..+.+++++++..|++.+++ ++--..+|+-.-..+...+++++|.+.|+...
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 3444444444433 224667777777778889999999999998866 45557899999999999999999999999877
Q ss_pred hcCCC----CChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 151 LDHLE----GTPR--IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 151 ~~~~~----~~~~--~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+..-. ..+. .+.-+++-.-. .+++..|+++++.-.+ +.|- ...|..|...-...|++++|..+|++
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 54221 1111 22333333333 4899999999988765 3453 48899999999999999999999976
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.011 Score=48.81 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=93.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH-HHcCC--HHH
Q 021583 101 EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY-YNRGM--HEK 177 (310)
Q Consensus 101 ~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~-~~~g~--~~~ 177 (310)
.++.+++...++...... ..|...|..|-..|...|+.++|...|++..+..- .+...+..+-.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 556677777776655442 56788999999999999999999999999888753 4556788888764 67777 599
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 178 MFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 178 a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|.+++++..+..-. +...+..+...+.+.|++++|...|++
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999875422 568889999999999999999999887
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0067 Score=53.21 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
-+.......+..|.+.++++.|.+.++.|.+.. .| .+-..|..++.. .+.+++|..+|+++.++- +.+..+
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~ 203 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKL 203 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHH
Confidence 457777888999999999999999999998763 44 344445555543 346999999999988763 245568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGML-DKYEKLKKKY 220 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~-~~a~~l~~~~ 220 (310)
.|.+..++...|++++|++++.+.... .| |..|...++-+....|+. +.+.+.+.++
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999999999999999999996653 34 467788888888888888 6677776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0077 Score=52.61 Aligned_cols=126 Identities=10% Similarity=0.080 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
.+|..+|+..-+.+..+.|+.+|...++.+ ...+++...++|.-+ ..++.+.|.++|+...+.- +.+...|...|.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888999988888999999999988543 344555555555433 3466777999999888763 244457888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNV----SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.+.++.+.|..+|+..... .|.. ..|..+++-=.+.|+++.+.++.++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999998765 3333 4888888888889999998888765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.057 Score=49.31 Aligned_cols=188 Identities=11% Similarity=-0.022 Sum_probs=140.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
...++|...|+...+.+ +-....|+.+-.-|...++...|.+-|....+-+ +.|-..|=-|-++|.--+...=|+-.|
T Consensus 344 ~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYf 421 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYF 421 (559)
T ss_pred HhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHH
Confidence 45666777788777766 3446678888888888888888888888877663 567777788888999989999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccc
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWE 226 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~ 226 (310)
++..+- +|-|...|.+|=..|.+.++.++|++-|......|-. +...|..|.+.|-+.++..+|.+.|+++...
T Consensus 422 qkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~--- 495 (559)
T KOG1155|consen 422 QKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEV--- 495 (559)
T ss_pred HHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---
Confidence 887764 4567789999999999999999999999998876643 6688999999999999999999999873211
Q ss_pred hheeccCcccCChhhhhH--hhhc--cCCChhhHHhhhchhhc
Q 021583 227 YRYIKGKRVRIPAKPKYE--LDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~--li~~--~~g~~~~a~~~~~~m~~ 265 (310)
+ ...|...+-..... |..- +.+++++|..+......
T Consensus 496 ~---~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 496 S---ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred H---HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 1 11122222112222 2222 89999999887655433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0085 Score=44.35 Aligned_cols=100 Identities=14% Similarity=0.048 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKG--QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIFFDKMI 166 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~y~~li 166 (310)
++-.+...+.+.|++++|.+.|..+.... .......+-.+...+.+.|++++|.+.|+++....-..+ ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45566777788889999999998887542 112245666688888888999999999988876532111 123577777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC
Q 021583 167 SIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
..+.+.|+.++|.+.+++..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 88888899999999888887753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0031 Score=54.83 Aligned_cols=184 Identities=10% Similarity=0.054 Sum_probs=134.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+.++.|..++.+-.+.- +.|+....-+...+-..++.++|.++|....+. ..-++.+..++-.+|.-.++++-|+.++
T Consensus 270 dQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHH
Confidence 44555566555533322 334445556677788889999999999998765 3557788888889999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhCCCCc
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV--SIVSMMGNAFQKLGMLDKYEKLKKKYPPPK 224 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~l~~~~~p~~ 224 (310)
.++.+.|+. .+ ..|+.+--+|.-.+++|-++.-|.+-...--.|+. ..|-.|-.....-|++..|.+.|+-.....
T Consensus 348 RRiLqmG~~-sp-eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQMGAQ-SP-ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHhcCC-Ch-HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 999999994 43 56777777777899999999999988876555664 567777777888999999999987532110
Q ss_pred cchheeccCcccCChhhhh--HhhhccCCChhhHHhhhchhhc
Q 021583 225 WEYRYIKGKRVRIPAKPKY--ELDSATEGKTNEVETTKNPNES 265 (310)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~--~li~~~~g~~~~a~~~~~~m~~ 265 (310)
.-+...+| +++.++.|++++|..+++.-.+
T Consensus 426 -----------~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 426 -----------AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred -----------cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 11223333 3455599999999988876543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.015 Score=53.21 Aligned_cols=144 Identities=11% Similarity=0.057 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
-|...+. +...|++++|+..++.+.+. .+-|.+-.......+.+.++..+|.+.++++.... |.....+-.+-.+|
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHH
Confidence 3544444 44678999999999997765 33455666677889999999999999999999764 23345788889999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhcc
Q 021583 170 YNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSAT 249 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~ 249 (310)
.+.|+.++|..+++...... +-|...|..|-.+|...|+..++..-..+ .+.+
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~------- 437 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYAL------- 437 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHh-------
Confidence 99999999999999987653 44789999999999999999998666322 2233
Q ss_pred CCChhhHHhhhchhh
Q 021583 250 EGKTNEVETTKNPNE 264 (310)
Q Consensus 250 ~g~~~~a~~~~~~m~ 264 (310)
.|+++.|.+.+..-.
T Consensus 438 ~G~~~~A~~~l~~A~ 452 (484)
T COG4783 438 AGRLEQAIIFLMRAS 452 (484)
T ss_pred CCCHHHHHHHHHHHH
Confidence 788888877775554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00094 Score=46.83 Aligned_cols=82 Identities=18% Similarity=0.322 Sum_probs=47.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 136 DGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 136 ~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
.|++++|+.+|+++.+..-..++...+-.+-.+|.+.|++++|.++++. .+.+. .+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777776643101223444477777777777777777766 21111 122333344667777777777777
Q ss_pred HHHh
Q 021583 216 LKKK 219 (310)
Q Consensus 216 l~~~ 219 (310)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.025 Score=44.07 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV--SIVSMM 200 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~l 200 (310)
..|..++..+ ..++.+.+...++.+.+..-..+- ....-.+-..+...|++++|...|+......-.|+. ...-.|
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4566677776 489999999999999987542111 123444557888999999999999999987633332 345557
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhch
Q 021583 201 GNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNP 262 (310)
Q Consensus 201 i~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~ 262 (310)
...+...|++++|+..++...+..+ ....+..+-+. +.|++++|...++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~------------~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF------------KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch------------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7889999999999999876433221 11222222222 79999999887753
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.04 Score=46.51 Aligned_cols=170 Identities=15% Similarity=0.039 Sum_probs=124.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 82 WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
....|.......+-..+.-.|+-+....+....... ..-|......+.....+.|++.+|...|.+..+-. |++...
T Consensus 60 ~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~ 136 (257)
T COG5010 60 VLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEA 136 (257)
T ss_pred HhcCcchHHHHHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhh
Confidence 344554333356677777788888877777664422 34566777779999999999999999999988764 577789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChh
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAK 240 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~ 240 (310)
||.+=-+|-+.|+.++|..-|.+..+- .| +...++.|.-.|.-.|+++.|..++..-. .. + ..+..
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~------l~----~-~ad~~ 203 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAY------LS----P-AADSR 203 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH------hC----C-CCchH
Confidence 999999999999999999999998773 44 35778999999999999999999976511 00 0 11333
Q ss_pred hhhH--hhhccCCChhhHHhhhchhhcCC
Q 021583 241 PKYE--LDSATEGKTNEVETTKNPNESSE 267 (310)
Q Consensus 241 ~~~~--li~~~~g~~~~a~~~~~~m~~~~ 267 (310)
+-.. ++....|+..+|+++...-....
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e~~~~ 232 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQELLSE 232 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccccccch
Confidence 3333 33448999999998876554443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0058 Score=53.40 Aligned_cols=132 Identities=9% Similarity=0.015 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGN 202 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 202 (310)
+.+|..+|+..-+.+.++.|.++|++.++.+-.........++|.-++ .++.+.|.++|+...+. +.-+...|...++
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 368999999999999999999999999876542233334455554433 67788899999998865 3446777888889
Q ss_pred HHHhcCCHHHHHHHHHhCCCCccchheeccCcccC-ChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 203 AFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRI-PAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 203 ~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~-~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
-+.+.++.+.|..+|++...... ... ...+|...++. ..|+.+.+.++.+++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~---------~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLP---------KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSS---------CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcC---------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987432200 011 34578888877 88888888887766644
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.012 Score=57.84 Aligned_cols=196 Identities=12% Similarity=0.080 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc------------C
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAED------------G 137 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~------------g 137 (310)
.+...+.+....+ .-++..++-+-+.|.+...+..|.+-|....+. ...+|+++.-.|-+.|... +
T Consensus 548 ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 548 EASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 3444455444432 223444444444777777788888877665533 2347888887777765432 3
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 138 RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
..++|.++|.+..+.. |.|...=|-+-..++..|++.+|..+|...++.... +..+|..+.++|..+|++..|.++|
T Consensus 627 ~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHH
Confidence 3578999999888764 456567777888889999999999999999987542 4567899999999999999999998
Q ss_pred HhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 218 KKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 218 ~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+.+. +...-.-+..+...|-.+ .+|.+.+|.+++..-...-..-..-.||..+
T Consensus 704 e~~l---------kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 704 ENCL---------KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHH---------HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 7632 222234456666667777 8888988888775444333222334566655
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.13 Score=48.80 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
++.-+-..|-..|++++|+++++...+. .|+ +..|.+--+.|-+.|++++|.+.++..++... -|...=+-.+..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL--ADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHH
Confidence 4556677788999999999999988876 577 67888889999999999999999999998876 677788888899
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHh
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPNVSI--------VSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t--------y~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+.++|++++|.+++......+..|-... ..-...+|.+.|++..|++.|..
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999887765443211 24455678899999999888754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.032 Score=50.18 Aligned_cols=157 Identities=9% Similarity=-0.015 Sum_probs=101.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY 170 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~ 170 (310)
...+...|++++|.++++...+. .+.|...+.. ...+.. .+..+.+.+.+.. .....+........+-..+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDD-YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 34556789999999999998765 2334444442 223333 4555555555554 11121122234555667788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCCh--hhhhHhhhc
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPA--KPKYELDSA 248 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~--~~~~~li~~ 248 (310)
..|++++|++.++...+.. +.+...+..+...|...|++++|..++++..+.... .++. ..|-.+...
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---------~~~~~~~~~~~la~~ 195 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---------SSMLRGHNWWHLALF 195 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---------CcchhHHHHHHHHHH
Confidence 9999999999999998754 234678889999999999999999998874322110 1121 222223333
Q ss_pred --cCCChhhHHhhhchhhc
Q 021583 249 --TEGKTNEVETTKNPNES 265 (310)
Q Consensus 249 --~~g~~~~a~~~~~~m~~ 265 (310)
..|+.++|...++....
T Consensus 196 ~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 196 YLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHCCCHHHHHHHHHHHhc
Confidence 89999999999988743
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.045 Score=43.97 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT--MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
...+..+-..+...|++++|...|++..+..-.+. ...+..+...+.+.|++++|...+++..+..- .+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHH
Confidence 45678888888999999999999999876543332 46788899999999999999999999888643 344567777
Q ss_pred HHHHHHcCC
Q 021583 166 ISIYYNRGM 174 (310)
Q Consensus 166 i~~~~~~g~ 174 (310)
...|...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 777877776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.16 Score=46.29 Aligned_cols=174 Identities=16% Similarity=0.135 Sum_probs=87.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 021583 100 NEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMF 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~ 179 (310)
..|++++|.+.|.+.......-+...||+=+ .+-+.|++++|+++|-++...-. -+..+.-.+.+-|-...+...|.
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~--nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILL--NNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhCHHHHH
Confidence 3455666666666555443222233333322 23445566666666655443322 11223444455555555555555
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCc-cchh-----------------ee-ccCccc
Q 021583 180 EIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPK-WEYR-----------------YI-KGKRVR 236 (310)
Q Consensus 180 ~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~-~~~~-----------------~~-~~~~~~ 236 (310)
+++-+ ...+.| |.....-|...|-+.|+-.+|.+.+=. ..|.. .+.. ++ +..-+.
T Consensus 579 e~~~q--~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 579 ELLMQ--ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHH--hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 55433 232333 345555555556666665555554311 11111 0000 11 123446
Q ss_pred CChhhhhHhhhc---cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 237 IPAKPKYELDSA---TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 237 ~~~~~~~~li~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
|+..-|..++.. +.|+++.|.+++... ....|.+..-+.-|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~-hrkfpedldclkflv 701 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDI-HRKFPEDLDCLKFLV 701 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhCccchHHHHHHH
Confidence 777888877766 888999888888665 334455555555555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.022 Score=45.57 Aligned_cols=95 Identities=12% Similarity=0.029 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR--TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
...|..+...+...|++++|...|+......-.+ ...+|..+-..|...|+.++|++.+++..+..- ....+++.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~--~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP--FLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHH
Confidence 4567777888888899999999999887553222 245788888999999999999999998887532 333467777
Q ss_pred HHHHH-------HcCCHHHHHHHHHH
Q 021583 166 ISIYY-------NRGMHEKMFEIFAD 184 (310)
Q Consensus 166 i~~~~-------~~g~~~~a~~l~~~ 184 (310)
...|. ..|++++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 77777 77777766665554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.018 Score=42.52 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIFFDKMISIYYNRGMHEKMFEIFADMEELG--VRPNVSIVSMM 200 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~l 200 (310)
.++-.+...+.+.|+.++|.+.|+++.+..-..+ ....+..+...+.+.|++++|.+.++...... -......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3456677888999999999999999987643111 12367779999999999999999999988642 11124567888
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 021583 201 GNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 201 i~~~~~~g~~~~a~~l~~~~ 220 (310)
..++...|+.++|.+.++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 88899999999999998763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.099 Score=51.31 Aligned_cols=183 Identities=11% Similarity=0.085 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----------------------
Q 021583 70 EEVYGALDSFIA-WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTY---------------------- 126 (310)
Q Consensus 70 ~~~~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty---------------------- 126 (310)
+.|.+.++...+ .+-..+...++.++..|.+...++.+......+......+|...+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 556666666554 244566778899999999999999999999888873332222221
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 127 ----FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI-FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMG 201 (310)
Q Consensus 127 ----~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 201 (310)
.-++-++..-...+....+...+.+...-+.+.+ .|--+..+|.+.|++++|..++......-.--+...|--+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 1223334444555556666666677665222222 79999999999999999999999998764444688999999
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCccchheeccCcccCChhhhhHhhhccCCChhhHHhhhchhh
Q 021583 202 NAFQKLGMLDKYEKLKKKY---PPPKWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNE 264 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~ 264 (310)
++|-..|..++|.+.|+.+ .|+ ..|+.+--+=+-...|+.++|.+++..+.
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~------------~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPD------------NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCC------------chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999998763 333 23333322222226999999999998875
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.034 Score=50.72 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=92.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
...+.+..+++++.+.. |+. ...+...+...++-.+|.+++++.... .+-+......-.+.|.+.++.+.|+++.
T Consensus 183 ~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45667889999988876 554 345788888888999999999998854 3446666777778899999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
++..+.. |.+-.+|..|..+|.+.|++++|+-.++.+..
T Consensus 258 k~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 258 KKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999863 23335999999999999999999999998764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.087 Score=48.00 Aligned_cols=128 Identities=14% Similarity=0.057 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
....-.+.+.|--..+...|.+++-+.. +=+.-|....+.|-..|-+.|+-.+|.+++-+--+ -+ |.+..|...|-.
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yf-p~nie~iewl~a 634 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YF-PCNIETIEWLAA 634 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-cc-CcchHHHHHHHH
Confidence 4445555666666666666666654432 22455678888899999999999888887654322 12 345557777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhC
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ-KLGMLDKYEKLKKKY 220 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~-~~g~~~~a~~l~~~~ 220 (310)
-|....-++++...|+.. .=+.|+..-|..||..|. +.|++.+|..+++.+
T Consensus 635 yyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 888888889999998874 447899999999887765 579999999998763
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.086 Score=49.99 Aligned_cols=181 Identities=13% Similarity=0.065 Sum_probs=123.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHh
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK----G----------QGRTM--GTYFLLLNALAE 135 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g----------~~p~~--~ty~~ll~~~~~ 135 (310)
+...+..+...|+ +..|+.|-..|....+.+-..+++..+... | -.|+. .++.-|-..|-.
T Consensus 130 ~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCC---chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 5566677778886 345666666666666666667777766533 1 13444 355666788889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 136 DGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 136 ~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
.|+.++|+++.++..+.. |.-...|..--..|-+.|++++|.+.++.-+..... |...=+--...+.++|++++|.+
T Consensus 207 ~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred hCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999888763 222348999999999999999999999998875432 66766777888899999999999
Q ss_pred HHHhCCCCcc-chheeccCcccCChhhhhHhhhc----cCCChhhHHhhhchh
Q 021583 216 LKKKYPPPKW-EYRYIKGKRVRIPAKPKYELDSA----TEGKTNEVETTKNPN 263 (310)
Q Consensus 216 l~~~~~p~~~-~~~~~~~~~~~~~~~~~~~li~~----~~g~~~~a~~~~~~m 263 (310)
++..+..... .... +..-..+|-.+-.+ +.|++..|.+.+...
T Consensus 284 ~~~~Ftr~~~~~~~~-----L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 284 TASLFTREDVDPLSN-----LNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHhhcCCCCCcccC-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9877543322 0110 01112244333333 888888887776433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.079 Score=45.03 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
-++.+.+......-+..........|++.+++++|++..+.. -+......=+..+.+..+++-|++-+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344444555555555555666677889999999999998762 12333333355566778899999999999975
Q ss_pred CCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 153 HLEGTPRIFFDKMISIYYN----RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 153 ~~~~~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
. +..|-+.|..++.+ .+.+..|.=+|++|-++ ..|+..+.+-+.-++...|++++|+.+++.
T Consensus 167 d----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 167 D----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred c----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 3 34667766666654 55689999999999764 578999999999999999999999999876
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.22 Score=45.82 Aligned_cols=127 Identities=17% Similarity=0.086 Sum_probs=98.9
Q ss_pred hHhHHHHHHhcC-CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 021583 55 SAKLVTCIKGLS-NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNA 132 (310)
Q Consensus 55 ~~~~~~~l~~~~-~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~ 132 (310)
+..+..++..+. +..+.+...++.+...- +-|+.-.......+.+.++.++|.+.++.+... .|+ ....-++-++
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 344555554433 55666778787765543 345666777788889999999999999998866 466 5666778899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 133 LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
|.+.|++++|..++++.....- .+...|..|-.+|...|+..++..-..++.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999887653 555799999999999999999988776643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.25 Score=48.62 Aligned_cols=164 Identities=12% Similarity=0.138 Sum_probs=118.7
Q ss_pred chHHHHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 021583 40 PRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG- 118 (310)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g- 118 (310)
|.+...+...+..-..|++.+| ..++.+..+.. +-....|-+|-..|-..|+.+++...+ +....
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA-----------~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL 202 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEA-----------EEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHL 202 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHH-----------HHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhc
Confidence 3455555555554334666666 88888888776 556789999999999999999987765 44333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----
Q 021583 119 QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV---- 194 (310)
Q Consensus 119 ~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---- 194 (310)
.+-|..-|..+-....+.|.+++|.-+|.+..+..- .+...+--=+.-|-+.|+...|+.-|.++....-..|.
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p--~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANP--SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 345678899999999999999999999999998753 44434444456678899999999999999875322232
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 195 SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 195 ~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+--.+++.|...++.+.|.+.++.
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2233445667777888888888765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.17 Score=46.57 Aligned_cols=192 Identities=11% Similarity=0.021 Sum_probs=130.7
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 63 KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A 142 (310)
+.+++..-.+..-|+......-.++. .|-.+-..|....+.++....|+...... +-|..+|..--..+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 33445555667777776665533332 27778888999999999999999877654 23445555555666666789999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY-- 220 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~-- 220 (310)
..=|++-++.. |-+...|-.+-.+..+.+++++++..|++..++ .+-....|+.....+...+++|+|.+.|+..
T Consensus 414 ~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999888653 344457888888888999999999999998764 2224588999999999999999999999762
Q ss_pred -CCCccchheeccCcccCChhhhhHhhhc-cCCChhhHHhhhchhhc
Q 021583 221 -PPPKWEYRYIKGKRVRIPAKPKYELDSA-TEGKTNEVETTKNPNES 265 (310)
Q Consensus 221 -~p~~~~~~~~~~~~~~~~~~~~~~li~~-~~g~~~~a~~~~~~m~~ 265 (310)
.|..... -+.+...+..+++-. =.+++..|++++..-.+
T Consensus 491 LE~~~~~~------~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 491 LEPREHLI------IVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred hccccccc------cccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 3331100 012223333333333 23677777777655443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.14 Score=52.75 Aligned_cols=168 Identities=12% Similarity=0.013 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
.|.++++.-..-|.-+...++|+...+.. ---..|..|..-|.+.+..++|-++|+.|.++-- -....|...+..+
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHH
Confidence 46666666666677788899999887663 1236778899999999999999999999988633 2234799999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhh
Q 021583 170 YNRGMHEKMFEIFADMEELGVRPNV---SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELD 246 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li 246 (310)
.+..+-+.|..++.+..+ +.|.. ....-.+..-.+.|+.+.+.-+|+..... + +-...+|+.++
T Consensus 1575 l~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-----y------PKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-----Y------PKRTDLWSVYI 1641 (1710)
T ss_pred hcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-----C------ccchhHHHHHH
Confidence 999999999999888665 34542 22223333345789999988888763211 1 33457899999
Q ss_pred hc--cCCChhhHHhhhchhhcCCCCCchhh
Q 021583 247 SA--TEGKTNEVETTKNPNESSEEPEAAAN 274 (310)
Q Consensus 247 ~~--~~g~~~~a~~~~~~m~~~~~~p~~~~ 274 (310)
+. +.|....+..+|++....+..|.-.-
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 99 99999999999999999998885544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.03 Score=50.66 Aligned_cols=102 Identities=11% Similarity=-0.047 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM 174 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~ 174 (310)
-..+...|+++.|.+.|.+..... .-+...|..+-.+|.+.|++++|+..+++..+..- .+...|..+-.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCC
Confidence 345567788888888888877652 33567777788888888888888888888877642 344578888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 175 HEKMFEIFADMEELGVRPNVSIVSMMG 201 (310)
Q Consensus 175 ~~~a~~l~~~m~~~g~~p~~~ty~~li 201 (310)
+++|...|+...+. .|+......++
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888887763 45543334333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.079 Score=52.11 Aligned_cols=144 Identities=12% Similarity=0.030 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 021583 119 QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIV 197 (310)
Q Consensus 119 ~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty 197 (310)
...+...+-.|-......|+.++|+.+++...+.. |...-.+..+...+.+.+++++|...++..... .|+ ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHH
Confidence 56678999999999999999999999999999863 344458999999999999999999999998874 465 5777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhh
Q 021583 198 SMMGNAFQKLGMLDKYEKLKKKYP-PPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAAN 274 (310)
Q Consensus 198 ~~li~~~~~~g~~~~a~~l~~~~~-p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~ 274 (310)
..+-.++...|+.++|..+|++.. ++ ..+...+..+-.+ ..|+.++|...++.-...-- |-.+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~------------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~ 224 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH------------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARK 224 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHH
Confidence 888889999999999999987732 11 1223333333333 68999999999877644222 34467
Q ss_pred hhhhh
Q 021583 275 LNESL 279 (310)
Q Consensus 275 ~~~ll 279 (310)
|+..+
T Consensus 225 ~~~~~ 229 (694)
T PRK15179 225 LTRRL 229 (694)
T ss_pred HHHHH
Confidence 77776
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.12 Score=49.12 Aligned_cols=147 Identities=7% Similarity=-0.021 Sum_probs=101.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHH
Q 021583 82 WELEFPLITVKKALKTLENEK-----DWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDG--------RLDEAEELWT 147 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g--------~~~~A~~~~~ 147 (310)
...+.+..+|...+.+..... +.+.|.++|++..+. .|+ ...|..+..++.... ++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345567889999998865432 377899999998866 465 455555444333221 2334444444
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCc
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPK 224 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~ 224 (310)
+.......+.+...|.++--.+...|++++|...+++..+.+ |+...|..+...|...|+.++|...+++ +.|..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 433322223344578887666667899999999999988865 7889999999999999999999999986 56776
Q ss_pred cchheecc
Q 021583 225 WEYRYIKG 232 (310)
Q Consensus 225 ~~~~~~~~ 232 (310)
.+|..+..
T Consensus 487 pt~~~~~~ 494 (517)
T PRK10153 487 NTLYWIEN 494 (517)
T ss_pred chHHHHHh
Confidence 66655333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0035 Score=43.87 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 021583 101 EKDWKRIIQVTKWMLSKGQ-GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMF 179 (310)
Q Consensus 101 ~~~~~~a~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~ 179 (310)
.|+++.|..+|+.+.+..- .++...+-.+-..|.+.|++++|.+++++ .+.+. .+....-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHHH
Confidence 5788899999998886532 12444444578888899999999999988 32222 22223334577788899999999
Q ss_pred HHHHH
Q 021583 180 EIFAD 184 (310)
Q Consensus 180 ~l~~~ 184 (310)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88865
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.022 Score=43.23 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWML---------------SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---------------~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
|..++.++|.++++.|+.+....+.+..= .....||..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35677788888888888888777776431 112345666666666666666666666666665554
Q ss_pred c-CCCCChHHHHHHHHHHHHH
Q 021583 152 D-HLEGTPRIFFDKMISIYYN 171 (310)
Q Consensus 152 ~-~~~~~~~~~y~~li~~~~~ 171 (310)
. ++ +.+..+|..|+.....
T Consensus 81 ~Y~I-~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPI-PIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCC-CCCHHHHHHHHHHHHH
Confidence 4 33 4555566666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.1 Score=48.58 Aligned_cols=146 Identities=11% Similarity=0.101 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 69 KEEVYGALDSFIAW-ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 69 ~~~~~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
.+++.++.+++... ...|+ .+|..+|+.-.+..-++.|+.+|.+.++.+..+ .+++++++|.-||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 44467777776654 44444 467788999889989999999999999888877 89999999998885 6778899999
Q ss_pred HH-HHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 147 TK-IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV--SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 147 ~~-m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+- |+.-|- .| .--+..+..+.+.++-..+..+|+.....++.||. ..|..+|.-=..-|++..+.++-++
T Consensus 425 eLGLkkf~d--~p-~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 425 ELGLKKFGD--SP-EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHhcCC--Ch-HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 84 554443 33 33566778888899999999999999988777774 8999999999999999999988765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.053 Score=50.57 Aligned_cols=132 Identities=15% Similarity=0.026 Sum_probs=102.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-hHHHHHHHHHHHH
Q 021583 96 KTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGT-PRIFFDKMISIYY 170 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~y~~li~~~~ 170 (310)
--|.+.++++.|.++|.+.... .+-|....+-+--.....+.+.+|..+|+.-.+. +-+.+ -..+++.|=.+|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 4567788999999999887655 3557788888777777889999999999876622 11111 1237999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCccchhe
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPKWEYRY 229 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~~~~~~ 229 (310)
+.+..++|+..++.-.... +-|..||.++-..|...|++|.|...|.+ +.|+...-..
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 9999999999999977642 33789999999999999999999999987 5677654443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0059 Score=52.12 Aligned_cols=84 Identities=19% Similarity=0.065 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----------------HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDW----------------KRIIQVTKWMLSKGQGRTMGTYFLLLN 131 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----------------~~a~~~~~~m~~~g~~p~~~ty~~ll~ 131 (310)
-++-.+-.++.|.+.|++-|..+|+.||+.+-+.+-. +=+.+++++|+..|+.||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3445677788999999999999999999998774421 337899999999999999999999999
Q ss_pred HHHhcCCH-HHHHHHHHHHHh
Q 021583 132 ALAEDGRL-DEAEELWTKIFL 151 (310)
Q Consensus 132 ~~~~~g~~-~~A~~~~~~m~~ 151 (310)
++++.+-. .+..+++--|.+
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HhccccccHHHHHHHHHhhhh
Confidence 99998875 344555444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.048 Score=43.58 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHH
Q 021583 104 WKRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMISIYYNRGMHEKMFEI 181 (310)
Q Consensus 104 ~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~l 181 (310)
+..+...+..+. ..+..--...|..+...+...|++++|+..|++.......+.+ ..+|..+-..|...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444443 2322234567788888888999999999999998876432222 24899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHH-------hcCCHHHHHHHHH
Q 021583 182 FADMEELGVRPN-VSIVSMMGNAFQ-------KLGMLDKYEKLKK 218 (310)
Q Consensus 182 ~~~m~~~g~~p~-~~ty~~li~~~~-------~~g~~~~a~~l~~ 218 (310)
++..... .|+ ..++..+...|. ..|+++.|...++
T Consensus 95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9998764 343 466667777776 7888887666654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0085 Score=39.81 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 135 EDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
+.|++++|.++|+++.+..- .+...+-.+..+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555544431 2333444455555555555555555555443
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.036 Score=42.08 Aligned_cols=86 Identities=8% Similarity=0.000 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL--------------EGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~--------------~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
|..++.++|.++++.|+++...++.+..-.-++ ..|+..+-.+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567899999999999999999999877553221 125556899999999999999999999999876
Q ss_pred C-CCCCCHHHHHHHHHHHHhc
Q 021583 188 L-GVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 188 ~-g~~p~~~ty~~li~~~~~~ 207 (310)
. +++.+..+|..|++-+...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 5 7887889999999876544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.17 Score=47.22 Aligned_cols=150 Identities=12% Similarity=0.036 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021583 104 WKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFA 183 (310)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~ 183 (310)
.+.....++..+..-..--..+|..+|+.--+..-+.-|..+|.+.++.+.......+++++|.-|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 6667778888775544444588999999999999999999999999999875445569999999999 688899999998
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhh
Q 021583 184 DMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTK 260 (310)
Q Consensus 184 ~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~ 260 (310)
-=... -+|. .--...+.-+...++-..|.-+|++..+....- .-...+|+.+++. .-|+...+.++-
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~--------~ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA--------DKSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh--------hhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 75443 2343 333566677788888889999988754331111 2235788999988 899999888877
Q ss_pred chhh
Q 021583 261 NPNE 264 (310)
Q Consensus 261 ~~m~ 264 (310)
+++.
T Consensus 496 kR~~ 499 (656)
T KOG1914|consen 496 KRRF 499 (656)
T ss_pred HHHH
Confidence 6654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.082 Score=44.94 Aligned_cols=110 Identities=10% Similarity=0.055 Sum_probs=66.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY 170 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~ 170 (310)
...+.+..+++-|...++.|.+.. +-.|.+.|-.++.+ .+.+++|.-+|++|-++-. ++..+-|-...++.
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~--~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP--PTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC--CChHHHccHHHHHH
Confidence 444556667777777777777552 34555555555443 3557777777777776432 44456777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGML 210 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 210 (310)
..|++++|+.++++...+.-. +..|...+|-+--..|.-
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 777777777777777655332 344444444443334443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.031 Score=47.84 Aligned_cols=107 Identities=22% Similarity=0.292 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 021583 85 EFPLITVKKALKTLEN-----EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR 159 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 159 (310)
+-|-.+|-..+..|.. .+.++-....+..|++.|+..|..+|+.||+.+=|..- .|.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------------------iP~ 125 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------------------IPQ 125 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc------------------ccH
Confidence 3456677777777754 35677788888999999999999999999988765322 232
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 211 (310)
..|..+.-.|-+ +-+.+.+++++|...|+.||..+-.+|+++|++.+..-
T Consensus 126 nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 126 NVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 333333333332 34568999999999999999999999999999877653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.024 Score=44.14 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADME-----ELGVRPNVSIV 197 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~-----~~g~~p~~~ty 197 (310)
.+...++..+...|++++|..+.+.+.... |.+...|-.+|.+|...|+..+|.++|+.+. +-|+.|+..|-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344667777888999999999999999875 4777899999999999999999999998874 35999987653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.21 Score=37.59 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=70.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHH
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRT--MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE-GTPRIFFDKMISIYYN 171 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~y~~li~~~~~ 171 (310)
-.++-..|+.++|..+|+.-...|+... ...+-.+-..|...|+.++|+.+|++.....-. +.+......+--++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4456667888888888888888877654 345666777788888888888888887765210 0122223334446778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 021583 172 RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ 205 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 205 (310)
.|+.++|++.+-.... ++...|.--|..|.
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 8888888887766553 33345555555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.016 Score=38.47 Aligned_cols=64 Identities=19% Similarity=0.342 Sum_probs=49.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
.+.|++++|.++|+...... +-+...+-.+...|.+.|++++|.++++++.... ++...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 46799999999999988662 3377788889999999999999999999998874 3334455444
|
... |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.12 Score=49.81 Aligned_cols=160 Identities=11% Similarity=-0.014 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKI------------------ 149 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m------------------ 149 (310)
...|.-.|.+|+..|+.++|..+...-.+ -.||..-|..+.+......-+++|.++++..
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDF 501 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhH
Confidence 45677888999999998898888877666 3688888888877665555556666665432
Q ss_pred ----------HhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 150 ----------FLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 150 ----------~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
.+.+. ...-+|-.+=.+..+.++++.|.+.|..-.. ..|| ...||++-.+|.+.|+..+|...++
T Consensus 502 s~~~~hle~sl~~np--lq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 502 SEADKHLERSLEINP--LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred HHHHHHHHHHhhcCc--cchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 22211 2223555555566688889999888887654 5676 4889999999999999999999987
Q ss_pred h-CCCCccchheeccCcccCChhhhh--HhhhccCCChhhHHhhhchhhc
Q 021583 219 K-YPPPKWEYRYIKGKRVRIPAKPKY--ELDSATEGKTNEVETTKNPNES 265 (310)
Q Consensus 219 ~-~~p~~~~~~~~~~~~~~~~~~~~~--~li~~~~g~~~~a~~~~~~m~~ 265 (310)
+ ++-+ --++.+|. .++...-|.+++|.+.+.++..
T Consensus 578 EAlKcn------------~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 578 EALKCN------------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcC------------CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6 2211 11222332 2333367888888887766643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.03 Score=55.21 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 021583 101 EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~ 180 (310)
.+..++|+++|.+.... ..-|.++-|-+--.++.+|++.+|..+|.+.++...+ ...+|-.+-+.|..+|++-.|++
T Consensus 625 kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~--~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD--FEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh--CCceeeeHHHHHHHHHHHHHHHH
Confidence 34555666666655543 2345555555555566666666666666666655431 11246666666666666666666
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 181 IFADMEEL-GVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 181 l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
.|+...+. .-.-+......|.+++-+.|++.+|.+..
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66654433 32334555566666666666666665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.061 Score=48.71 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=74.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 021583 130 LNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLG 208 (310)
Q Consensus 130 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g 208 (310)
-..+...|++++|++.|++..+..- .+...|..+-.+|.+.|++++|+..++...+. .| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 4566788999999999999998753 45568999999999999999999999998874 35 5678889999999999
Q ss_pred CHHHHHHHHHh
Q 021583 209 MLDKYEKLKKK 219 (310)
Q Consensus 209 ~~~~a~~l~~~ 219 (310)
++++|...|++
T Consensus 85 ~~~eA~~~~~~ 95 (356)
T PLN03088 85 EYQTAKAALEK 95 (356)
T ss_pred CHHHHHHHHHH
Confidence 99999999975
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.43 Score=38.61 Aligned_cols=133 Identities=9% Similarity=-0.036 Sum_probs=103.0
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH
Q 021583 81 AWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI 160 (310)
Q Consensus 81 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 160 (310)
+....|++..--.|-++..+.|++.+|...|++-..--+.-|....-.+-++....+++..|...++++.+.+-.-.+..
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 34667888888889999999999999999999988666778888888889999999999999999999988753211123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
+.-.+-.+|...|+...|+.-|+..... -|+...-...-.-+.+.|+.+++..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 5666778888999999999999988763 4655333333345677887776643
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.19 Score=40.31 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSM 199 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~ 199 (310)
....|..+...|...|++++|...|++..+..-.+.. ...|..+-..|.+.|++++|.+.+.+..+. .| +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 3566788888899999999999999998876442222 357999999999999999999999998764 35 4566777
Q ss_pred HHHHHHhcCC
Q 021583 200 MGNAFQKLGM 209 (310)
Q Consensus 200 li~~~~~~g~ 209 (310)
+..+|...|+
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 7777877666
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.14 Score=40.28 Aligned_cols=86 Identities=7% Similarity=-0.021 Sum_probs=51.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 131 NALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGML 210 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 210 (310)
..+...|++++|.++|+-+..... -+..-|-.|-..+-..|++++|...|........ -|...+-.+-.++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 334556666666666666665542 3334555666666666666666666666655431 2456666666666666777
Q ss_pred HHHHHHHHh
Q 021583 211 DKYEKLKKK 219 (310)
Q Consensus 211 ~~a~~l~~~ 219 (310)
+.|.+-|+.
T Consensus 120 ~~A~~aF~~ 128 (157)
T PRK15363 120 CYAIKALKA 128 (157)
T ss_pred HHHHHHHHH
Confidence 666666643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.35 Score=50.00 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
..|.+|...|.+.+.+++|-++++.|.+. ..-....|...+..+.++.+-+.|..++.+..+.--+.-..-.-.-.+.-
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 45667777777777777777777777644 22455667777777777777777777766655431100000112222222
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
-.+.|+.+.+..+|+...... | -.-.|+..|+.=.+.|+.+.+..+|++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 235667777777777666532 2 235566667777777777777777765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.049 Score=35.73 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=31.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 131 NALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
..+.+.|++++|++.|++..+.. |.+...|..+-..+...|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666554 23334566666666666666666666666543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.21 Score=37.58 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=67.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 021583 130 LNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN----VSIVSMMGNAF 204 (310)
Q Consensus 130 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~ty~~li~~~ 204 (310)
-.++-..|+.++|..+|++-...|+..... ..+-.+-.+|...|+.++|..++++..... |+ ......+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 345667899999999999999998853332 377788899999999999999999987642 43 22223344577
Q ss_pred HhcCCHHHHHHHHH
Q 021583 205 QKLGMLDKYEKLKK 218 (310)
Q Consensus 205 ~~~g~~~~a~~l~~ 218 (310)
...|+.++|..++-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 88999999988863
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.18 Score=43.62 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM----GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFD 163 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~ 163 (310)
..|...+..+.+.|++++|...|+.+.+. .|+. .++--+-..|...|++++|...|+.+.+..-..+. ...+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555555667777777777776644 1322 34445566666777777777777776654221111 11333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 164 KMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
.+...|...|+.++|.++|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455566777777777766654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.74 Score=39.05 Aligned_cols=147 Identities=11% Similarity=0.048 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 021583 69 KEEVYGALDSFIA---WE-LEFPLI-TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLL-LNALAEDGRLDEA 142 (310)
Q Consensus 69 ~~~~~~~~~~m~~---~~-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~l-l~~~~~~g~~~~A 142 (310)
.+++.+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...- |+..-...| -.-+-..|..++|
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhH
Confidence 4555666666552 34 556664 46777777788899999999999988663 554333333 2234456889999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
+++++.+.+.. |.+.++|--=+...-..|+..+|++-+++..+. +.-|...|.-|..-|...|++++|.-.++++
T Consensus 106 ~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 106 IEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999886 577788888888888889888998888887765 3468999999999999999999999998873
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.79 Score=46.24 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=77.7
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH---------------
Q 021583 83 ELEF-PLITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTMGTYFLLLNALAEDGRLDEAEEL--------------- 145 (310)
Q Consensus 83 ~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~~~A~~~--------------- 145 (310)
+..| +...+..|+..+...+++++|.++.+.-.+.. -.+..+-|..+ .+...++.+++.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHH
Confidence 4444 35677788888878888888888877544331 11222222222 34444444443333
Q ss_pred ---HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 146 ---WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 146 ---~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.|.+.+ .+...+-.|..+|-+.|+.++|..+++++.+.. .-|+...|.+...|... ++++|.+++.+
T Consensus 103 e~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 103 EHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 22222211 122355566677777788888888888888765 22577788888888888 88888777753
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.047 Score=52.58 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
+.++..+++.+.+++.. ..-|..+...|...|+++.|.++|-+- ..++--|..|.++|+|++|.++-++
T Consensus 748 w~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHH
Confidence 44556666665554421 234666677777778888887777541 2345567778888888877777655
Q ss_pred HHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 149 IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 149 m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
..... ...+.|-+-..-+-+.|++.+|+++|-... .|+. .|..|-+.|..|...++.++..|+
T Consensus 817 ~~~~e---~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 817 CHGPE---ATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred hcCch---hHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 44321 222456666666667777777777665433 2443 234566667777766666654444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.067 Score=50.00 Aligned_cols=112 Identities=11% Similarity=0.061 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 021583 103 DWKRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEI 181 (310)
Q Consensus 103 ~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l 181 (310)
.+.+..++|-++- ..+.++|...++.|--.|--.|++++|...|+...+.. |-|...||-|=.++++..+.++|+..
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHH
Confidence 3455666666655 66667899999999999999999999999999988763 45556999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 182 FADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 182 ~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
|++..+ ++|+- ...-.|--+|...|.+++|.+.|-
T Consensus 487 Y~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 487 YNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999776 57763 444455566999999999988864
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.24 Score=46.39 Aligned_cols=134 Identities=11% Similarity=0.012 Sum_probs=100.0
Q ss_pred cHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCCHH
Q 021583 68 VKEEVYGALDSFIAWELEF-PLITVKKALKTLENEKDWKRIIQVTKWMLSK--GQ---G-RTMGTYFLLLNALAEDGRLD 140 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~---~-p~~~ty~~ll~~~~~~g~~~ 140 (310)
..+.|.+.|.+.. ++-| |+...+-+--.....+.+.+|..+|+..... .+ + .-.-+++.|-++|.+.+..+
T Consensus 395 n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 3444555555443 4444 5666776666666778899999999986621 11 1 13456889999999999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 141 EAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 141 ~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 207 (310)
+|...|++-.... +.+..+|.++--.|...|+++.|.+.|..-. .+.||-.+...++..+...
T Consensus 473 eAI~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 473 EAIDYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 9999999988775 3666799999999999999999999999855 4789887777777755543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.049 Score=35.75 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
+-..+.+.|++++|.+.|+...+.. .-+...+..+-..+...|++++|...|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467889999999999999999775 336788888899999999999999999998765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.18 Score=43.99 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCCCCh
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWML----SKGQGRT--MGTYFLLLNALAED-GRLDEAEELWTKIFLD----HLEGTP 158 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~p~--~~ty~~ll~~~~~~-g~~~~A~~~~~~m~~~----~~~~~~ 158 (310)
.|......|.+. ++++|.+.++... ..| .|+ ..++..+-..|-.. |++++|.+.|++-.+. +. +..
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~~~ 153 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-PHS 153 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hhh
Confidence 455555555444 7777777777644 233 233 34666677778888 8999999999876543 32 122
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheec
Q 021583 159 R-IFFDKMISIYYNRGMHEKMFEIFADMEELGV-----RPNV-SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIK 231 (310)
Q Consensus 159 ~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~-----~p~~-~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~ 231 (310)
. .++..+...+.+.|++++|.++|++....-. +++. ..|-..+-++...|+.-.|.+.|++.......|..
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-- 231 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-- 231 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--
Confidence 2 3788899999999999999999999876432 2233 23334445777889999999998873322111222
Q ss_pred cCcccCChhhhhHhhhc-cCCChhhHHhhhch
Q 021583 232 GKRVRIPAKPKYELDSA-TEGKTNEVETTKNP 262 (310)
Q Consensus 232 ~~~~~~~~~~~~~li~~-~~g~~~~a~~~~~~ 262 (310)
.....+...|+++ ..|+.+...+.+..
T Consensus 232 ----s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 232 ----SREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp ----SHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred ----cHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2234556678888 77777666555543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.1 Score=42.34 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC--
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTK--------WMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD---HL-- 154 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~---~~-- 154 (310)
....-.++......|+++.|.+++. .+.+.+..|..+ ..++..+.+.++.+.|-+++++-... ..
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence 4455677788889999999999999 666777777655 45666677777766666666554422 11
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCcc
Q 021583 155 EGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKW 225 (310)
Q Consensus 155 ~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~ 225 (310)
...-..+|--+...-.+.|..++|..+++++.+.. .+|..+...++.+|++. +.++|+.+-+.+.|...
T Consensus 454 s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~~ 522 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLKG 522 (652)
T ss_pred chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCccc
Confidence 01112356666667778999999999999999754 46889999999999998 78899999888766543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.098 Score=34.67 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG-MHEKMFEIFADM 185 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g-~~~~a~~l~~~m 185 (310)
..+|..+-..+...|++++|+..|++..+.. |.+...|..+-.+|...| ++++|++.++.-
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3445555555555555555555555555543 233335555555555555 455555555543
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.13 Score=45.67 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..+.+..|.-+...|+...|.++-.+. + -|+..-|-.-|.+|+..++|++-+++.+. +. . .+.|-.++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---s-PIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---S-PIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---C-CCChHHHHH
Confidence 346667777777888887777775443 2 37778888888888888888887776543 11 1 256888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l 216 (310)
+|.+.|+..+|..++.. +. +.--+..|.+.|++.+|.+.
T Consensus 246 ~~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHH
Confidence 88888888888887776 22 34556677888888887666
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.3 Score=46.02 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH--HHHHHH
Q 021583 93 KALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK--MISIYY 170 (310)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~--li~~~~ 170 (310)
+=++-+.+.+++++|....+.+...+ +-|...+.+-+-++.+.+.+++|+++.+.=. . . .++|. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~--~--~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---A--L--LVINSFFFEKAYC 88 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---h--h--hhcchhhHHHHHH
Confidence 34555666667777777777666554 4445666666666667677777764433211 1 0 11222 244444
Q ss_pred --HcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 171 --NRGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 171 --~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+.+..|+|.+.++ |+.++. .+...-...|-+.|++++|.++|+.
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~ 135 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQH 135 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4666677666666 333332 2444444455666777777777654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.077 Score=36.21 Aligned_cols=60 Identities=23% Similarity=0.272 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGTP-RIFFDKMISIYYNRGMHEKMFEIFAD 184 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~ 184 (310)
+|+.+-..|...|++++|++.|++..+. |-..+. ..+++.+-..|...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444555555555555555444322 100011 12455555555555555555555444
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.3 Score=37.88 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=102.3
Q ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 021583 58 LVTCIKGLS-NVKEEVYGALDSFIAWELEFPL--ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALA 134 (310)
Q Consensus 58 ~~~~l~~~~-~~~~~~~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~ 134 (310)
+..+...+. +..+.|...|+++...--.... ...-.+..+|.+.++++.|...|+...+.--.....-|.-.+.|.+
T Consensus 36 Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 36 YATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 344444433 5566668888888764322211 1223566788999999999999999885532222345555555554
Q ss_pred h--c---------------CC---HHHHHHHHHHHHhcCCCCChH-HH-----------------HHHHHHHHHHcCCHH
Q 021583 135 E--D---------------GR---LDEAEELWTKIFLDHLEGTPR-IF-----------------FDKMISIYYNRGMHE 176 (310)
Q Consensus 135 ~--~---------------g~---~~~A~~~~~~m~~~~~~~~~~-~~-----------------y~~li~~~~~~g~~~ 176 (310)
. . .+ ..+|.+.|+++.+.- |++ .. --.+..-|.+.|.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 2 1 12 245667777777652 111 10 112334588999999
Q ss_pred HHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 177 KMFEIFADMEEL--GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 177 ~a~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|..-++.+.+. +.+......-.++.+|...|..++|..+...
T Consensus 193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999999875 3444457778899999999999999887654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.21 Score=38.78 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL-----DHLE 155 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~-----~~~~ 155 (310)
.+...++..+...|+++.|.++.+...... +.|...|..+|.+|...|+..+|.+.|+++.+ .|+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 466777888888999999999999988663 56788999999999999999999999988763 4774
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.54 Score=43.38 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=72.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 82 WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
.|.-|-.-.|...|..=.+.+++|++..+|+...+.+ +-|.++|...-..=..-|+.+.|..+|.-..+......|...
T Consensus 431 IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 431 IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 3556666666666666666777777777777777663 345677776666666677777777777766655443355567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
|-+.|..=...|.+++|..+++.+.+
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 77777777777788888888777765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.17 Score=43.77 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 021583 133 LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~ 211 (310)
..+.+++++|+..|.+.++.. |.+.+-|..=-.+|++.|.++.|++=.+.-.. +-|. ..+|..|-.+|...|++.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 345566666666666666542 34445566666666666666666665554433 3343 356666666666666666
Q ss_pred HHHHHHHh---CCCCccchh
Q 021583 212 KYEKLKKK---YPPPKWEYR 228 (310)
Q Consensus 212 ~a~~l~~~---~~p~~~~~~ 228 (310)
+|.+.|++ +.|+..+|.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhccCCCcHHHH
Confidence 66666654 345444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.037 Score=37.84 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQ-GRT-MGTYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
..+|+.+-..|.+.|++++|++.|++..+. |- .|+ ..++..+-..|...|+.++|++.+++-.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357899999999999999999999987633 21 132 67888899999999999999999987654
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.12 Score=34.20 Aligned_cols=65 Identities=15% Similarity=0.064 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDG-RLDEAEELWTKIFLD 152 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g-~~~~A~~~~~~m~~~ 152 (310)
+...|..+-..+.+.|++++|...|....+.. +-+...|..+-.+|.+.| ++++|++.|++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35678888999999999999999999988763 346788899999999999 799999999987653
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.59 Score=41.13 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLEN--E----KDWKRIIQVTKWMLSKGQ---GRTMGTYFLLLNALAEDGR- 138 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----~~~~~a~~~~~~m~~~g~---~p~~~ty~~ll~~~~~~g~- 138 (310)
.+.+..+.+.|.+.|.+-+..+|-+....... . ....++.++|+.|++... .++-+.+.+||.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44467778888999998888777664444433 2 235679999999996643 3566788888766 3333
Q ss_pred ---HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 139 ---LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM---HEKMFEIFADMEELGVRPNVSIVSMMGN 202 (310)
Q Consensus 139 ---~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~~~ty~~li~ 202 (310)
.+.++.+|+.+.+.|+..-+..-+-+-|-+++.... ..++.++++.+.+.|+++....|..+--
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 367899999999989865555555555555554333 4578889999999999998877776543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.8 Score=40.08 Aligned_cols=141 Identities=9% Similarity=-0.002 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
.|-++|+...... .-++..|-..+..=.+++++..|..+|+.....=-..| ..|--.+.+=-.-|++..|.++|++-.
T Consensus 91 RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 91 RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4566666655544 33455566666666677777777777776543311112 122222333334466777777777666
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
+- .|+.-.|++.|+.=.+...++.|..+++...-.. |+..+|.-..+-=.+.|.+..|..+|+
T Consensus 169 ~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 169 EW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred cC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 54 2555577777777777777777777777765432 666666665555555666665555553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.17 Score=44.23 Aligned_cols=200 Identities=18% Similarity=0.172 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCChH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLS----KGQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGTPR 159 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~ 159 (310)
..|...-+.|-..|++++|.+.|..... .+-... ...|......|-+. ++++|.+.+++..+. |- ++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~--~~~ 112 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR--FSQ 112 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc--HHH
Confidence 4577777777778888887777776432 222111 23444444555444 888888887765543 32 222
Q ss_pred --HHHHHHHHHHHHc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchhee
Q 021583 160 --IFFDKMISIYYNR-GMHEKMFEIFADMEE----LGVRPN--VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYI 230 (310)
Q Consensus 160 --~~y~~li~~~~~~-g~~~~a~~l~~~m~~----~g~~p~--~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~ 230 (310)
..+..+-..|-.. |++++|.+.|..-.+ .| .+. ..++.-+...+.+.|++++|.++|+++... .+
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-----~l 186 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-----CL 186 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-----CC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----hh
Confidence 2677777777777 899999999888653 34 222 366778888899999999999999873111 01
Q ss_pred ccCcc--cCChhhhhHhhhc-cCCChhhHHhhhchhhcC--CCC--Cchhhhhhhhhhhhh----hhHHHHHHhhhcc
Q 021583 231 KGKRV--RIPAKPKYELDSA-TEGKTNEVETTKNPNESS--EEP--EAAANLNESLEETEA----NTKELLEEADAIS 297 (310)
Q Consensus 231 ~~~~~--~~~~~~~~~li~~-~~g~~~~a~~~~~~m~~~--~~~--p~~~~~~~ll~~~~~----~~~~l~~~a~~~~ 297 (310)
..... ....+...+++=. ..|+...|.+.++..... +.. ........|++...+ .....+.+.|.++
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 11111 1122233333333 789999999999887543 222 234556666655554 4445555555554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.97 Score=34.69 Aligned_cols=110 Identities=11% Similarity=0.043 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN 171 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~ 171 (310)
..++..+.+.+.+.....+++.+...+ ..+...++.++..|++.. .++.++.++. .. +......++.-|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~-----~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KS-----NHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--cc-----ccCCHHHHHHHHHH
Confidence 345555656666666666666666555 255566666677766543 3333344432 11 11223345555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHh
Q 021583 172 RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL-GMLDKYEKLKKK 219 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~a~~l~~~ 219 (310)
.+.++++.-++..+.. |.-.+..+... ++.+.|.+.+++
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 6666666666655432 22223333333 556666665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.4 Score=34.69 Aligned_cols=95 Identities=8% Similarity=-0.008 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
..=.+-..+...|++++|..+|+-..... .-+..-|-.|--.+-..|++++|...|........ .+...+-.+-.+|
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHHH
Confidence 33455666788999999999999987663 22344445566666677999999999999988875 3445677788889
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 021583 170 YNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~ 187 (310)
...|+.+.|.+-|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999997664
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.48 Score=41.08 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE-----LGVRPNVSIV 197 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~ty 197 (310)
..++..++..+..+|+.+.+.+.++++.... |.+...|-.+|.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3566788999999999999999999999886 46778999999999999999999999998865 5899998888
Q ss_pred HHHHHHH
Q 021583 198 SMMGNAF 204 (310)
Q Consensus 198 ~~li~~~ 204 (310)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 7777763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.43 Score=46.31 Aligned_cols=106 Identities=23% Similarity=0.399 Sum_probs=69.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKM 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a 178 (310)
...+.|.+|..+++.+.... .-..-|.-+.+.|+..|+++.|+++|.+- + .++--|..|.+.|+|+.|
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---~-------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---D-------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---c-------hhHHHHHHHhccccHHHH
Confidence 34555666666666655442 22344666777888888888888887542 2 256667778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 179 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
.++-.+. .|-+.....|.+-..-+-+.|++.+|++++-
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 8876553 3333345666666666777777777777753
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.1 Score=39.24 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=101.8
Q ss_pred CcHHHHHHHHHHHHH-cCCCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHh
Q 021583 67 NVKEEVYGALDSFIA-WELEFPL-----ITVKKALKTLEN----EKDWKRIIQVTKWMLSKGQGRTMGTYFLL-LNALAE 135 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~-~~~~p~~-----~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~ty~~l-l~~~~~ 135 (310)
+..+...+.+.+-.+ .|+.-.. ..|+..+..++- ....+.|.++++.+.+. -|+..-|... -+.+..
T Consensus 202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERL 279 (468)
T ss_pred CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 445555555555433 3443322 245555555544 45778899999999876 5887777665 455667
Q ss_pred cCCHHHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH--
Q 021583 136 DGRLDEAEELWTKIFLD--HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF-QKLGML-- 210 (310)
Q Consensus 136 ~g~~~~A~~~~~~m~~~--~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~~-- 210 (310)
.|++++|.+.|++.... ..+......|--+.-.+.-.+++++|.+.|..+.+.. .++..+|.-+.-+| ...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchh
Confidence 89999999999976642 2222333456667777888999999999999999743 34556666555553 456777
Q ss_pred -----HHHHHHHHhC
Q 021583 211 -----DKYEKLKKKY 220 (310)
Q Consensus 211 -----~~a~~l~~~~ 220 (310)
++|..+|+++
T Consensus 359 ~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 359 AKEHKKEAEELFRKV 373 (468)
T ss_pred hhhhHHHHHHHHHHH
Confidence 8888998764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.8 Score=42.22 Aligned_cols=66 Identities=11% Similarity=-0.062 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM----GTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
+.+...++.+-.+|.+.|++++|...|+.-.+. .|+. .+|..+-.+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345788999999999999999999999997765 4653 46999999999999999999999998875
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.1 Score=38.23 Aligned_cols=132 Identities=10% Similarity=0.020 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH--
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS-- 167 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~-- 167 (310)
.-+.+++.+.-.|.+.-..+++++.++..-+.+....+.|...-.+.||.+.|...|++..+..-+ .+..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK-LDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh-hhccchhHHHHhh
Confidence 345666777777888889999999998877778888899999999999999999999988766542 55556666554
Q ss_pred ---HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 168 ---IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 168 ---~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
.|.-.+++.+|...+.+..... .-|+..-|.=.-++.-.|+...|.+.++.+.|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445667777877777765432 113344444444445568899999998876543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.8 Score=42.54 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
..|+.+-++-.+.|.+.+|.+-|-+ ..+...|--+|....+.|.+++..+.+...+++.-+|... +.||.+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyik-------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK-------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHh-------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 4555555665566665555544422 1222456666666666666666666665555555555443 345556
Q ss_pred HHhcCCHHHHHHHH
Q 021583 204 FQKLGMLDKYEKLK 217 (310)
Q Consensus 204 ~~~~g~~~~a~~l~ 217 (310)
|++.+++.+.+.+.
T Consensus 1176 yAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHhchHHHHHHHh
Confidence 66666555554444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.83 Score=45.20 Aligned_cols=105 Identities=16% Similarity=0.226 Sum_probs=52.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHH
Q 021583 100 NEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNAL--AEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEK 177 (310)
Q Consensus 100 ~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~ 177 (310)
..+++..|........+. .|+ ..|...++++ .+.|+.++|..+++.....+. .+..|-.++-..|...++.++
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhH
Confidence 344555555555554433 133 2233333333 244556666655555554443 344556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 021583 178 MFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 178 a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 211 (310)
|..+|+...+ .-|+..-...+..+|.+.+.+.
T Consensus 96 ~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 96 AVHLYERANQ--KYPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHH
Confidence 6666655433 2355544455555555554443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.19 Score=33.61 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=30.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 131 NALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
..|.+.+++++|.++++++.+.+- .+...|...-..|.+.|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345555666666666666555532 2333555555555566666666666665554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.1 Score=38.76 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C-CCCHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIFFDKMISIYYNRGMHEKMFEIFADMEELG-V-RPNVSIVSM 199 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g-~-~p~~~ty~~ 199 (310)
...|...+..+.+.|++++|...|+.+.+..-... ....+-.+-..|...|++++|...|..+...- - ......+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 46677777777788999999999999998742111 01367788889999999999999999998642 1 112344455
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 021583 200 MGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 200 li~~~~~~g~~~~a~~l~~~~ 220 (310)
+..++...|+.++|...|+++
T Consensus 223 lg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 567788999999999998763
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.28 Score=32.82 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
-..|.+.++++.|.++++.+...+ +.+...+...-..+.+.|++++|.+.|++..+.+-
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 356889999999999999998773 44677788888899999999999999999987753
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.1 Score=39.82 Aligned_cols=122 Identities=13% Similarity=0.099 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM-ISIYY 170 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l-i~~~~ 170 (310)
.++..++.-..++++++-.++.++..-.--|.+-|| +.++++..|...+|+++|-+.....+ .+..+|-.+ ..+|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i--kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI--KNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh--hhhHHHHHHHHHHHH
Confidence 344445555556777777777766554444444443 56777777778888888777665555 455555544 45667
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHh
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSI-VSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++++.+-|+.++-.+.. .-+..+ ...+.+-|-+++.+--|-+.|+.
T Consensus 440 ~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred hcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 77777777766555442 122322 23344456667776666666554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=3.4 Score=42.23 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=99.6
Q ss_pred CCcHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhc
Q 021583 66 SNVKEEVYGALDSFIAWELEFP----LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQ-GRTMGTYFLLLNALAED 136 (310)
Q Consensus 66 ~~~~~~~~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~ty~~ll~~~~~~ 136 (310)
.+..+.+...+++..+.--..+ ....+.+-..+...|++++|...+++.... |- ..-..++..+-..+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 3445555666666544211111 234566666778899999999999887632 11 11134556667788899
Q ss_pred CCHHHHHHHHHHHHhc----CCCC-C-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHh
Q 021583 137 GRLDEAEELWTKIFLD----HLEG-T-PRIFFDKMISIYYNRGMHEKMFEIFADMEEL--GVRP--NVSIVSMMGNAFQK 206 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~----~~~~-~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p--~~~ty~~li~~~~~ 206 (310)
|++++|...+++..+. +... + ....+..+-..+...|++++|...+.+.... ...+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999999998876553 2210 1 1234555666677889999999998887542 1112 23455556677888
Q ss_pred cCCHHHHHHHHHh
Q 021583 207 LGMLDKYEKLKKK 219 (310)
Q Consensus 207 ~g~~~~a~~l~~~ 219 (310)
.|+.++|.+.+++
T Consensus 625 ~G~~~~A~~~l~~ 637 (903)
T PRK04841 625 RGDLDNARRYLNR 637 (903)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999888765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.48 Score=45.77 Aligned_cols=144 Identities=9% Similarity=0.043 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC----------------------CCCH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-----GQ----------------------GRTM 123 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~----------------------~p~~ 123 (310)
+|..+..+..+ -+||..-|..+.......--+++|.++++....+ |. ..-.
T Consensus 442 kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 442 KAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred hHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccch
Confidence 34444443333 4677888877777776666677777777764322 10 0012
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
.+|=.+--+..+.++++.|.+.|..-..- .|.+...||++-.+|.+.|+..+|...+.+-.+.+.. +...|-..+-.
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlv 596 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLV 596 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhh
Confidence 22333333445778889999999887754 3355569999999999999999999999998887733 45667777778
Q ss_pred HHhcCCHHHHHHHHHh
Q 021583 204 FQKLGMLDKYEKLKKK 219 (310)
Q Consensus 204 ~~~~g~~~~a~~l~~~ 219 (310)
..+-|.+++|.+.+.+
T Consensus 597 svdvge~eda~~A~~r 612 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhcccHHHHHHHHHH
Confidence 8899999999999876
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.91 Score=41.89 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR---IFFDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 121 p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
.+...++.+-.+|.+.|++++|+..|++-.+.+- .+. .+|..+-.+|.+.|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P--d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP--NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999887753 222 46999999999999999999999998874
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.2 Score=45.00 Aligned_cols=127 Identities=10% Similarity=0.079 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..++-.+..+|-+.|+.++|..+|+++.+.. .-|..+.|.+-..|... ++++|++++.+..++.+. .--|+.+..
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~---~kq~~~~~e 190 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK---KKQYVGIEE 190 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh---hhcchHHHH
Confidence 3577788889999999999999999999886 66788999999999998 999999999888776441 112222222
Q ss_pred ---HHH--HcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 168 ---IYY--NRGMHEKMFEIFADMEEL-GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 168 ---~~~--~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+| ...+++.-.++.+.+... |..--..++-.+-..|....+++++.++++.
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 222 233455556666666544 5444556777777888888888888888875
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.67 Score=40.77 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCC----HHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHHHcCC-
Q 021583 104 WKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE--DGR----LDEAEELWTKIFLDHL--EGTPRIFFDKMISIYYNRGM- 174 (310)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~--~g~----~~~A~~~~~~m~~~~~--~~~~~~~y~~li~~~~~~g~- 174 (310)
+++..++++.|.+.|++-+.++|-+..-.+.. ..+ ...|.++|+.|++.+- .....+++..|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56678899999999999999888774333333 333 5689999999999853 22344678888776 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHh-----
Q 021583 175 ---HEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYEL----- 245 (310)
Q Consensus 175 ---~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~l----- 245 (310)
.+.++..|+.+...|...+ ..-+.+-+-++.....-+++.++.+- ++.+++.++++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l-------~~~l~~~~~kik~~~yp~lGlLal 228 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL-------YNALKKNGVKIKYMHYPTLGLLAL 228 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH-------HHHHHHcCCccccccccHHHHHHh
Confidence 4667888999999888764 43444444444443333333333222 5566666777666666532
Q ss_pred hhccC-CChhhHHhhhchhhc-CCCCCchhhhhhhh
Q 021583 246 DSATE-GKTNEVETTKNPNES-SEEPEAAANLNESL 279 (310)
Q Consensus 246 i~~~~-g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll 279 (310)
+.... ...+...++.+.+.. ++.. -.+.++.++
T Consensus 229 l~~~~~~~~~~i~ev~~~L~~~k~~~-~~k~~~~li 263 (297)
T PF13170_consen 229 LEDPEEKIVEEIKEVIDELKEQKGFG-WDKDFRFLI 263 (297)
T ss_pred cCCchHHHHHHHHHHHHHHhhCcccC-hhHHHHHHH
Confidence 22211 334445555544432 2222 344555555
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.9 Score=36.46 Aligned_cols=145 Identities=11% Similarity=-0.013 Sum_probs=99.5
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 58 LVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEK-DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED 136 (310)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~ 136 (310)
+..++....+..++|.....+..+.+ +-+..+|+.--..+.+.| +++++++.++.+.+..- -+..+|+..-..+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 33344444445566677777777655 223456666656666666 68999999999887642 3344566554445555
Q ss_pred CC--HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 137 GR--LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 137 g~--~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 207 (310)
|+ .++++++++++.+..- .+..+|+-.-..+.+.|+++++++.++.+.+.... |...|+.....+.+.
T Consensus 120 ~~~~~~~el~~~~kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred CchhhHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 55 3678999999997764 56678999999999999999999999999987654 455666655555444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.7 Score=40.31 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=94.3
Q ss_pred CCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 85 EFPLIT--VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM-GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 85 ~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
+|+... +--++..|-+.|+++.|...++....+ .|+. .-|.+=-+.+..+|++++|..++++..+... +|...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~--aDR~I 441 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT--ADRAI 441 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc--hhHHH
Confidence 455443 445678888999999999999876654 6775 5566667889999999999999999998765 45443
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----------HHHHhcCCHHHHHHHHHh
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMG----------NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li----------~~~~~~g~~~~a~~l~~~ 219 (310)
=.--..-..+++++++|.++.....+.|. +..-+-+-+ .+|.+.|++..|++-|..
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 33566667789999999999998887775 333322222 346778888888777654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.6 Score=37.39 Aligned_cols=127 Identities=11% Similarity=-0.040 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHH
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLN-----ALAEDGRLDEAEELWT 147 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~-----~~~~~g~~~~A~~~~~ 147 (310)
..++.+.++.+-+-+..-...|.+.-.+.|+.+.|...|+..++..-+.|..+++.++. .|.-+.+...|...|+
T Consensus 197 ~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 197 VDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 45566666666566777888888888999999999999999887766677666666654 4556678889999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
+..++.- .+.+.-|+=.-...-.|+...|.+..+.|.+. .|...+-++++-.
T Consensus 277 ~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~n 328 (366)
T KOG2796|consen 277 EILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFN 328 (366)
T ss_pred hccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHH
Confidence 9988764 33333444333344478999999999999874 5666555544433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.7 Score=37.77 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=79.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHH
Q 021583 97 TLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHE 176 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~ 176 (310)
-+.+.+++.+|++.|...++. ..-|.+-|+.=-.+|.+-|..+.|++=.+.-.... +.-..+|..|=.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 346788999999999998876 24567888888999999999999998887766543 233459999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 021583 177 KMFEIFADMEELGVRPNVSIVSM 199 (310)
Q Consensus 177 ~a~~l~~~m~~~g~~p~~~ty~~ 199 (310)
+|++.|..-.+ +.|+-.+|..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 99999888665 7888777765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.84 E-value=6.7 Score=37.90 Aligned_cols=55 Identities=15% Similarity=-0.019 Sum_probs=32.4
Q ss_pred hhhhHhhhc-----cCCChhhHHhhhchhhcCCCCCchhhhhhhh-hhhhhhhHHHHHHhhhc
Q 021583 240 KPKYELDSA-----TEGKTNEVETTKNPNESSEEPEAAANLNESL-EETEANTKELLEEADAI 296 (310)
Q Consensus 240 ~~~~~li~~-----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~l~~~a~~~ 296 (310)
..|++.+.- .....+.|.++|+.-+. +.||....+=.|+ ..-+... .|.++|..+
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~-GLar~amsi 608 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEH-GLARHAMSI 608 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 455554443 67778999999998877 7777544443343 3333322 455554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.7 Score=35.15 Aligned_cols=101 Identities=11% Similarity=-0.074 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI--FFDKMISIYYNRGMHEKMFEIFADMEEL---GVRPNVSIV 197 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~y~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~ty 197 (310)
...+..+.+.|++.|+.++|.+.|.++.+.... +... .+-.+|....-.+++..+...+...... |-.++...-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 356677788888888888888888888776552 2222 5677777777888888888777766543 222222221
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHhCCCCc
Q 021583 198 SMMGNA--FQKLGMLDKYEKLKKKYPPPK 224 (310)
Q Consensus 198 ~~li~~--~~~~g~~~~a~~l~~~~~p~~ 224 (310)
-....+ +...+++.+|-++|-...++.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 112222 345789999999987765554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=93.59 E-value=5.1 Score=35.72 Aligned_cols=125 Identities=11% Similarity=0.052 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM-GTYFLLLNALAEDG-RLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
+..+-..+...++.++|+.+.++..+. .|+- .+|+.--..+.+.| ++++++.+++++.+.+- .+-.+|+.--..
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHH
Confidence 334444455667888999999988865 2433 34554444555556 68999999999998764 343467755545
Q ss_pred HHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 169 YYNRGMH--EKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 169 ~~~~g~~--~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
+-+.|+. +++..+++.+.+..-+ +.+.|+...-++...|+++++++.++++
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5556653 6788888888865422 6788998888899999999999998763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=5.2 Score=38.24 Aligned_cols=121 Identities=11% Similarity=0.052 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 021583 70 EEVYGALDSFIAWELEFP-LITVKKALKTLENEK--------DWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAEDGRL 139 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~ 139 (310)
+++..+|++..+.. |+ ...|..+..+|.... +...+.+........ ....+...|.++--.....|++
T Consensus 359 ~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 359 NKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 34567777766654 44 344444433332221 223344444433332 2344567788776666678999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIV 197 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty 197 (310)
++|...+++..+.+ ++...|..+-..|...|+.++|.+.+++-.. ..|...||
T Consensus 437 ~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 437 DEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 99999999999876 3456899999999999999999999988665 34554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=1.9 Score=42.70 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHC---------
Q 021583 128 LLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADM----------EEL--------- 188 (310)
Q Consensus 128 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m----------~~~--------- 188 (310)
.|=+.|-..|.|++|.++-+.=-+.+++ .||.....-+-..++.+.|++.|+.- ...
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 3344455556666666665544443332 35555555555566666666655431 111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 189 GVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 189 g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
.-+-|...|.-+-..+-..|++|.|+.+|.
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 122344445555555556677777776654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=2.8 Score=39.59 Aligned_cols=141 Identities=9% Similarity=-0.016 Sum_probs=103.5
Q ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 71 EVYGALDSFIA-WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 71 ~~~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
++.+.|.++.. .+..+|....+.|=-.|--.|.|++|.+-|+..... +| |-..||-|--.++...+..+|.+.|.+
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 34666666554 465577777777777777889999999999997755 45 568899999999999999999999999
Q ss_pred HHhcCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHH---HHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 149 IFLDHLEGTPR-IFFDKMISIYYNRGMHEKMFEIFADM---EELG------VRPNVSIVSMMGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 149 m~~~~~~~~~~-~~y~~li~~~~~~g~~~~a~~l~~~m---~~~g------~~p~~~ty~~li~~~~~~g~~~~a~~l 216 (310)
.++.. |+- .++-.|--+|.+.|.+++|.+.|-.. .+++ ..++...|.+|=.++...++.|.+.+.
T Consensus 490 ALqLq---P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 490 ALQLQ---PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhcC---CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 88763 222 25555666789999999998877653 3332 223446788877778888887765444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.24 E-value=2.2 Score=42.27 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++...|-.|+.++|-++-++ .-|....-.|.+-|-..|++.+|.++|-+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred heeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33334444555555444443 23555556677778888888888888744
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.3 Score=43.72 Aligned_cols=129 Identities=15% Similarity=0.071 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 021583 130 LNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 130 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 209 (310)
|.-|....++.+--.+++.+.+.|+ .+...-..||++|.+.++.++..++.+.-. .|.. .+-....+..|.+.+-
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl--a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL--ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc--ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 3334444444444455555555555 233344555666666666655555554433 2211 1112344455555555
Q ss_pred HHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 210 LDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 210 ~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+++|..+-.+. ....-..+.+++- .|++++|.+++..+.-+...+....|...|
T Consensus 479 l~~a~~LA~k~---------------~~he~vl~ille~-~~ny~eAl~yi~slp~~e~l~~l~kyGk~L 532 (933)
T KOG2114|consen 479 LDEAELLATKF---------------KKHEWVLDILLED-LHNYEEALRYISSLPISELLRTLNKYGKIL 532 (933)
T ss_pred HHHHHHHHHHh---------------ccCHHHHHHHHHH-hcCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 55555543221 1123333444444 789999999999998888888888888777
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.06 E-value=4.8 Score=36.04 Aligned_cols=115 Identities=9% Similarity=-0.038 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 021583 104 WKRIIQVTKWMLSKGQGRTMGTY-FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIF 182 (310)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~ty-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~ 182 (310)
.+-|.+.|+-.-+++..-|+..- -++...+.-.-++++++-.+...+.--. ..+...| .+..+++..|...+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Ccchhhh-HHHHHHHHhcChHHHHHHH
Confidence 45566666665555554333222 2233333444557777777666655433 1222223 4778889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 183 ADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 183 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
-....-.++-+..-...|.++|.+.+..+.|+.+|-+.
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 87765555534444456678899999999999987553
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.01 E-value=3.8 Score=36.46 Aligned_cols=87 Identities=16% Similarity=0.092 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
.+.+.-|.-+...|+...|.++-++. .+ ++..-|-..|.+|+..++|++.+++... +-.+.-|...+.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv--~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---KV--PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---CC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 34455567777888888888875554 33 5556899999999999999998887543 1233668889999
Q ss_pred HHhcCCHHHHHHHHHhCC
Q 021583 204 FQKLGMLDKYEKLKKKYP 221 (310)
Q Consensus 204 ~~~~g~~~~a~~l~~~~~ 221 (310)
|.+.|..++|.+...++.
T Consensus 247 ~~~~~~~~eA~~yI~k~~ 264 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIP 264 (319)
T ss_pred HHHCCCHHHHHHHHHhCC
Confidence 999999999988876633
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.8 Score=36.62 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=111.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CC--------HHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG-------------RT--------MGT 125 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~--------~~t 125 (310)
+..+.|.+-|....+.+---....||..+..| +.|+++.|++...++.++|++ || .-.
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 56667778888877763333456788777665 557899999999999988762 12 122
Q ss_pred HHHHHHH-------HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 021583 126 YFLLLNA-------LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIV 197 (310)
Q Consensus 126 y~~ll~~-------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty 197 (310)
-+.++.+ +.+.|+.+.|.+-+-.|.-+.-...+.+|...+.-.-. .+++-+..+-+.-+.+. -| -..||
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~--nPfP~ETF 313 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ--NPFPPETF 313 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc--CCCChHHH
Confidence 2334444 45678889999999888866543355565555443333 33444444444444443 33 34789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhh
Q 021583 198 SMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTK 260 (310)
Q Consensus 198 ~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~ 260 (310)
..++-.||+..-++.|-.++.+- ...||.. .+.+.|+.|-.- .....+++++-+
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn--~~lTyk~-------L~~Yly~LLdaLIt~qT~pEea~KKL 369 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAEN--AHLTYKF-------LTPYLYDLLDALITCQTAPEEAFKKL 369 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhC--cchhHHH-------hhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999998652 2233443 344555433222 344555555444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=8.1 Score=39.52 Aligned_cols=131 Identities=8% Similarity=-0.006 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH--
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGRTMGTY--FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-- 159 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~ty--~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-- 159 (310)
...+..+...+...|+++.|.+.+...... +........ ...+..+...|+.+.|.+.+......... .+.
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~ 690 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA-NNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc-cchhH
Confidence 344555666778899999999999887532 111111011 11234556689999999998776543221 111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 160 -IFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 160 -~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..+..+..++...|+.++|..++++.... |..++ ..+...+-.++.+.|+.++|...+.+
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12456777888999999999999887642 44333 25677777888999999999998875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.65 E-value=7.5 Score=37.59 Aligned_cols=146 Identities=10% Similarity=0.152 Sum_probs=91.1
Q ss_pred hHhHHHHHHhcC-CcHHHHHHHHHHHHH-cCCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 021583 55 SAKLVTCIKGLS-NVKEEVYGALDSFIA-WELE------------FPLITVKKALKTLENEKDWKRIIQVTKWMLSK--- 117 (310)
Q Consensus 55 ~~~~~~~l~~~~-~~~~~~~~~~~~m~~-~~~~------------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 117 (310)
...|+.+|+.++ ....+++..+-...+ .+++ .++..-+--|..+++.+++++|-+.+......
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f 201 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEF 201 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhh
Confidence 456888888877 122223333333222 2222 23444566688888999999998888876533
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 118 ---GQGRTMGTYFLLLNALAEDGRLDE---AEELWTKIFLDHLEGTPRI--FFDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 118 ---g~~p~~~ty~~ll~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~--~y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
..+-+-..|.-+.+..+++.+.-. ...++..+..+ -+|.. .|++|..-|.+.|++++|..+|++-.+.-
T Consensus 202 ~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v 278 (835)
T KOG2047|consen 202 VSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV 278 (835)
T ss_pred hhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 224556677777777777766543 44555555443 24443 79999999999999999999998866542
Q ss_pred CCCCHHHHHHHHHHHH
Q 021583 190 VRPNVSIVSMMGNAFQ 205 (310)
Q Consensus 190 ~~p~~~ty~~li~~~~ 205 (310)
....-|+.+.++|+
T Consensus 279 --~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 279 --MTVRDFTQIFDAYA 292 (835)
T ss_pred --eehhhHHHHHHHHH
Confidence 23344555555554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.2 Score=35.22 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=36.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 021583 135 EDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYE 214 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 214 (310)
..|++++|+.+|.-+.--+. -+..-|..|-.+|-..+++++|..+|...-.... -|...+-.+-.||...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 44555555555555444332 2222234444444445555555555554433221 12222333344555555555555
Q ss_pred HHHH
Q 021583 215 KLKK 218 (310)
Q Consensus 215 ~l~~ 218 (310)
+.|+
T Consensus 126 ~~f~ 129 (165)
T PRK15331 126 QCFE 129 (165)
T ss_pred HHHH
Confidence 5543
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=92.21 E-value=3.4 Score=32.09 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=64.2
Q ss_pred HCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHC
Q 021583 116 SKGQGRTM--GTYFLLLNALAEDGRLDEAEELWTKIFLDHLE----GTPRIFFDKMISIYYNRGM-HEKMFEIFADMEEL 188 (310)
Q Consensus 116 ~~g~~p~~--~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~y~~li~~~~~~g~-~~~a~~l~~~m~~~ 188 (310)
+.+..++. ...|++++-.+..+.....+++++.+..-... ..+..+|++++.+.++..- .-.+..+|+-|++.
T Consensus 30 ~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~ 109 (145)
T PF13762_consen 30 EENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKN 109 (145)
T ss_pred hcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHc
Confidence 33444443 33455666666666666666666555322110 1233479999999977776 55678889999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 189 GVRPNVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 189 g~~p~~~ty~~li~~~~~~g~~~~ 212 (310)
+.+++..-|..||+++.+-...|.
T Consensus 110 ~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 110 DIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCcc
Confidence 889999999999998887644444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.84 E-value=3.4 Score=31.96 Aligned_cols=87 Identities=11% Similarity=0.073 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKG--QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
...|+..... .+.|++++|.+.|+.+..+- -.-...+.--|+.+|.+.+++++|...+++..+.+=. .+.+-|-..
T Consensus 11 ~~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCCccHHHH
Confidence 3445444444 46789999999999988661 1223455666899999999999999999999998764 334678888
Q ss_pred HHHHHHcCCHH
Q 021583 166 ISIYYNRGMHE 176 (310)
Q Consensus 166 i~~~~~~g~~~ 176 (310)
+.|++.....+
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888755544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.79 E-value=2.6 Score=34.08 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccC
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV--SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRI 237 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~ 237 (310)
..|..+..-|++.|+.++|.+.|.++......+.. ..+-.+|+.....+++..+.....+...... .........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~---~~~d~~~~n 113 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE---KGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh---ccchHHHHH
Confidence 38999999999999999999999999987666654 6678889999999999999888765211000 000001122
Q ss_pred ChhhhhHhhhccCCChhhHHhhhchhh
Q 021583 238 PAKPKYELDSATEGKTNEVETTKNPNE 264 (310)
Q Consensus 238 ~~~~~~~li~~~~g~~~~a~~~~~~m~ 264 (310)
...+|..|..-..|++..|-+.|-...
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 244555555558899998888775553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.56 E-value=4.1 Score=37.65 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCCCChHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTMGTYFLLLNALAEDGRLDEAEELWTK-IFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~y~~l 165 (310)
...|...|+.-.+...++.|..+|-+.++.| +.++++.|+++|..++. |+...|-.+|+- |+..+ .+.+--+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~---d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFP---DSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCC---CchHHHHHH
Confidence 3567888888888888999999999999988 77999999999998875 677788888874 44332 222334556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADMEELGVRPN--VSIVSMMGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~l 216 (310)
+..+..-++-+.|..+|+.-... +.-+ ...|..+|+-=..-|++.-|..+
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sL 524 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSL 524 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhH
Confidence 67778889999999999844322 1112 36788888888888888666444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.50 E-value=5.1 Score=30.61 Aligned_cols=116 Identities=18% Similarity=0.088 Sum_probs=81.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.....++.+...+ ..+...+|.++..|++.. ..+..+.+.. ..+.+.....++.|-+.+.++++.-++
T Consensus 21 ~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 21 NLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELY 92 (140)
T ss_pred CcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHH
Confidence 34666788888888777 467788999999999874 4555555553 244566667899999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNR-GMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 206 (310)
.++.. |...+..+... ++++.|.+.+.. .-+...|..++..+..
T Consensus 93 ~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 93 KKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred HhhcC----------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 87632 22333333444 788888888776 2256677777776654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.28 E-value=5.3 Score=40.47 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH-
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS- 167 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~- 167 (310)
..|..|-..|+..-+..+|.+-|+...+-. .-+......+.+.|+...+++.|..+.-.--+... .-...||.+=.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~--a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP--AFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch--HHHHHhhhhhcc
Confidence 467777777777777788888887766542 34567777888999999999999988333222211 11123443333
Q ss_pred -HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 168 -IYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 168 -~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|.+.++...|..-|+.-.+ +.| |...|..|..+|.+.|+..-|.++|.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred ccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 34567777777777766554 445 678899999999999999999999965
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.17 E-value=2 Score=31.02 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHH
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWML-SKGQGRTMGTYFLLL 130 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~ty~~ll 130 (310)
.+-+..+....+.|++....+.+.+|.+.+++..|.++|+-.+ +.|-+-+ .|.-++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~l 86 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYIL 86 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHH
Confidence 4555666677778888888888888888888888888887777 4443322 454444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.93 E-value=10 Score=33.05 Aligned_cols=102 Identities=9% Similarity=-0.083 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED---GRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
+-|...|--|-..|...|+++.|..-|..-... ..+|...+..+-.++... .+..++..+|++.....- .+..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~--~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP--ANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC--ccHHH
Confidence 557888999999999999999999999886643 234445555555544433 335688999999887653 45456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
-.-|-..+...|++.+|...|+.|....
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6677778888999999999999998753
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.62 E-value=2.3 Score=30.42 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWML-SKGQGRTMGTYFLLLN 131 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~ 131 (310)
+.+.+..+....+.|++....+.+.+|.+.+++..|.++|+-.+ +.|. +...|..+++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 35667777888888999999999999999999999999998777 4433 3445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.79 Score=26.08 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 021583 126 YFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
|+.|-+.|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.18 E-value=15 Score=33.76 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=27.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 96 KTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+.+...|++..|.-.|...... -+-+...|.-|+..|...|++.+|.-+-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3445556666665555543322 1124566666666666666666655443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.79 E-value=5 Score=35.34 Aligned_cols=104 Identities=7% Similarity=-0.027 Sum_probs=61.9
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 021583 81 AWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK---GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT 157 (310)
Q Consensus 81 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 157 (310)
..|.+....+...++..-....+++.+...+-.++.. ...|+...|. .+. ++..-+++++..++..=.+-|+ -+
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~ir-lllky~pq~~i~~l~npIqYGi-F~ 133 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIR-LLLKYDPQKAIYTLVNPIQYGI-FP 133 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHH-HHHccChHHHHHHHhCcchhcc-cc
Confidence 3455556666666666666566677777666665522 2233332222 122 2223356677777777777777 36
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 158 PRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 158 ~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
|..+++.+|..|.+.+++.+|..+.-.|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 667777777777777777777776555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.40 E-value=1 Score=25.58 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777778888888877777743
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.27 E-value=18 Score=33.31 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=55.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM 174 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~ 174 (310)
.......+++..|+.+-++-.... ..+...|-.=-+.+...|+.++|.=.|+....-. |.+..+|.-|+..|...|+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhch
Confidence 344445566666666665544332 2233444333456667788999988888766542 3444689999999999999
Q ss_pred HHHHHHHHH
Q 021583 175 HEKMFEIFA 183 (310)
Q Consensus 175 ~~~a~~l~~ 183 (310)
+.+|.-+-+
T Consensus 384 ~kEA~~~An 392 (564)
T KOG1174|consen 384 FKEANALAN 392 (564)
T ss_pred HHHHHHHHH
Confidence 888765443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.90 E-value=3.5 Score=36.29 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=66.7
Q ss_pred cCchHhHHHHHHhcC--CcHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 021583 52 ISKSAKLVTCIKGLS--NVKEEVYGALDSFIAW---ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTY 126 (310)
Q Consensus 52 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty 126 (310)
.....+++.++.-.+ +.++.+...+-+++.. -..|+. +-.+.+..|.+ -++.+++.+...=.+.|+-||.+++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhH
Confidence 344444555543333 4445555555544421 112222 22233444444 3688999999998999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
+.+|+.+.+.+++.+|.++...|.....
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887776654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.22 E-value=2.5 Score=25.16 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
+..+-..|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444555555555555544443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.89 E-value=4.3 Score=35.26 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL-----DHLEGTPRIFF 162 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~y 162 (310)
..++..++..+...|+++.+.+.++.+... ..-+...|..+|.+|.+.|+...|...|+++.+ .|+. |...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~-P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID-PAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC-ccHHHH
Confidence 457888899999999999999999998876 366889999999999999999999999998876 4664 333444
Q ss_pred HHHHHH
Q 021583 163 DKMISI 168 (310)
Q Consensus 163 ~~li~~ 168 (310)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=87.80 E-value=28 Score=33.79 Aligned_cols=179 Identities=10% Similarity=-0.026 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
+.+.|..+--.+...+++++|.+.|....+.+ +-|...+.-|--.-.+.|+.+.......++.+... .....|..+.
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~--~~ra~w~~~A 150 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP--SQRASWIGFA 150 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh--hhHHHHHHHH
Confidence 45677777777777789999999999887664 44566776666666778889988888888887643 4446899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHhCCCCccchheeccCcccCCh
Q 021583 167 SIYYNRGMHEKMFEIFADMEELG-VRPNVSIVSMMGNA------FQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPA 239 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~------~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~ 239 (310)
-++--.|+...|.++.++..+.. -.|+...|.-...- ..+.|.+++|.+.+....+... +.+.-.....+.
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~--Dkla~~e~ka~l 228 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV--DKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH--HHHHHhhhHHHH
Confidence 99999999999999999998764 45676665433322 4567889999888765443311 110001111222
Q ss_pred hhhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 240 KPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 240 ~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
.. +.++.++|..++..+.... |+-.-|+..+
T Consensus 229 ~~-------kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l 259 (700)
T KOG1156|consen 229 LM-------KLGQLEEAVKVYRRLLERN--PDNLDYYEGL 259 (700)
T ss_pred HH-------HHhhHHhHHHHHHHHHhhC--chhHHHHHHH
Confidence 22 5888888988888887654 6666666665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.76 E-value=23 Score=33.13 Aligned_cols=116 Identities=18% Similarity=0.110 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HC----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWML-------SK----------GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~----------g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
..-.+.++.-+-+.|.++.|+++-.+-. +. .-..+...|..|-+...+.|+++-|++.|.+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 3346777777777777777776654322 11 224578899999999999999999999998744
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+ |..|+--|.-.|+.+...++.+.-...|- ++....++.-.|++++..+++.+
T Consensus 375 d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 375 D----------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C----------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 77788888889999888888877776664 67777778888899888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=87.74 E-value=21 Score=32.43 Aligned_cols=162 Identities=14% Similarity=0.051 Sum_probs=95.9
Q ss_pred HHHHHHhcCCc--HHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 021583 58 LVTCIKGLSNV--KEEVYGALDSFIAW---ELEFPLITVKKALKTLEN---EKDWKRIIQVTKWMLSKGQGRTMGTYFLL 129 (310)
Q Consensus 58 ~~~~l~~~~~~--~~~~~~~~~~m~~~---~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~ty~~l 129 (310)
+.+.+.++.+. .+...++.+.+... .+.-+...--...-++.+ .|+.++|.+++..+....-.++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 34444444432 23345555565543 111122222344555666 89999999999997777778888899888
Q ss_pred HHHHHhc---------CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC-HHHHHHHH---H-HHHHCCCC---C
Q 021583 130 LNALAED---------GRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM-HEKMFEIF---A-DMEELGVR---P 192 (310)
Q Consensus 130 l~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~-~~~a~~l~---~-~m~~~g~~---p 192 (310)
-..|-.. ...++|.+.|.+--+..-..-+-+.+-+|+........ -.+..++- . ...++|.. .
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 7766321 23678888888765543211222344455544332111 22333333 2 22234432 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 193 NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 193 ~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|-.-+.+++.++.-.|+.++|.+..++
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEK 330 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567788999999999999999999876
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=87.63 E-value=14 Score=30.30 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=86.3
Q ss_pred CcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh--------
Q 021583 67 NVKEEVYGALDSFIAW--ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAE-------- 135 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~-------- 135 (310)
+....|...|+++... +-+.-..+.-.+..++.+.|+++.|...|+..... .-.|. .-+...+.|.+.
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHhCccch
Confidence 4455557788887764 22233456678888999999999999999997744 33333 233333333332
Q ss_pred -----cCCHHHHHHHHHHHHhcCCCCChHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 021583 136 -----DGRLDEAEELWTKIFLDHLEGTPRIF-----------------FDKMISIYYNRGMHEKMFEIFADMEELGVRPN 193 (310)
Q Consensus 136 -----~g~~~~A~~~~~~m~~~~~~~~~~~~-----------------y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 193 (310)
.+...+|...|+++.+.-=. +... =-.+...|.+.|.+..|..-++.+.+. -|+
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~--S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~ 173 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPN--SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPD 173 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TT--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STT
T ss_pred hcccChHHHHHHHHHHHHHHHHCcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC
Confidence 12245677778777765211 1111 111445677888899898888888765 243
Q ss_pred H----HHHHHHHHHHHhcCCHHHHH
Q 021583 194 V----SIVSMMGNAFQKLGMLDKYE 214 (310)
Q Consensus 194 ~----~ty~~li~~~~~~g~~~~a~ 214 (310)
+ ...-.|+.+|-+.|..+.+.
T Consensus 174 t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 174 TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CchHHHHHHHHHHHHHHhCChHHHH
Confidence 3 45677888888888888554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.58 E-value=1.7 Score=25.07 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKI 149 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m 149 (310)
+++.|-..|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.30 E-value=22 Score=36.61 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...|..+..+=.+.|...+|.+-|-. .-|...|.-.++...+.|.+++-.+++...++..-+ + ..=+.||-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~--~id~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-P--YIDSELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-c--cchHHHHH
Confidence 34566676776667777666665522 236788999999999999999999988776665442 2 34678999
Q ss_pred HHHHcCCHHHHHHHHH
Q 021583 168 IYYNRGMHEKMFEIFA 183 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~ 183 (310)
+|++.++..+.++++.
T Consensus 1175 AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA 1190 (1666)
T ss_pred HHHHhchHHHHHHHhc
Confidence 9999999998888664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.25 E-value=25 Score=32.72 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWE-LEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTY-FLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty-~~ll~~~~~~g~~~~A~~~~ 146 (310)
.+.|-.+|-++.+.+ +.+++..+++.|..+|. |+..-|..+|+.=... -||...| +-.+.-+...++-+.|..+|
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 455678888888888 66788999999988875 6788999999873322 3566555 45788888999999999999
Q ss_pred HHHHhcCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTP--RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 147 ~~m~~~~~~~~~--~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 206 (310)
+.-.++-- .+ ...|..+|.-=..-|+...+..+-+.|.+ +.|-..+-....+-|+-
T Consensus 490 etsv~r~~--~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 490 ETSVERLE--KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHhHHHHH--HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 95554321 11 14799999999999999999999888887 34655555555555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.22 E-value=3.7 Score=40.89 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=68.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 021583 132 ALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY--NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~--~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 209 (310)
.....+++.+|.+-.+++.++. |+ ..|...+.|+. +.|+.++|..+++.....+.. |..|...+-.+|...|+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~---Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH---PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC---CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 3445678889999999888873 33 56788888775 799999999999988776555 88999999999999999
Q ss_pred HHHHHHHHHh
Q 021583 210 LDKYEKLKKK 219 (310)
Q Consensus 210 ~~~a~~l~~~ 219 (310)
.|+|..+|++
T Consensus 93 ~d~~~~~Ye~ 102 (932)
T KOG2053|consen 93 LDEAVHLYER 102 (932)
T ss_pred hhHHHHHHHH
Confidence 9999999986
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.98 E-value=34 Score=33.89 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
.|...-..+.+.++.++|..-+.+..+. .......|.-.-..+...|.+.+|.+.|..-...+ |....+-.++-..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--P~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--PDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 3555666777788888887777665544 23445666666667778899999999998877654 23335889999999
Q ss_pred HHcCCHHHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 170 YNRGMHEKMFE--IFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 170 ~~~g~~~~a~~--l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.|+..-|.. ++.++.+.+ | +...|-.+-..+-+.|+.++|-..|.-
T Consensus 729 le~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 99999888888 888888754 4 578899999999999999999988863
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.71 E-value=11 Score=37.00 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=90.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 82 WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
.|....-.+.+-.+.-+..-|+-.+|.++-.+.+ -||...|--=+.+++..+++++-+++-+.++. - +.
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-P------IG 746 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-P------IG 746 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-C------CC
Confidence 4555555677778888888999999988876644 47888888889999999999988877666543 1 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
|.-.+.+|.+.|+.++|.+.+.+... . .-...+|.+.|++.+|.++-
T Consensus 747 y~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 747 YLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred chhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHH
Confidence 88889999999999999999877332 1 15678899999999987774
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.59 E-value=2.6 Score=28.90 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=35.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHHHcCCHHHHHHH
Q 021583 130 LNALAEDGRLDEAEELWTKIFLDHLEGTPRI-FFDKMISIYYNRGMHEKMFEI 181 (310)
Q Consensus 130 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~l 181 (310)
+..| ...+-++|+..|....+.-..+.+.. +...|+.+|+..|++.+++++
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 56677788888887777665433332 777888888888888777665
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=86.46 E-value=8.1 Score=29.61 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGV 190 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~ 190 (310)
...-++.+.+.|+-|+-.++..++.+.+- ++....-.+-++|.+.|+..++-+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~--~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEE--INPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccC--CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555555555555555555544222 2223344445555555555555555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=86.17 E-value=21 Score=33.68 Aligned_cols=145 Identities=10% Similarity=-0.033 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-----HHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHH
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-----IFFDKMISIYYNR----GMHEKMFEIFADMEELGVRPNVSI 196 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~y~~li~~~~~~----g~~~~a~~l~~~m~~~g~~p~~~t 196 (310)
+..++...+-.||-+.+++.+.+-.+.+-..-+. ..|+.++..++.. ...+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3556677788899999999998766543211221 2477777777654 5678899999999874 588766
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc-cCCChhhHHhhhchhhcCCCCCchhh
Q 021583 197 VSMMG-NAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA-TEGKTNEVETTKNPNESSEEPEAAAN 274 (310)
Q Consensus 197 y~~li-~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~-~~g~~~~a~~~~~~m~~~~~~p~~~~ 274 (310)
|...- +.+...|++++|.+.|++.......+.. ......|...+-. -.++|++|.+.+..+....-. +-..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~ 341 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ------LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAF 341 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh------HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHH
Confidence 64443 3356789999999999875433333333 2344555554444 799999999999998764322 4455
Q ss_pred hhhhh
Q 021583 275 LNESL 279 (310)
Q Consensus 275 ~~~ll 279 (310)
|..+.
T Consensus 342 Y~Y~~ 346 (468)
T PF10300_consen 342 YAYLA 346 (468)
T ss_pred HHHHH
Confidence 55554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=85.92 E-value=11 Score=35.43 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=53.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 021583 129 LLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQ 205 (310)
Q Consensus 129 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~ 205 (310)
|-..+-+.|+.++|.+.|++|.+..- ..+ ....-.||.++...+...++..++..-........ ..+|+..+--+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 44444577999999999999986432 122 24788999999999999999999999754333222 367776554333
|
The molecular function of this protein is uncertain. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.91 E-value=37 Score=33.26 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=109.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+....+|++....- +-....|-.....+...|+.-.|..++....+.. ..+...+-.-++.-..+.+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 34444455555554432 2334566667778888999999999999887663 336677888888899999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+-+..+ ++...|.--++.-.-.+..++|.+++++-.+. -|+- ..|-.+-..+-..++++.|...|..
T Consensus 642 akar~~s---gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 642 AKARSIS---GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHHhccC---CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9888753 44457777777778889999999999887763 4664 6677777888889999998888753
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.34 E-value=12 Score=32.17 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLE-GTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL-GVRPN-VSIVSMMG 201 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~-~~ty~~li 201 (310)
.|+.-+..| +.|++.+|..-|....+..=. +.....+-.|-.++...|+.++|..+|..+.+. +--|- ...+--|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455544433 334466666666555554210 001123445555666666666666666555542 11122 13344444
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 021583 202 NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~ 219 (310)
.+..+.|+.|+|...|++
T Consensus 223 ~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 223 VSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 555556666666665554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.27 E-value=18 Score=31.54 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCC-CHH
Q 021583 120 GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN---RGMHEKMFEIFADMEELGVRP-NVS 195 (310)
Q Consensus 120 ~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p-~~~ 195 (310)
.-|...|-.|-..|...|+.+.|..-|.+-.+..- .+...+..+-.++.. .....++..+|+++.+. .| |..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 44789999999999999999999999999887754 343445555554443 34567889999998874 35 567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 196 IVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 196 ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
+-..|-..+...|++.+|...|+.+
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHH
Confidence 7777888899999999999888764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=84.50 E-value=14 Score=28.33 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
..-+...+..+.++|+-+.-.+++.++.+ +-+++....-.+-.+|.+-|+..++.+++.+.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 45567788888889999999999998776 4478888888999999999999999999999999987
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.92 E-value=25 Score=31.48 Aligned_cols=116 Identities=8% Similarity=-0.053 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHH--HHHHHHHHHcCCHHHH
Q 021583 101 EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFF--DKMISIYYNRGMHEKM 178 (310)
Q Consensus 101 ~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y--~~li~~~~~~g~~~~a 178 (310)
.|++.+|-..++++.+. .+.|..++.--=++|.-.|+.+.-...+++..-.--...|-.+| ..+--++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34444444444444433 33444444444455555555555555555444331101221222 2222233345555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 179 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
++.-++-.+-+ +-|...-.++...+-..|+..++.+++.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 55544433322 1233444444444445555555555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.63 E-value=3.5 Score=23.62 Aligned_cols=29 Identities=3% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLS 116 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 116 (310)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46889999999999999999999998653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.51 E-value=14 Score=28.31 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=25.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 133 LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
++..|++++|++.|.+-..-- |.....||.=..+|.-.|+.++|+.=+++-.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 344455555555555544331 1222345555555555555555555554444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.37 E-value=31 Score=30.37 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=61.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------CCH----
Q 021583 132 ALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVR-------------PNV---- 194 (310)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~-------------p~~---- 194 (310)
...+.|+.+.|++-|....+-+.- -|.+.||.-+..|. .|+.+.|.++..+..+.|++ ||.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGy-qpllAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGY-QPLLAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCC-CchhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 345778889999999887776652 55678888877665 68888999999888887754 332
Q ss_pred ----HHHHHHHHHH-------HhcCCHHHHHHHHHhCCCC
Q 021583 195 ----SIVSMMGNAF-------QKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 195 ----~ty~~li~~~-------~~~g~~~~a~~l~~~~~p~ 223 (310)
..-+.++.++ .+.|+.+-|.+-+-.|.|.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 1123344433 3567777777777666665
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.22 E-value=0.46 Score=36.63 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 021583 129 LLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208 (310)
Q Consensus 129 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 208 (310)
+|+.+.+.+.+.....+++.+...+.. .+...++.++..|++.++.++.+++++. .+..-...+++.|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 456666777788888888888866542 4456788888888888877888887772 11123355667778888
Q ss_pred CHHHHHHHHHh
Q 021583 209 MLDKYEKLKKK 219 (310)
Q Consensus 209 ~~~~a~~l~~~ 219 (310)
.++++..++.+
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 88888777655
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=83.16 E-value=42 Score=31.69 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFDKMISIY 169 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~y~~li~~~ 169 (310)
--+-.++.+.|+.++|.+.|.+|.+. ...-+.....+|+..+...+...++..++.+-.+... |... .+|+.-+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHH
Confidence 34566667889999999999999754 2223456788999999999999999999999766555 2333 4888876554
Q ss_pred HHcCC
Q 021583 170 YNRGM 174 (310)
Q Consensus 170 ~~~g~ 174 (310)
...++
T Consensus 342 Rav~d 346 (539)
T PF04184_consen 342 RAVGD 346 (539)
T ss_pred Hhhcc
Confidence 44443
|
The molecular function of this protein is uncertain. |
| >COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.84 E-value=25 Score=28.79 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHhcCC--HHHHHHHHHHHHhcCCCCChH---HHH
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSK--GQGRTMGTYFLLLN-ALAEDGR--LDEAEELWTKIFLDHLEGTPR---IFF 162 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~ty~~ll~-~~~~~g~--~~~A~~~~~~m~~~~~~~~~~---~~y 162 (310)
++..+-.....|++++|.+-++.+.+. .++--...|.-+.. +++..+. +-+|.-++.-+....+ |.+. +.+
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~-ps~~EL~V~~ 110 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL-PSPEELGVPP 110 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC-CCHHHcCCCH
Confidence 334444455667788887777776532 12223445555555 5555543 4566666766666555 2222 234
Q ss_pred HHHHHHHH--------------HcCCHHHHHHHHHHHHH
Q 021583 163 DKMISIYY--------------NRGMHEKMFEIFADMEE 187 (310)
Q Consensus 163 ~~li~~~~--------------~~g~~~~a~~l~~~m~~ 187 (310)
-..|.|.+ +.|+++.|+++++-|..
T Consensus 111 ~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 111 IAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44555544 45666666666666654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.80 E-value=13 Score=36.01 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 164 KMISIYYNRGMHEKMFEIFADMEELGVRPNV-----------SIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-----------~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
.++.-....++|++|+.+-+...+ ..||. .-|.-.=.+|-++|+-.+|.++++++..+
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 455566677888888877766543 33443 12334446788888888888888876543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.47 E-value=20 Score=27.50 Aligned_cols=91 Identities=19% Similarity=0.112 Sum_probs=68.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH---HHHHHHHHHHcC
Q 021583 97 TLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF---FDKMISIYYNRG 173 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---y~~li~~~~~~g 173 (310)
++...|+++.|++.|.+-..- ..-....||.--.++--.|+.++|++=+.+..+..- +.+... |..=-.-|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhC
Confidence 457889999999999997765 345678999999999999999999999988777654 233333 333334566788
Q ss_pred CHHHHHHHHHHHHHCC
Q 021583 174 MHEKMFEIFADMEELG 189 (310)
Q Consensus 174 ~~~~a~~l~~~m~~~g 189 (310)
+-+.|..=|+.--+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888777766655
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=81.96 E-value=23 Score=28.16 Aligned_cols=91 Identities=10% Similarity=-0.072 Sum_probs=64.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g 173 (310)
.-..+...|++++|..+|.-+.-.+. -|..-+-.|-..+-..+++++|...|...-..+.. .|.. +--.-.+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p-~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRP-VFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCc-cchHHHHHHHhC
Confidence 34455678999999999999876542 22222344455555669999999999877766552 3323 444556778899
Q ss_pred CHHHHHHHHHHHHH
Q 021583 174 MHEKMFEIFADMEE 187 (310)
Q Consensus 174 ~~~~a~~l~~~m~~ 187 (310)
+.+.|...|.....
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988776
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=81.95 E-value=8.2 Score=27.94 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhccCCCh
Q 021583 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEGKT 253 (310)
Q Consensus 174 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~ 253 (310)
.+++|..+-+-+...+.. ....--+-+.++...|++++|.++.+.. .-||...|-+|-+.+.|.-
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~--------------~~pdlepw~ALce~rlGl~ 84 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL--------------CYPDLEPWLALCEWRLGLG 84 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC--------------CCchHHHHHHHHHHhhccH
Confidence 356777776666654432 2222233345688899999998885442 2588888888888899999
Q ss_pred hhHHhhhchhhcCCCCC
Q 021583 254 NEVETTKNPNESSEEPE 270 (310)
Q Consensus 254 ~~a~~~~~~m~~~~~~p 270 (310)
+.++..+.+|..+|-|.
T Consensus 85 s~l~~rl~rla~sg~p~ 101 (115)
T TIGR02508 85 SALESRLNRLAASGDPR 101 (115)
T ss_pred HHHHHHHHHHHhCCCHH
Confidence 99999998888887653
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.81 E-value=28 Score=31.70 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..+++.|..+|.+.+++..|++.-+.....+ .+|+-..=---.+|...|+++.|+..|.++.+.. |.|-..-+.|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 4567888888888888888888888877664 3454444444667777788888888888888763 344445555555
Q ss_pred HHHHcCCH-HHHHHHHHHHHH
Q 021583 168 IYYNRGMH-EKMFEIFADMEE 187 (310)
Q Consensus 168 ~~~~~g~~-~~a~~l~~~m~~ 187 (310)
.--+.... ++..++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 55444443 334666777754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.60 E-value=56 Score=32.07 Aligned_cols=134 Identities=9% Similarity=0.033 Sum_probs=58.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 021583 82 WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT--MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR 159 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 159 (310)
.|+..+...|-.=...|-+.|..--+..+.......|+.-. ..||..--+.|.+.+.++-|..+|....+-- +...
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~ 550 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKK 550 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchh
Confidence 34444444444444444444444444444444444443321 2334444444444444444444444444322 1222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
..|......--..|..+....++.+.... ++-....|-...+.+...|++..|..++.
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 34444444444444444444444444432 11122344444444555555555555543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.57 E-value=43 Score=30.70 Aligned_cols=124 Identities=16% Similarity=0.024 Sum_probs=66.4
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 90 TVKKALKTLEN--EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALA--EDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 90 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
.|..|-.++.. .|+-..|.++-.+-.+. +.-|..-...|+.+-. -.|+.++|.+-|+.|...-- .-......|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE--tRllGLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPE--TRLLGLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChH--HHHHhHHHH
Confidence 34455555533 45666666665543322 3344444444544433 45778888888887775411 000122222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
.-.--+.|..+.|.+.-++--+ .-|. ...+...+...+..|+||.|+++++
T Consensus 161 yleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 2223456666666666555332 2343 3556667777777777777777775
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=81.50 E-value=36 Score=29.75 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHh-c-CCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHH
Q 021583 87 PLITVKKALKTLEN-E-KDWKRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFD 163 (310)
Q Consensus 87 ~~~~~~~li~~~~~-~-~~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~ 163 (310)
|......+++.... . .....-.++.+-+. ..|-.++.-+...+|+.+++.+++.+-.++|+..........|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 44444555555443 1 12222333333333 334455666666666666666666666666665554422113334566
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 021583 164 KMISIYYNRGMHEKMFEIFAD 184 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~ 184 (310)
.+|+.....|+..-..++.++
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhC
Confidence 666666666666555555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.16 E-value=32 Score=29.40 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=22.5
Q ss_pred cCCChhhHHhhhch---hhcCCCCCchhhhhhhhhhhhhhhHHHH
Q 021583 249 TEGKTNEVETTKNP---NESSEEPEAAANLNESLEETEANTKELL 290 (310)
Q Consensus 249 ~~g~~~~a~~~~~~---m~~~~~~p~~~~~~~ll~~~~~~~~~l~ 290 (310)
-..++..|+..++. .-..--..+.++...||+.-.++..+.+
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~ 246 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEI 246 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHH
Confidence 45566667766665 2222234466677777755444444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.93 E-value=62 Score=32.15 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=104.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 021583 113 WMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 192 (310)
Q Consensus 113 ~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 192 (310)
++....++-|...|..|--++..+|+++.+-+.|++.....+ .....|+.+-..|..+|.-..|..++++-....-.|
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 334445667889999999999999999999999998776544 333579999999999999999999998866544335
Q ss_pred CH-HHHHHHHHHHH-hcCCHHHHHHHHHh-----------CCCCccc-----hh-------------------------e
Q 021583 193 NV-SIVSMMGNAFQ-KLGMLDKYEKLKKK-----------YPPPKWE-----YR-------------------------Y 229 (310)
Q Consensus 193 ~~-~ty~~li~~~~-~~g~~~~a~~l~~~-----------~~p~~~~-----~~-------------------------~ 229 (310)
+. ..+-..-..|. +.|.+++++..-.+ +.|.... |. .
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 43 44433334343 34555555444322 1111110 11 1
Q ss_pred eccCcccCChhhhhHhhhccCCChhhHHhhhchhhc--CCCCCchhhhhhhh
Q 021583 230 IKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNES--SEEPEAAANLNESL 279 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll 279 (310)
+......+++..|-++-.+-.++.+.|.+...+... .|..+-..++-.++
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALv 522 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALV 522 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 112344566666666666677888888877776654 34444455544444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.64 E-value=4.4 Score=24.03 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
+|..+-..|.+.|++++|+++|+...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5777888888899999999998888874
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.47 E-value=11 Score=30.68 Aligned_cols=58 Identities=17% Similarity=0.029 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 95 LKTLENEKDWKRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
+.......+.+......++.. -....|+..+|..++.++...|+.++|.+...++..-
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333345666666666666655 3345788888888888888888888888888777754
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=80.46 E-value=35 Score=29.01 Aligned_cols=77 Identities=12% Similarity=0.056 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTY---FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty---~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
.|.. ...+.+.|++++|.+.|+.....- |+ .... -.+..+|.+.++.++|...|++..+..-. .+.+-|--.
T Consensus 35 ~Y~~-A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-~~~~~~a~Y 110 (243)
T PRK10866 35 IYAT-AQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVLY 110 (243)
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-CCchHHHHH
Confidence 4444 444466899999999999988652 33 2332 23567788999999999999999988653 333566666
Q ss_pred HHHHH
Q 021583 166 ISIYY 170 (310)
Q Consensus 166 i~~~~ 170 (310)
+.|.+
T Consensus 111 ~~g~~ 115 (243)
T PRK10866 111 MRGLT 115 (243)
T ss_pred HHHHh
Confidence 66665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.28 E-value=12 Score=35.25 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=81.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHHHcCC
Q 021583 96 KTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI-FFDKMISIYYNRGM 174 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~y~~li~~~~~~g~ 174 (310)
++.+..|+++.|..+|-+-.... .+|.+-|+.=..+|++.|++++|++=-.+-++. .|+.. .|+-.=.++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhccc
Confidence 45567899999999999877653 458899999999999999999998766655544 24443 89999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 021583 175 HEKMFEIFADMEELGVRP-NVSIVSMMGNAF 204 (310)
Q Consensus 175 ~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~ 204 (310)
+++|+.-|.+=.+. .| +...++-|..++
T Consensus 86 ~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 99999999886653 45 457777777777
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.08 E-value=20 Score=32.72 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+++.|.-+|.+.+++.+|++..+...+.+ .+|....=-=-.+|...|+++.|...|++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~k 316 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQK 316 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHH
Confidence 56777777777777777777766665532 22333333334556667777777777665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 310 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 7e-04 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 7e-04
Identities = 19/159 (11%), Positives = 51/159 (32%), Gaps = 20/159 (12%)
Query: 75 ALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALA 134
++ + F L +E + +R G ++ + L
Sbjct: 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS--SINGLEKSSDLLLCKADTLF 316
Query: 135 EDGRLDEAEELWTK---IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVR 191
R + + TK I +L+ + ++ + G K++ I D+ +
Sbjct: 317 VRSRFIDVLAITTKILEIDPYNLDV-----YPLHLASLHESGEKNKLYLISNDLVDR--H 369
Query: 192 PNVSIV-SMMGNAFQKLGMLDK----YEK---LKKKYPP 222
P ++ +G + + + + + K + ++ P
Sbjct: 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 310 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.89 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.83 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.68 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.66 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.23 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.22 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.21 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.19 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.18 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.17 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.14 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.11 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.07 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.04 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.02 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.02 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.01 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.99 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.98 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.97 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.97 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.95 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.94 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.92 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.9 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.88 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.86 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.86 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.85 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.82 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.8 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.79 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.77 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.76 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.73 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.66 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.65 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.65 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.65 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.63 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.63 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.6 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.53 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.5 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.46 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.42 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.39 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.35 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.34 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.27 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.23 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.19 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.19 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.17 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.16 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.16 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.14 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.12 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.12 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.11 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.1 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.1 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.1 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.1 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.09 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.07 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.06 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.06 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.05 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.05 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.03 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.02 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.02 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.02 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.02 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.01 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.01 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.01 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.01 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.0 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.99 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.99 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.99 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.98 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.98 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.97 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.97 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.97 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.97 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.96 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.95 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.93 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.92 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.92 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.92 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.91 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.9 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.89 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.88 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.88 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.86 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.86 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.85 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.84 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.84 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.83 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.83 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.8 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.78 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.77 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.73 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.68 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.67 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.64 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.64 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.62 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.55 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.5 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.5 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.49 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.48 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.48 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.43 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.41 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.38 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.36 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.36 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.33 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.26 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.18 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.17 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.15 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.02 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.99 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 96.98 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 96.97 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.96 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.92 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.91 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.88 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.85 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.84 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.75 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.73 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.73 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.69 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 96.68 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 96.56 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.52 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.48 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.21 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.13 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.06 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 95.97 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.74 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.71 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 95.46 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.14 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 95.12 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 95.01 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 94.96 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 94.65 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.81 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.21 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.35 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.06 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 91.59 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 91.18 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 91.04 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 90.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 90.56 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 90.27 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.26 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.09 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.02 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 88.59 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.49 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.12 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.14 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 85.43 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.44 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 84.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.35 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 83.28 | |
| 2nsz_A | 129 | Programmed cell death protein 4; PDCD4, tumor supp | 81.86 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 80.62 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=259.00 Aligned_cols=199 Identities=12% Similarity=0.080 Sum_probs=171.3
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 021583 72 VYGALDSFIAWELEFPL-ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGR---------LDE 141 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~---------~~~ 141 (310)
+..+.+++.+.+..... ..++.+|.+|++.|++++|.++|++|.+.|++||.+|||+||++|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34556677777776654 45889999999999999999999999999999999999999999998765 688
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 021583 142 AEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYP 221 (310)
Q Consensus 142 A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~ 221 (310)
|.++|++|.+.|+ .||.+|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|+
T Consensus 89 A~~lf~~M~~~G~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~--- 164 (501)
T 4g26_A 89 GFDIFKQMIVDKV-VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA--- 164 (501)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH---
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH---
Confidence 9999999999999 488899999999999999999999999999999999999999999999999999999999954
Q ss_pred CCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhhhh
Q 021583 222 PPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESLEE 281 (310)
Q Consensus 222 p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 281 (310)
.|.+.|+.||..+|++||++ +.|+.++|.+++++|...++.|+..||+.++..
T Consensus 165 -------~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 165 -------HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp -------HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred -------HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 47788999999999999999 999999999999999999999999999998843
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=251.70 Aligned_cols=189 Identities=11% Similarity=0.057 Sum_probs=168.6
Q ss_pred CCCchHHHHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHHH
Q 021583 37 PRYPRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKD---------WKRI 107 (310)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---------~~~a 107 (310)
...|.. ..+..+..+++.|++.+| .++|++|.+.|++||..|||+||.+|++.+. +++|
T Consensus 22 ~~spe~-~l~~~id~c~k~G~~~~A-----------~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 22 QQSPEA-LLKQKLDMCSKKGDVLEA-----------LRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --CHHH-HHHHHHHHTTTSCCHHHH-----------HHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred cCCCHH-HHHHHHHHHHhCCCHHHH-----------HHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 334444 345567888888888888 8999999999999999999999999998765 7889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 108 IQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 108 ~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
.++|++|.+.|+.||..||++||++|++.|++++|+++|++|.+.|+ .|+.+|||+||.+||+.|++++|.++|++|.+
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999 48889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc
Q 021583 188 LGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA 248 (310)
Q Consensus 188 ~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~ 248 (310)
.|+.||..||++||++|++.|++++|.++|++ |+..+..|+..+|+.+++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~----------Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQR----------LRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH----------HHHHTSSBCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH----------HHHhCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999999665 5556666777777666654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=201.67 Aligned_cols=136 Identities=10% Similarity=0.068 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWML---SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFD 163 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~ 163 (310)
-..|||+||.+||+.|++++|.++|++|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|+. ||.+|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~-PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-PDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CcHHHHH
Confidence 35699999999999999999999998886 4589999999999999999999999999999999999994 8999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 164 KMISIYYNRGMH-EKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 164 ~li~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
+||++||+.|+. ++|.++|++|.+.|+.||..||+++++++.+.+-++.+.++..++.|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~ 265 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCC
Confidence 999999999985 789999999999999999999999999998887777766665555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-20 Score=183.94 Aligned_cols=127 Identities=9% Similarity=0.058 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFL---DHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVS 198 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 198 (310)
-..|||+||++||++|++++|.++|++|.+ .|+ .+|.+|||+||+|||+.|++++|.++|++|.+.|+.||..|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~-~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK-LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT-TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC-CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 357999999999999999999999988764 477 4888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCH-HHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhh
Q 021583 199 MMGNAFQKLGML-DKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETT 259 (310)
Q Consensus 199 ~li~~~~~~g~~-~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~ 259 (310)
+||++|++.|+. ++|.++| ..|.+.|+.||..+|++++.+ +.+-+..+.+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll----------~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCL----------EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHH----------HHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCcHHHHHHHH----------HHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999985 7888995 458888999999999999988 55444444444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-15 Score=140.41 Aligned_cols=243 Identities=8% Similarity=-0.093 Sum_probs=174.3
Q ss_pred cccchhhhhccCCCCCCchHHHHHHHhcCcCchHhHHHHHHhcC-----------------------CcHHHHHHHHHHH
Q 021583 23 NARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLS-----------------------NVKEEVYGALDSF 79 (310)
Q Consensus 23 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~m 79 (310)
.+..+.++...-.. .++...+......+.+.+++.+++..+. +..+++..+++++
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 288 LRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444443332 2456666666666666666666653332 3445566777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 021583 80 IAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR 159 (310)
Q Consensus 80 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 159 (310)
.+.. +.+..+|+.+...|.+.|++++|.++|+.+.+.. ..+..+|+.++.+|.+.|++++|.++|+++.+.+- .+.
T Consensus 366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 441 (597)
T 2xpi_A 366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ--GTH 441 (597)
T ss_dssp HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT--TCS
T ss_pred HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cch
Confidence 6443 4567888888889999999999999998887642 34578888999999999999999999998887643 455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCC-
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIP- 238 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~- 238 (310)
.+|+.+..+|.+.|++++|.++|+.|.+.. +.+..+|+.+..+|.+.|++++|.++|+++.. .....+..++
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~p~~ 514 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALL------LVKKTQSNEKP 514 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HHHHSCCCSGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH------hhhccccchhh
Confidence 688889999999999999999999888653 23678899999999999999999988876310 0011133455
Q ss_pred -hhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 239 -AKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 239 -~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
..+|..+... ..|++++|.+.++.+...+ +.+...+..+.
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 6788888888 9999999999999887654 33555555555
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-14 Score=138.27 Aligned_cols=196 Identities=10% Similarity=0.031 Sum_probs=132.6
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
..++|..+++++.+.+ +.+..+++.++.+|.+.|++++|.++|+.+.+. ...+..+|+.+..+|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3445555566555444 224555666666666666666666666666533 23457777777788888888888888888
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccch
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEY 227 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~ 227 (310)
++.+..- .+..+|+.++.+|++.|++++|.++|++|.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 398 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 468 (597)
T 2xpi_A 398 KSSTMDP--QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY------ 468 (597)
T ss_dssp HHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH------
T ss_pred HHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Confidence 7776532 344578888888888888888888888777643 2366777788888888888888888776531
Q ss_pred heeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC----CCCCc--hhhhhhhh
Q 021583 228 RYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS----EEPEA--AANLNESL 279 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll 279 (310)
.. .+.+..+|+.+... +.|++++|.+.++.+... +..|+ ..+++.+.
T Consensus 469 ----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 469 ----AL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp ----HH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred ----Hh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 00 12356677777777 899999999999888765 66676 55666666
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-08 Score=91.61 Aligned_cols=183 Identities=14% Similarity=0.108 Sum_probs=133.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..++|...++++.+.. +-+..+|+.+...|.+.|++++|.+.|+.+.+.. +-+...|..+-..+...|++++|...|
T Consensus 149 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55666777787777654 3357788888888888899999998888887653 334677777888888888888888888
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCcc
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKW 225 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~ 225 (310)
++..+.. |.+..+|+.+...|.+.|++++|.+.|+.+.+.. | +..+|..+..+|.+.|++++|...|++...
T Consensus 227 ~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--- 299 (388)
T 1w3b_A 227 LRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--- 299 (388)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH---
T ss_pred HHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 8777654 2445678888888888888888888888887743 4 467788888888888888888888765210
Q ss_pred chheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 226 EYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
. .+.+...+..+... ..|++++|.+.++.+...
T Consensus 300 -------~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 300 -------L-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp -------H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred -------h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 0 02234455555555 788888888888777653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-09 Score=95.62 Aligned_cols=184 Identities=12% Similarity=0.023 Sum_probs=152.4
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.+...++++.+.+ +-+...|..+-..+...|++++|...|+...+.. +-+..++..+...|.+.|++++|.+.|
T Consensus 183 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45566788888887765 4457889999999999999999999999987652 335789999999999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccc
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWE 226 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~ 226 (310)
+++.+..- .+..+|..+...|.+.|++++|.+.++.+.+.. +.+..+|..+...+.+.|++++|...+++....
T Consensus 261 ~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 334 (388)
T 1w3b_A 261 RRAIELQP--HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--- 334 (388)
T ss_dssp HHHHHTCS--SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS---
T ss_pred HHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 99998753 445689999999999999999999999998753 457899999999999999999999998874211
Q ss_pred hheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 227 YRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
.+.+...+..+... ..|++++|.+.++.+...
T Consensus 335 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 335 --------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp --------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred --------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12245566667666 899999999999988753
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-09 Score=88.99 Aligned_cols=184 Identities=12% Similarity=-0.027 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
.+.|...+++..+.. +.+...+..+...|.+.|++++|.+.|+...+.. ..+...+..+...|...|++++|.++|++
T Consensus 53 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 130 (252)
T 2ho1_A 53 TEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLE 130 (252)
T ss_dssp TGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333466777766654 4467889999999999999999999999988663 34678899999999999999999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchh
Q 021583 149 IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYR 228 (310)
Q Consensus 149 m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~ 228 (310)
+.+.+..+.+...|..+...|...|++++|.+.++...+.. +.+...+..+...|...|++++|..++++....
T Consensus 131 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 204 (252)
T 2ho1_A 131 ASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG----- 204 (252)
T ss_dssp HTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----
T ss_pred HHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 98833333445689999999999999999999999988754 235788999999999999999999998763210
Q ss_pred eeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 229 YIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
...+...+..+... ..|+.++|.+.++.+...
T Consensus 205 ------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 205 ------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp ------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 01233344444444 889999999999887653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-09 Score=98.41 Aligned_cols=199 Identities=12% Similarity=0.042 Sum_probs=156.0
Q ss_pred hHHHHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 021583 41 RVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG 120 (310)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 120 (310)
++..+......+.+.+++.++ ...++++.+.. +.+..+|..+..+|.+.|++++|.+.|+.+.+.+ +
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A-----------~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 91 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADA-----------LSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-M 91 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH-----------HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHCCCHHHH-----------HHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 344444454555556666666 77777777654 4578899999999999999999999999998764 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH---HHHHHHHHH------------HHHcCCHHHHHHHHHHH
Q 021583 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR---IFFDKMISI------------YYNRGMHEKMFEIFADM 185 (310)
Q Consensus 121 p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~y~~li~~------------~~~~g~~~~a~~l~~~m 185 (310)
.+..++..+...|.+.|++++|.+.|+++.+..- .+. ..|..+... |.+.|++++|.++++.+
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP--SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4688999999999999999999999999998653 444 566666444 89999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchh
Q 021583 186 EELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPN 263 (310)
Q Consensus 186 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m 263 (310)
.+.. +.+...+..+..+|.+.|++++|..+|++.... .+.+...+..+... ..|++++|.+.++.+
T Consensus 170 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 170 LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-----------KNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-----------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8753 236789999999999999999999998763200 02345666666666 899999999999988
Q ss_pred hcC
Q 021583 264 ESS 266 (310)
Q Consensus 264 ~~~ 266 (310)
...
T Consensus 238 ~~~ 240 (450)
T 2y4t_A 238 LKL 240 (450)
T ss_dssp HHH
T ss_pred HHh
Confidence 743
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-09 Score=91.86 Aligned_cols=176 Identities=12% Similarity=0.124 Sum_probs=134.2
Q ss_pred CcHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEF-PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+.+...++++...+..| +...+..+-..|.+.|++++|.+.++. ..+...+..+...|.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455688888988877656 456677777899999999999999987 46788999999999999999999999
Q ss_pred HHHHHhcCCCCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 021583 146 WTKIFLDHLEGTPRI--FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY--- 220 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~--~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~--- 220 (310)
|+++.+..- .+.. ....++..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|+..|++.
T Consensus 153 l~~~~~~~p--~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQDE--DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCc--CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998752 2211 1122334444568999999999999876 3457899999999999999999999998872
Q ss_pred CCCccchheeccCcccCChhhhhHhhhc--cCCChhh-HHhhhchhhc
Q 021583 221 PPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNE-VETTKNPNES 265 (310)
Q Consensus 221 ~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~-a~~~~~~m~~ 265 (310)
.|+ +..++..+... ..|+..+ +.++++....
T Consensus 230 ~p~--------------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 DSG--------------HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CTT--------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCC--------------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 322 34445555544 6777765 6778776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.1e-09 Score=84.04 Aligned_cols=184 Identities=10% Similarity=-0.062 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED-GRLDEAEELWT 147 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~-g~~~~A~~~~~ 147 (310)
.+.+...+++..+.. +.+...+..+...|...|++++|.+.|+...+.. ..+..++..+...|... |++++|.+.|+
T Consensus 24 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 101 (225)
T 2vq2_A 24 YRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFD 101 (225)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 333467777766654 3457788899999999999999999999988653 34678899999999999 99999999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccch
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEY 227 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~ 227 (310)
++.+.+..+.+...|..+...|...|++++|.+.++.+.+.. +-+...+..+..+|...|++++|...+++...
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----- 175 (225)
T 2vq2_A 102 KALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQS----- 175 (225)
T ss_dssp HHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----
T ss_pred HHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Confidence 998833322334689999999999999999999999988753 22578899999999999999999999876210
Q ss_pred heeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 228 RYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
.....+...+..+... ..|+.+.+..+++.+..
T Consensus 176 -----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 176 -----RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp -----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 0000223334333333 78889999888887754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6.7e-09 Score=94.47 Aligned_cols=194 Identities=9% Similarity=0.004 Sum_probs=150.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...++++.+.. +.+...+..+...|.+.|++++|.++|+.+.+.. ..+..++..+...|...|++++|.+.|
T Consensus 157 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44556677888877654 4578889999999999999999999999988652 456899999999999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCC
Q 021583 147 TKIFLDHLEGTPRIFFDKM------------ISIYYNRGMHEKMFEIFADMEELGVRPN-----VSIVSMMGNAFQKLGM 209 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~l------------i~~~~~~g~~~~a~~l~~~m~~~g~~p~-----~~ty~~li~~~~~~g~ 209 (310)
+++.+..- .+...+..+ ...|.+.|++++|.++|+.+.+. .|+ ...|..+..++.+.|+
T Consensus 235 ~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 235 RECLKLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCC
Confidence 99987643 333455555 88999999999999999999874 455 4578899999999999
Q ss_pred HHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 210 LDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 210 ~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+++|...+++.... .+.+...+..+... ..|++++|.+.++..... .|+.......+
T Consensus 311 ~~~A~~~~~~a~~~-----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 369 (450)
T 2y4t_A 311 PVEAIRVCSEVLQM-----------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 99999998763100 02234566666666 899999999999888763 35544433333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.9e-09 Score=85.34 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------C
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED-----------G 137 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~-----------g 137 (310)
.++|...+++..+.. +-+...+..+-..+.+.|++++|...|+...+.. +-+...+..+-..|.+. |
T Consensus 21 ~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g 98 (217)
T 2pl2_A 21 YDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKG 98 (217)
T ss_dssp HHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 344477777777655 4568889999999999999999999999988663 34578889999999999 9
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 138 RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
++++|.+.|++..+.. |.+...|..+-..|...|++++|++.|++..+.. .+...+..+..+|...|++++|...|
T Consensus 99 ~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 99 YLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999874 3455689999999999999999999999999877 78899999999999999999999998
Q ss_pred HhC---CCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchh
Q 021583 218 KKY---PPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPN 263 (310)
Q Consensus 218 ~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m 263 (310)
++. .|+ +...+..+... ..|+.++|.+.++..
T Consensus 175 ~~al~~~P~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 175 AKALEQAPK--------------DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHSTT--------------CHHHHHHHHHHHTC--------------
T ss_pred HHHHHhCCC--------------ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 762 222 33444444444 889999998877654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-08 Score=84.79 Aligned_cols=196 Identities=12% Similarity=0.065 Sum_probs=142.2
Q ss_pred HHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 44 KARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM 123 (310)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 123 (310)
.+......+...+++..+ ...+++..+.. +.+...+..+...|.+.|++++|.+.|+...+.. ..+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A-----------~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 91 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKA-----------AEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAA 91 (243)
T ss_dssp -----------------C-----------CTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHhhCHHHH-----------HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccch
Confidence 444444455666666666 55555665543 4468889999999999999999999999988663 3478
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
.++..+...|...|++++|.++|++..+..- .+...|..+...|.+.|++++|.+.++...+.. +.+...+..+...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 8899999999999999999999999988754 445689999999999999999999999988653 2367889999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 204 FQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 204 ~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
|...|++++|...|++.... ...+...+..+... ..|+.++|.+.++.....
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQ-----------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999998763100 01233455555555 889999999999877653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-09 Score=90.58 Aligned_cols=188 Identities=12% Similarity=0.096 Sum_probs=136.6
Q ss_pred hhhhccCCCCCCchHHHHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 28 VVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRI 107 (310)
Q Consensus 28 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 107 (310)
....+.+..+.......+..+...+...+++.+++..+. ++..+.........+....++..+...|...|++++|
T Consensus 13 ~~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 88 (311)
T 3nf1_A 13 NLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCK----QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDA 88 (311)
T ss_dssp GGSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHH
Confidence 445555555555566666666666777888888844433 1111111111112233456788999999999999999
Q ss_pred HHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCh-HHHHHHHHHHHHHcCC
Q 021583 108 IQVTKWMLSK------GQ-GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDH-----LEGTP-RIFFDKMISIYYNRGM 174 (310)
Q Consensus 108 ~~~~~~m~~~------g~-~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~-~~~y~~li~~~~~~g~ 174 (310)
.+.|+..... +- .....++..+...|...|++++|.+.|++..+.. ...+. ...|..+...|...|+
T Consensus 89 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 168 (311)
T 3nf1_A 89 ANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168 (311)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Confidence 9999997754 22 2346788899999999999999999999988762 21122 2479999999999999
Q ss_pred HHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 175 HEKMFEIFADMEEL------GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 175 ~~~a~~l~~~m~~~------g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+++|.+++++..+. +-.|+ ..++..+..+|...|++++|...+++
T Consensus 169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998764 22343 46889999999999999999999876
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-08 Score=83.52 Aligned_cols=185 Identities=10% Similarity=0.026 Sum_probs=138.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHHHHhcCCHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG--QGRT----MGTYFLLLNALAEDGRLD 140 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~ty~~ll~~~~~~g~~~ 140 (310)
+..+.|...+++..+.. .+...+..+...|...|++++|.+.|+...+.. ..++ ..+|..+...|...|+++
T Consensus 19 ~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (258)
T 3uq3_A 19 RQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96 (258)
T ss_dssp TCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHH
Confidence 33444577888877777 778889999999999999999999999877542 2223 588889999999999999
Q ss_pred HHHHHHHHHHhcC------------------------CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 021583 141 EAEELWTKIFLDH------------------------LEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSI 196 (310)
Q Consensus 141 ~A~~~~~~m~~~~------------------------~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 196 (310)
+|.+.|++..+.. ..+.+...|..+...|...|++++|.+.++...+.. +.+..+
T Consensus 97 ~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 175 (258)
T 3uq3_A 97 KTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARG 175 (258)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHH
Confidence 9999999988743 212233478888888999999999999999887653 235788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 197 VSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 197 y~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
|..+..+|...|++++|...|++.... .+.+...+..+... ..|++++|.+.++....
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEK-----------DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh-----------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888999999999999999988763100 01123444444444 78889988888876543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=98.78 Aligned_cols=210 Identities=10% Similarity=0.006 Sum_probs=96.2
Q ss_pred HHhcCcCchHhHHHHHHhcC------------------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 021583 47 KRIGTISKSAKLVTCIKGLS------------------NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRII 108 (310)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 108 (310)
.+...+.+.+.+.+|+.++. +..+.+...++..++ . .++..+.+.++.+|.+.|+++++.
T Consensus 37 ~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~-~~~~~i~~~Li~~Y~Klg~l~e~e 114 (449)
T 1b89_A 37 QLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARK-K-ARESYVETELIFALAKTNRLAELE 114 (449)
T ss_dssp --------------------------------------------------------------------------CHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-h-CccchhHHHHHHHHHHhCCHHHHH
Confidence 55555666666666665544 223334443333333 2 344677788888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 109 QVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 109 ~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
++++ .|+..+|..+.+.|...|++++|..+|..+ ..|..|..++++.|++++|.+.+..+
T Consensus 115 ~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA--- 174 (449)
T 1b89_A 115 EFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--- 174 (449)
T ss_dssp TTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH---
T ss_pred HHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc---
Confidence 7774 377778888888888888888888888865 25889999999999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 189 GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 189 g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
-++.+|..++.+|...|+++.|...... +.....-...++.. +.|.+++|..+++.-+..
T Consensus 175 ---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~---------------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 175 ---NSTRTWKEVCFACVDGKEFRLAQMCGLH---------------IVVHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHTTTT---------------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred ---CCchhHHHHHHHHHHcCcHHHHHHHHHH---------------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 3788899999999999999998655322 11222223345555 899999999998877655
Q ss_pred CCCCchhhhhhhh-hhhhhhhHHHHHHhhhcc
Q 021583 267 EEPEAAANLNESL-EETEANTKELLEEADAIS 297 (310)
Q Consensus 267 ~~~p~~~~~~~ll-~~~~~~~~~l~~~a~~~~ 297 (310)
+ +-....|..+- -...=....+.+......
T Consensus 237 e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 237 E-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5 33444454443 122224444555555444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-08 Score=89.40 Aligned_cols=185 Identities=8% Similarity=-0.032 Sum_probs=133.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...+++..+.. +.+..+|..+...|.+.|++++|.+.|+...+.. +.+..+|..+...|...|++++|.+.|
T Consensus 79 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 156 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEAL 156 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHH
Confidence 33444577888877765 4568899999999999999999999999988763 446889999999999999999999999
Q ss_pred HHHHhcCCCCChH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 147 TKIFLDHLEGTPR----------IFFDKMISIYYNRGMHEKMFEIFADMEELGVR-PNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 147 ~~m~~~~~~~~~~----------~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
+++.+..- .+. ..+..+...|...|++++|.++++++.+..-. ++..+|..+...|...|++++|..
T Consensus 157 ~~al~~~p--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 234 (365)
T 4eqf_A 157 KNWIKQNP--KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234 (365)
T ss_dssp HHHHHHCH--HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhCc--cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99987532 111 12344577888899999999999998875321 257888899999999999999999
Q ss_pred HHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 216 LKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 216 l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
.|++.... .+.+...+..+... ..|++++|.+.++.....
T Consensus 235 ~~~~al~~-----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 235 AFNAALTV-----------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88762100 01234556666666 888999999888877553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-07 Score=77.85 Aligned_cols=150 Identities=9% Similarity=-0.084 Sum_probs=127.7
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 021583 66 SNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEE 144 (310)
Q Consensus 66 ~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~ 144 (310)
.+..++|...+++..+.. +.+...+..+...|.+.|++++|.++|+.....+..| +...+..+...|.+.|++++|.+
T Consensus 84 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 366777888888887765 3467889999999999999999999999988744455 46788889999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|++..+..- .+...|..+...|...|++++|.+.++...+.. +.+...+..+...|...|+.++|.+++++
T Consensus 163 ~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 163 YFEKSLRLNR--NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999988753 445689999999999999999999999987643 34678889999999999999999999876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-08 Score=76.40 Aligned_cols=143 Identities=11% Similarity=0.003 Sum_probs=120.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
+...+++..+.. +.+...+..+...+...|++++|.+.++...+.. ..+...+..+...|...|++++|.+.|++..+
T Consensus 27 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 104 (186)
T 3as5_A 27 AVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104 (186)
T ss_dssp HHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 355555554433 3467889999999999999999999999988663 45678899999999999999999999999988
Q ss_pred cCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 152 DHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 152 ~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..- .+...|..+...|...|++++|.+.++...+.. +.+...+..+...|...|++++|.+.+++
T Consensus 105 ~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 105 ANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 753 445689999999999999999999999988754 33578999999999999999999999876
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-08 Score=72.04 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
.|..+...+...|++++|..+|+.+.+.. ..+...+..+...+...|++++|.++|+++.+.+- .+...|..+...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--CchHHHHHHHHHH
Confidence 56778889999999999999999988663 34678888899999999999999999999988753 4456788999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 170 YNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
...|++++|.++++++.+.. +.+...+..+...|...|++++|.+.+++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 99999999999999988753 23578888999999999999999999876
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=89.57 Aligned_cols=183 Identities=10% Similarity=0.081 Sum_probs=137.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcC
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG---------RTMGTYFLLLNALAEDG 137 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---------p~~~ty~~ll~~~~~~g 137 (310)
+..+.|...+++..+.. +.+..++..+...|.+.|++++|.+.|+.+.+..-. .....+..+...|.+.|
T Consensus 113 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (365)
T 4eqf_A 113 ENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCH
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh
Confidence 55667788888887765 446889999999999999999999999998764210 11334456688999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 138 RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
++++|.++|+++.+..-...+..+|..+...|...|++++|.+.+++..+.. +.+..+|..+..+|...|++++|...|
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999885421255689999999999999999999999988753 235789999999999999999999998
Q ss_pred HhC---CCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 218 KKY---PPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 218 ~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
++. .|+ +...+..+... ..|++++|.+.++....
T Consensus 271 ~~al~~~p~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 271 TRALEIQPG--------------FIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHCTT--------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCC--------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 762 222 24555556555 88999999999977654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.97 E-value=8.1e-08 Score=84.76 Aligned_cols=188 Identities=12% Similarity=0.039 Sum_probs=128.4
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ--------------------------- 119 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--------------------------- 119 (310)
+..+.|...+++..+.+ +.+..++..+...|...|++++|.+.|+.+....-
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 44556677777766654 44677788888888888888888888777654321
Q ss_pred --------------------CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHH
Q 021583 120 --------------------GR---TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHE 176 (310)
Q Consensus 120 --------------------~p---~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~ 176 (310)
.| +..++..+...|.+.|++++|.+.|++..+..- .+..+|..+...|.+.|+++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP--NDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHcCCHH
Confidence 12 467778888888888888888888888877642 34457888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccchheeccCcccCChhhhhHhhhc--cCC
Q 021583 177 KMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWEYRYIKGKRVRIPAKPKYELDSA--TEG 251 (310)
Q Consensus 177 ~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g 251 (310)
+|.+.++...+.. +.+...|..+..+|.+.|++++|...|++. .|+.... ...........|..+..+ ..|
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP---RGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc---cccccchhhHHHHHHHHHHHHhC
Confidence 8888888877642 234677888888888888888888887652 1111000 000012235566666666 788
Q ss_pred ChhhHHhhhc
Q 021583 252 KTNEVETTKN 261 (310)
Q Consensus 252 ~~~~a~~~~~ 261 (310)
+.++|.....
T Consensus 345 ~~~~A~~~~~ 354 (368)
T 1fch_A 345 QSDAYGAADA 354 (368)
T ss_dssp CGGGHHHHHT
T ss_pred ChHhHHHhHH
Confidence 8888887765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-07 Score=74.43 Aligned_cols=160 Identities=15% Similarity=0.060 Sum_probs=131.2
Q ss_pred HHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 44 KARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM 123 (310)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 123 (310)
.+..+...+...|++.+| ...+++..+.+ +-+..++..+...|.+.|++++|.+.+....... .-+.
T Consensus 7 iy~~lG~~~~~~g~~~~A-----------~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 73 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGA-----------IRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSA 73 (184)
T ss_dssp HHHHHHHHHHHHTCHHHH-----------HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHHHHHHHHcCCHHHH-----------HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhH
Confidence 444555556666777777 66666766654 3467889999999999999999999999987663 3457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
..+..+...+...+++++|.+.+.+..+..- .+...+..+-..|.+.|++++|++.|+...+.. +-+...|..+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHH
Confidence 7888888899999999999999999888753 455689999999999999999999999988753 2257889999999
Q ss_pred HHhcCCHHHHHHHHHh
Q 021583 204 FQKLGMLDKYEKLKKK 219 (310)
Q Consensus 204 ~~~~g~~~~a~~l~~~ 219 (310)
|.+.|++++|.+.|++
T Consensus 151 ~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 9999999999999986
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=87.98 Aligned_cols=188 Identities=10% Similarity=0.021 Sum_probs=137.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+.|...++. .-+|+..++..+...+...++.++|.+.++.+...+..|+ ...+..+-..|...|++++|++.
T Consensus 48 g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~ 123 (291)
T 3mkr_A 48 RKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123 (291)
T ss_dssp TCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 444554443322 2356778899999999999999999999999998876664 55666667899999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHhCCC
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIV---SMMGNAFQKLGMLDKYEKLKKKYPP 222 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty---~~li~~~~~~g~~~~a~~l~~~~~p 222 (310)
+++ +.+...+..+...|.+.|++++|.+.++.+.+.. |+...+ ..++..+...|++++|..+|+++.
T Consensus 124 l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l- 193 (291)
T 3mkr_A 124 LHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA- 193 (291)
T ss_dssp HTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH-
T ss_pred HhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHH-
Confidence 987 2444689999999999999999999999998764 664321 223344455699999999987631
Q ss_pred CccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 223 PKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
.. .+.+...++.+..+ ..|++++|++.+++..... |-+..++..+.
T Consensus 194 ---------~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~ 241 (291)
T 3mkr_A 194 ---------DK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLV 241 (291)
T ss_dssp ---------HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ---------Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 11 13466777777666 9999999999998876543 22333444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.2e-08 Score=82.75 Aligned_cols=184 Identities=9% Similarity=-0.039 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
..+.+...+++..+.. +.+...|..+...|...|++++|.+.|+...+.. ..+...+..+...|...|++++|.+.|+
T Consensus 106 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 106 KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555566666655543 2345566666677777777777777777666542 2234555556667777777777777777
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELG--------VRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g--------~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+..+..- .+...|..+...|...|++++|.+.++...+.. ...+..+|..+..+|...|++++|...|++
T Consensus 184 ~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 184 QALSIAP--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCC--CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7666532 334567777777777777777777777665421 122345667777777777777777777655
Q ss_pred CCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 220 YPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 220 ~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
... . .+.+...+..+... ..|++++|.+.++.....
T Consensus 262 a~~----------~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 262 ALV----------L-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHH----------H-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHh----------h-CccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 210 0 01133444445444 788888888888776543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-07 Score=81.32 Aligned_cols=185 Identities=8% Similarity=-0.021 Sum_probs=138.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...+++..+.. +.+..++..+...|.+.|++++|.+.|+...+.. +.+..++..+...|...|++++|.+.|
T Consensus 78 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp TCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45556688888888765 4578899999999999999999999999988764 457889999999999999999999999
Q ss_pred HHHHhcCCC-----------------------------------------------CC--hHHHHHHHHHHHHHcCCHHH
Q 021583 147 TKIFLDHLE-----------------------------------------------GT--PRIFFDKMISIYYNRGMHEK 177 (310)
Q Consensus 147 ~~m~~~~~~-----------------------------------------------~~--~~~~y~~li~~~~~~g~~~~ 177 (310)
+++.+..-. +. +..+|..+...|.+.|++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp HHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 987765321 01 23467777788888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhh
Q 021583 178 MFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNE 255 (310)
Q Consensus 178 a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~ 255 (310)
|.+.++...+.. +.+..+|..+..+|...|++++|...|++.... .+.+...+..+... ..|++++
T Consensus 236 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 236 AVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-----------QPGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCcHHHHHHHHHHHHHCCCHHH
Confidence 888888876642 224677888888888888888888887652100 01234455555555 8899999
Q ss_pred HHhhhchhhc
Q 021583 256 VETTKNPNES 265 (310)
Q Consensus 256 a~~~~~~m~~ 265 (310)
|.+.++....
T Consensus 304 A~~~~~~al~ 313 (368)
T 1fch_A 304 AVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.8e-07 Score=78.85 Aligned_cols=193 Identities=8% Similarity=-0.128 Sum_probs=144.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEK-DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+.+...++++.+.. +-+...+..+...+...| ++++|.+.|+...+.. +.+...|..+...|...|++++|.+.
T Consensus 70 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 70 NKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp TCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 44566677777777654 345678888889999999 9999999999988653 34567888999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCcc
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKW 225 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~ 225 (310)
|++..+..- .+...+..+...|...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++......
T Consensus 148 ~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 148 YFTAAQLMK--GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHHTT--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 999888753 333567779999999999999999999988653 23578899999999999999999999876210000
Q ss_pred chheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 226 EYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
... ...........+..+... ..|++++|.+.++.....
T Consensus 225 ~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 225 AIG--NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp TTS--CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcc--ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 000 001112334566666655 899999999999877653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-07 Score=77.24 Aligned_cols=149 Identities=13% Similarity=0.032 Sum_probs=127.3
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 66 SNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 66 ~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
.+..+.+...+++..+.. +.+...+..+...|.+.|++++|.+.|+...+.. ..+...+..+...|.+.|++++|.+.
T Consensus 70 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 70 VNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 355666688888877664 4467889999999999999999999999988763 45678899999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+++..+..- .+...|..+...|.+.|++++|.+.++...+.. +.+..+|..+..+|...|++++|.+.+++
T Consensus 148 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 148 LQRAVELNE--NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHhCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999988753 445689999999999999999999999988753 23578899999999999999999999876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-07 Score=73.25 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
+...|..+-..|.+.|++++|.+.|++..+.. +-+..++..+...|.+.|++++|.+.+.+.....- .+...+..+-
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 46789999999999999999999999988663 34678899999999999999999999999988764 4456788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccchheeccCcccCChhhhh
Q 021583 167 SIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWEYRYIKGKRVRIPAKPKY 243 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~~~~~~~~~~~~~~ 243 (310)
..+...++++.+.+.+....... +-+...+..+..+|.+.|++++|.+.|++. .| .+...+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p--------------~~~~~~~ 145 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP--------------GFIRAYQ 145 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------TCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc--------------hhhhHHH
Confidence 89999999999999999987643 225788999999999999999999998762 22 2344555
Q ss_pred Hhhhc--cCCChhhHHhhhchhhcC
Q 021583 244 ELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 244 ~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
.+-.. ..|++++|.+.++.....
T Consensus 146 ~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 55555 899999999999876553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-07 Score=74.39 Aligned_cols=150 Identities=9% Similarity=-0.075 Sum_probs=125.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENE-KDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEE 144 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~ 144 (310)
+..+.+...+++..+.. +.+..++..+...|... |++++|.+.|+.+.+.+..|+ ...+..+...+...|++++|.+
T Consensus 56 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 56 KVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 45556678888877654 44678899999999999 999999999999988444444 6788899999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|++..+..- .+...|..+...|.+.|++++|.+.++...+..-..+...+..+...+...|+.+.|..+++.
T Consensus 135 ~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 135 YLKRSLAAQP--QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999988753 445689999999999999999999999988753224677788888889999999999988765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.4e-07 Score=79.95 Aligned_cols=144 Identities=10% Similarity=-0.034 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
+...+++..+.. +.+...+..+...|.+.|++++|.+.++...+.. ..+..++..+...|...|++++|.+.|++..+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367777776655 3478899999999999999999999999988663 44678999999999999999999999999988
Q ss_pred cCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 152 DHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-----------NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 152 ~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-----------~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..- .+..+|..+...|.+.|++++|.+.++...+..-.. +...|..+..+|.+.|+.++|..++++
T Consensus 235 ~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 235 INP--GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 753 445689999999999999999999999987643221 368899999999999999999999765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.4e-07 Score=75.02 Aligned_cols=142 Identities=11% Similarity=-0.066 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 021583 73 YGALDSFIAWELE---FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKI 149 (310)
Q Consensus 73 ~~~~~~m~~~~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m 149 (310)
...++++.+.... .+..++..+...|...|++++|.+.|+...+.. +.+..+|..+...|...|++++|.+.|++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 103 (275)
T 1xnf_A 25 LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103 (275)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6667777665321 135678888899999999999999999988663 346788999999999999999999999998
Q ss_pred HhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 150 FLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 150 ~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+..- .+..+|..+...|.+.|++++|.+.++.+.+. .|+...+..++..+...|++++|...+++
T Consensus 104 l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 104 LELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HhcCc--cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88643 34468899999999999999999999998874 45555555566666777899999888854
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.6e-07 Score=79.09 Aligned_cols=184 Identities=10% Similarity=0.019 Sum_probs=141.9
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
..+.|...+++..+.. +.+..++..+...+...|++++|...|+...+.. +-+...+..+...|...|++++|.+.|+
T Consensus 18 ~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 18 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 3444477777777654 4467899999999999999999999999988663 3367899999999999999999999999
Q ss_pred HHHhcCCCC-ChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 021583 148 KIFLDHLEG-TPRIFFDKM------------ISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYE 214 (310)
Q Consensus 148 ~m~~~~~~~-~~~~~y~~l------------i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 214 (310)
+..+..-.. .+...+..+ ...+...|++++|.++++.+.+.. +.+...+..+..+|...|++++|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 96 KVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 998763200 233355555 578899999999999999998753 236788999999999999999999
Q ss_pred HHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 215 KLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 215 ~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
..+++.... .+.+...+..+... ..|++++|.+.++....
T Consensus 175 ~~~~~~~~~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 175 SDLKAASKL-----------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHTT-----------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 998763211 02233455555555 88999999999987764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-07 Score=75.00 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...+..+...+...|++++|.+.|+.+.+. ...+..++..+...+...|++++|.+.+++..+..- .+...|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Confidence 356778888899999999999999987754 235688899999999999999999999999988743 45568999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhh
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDS 247 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~ 247 (310)
.|...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++.... .+.+...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~la~ 152 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-----------RPNEGKVHRAIAF 152 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----------CccchHHHHHHHH
Confidence 9999999999999999988753 346788999999999999999999998763100 0122345555555
Q ss_pred c--cCCChhhHHhhhchhhc
Q 021583 248 A--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 248 ~--~~g~~~~a~~~~~~m~~ 265 (310)
. ..|++++|.+.++....
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 153 SYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 5 88999999999877643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.7e-07 Score=78.75 Aligned_cols=191 Identities=9% Similarity=-0.036 Sum_probs=129.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------------
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG---------------------------- 118 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------------------------- 118 (310)
+..+.|...+++..+.. +.+..++..+...|...|++++|.+.|+...+..
T Consensus 69 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (327)
T 3cv0_A 69 EKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFF 147 (327)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CC
T ss_pred CCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence 44455566666666553 3456677777777777777777777777655321
Q ss_pred --------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHH
Q 021583 119 --------------------QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKM 178 (310)
Q Consensus 119 --------------------~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a 178 (310)
...+..++..+...|.+.|++++|.+.+++..+..- .+..+|..+...|...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP--DDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHH
Confidence 022567778888888899999999999988887643 4446788888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccchheeccCcccCChhhhhHhhhc--cCCCh
Q 021583 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKT 253 (310)
Q Consensus 179 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~ 253 (310)
.+.++...+.. +.+..+|..+..+|...|++++|.+.|++. .|+...... ......+...+..+... ..|+.
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG--EASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-------CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc--cchhhcCHHHHHHHHHHHHhcCCH
Confidence 99998887643 235778888888999999999998888762 122100000 00001134555555555 88999
Q ss_pred hhHHhhhchh
Q 021583 254 NEVETTKNPN 263 (310)
Q Consensus 254 ~~a~~~~~~m 263 (310)
++|...++..
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9998887643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.86 E-value=7.1e-10 Score=100.48 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
.+|..+..++.+.|++++|.+.|.+ .+|..+|..++.++...|++++|+++++..++. . .+..+.+.|+.+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-~--~~~~i~~~Li~~ 103 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-C--ccchhHHHHHHH
Confidence 3666666666666666666666643 245556666666666666666666655544442 2 223456666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|.+.|++++++++++ .|+..+|..+...|...|++++|...|..
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665553 25555666666666666666666666544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=85.56 Aligned_cols=168 Identities=11% Similarity=0.066 Sum_probs=123.6
Q ss_pred hHHHHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 41 RVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAW------ELEF-PLITVKKALKTLENEKDWKRIIQVTKW 113 (310)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 113 (310)
....+..+...+...+++.++ ...+++..+. +-.| ...++..+...|...|++++|.+.|+.
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A-----------~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEA-----------AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH-----------HHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHH-----------HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334444444445566666666 3444343322 2222 356899999999999999999999998
Q ss_pred HHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 021583 114 MLSK------G-QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD------HLEGTPRIFFDKMISIYYNRGMHEKMFE 180 (310)
Q Consensus 114 m~~~------g-~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~y~~li~~~~~~g~~~~a~~ 180 (310)
.... . ......+|..+...|...|++++|.+.|++..+. ...+....+|..+...|...|++++|.+
T Consensus 111 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7754 1 1234678899999999999999999999998876 2111223489999999999999999999
Q ss_pred HHHHHHHCC-----------------------------------------------CCC-CHHHHHHHHHHHHhcCCHHH
Q 021583 181 IFADMEELG-----------------------------------------------VRP-NVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 181 l~~~m~~~g-----------------------------------------------~~p-~~~ty~~li~~~~~~g~~~~ 212 (310)
++++..+.. ..| ...++..+...|...|++++
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 270 (283)
T 3edt_B 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270 (283)
T ss_dssp HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 999887530 113 24678889999999999999
Q ss_pred HHHHHHh
Q 021583 213 YEKLKKK 219 (310)
Q Consensus 213 a~~l~~~ 219 (310)
|..+|++
T Consensus 271 A~~~~~~ 277 (283)
T 3edt_B 271 AHTLEDC 277 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-07 Score=76.84 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
+++...+..+-..+.+.|++++|...|+...+.. +-+...+..+-..+.+.|++++|+..|++..+.. |.+...|..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 4567788889999999999999999999988652 4567889999999999999999999999999875 345568999
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheecc
Q 021583 165 MISIYYNR-----------GMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKG 232 (310)
Q Consensus 165 li~~~~~~-----------g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~ 232 (310)
+-..|... |++++|...++...+. .| +...|..+-.+|...|++++|...|++. .+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~ 146 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQA----------LA 146 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------HH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHH----------Hh
Confidence 99999999 9999999999998874 46 4788999999999999999999998762 11
Q ss_pred CcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 233 KRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 233 ~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
.. .+...+..+-.. ..|++++|...++.....
T Consensus 147 ~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 147 LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 234445555555 899999999999887653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.8e-06 Score=74.05 Aligned_cols=194 Identities=9% Similarity=-0.004 Sum_probs=142.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...+++..+.. +.+...+..+...|.+.|++++|.+.++...+.. +.+..++..+...|...|++++|.+.|
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45566677788777654 4567888999999999999999999999988663 457788999999999999999999999
Q ss_pred HHHHhcCCCCChHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCC
Q 021583 147 TKIFLDHLEGTPRIFFD------------KMISIYYNRGMHEKMFEIFADMEELGVRPN-V----SIVSMMGNAFQKLGM 209 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~------------~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~----~ty~~li~~~~~~g~ 209 (310)
++..+..- .+...+. .+...+.+.|++++|.+.++...+.. |+ . ..|..+..+|...|+
T Consensus 212 ~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 212 RECLKLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccC
Confidence 99888754 2223333 23666889999999999999988753 43 2 335567788999999
Q ss_pred HHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 210 LDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 210 ~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+++|...+++.... .+.+...+..+... ..|++++|.+.++...... |+.......+
T Consensus 288 ~~~A~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l 346 (359)
T 3ieg_A 288 PVEAIRICSEVLQM-----------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHH
Confidence 99999998762100 02234455555555 8999999999998887643 5544333333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.8e-08 Score=82.43 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=116.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK------GQGR-TMGTYFLLLNALAEDGRLDEAEE 144 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~ty~~ll~~~~~~g~~~~A~~ 144 (310)
+.+++.+....+.+....++..+...|...|++++|...|+...+. +-.| ...++..+...|...|++++|.+
T Consensus 27 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 106 (283)
T 3edt_B 27 ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 106 (283)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3555555544343335678999999999999999999999997754 2223 46788999999999999999999
Q ss_pred HHHHHHhcC-----CCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCCHH
Q 021583 145 LWTKIFLDH-----LEGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEEL------GVRPN-VSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 145 ~~~~m~~~~-----~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~------g~~p~-~~ty~~li~~~~~~g~~~ 211 (310)
.|++..+.. -..+. ..+|..+...|...|++++|.+.+++..+. +-.|+ ..++..+..+|...|+++
T Consensus 107 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 186 (283)
T 3edt_B 107 LCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186 (283)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 999888661 11122 348999999999999999999999998764 22333 478899999999999999
Q ss_pred HHHHHHHh
Q 021583 212 KYEKLKKK 219 (310)
Q Consensus 212 ~a~~l~~~ 219 (310)
+|..++++
T Consensus 187 ~A~~~~~~ 194 (283)
T 3edt_B 187 DAETLYKE 194 (283)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999976
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-07 Score=89.86 Aligned_cols=162 Identities=10% Similarity=0.036 Sum_probs=133.3
Q ss_pred hHHHHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 021583 41 RVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG 120 (310)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 120 (310)
+.-.++.+...+.+.+++.+| ...+++..+.. +-+..+|+.+-..|.+.|++++|.+.|++..+.. .
T Consensus 8 ~a~al~nLG~~~~~~G~~~eA-----------i~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P 74 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEA-----------VRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-P 74 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH-----------HHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred cHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344555555556666777777 66666666554 3357899999999999999999999999988653 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 021583 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSM 199 (310)
Q Consensus 121 p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~ 199 (310)
-+..+|..|-..|.+.|++++|++.|++..+.. +.+...|+.+-..|.+.|++++|++.|++..+. .|+ ...|..
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~ 150 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCN 150 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhh
Confidence 357899999999999999999999999998874 345568999999999999999999999998874 564 688999
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 021583 200 MGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 200 li~~~~~~g~~~~a~~l~~~ 219 (310)
|..+|...|++++|.+.+++
T Consensus 151 L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHH
Confidence 99999999999999998875
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=5.3e-06 Score=70.20 Aligned_cols=175 Identities=11% Similarity=-0.032 Sum_probs=133.2
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLEN----EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DGRL 139 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~ 139 (310)
..++|...+++..+. -+..++..+-..|.. .+++++|.+.|+...+.+ +..++..+-..|.. .++.
T Consensus 21 ~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 94 (273)
T 1ouv_A 21 DFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNT 94 (273)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCH
Confidence 344457777776663 346778888888888 999999999999988776 77888888888988 9999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFFDKMISIYYN----RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK----LGMLD 211 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~ 211 (310)
++|.+.|++..+.+ +...+..+-..|.. .+++++|.+.|+...+.+ +...+..+-..|.. .++.+
T Consensus 95 ~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 95 NKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp HHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999988875 23578888888888 999999999999988865 56777888888888 89999
Q ss_pred HHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--c----CCChhhHHhhhchhhcCCC
Q 021583 212 KYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--T----EGKTNEVETTKNPNESSEE 268 (310)
Q Consensus 212 ~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~----~g~~~~a~~~~~~m~~~~~ 268 (310)
+|...|++... . .+...+..+-.. . .++.++|.++++.....+-
T Consensus 168 ~A~~~~~~a~~----------~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 168 KALASYDKACD----------L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHHHH----------T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH----------C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 99999876210 0 112222223222 3 7889999998887766654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.4e-07 Score=88.18 Aligned_cols=158 Identities=9% Similarity=0.029 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
+..+|+.|-..|.+.|++++|.+.|++..+.. .-+..+|..|-..|.+.|++++|++.|++..+.. |.....|+.+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 36789999999999999999999999988662 3357899999999999999999999999998875 34556899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCccchheeccCcccCChhhh
Q 021583 167 SIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPKWEYRYIKGKRVRIPAKPK 242 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~~~~~~~~~~~~~~~~~~~ 242 (310)
..|...|++++|++.|++..+. .| +...|+.+..+|...|++++|...|++ +.|+ +...+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--------------~~~a~ 148 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD--------------FPDAY 148 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------------CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------ChHHH
Confidence 9999999999999999998874 46 478999999999999999999999886 2333 34455
Q ss_pred hHhhhc--cCCChhhHHhhhchh
Q 021583 243 YELDSA--TEGKTNEVETTKNPN 263 (310)
Q Consensus 243 ~~li~~--~~g~~~~a~~~~~~m 263 (310)
..|... ..|++++|++.+++.
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHH
Confidence 555555 889999988887554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.9e-08 Score=82.82 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=131.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSK-------GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD------H 153 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~------~ 153 (310)
+..++..+...|...|++++|..+|+...+. .......++..+...|...|++++|.+.|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567889999999999999999999998763 23345678889999999999999999999988875 2
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccc
Q 021583 154 LEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL------GVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWE 226 (310)
Q Consensus 154 ~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~ 226 (310)
-.+....+|..+...|...|++++|.+.+++..+. +-.| ....+..+...|...|++++|..+|++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 182 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI--- 182 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 21122348999999999999999999999998754 2233 3477889999999999999999998762100
Q ss_pred hheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 227 YRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
+..............+..+... ..|++++|.+.++....
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000001112223445555555 88999999999987764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.7e-07 Score=74.79 Aligned_cols=150 Identities=8% Similarity=-0.070 Sum_probs=120.7
Q ss_pred CcHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------
Q 021583 67 NVKEEVYGALDSFIAWE--LEFP----LITVKKALKTLENEKDWKRIIQVTKWMLSKG---------------------- 118 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~--~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------------------- 118 (310)
+..+.|...+++..+.. ..++ ...+..+...|.+.|++++|.+.|+......
T Consensus 52 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHH
Confidence 33444466666655432 2223 5788999999999999999999999988632
Q ss_pred --CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 021583 119 --QGR-TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVS 195 (310)
Q Consensus 119 --~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 195 (310)
..| +...+..+...+...|++++|.+.|++..+..- .+..+|..+...|.+.|++++|.+.++...+.. +.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~ 208 (258)
T 3uq3_A 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVR 208 (258)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHH
Confidence 222 356788889999999999999999999998753 455689999999999999999999999998753 23578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 196 IVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 196 ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|..+..+|...|++++|...|++
T Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 209 AYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 899999999999999999999876
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.5e-07 Score=81.63 Aligned_cols=150 Identities=9% Similarity=-0.122 Sum_probs=116.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...++++.+.+ |+...|..+..+|.+.|++++|.+.|+.+.+.+ +.+..+|..+...|.+.|++++|...|
T Consensus 20 g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34445588888888776 789999999999999999999999999998764 456789999999999999999999999
Q ss_pred HHHHhcCCCC----------------------------------------------------------------------
Q 021583 147 TKIFLDHLEG---------------------------------------------------------------------- 156 (310)
Q Consensus 147 ~~m~~~~~~~---------------------------------------------------------------------- 156 (310)
+++.+.+-..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 9987664200
Q ss_pred -------ChHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH-----CCCC-------C-CHHHHHHHHHHHHhcCCHHHH
Q 021583 157 -------TPRIFFDKMISIYY---NRGMHEKMFEIFADMEE-----LGVR-------P-NVSIVSMMGNAFQKLGMLDKY 213 (310)
Q Consensus 157 -------~~~~~y~~li~~~~---~~g~~~~a~~l~~~m~~-----~g~~-------p-~~~ty~~li~~~~~~g~~~~a 213 (310)
.+...+..+...+. +.|++++|.++++++.+ ..-. | +..+|..+..+|...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 00112222223333 38999999999999987 3112 2 357888899999999999999
Q ss_pred HHHHHh
Q 021583 214 EKLKKK 219 (310)
Q Consensus 214 ~~l~~~ 219 (310)
...|++
T Consensus 257 ~~~~~~ 262 (514)
T 2gw1_A 257 HEDIKK 262 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999976
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-06 Score=63.44 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
..+.+...++++.+.+ +.+...+..+...+...|++++|..+|+.+...+ ..+...+..+...+...|++++|.++|+
T Consensus 16 ~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 93 (136)
T 2fo7_A 16 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3444577777777654 4467888899999999999999999999988664 4567888999999999999999999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
++.+..- .+..+|..+...|.+.|++++|.+.++++...
T Consensus 94 ~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 94 KALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9988753 44568899999999999999999999998764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=8.9e-06 Score=68.79 Aligned_cols=176 Identities=8% Similarity=-0.077 Sum_probs=139.4
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 021583 66 SNVKEEVYGALDSFIAWELEFPLITVKKALKTLEN----EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DG 137 (310)
Q Consensus 66 ~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g 137 (310)
.+..+++...+++..+.+ +..++..+-..|.. .+++++|.+.|+...+.+ +..++..+-..|.. .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 445666688888887776 67888899999999 999999999999988875 78899999999999 99
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 021583 138 RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN----RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK----LGM 209 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~ 209 (310)
+.++|.+.|++..+.+ +...+..+-..|.. .+++++|.+.|+...+.+ +...+..+-..|.. .++
T Consensus 129 ~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCC
T ss_pred CHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999875 33578888888888 999999999999988764 56788889999999 999
Q ss_pred HHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--c----CCChhhHHhhhchhhcCC
Q 021583 210 LDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--T----EGKTNEVETTKNPNESSE 267 (310)
Q Consensus 210 ~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~----~g~~~~a~~~~~~m~~~~ 267 (310)
.++|...|++... .+ +...+..|-.. . .++.++|.++++.-...+
T Consensus 202 ~~~A~~~~~~a~~----------~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 202 FKEALARYSKACE----------LE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHH----------TT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh----------CC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9999999876210 00 12222222222 3 788888888887766554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-06 Score=80.11 Aligned_cols=147 Identities=11% Similarity=0.001 Sum_probs=125.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.+...+++..+.. |+...+..+...|.+.|++++|.+.|+...+.. ..+..+|..+...|...|++++|.+.|
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 44566778888877754 557889999999999999999999999988663 346888999999999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++..+..- .+...|..+...|...|++++|.+.+++..+.. +.+...|..+...|...|++++|...|++
T Consensus 334 ~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 334 QKAQSLNP--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHCT--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99998753 344689999999999999999999999998753 23467899999999999999999999976
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-05 Score=70.10 Aligned_cols=180 Identities=10% Similarity=-0.054 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLE-------NEKDW-------KRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDG 137 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g 137 (310)
|..++++..... +-+...|..+...+. +.|++ ++|..+|+...+.-..-+...|..+...+.+.|
T Consensus 35 a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~ 113 (308)
T 2ond_A 35 VMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 344444444432 234445555554443 23553 566666666554211223445666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 021583 138 RLDEAEELWTKIFLDHLEGTPRI-FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ-KLGMLDKYEK 215 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~-~~g~~~~a~~ 215 (310)
++++|.++|++..+..- .+.. .|..+...+.+.|++++|.++|+...+.. +++...|........ ..|+.++|..
T Consensus 114 ~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 114 KYEKVHSIYNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp CHHHHHHHHHHHHTSSS--SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665321 1122 56666666666666666666666655432 112233332222211 2466666666
Q ss_pred HHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 216 LKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 216 l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
+|++... . .+.+...|..+... ..|+.++|...+++....
T Consensus 191 ~~~~al~----------~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 191 IFELGLK----------K-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHH----------H-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHH----------h-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6544100 0 01123344444444 556666666666555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-07 Score=83.89 Aligned_cols=183 Identities=8% Similarity=-0.040 Sum_probs=143.7
Q ss_pred CcHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIA-----WEL--------EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNAL 133 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~-----~~~--------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~ 133 (310)
+..+.|...++++.+ ..- +.+..++..+...+...|++++|...|+...+.. |+..++..+...|
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~ 280 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIM 280 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHH
Confidence 555566777777766 311 2235678889999999999999999999988764 3488999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 134 AEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKY 213 (310)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 213 (310)
...|++++|.+.|++..+..- .+...|..+...|...|++++|.+.++...+..- .+...+..+...|...|++++|
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLDS--NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTCT--TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcCc--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988653 3446899999999999999999999999987532 2567899999999999999999
Q ss_pred HHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 214 EKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 214 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
..++++.... .+.+...+..+... ..|++++|.+.++....
T Consensus 358 ~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 358 ETLFSEAKRK-----------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHH-----------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9998763100 01123445445444 89999999999987754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.2e-07 Score=82.15 Aligned_cols=143 Identities=8% Similarity=-0.074 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHH
Q 021583 70 EEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED---------GRLD 140 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~---------g~~~ 140 (310)
++|...+++..+.. +-+...|..+-..|.+.|++++|.+.|+...+. .|+...+..+-..|... |+++
T Consensus 120 ~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~ 196 (474)
T 4abn_A 120 PEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVM 196 (474)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHH
Confidence 55577777777655 345889999999999999999999999998876 47789999999999999 9999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcC
Q 021583 141 EAEELWTKIFLDHLEGTPRIFFDKMISIYYNR--------GMHEKMFEIFADMEELGVRP----NVSIVSMMGNAFQKLG 208 (310)
Q Consensus 141 ~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~--------g~~~~a~~l~~~m~~~g~~p----~~~ty~~li~~~~~~g 208 (310)
+|++.|++..+..- .+...|..+-..|... |++++|.+.|+...+. .| +...|..+..+|...|
T Consensus 197 ~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g 272 (474)
T 4abn_A 197 DSVRQAKLAVQMDV--LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEE 272 (474)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcC
Confidence 99999999998753 4556899999999999 9999999999998875 35 6899999999999999
Q ss_pred CHHHHHHHHHh
Q 021583 209 MLDKYEKLKKK 219 (310)
Q Consensus 209 ~~~~a~~l~~~ 219 (310)
++++|.+.|++
T Consensus 273 ~~~~A~~~~~~ 283 (474)
T 4abn_A 273 SYGEALEGFSQ 283 (474)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999876
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.63 E-value=6.6e-06 Score=71.28 Aligned_cols=182 Identities=9% Similarity=0.016 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHH
Q 021583 70 EEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MG-TYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~-ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
++|..++++..+.-.+-+...|..+...+.+.|++++|.++|+...+. .|+ .. .|..+...+.+.|++++|.++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 556777777666311335678999999999999999999999999874 454 33 89999999999999999999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccc
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYY-NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWE 226 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~ 226 (310)
+..+..- .+...|........ ..|+.++|.++|+...+.. +-+...|..++..+.+.|+.++|..+|++...
T Consensus 159 ~a~~~~p--~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---- 231 (308)
T 2ond_A 159 KAREDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT---- 231 (308)
T ss_dssp HHHTSTT--CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----
T ss_pred HHHhcCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----
Confidence 9988643 23334544333322 3699999999999987642 12578899999999999999999999876210
Q ss_pred hheeccCcccC--ChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 227 YRYIKGKRVRI--PAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 227 ~~~~~~~~~~~--~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
...+.+ ....|..++.. ..|+.++|..++++...
T Consensus 232 -----~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 232 -----SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp -----SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -----ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 001122 34567666666 78999999999887754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-06 Score=79.47 Aligned_cols=180 Identities=10% Similarity=-0.006 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 69 KEEVYGALDSFIAWELEFP-------LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDE 141 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~ 141 (310)
.+++...++++.+.. +.+ ..++..+-..+...|++++|.+.|+...+. .|+..++..+...|...|++++
T Consensus 218 ~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 218 LTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence 445677777776554 222 235777778889999999999999998876 4668889999999999999999
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 021583 142 AEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYP 221 (310)
Q Consensus 142 A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~ 221 (310)
|.+.|++..+..- .+..+|..+...|...|++++|.+.++...+.. +-+...|..+..+|...|++++|...+++..
T Consensus 295 A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 295 FFKFFQKAVDLNP--EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998753 445689999999999999999999999998753 1246889999999999999999999987621
Q ss_pred CCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 222 PPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 222 p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
.. .+.+...+..+... ..|++++|.+.++....
T Consensus 372 ~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 372 LK-----------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HH-----------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh-----------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 00 01223444445444 89999999999987654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.9e-06 Score=66.54 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
.|...+...-..+.+.|++++|.+.|+...+..-.++...+..+-..+...|++++|.+.|++..+.. |.+...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence 35678888889999999999999999998877544778888889999999999999999999999764 3455689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 166 ISIYYNRGMHEKMFEIFADMEELGVRPN-V-------SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~g~~p~-~-------~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
-..|...|++++|.+.++...+. .|+ . ..|..+-..+...|++++|...|++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 99999999999999999998874 343 4 4588888889999999999999987
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.3e-06 Score=69.72 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=114.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR--TMGTYFLLLNALAEDGRLDEAEE 144 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~ty~~ll~~~~~~g~~~~A~~ 144 (310)
+..+.|...+++..+.. +-+...+..+...|.+.|++++|.+.|+...+.+-.+ ...+|..+...|...|++++|.+
T Consensus 17 ~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp TCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 34455577777777654 2345578888889999999999999999988743222 24558889999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|++..+..- .+..+|..+-..|...|++++|.+.++...+. .| +...|..+...+...+++++|.+.|++
T Consensus 96 ~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 96 QYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988753 34468999999999999999999999987765 44 467777777344445699999999876
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.4e-06 Score=68.82 Aligned_cols=163 Identities=13% Similarity=0.065 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--HHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP--RIFFDKMI 166 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~y~~li 166 (310)
..+......+.+.|++++|...|+...+.. +-+...+..+...|...|++++|.+.|++..+..-. ++ ..+|..+-
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA-TKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT-TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc-hhHHHHHHHHHH
Confidence 344556778889999999999999988763 234558888999999999999999999999984321 22 23589999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhh
Q 021583 167 SIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELD 246 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li 246 (310)
..|...|++++|.+.++...+.. +-+...|..+...|...|++++|...|++.... .+.+...+..+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------~~~~~~~~~~l~ 149 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----------TTTDPKVFYELG 149 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----------SCCCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----------CCCcHHHHHHHH
Confidence 99999999999999999988743 124588999999999999999999999874211 122334444444
Q ss_pred -hc-cCCChhhHHhhhchhhc
Q 021583 247 -SA-TEGKTNEVETTKNPNES 265 (310)
Q Consensus 247 -~~-~~g~~~~a~~~~~~m~~ 265 (310)
.. ..+++++|.+.++....
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLE 170 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33 55688888888876654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=9.8e-06 Score=68.01 Aligned_cols=148 Identities=13% Similarity=-0.001 Sum_probs=106.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...+++..+.+ +.+..+|..+...|.+.|++++|.+.|+...+.. +.+..++..+...|.+.|++++|.+.|
T Consensus 57 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (275)
T 1xnf_A 57 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDL 134 (275)
T ss_dssp TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHH
Confidence 33444477777777654 4468889999999999999999999999988653 335788899999999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------------------------CCCC--
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELG-------------------------------VRPN-- 193 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g-------------------------------~~p~-- 193 (310)
+++.+..- +...+...+..+...|++++|...+....... ..|+
T Consensus 135 ~~a~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (275)
T 1xnf_A 135 LAFYQDDP---NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA 211 (275)
T ss_dssp HHHHHHCT---TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHhCC---CChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccccc
Confidence 99988643 22233444445566788888888886554321 0111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 194 ---VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 194 ---~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
...|..+..+|...|++++|...|++
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35666777777777777777777765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-06 Score=72.31 Aligned_cols=133 Identities=12% Similarity=-0.017 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC--CCh-
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGR-TMGTYFLLLNALAED-GRLDEAEELWTKIFLDHLE--GTP- 158 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~-g~~~~A~~~~~~m~~~~~~--~~~- 158 (310)
..+|+.+-..|.+.|++++|...|+...+. |-.. -..+|+.+-..|... |++++|+..|++..+..-. ...
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 468999999999999999999999986543 2111 146788899999996 9999999999987764210 011
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 159 -RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV------SIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 159 -~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~------~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
..+|+.+-..|.+.|++++|...|+...+....... ..|..+..++...|++++|...|++.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 237899999999999999999999998875432221 26788888999999999999999873
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-05 Score=65.50 Aligned_cols=137 Identities=13% Similarity=0.068 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
.++|...+++..+..-+++...+..+-.++.+.|++++|.+.|+...+.. +-+..+|..+-..|...|++++|.+.|++
T Consensus 23 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 101 (228)
T 4i17_A 23 YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTE 101 (228)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34447788887777644777887779999999999999999999988663 23567889999999999999999999999
Q ss_pred HHhcCCCCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH
Q 021583 149 IFLDHLEGTPR-------IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN---VSIVSMMGNAFQKLGML 210 (310)
Q Consensus 149 m~~~~~~~~~~-------~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~ 210 (310)
..+..- .+. ..|..+-..+...|++++|++.|+...+. .|+ ...|..+..+|...|+.
T Consensus 102 al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 102 GIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 988753 333 35788888889999999999999998764 576 47788888888887777
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=8.6e-06 Score=65.96 Aligned_cols=125 Identities=13% Similarity=0.072 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
..+..+-..+.+.|++++|.+.|+.. +.|+...|..+...|.+.|++++|.+.|++..+..- .+...|..+-..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHH
Confidence 34556677888999999999999876 467889999999999999999999999999988753 445689999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCC--------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 169 YYNRGMHEKMFEIFADMEELG--------------VRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g--------------~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|...|++++|.+.|+...+.. ..|+ ...|..+..+|...|++++|...|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999988743 2222 37888999999999999999999876
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-05 Score=69.38 Aligned_cols=177 Identities=7% Similarity=-0.024 Sum_probs=138.8
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKD-WKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..++|...+++..+.+ +-+...|+.+-..+.+.|+ +++|+..|+...... .-+...|..+-..|.+.|++++|+..
T Consensus 111 g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~ 188 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEF 188 (382)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 45566788888887765 4467889999999999997 999999999988763 34678999999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCHHHH-----HHHHH
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQK-LGMLDKY-----EKLKK 218 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~-~g~~~~a-----~~l~~ 218 (310)
|++..+..- .+...|..+-..+.+.|++++|++.++.+.+.. | +...|+.+..+|.. .|..++| +..|+
T Consensus 189 ~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 189 IADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 999998753 556789999999999999999999999998854 4 57899999999999 6665777 35555
Q ss_pred h---CCCCccchheeccCcccCChhhhhHhhhc--cCC--ChhhHHhhhchh
Q 021583 219 K---YPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEG--KTNEVETTKNPN 263 (310)
Q Consensus 219 ~---~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g--~~~~a~~~~~~m 263 (310)
+ +.|+ +...|..+-.. ..| +.++|.+.+..+
T Consensus 265 ~Al~l~P~--------------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 265 EMIKLVPH--------------NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHSTT--------------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHCCC--------------CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 4 2332 23333333322 344 688888888776
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-05 Score=57.43 Aligned_cols=116 Identities=21% Similarity=0.205 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...+..+...+.+.|++++|.+.|+.+.+.. ..+..++..+...+.+.|++++|..+|+++.+..- .+..+|..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHH
Confidence 5678888889999999999999999988653 34678888999999999999999999999988753 44568899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 207 (310)
.|...|++++|.+.++++.+.. +-+...+..+...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 9999999999999999987643 12445555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-05 Score=69.71 Aligned_cols=187 Identities=7% Similarity=0.005 Sum_probs=127.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ-GRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
+...|+++.+.+ .++..++..+..++...|++++|+++++.-...|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345666666555 56677777888999999999999999999766653 2367888899999999999999999999998
Q ss_pred hcCCCCC-----hHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 021583 151 LDHLEGT-----PRIFFDKMISIYY--NRG--MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYP 221 (310)
Q Consensus 151 ~~~~~~~-----~~~~y~~li~~~~--~~g--~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~ 221 (310)
+.. + +..+...|..+++ ..| +.++|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.
T Consensus 164 ~~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NAI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 863 3 2455666666633 334 899999999998764 3664555666669999999999999986532
Q ss_pred CCccchheeccCcccCChhhhhHhh--hccCCChhhHHhhhchhhcCC
Q 021583 222 PPKWEYRYIKGKRVRIPAKPKYELD--SATEGKTNEVETTKNPNESSE 267 (310)
Q Consensus 222 p~~~~~~~~~~~~~~~~~~~~~~li--~~~~g~~~~a~~~~~~m~~~~ 267 (310)
.....+... ...-+-+..+.-.+| ....|+ +|.+++..+....
T Consensus 239 ~~~p~~~~k-~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQK-ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTC-HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred Hhccccccc-ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 110000000 000012344442232 225565 7888888776544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-05 Score=75.18 Aligned_cols=144 Identities=11% Similarity=-0.095 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
+|...+++..+.. +-+...+..+-..|.+.|++++|.+.|++..+.. .-+...+..+-..|...|++++|.+.|++..
T Consensus 7 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 7 RELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455555554433 3357889999999999999999999999988653 3457889999999999999999999999998
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHh
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL---GMLDKYEKLKKK 219 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~a~~l~~~ 219 (310)
+..- .+...|..+-..|.+.|++++|.+.+++..+.. .-+...+..+..+|... |+.++|.+.+++
T Consensus 85 ~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 85 DAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8753 445689999999999999999999999988753 22578889999999999 999999999876
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-05 Score=73.71 Aligned_cols=164 Identities=7% Similarity=-0.002 Sum_probs=135.2
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHH
Q 021583 85 EFPLITVKKALKTLENEKDW-KRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFD 163 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~ 163 (310)
+.+...+..+-..|...|++ ++|.+.|+...+.. .-+..+|..+-..|.+.|++++|.+.|++..+.. ++...|.
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~ 174 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KNKVSLQ 174 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CCHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCHHHHH
Confidence 34678899999999999999 99999999988663 3458899999999999999999999999999875 3347899
Q ss_pred HHHHHHHHc---------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc--------CCHHHHHHHHHhC---CC
Q 021583 164 KMISIYYNR---------GMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKL--------GMLDKYEKLKKKY---PP 222 (310)
Q Consensus 164 ~li~~~~~~---------g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~--------g~~~~a~~l~~~~---~p 222 (310)
.+-..|... |++++|++.+++..+.. | +...|..+..+|... |++++|...|++. .|
T Consensus 175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999 99999999999988753 4 578999999999999 9999999998762 22
Q ss_pred CccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 223 PKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
. ...+...+..+-.. ..|++++|.+.++....
T Consensus 253 ~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 253 K-----------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp G-----------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-----------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 01345555555555 89999999999987754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-05 Score=72.36 Aligned_cols=179 Identities=10% Similarity=0.039 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT--MGTYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
.|..++++..+.-.+-+...|..+...+.+.|++++|..+|+...+. .|+ ...|..++..+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45555555443212335788999999999999999999999999875 454 35899999999999999999999999
Q ss_pred HHhcCCCCChHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCcc
Q 021583 149 IFLDHLEGTPRIFFD--KMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKW 225 (310)
Q Consensus 149 m~~~~~~~~~~~~y~--~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~ 225 (310)
..+..- .+...|- +++ .+...|+.++|.++|+...+. .| +...|..++..+.+.|+.++|..+|++...
T Consensus 382 Al~~~~--~~~~~~~~~a~~-~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~--- 453 (530)
T 2ooe_A 382 AREDAR--TRHHVYVTAALM-EYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT--- 453 (530)
T ss_dssp HHTCTT--CCTHHHHHHHHH-HHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---
T ss_pred HHhccC--CchHHHHHHHHH-HHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh---
Confidence 887632 2112222 222 234689999999999988764 35 578899999999999999999999877210
Q ss_pred chheeccCccc--CChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 226 EYRYIKGKRVR--IPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 226 ~~~~~~~~~~~--~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
..... ....+|...+.. ..|+.+.+..+..++..
T Consensus 454 ------~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 454 ------SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp ------SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred ------ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00011 123466655555 77999988888776643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-05 Score=60.56 Aligned_cols=128 Identities=9% Similarity=-0.086 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...+..+-..+...|++++|...|+...+.. ..+..++..+...+...|++++|.+.|++..+..- .+...|..+-.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHH
Confidence 3567788888999999999999999987653 34688899999999999999999999999988753 44568999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHh
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIV--SMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|...|++++|.+.++...+..- -+...+ -.+...+...|++++|...++.
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999999887531 244444 3444447888999999998865
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.2e-05 Score=56.60 Aligned_cols=119 Identities=11% Similarity=-0.019 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...+..+...+...|++++|.+.|+...... ..+...+..+...+...|++++|.+.+++..+..- .+...|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCHHHHHHHHH
Confidence 5677888889999999999999999988653 34678899999999999999999999999988743 44568999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGML 210 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 210 (310)
.|...|++++|.+.++...+.. +-+...+..+..++.+.|+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999987753 22567788888888877764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.34 E-value=9.1e-05 Score=69.06 Aligned_cols=180 Identities=9% Similarity=-0.041 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLEN-------EKDWK-------RIIQVTKWMLSKGQGRTMGTYFLLLNALAED 136 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~ 136 (310)
++..++++..... +-+...|..+...+.+ .|+++ +|..+|+...+.-.+-+...|..+...+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3445555555442 3456778777777775 68877 8999999877532334588999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH-HHHhcCCHHHH
Q 021583 137 GRLDEAEELWTKIFLDHLEGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGN-AFQKLGMLDKY 213 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~-~~~~~g~~~~a 213 (310)
|++++|.++|++..+..- .+ ...|..+...+.+.|+.++|.++|+...+. .|+ ...|..... .+...|+.++|
T Consensus 335 g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCccc--cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence 999999999999998632 33 348999999999999999999999998764 232 333332222 23468999999
Q ss_pred HHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 214 EKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 214 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
..+|++.. .. .+.+...|..+++. ..|+.++|..++++....
T Consensus 411 ~~~~e~al---------~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 411 FKIFELGL---------KK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHH---------HH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHH---------HH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99987621 00 02345667777766 889999999999888765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.5e-05 Score=56.81 Aligned_cols=119 Identities=7% Similarity=-0.075 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
+.+...+..+...+.+.|++++|.+.|+...+.. ..+...+..+...|...|++++|.+.|++..+..- .+...|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchHHHHH
Confidence 3456788899999999999999999999987652 34678889999999999999999999999888643 44568899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLG 208 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g 208 (310)
+...|.+.|++++|.+.++...+. .| +...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 999999999999999999998764 24 3456666666666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-05 Score=65.38 Aligned_cols=161 Identities=9% Similarity=0.036 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
+.+...+..+-..+.+.|++++|...|+...... +-+...+..+...|.+.|++++|...+++..... +.+...+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4455667788888889999999999999987652 3356788889999999999999999999887653 223333444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccchheeccCcccCChh
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWEYRYIKGKRVRIPAK 240 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~~~~~~~~~~~ 240 (310)
....+...++.++|.+.+++..+. .| +...+..+...|...|++++|...|++. .|+ ..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~------------~~~~~ 256 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT------------AADGQ 256 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------GGGGH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc------------cccch
Confidence 444467788888888888887764 35 5788889999999999999999998763 233 12244
Q ss_pred hhhHhhhc--cCCChhhHHhhhch
Q 021583 241 PKYELDSA--TEGKTNEVETTKNP 262 (310)
Q Consensus 241 ~~~~li~~--~~g~~~~a~~~~~~ 262 (310)
.+..|... ..|+.++|...+++
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHH
Confidence 55555555 66777777665544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.2e-05 Score=63.62 Aligned_cols=150 Identities=7% Similarity=-0.024 Sum_probs=112.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHh------
Q 021583 67 NVKEEVYGALDSFIAWELEFP---LITVKKALKTLENEKDWKRIIQVTKWMLSKG--QGRTMGTYFLLLNALAE------ 135 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~------ 135 (310)
+..+.|...|++..+.. +-+ ...+..+-.+|.+.|++++|...|+...+.. ......++..+-..+..
T Consensus 29 g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 29 GKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred CCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 33444578888877654 222 6778888999999999999999999988652 12225667777888888
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCChHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CH
Q 021583 136 --DGRLDEAEELWTKIFLDHLEGTPRIFF-----------------DKMISIYYNRGMHEKMFEIFADMEELGVR-P-NV 194 (310)
Q Consensus 136 --~g~~~~A~~~~~~m~~~~~~~~~~~~y-----------------~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p-~~ 194 (310)
.|++++|...|++..+..- .+...+ ..+-..|.+.|++++|...|+...+..-. + ..
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p--~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 185 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYP--NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWAD 185 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred ccchhHHHHHHHHHHHHHHCc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHH
Confidence 9999999999999988743 222233 45677889999999999999998864311 1 23
Q ss_pred HHHHHHHHHHHhc----------CCHHHHHHHHHh
Q 021583 195 SIVSMMGNAFQKL----------GMLDKYEKLKKK 219 (310)
Q Consensus 195 ~ty~~li~~~~~~----------g~~~~a~~l~~~ 219 (310)
..+..+..+|... |++++|...|++
T Consensus 186 ~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 186 DALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 5677888888866 888999999876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-05 Score=69.75 Aligned_cols=153 Identities=9% Similarity=-0.025 Sum_probs=116.8
Q ss_pred CcHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHHHHh
Q 021583 67 NVKEEVYGALDSFIAW----ELEF-PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ-GR-----TMGTYFLLLNALAE 135 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p-----~~~ty~~ll~~~~~ 135 (310)
+..+.|...+++..+. +-.+ ...++..+-..|...|+++.|.+.++...+.-- .+ ...+++.+-..|..
T Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 196 (383)
T 3ulq_A 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD 196 (383)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 5666677877777653 2111 246788999999999999999999998763311 12 24678888999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--Ch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHh
Q 021583 136 DGRLDEAEELWTKIFLDHLEG--TP--RIFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRP-NVSIVSMMGNAFQK 206 (310)
Q Consensus 136 ~g~~~~A~~~~~~m~~~~~~~--~~--~~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~ty~~li~~~~~ 206 (310)
.|++++|++.|++..+..-.. .+ ..+|+.+-..|...|++++|.+.+++..+. +-.| ...++..+..+|.+
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 999999999998877542110 11 137999999999999999999999987652 3324 35889999999999
Q ss_pred cCCHHHHHHHHHh
Q 021583 207 LGMLDKYEKLKKK 219 (310)
Q Consensus 207 ~g~~~~a~~l~~~ 219 (310)
.|++++|...+++
T Consensus 277 ~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 277 LGKIDKAHEYHSK 289 (383)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999876
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=62.51 Aligned_cols=147 Identities=7% Similarity=0.013 Sum_probs=106.4
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNA-LAEDGRLDEAEELW 146 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~-~~~~g~~~~A~~~~ 146 (310)
..+.+...+++..+.. +-+...+..+-..+.+.|++++|...|+..... .|+...+..+... +...++..+|.+.|
T Consensus 21 ~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~a~~~~ 97 (176)
T 2r5s_A 21 EHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAESPELKRL 97 (176)
T ss_dssp CHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcccchHHHHH
Confidence 3444466666544433 335778899999999999999999999987644 2344433332211 22333344678899
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++..+.. |.+...+..+-..|...|++++|...|++..+..-.+ +...+..+...|...|+.++|...|++
T Consensus 98 ~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 98 EQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 9888764 3445689999999999999999999999988754322 356889999999999999999998865
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.19 E-value=5.8e-05 Score=54.67 Aligned_cols=94 Identities=24% Similarity=0.294 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGN 202 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 202 (310)
...+..+...+...|++++|.++|+++.+..- .+..+|..+...|.+.|++++|..+++.+.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 56788889999999999999999999988753 445689999999999999999999999998753 336788999999
Q ss_pred HHHhcCCHHHHHHHHHh
Q 021583 203 AFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 203 ~~~~~g~~~~a~~l~~~ 219 (310)
.|...|++++|...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 99999999999999876
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.7e-05 Score=73.62 Aligned_cols=147 Identities=9% Similarity=-0.058 Sum_probs=123.1
Q ss_pred CcHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 021583 67 NVKEEVYGALDSFI--------AWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGR 138 (310)
Q Consensus 67 ~~~~~~~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~ 138 (310)
+..++|...+++.. +.. +.+...+..+-..|.+.|++++|.+.|+...+.. .-+...|..+-..|...|+
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCC
Confidence 55666778787776 222 3456788899999999999999999999988652 3467899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 139 LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 139 ~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
+++|.+.|++..+..- .+...|..+-..|.+.|++++ ++.|++..+. .| +...|..+..+|.+.|++++|...|
T Consensus 483 ~~~A~~~~~~al~l~P--~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 483 YDSATKHFTEVLDTFP--GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988753 344689999999999999999 9999998874 35 5688999999999999999999999
Q ss_pred HhC
Q 021583 218 KKY 220 (310)
Q Consensus 218 ~~~ 220 (310)
++.
T Consensus 558 ~~a 560 (681)
T 2pzi_A 558 DEV 560 (681)
T ss_dssp HTS
T ss_pred Hhh
Confidence 874
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.9e-05 Score=60.87 Aligned_cols=119 Identities=12% Similarity=0.055 Sum_probs=90.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g 173 (310)
+-..|.+.|++++|...|+...+.. +-+...+..+-..|...|++++|.+.|++..+.. |.+..+|..+-..|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHh
Confidence 8888999999999999999988763 3468899999999999999999999999999875 345568888888887665
Q ss_pred CH--HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 174 MH--EKMFEIFADMEELGVRPNVS--IVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 174 ~~--~~a~~l~~~m~~~g~~p~~~--ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+. +.+...+.... .|+.. .+..+-.++...|++++|...|++
T Consensus 137 ~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 137 EQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 43 34444444432 35443 344455566778999999999986
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00033 Score=59.94 Aligned_cols=170 Identities=12% Similarity=0.041 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---Ch-
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-----MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEG---TP- 158 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~---~~- 158 (310)
...+...+..+...|++++|.+.++...+..-..+ ...+..+...+...|++++|.+.+++..+..... ..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34566778889999999999999998776532211 1223445566778899999999999887643211 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheecc
Q 021583 159 RIFFDKMISIYYNRGMHEKMFEIFADMEEL-GVRPN-----VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKG 232 (310)
Q Consensus 159 ~~~y~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~-----~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~ 232 (310)
..+|+.+-..|...|++++|.+.++...+. ...|+ ..+|..+..+|...|++++|...+++...- . ..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~---~---~~ 228 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI---S---CR 228 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---H---HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH---H---Hh
Confidence 238999999999999999999999987621 11222 268999999999999999999998762100 0 00
Q ss_pred Cccc-CChhhhhHhhhc--cCCChhhH-Hhhhchh
Q 021583 233 KRVR-IPAKPKYELDSA--TEGKTNEV-ETTKNPN 263 (310)
Q Consensus 233 ~~~~-~~~~~~~~li~~--~~g~~~~a-~~~~~~m 263 (310)
.+.. .-..++..+-.. ..|+.++| .++++.-
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1111 113344444444 88899888 7766543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.8e-05 Score=66.00 Aligned_cols=169 Identities=9% Similarity=-0.072 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Ch--HH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSK----GQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEG--TP--RI 160 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~--~~ 160 (310)
.|+.....|...|++++|.+.|...... |-.++ ..+|+.+-..|.+.|++++|...|++..+..... .. ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555577888999999999999886543 32222 5789999999999999999999998876542110 11 23
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccchheec
Q 021583 161 FFDKMISIYYNR-GMHEKMFEIFADMEEL----GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWEYRYIK 231 (310)
Q Consensus 161 ~y~~li~~~~~~-g~~~~a~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~~ 231 (310)
+|+.+-..|... |++++|++.|++..+. +-.+. ..+|..+...|.+.|++++|...|++. .|+......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 196 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW-- 196 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG--
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH--
Confidence 799999999996 9999999999987652 11111 357889999999999999999998862 222110000
Q ss_pred cCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 232 GKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 232 ~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
.....+..+..+ ..|+.++|...++....
T Consensus 197 -----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 197 -----SLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp -----GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 001123333333 78999999999987654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00018 Score=61.55 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=115.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH----HH
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTM----GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR----IF 161 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~ 161 (310)
+...+..+...|++++|.++++...+.. ..|+. ..|..+...+...|+.++|.+.|++..+......+. .+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 4445778899999999999999988642 23332 233456667777889999999999998854322221 26
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcc
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEE----L-GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRV 235 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~----~-g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~ 235 (310)
|+.+-..|...|++++|.+.|+...+ . +..+. ..+|..+..+|.+.|++++|...+++... .....+.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~------~~~~~~~ 231 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE------ISCRINS 231 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HHHHTTB
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHcCc
Confidence 99999999999999999999999873 2 22232 25889999999999999999999876210 0001111
Q ss_pred cC-ChhhhhHhhhc--cCC-ChhhHHhhhchh
Q 021583 236 RI-PAKPKYELDSA--TEG-KTNEVETTKNPN 263 (310)
Q Consensus 236 ~~-~~~~~~~li~~--~~g-~~~~a~~~~~~m 263 (310)
.. -...+..+-.. ..| ..++|.+.++..
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 13344444444 677 458888777544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.9e-05 Score=57.60 Aligned_cols=117 Identities=10% Similarity=0.017 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...+-.+-..|.+.|++++|.+.|+...+.. +-+..+|..+-..|.+.|++++|...|++..+.. |.+...|..+-.
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~ 107 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN--PTQKDLVLKIAE 107 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3455677888999999999999999988663 3467899999999999999999999999988875 344568999999
Q ss_pred HHHHcCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 021583 168 IYYNRGMHEKMFEI-FADMEELGVRP-NVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 168 ~~~~~g~~~~a~~l-~~~m~~~g~~p-~~~ty~~li~~~~~~g~ 209 (310)
.|.+.|+.++|.+. ++...+ +.| +...|......+...|+
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 99999998876655 466555 346 46777777776666664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=5.3e-05 Score=64.96 Aligned_cols=149 Identities=8% Similarity=-0.039 Sum_probs=118.7
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 021583 66 SNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLL-LNALAEDGRLDEAEE 144 (310)
Q Consensus 66 ~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~l-l~~~~~~g~~~~A~~ 144 (310)
.+..+.|...+++..+.. +-+...+..+...+.+.|++++|...++..... .|+....... ...+...++.++|.+
T Consensus 130 ~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~ 206 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQ 206 (287)
T ss_dssp TTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHH
Confidence 366777788888887765 446788999999999999999999999987654 4565443333 334677888899999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVR-PNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+++..+.. |.+...+..+-..|...|++++|+..|.+..+..-. .+...+..+...|...|+.++|...|++
T Consensus 207 ~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 207 QLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 999988875 355568999999999999999999999999875322 1267899999999999999999888765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.11 E-value=6.9e-05 Score=67.22 Aligned_cols=127 Identities=11% Similarity=0.030 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGR-LDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
...|+.+-..+.+.|++++|++.|+...... .-+..+|+.+-..+...|+ +++|++.|++..+..- .+...|+.+-
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHH
Confidence 4568888888999999999999999988763 3457889999999999997 9999999999998753 4556899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 167 SIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..|...|++++|+..|+...+. .| +...|..+-.++.+.|++++|+..|++
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999999999999875 35 679999999999999999999999876
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=6.6e-05 Score=54.94 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-Ch----HHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEG-TP----RIFF 162 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~----~~~y 162 (310)
...+..+...+...|++++|...|+...+.. ..+...+..+...|...|++++|...|++..+..-.. .+ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567788888999999999999999988663 4567888899999999999999999999888763210 11 4578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 021583 163 DKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF 204 (310)
Q Consensus 163 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 204 (310)
..+...|.+.|++++|.+.|+...+. .|+......+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 88999999999999999999998874 35665555554443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00016 Score=58.33 Aligned_cols=131 Identities=9% Similarity=-0.030 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 021583 70 EEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKI 149 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m 149 (310)
+.|...+++. +.|+...+..+...|.+.|++++|.+.|+...... ..+...|..+-..|...|++++|.+.|++.
T Consensus 23 ~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 23 KGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97 (213)
T ss_dssp HHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3335555443 46788999999999999999999999999988663 456789999999999999999999999999
Q ss_pred HhcCCC--------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 150 FLDHLE--------------GTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 150 ~~~~~~--------------~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
.+..-. +.....|..+-..|.+.|++++|.+.|+...+. .|+. ..+..+++..
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~-----------~~~~~~~a~~ 164 (213)
T 1hh8_A 98 LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP-----------RHSKIDKAME 164 (213)
T ss_dssp HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG-----------GGGHHHHHHH
T ss_pred HHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc-----------ccchHHHHHH
Confidence 885421 112257999999999999999999999998864 3543 2345556655
Q ss_pred HHH
Q 021583 216 LKK 218 (310)
Q Consensus 216 l~~ 218 (310)
.++
T Consensus 165 ~~~ 167 (213)
T 1hh8_A 165 CVW 167 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=71.57 Aligned_cols=192 Identities=14% Similarity=0.056 Sum_probs=127.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcC
Q 021583 67 NVKEEVYGALDSFIAWELEFPL----ITVKKALKTLENEKDWKRIIQVTKWMLSK----GQ-GRTMGTYFLLLNALAEDG 137 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~ty~~ll~~~~~~g 137 (310)
+..+.|...+++..+.+ +.+. ..+..+...|...|++++|.+.|++..+. +- .....++..+-..|...|
T Consensus 62 g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 33444477777776653 2233 47888889999999999999999986543 21 223577888889999999
Q ss_pred CHHHHHHHHHHHHhcC----CCCChHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHC----CCCC
Q 021583 138 RLDEAEELWTKIFLDH----LEGTPRIFFDKMISIYYNRGM-----------------HEKMFEIFADMEEL----GVRP 192 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~----~~~~~~~~y~~li~~~~~~g~-----------------~~~a~~l~~~m~~~----g~~p 192 (310)
++++|.+.|++..+.. -.+....+|..+-..|...|+ +++|.+.+++..+. +-.+
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 220 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998876541 111122478899999999999 99999988876432 2222
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhh
Q 021583 193 N-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 193 ~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~ 264 (310)
. ..+|..+...|...|++++|.+.+++.... .... .........+..+... ..|++++|.+.++...
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRI---AREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---HHhc--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2 367888889999999999999998762100 0000 0000011233333333 7788888877775543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00013 Score=64.15 Aligned_cols=128 Identities=15% Similarity=0.008 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT--------------MGTYFLLLNALAEDGRLDEAEELWTKIFLDH 153 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~ 153 (310)
...+..+-..|.+.|++++|...|+...+..-... ...|..+-..|.+.|++++|.+.|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45788888899999999999999999886632221 5899999999999999999999999999875
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHh
Q 021583 154 LEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEK-LKKK 219 (310)
Q Consensus 154 ~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~-l~~~ 219 (310)
|.+...|..+-.+|...|++++|...|+...+. .| +...+..+..++.+.|+.++|.+ +|++
T Consensus 227 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999999999999998874 35 57889999999999999999843 4443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.8e-05 Score=59.81 Aligned_cols=134 Identities=6% Similarity=-0.128 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGR-TMGTYFLLLNALAEDGRLDEAEELWTKIFLD----HLEG 156 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~ 156 (310)
....++..+-..|...|++++|...+++.... +..+ ...++..+-..|...|++++|.+.+++..+. +-.+
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 34678889999999999999999999987642 2222 3567888889999999999999999887654 2111
Q ss_pred Ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 157 TP-RIFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 157 ~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.. ...++.+-..|...|++++|.+.+++..+. +-... ..++..+...|...|++++|.+.+++
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 11 237889999999999999999999887632 21111 24578888999999999999998865
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.10 E-value=9.8e-05 Score=63.27 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=112.7
Q ss_pred CcHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhc
Q 021583 67 NVKEEVYGALDSFIAWE-LEFPL----ITVKKALKTLENEKDWKRIIQVTKWMLSKGQG-RT----MGTYFLLLNALAED 136 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~-~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~ty~~ll~~~~~~ 136 (310)
+..+.+...+++..... ..|+. ..+..+...+...+++++|.+.|+...+.... ++ ..+|+.+-..|...
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 168 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN 168 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Confidence 45666777777776532 22332 13344666677778999999999998874322 33 34799999999999
Q ss_pred CCHHHHHHHHHHHHhc----CCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHh
Q 021583 137 GRLDEAEELWTKIFLD----HLEGTPR-IFFDKMISIYYNRGMHEKMFEIFADMEE----LGVRPN-VSIVSMMGNAFQK 206 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~----~~~~~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~-~~ty~~li~~~~~ 206 (310)
|++++|...|++..+. ....... .+|+.+-..|.+.|++++|.+.+++..+ .+-.+. ..+|..+-.+|.+
T Consensus 169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 248 (293)
T 3u3w_A 169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999988842 1111222 3899999999999999999999888653 344444 5889999999999
Q ss_pred cCC-HHHHHHHHHh
Q 021583 207 LGM-LDKYEKLKKK 219 (310)
Q Consensus 207 ~g~-~~~a~~l~~~ 219 (310)
.|+ .++|.+.|++
T Consensus 249 ~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 249 LEYEEAEIEDAYKK 262 (293)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHH
Confidence 994 6999888765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00017 Score=53.67 Aligned_cols=106 Identities=8% Similarity=-0.075 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
..+...-..|.+.|++++|.+.|++..+.. +.+...|..+-..|.+.|++++|++.|++..+..- .+...|..+-.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--hhhHHHHHHHHH
Confidence 456666777888888888888888877552 34677888888888888888888888888877643 444578888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPN-VSIVSM 199 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~ 199 (310)
|...|++++|.+.|+...+. .|+ ...+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~ 120 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV--DPSNEEAREG 120 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CcCCHHHHHH
Confidence 88888888888888887763 454 333333
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.3e-05 Score=66.86 Aligned_cols=164 Identities=8% Similarity=-0.070 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCh--
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGR-TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE--GTP-- 158 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~-- 158 (310)
..+|+.+...|.+.|++++|.+.|+...+. |-.. -..++..+-..|.. |++++|++.|++..+..-. ...
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 457889999999999999999999986533 2111 14677888888888 9999999999887654210 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccC
Q 021583 159 RIFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGK 233 (310)
Q Consensus 159 ~~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~ 233 (310)
..+|+.+-..|.+.|++++|.+.|++..+. +..+. ...+..+..++...|++++|...|++.. ....+..
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~---- 229 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG---- 229 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC----
Confidence 247999999999999999999999988652 22222 2367777888888999999999998733 1111111
Q ss_pred cccCChhhhhHhhhc-cCCChhhHHhh
Q 021583 234 RVRIPAKPKYELDSA-TEGKTNEVETT 259 (310)
Q Consensus 234 ~~~~~~~~~~~li~~-~~g~~~~a~~~ 259 (310)
.........++.+ ..|+.+.+.++
T Consensus 230 --~~e~~~l~~l~~~~~~~d~~~~~~~ 254 (307)
T 2ifu_A 230 --SEDCAALEDLLQAYDEQDEEQLLRV 254 (307)
T ss_dssp --SHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1112233444555 66776666553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-05 Score=71.77 Aligned_cols=187 Identities=12% Similarity=0.024 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHH
Q 021583 71 EVYGALDSFIAWELEFP----LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGRT-MGTYFLLLNALAEDGRLDE 141 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~ty~~ll~~~~~~g~~~~ 141 (310)
.|...+++..+.+ +.+ ...+..+...|...|++++|...|+..... +-.|. ..++..+-..|...|++++
T Consensus 27 ~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 105 (406)
T 3sf4_A 27 AGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 105 (406)
T ss_dssp HHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 3366666666553 223 356778888888899999999988875422 22222 4677778888888999999
Q ss_pred HHHHHHHHHhcCCC---CCh-HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH----CCCCCC
Q 021583 142 AEELWTKIFLDHLE---GTP-RIFFDKMISIYYNRGM--------------------HEKMFEIFADMEE----LGVRPN 193 (310)
Q Consensus 142 A~~~~~~m~~~~~~---~~~-~~~y~~li~~~~~~g~--------------------~~~a~~l~~~m~~----~g~~p~ 193 (310)
|...+++..+..-. +.. ..+|..+-..|...|+ +++|.+.+..... .+-.|.
T Consensus 106 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~ 185 (406)
T 3sf4_A 106 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAA 185 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHH
Confidence 99888876654210 011 2378888888888898 8888888877543 222222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchh
Q 021583 194 -VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPN 263 (310)
Q Consensus 194 -~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m 263 (310)
..+|..+...|...|++++|...+++.... ... ..........+..+... ..|++++|.+.++..
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI---AKE--FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH---HHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---HHh--cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 357788888888899999998888652100 000 00000111233333333 677777777777554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.5e-05 Score=68.62 Aligned_cols=165 Identities=9% Similarity=-0.017 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCh
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGR-TMGTYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGTP 158 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~ 158 (310)
..+++.+-..|...|++++|.+.|+...+. +-.+ ...++..+-..|...|++++|.+.|++..+. +..+..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 457888899999999999999999987633 2111 1357888999999999999999999988773 221123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCccchheec
Q 021583 159 RIFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPNVSIVSMMGNAFQKLGM---LDKYEKLKKKYPPPKWEYRYIK 231 (310)
Q Consensus 159 ~~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~~~ty~~li~~~~~~g~---~~~a~~l~~~~~p~~~~~~~~~ 231 (310)
..++..+-..|.+.|++++|.+.+++..+. +-......+..+-..|...|+ +++|..++++....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~-------- 335 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY-------- 335 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--------
Confidence 358999999999999999999999987642 111223446778888888999 88888888764210
Q ss_pred cCcccCChhhhhHhhhc--cCCChhhHHhhhchhh
Q 021583 232 GKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 232 ~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~ 264 (310)
......+..|-.. ..|++++|.++++...
T Consensus 336 ----~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 336 ----ADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1112233344444 8999999998886543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00037 Score=59.58 Aligned_cols=153 Identities=16% Similarity=0.089 Sum_probs=109.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhc
Q 021583 67 NVKEEVYGALDSFIAWELEFP-----LITVKKALKTLENEKDWKRIIQVTKWMLSKGQ---GRT--MGTYFLLLNALAED 136 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~ty~~ll~~~~~~ 136 (310)
+..+.+...+.+..+..-..+ ...+..+...+...|++++|.+.|+...+... .+. ..+|+.+-..|...
T Consensus 89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 168 (293)
T 2qfc_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN 168 (293)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHc
Confidence 445566666666555432211 12244455667788999999999999875322 122 45899999999999
Q ss_pred CCHHHHHHHHHHHHh---cCCCCCh-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHh
Q 021583 137 GRLDEAEELWTKIFL---DHLEGTP-R-IFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPN-VSIVSMMGNAFQK 206 (310)
Q Consensus 137 g~~~~A~~~~~~m~~---~~~~~~~-~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~ty~~li~~~~~ 206 (310)
|++++|...|++..+ ..-.... . .+|+.+-..|.+.|++++|.+.+++..+. +.... ..+|..+..+|.+
T Consensus 169 ~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~ 248 (293)
T 2qfc_A 169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 999999999998873 2211111 1 48999999999999999999999987542 22222 5789999999999
Q ss_pred cCCHHHH-HHHHHh
Q 021583 207 LGMLDKY-EKLKKK 219 (310)
Q Consensus 207 ~g~~~~a-~~l~~~ 219 (310)
.|+.++| ...+++
T Consensus 249 ~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 249 LEYEEAEIEDAYKK 262 (293)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHH
Confidence 9999999 776654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00021 Score=61.90 Aligned_cols=146 Identities=5% Similarity=-0.113 Sum_probs=107.3
Q ss_pred CcHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcC-
Q 021583 67 NVKEEVYGALDSFIAWEL-EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-----TMGTYFLLLNALA--EDG- 137 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~ty~~ll~~~~--~~g- 137 (310)
+..+.|.+++.+....|- .-+...+..++..+.+.|+++.|.+.++.|.+. .| +-.+...|..++. ..|
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCC
Confidence 667777888887766553 235778889999999999999999999999876 46 3566666666633 334
Q ss_pred -CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC---CC-CHHHHHHHHHHHHhc
Q 021583 138 -RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL-----GV---RP-NVSIVSMMGNAFQKL 207 (310)
Q Consensus 138 -~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~-----g~---~p-~~~ty~~li~~~~~~ 207 (310)
+.++|..+|+++.+.. ++..+-..+++++.+.|++++|++.++.+.+. +. .| |..+...+|......
T Consensus 192 ~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l 268 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ 268 (310)
T ss_dssp STTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHh
Confidence 8999999999987653 33233445555899999999999999977643 11 25 567776777777777
Q ss_pred CCHHHHHHHHHh
Q 021583 208 GMLDKYEKLKKK 219 (310)
Q Consensus 208 g~~~~a~~l~~~ 219 (310)
|+ +|.+++++
T Consensus 269 gk--~a~~l~~q 278 (310)
T 3mv2_B 269 GL--DTEDLTNQ 278 (310)
T ss_dssp TC--TTHHHHHH
T ss_pred Ch--HHHHHHHH
Confidence 76 77777765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00046 Score=49.21 Aligned_cols=98 Identities=10% Similarity=-0.088 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...+..+...+...|++++|.+.|+...... +.+...+..+...+...|++++|...+++..+..- .+...|..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHHH
Confidence 4567777888888999999999998877652 34677888888888889999999999988887643 34457888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 021583 168 IYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~ 188 (310)
.|...|++++|.+.++...+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 888999999999998887754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00013 Score=56.34 Aligned_cols=102 Identities=8% Similarity=-0.079 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...+..+-..+.+.|++++|.+.|+...... +-+...|..+-..|...|++++|.+.|++..+..- .+...|..+-.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--NDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--CCcHHHHHHHH
Confidence 4467777778888888999998888877652 34677888888888888899999888888887653 34457888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
+|.+.|++++|.+.|+...+. .||.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 888888998888888887764 3554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00011 Score=69.14 Aligned_cols=148 Identities=9% Similarity=0.058 Sum_probs=103.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 021583 101 EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~ 180 (310)
.|++++|.+.|++..+.. .-+...|..+-..|...|++++|.+.|++..+.. +.+...|..+-..|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999877542 3457889999999999999999999999998864 3455689999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccchheeccCcccCChhhhhHhhhc--cC---CC
Q 021583 181 IFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWEYRYIKGKRVRIPAKPKYELDSA--TE---GK 252 (310)
Q Consensus 181 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~---g~ 252 (310)
.+++..+.. +-+...|..+..+|...|++++|.+.|++. .|+ +...+..+... .. |+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--------------EPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHhhcccc
Confidence 999988753 225789999999999999999999998762 222 23344444444 56 88
Q ss_pred hhhHHhhhchhhcC
Q 021583 253 TNEVETTKNPNESS 266 (310)
Q Consensus 253 ~~~a~~~~~~m~~~ 266 (310)
.++|.+.++.....
T Consensus 144 ~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999888776543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00087 Score=59.39 Aligned_cols=153 Identities=11% Similarity=-0.027 Sum_probs=115.8
Q ss_pred CcHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHHh
Q 021583 67 NVKEEVYGALDSFIAWE-LEFP----LITVKKALKTLENEKDWKRIIQVTKWMLSK--GQ---GR-TMGTYFLLLNALAE 135 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~-~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~---~p-~~~ty~~ll~~~~~ 135 (310)
+..+.|...+++..+.- -.++ ..++..+-..|...|+++.|.+.++...+. .. .+ ...+++.+-..|..
T Consensus 115 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~ 194 (378)
T 3q15_A 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194 (378)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 55666778777766531 1122 457888899999999999999999986632 11 11 25678889999999
Q ss_pred cCCHHHHHHHHHHHHhc----CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhc
Q 021583 136 DGRLDEAEELWTKIFLD----HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 136 ~g~~~~A~~~~~~m~~~----~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~~~ty~~li~~~~~~ 207 (310)
.|++++|++.|++..+. +-......+++.+-..|...|++++|.+.+++..+. +-+....++..+...|.+.
T Consensus 195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 274 (378)
T 3q15_A 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC
Confidence 99999999999887753 211011237899999999999999999999988751 2222368889999999999
Q ss_pred CCHHHHHHHHHh
Q 021583 208 GMLDKYEKLKKK 219 (310)
Q Consensus 208 g~~~~a~~l~~~ 219 (310)
|+.++|...+++
T Consensus 275 g~~~~A~~~~~~ 286 (378)
T 3q15_A 275 GQTQKAFQFIEE 286 (378)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00019 Score=53.40 Aligned_cols=92 Identities=7% Similarity=-0.033 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGN 202 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~ 202 (310)
..+...-+.|.+.|++++|++.|++..+.. |.+...|..+-.+|.+.|++++|++.++...+. .| +...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHH
Confidence 567778889999999999999999998875 355678999999999999999999999998874 34 5788999999
Q ss_pred HHHhcCCHHHHHHHHHh
Q 021583 203 AFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 203 ~~~~~g~~~~a~~l~~~ 219 (310)
+|...|++++|.+.|++
T Consensus 90 ~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 90 CLVAMREWSKAQRAYED 106 (126)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 99999999999999986
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.7e-05 Score=66.46 Aligned_cols=132 Identities=17% Similarity=0.055 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCh--
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRT----MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE--GTP-- 158 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~-- 158 (310)
..++..+...|...|++++|.+.|+...+.. -.++ ..+|..+...|...|++++|...+++..+..-. ...
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 4578888999999999999999999876331 1122 348888999999999999999999987654211 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 159 RIFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 159 ~~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..+|..+-..|...|++++|.+.+++..+. +-.+. ..++..+..+|...|++++|.+.+++
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 247899999999999999999999987643 21221 56888999999999999999999876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00031 Score=52.19 Aligned_cols=99 Identities=4% Similarity=-0.164 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
.+...+..+-..+.+.|++++|...|+...... ..+...|..+...|...|++++|...|++..+..- .+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHHHHHH
Confidence 356677777778888888888888888766553 33567777788888888888888888887777642 344577778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~ 187 (310)
-..|...|++++|.+.|+...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.9e-05 Score=57.25 Aligned_cols=132 Identities=17% Similarity=0.042 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCh--
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQ-GRT----MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE--GTP-- 158 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~-- 158 (310)
..++..+-..|...|++++|.+.++...+..- .++ ..++..+-..|...|++++|.+.+++..+..-. .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34678888889999999999999998764311 112 257888999999999999999999987654211 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 159 RIFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 159 ~~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..++..+-..|...|++++|.+.+++..+. +-.+. ..++..+...|...|++++|.+.+++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 237888899999999999999999887642 22222 36788889999999999999999865
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00032 Score=54.28 Aligned_cols=99 Identities=11% Similarity=-0.033 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
+...+..+-..|.+.|++++|.+.|+...+.. .-+...|..+-..|.+.|++++|+..|++..+..- .+...|..+-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 35678888889999999999999999988663 34788899999999999999999999999988753 4556899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 021583 167 SIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
..|...|++++|.+.|+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999998764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0001 Score=57.00 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMG 201 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li 201 (310)
...+..+-..+.+.|++++|...|++..+.. |.+...|..+-.+|...|++++|.+.|+...+. .| +...|..+-
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 4677788889999999999999999999875 355568999999999999999999999998874 35 468899999
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 021583 202 NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~ 219 (310)
.+|...|++++|...|++
T Consensus 112 ~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999999876
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00011 Score=62.91 Aligned_cols=98 Identities=5% Similarity=-0.115 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
+...+..+-..+.+.|++++|...|+...+.. .-+...|..+-..|.+.|++++|++.+++..+.. +.+...|..+-
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 45677888889999999999999999987652 3378889999999999999999999999988764 34556899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 021583 167 SIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~ 187 (310)
.+|...|++++|.+.|+...+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00026 Score=54.28 Aligned_cols=115 Identities=6% Similarity=-0.074 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
..+.|...+++..+.. +.+...+..+...+.+.|++++|.+.|+...+.. ..+...|..+...+...|++++|.+.|+
T Consensus 28 ~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 28 DYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3444467777766654 3467889999999999999999999999988663 4467889999999999999999999999
Q ss_pred HHHhcCCCCChHHHH--HHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 148 KIFLDHLEGTPRIFF--DKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y--~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
+..+..- .+...+ -.+...+.+.|++++|.+.+....
T Consensus 106 ~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 106 TVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9988754 333344 344444778899999999888754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0003 Score=57.03 Aligned_cols=163 Identities=10% Similarity=0.105 Sum_probs=115.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhcC
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFL----------------LLNALAEDGRLDEAEELWTKIFLDH 153 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~----------------ll~~~~~~g~~~~A~~~~~~m~~~~ 153 (310)
+-.....+.+.|++++|...|+...+. .|+ ...|.. +-..|.+.|++++|...|++..+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 334455677899999999999998765 243 445555 8889999999999999999999875
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHhCCCCccchhee
Q 021583 154 LEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGM--LDKYEKLKKKYPPPKWEYRYI 230 (310)
Q Consensus 154 ~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~--~~~a~~l~~~~~p~~~~~~~~ 230 (310)
|.+...|..+-..|...|++++|.+.|+...+. .| +...|..+..+|...|+ .+.+...++.....
T Consensus 85 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~------- 153 (208)
T 3urz_A 85 --PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP------- 153 (208)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-------
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC-------
Confidence 345568999999999999999999999998874 45 46888888888876654 34455555442110
Q ss_pred ccCcccCChh-hh-hHhhhccCCChhhHHhhhchhhcCCCCCchh
Q 021583 231 KGKRVRIPAK-PK-YELDSATEGKTNEVETTKNPNESSEEPEAAA 273 (310)
Q Consensus 231 ~~~~~~~~~~-~~-~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~ 273 (310)
.+... .| ..+.....|++++|.+.++..... .|+..
T Consensus 154 -----~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 154 -----TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred -----CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 11111 11 122222678899999999877653 36543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0033 Score=57.76 Aligned_cols=140 Identities=12% Similarity=-0.054 Sum_probs=94.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLEN----EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DGR 138 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~ 138 (310)
+..++|...+++..+.| +...+..|-..|.. .+++++|.+.|+...+.| +...+..|-..|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 34455566666666654 35566666677776 777788888777776654 55666666666666 677
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 021583 139 LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN----RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK----LGML 210 (310)
Q Consensus 139 ~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~ 210 (310)
.++|.+.|++..+.+. ...+..|-..|.. .++.++|.+.|+...+.| +...+..|-..|.. .++.
T Consensus 131 ~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 7788887777776643 2355666666665 667777777777776654 56666677777766 6777
Q ss_pred HHHHHHHHh
Q 021583 211 DKYEKLKKK 219 (310)
Q Consensus 211 ~~a~~l~~~ 219 (310)
++|.++|++
T Consensus 204 ~~A~~~~~~ 212 (490)
T 2xm6_A 204 AISAQWYRK 212 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.98 E-value=9.6e-05 Score=57.97 Aligned_cols=112 Identities=10% Similarity=0.011 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHH
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNA-LAEDGRL--DEAEELWTK 148 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~-~~~~g~~--~~A~~~~~~ 148 (310)
+...+++..+.. +.+...|..+-..|...|++++|...|+...+.. ..+...+..+... |...|+. ++|.+.|++
T Consensus 29 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 29 QLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 344444444333 2344555555556666666666666666554332 1234455555555 4455555 666666665
Q ss_pred HHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 149 IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 149 m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
..+..- .+...|..+...|...|++++|...++...+
T Consensus 107 al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 107 ALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555432 2233555555556666666666666665554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.4e-05 Score=61.59 Aligned_cols=160 Identities=14% Similarity=0.035 Sum_probs=107.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCChHHHHHHHHHHHHHcC
Q 021583 98 LENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGTPRIFFDKMISIYYNRG 173 (310)
Q Consensus 98 ~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~y~~li~~~~~~g 173 (310)
....|++++|.++++..... ......++..+-..|...|++++|...+++..+. +..+....+++.+-..|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34679999999966665432 2245688899999999999999999999987762 221112247899999999999
Q ss_pred CHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCccc-CChhhhhHhh
Q 021583 174 MHEKMFEIFADMEEL----GVRP--NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVR-IPAKPKYELD 246 (310)
Q Consensus 174 ~~~~a~~l~~~m~~~----g~~p--~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~-~~~~~~~~li 246 (310)
++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++.... . ...+.. .....+..+-
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~---~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY---A---QQADDQVAIACAFRGLG 154 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---H---HHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---H---HhccchHHHHHHHHHHH
Confidence 999999999887642 2122 2366888899999999999999998762100 0 000000 1122233344
Q ss_pred hc--cCCChhhHHhhhchhh
Q 021583 247 SA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 247 ~~--~~g~~~~a~~~~~~m~ 264 (310)
.. ..|++++|.+.++...
T Consensus 155 ~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHH
Confidence 43 7899999988876543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.9e-05 Score=66.58 Aligned_cols=192 Identities=12% Similarity=0.009 Sum_probs=126.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcC
Q 021583 67 NVKEEVYGALDSFIAWELEFP----LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGR-TMGTYFLLLNALAEDG 137 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~g 137 (310)
+..+.|...+++..+.. +.+ ...+..+...|...|++++|.+.++..... +..| ...++..+...|...|
T Consensus 19 g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 34444577777776653 223 367888889999999999999999886532 2222 2567788888999999
Q ss_pred CHHHHHHHHHHHHhcCCCC--Ch--HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHC----C
Q 021583 138 RLDEAEELWTKIFLDHLEG--TP--RIFFDKMISIYYNRGM--------------------HEKMFEIFADMEEL----G 189 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~~--~~--~~~y~~li~~~~~~g~--------------------~~~a~~l~~~m~~~----g 189 (310)
++++|.+.+++..+..-.. .. ..+|..+-..|...|+ +++|.+.+++.... +
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998866542110 11 1378888999999999 99999888876432 2
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhh
Q 021583 190 VRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 190 ~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~ 264 (310)
-.|. ..++..+...|...|++++|...+++.... ... ..........+..+... ..|++++|.+.++...
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI---AKE--FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HHH--HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHh--cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222 357888888999999999999998762100 000 00001112233333333 7788888888876553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00012 Score=51.98 Aligned_cols=95 Identities=8% Similarity=-0.056 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT--PRIFFDKMIS 167 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~y~~li~ 167 (310)
.+..+...+.+.|++++|...|+...+.. ..+...+..+-..+...|++++|.+.|++..+..- . +...|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE--DEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccchHHHHHHHHH
Confidence 44455555666666666666666655442 23455556666666666666666666666655432 2 3345666666
Q ss_pred HHHHc-CCHHHHHHHHHHHHH
Q 021583 168 IYYNR-GMHEKMFEIFADMEE 187 (310)
Q Consensus 168 ~~~~~-g~~~~a~~l~~~m~~ 187 (310)
.|.+. |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 66666 666666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00012 Score=57.30 Aligned_cols=116 Identities=8% Similarity=0.087 Sum_probs=94.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH-HHHcCCH--
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI-YYNRGMH-- 175 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~-~~~~g~~-- 175 (310)
...|++++|...++...+.. ..+...|..+-..|...|++++|...|++..+..- .+...|..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence 45788999999998877653 45678999999999999999999999999888753 445678888888 7889998
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 176 EKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 176 ~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++|.+.++...+.. | +...+..+...|...|++++|...|++
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99999999988753 4 468888999999999999999999986
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00047 Score=50.63 Aligned_cols=98 Identities=12% Similarity=0.009 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...+..+-..+.+.|++++|.+.|+...+.. ..+...|..+-..|.+.|++++|.+.|++..+..- .+...|..+-.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence 3456777788889999999999999877653 34678888899999999999999999998888753 44568888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 021583 168 IYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~ 188 (310)
.|...|++++|.+.|+...+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999887653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00015 Score=64.34 Aligned_cols=164 Identities=7% Similarity=-0.026 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCh
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGR-TMGTYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGTP 158 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~ 158 (310)
..+++.+-..|...|++++|.+.|+...+. +-.+ ...++..|-..|...|++++|.+.|++..+. +. +..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhH
Confidence 457888999999999999999999986642 2211 2467888999999999999999999988762 21 233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCccchheec
Q 021583 159 RIFFDKMISIYYNRGMHEKMFEIFADMEELG----VRPNVSIVSMMGNAFQKLGM---LDKYEKLKKKYPPPKWEYRYIK 231 (310)
Q Consensus 159 ~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p~~~ty~~li~~~~~~g~---~~~a~~l~~~~~p~~~~~~~~~ 231 (310)
..++..+-..|.+.|++++|.+.++...+.. -+.....+..+-..|...|+ +++|...+++....
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~-------- 332 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH-------- 332 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh--------
Confidence 4589999999999999999999999987632 12223566777777778888 88888887762210
Q ss_pred cCcccCChhhhhHhhhc--cCCChhhHHhhhchhh
Q 021583 232 GKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 232 ~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~ 264 (310)
......+..+-.. ..|++++|.++++...
T Consensus 333 ----~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 333 ----AYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111233334444 8999999998886653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00035 Score=51.90 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 021583 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMM 200 (310)
Q Consensus 121 p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~l 200 (310)
.+...|..+-..+...|++++|...|++..+..- .+...|..+-..|...|++++|...++...+.. +-+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4678899999999999999999999999888753 455689999999999999999999999988754 2257889999
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 021583 201 GNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 201 i~~~~~~g~~~~a~~l~~~ 219 (310)
..+|...|++++|...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999876
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0005 Score=57.49 Aligned_cols=166 Identities=11% Similarity=0.001 Sum_probs=121.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT---MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEG-TPRIF 161 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ 161 (310)
.+...+-.+-..+.+.|++++|...|+...+.. +-+ ...+..+-..|.+.|++++|...|++..+..-.. .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677778888899999999999999988653 112 6788889999999999999999999999874311 22346
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHH
Q 021583 162 FDKMISIYYN--------RGMHEKMFEIFADMEELGVRPNV-SIV-----------------SMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 162 y~~li~~~~~--------~g~~~~a~~l~~~m~~~g~~p~~-~ty-----------------~~li~~~~~~g~~~~a~~ 215 (310)
|..+-.+|.. .|++++|.+.|+...+.. |+. ... ..+..+|.+.|++++|..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 7788888888 999999999999988743 432 222 456788999999999999
Q ss_pred HHHhC---CCCccchheeccCcccCChhhhhHhhhc--c----------CCChhhHHhhhchhhc
Q 021583 216 LKKKY---PPPKWEYRYIKGKRVRIPAKPKYELDSA--T----------EGKTNEVETTKNPNES 265 (310)
Q Consensus 216 l~~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~--~----------~g~~~~a~~~~~~m~~ 265 (310)
.|++. .|+... ....+..+..+ . .|++++|.+.++....
T Consensus 170 ~~~~~l~~~p~~~~-----------~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 170 TYEAVFDAYPDTPW-----------ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHCTTSTT-----------HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCch-----------HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 98773 233110 11122222222 2 2888999999987765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00073 Score=50.53 Aligned_cols=99 Identities=11% Similarity=-0.086 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT----MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
.+...+..+...+.+.|++++|.+.|+...+. .|+ ...|..+...|...|++++|.+.+++..+..- .+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHHH
Confidence 35677888888999999999999999998765 466 67888888899999999999999999887643 34567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
|..+-..|...|++++|.+.|+...+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888889999999999999999988764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00028 Score=54.06 Aligned_cols=97 Identities=9% Similarity=-0.092 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...+..+-..+.+.|++++|...|+...... ..+...|..+-..|...|++++|.+.|++..+..- .+...|..+-.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHH
Confidence 4556667777888888888888888877552 34677777888888888888888888888877642 34457778888
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 021583 168 IYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~ 187 (310)
+|...|++++|.+.|+...+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0052 Score=56.42 Aligned_cols=141 Identities=7% Similarity=-0.094 Sum_probs=111.3
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 021583 66 SNVKEEVYGALDSFIAWELEFPLITVKKALKTLEN----EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DG 137 (310)
Q Consensus 66 ~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g 137 (310)
....+++...+++..+.| +...+..|-..|.. .+++++|.+.|+...+.| +...+..|-..|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 455677788888877765 46677777778877 789999999999988776 56777778777877 78
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 021583 138 RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN----RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK----LGM 209 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~ 209 (310)
+.++|.+.|++..+.+. ...+..|-..|.+ .++.++|.+.|+...+.| +...+..|...|.. .++
T Consensus 166 d~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQGN----VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 89999999998888653 3567778788887 889999999999887754 56677777777776 788
Q ss_pred HHHHHHHHHh
Q 021583 210 LDKYEKLKKK 219 (310)
Q Consensus 210 ~~~a~~l~~~ 219 (310)
.++|.++|++
T Consensus 239 ~~~A~~~~~~ 248 (490)
T 2xm6_A 239 YTQSRVLFSQ 248 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00039 Score=56.98 Aligned_cols=167 Identities=9% Similarity=0.010 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-HHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFDK 164 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~y~~ 164 (310)
...+-.+...+.+.|++++|...|+.+.+.. -.|. ...+..+..+|.+.|++++|.+.|++..+..-..+.. ..+-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455566677888999999999999988642 1222 4577788899999999999999999988764321211 13444
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcC
Q 021583 165 MISIYYN------------------RGMHEKMFEIFADMEELGVRPNV-SIV-----------------SMMGNAFQKLG 208 (310)
Q Consensus 165 li~~~~~------------------~g~~~~a~~l~~~m~~~g~~p~~-~ty-----------------~~li~~~~~~g 208 (310)
+-.+|.. .|+.++|.+.|+...+. -|+. ..+ -.+...|.+.|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444443 57899999999998864 2442 122 24556788999
Q ss_pred CHHHHHHHHHhC---CCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCC
Q 021583 209 MLDKYEKLKKKY---PPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSE 267 (310)
Q Consensus 209 ~~~~a~~l~~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~ 267 (310)
++++|...|+++ .|+.. .....+..+..+ ..|+.++|.+.++.+...+
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~-----------~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQ-----------ATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHCcCCC-----------ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 999999998763 23211 011233444445 8999999999998776543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00021 Score=52.44 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 021583 120 GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSM 199 (310)
Q Consensus 120 ~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~ 199 (310)
..+...+..+...+...|++++|.+.|++..+..- .+...|..+...|...|++++|.+.++...+.. ..+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 34578888999999999999999999999987643 455689999999999999999999999988753 235788999
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 021583 200 MGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 200 li~~~~~~g~~~~a~~l~~~ 219 (310)
+..+|...|++++|.+.|++
T Consensus 90 la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999876
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00051 Score=54.94 Aligned_cols=122 Identities=15% Similarity=0.055 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC---C-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQ-GR---T-----------MGTYFLLLNALAEDGRLDEAEELWTKIFLDH 153 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p---~-----------~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~ 153 (310)
..+..+-..+.+.|++++|.+.|+......- .| . ...|..+-..|.+.|++++|...+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4566777788899999999999999876421 12 1 3788889999999999999999999998874
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 021583 154 LEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYE 214 (310)
Q Consensus 154 ~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~ 214 (310)
- .+...|..+-.+|...|++++|.+.|+...+. .| +...+..+..++...++.+++.
T Consensus 119 p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 K--NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred c--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45568999999999999999999999998764 34 5677888888888887777765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00033 Score=52.91 Aligned_cols=98 Identities=10% Similarity=-0.033 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...+..+-..+.+.|++++|...|+...... +.+...|..+-..|.+.|++++|...|++..+..- .+...|..+-.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHH
Confidence 3455566677788888888888888877552 34677778888888888888888888888887643 34457778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 021583 168 IYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~ 188 (310)
+|...|++++|.+.|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=7e-05 Score=64.12 Aligned_cols=132 Identities=17% Similarity=0.051 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCh--
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQ-GRT----MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE--GTP-- 158 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~-- 158 (310)
...+..+...|...|++++|.+.++...+..- .++ ..++..+...|...|++++|.+.+++..+..-. ...
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 45788888999999999999999998763311 112 347888999999999999999999987654211 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 159 RIFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 159 ~~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..++..+...|...|++++|.+.+++..+. +-.+. ..++..+...|.+.|++++|.+.+++
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 247888999999999999999999987642 21121 46788899999999999999999876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0013 Score=53.71 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=106.7
Q ss_pred cHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHHHh--------
Q 021583 68 VKEEVYGALDSFIAWEL-EF-PLITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTM-GTYFLLLNALAE-------- 135 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~ty~~ll~~~~~-------- 135 (310)
..+.|...|+++.+..- .| ....+..+..+|.+.|++++|...|+...+.. -.+.. .++-.+-..+..
T Consensus 19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~ 98 (225)
T 2yhc_A 19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQG 98 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhh
Confidence 34444778888776532 12 24678888999999999999999999988652 12221 234334444433
Q ss_pred ----------cCCHHHHHHHHHHHHhcCCCCChHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 136 ----------DGRLDEAEELWTKIFLDHLEGTPRIFF-----------------DKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 136 ----------~g~~~~A~~~~~~m~~~~~~~~~~~~y-----------------~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
.|+.++|...|+++.+..- .+...+ -.+-..|.+.|++++|...|+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~P--~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 99 FFGVDRSDRDPQQARAAFSDFSKLVRGYP--NSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD 176 (225)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTCT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhccchhhcCcHHHHHHHHHHHHHHHHCc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 5789999999999998642 222233 23455788999999999999999874
Q ss_pred CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 189 GVRPNV----SIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 189 g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
. |+. ..+..+..+|.+.|+.++|.+.++.+
T Consensus 177 ~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 177 Y--PDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp S--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 442 56888999999999999999998763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00046 Score=56.13 Aligned_cols=178 Identities=10% Similarity=-0.065 Sum_probs=129.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDG----RLDEAEELWT 147 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g----~~~~A~~~~~ 147 (310)
+...|++..+.| +..++..|-..|...+++++|.+.|+...+.| +...+..|-..|.. + +.++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 356666666654 57888888889999999999999999988876 56777778777877 6 8999999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYN----RGMHEKMFEIFADMEELGVR-PNVSIVSMMGNAFQK----LGMLDKYEKLKK 218 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~g~~-p~~~ty~~li~~~~~----~g~~~~a~~l~~ 218 (310)
+..+.+. ...+..|-..|.. .++.++|++.|+...+.|.. -+...+..|-..|.. .++.++|.++|+
T Consensus 78 ~A~~~g~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 78 KAVEAGS----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHTTC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHCCC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9987764 2467777777776 88999999999998876532 026778888888888 889999999987
Q ss_pred hCCCCccchheeccCcccCChhhhhHhhhc---cCC-----ChhhHHhhhchhhcCCCCCch
Q 021583 219 KYPPPKWEYRYIKGKRVRIPAKPKYELDSA---TEG-----KTNEVETTKNPNESSEEPEAA 272 (310)
Q Consensus 219 ~~~p~~~~~~~~~~~~~~~~~~~~~~li~~---~~g-----~~~~a~~~~~~m~~~~~~p~~ 272 (310)
+-. .. ..+...+..|-.. ..| +.++|.++++.-...|.+...
T Consensus 154 ~A~----------~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~ 203 (212)
T 3rjv_A 154 GSS----------SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGC 203 (212)
T ss_dssp HHH----------HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHH----------Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 621 00 0111122222222 223 788888888777666654433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00049 Score=70.25 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
|...|.-++.+|.+.|++++|.+.+..-++.. ++....+.+..+|++.+++++.+.+. + .++...|..+-
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVG 1202 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHH
Confidence 34555566666666666666666665544432 33233334666666666665433332 1 12334555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCccc-----------hheeccC-
Q 021583 167 SIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYP-PPKWE-----------YRYIKGK- 233 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~-p~~~~-----------~~~~~~~- 233 (310)
..|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++-. +..|. |......
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777777777777777773 478888888999999999988887632 22111 1111111
Q ss_pred -cccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh-hhhhhhhHHHHHHhhhccc
Q 021583 234 -RVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL-EETEANTKELLEEADAISN 298 (310)
Q Consensus 234 -~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~l~~~a~~~~~ 298 (310)
++..+...+..++.. +.|.+++|..+++.-...+ +-....|..+- -...-..+.+.+.+....-
T Consensus 1274 l~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1274 LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 233455556666666 8999999999986665443 22333343333 2222244455555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00026 Score=54.18 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMM 200 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~l 200 (310)
+...+..+-..+...|++++|...|++..+..- .+...|..+-.+|...|++++|.+.|+...+.. | +...|..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHH
Confidence 345677788899999999999999999988753 455689999999999999999999999988743 5 46888899
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 021583 201 GNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 201 i~~~~~~g~~~~a~~l~~~ 219 (310)
..+|...|++++|...|++
T Consensus 96 g~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999876
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00043 Score=49.39 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMG 201 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 201 (310)
+...+..+...+...|++++|.+.|++..+..- .+...|..+...|...|++++|...++...+.. +.+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 356778888999999999999999999988753 445689999999999999999999999988753 22578899999
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 021583 202 NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~ 219 (310)
.+|...|++++|.+.+++
T Consensus 80 ~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 999999999999999876
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.6e-05 Score=68.03 Aligned_cols=170 Identities=12% Similarity=0.036 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCChHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM----GTYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGTPRI 160 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~ 160 (310)
..+..+-..+...|++++|...|+...+.+- .+. ..|..+...|...|++++|.+.|++..+. +..+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 4455667788999999999999999887632 232 57888999999999999999999987654 11112224
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEEL----GVRP-NVSIVSMMGNAFQKLGM-----------------LDKYEKLKK 218 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~-----------------~~~a~~l~~ 218 (310)
+|..+-..|...|++++|.+.+++..+. +-.| ...+|..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 8999999999999999999999987643 2122 24688899999999999 999988886
Q ss_pred hCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhh
Q 021583 219 KYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 219 ~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~ 264 (310)
+... ..... .........+..+-.. ..|++++|.++++...
T Consensus 208 ~al~---~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 208 ENLK---LMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHH---HHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH---HHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5210 00000 0001122344444444 8999999999987654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00045 Score=50.75 Aligned_cols=93 Identities=8% Similarity=-0.116 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMG 201 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li 201 (310)
...+..+-..+.+.|++++|.+.|++..+..- .+...|..+-.+|.+.|++++|++.++...+.. | +...|..+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 45677788889999999999999999988753 455789999999999999999999999988753 4 578899999
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 021583 202 NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~ 219 (310)
.+|...|++++|...|++
T Consensus 80 ~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 80 TAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHH
Confidence 999999999999999876
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00037 Score=53.95 Aligned_cols=94 Identities=18% Similarity=0.099 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMM 200 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~l 200 (310)
+...+..+-..|.+.|++++|.+.|++..+..- .+...|..+-..|.+.|++++|++.|+...+.. | +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 456788888999999999999999999998753 455689999999999999999999999988753 4 57899999
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 021583 201 GNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 201 i~~~~~~g~~~~a~~l~~~ 219 (310)
..+|...|++++|...|++
T Consensus 86 g~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHH
Confidence 9999999999999999876
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00018 Score=51.02 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVR-PNVSIVSMMG 201 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~ty~~li 201 (310)
...+..+...+...|++++|...|++..+..- .+...|..+-..|...|++++|.+.++...+..-. .+...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45567788889999999999999999988753 45568999999999999999999999998875311 1478899999
Q ss_pred HHHHhc-CCHHHHHHHHHh
Q 021583 202 NAFQKL-GMLDKYEKLKKK 219 (310)
Q Consensus 202 ~~~~~~-g~~~~a~~l~~~ 219 (310)
.+|... |++++|.+.+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 999999 999999999876
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0005 Score=49.97 Aligned_cols=95 Identities=13% Similarity=0.022 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMG 201 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 201 (310)
+...+..+...+...|++++|.+.|++..+..- .+...|..+...|...|++++|.+.++...+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 456778888999999999999999999988753 445689999999999999999999999988753 23578899999
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 021583 202 NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~ 219 (310)
.+|...|++++|...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 999999999999999876
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00022 Score=56.08 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=109.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH--
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI-- 168 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~-- 168 (310)
+..+...+.+.|++++|...|+...+.. +-+...+..+-..|...|++++|+..|++..+.. | +.. +..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~-~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNS-YKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHH-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChH-HHHHHHHHH
Confidence 4456677889999999999999866431 3457888999999999999999999999887653 2 222 2222221
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccchheeccCcccCChhhhhH
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWEYRYIKGKRVRIPAKPKYE 244 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
+...+...+|.+.++...+. .| +...+..+..+|...|++++|...|++. .|+ ..+...+..
T Consensus 84 ~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~a~~~ 149 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG------------AQDGEVKKT 149 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------------TTTTHHHHH
T ss_pred HHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc------------cChHHHHHH
Confidence 22333444577888887763 46 4788999999999999999999998763 222 122345555
Q ss_pred hhhc--cCCChhhHHhhhchhh
Q 021583 245 LDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 245 li~~--~~g~~~~a~~~~~~m~ 264 (310)
+... ..|+.++|...+++..
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHH
Confidence 5555 7888888887776543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00013 Score=67.54 Aligned_cols=124 Identities=13% Similarity=0.098 Sum_probs=96.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCChH-HHH
Q 021583 96 KTLENEKDWKRIIQVTKWMLSK---GQGR----TMGTYFLLLNALAEDGRLDEAEELWTKIFLD-----HLEGTPR-IFF 162 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~-~~y 162 (310)
..+..+|++++|..++++..+. -+.| ...+++.|..+|...|++++|+.++++..+. |-.+++. .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999999886633 1222 3588999999999999999999999886644 5444444 389
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 163 DKMISIYYNRGMHEKMFEIFADMEE-----LGVR-PNV-SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 163 ~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~-p~~-~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+.|-..|...|++++|+.++++..+ .|-. |++ .+.+.|-.++...++.++|+.+|++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988653 2321 332 5567777888899999999999865
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00038 Score=52.60 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGN 202 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 202 (310)
...+..+-..+.+.|++++|...|++..+..- .+...|..+-..|.+.|++++|...|+...+.. +-+...|..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34556677788999999999999999988753 455689999999999999999999999988753 224678889999
Q ss_pred HHHhcCCHHHHHHHHHh
Q 021583 203 AFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 203 ~~~~~g~~~~a~~l~~~ 219 (310)
+|...|++++|...|++
T Consensus 95 ~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999999999999876
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0014 Score=57.76 Aligned_cols=154 Identities=12% Similarity=0.022 Sum_probs=110.6
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhc
Q 021583 66 SNVKEEVYGALDSFIAWELEFPL----ITVKKALKTLENEKDWKRIIQVTKWMLSKGQ-GRT----MGTYFLLLNALAED 136 (310)
Q Consensus 66 ~~~~~~~~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~ty~~ll~~~~~~ 136 (310)
.+..+.+...+++.....-..+. .+++.+-..+...|++++|.+.+++.....- ..+ ..++..+-..+...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 45555567777776654322222 2566777888899999999999998663210 122 24467788889999
Q ss_pred CCHHHHHHHHHHHHhc----CCC-CC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHh
Q 021583 137 GRLDEAEELWTKIFLD----HLE-GT-PRIFFDKMISIYYNRGMHEKMFEIFADMEELGVR--P--NVSIVSMMGNAFQK 206 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~----~~~-~~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~--p--~~~ty~~li~~~~~ 206 (310)
|++++|.+.+++..+. +.. .+ ....+..+-..|...|++++|...+++.....-. + ...+|..+...+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 186 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 9999999999887654 221 02 2246778888999999999999999987653221 1 24678888999999
Q ss_pred cCCHHHHHHHHHh
Q 021583 207 LGMLDKYEKLKKK 219 (310)
Q Consensus 207 ~g~~~~a~~l~~~ 219 (310)
.|++++|...+++
T Consensus 187 ~g~~~~A~~~l~~ 199 (373)
T 1hz4_A 187 RGDLDNARSQLNR 199 (373)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 9999999999876
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0003 Score=64.98 Aligned_cols=119 Identities=8% Similarity=-0.068 Sum_probs=92.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM 174 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~ 174 (310)
-..+.+.|++++|.+.|++..+.. .-+..+|..+-..|.+.|++++|++.+++..+..- .+...|..+-.+|.+.|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCC
Confidence 345667899999999999988662 34588999999999999999999999999998743 455689999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 021583 175 HEKMFEIFADMEELGVRPN-VSIVSMMGNA--FQKLGMLDKYEKLKK 218 (310)
Q Consensus 175 ~~~a~~l~~~m~~~g~~p~-~~ty~~li~~--~~~~g~~~~a~~l~~ 218 (310)
+++|++.+++..+.. |+ ...+..+..+ +.+.|++++|.++++
T Consensus 90 ~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999987642 32 3344444444 888999999999988
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=4.5e-05 Score=58.69 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=93.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCH
Q 021583 97 TLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMH 175 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~ 175 (310)
.+...|++++|...++..... .|+ ...+-.+-..|.+.|++++|++.|++..+.. |.+..+|..+-..|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCch
Confidence 344567888898888875533 233 3455668889999999999999999999875 34556899999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHh
Q 021583 176 EKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKL-KKK 219 (310)
Q Consensus 176 ~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l-~~~ 219 (310)
++|+..|+...+. .| +...|..+...|.+.|+.++|.+. +++
T Consensus 82 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~ 125 (150)
T 4ga2_A 82 DKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVER 125 (150)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999998874 46 478899999999999999876655 343
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.001 Score=49.37 Aligned_cols=106 Identities=10% Similarity=0.013 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---h--HHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT---P--RIFFD 163 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~--~~~y~ 163 (310)
.++..+-..+.+.|++++|.+.|+...+.. +-+...|..+-..|.+.|++++|++.|++..+..-... . ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456667778888888888888888877652 34577788888888888888888888887765421001 1 12566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 021583 164 KMISIYYNRGMHEKMFEIFADMEELGVRPNVSIV 197 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty 197 (310)
.+-..|...|++++|++.|+.-... .||..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 7777778888888888888876653 3555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00038 Score=51.72 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELG--VRPN----VSIV 197 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~ty 197 (310)
.++..|-+.+.+.|++++|++.|++..+.. |.+...|+.+-.+|.+.|++++|++.++...+.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 567788899999999999999999998864 3556789999999999999999999999876531 2222 2478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 021583 198 SMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 198 ~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..+-.+|...|++++|.+.|++
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 8888899999999999999876
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00067 Score=49.33 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELG--VRPN----VSI 196 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~t 196 (310)
...|..+...+...|++++|...|++..+..- .+...|..+...|...|++++|...++...... ..++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 35677888899999999999999999988753 455689999999999999999999999987642 1233 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 021583 197 VSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 197 y~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|..+..+|...|++++|.+.|++
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 88999999999999999999876
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0015 Score=57.40 Aligned_cols=192 Identities=9% Similarity=0.002 Sum_probs=122.7
Q ss_pred CcHHHHHHHHHHHH----HcCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHh
Q 021583 67 NVKEEVYGALDSFI----AWELE--FP-LITVKKALKTLENEKDWKRIIQVTKWMLSKGQG--R--TMGTYFLLLNALAE 135 (310)
Q Consensus 67 ~~~~~~~~~~~~m~----~~~~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~ty~~ll~~~~~ 135 (310)
+..+.+...+++.. +.+.. |. ...+..+-..+...|++++|...++......-. + ...+|..+-..+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 186 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 44445555555543 23332 32 346677888899999999999999987644221 1 34678888999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhc
Q 021583 136 DGRLDEAEELWTKIFLDHLEGTPRIFFD-----KMISIYYNRGMHEKMFEIFADMEELGVRP---NVSIVSMMGNAFQKL 207 (310)
Q Consensus 136 ~g~~~~A~~~~~~m~~~~~~~~~~~~y~-----~li~~~~~~g~~~~a~~l~~~m~~~g~~p---~~~ty~~li~~~~~~ 207 (310)
.|++++|...+++..+..-.......|. ..+..+...|+.++|...+++.......+ ....+..+...+...
T Consensus 187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 266 (373)
T 1hz4_A 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence 9999999999998875421111101122 33345779999999999998876533211 134577888999999
Q ss_pred CCHHHHHHHHHhCCCCccchheeccCcccCCh-hhhhHhhhc--cCCChhhHHhhhchhh
Q 021583 208 GMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPA-KPKYELDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 208 g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~-~~~~~li~~--~~g~~~~a~~~~~~m~ 264 (310)
|+.++|...+++.... ....+...+. ..+..+-.. ..|+.++|...+....
T Consensus 267 g~~~~A~~~l~~a~~~------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 267 GEFEPAEIVLEELNEN------ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH------HHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998763110 0011111111 122222333 7899999988886553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0012 Score=49.24 Aligned_cols=96 Identities=17% Similarity=0.059 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 021583 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP---RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIV 197 (310)
Q Consensus 121 p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty 197 (310)
.+...+..+...+...|++++|.+.|++..+..- .+ ...|..+-..|...|++++|.+.++...+.. +.+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA--TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 4678888899999999999999999999987643 33 4589999999999999999999999987653 2257888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 021583 198 SMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 198 ~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..+..+|...|++++|.+.|++
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00042 Score=59.80 Aligned_cols=169 Identities=9% Similarity=-0.052 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCh--H
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDH--LEGTP--R 159 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~~~~--~ 159 (310)
..|+.+...|...|++++|.+.|.+.... |-.+. ..+|+.+...|.+.|++++|...|++..+.. ...+. .
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 36778888899999999999999986533 21111 4688889999999999999999998766541 11122 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCc
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKR 234 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~ 234 (310)
.+|+.+-..|.. |++++|++.|++..+. |-.+. ..+|..+...|.+.|++++|...|++.... +.. .+
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~---~~ 189 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM---YKE---ME 189 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHH---TT
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHH---cC
Confidence 378888889988 9999999999987642 21111 467889999999999999999998762100 000 00
Q ss_pred ccC-ChhhhhHhhhc--cCCChhhHHhhhchhh
Q 021583 235 VRI-PAKPKYELDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 235 ~~~-~~~~~~~li~~--~~g~~~~a~~~~~~m~ 264 (310)
... ....+..+... ..|+.++|...++...
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 000 11133333333 6799999999998776
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0047 Score=50.00 Aligned_cols=144 Identities=13% Similarity=-0.042 Sum_probs=111.8
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEK----DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DGR 138 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~ 138 (310)
+..+++...+++..+.| +..++..|-..|.. + ++++|.+.|+...+.| +..++..|-..|.. .++
T Consensus 32 ~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d 104 (212)
T 3rjv_A 32 GDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATD 104 (212)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCC
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccC
Confidence 44556688888887766 46777777777777 6 8999999999988775 56778888888877 889
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----
Q 021583 139 LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN----RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL-G----- 208 (310)
Q Consensus 139 ~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g----- 208 (310)
.++|.++|++..+.+........+..|-..|.. .++.++|++.|+.-.+. ..+...+..|-..|... |
T Consensus 105 ~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~ 182 (212)
T 3rjv_A 105 VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEP 182 (212)
T ss_dssp HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCC
T ss_pred HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCC
Confidence 999999999998876410014578888888888 88999999999998876 23445677777777653 3
Q ss_pred CHHHHHHHHHh
Q 021583 209 MLDKYEKLKKK 219 (310)
Q Consensus 209 ~~~~a~~l~~~ 219 (310)
+.++|.++|++
T Consensus 183 d~~~A~~~~~~ 193 (212)
T 3rjv_A 183 NKQKALHWLNV 193 (212)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 89999999865
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00051 Score=66.33 Aligned_cols=148 Identities=7% Similarity=-0.025 Sum_probs=117.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..++|...+++..+.+ +-+...|..+-.+|.+.|++++|.+.|+...+.. .-+...|..+-..|.+.|++++ ++.|
T Consensus 447 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~ 523 (681)
T 2pzi_A 447 GDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFY 523 (681)
T ss_dssp TCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHH
T ss_pred CCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHH
Confidence 45667788888877665 4467889999999999999999999999988663 2356888999999999999999 9999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC--------HHHHHHHH
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGM--------LDKYEKLK 217 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~--------~~~a~~l~ 217 (310)
++..+.+- .+...|..+-..|.+.|++++|.+.|++..+ ..|+ ...|..+..++...|+ +++|.+.+
T Consensus 524 ~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 524 QTVWSTND--GVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 99988753 4556899999999999999999999998665 4576 4677777787766444 66777777
Q ss_pred HhCC
Q 021583 218 KKYP 221 (310)
Q Consensus 218 ~~~~ 221 (310)
..+.
T Consensus 600 ~~~~ 603 (681)
T 2pzi_A 600 EALP 603 (681)
T ss_dssp HTSC
T ss_pred hhCC
Confidence 6654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=53.56 Aligned_cols=87 Identities=13% Similarity=0.048 Sum_probs=62.1
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHH
Q 021583 100 NEKDWKRIIQVTKWMLSKG--QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEK 177 (310)
Q Consensus 100 ~~~~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~ 177 (310)
..|++++|...|+...+.+ -.-+...+..+-..|...|++++|.+.|++..+..- .+...|..+-.+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHH
Confidence 3577888888888877654 123456777788888888888888888888887653 344578888888888888888
Q ss_pred HHHHHHHHHHC
Q 021583 178 MFEIFADMEEL 188 (310)
Q Consensus 178 a~~l~~~m~~~ 188 (310)
|.+.++...+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0014 Score=59.47 Aligned_cols=145 Identities=11% Similarity=-0.081 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------------
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED-------------- 136 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~-------------- 136 (310)
.+...+++..... +.+..++..+...|.+.|++++|.+.|+...+.. +-+..++..+-..|...
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555565555443 3456778888888888888888888888877552 23455666555544321
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcC
Q 021583 137 -----GRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV--SIVSMMGN-AFQKLG 208 (310)
Q Consensus 137 -----g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~li~-~~~~~g 208 (310)
+..++|...|++..+..- ....+|..+-..|...|++++|++.|+...+....|.. ..+..+.. .+...|
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEAND--NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT--TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhHHHHHHHHHHHhhcCC--chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence 235677777777776543 33347888888999999999999999988775433322 12222222 234678
Q ss_pred CHHHHHHHHHh
Q 021583 209 MLDKYEKLKKK 219 (310)
Q Consensus 209 ~~~~a~~l~~~ 219 (310)
+.++|...|++
T Consensus 387 ~~~~Ai~~y~k 397 (472)
T 4g1t_A 387 CEDKAIHHFIE 397 (472)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999988875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0014 Score=57.48 Aligned_cols=115 Identities=8% Similarity=-0.045 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFP--------------LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALA 134 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~ 134 (310)
.+.|...+++..+..-... ...|..+-.+|.+.|++++|...|+...+.. ..+...|..+-.+|.
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 241 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHL 241 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444666666665542221 5789999999999999999999999988763 447889999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 021583 135 EDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKM-FEIFADME 186 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a-~~l~~~m~ 186 (310)
..|++++|...|++..+.. |.+...+..+-..+.+.|+.++| .+++..|.
T Consensus 242 ~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 242 AVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 34556899999999999999988 44666664
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00086 Score=49.30 Aligned_cols=92 Identities=7% Similarity=-0.147 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHc
Q 021583 93 KALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNR 172 (310)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~ 172 (310)
.+-..+.+.|++++|...|+...+.. .-+...|..+-..+...|++++|+..|++..+..- .+...|..+-..|.+.
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 44455666777777777777766542 23566666666777777777777777777666542 3334666777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 021583 173 GMHEKMFEIFADMEE 187 (310)
Q Consensus 173 g~~~~a~~l~~~m~~ 187 (310)
|++++|...++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00013 Score=67.67 Aligned_cols=100 Identities=9% Similarity=-0.011 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK-----G-QGR-TMGTYFLLLNALAEDGRLDEAEELWTKIFLD-----HLE 155 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~ 155 (310)
..+++.|...|...|++++|..++++..+. | -.| ...+++.|-..|...|++++|+.++++..+. |-.
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 568999999999999999999999986532 2 123 3588999999999999999999999876643 554
Q ss_pred CChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 156 GTPRI-FFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 156 ~~~~~-~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
++.+. +.+.|-.++...+.+++|+.+|..+++
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 788888999999999999999999975
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0035 Score=45.69 Aligned_cols=99 Identities=9% Similarity=0.009 Sum_probs=74.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHH
Q 021583 93 KALKTLENEKDWKRIIQVTKWMLSKGQGRTM---GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMISI 168 (310)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~ 168 (310)
.+...+.+.|++++|.+.|+...+..- .+. ..+..+-..|.+.|++++|...|++..+..-.... ...+..+-..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 455667788999999999998876421 122 47777888889999999999999998876532111 3467888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
|.+.|++++|.+.|+...+.. |+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~--p~~ 109 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY--PGS 109 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTS
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCC
Confidence 899999999999999887643 543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0011 Score=60.63 Aligned_cols=125 Identities=10% Similarity=-0.042 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT--------------MGTYFLLLNALAEDGRLDEAEELWTKIFLDH 153 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~ 153 (310)
...|..+-..|.+.|++++|...|+...+..-... ...|..+-.+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34677888899999999999999999876421111 6889999999999999999999999999875
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 154 LEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 154 ~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l 216 (310)
- .+...|..+-.+|...|++++|...|+...+. .| +...+..+..++.+.++.+++.+-
T Consensus 348 p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 348 S--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45568999999999999999999999998764 45 457788889999999999888654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00067 Score=57.88 Aligned_cols=125 Identities=6% Similarity=-0.124 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---HHHHHHHHH
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP---RIFFDKMIS 167 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~y~~li~ 167 (310)
.-.+...+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+...+.. .+ ...+..+=.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHHHHHHHHHH
Confidence 3445677889999999999999877543 654455566668899999999999998554432 22 236788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPN--VSIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
++.+.|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999875444364 245667778899999999999999873
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0049 Score=63.17 Aligned_cols=141 Identities=13% Similarity=0.048 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..+|..+-.++.+.|++++|.+.|..- -|...|.-++..|.+.|++++|.+++..-++.. .+....+.+..
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIF 1175 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHH
Confidence 566777777777777777777777442 456677777777777788877777777655543 11122334777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhh
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDS 247 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~ 247 (310)
+|++.+++++...+.. .|+...|..+-..|...|++++|..+|... ..|..+..
T Consensus 1176 aYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------------~ny~rLA~ 1229 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------------SNFGRLAS 1229 (1630)
T ss_pred HHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------------hHHHHHHH
Confidence 7777777775444431 345566667788888888888888886552 24455555
Q ss_pred c--cCCChhhHHhhhchh
Q 021583 248 A--TEGKTNEVETTKNPN 263 (310)
Q Consensus 248 ~--~~g~~~~a~~~~~~m 263 (310)
+ +.|++++|.+.+..-
T Consensus 1230 tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh
Confidence 5 667777777776544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00026 Score=50.43 Aligned_cols=94 Identities=9% Similarity=0.006 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------H
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-------V 194 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-------~ 194 (310)
+...+..+-..+.+.|++++|.+.|++..+..- .+...|..+-.+|.+.|++++|.+.++...+. .|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence 345666677777777888888888877776542 34456777777788888888888888777653 343 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 195 SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 195 ~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..+..+..++...|+.+.|...+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 4455555556666655555444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0018 Score=47.55 Aligned_cols=90 Identities=6% Similarity=-0.047 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAF 204 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~ 204 (310)
+-.+-..+.+.|++++|...|++..+.. |.+...|..+-..+...|++++|+..|+...+. .| +...+..+..+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3445677889999999999999999875 345568999999999999999999999998774 45 568889999999
Q ss_pred HhcCCHHHHHHHHHh
Q 021583 205 QKLGMLDKYEKLKKK 219 (310)
Q Consensus 205 ~~~g~~~~a~~l~~~ 219 (310)
...|++++|...|++
T Consensus 96 ~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 96 TNEHNANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 999999999999876
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0054 Score=55.54 Aligned_cols=206 Identities=8% Similarity=-0.089 Sum_probs=125.7
Q ss_pred HHHHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 021583 42 VWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEF-PLITVKKALKTLENEKDWKRIIQVTKWMLSK--- 117 (310)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 117 (310)
+..++.+...+...|++.+|+..+. +|.+++.........| ...+|+.+-..|...|++++|...++...+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~----kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLR----KAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH----HHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3444444444555566666654433 2333333322222233 4678999999999999999999999886532
Q ss_pred --C-CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHC
Q 021583 118 --G-QG-RTMGTYFLLLNALAED--GRLDEAEELWTKIFLDHLEGTPRIFFDKMISI---YYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 118 --g-~~-p~~~ty~~ll~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~---~~~~g~~~~a~~l~~~m~~~ 188 (310)
+ .. -...+|+.+-.++.+. ++.++|.+.|++..+..- .+...+..+... +...++.++|++.++...+.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p--~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP--KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 11 2356777666666654 468999999999888753 333344444443 45567888898888877654
Q ss_pred CCCC-CHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhc
Q 021583 189 GVRP-NVSIVSMMGNAFQK----LGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKN 261 (310)
Q Consensus 189 g~~p-~~~ty~~li~~~~~----~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~ 261 (310)
.| +...+..+...+.. .|+.++|.+++++... . -+.+...+..+-.. ..|++++|.+.+.
T Consensus 205 --~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~-----~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 205 --NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE-----K------APGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp --CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH-----H------CSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----h------CccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 34 45666666655554 4677888888765210 0 02233344444444 8899999999887
Q ss_pred hhhcC
Q 021583 262 PNESS 266 (310)
Q Consensus 262 ~m~~~ 266 (310)
.....
T Consensus 272 ~al~~ 276 (472)
T 4g1t_A 272 KALEY 276 (472)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.002 Score=57.30 Aligned_cols=124 Identities=11% Similarity=0.042 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSK---------------GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDH 153 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~ 153 (310)
..+..+-..+.+.|++++|.+.|+...+. --.-+..+|..+-..|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777888999999999999999987751 112345788899999999999999999999999864
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 154 LEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 154 ~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l 216 (310)
+.+...|..+-.+|...|++++|.+.|+...+. .| +...+..+..++...++.+++.+.
T Consensus 304 --p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 --PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999999999999998764 35 567778888888888888877554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00052 Score=49.91 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=66.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 021583 135 EDGRLDEAEELWTKIFLDHLE-GTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~-~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~ 212 (310)
..|++++|+..|++..+.+.. |.+...|..+-..|...|++++|.+.|+...+.. | +...+..+..+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 468899999999999987532 1223489999999999999999999999988753 4 47889999999999999999
Q ss_pred HHHHHHh
Q 021583 213 YEKLKKK 219 (310)
Q Consensus 213 a~~l~~~ 219 (310)
|...|++
T Consensus 80 A~~~~~~ 86 (117)
T 3k9i_A 80 GVELLLK 86 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0042 Score=45.24 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 021583 128 LLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN----VSIVSMMGN 202 (310)
Q Consensus 128 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~ty~~li~ 202 (310)
.+-..+...|++++|.+.|++..+..-..+. ...+..+-..|.+.|++++|...|+...+.. |+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 4556778899999999999999886432111 1478888899999999999999999988753 43 567888899
Q ss_pred HHHhcCCHHHHHHHHHh
Q 021583 203 AFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 203 ~~~~~g~~~~a~~l~~~ 219 (310)
+|...|++++|...|++
T Consensus 85 ~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999999999999876
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0042 Score=59.81 Aligned_cols=182 Identities=8% Similarity=-0.062 Sum_probs=124.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHH
Q 021583 74 GALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG---------QGRT------------MGTYFLLLNA 132 (310)
Q Consensus 74 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------~~p~------------~~ty~~ll~~ 132 (310)
.++++... .++.+...|-..+...-+.|++++|.++|+...+.. ..|+ ...|...++.
T Consensus 365 ~il~rAi~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 66666654 234456667778888888999999999999987541 1142 3468888888
Q ss_pred HHhcCCHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 021583 133 LAEDGRLDEAEELWTKIFLD-HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 211 (310)
..+.|.++.|.++|++..+. ...........+.+...+ .++.+.|.++|+...+. +.-+...|...+.-....|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999998876 321122223333333222 35589999999998875 3335566678888888899999
Q ss_pred HHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 212 KYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 212 ~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
.|..+|++....... ..-...+|...++. ..|+.+.+..+..++...
T Consensus 522 ~AR~lferal~~~~~--------~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 522 QVKSLFESSIDKISD--------SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTTTSSS--------TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999873211000 01234567777766 889999999988887653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0039 Score=52.97 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMM 200 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~l 200 (310)
+...+..+-..+.+.|++++|...|++..+..- .+...|..+-..|.+.|++++|.+.++...+. .| +...|..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 467788888999999999999999999988743 45568999999999999999999999998764 45 57889999
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 021583 201 GNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 201 i~~~~~~g~~~~a~~l~~~ 219 (310)
..+|...|++++|...|++
T Consensus 79 g~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999976
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0032 Score=50.11 Aligned_cols=120 Identities=15% Similarity=0.010 Sum_probs=84.2
Q ss_pred CcHHHHHHHHHHHHHcCC-CC---C-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWEL-EF---P-----------LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLN 131 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~-~p---~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~ 131 (310)
+..+.|...+++..+..- .| . ...|..+-.+|.+.|++++|...++...+.. ..+...|..+-.
T Consensus 52 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 130 (198)
T 2fbn_A 52 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGV 130 (198)
T ss_dssp TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 444555777777665421 11 1 2788888999999999999999999988662 456788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCC
Q 021583 132 ALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMF-EIFADMEELG 189 (310)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~-~l~~~m~~~g 189 (310)
+|...|++++|.+.|++..+..- .+...+..+...+...++.+++. ..+..|...|
T Consensus 131 ~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 131 ANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999887742 44567888888888888777776 5566655443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0032 Score=48.36 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------C----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK-------G----------QGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g----------~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
...+...-..+.+.|++++|.+.|...... . -..+...|..+-.+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445667777777888888888888776543 0 01123566666667777777777777777666
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
+.. |.+...|..+-.+|...|++++|...|+...+
T Consensus 91 ~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 653 23344666677777777777777777766655
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0012 Score=49.77 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCh--H
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGR-TMGTYFLLLNALAEDGRLDEAEELWTKIFLDH--LEGTP--R 159 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~~~~--~ 159 (310)
.++..+-..|...|++++|.+.++..... +-.+ ...++..+-..+...|++++|.+.+++..+.. ....+ .
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 47888899999999999999999986633 1111 14677888889999999999999998876541 10111 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
.++..+-..|...|++++|.+.+++..+
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3788899999999999999999988654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0051 Score=47.16 Aligned_cols=94 Identities=16% Similarity=0.039 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CC--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFLD--------HL--------EGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~~--------~~--------~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
.+...-..+.+.|++++|...|.+..+. .- .+.....|..+-.+|.+.|++++|...++...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3455566777888888888888776664 00 1233457888888888888888888888877764
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 189 GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 189 g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
. +-+...|..+..+|...|++++|...|++
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 2 22467778888888888888888888775
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0015 Score=60.23 Aligned_cols=118 Identities=7% Similarity=-0.061 Sum_probs=88.8
Q ss_pred CcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 51 TISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLL 130 (310)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll 130 (310)
.+.+.+++.+| ...+++..+.. +-+..+|..+-.+|.+.|++++|.+.++...+.. .-+..+|..+-
T Consensus 15 ~~~~~g~~~~A-----------~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 81 (477)
T 1wao_1 15 DYFKAKDYENA-----------IKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRA 81 (477)
T ss_dssp STTTTTCHHHH-----------HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHH
T ss_pred HHHHhCCHHHH-----------HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34556666666 55566655543 3458899999999999999999999999988763 34678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 021583 131 NALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI--YYNRGMHEKMFEIFA 183 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~--~~~~g~~~~a~~l~~ 183 (310)
.+|.+.|++++|++.|++..+..- .+...+..+-.+ +.+.|++++|.++++
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999988753 233456666555 888999999999988
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0018 Score=59.00 Aligned_cols=86 Identities=8% Similarity=-0.020 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCChH-HHHHHHHH
Q 021583 101 EKDWKRIIQVTKWMLSK---GQGRT----MGTYFLLLNALAEDGRLDEAEELWTKIFLD-----HLEGTPR-IFFDKMIS 167 (310)
Q Consensus 101 ~~~~~~a~~~~~~m~~~---g~~p~----~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~-~~y~~li~ 167 (310)
.|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|+.++++..+. |-.+++. .+||.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666654421 11121 355666666666666666666666654432 3322332 25666666
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 021583 168 IYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~ 186 (310)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0036 Score=56.87 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=64.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCChH-H
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKG---QGR----TMGTYFLLLNALAEDGRLDEAEELWTKIFLD-----HLEGTPR-I 160 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g---~~p----~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~-~ 160 (310)
.+..+.+.|++++|.++++...+.. +.| ...+++.|..+|...|++++|+.++++..+. |-.+++. .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667788888888888776431 222 2567778888888888888888887766533 3333333 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
+|+.|-..|...|++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 78888888888888888888777754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00092 Score=60.85 Aligned_cols=85 Identities=14% Similarity=-0.022 Sum_probs=68.0
Q ss_pred hcCCHHHHHHHHHHHHhc-----CCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHH
Q 021583 135 EDGRLDEAEELWTKIFLD-----HLEGTPR-IFFDKMISIYYNRGMHEKMFEIFADMEEL-----G-VRPNV-SIVSMMG 201 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~-----~~~~~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~-~ty~~li 201 (310)
..|++++|+.++++..+. |-.+++. .+++.|...|...|++++|+.++++..+- | --|+. .+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999887654 3323333 38999999999999999999999997632 2 12443 8899999
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 021583 202 NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~ 219 (310)
..|...|++++|+.++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHH
Confidence 999999999999999876
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.02 Score=51.15 Aligned_cols=130 Identities=11% Similarity=0.005 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCChHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMG----TYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGTPRI 160 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~----ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~ 160 (310)
++..+...|.+.|++++|.+++...... +..++.. +.+.+-..+...|+.++|.+++++.... +....-..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 5788999999999999999999987642 2222222 2223333334568899999998876643 32222234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEEL--G--VRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~--g--~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++..|...|...|++++|..++.+.... + -.+. ..+|..++..|...|++++|..++++
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 8999999999999999999999987643 2 2232 46889999999999999999999875
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.024 Score=43.86 Aligned_cols=111 Identities=13% Similarity=-0.003 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQG-R-----TM-----GTYFLLLNALAEDGRLDEAEELWTKIFLD----- 152 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-----~~-----~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----- 152 (310)
..+...-..+.+.|++++|.+.|+...+..-. | +. ..|+.+-.++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556666777888999999888886644211 1 22 37777777888888888888888777765
Q ss_pred CCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 021583 153 HLEGTPRIFF----DKMISIYYNRGMHEKMFEIFADMEE-----LGVRPNVSIVSM 199 (310)
Q Consensus 153 ~~~~~~~~~y----~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~ty~~ 199 (310)
.+.|.+...| ...-.++...|++++|++.|+...+ .|+.+......-
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1122333466 7777777778888888777777643 355555443333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0026 Score=55.79 Aligned_cols=125 Identities=13% Similarity=0.030 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMG------------------TYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------------------ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
..+..+-..+.+.|++++|...|+..... .|+.. .|..+-..|.+.|++++|+..+++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777788889999999999886654 24433 67777778888888888888888877
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHh
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNA-FQKLGMLDKYEKLKKK 219 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~-~~~~g~~~~a~~l~~~ 219 (310)
+.. +.+...|..+-.+|...|++++|.+.|+...+ +.|+ ...+..|... ....+..+++.++|++
T Consensus 258 ~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 258 TEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 23445778888888888888888888877654 2343 3344444433 2234455555555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.093 Score=47.65 Aligned_cols=187 Identities=11% Similarity=0.045 Sum_probs=111.8
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENE----KDWKRIIQVTKWMLSKGQGRTMGTYFLLLNA-L--AEDGRLD 140 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~-~--~~~g~~~ 140 (310)
..+++...+++..+.| .++...+..|-..|... +++++|.+.|+... .| +...+..|-.. | ...++.+
T Consensus 194 ~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHH
T ss_pred cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHH
Confidence 4455677777777766 44555545555666444 68888888888866 33 34445555444 3 3578888
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 021583 141 EAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG-----MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK----LGMLD 211 (310)
Q Consensus 141 ~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g-----~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~ 211 (310)
+|.+.|++..+.|. ...+..|-..|. .| +.++|++.|+.-. .-+...+..|-..|.. ..+.+
T Consensus 269 ~A~~~~~~Aa~~g~----~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~ 339 (452)
T 3e4b_A 269 QMMKYLDNGRAADQ----PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQ 339 (452)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHH
T ss_pred HHHHHHHHHHHCCC----HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHH
Confidence 88888888887663 245666666665 45 8888888887755 3355666666666665 44888
Q ss_pred HHHHHHHhCCCCccchheeccCcccCChhh--hhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 212 KYEKLKKKYPPPKWEYRYIKGKRVRIPAKP--KYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 212 ~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~--~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+|.++|++-- ..|. ++... ......+ ...+..+|..++..-...|.+.....+..+.
T Consensus 340 ~A~~~~~~Aa----------~~g~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~ 400 (452)
T 3e4b_A 340 KALDHLLTAA----------RNGQ-NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLE 400 (452)
T ss_dssp HHHHHHHHHH----------TTTC-TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------hhCh-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888876511 1111 11111 1111122 3456777777777776666554444444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.1 Score=47.38 Aligned_cols=167 Identities=12% Similarity=0.086 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 89 ITVKKALKTLENEK---DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED----GRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 89 ~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
.++..|-..|.+.| ++++|.+.|+...+.| .++...+..|-..|... ++.++|.+.|++.. .+. + ..
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~--~--~a 250 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY--P--AS 250 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS--T--HH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC--H--HH
Confidence 37778888888899 8999999999988887 35555556666666554 78999999999988 443 2 34
Q ss_pred HHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHhCCCCccchheeccC
Q 021583 162 FDKMISI-Y--YNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG-----MLDKYEKLKKKYPPPKWEYRYIKGK 233 (310)
Q Consensus 162 y~~li~~-~--~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-----~~~~a~~l~~~~~p~~~~~~~~~~~ 233 (310)
+..|-.. | ...++.++|++.|+...+.| +...+..|-..|. .| +.++|.++|++--+.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g---------- 316 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGR---------- 316 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTT----------
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCC----------
Confidence 5555554 3 45899999999999988876 6677777777777 55 999999998773321
Q ss_pred cccCChhhhhHh----hhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 234 RVRIPAKPKYEL----DSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 234 ~~~~~~~~~~~l----i~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+...+..| ..+ ...+.++|.+++..-...|.+.....+..++
T Consensus 317 ----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 317 ----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF 364 (452)
T ss_dssp ----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 11111111 111 2347777777777666666554444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.017 Score=38.87 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
.+..+-..+.+.|++++|...|+...+.. ..+...+..+-..|.+.|++++|.+.|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44444455555555555555555544331 223444555555555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0065 Score=42.78 Aligned_cols=93 Identities=10% Similarity=-0.030 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh------HH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP------RI 160 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~ 160 (310)
+...+..+-..+.+.|++++|.+.|+...+.. +.+...+..+-..|.+.|++++|.+.|++..+..- .+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS--TAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS--STTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CccHHHHHHH
Confidence 45677888899999999999999999988652 44678899999999999999999999999987643 22 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIF 182 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~ 182 (310)
.+..+-.++...|+.+.|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 4555556666666655554433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0065 Score=55.18 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=72.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HH
Q 021583 129 LLNALAEDGRLDEAEELWTKIFLDH-----LEGTPR-IFFDKMISIYYNRGMHEKMFEIFADMEEL-----G-VRPN-VS 195 (310)
Q Consensus 129 ll~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~-~~ 195 (310)
.+..+.+.|++++|++++++..+.. -.++.. .+++.|...|...|++++|+.++++..+- | --|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3556778899999999999888652 212232 38999999999999999999999987632 2 1233 38
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 196 IVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 196 ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+|+.|-..|...|++++|+.++++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 899999999999999999999876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.019 Score=38.60 Aligned_cols=82 Identities=28% Similarity=0.363 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMG 201 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li 201 (310)
...+..+-..+...|++++|++.|++..+..- .+...|..+-..|.+.|++++|.+.+++..+.. | +...+..+-
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 46677788889999999999999999887653 445678899999999999999999999987643 4 456666666
Q ss_pred HHHHhcC
Q 021583 202 NAFQKLG 208 (310)
Q Consensus 202 ~~~~~~g 208 (310)
.++.+.|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 6665543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.011 Score=42.33 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
+...+..+-..|.+.|++++|...|+...... ..+...|..+-..|...|+.++|...|++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555544331 22344455555555555555555555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.023 Score=43.96 Aligned_cols=96 Identities=9% Similarity=-0.081 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----h-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-----P-----RIFFDKMISIYYNRGMHEKMFEIFADMEEL----- 188 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~-----~~~y~~li~~~~~~g~~~~a~~l~~~m~~~----- 188 (310)
..+...-..+.+.|++++|.+.|++..+..-..+ + ...|+.+-.++.+.|++++|+..++.-.+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4456667788899999999999998887643200 1 238999999999999999999999998763
Q ss_pred CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHh
Q 021583 189 GVRPN-VSIV----SMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 189 g~~p~-~~ty----~~li~~~~~~g~~~~a~~l~~~ 219 (310)
-+.|+ ...| ...-.++...|++++|+..|++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 22676 4677 8899999999999999999875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.018 Score=51.40 Aligned_cols=164 Identities=10% Similarity=-0.043 Sum_probs=110.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGR-T---------------MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP 158 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~---------------~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 158 (310)
...+.+.|++++|.+.|....+..-.. + ..++..|...|.+.|++++|.+.+.++...--....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345678899999999999988653221 1 134788999999999999999999987754221122
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchhe
Q 021583 159 R----IFFDKMISIYYNRGMHEKMFEIFADMEE----LGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRY 229 (310)
Q Consensus 159 ~----~~y~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~ 229 (310)
. .+.+.+-..+...|+.++|.+++..... .+..+. ..++..|...|...|++++|..++++... .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~------~ 164 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR------E 164 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------H
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH------H
Confidence 1 1333333444457889999999888753 344454 47888999999999999999999876210 0
Q ss_pred eccCc-ccCChhhhhHhhhc--cCCChhhHHhhhchhh
Q 021583 230 IKGKR-VRIPAKPKYELDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 230 ~~~~~-~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~ 264 (310)
..... -.....++..+... ..|++++|...++...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 00000 01123344444444 8999999999886543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.017 Score=41.32 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 021583 106 RIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADM 185 (310)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 185 (310)
.+.+.|+...+.. .-+...+..+-..|...|++++|++.|++..+..- .+...|..+-..|...|++++|...|+..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566677666542 34678888999999999999999999999888753 44568999999999999999999999987
Q ss_pred HHCC-CCCCHHHHHHHHHHHHh
Q 021583 186 EELG-VRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 186 ~~~g-~~p~~~ty~~li~~~~~ 206 (310)
.+.. -..+......+...+.+
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHH
Confidence 6531 11344444444444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.02 Score=52.31 Aligned_cols=97 Identities=9% Similarity=0.028 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...|..+-.+|.+.|++++|...|+...+.. .-+...|..+-.+|...|++++|...|++..+.. |.+...|..+-.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 5789999999999999999999999988763 3468899999999999999999999999998764 344458999999
Q ss_pred HHHHcCCHHHHHH-HHHHHHH
Q 021583 168 IYYNRGMHEKMFE-IFADMEE 187 (310)
Q Consensus 168 ~~~~~g~~~~a~~-l~~~m~~ 187 (310)
.+.+.++.+++.+ ++..|..
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888764 4555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.044 Score=40.97 Aligned_cols=84 Identities=10% Similarity=-0.033 Sum_probs=36.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH--
Q 021583 98 LENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN-- 171 (310)
Q Consensus 98 ~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~-- 171 (310)
|...+.+++|.+.|+...+.| +...+..|-..|.. .++.++|.+.|++..+.|. ...+..|-..|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~----~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND----QDGCLILGYKQYAGK 107 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC----HHHHHHHHHHHHCCC
Confidence 333344444444444444432 33444444444444 4444555555544444432 1233444444444
Q ss_pred --cCCHHHHHHHHHHHHHC
Q 021583 172 --RGMHEKMFEIFADMEEL 188 (310)
Q Consensus 172 --~g~~~~a~~l~~~m~~~ 188 (310)
.++.++|.+.|+.-.+.
T Consensus 108 g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHC
Confidence 44444444444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.017 Score=51.26 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------------CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLD--------------HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~--------------~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
..+..+-..|.+.|++++|.+.|++..+. ...+.....|+.+-.+|.+.|++++|++.++...+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 45677888999999999999999988761 021233358999999999999999999999998874
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 190 VRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 190 ~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.| +...|..+..+|...|++++|...|++
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 35 578899999999999999999999876
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.012 Score=41.28 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
...+..+-..|.+.|++++|.+.|++..+..- .+...|..+-.+|...|++++|.+.|+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555666666666655555432 222355555555556666666655555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.038 Score=47.03 Aligned_cols=122 Identities=11% Similarity=-0.014 Sum_probs=86.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT--MGTYFLLLNALAEDGRLDEAEE 144 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~A~~ 144 (310)
+..++|.++|+.....+ |+....-.+-..+.+.+++++|+..|+...... .|. ...+..+-.++...|++++|++
T Consensus 116 g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~ 192 (282)
T 4f3v_A 116 GNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAER 192 (282)
T ss_dssp TCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455567666655433 443355555668899999999999998443321 111 2467778889999999999999
Q ss_pred HHHHHHhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 021583 145 LWTKIFLDHLEGT-PRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN 193 (310)
Q Consensus 145 ~~~~m~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 193 (310)
.|++.......|. ........-.++.+.|+.++|..+|+++... .|+
T Consensus 193 ~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 193 RLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 9999875433122 2336777778889999999999999999874 355
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.09 Score=45.31 Aligned_cols=147 Identities=5% Similarity=-0.008 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWK--RIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGR------LD 140 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~------~~ 140 (310)
.++....++.+.+.. +-+..+|+.--..+.+.|+++ ++++.++.+.+.. .-|-.+|+.--..+.+.|+ ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 344566666766655 557888888888888889888 9999999999774 4577788777666767676 89
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 141 EAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEK-MFEIFADMEELG--VRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 141 ~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~-a~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
++++.++++.+... .+...|+-+-..+.+.|+... +..+.......+ -..+...+..+...|.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~~p--~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVKCP--QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999998865 677789999999988888544 556666655432 1347789999999999999999999998
Q ss_pred Hh
Q 021583 218 KK 219 (310)
Q Consensus 218 ~~ 219 (310)
+.
T Consensus 282 ~~ 283 (306)
T 3dra_A 282 DL 283 (306)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.059 Score=51.80 Aligned_cols=151 Identities=9% Similarity=-0.036 Sum_probs=111.5
Q ss_pred CcHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCH
Q 021583 67 NVKEEVYGALDSFIAWE---------LEFP------------LITVKKALKTLENEKDWKRIIQVTKWMLSK-G-QGRTM 123 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~---------~~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~ 123 (310)
+..++|..+++++.... -.|+ ...|...+....+.|+.+.|..+|....+. + ..+..
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l 471 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI 471 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH
Confidence 45667888888876531 0132 236888888888899999999999998875 2 33444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP--NVSIVSMMG 201 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~ty~~li 201 (310)
+...+.|.-.+ .++.+.|.++|+...+.- +.+...|...+......|+.+.|..+|+......-.+ ....|..++
T Consensus 472 yi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~ 548 (679)
T 4e6h_A 472 YLENAYIEYHI-SKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI 548 (679)
T ss_dssp HHHHHHHHHTT-TSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54444444222 356999999999988873 2444578888998889999999999999987654322 237888888
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 021583 202 NAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~~ 220 (310)
.--.+.|+.+.+.++.+++
T Consensus 549 ~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 549 FFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8888999999999998763
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.016 Score=40.56 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
+...+..+-..|.+.|++++|...|+...+.. .-+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788899999999999999999999988663 335678999999999999999999999987764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.034 Score=48.50 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-----------------IFFDKMISIYYNRGMHEKMFEIFADM 185 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----------------~~y~~li~~~~~~g~~~~a~~l~~~m 185 (310)
...+..+-..+.+.|++++|...|++..+..- .+. ..|+.+-.+|.+.|++++|.+.++..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566777888899999999999999776532 222 27899999999999999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 186 EELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 186 ~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
.+. .| +...|..+..+|...|++++|...|++.
T Consensus 257 l~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 257 LTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 874 35 6789999999999999999999999874
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.13 E-value=0.72 Score=42.39 Aligned_cols=170 Identities=11% Similarity=-0.002 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--------------------------
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMG-------------------------- 124 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------------------------- 124 (310)
++..+++++.... +.+...|-..+..+.+.|+++.|.++|+..... +.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence 4556666666543 445677777788888889999999999987755 22211
Q ss_pred --------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 125 --------------TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFD--KMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 125 --------------ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~--~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
.|...++.+-+.++++.|.++|++. +..- .+...|- +.+...+ .++.+.|.++|+...+.
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLK 349 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHH
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHH
Confidence 1222222222344556666666655 2110 1111221 2222222 22466666666665543
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhh
Q 021583 189 GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 189 g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~ 264 (310)
. |+ ...+...++-..+.|+.+.|..+|++.. -....|...++- ..|+.+.+.+++++..
T Consensus 350 ~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~---------------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 350 H--PDSTLLKEEFFLFLLRIGDEENARALFKRLE---------------KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp C--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC---------------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 22 2233444444455566666666655531 134556666554 6677777766665443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.29 Score=36.31 Aligned_cols=106 Identities=13% Similarity=-0.065 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH----cCCHHH
Q 021583 102 KDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN----RGMHEK 177 (310)
Q Consensus 102 ~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~----~g~~~~ 177 (310)
+++++|.+.|+...+.| .++.. |-..|...+.+++|.+.|++..+.+. ...+..|-..|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~----~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNS----GNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCC----HHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999988887 34433 66667777889999999999988765 2567778888887 899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHh
Q 021583 178 MFEIFADMEELGVRPNVSIVSMMGNAFQK----LGMLDKYEKLKKK 219 (310)
Q Consensus 178 a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~l~~~ 219 (310)
|++.|+.-.+.| +...+..|-..|.. .++.++|.++|++
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 999999998865 56778888888888 8999999999975
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.37 Score=45.24 Aligned_cols=154 Identities=11% Similarity=-0.006 Sum_probs=117.6
Q ss_pred HHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 61 CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKD----------WKRIIQVTKWMLSKGQGRTMGTYFLLL 130 (310)
Q Consensus 61 ~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~ty~~ll 130 (310)
++.......++|...++++...+ +-+..+|+.--..+.+.|+ ++++++.++.+.+.. .-+..+|+.--
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~ 114 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 114 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34444555667788888888776 3456677776666666666 999999999998763 45678888888
Q ss_pred HHHHhcC--CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 131 NALAEDG--RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG-MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 131 ~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 207 (310)
..+.+.| ++++++++++++.+... .+..+|+---..+.+.| ..+++.+.+..+.+.... |...|+.....+.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~--~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l 191 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhh
Confidence 8888888 77999999999999875 56678888888888888 899999999998775432 678888777777663
Q ss_pred --------------CCHHHHHHHHHh
Q 021583 208 --------------GMLDKYEKLKKK 219 (310)
Q Consensus 208 --------------g~~~~a~~l~~~ 219 (310)
+.++++.+.+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHH
Confidence 556788777764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.14 Score=45.17 Aligned_cols=151 Identities=7% Similarity=-0.029 Sum_probs=99.4
Q ss_pred cCCCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cC--CHHHH---HHHHH
Q 021583 82 WELEFPLITVKKALKTLEN--EK---DWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAE---DG--RLDEA---EELWT 147 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~---~g--~~~~A---~~~~~ 147 (310)
.+.+.+..+|...+.+... .+ ++.+|..+|++..+. .|+ ...|..+--+|.. .+ ..... ...++
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 3445567778887766543 23 357899999998866 465 3444443333321 11 11111 12222
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCc
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPK 224 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~ 224 (310)
........+.+..+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|+.++|...|++ +.|..
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 222222324555688888887888899999999999999876 8988888889999999999999999976 56776
Q ss_pred cchheeccCccc
Q 021583 225 WEYRYIKGKRVR 236 (310)
Q Consensus 225 ~~~~~~~~~~~~ 236 (310)
.+|.......+.
T Consensus 344 ~t~~~~~~l~F~ 355 (372)
T 3ly7_A 344 NTLYWIENGIFQ 355 (372)
T ss_dssp HHHHHHHHSSSC
T ss_pred ChHHHHhCceee
Confidence 666654444333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.1 Score=35.77 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=29.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 131 NALAEDGRLDEAEELWTKIFLDHLEGTPRI-FFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
..+.+.|++++|.+.|++..+..- .+.. .|..+-..|...|++++|.+.|+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455556666666655555432 2333 555555555556666666666655554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.17 Score=49.00 Aligned_cols=99 Identities=14% Similarity=0.041 Sum_probs=51.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKM 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a 178 (310)
...|+++.|.++.+. -.+...|..|-..+.+.|+++.|+++|.++.. |..+..-|...|+.+..
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHH
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHH
Confidence 344555555554322 13445666666666666666666666665432 33444444445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 179 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.++.+.....|- |+....+|.+.|++++|.+++.+
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444444332 23444445556666666666544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.068 Score=41.20 Aligned_cols=98 Identities=10% Similarity=-0.034 Sum_probs=61.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 100 NEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGR----------LDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 100 ~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
+.+++++|.+.++...+.. .-+...|+.+-.++...++ +++|...|++..+..- .....|..+=.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHHH
Confidence 4445666666666655442 3355666666556665554 4578888887777642 3445777777777
Q ss_pred HHcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 170 YNRG-----------MHEKMFEIFADMEELGVRPNVSIVSMMGN 202 (310)
Q Consensus 170 ~~~g-----------~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 202 (310)
...| ++++|.+.|+...+ +.|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 7664 78888888877766 4576655554444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.43 Score=32.40 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=50.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMG-TYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
....+.+.|++++|.+.|+...+.. .-+.. .+..+-..|...|++++|.+.|++..+..-
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456778999999999999988663 33556 888899999999999999999999988754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.12 E-value=1.4 Score=37.75 Aligned_cols=153 Identities=7% Similarity=-0.062 Sum_probs=102.3
Q ss_pred HHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hh
Q 021583 62 IKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEK--DWKRIIQVTKWMLSKGQGRTMGTYFLLLNAL----AE 135 (310)
Q Consensus 62 l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~----~~ 135 (310)
+.......++|....+.+...+ +-+...|+.--..+...+ ++++++++++.+....- -+..+|+.--..+ ..
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHh
Confidence 3334444456677777777666 334566777777777777 88899999988876532 2233343332222 33
Q ss_pred c---CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 021583 136 D---GRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHE--KMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM- 209 (310)
Q Consensus 136 ~---g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~--~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~- 209 (310)
. +++++++++++++.+..- .+-.+|+----.+.+.|.++ ++++.++.+.+.... |...|+.-...+.+.|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~p--kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDP--KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred ccccCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 4 778888899888888753 45557777777777788887 888888888876543 66777766666666665
Q ss_pred -----HHHHHHHHHh
Q 021583 210 -----LDKYEKLKKK 219 (310)
Q Consensus 210 -----~~~a~~l~~~ 219 (310)
++++++.+++
T Consensus 197 ~~~~~~~eEl~~~~~ 211 (306)
T 3dra_A 197 ATDNTIDEELNYVKD 211 (306)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHH
Confidence 6777777653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.05 Score=41.96 Aligned_cols=91 Identities=10% Similarity=0.109 Sum_probs=70.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 021583 134 AEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMH----------EKMFEIFADMEELGVRPN-VSIVSMMGN 202 (310)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~----------~~a~~l~~~m~~~g~~p~-~~ty~~li~ 202 (310)
.+.+.+++|.+.+++..+.. |.+...|+.+=.++...+++ ++|+..|++..+ +.|+ ...|..+-.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 45567899999999988875 34556788887788877764 589999998877 4564 688999999
Q ss_pred HHHhcC-----------CHHHHHHHHHh---CCCCccchh
Q 021583 203 AFQKLG-----------MLDKYEKLKKK---YPPPKWEYR 228 (310)
Q Consensus 203 ~~~~~g-----------~~~~a~~l~~~---~~p~~~~~~ 228 (310)
+|...| ++++|.+.|++ +.|+...|.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 998874 89999999986 567655444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=1.7 Score=37.95 Aligned_cols=157 Identities=9% Similarity=-0.052 Sum_probs=115.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 58 LVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEK-DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED 136 (310)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~ 136 (310)
+..++.......++|....+++...+ +-+..+|+.--..+...| .+++++++++.+.... .-+..+|+.--..+.+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh
Confidence 33444444455566788888888777 445677888777777788 5999999999998763 44667777776666666
Q ss_pred -C-CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 137 -G-RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHE--------KMFEIFADMEELGVRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 137 -g-~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~--------~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 206 (310)
+ +.++++++++++.+..- .+-.+|+----.+.+.|.++ ++++.++.+.+.... |...|+..-..+.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~dp--kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDP--KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCT--TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred cCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 6 88999999999998754 55567776666666666666 899999999886543 77888888888877
Q ss_pred cCC-------HHHHHHHHHh
Q 021583 207 LGM-------LDKYEKLKKK 219 (310)
Q Consensus 207 ~g~-------~~~a~~l~~~ 219 (310)
.+. ++++++.+++
T Consensus 214 l~~~~~~~~~~~eELe~~~~ 233 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILK 233 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHH
Confidence 776 6777777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=94.65 E-value=0.67 Score=42.60 Aligned_cols=121 Identities=11% Similarity=0.168 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYF--LLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~--~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
..|...+....+.++++.|..+|+.. ... ..+...|. +.+.... .++.+.|.++|+...+... .....|...+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~--~~~~~~~~yi 361 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHP--DSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCC--CCHHHHHHHH
Confidence 34556666666778899999999988 221 12444443 3333332 2379999999999888643 2223567778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 167 SIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
....+.|+.+.|..+|+... -....|...+.-=...|+.+.+..++++
T Consensus 362 d~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88889999999999999962 2567788888877788999999998876
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.30 E-value=1.5 Score=34.28 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=60.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHH
Q 021583 98 LENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEK 177 (310)
Q Consensus 98 ~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~ 177 (310)
..+.|+++.|.++.+.+ -+...|..|-+.....|+++-|+++|.+... |..|.--|.-.|+.++
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHH
Confidence 34567777777766554 3456777777777777777777777766442 4444444555666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 178 MFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 178 a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..++-+.-...|- ++....++.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555444444331 45555556666677776666544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.7 Score=35.17 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHcCCHHHHH
Q 021583 104 WKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDG---RLDEAEELWTKIFLDHLEG-TPRIFFDKMISIYYNRGMHEKMF 179 (310)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g---~~~~A~~~~~~m~~~~~~~-~~~~~y~~li~~~~~~g~~~~a~ 179 (310)
...+.+-|++..+.|. ++..+.-.+-.++++.+ +++++..+|++..+... | .+...+=.|--+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555665555443 67777777777777777 56678888887777642 1 11223444455567788888888
Q ss_pred HHHHHHHHCCCCCC
Q 021583 180 EIFADMEELGVRPN 193 (310)
Q Consensus 180 ~l~~~m~~~g~~p~ 193 (310)
+.++...+ +.|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 88888776 3563
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.59 Score=32.67 Aligned_cols=65 Identities=18% Similarity=0.013 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKG------QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
..-+..|-..+.+.+++..|...|+...+.- -.+....+..|..+|.+.|++++|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344455555555556666655555543220 1123344455555555555555555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.21 E-value=1.1 Score=31.24 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDH-----LEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 121 p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
.+...+-.|-..+.+.|+++.|...|++..+.. ........|..|-.+|.+.|++++|..++++..+ ..|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 455667788889999999999999998766541 1113345899999999999999999999999876 35654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.8 Score=40.67 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHC--C-CCCCH------------------HHHHHHHHHHHhcCCHHHH
Q 021583 87 PLITVKKALKTLE---NEKDWKRIIQVTKWMLSK--G-QGRTM------------------GTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 87 ~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~--g-~~p~~------------------~ty~~ll~~~~~~g~~~~A 142 (310)
|...|..++..-. ..|+.+.+.+.+...... | .-++. .+...++..+...|+.++|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4555666665443 357888888888776533 2 11111 1223456777889999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE-----LGVRPNVSI 196 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~t 196 (310)
...+..+.... |.+...|-.+|.+|.+.|+..+|.+.|+...+ -|+.|+..+
T Consensus 191 ~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 191 IAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 99999988764 57777999999999999999999999998753 499999865
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.19 E-value=1.6 Score=29.97 Aligned_cols=65 Identities=8% Similarity=-0.063 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 122 TMGTYFLLLNALAEDGR---LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
|...+..+-.++...++ .++|..+|++..+.. |.+......+-..+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 466666666666553 233345555556666666666666666666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.06 E-value=1.8 Score=41.74 Aligned_cols=84 Identities=8% Similarity=-0.042 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
.+...|..+-..+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+.....|. |+.-
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-------~~~A 742 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-------FNLA 742 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------HHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-------hHHH
Confidence 4678999999999999999999999998754 35666667777888777777666666554 4444
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADM 185 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m 185 (310)
...|.+.|++++|++++.++
T Consensus 743 ~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 743 FNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHc
Confidence 55566677777777776654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=6.2 Score=34.09 Aligned_cols=144 Identities=12% Similarity=0.026 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 021583 70 EEVYGALDSFIAWELEFPLITVKKALKTLENEK--DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGR-LDEAEELW 146 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~-~~~A~~~~ 146 (310)
+.....++.+...+ +-+..+|+.--..+.+.+ .+++++++++.+.+.. .-|-.+|+----.+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34466666666655 457888888888888888 4899999999999764 5677888887777778888 69999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc----
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNR--------------GMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKL---- 207 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~--------------g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~---- 207 (310)
+++.+.+. .+...|+..-..+.+. +.++++++.+...... .| |...|+-+--.+.+.
T Consensus 169 ~~~I~~~p--~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRNF--SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHCS--CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHCC--CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcc
Confidence 99999875 5666788777666655 4577888888887764 35 567776554444444
Q ss_pred -------CCHHHHHHHHHh
Q 021583 208 -------GMLDKYEKLKKK 219 (310)
Q Consensus 208 -------g~~~~a~~l~~~ 219 (310)
+.++++.+.+++
T Consensus 245 ~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 456777777665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=6.9 Score=33.82 Aligned_cols=151 Identities=11% Similarity=0.003 Sum_probs=107.3
Q ss_pred hcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 021583 64 GLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKD----------WKRIIQVTKWMLSKGQGRTMGTYFLLLNAL 133 (310)
Q Consensus 64 ~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~ 133 (310)
......++|....+.+...+ +-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.--..+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33445556778888877766 3344556554444433332 678899999888653 45677787777777
Q ss_pred HhcC--CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 021583 134 AEDG--RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM-HEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL--- 207 (310)
Q Consensus 134 ~~~g--~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~--- 207 (310)
.+.| ++++++++++++.+... .+-.+|+----.+.+.|. .+++++.+..+.+.... |...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dp--rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 7777 48999999999999865 566688877777778888 59999999999986543 677777776666655
Q ss_pred -----------CCHHHHHHHHHh
Q 021583 208 -----------GMLDKYEKLKKK 219 (310)
Q Consensus 208 -----------g~~~~a~~l~~~ 219 (310)
+.++++++.+++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ 218 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQN 218 (331)
T ss_dssp C------CCCHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHH
Confidence 457777777765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.04 E-value=2.4 Score=29.01 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 85 EFPLITVKKALKTLENEKD---WKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
+.+...+..+-.++...++ .++|..++++..+.. +-+..+...+-..+.+.|++++|...|+++.+..-
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3456666666666654444 689999999988652 34567777788889999999999999999998754
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=90.78 E-value=8.1 Score=33.94 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 021583 120 GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVS 198 (310)
Q Consensus 120 ~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 198 (310)
..+..+|..+-..+...|++++|...+++..+.+ ++...|..+=..+.-.|++++|.+.|++-.. ..|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 5678899988888888899999999999999986 3455777777888899999999999988766 357777754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=7.6 Score=36.22 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEK--DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDG-RLDEAEEL 145 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g-~~~~A~~~ 145 (310)
.+++...++.+.+.+ +-+..+|+.--..+.+.+ +++++.+.++.+.+.. .-|-.+|+.--..+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 455667777777655 456788999888888999 7799999999999774 457888888888888888 89999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNR--------------GMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGML 210 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~--------------g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~ 210 (310)
++++.+... .+...|+..-..+.+. +.++++.+.+...... .| |...|..+--.+.+.++.
T Consensus 167 ~~~~I~~~p--~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 167 TDSLITRNF--SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHTTTTTTC--CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHCC--CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCc
Confidence 999998765 5667888887777763 4568888888877653 45 567788777777776664
Q ss_pred HH
Q 021583 211 DK 212 (310)
Q Consensus 211 ~~ 212 (310)
++
T Consensus 243 ~~ 244 (567)
T 1dce_A 243 DV 244 (567)
T ss_dssp SC
T ss_pred cc
Confidence 33
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.27 E-value=3.3 Score=31.43 Aligned_cols=79 Identities=16% Similarity=0.041 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEK---DWKRIIQVTKWMLSKGQGR--TMGTYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
.+-+.+..+.| .++..+.-.+-.++++.+ +.+++..+++...+.. .| ....+=.|--+|.+.|++++|.+.++
T Consensus 18 ~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 18 EKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444555555 378888888888999988 6669999999988764 34 23444445667799999999999999
Q ss_pred HHHhcC
Q 021583 148 KIFLDH 153 (310)
Q Consensus 148 ~m~~~~ 153 (310)
.+.+..
T Consensus 96 ~lL~ie 101 (152)
T 1pc2_A 96 GLLQTE 101 (152)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 999874
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.26 E-value=5.4 Score=31.06 Aligned_cols=132 Identities=10% Similarity=0.015 Sum_probs=92.1
Q ss_pred hHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 57 KLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED 136 (310)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~ 136 (310)
+|.-+|..-+ .+.|+++.+++ -+...|..|-....+.|+++-|.+.|+...+ |..|.-.|.-.
T Consensus 11 rF~LAL~lg~--l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~t 73 (177)
T 3mkq_B 11 RFDLALEYGN--LDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVT 73 (177)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHH
T ss_pred HHHHHHhcCC--HHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHh
Confidence 3444443333 55556665554 3478999999999999999999999988654 36777778888
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 137 GRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l 216 (310)
|+.++-.++-+.-...|- ||.-...+.-.|+++++.++|.+ .|..|.... .....|.-+.|.++
T Consensus 74 g~~e~L~kla~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~------~A~t~g~~~~a~~~ 137 (177)
T 3mkq_B 74 GDVNKLSKMQNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYA------VAKANGDEAAASAF 137 (177)
T ss_dssp TCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHH------HHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHH------HHHHcCcHHHHHHH
Confidence 998887777666666554 66666777889999999999854 333332211 12236778888888
Q ss_pred HHhCC
Q 021583 217 KKKYP 221 (310)
Q Consensus 217 ~~~~~ 221 (310)
.+.+.
T Consensus 138 ~~~~~ 142 (177)
T 3mkq_B 138 LEQAE 142 (177)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 87653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.09 E-value=2 Score=30.08 Aligned_cols=43 Identities=9% Similarity=0.240 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWML 115 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 115 (310)
.+.+..+....+.|++....+.+.+|.+.+++..|.++|+-.+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 30 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5556666677777777777777788777777777777777776
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.02 E-value=3.1 Score=29.09 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=61.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhccCC
Q 021583 172 RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEG 251 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g 251 (310)
...+++|..+-+-+...+. ....--+-+..+...|++++|..+.+..- -||...|-+|-+.+.|
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--------------~pdlepw~ALce~rlG 83 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA--------------YPDLEPWLALCEYRLG 83 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--------------CGGGHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--------------CchHHHHHHHHHHhcc
Confidence 3457888888888777654 22222333455889999999998865422 5788899888888999
Q ss_pred ChhhHHhhhchhhcCCCCC
Q 021583 252 KTNEVETTKNPNESSEEPE 270 (310)
Q Consensus 252 ~~~~a~~~~~~m~~~~~~p 270 (310)
..+.++..+.++..+|-+.
T Consensus 84 l~s~le~rL~~la~sg~p~ 102 (116)
T 2p58_C 84 LGSALESRLNRLARSQDPR 102 (116)
T ss_dssp CHHHHHHHHHHHTTCCCHH
T ss_pred cHHHHHHHHHHHHhCCCHH
Confidence 9999999998888877553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=88.59 E-value=12 Score=32.64 Aligned_cols=137 Identities=12% Similarity=0.008 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-----
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENE-K-DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLD----- 140 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~----- 140 (310)
..+++...++.+...+ +-+..+|+.--..+.+. + ++++++++++.+.+.. .-|-.+|+----.+.+.|..+
T Consensus 104 ~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp CHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchh
Confidence 4667778888887766 45678888888888777 7 8899999999988663 456677766555555555555
Q ss_pred ---HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 021583 141 ---EAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM-------HEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 141 ---~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~-------~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~ 209 (310)
+++++++++.+... .+...|+-.-..+.+.++ ++++++.+....... | |...|+.+-..+.+.|.
T Consensus 182 ~~~eELe~~~k~I~~dp--~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDG--RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 99999999999875 566788888888887776 688888888877643 4 67778776666666655
Q ss_pred H
Q 021583 210 L 210 (310)
Q Consensus 210 ~ 210 (310)
-
T Consensus 258 ~ 258 (349)
T 3q7a_A 258 P 258 (349)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.49 E-value=7.8 Score=37.51 Aligned_cols=128 Identities=10% Similarity=0.001 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhc------CCCCChH--H-
Q 021583 92 KKALKTLENEKD-WKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGR-LDEAEELWTKIFLD------HLEGTPR--I- 160 (310)
Q Consensus 92 ~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~-~~~A~~~~~~m~~~------~~~~~~~--~- 160 (310)
..++..+...++ .+.|..+|+.+.+..-..+......+|..+.+.++ --+|.+++.+..+. ...+.+. .
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444555555666 68899999998876322223333344444444432 23455555544321 1111111 1
Q ss_pred HH---HHHH----HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 021583 161 FF---DKMI----SIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYP 221 (310)
Q Consensus 161 ~y---~~li----~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~ 221 (310)
.. ..|+ ..+...|+++-|+++-..-.. +.|+ -.||-.|..+|...|+++.|+-.++.|.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11 1133 345568999999999988655 5686 5999999999999999999999998764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.12 E-value=5.7 Score=29.04 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCChH-HHHHHHHHHHHHcCCHHHH
Q 021583 103 DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDE---AEELWTKIFLDHLEGTPR-IFFDKMISIYYNRGMHEKM 178 (310)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~-~~y~~li~~~~~~g~~~~a 178 (310)
....+.+-|+.....|. ++..+--.+-.++++.....+ +..+++++.+.+- |... ...=.|--|+.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555444343 666666666667777666544 7777777666542 1112 2333444566777777777
Q ss_pred HHHHHHHHH
Q 021583 179 FEIFADMEE 187 (310)
Q Consensus 179 ~~l~~~m~~ 187 (310)
.+.++.+.+
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777766
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.37 E-value=3 Score=29.09 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhccCC
Q 021583 172 RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEG 251 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g 251 (310)
...+++|..+-+-+...+. ....--+-+..+...|++++|.++.+.. .-||...|-+|-+.+.|
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~--------------c~pdlepw~ALce~rlG 82 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN--------------PWPALEPWFALCEWHLG 82 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC--------------CCGGGHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC--------------CCchHHHHHHHHHHhcc
Confidence 3457888888888777654 2222233345588999999998775431 26888999999888999
Q ss_pred ChhhHHhhhchhhcCCCCC
Q 021583 252 KTNEVETTKNPNESSEEPE 270 (310)
Q Consensus 252 ~~~~a~~~~~~m~~~~~~p 270 (310)
..+.++..+.++..+|-+.
T Consensus 83 l~s~le~rL~~la~sg~p~ 101 (115)
T 2uwj_G 83 LGAALDRRLAGLGGSSDPA 101 (115)
T ss_dssp CHHHHHHHHHHHHTCSSHH
T ss_pred cHHHHHHHHHHHHhCCCHH
Confidence 9999999998988887553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.14 E-value=6 Score=34.92 Aligned_cols=67 Identities=7% Similarity=-0.047 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL-----DHLEGT 157 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~-----~~~~~~ 157 (310)
+...++..+...|+++++...+...... ...+...|..||.+|.+.|+..+|++.|+++.+ .|++|.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4556677788899999999988887654 356788999999999999999999999998765 377543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=85.43 E-value=10 Score=32.21 Aligned_cols=93 Identities=6% Similarity=0.001 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHc-CC
Q 021583 104 WKRIIQVTKWMLSKGQGRT---MGTYFLLLNALAE-----DGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNR-GM 174 (310)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~---~~ty~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~-g~ 174 (310)
...|...+++..+. -|+ -..|..|...|.+ -|+.++|.+.|++-.+.+-. -+..++...-..+|+. |+
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-HDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-TCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHhcCC
Confidence 34566666665544 465 6789999999999 49999999999999987531 1235788888889885 99
Q ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHH
Q 021583 175 HEKMFEIFADMEELGVR--PNVSIVSM 199 (310)
Q Consensus 175 ~~~a~~l~~~m~~~g~~--p~~~ty~~ 199 (310)
.+++.+.+++-.+.... |+....+.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 99999999999987666 77554444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.44 E-value=6.8 Score=29.05 Aligned_cols=44 Identities=9% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWML 115 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 115 (310)
+.+-+..+...++.|++....+.+.+|.+.+++..|.++|+-.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34556666667777777777777777777777777777777766
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=84.38 E-value=8.3 Score=28.84 Aligned_cols=85 Identities=12% Similarity=0.125 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 021583 100 NEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMF 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~ 179 (310)
.+|++.+...-+-.+ ..+...++.-++.+...|.-|+-.++..++..... ++....-.+-++|.+.|+..+|.
T Consensus 73 ~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~--~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 73 KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNE--VSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC--SCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCC--CChHHHHHHHHHHHHhcchhhHH
Confidence 344555444444332 12445667778888888888888888888544322 33445667778888888888888
Q ss_pred HHHHHHHHCCCC
Q 021583 180 EIFADMEELGVR 191 (310)
Q Consensus 180 ~l~~~m~~~g~~ 191 (310)
+++.+..+.|++
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 888888888875
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.35 E-value=8.5 Score=26.97 Aligned_cols=64 Identities=8% Similarity=-0.104 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 103 DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
+.-+..+-++.+....+.|+.....+.|++|-+-+++..|.++|+-.+.+-- ....+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4566777788888888899999999999999999999999999998887643 223357776654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=83.28 E-value=13 Score=28.19 Aligned_cols=113 Identities=11% Similarity=0.038 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHHhcC
Q 021583 87 PLITVKKALKTLENEKDW------KRIIQVTKWMLSKGQGRTM----GTYFLLLN---ALAEDGRLDEAEELWTKIFLDH 153 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~----~ty~~ll~---~~~~~g~~~~A~~~~~~m~~~~ 153 (310)
|..+|-..+...-+.|++ ++.+++|+..... ++|+. ..|.-|.- .+...+++++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 466666667776666777 7777888866543 44531 22222111 112337899999999999876
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 154 LEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 154 ~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
.+.. .-.|-..-..=.+.|+.++|.+++..-...+.+|.. ...+.|..
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~n 137 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALRN 137 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHHh
Confidence 3334 457877778888999999999999998887766533 33444433
|
| >2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A | Back alignment and structure |
|---|
Probab=81.86 E-value=6.8 Score=28.68 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCC
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGR--LDEAEELWTKIFLDHL 154 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~--~~~A~~~~~~m~~~~~ 154 (310)
.+.++.-|...|+.++|.+-++++... ......++..+..++-+.++ .+.+.+++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 345555555556666665555554422 11223444444444444432 2345555555555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=80.62 E-value=18 Score=30.67 Aligned_cols=82 Identities=6% Similarity=-0.118 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 021583 71 EVYGALDSFIAWELEFP---LITVKKALKTLENE-----KDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED-GRLDE 141 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~-g~~~~ 141 (310)
.+..++++..+.. |+ -..|..+-..|.+. |+.++|.+.|++-.+.+-.-+..++...-..++.. |+.++
T Consensus 181 ~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3455555555443 54 56788888889884 99999999999988764222478888889999985 99999
Q ss_pred HHHHHHHHHhcCC
Q 021583 142 AEELWTKIFLDHL 154 (310)
Q Consensus 142 A~~~~~~m~~~~~ 154 (310)
|.+.+++......
T Consensus 259 a~~~L~kAL~a~p 271 (301)
T 3u64_A 259 FDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHCCG
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 310 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.83 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.69 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.46 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.27 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.02 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.0 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.97 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.94 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.9 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.74 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.71 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.7 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.67 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.64 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.59 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.39 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.3 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.27 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.02 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.92 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.83 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.81 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.77 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.61 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 96.39 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.34 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.3 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.26 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.04 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.5 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 95.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 94.79 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.68 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 92.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 92.01 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 91.38 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.83 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 85.0 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 84.52 | |
| d2nsza1 | 129 | Programmed cell death 4, PDCD4 {Mouse (Mus musculu | 82.39 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 81.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 80.87 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=5.3e-07 Score=77.14 Aligned_cols=180 Identities=13% Similarity=0.049 Sum_probs=135.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.+...+++..+.. +-+..++..+...+...|++++|...|+.....+ ..+...+..+...+.+.|++++|.+.|
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 260 (388)
T d1w3ba_ 183 GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555666666665543 3356778888888889999999999998877653 456677888888888999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCC
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPP 223 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~ 223 (310)
++..+.. |.+..+|..+...|...|++++|.+.++...... +.+...+..+...|...|++++|.+.|++. .|+
T Consensus 261 ~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 337 (388)
T d1w3ba_ 261 RRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9888764 2444578888899999999999999988876542 346788888888999999999999998762 222
Q ss_pred ccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 224 KWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
+...+..+-.. ..|++++|.+.++....
T Consensus 338 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 338 --------------FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp --------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23444445444 88999999988877654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=1.8e-06 Score=72.88 Aligned_cols=183 Identities=10% Similarity=0.030 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 021583 70 EEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKI 149 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m 149 (310)
+.+..++++..+...+-+...|...+..+.+.|+++.|..+|+.+.+..-......|..+++.+.+.|+.++|.++|++.
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34567777766655455677888889999999999999999999887644444668999999999999999999999999
Q ss_pred HhcCCCCChHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchh
Q 021583 150 FLDHLEGTPRIFFDKMISI-YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYR 228 (310)
Q Consensus 150 ~~~~~~~~~~~~y~~li~~-~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~ 228 (310)
.+.+- .+...|-..... +...|+.+.|.++|+.+... ..-+...|...++.+.+.|+++.|..+|++..
T Consensus 161 l~~~~--~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai------- 230 (308)
T d2onda1 161 REDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL------- 230 (308)
T ss_dssp HTSTT--CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH-------
T ss_pred HHhCC--CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHH-------
Confidence 87754 232334333332 33468999999999999875 23357889999999999999999999988721
Q ss_pred eeccCccc--CChhhhhHhhhc--cCCChhhHHhhhchhh
Q 021583 229 YIKGKRVR--IPAKPKYELDSA--TEGKTNEVETTKNPNE 264 (310)
Q Consensus 229 ~~~~~~~~--~~~~~~~~li~~--~~g~~~~a~~~~~~m~ 264 (310)
...... .....|...++. ..|+.+.+.++.+++.
T Consensus 231 --~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 231 --TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp --HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred --HhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111111 123467766666 7899999998887663
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.5e-06 Score=74.19 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=123.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+++...+++....+ +.+...+..+...+.+.|++++|.+.|+...+.. +-+..++..+...|...|++++|++.+
T Consensus 217 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~ 294 (388)
T d1w3ba_ 217 RIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44455677777776655 4567778888999999999999999999988653 345788999999999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+......- .+...+..+...|.+.|++++|++.|++..+ +.|+ ..+|..+..+|.+.|++++|...|++
T Consensus 295 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 364 (388)
T d1w3ba_ 295 NTALRLCP--THADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HhhhccCC--ccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99887653 4556899999999999999999999999776 3464 68899999999999999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=6.6e-06 Score=69.20 Aligned_cols=180 Identities=9% Similarity=0.025 Sum_probs=133.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...|++..+.. +-+..+|..+..+|...|++++|...|....+.. +-+...+..+...|...|++++|.+.+
T Consensus 33 g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~ 110 (323)
T d1fcha_ 33 GDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEIL 110 (323)
T ss_dssp TCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccccch
Confidence 44555578888877665 3457788888888899999999999998877552 235677888888888889998888888
Q ss_pred HHHHhcCCC-------------------------------------------------CChHHHHHHHHHHHHHcCCHHH
Q 021583 147 TKIFLDHLE-------------------------------------------------GTPRIFFDKMISIYYNRGMHEK 177 (310)
Q Consensus 147 ~~m~~~~~~-------------------------------------------------~~~~~~y~~li~~~~~~g~~~~ 177 (310)
++.....-. ..+...|..+-..+...|++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 190 (323)
T d1fcha_ 111 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 190 (323)
T ss_dssp HHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhh
Confidence 776543110 1122356677778889999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccchheeccCcccCChhhhhHhhhc--cCC
Q 021583 178 MFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWEYRYIKGKRVRIPAKPKYELDSA--TEG 251 (310)
Q Consensus 178 a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g 251 (310)
|...++...... | +...|..+..+|...|++++|.+.|++. .|+ +...+..+-.. ..|
T Consensus 191 A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~a~~~lg~~~~~~g 254 (323)
T d1fcha_ 191 AVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG--------------YIRSRYNLGISCINLG 254 (323)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHT
T ss_pred hhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhc--------------cHHHHHHHHHHHHHCC
Confidence 999999987643 4 4788999999999999999999998762 222 23445555555 889
Q ss_pred ChhhHHhhhchhh
Q 021583 252 KTNEVETTKNPNE 264 (310)
Q Consensus 252 ~~~~a~~~~~~m~ 264 (310)
++++|.+.+..-.
T Consensus 255 ~~~~A~~~~~~al 267 (323)
T d1fcha_ 255 AHREAVEHFLEAL 267 (323)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999986554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=2e-05 Score=66.02 Aligned_cols=148 Identities=13% Similarity=0.066 Sum_probs=116.4
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------------
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG---------------------------- 118 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------------------------- 118 (310)
+..+.|...+++..+.. +-+...+..+...|...|++++|.+.++......
T Consensus 67 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (323)
T d1fcha_ 67 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 145 (323)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred CChHHHHHHHHhhhccc-cccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHH
Confidence 44555567776666544 2356777788888888888888888877654321
Q ss_pred ----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHH
Q 021583 119 ----------------------QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHE 176 (310)
Q Consensus 119 ----------------------~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~ 176 (310)
-..+...+..+-..+...|++++|...|++.....- .+...|..+-..|.+.|+++
T Consensus 146 ~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~ 223 (323)
T d1fcha_ 146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP--NDYLLWNKLGATLANGNQSE 223 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc--ccccchhhhhhcccccccch
Confidence 123456777788889999999999999999887643 44568999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 177 KMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 177 ~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+|.+.|+...+. .| +...|..+..+|.+.|++++|.+.|++
T Consensus 224 ~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 265 (323)
T d1fcha_ 224 EAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLE 265 (323)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998764 45 467899999999999999999999976
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.27 E-value=5.4e-05 Score=63.49 Aligned_cols=150 Identities=13% Similarity=0.023 Sum_probs=117.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNA-LAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~-~~~~g~~~~A~~~ 145 (310)
+..+.+..+++++.+.........|...+..+.+.|+++.|.++|+...+.+- .+...|...... +...|+.+.|..+
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHH
Confidence 45677788888887765444466799999999999999999999999886642 233344333333 3456899999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL-GVRPN--VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~--~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|+.+.+.. |.+...|...+..+.+.|++++|..+|++.... +..|+ ...|...+.--...|+.+.+.+++++
T Consensus 192 ~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 192 FELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999874 244568999999999999999999999998765 35554 46788888888889999999999876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.02 E-value=6.2e-05 Score=58.38 Aligned_cols=99 Identities=5% Similarity=-0.127 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
|+...+...-+.|.+.|++++|...|+...+.. +-+...|..+-.+|.+.|++++|...|++..+.. |.+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHH
Confidence 666777777788888889999998888877553 4567788888888888889999988888887653 3444578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~ 187 (310)
-.+|.+.|++++|+..|+...+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888887654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.00 E-value=0.0001 Score=57.08 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 021583 120 GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVS 198 (310)
Q Consensus 120 ~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~ 198 (310)
.|+...+...-+.|.+.|++++|+..|.+..+.. |.+...|+.+-.+|.+.|++++|+..|+...+ +.|+ ..+|.
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~ 76 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHF 76 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHH
Confidence 3677778888899999999999999999988775 45667899999999999999999999999775 4574 78899
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 021583 199 MMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 199 ~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+..+|...|++++|...|++
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQR 97 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999985
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.97 E-value=0.00015 Score=60.14 Aligned_cols=170 Identities=12% Similarity=-0.055 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CCCCC
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQG-RTMGTYFLLLNALAE-DGRLDEAEELWTKIFLD----HLEGT 157 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~ty~~ll~~~~~-~g~~~~A~~~~~~m~~~----~~~~~ 157 (310)
..+|+.+-.+|.+.|++++|.+.++...+. |.. ....++..+...|-. .|++++|.+.+++..+. +. +.
T Consensus 77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-~~ 155 (290)
T d1qqea_ 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VA 155 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-hh
Confidence 357899999999999999999999975432 211 114556666666754 59999999999876543 21 11
Q ss_pred h-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchhee
Q 021583 158 P-RIFFDKMISIYYNRGMHEKMFEIFADMEELGVR-----PNV-SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYI 230 (310)
Q Consensus 158 ~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~-----p~~-~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~ 230 (310)
. ..+|..+...|...|++++|.+.|++.....-. ... ..|..++.++...|+.+.|.+.+++...-...+..
T Consensus 156 ~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~- 234 (290)
T d1qqea_ 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD- 234 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred hhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc-
Confidence 1 237899999999999999999999998764211 111 23455566778899999999999874322111211
Q ss_pred ccCcccCChhhhhHhhhc-cCC---ChhhHHhhhchhh
Q 021583 231 KGKRVRIPAKPKYELDSA-TEG---KTNEVETTKNPNE 264 (310)
Q Consensus 231 ~~~~~~~~~~~~~~li~~-~~g---~~~~a~~~~~~m~ 264 (310)
.........|+++ ..+ .+++|...++.+.
T Consensus 235 -----sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 235 -----SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred -----hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1122344556666 333 4666666665443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00016 Score=51.28 Aligned_cols=95 Identities=11% Similarity=-0.100 Sum_probs=68.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM 174 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~ 174 (310)
-+.+.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|++.+.+..+..- .+...|..+-.+|...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc--chhhHHHHHHHHHHHccC
Confidence 455667788888888888877552 44567777788888888888888888887777653 444577788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 021583 175 HEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 175 ~~~a~~l~~~m~~~g~~p~~ 194 (310)
+++|+..|+...+ ..|+.
T Consensus 87 ~~~A~~~~~~a~~--~~p~~ 104 (117)
T d1elwa_ 87 FEEAKRTYEEGLK--HEANN 104 (117)
T ss_dssp HHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHHHHHHHHH--hCCCC
Confidence 8888888887765 34543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.0002 Score=55.61 Aligned_cols=122 Identities=12% Similarity=0.065 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY 170 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~ 170 (310)
|+. -..+...|+++.|.+.|..+ ..|+..+|..+-..|...|++++|++.|++..+..- .....|..+-.+|.
T Consensus 9 ~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp--~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 9 WNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYY 81 (192)
T ss_dssp HHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh--hhhhhHHHHHHHHH
Confidence 443 34457789999999999764 357888899999999999999999999999998753 44568999999999
Q ss_pred HcCCHHHHHHHHHHHHHCC------------C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 171 NRGMHEKMFEIFADMEELG------------V--RPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g------------~--~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+.|++++|.+.|+.-.... . .++ ..++..+-.+|.+.|++++|.+.++.
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~ 145 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 145 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999998875421 1 112 35566778889999999999998764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.00045 Score=51.63 Aligned_cols=121 Identities=9% Similarity=-0.047 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY 170 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~ 170 (310)
+...-+.|.+.|++++|...|+...+.. +-+...|..+-..|...|++++|.+.|++..+..- .+..+|..+..+|.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p--~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc--cchHHHHHHHHHHH
Confidence 3344567789999999999999988764 45788999999999999999999999999998753 45568999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH--HHhcCCHHHHHHH
Q 021583 171 NRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNA--FQKLGMLDKYEKL 216 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~--~~~~g~~~~a~~l 216 (310)
..|++++|.+.+++.... .|+ ...+..+-.+ +...+.++++...
T Consensus 90 ~~g~~~eA~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998875 354 4444444333 3334445555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=0.00047 Score=55.31 Aligned_cols=149 Identities=11% Similarity=-0.039 Sum_probs=99.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...|++..+.. +-+..+|+.+-.+|.+.|++++|.+.|+...+.. +-+..++..+-..|...|++++|.+.|
T Consensus 51 g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 128 (259)
T d1xnfa_ 51 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDL 128 (259)
T ss_dssp TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence 34444477777776654 3467889999999999999999999999988653 234678888889999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----------------------------------CCC
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELG----------------------------------VRP 192 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g----------------------------------~~p 192 (310)
++..+..- .+...+..+..++.+.+..+.+..+........ ..|
T Consensus 129 ~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (259)
T d1xnfa_ 129 LAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206 (259)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHhhcc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 99887653 233333333333344444333333333222211 112
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 193 N-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 193 ~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+ ..+|..|-..|...|++++|.+.|++
T Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 234 (259)
T d1xnfa_ 207 HLSETNFYLGKYYLSLGDLDSATALFKL 234 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 13455677888889999999999876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00059 Score=57.19 Aligned_cols=148 Identities=7% Similarity=-0.020 Sum_probs=119.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEK-DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..++|...+++..+.+ +-+..+|+..-.++...| ++++|++.++...+.. +-+..+|..+-..+.+.|+.++|++.
T Consensus 57 e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~ 134 (315)
T d2h6fa1 57 ERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEF 134 (315)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHHH
Confidence 44566688888888876 456778888888888876 5999999999987663 44689999999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHh
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM------LDKYEKLKKK 219 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~------~~~a~~l~~~ 219 (310)
++++.+.. |.+...|+.+...+.+.|++++|.+.++...+... -+...|+.+...+.+.+. +++|...+.+
T Consensus 135 ~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~ 211 (315)
T d2h6fa1 135 IADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 211 (315)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred Hhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHH
Confidence 99999875 35667999999999999999999999999988542 257788877777776665 4667766654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.00015 Score=51.43 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=77.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 021583 129 LLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208 (310)
Q Consensus 129 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 208 (310)
--+.+.+.|++++|+.+|++..+.. |.+...|..+-.+|...|++++|+..+....+.. +-+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 3567889999999999999999875 3555689999999999999999999999998754 236789999999999999
Q ss_pred CHHHHHHHHHh
Q 021583 209 MLDKYEKLKKK 219 (310)
Q Consensus 209 ~~~~a~~l~~~ 219 (310)
++++|...|++
T Consensus 86 ~~~~A~~~~~~ 96 (117)
T d1elwa_ 86 RFEEAKRTYEE 96 (117)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999986
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.84 E-value=0.00021 Score=59.19 Aligned_cols=173 Identities=9% Similarity=-0.088 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCh--H
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE--GTP--R 159 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~--~ 159 (310)
..|..+.+.|...|++++|.+.|....+. +-.++ ..+|..+-..|.+.|++++|.+.+++..+.... ..+ .
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 35777788899999999999999987543 22222 468899999999999999999999876543111 011 1
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccchhee
Q 021583 160 IFFDKMISIYYN-RGMHEKMFEIFADMEE----LGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWEYRYI 230 (310)
Q Consensus 160 ~~y~~li~~~~~-~g~~~~a~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~ 230 (310)
.++..+...|-. .|++++|.+.+....+ .+-.+. ..+|..+...|...|++++|...|++. .+.......
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~- 196 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW- 196 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG-
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh-
Confidence 367777777754 6999999999988653 233332 367888999999999999999999862 222111110
Q ss_pred ccCcccCChhhhhHhhhc-cCCChhhHHhhhchhhcCC
Q 021583 231 KGKRVRIPAKPKYELDSA-TEGKTNEVETTKNPNESSE 267 (310)
Q Consensus 231 ~~~~~~~~~~~~~~li~~-~~g~~~~a~~~~~~m~~~~ 267 (310)
.......+..+-. ..|+...|.+.++......
T Consensus 197 -----~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 197 -----SLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp -----GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred -----hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1111222222222 7899999999988876544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=0.00098 Score=53.31 Aligned_cols=125 Identities=14% Similarity=-0.079 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
..|..+-..|.+.|++++|.+.|+...+.. +-+..+|..+-..|.+.|++++|.+.|++..+..- .+..+|..+-..
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh--hhhhhHHHHHHH
Confidence 467777889999999999999999988652 34678999999999999999999999999998753 344588999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
|...|++++|.+.|+...+.. +.+......+..++.+.+..+.+..+.
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLK 162 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999987653 224444444445555666555544443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00088 Score=51.82 Aligned_cols=119 Identities=10% Similarity=0.001 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
.+.|.+.+.++ .+|+...|..+-.+|.+.|++++|.+.|+...+.. +-+...|..+-..|.+.|+.++|.+.|++
T Consensus 21 ~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~k 95 (192)
T d1hh8a_ 21 WKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKE 95 (192)
T ss_dssp HHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence 33445555432 35778889999999999999999999999988764 45688999999999999999999999998
Q ss_pred HHhcC------------CC-CC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 021583 149 IFLDH------------LE-GT-PRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 192 (310)
Q Consensus 149 m~~~~------------~~-~~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 192 (310)
..... .. .. ...++..+-.+|.+.|++++|.+.+....+....+
T Consensus 96 Al~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 96 ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 76421 10 01 12356677788999999999999998876654443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00048 Score=57.80 Aligned_cols=126 Identities=11% Similarity=0.028 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDG-RLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..|+.+-..+.+.+.+++|+++++...+.. +-+..+|+..-..+...| ++++|++.+++..+..- .+..+|+.+-.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p--~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH--hhhhHHHHHhH
Confidence 456666667788899999999999999763 335667888888888876 59999999999988753 45568999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.+.|++++|++.++.+.+. .| +...|..+...+...|++++|.+.+++
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~ 171 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 171 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999874 45 589999999999999999999999986
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.00054 Score=51.14 Aligned_cols=87 Identities=9% Similarity=0.017 Sum_probs=77.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 021583 129 LLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKL 207 (310)
Q Consensus 129 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~ 207 (310)
.-+.|.+.|++++|+..|.+..+.. |.+...|..+-..|...|++++|...|+...+.. | +...|..+..+|...
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHc
Confidence 4567889999999999999999875 3556799999999999999999999999998753 5 568999999999999
Q ss_pred CCHHHHHHHHHh
Q 021583 208 GMLDKYEKLKKK 219 (310)
Q Consensus 208 g~~~~a~~l~~~ 219 (310)
|++++|...+++
T Consensus 92 g~~~eA~~~~~~ 103 (159)
T d1a17a_ 92 GKFRAALRDYET 103 (159)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00022 Score=51.11 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=72.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCh-HHHHHHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGR---LDEAEELWTKIFLDHLEGTP-RIFFDKMIS 167 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~---~~~A~~~~~~m~~~~~~~~~-~~~y~~li~ 167 (310)
..+++.+...+++++|.+.|+.....+ +.+..++..+-.++.+.++ .++|.++|++..+..-. ++ ..+|..|-.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~-~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-EEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-HHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 456778888888888888888877653 4567778888888876554 45688888887765431 22 126777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
+|.+.|++++|.+.|+...+ +.|+-
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~--~~P~~ 105 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQ--TEPQN 105 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHhhhHHHHHHHHHHHH--hCcCC
Confidence 88888888888888888877 35654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.64 E-value=0.00034 Score=49.15 Aligned_cols=82 Identities=6% Similarity=0.004 Sum_probs=37.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 021583 133 LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~ 211 (310)
+.+.|++++|...|++..+.. |.+...|..+-..|.+.|++++|+..|+...+. .| +...|..+..+|...|+.+
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCCCHH
Confidence 344455555555555444432 122234444444555555555555555444432 22 2344444555555555555
Q ss_pred HHHHHHH
Q 021583 212 KYEKLKK 218 (310)
Q Consensus 212 ~a~~l~~ 218 (310)
+|.+.++
T Consensus 102 ~A~~~l~ 108 (112)
T d1hxia_ 102 AALASLR 108 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=0.00087 Score=51.33 Aligned_cols=100 Identities=12% Similarity=0.172 Sum_probs=79.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCC-C------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSK--GQG-R------------------TMGTYFLLLNALAEDGRLDEAEELWTKIFLDH 153 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~--g~~-p------------------~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~ 153 (310)
-......|++++|.+.|..-... |-. + -...+..+...+.+.|++++|...++++.+..
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 97 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 97 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC
Confidence 34667788888888888886643 211 1 12466788999999999999999999998875
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 021583 154 LEGTPRIFFDKMISIYYNRGMHEKMFEIFADME-----ELGVRPNVSI 196 (310)
Q Consensus 154 ~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~-----~~g~~p~~~t 196 (310)
|.+...|..++.+|.+.|+.++|++.|+++. +-|+.|...+
T Consensus 98 --P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 98 --PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp --TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred --CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 4667799999999999999999999999974 3599998765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.64 E-value=0.00034 Score=49.12 Aligned_cols=89 Identities=7% Similarity=-0.133 Sum_probs=76.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g 173 (310)
+-..+.+.|++++|...|+...... +-+..+|..+-..+.+.|++++|+..|++..+.. |.+...|..+-..|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCC
Confidence 4456788999999999999988663 3368999999999999999999999999988875 345568999999999999
Q ss_pred CHHHHHHHHHHH
Q 021583 174 MHEKMFEIFADM 185 (310)
Q Consensus 174 ~~~~a~~l~~~m 185 (310)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00013 Score=52.45 Aligned_cols=91 Identities=12% Similarity=-0.003 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM---HEKMFEIFADMEELGVRPNV-SIVSMMGN 202 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~~-~ty~~li~ 202 (310)
..+++.+...+++++|++.|++....+- .+..++..+-.++.+.++ +++|+++++...+..-.|+. .+|..|-.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p--~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 5688999999999999999999998763 555688888888887555 45699999998765544442 47888999
Q ss_pred HHHhcCCHHHHHHHHHh
Q 021583 203 AFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 203 ~~~~~g~~~~a~~l~~~ 219 (310)
+|.+.|++++|.+.|++
T Consensus 81 ~y~~~g~~~~A~~~~~~ 97 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRG 97 (122)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 99999999999999986
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.0026 Score=52.44 Aligned_cols=153 Identities=8% Similarity=-0.002 Sum_probs=109.1
Q ss_pred CcHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhc
Q 021583 67 NVKEEVYGALDSFIAW----ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK--GQGRT----MGTYFLLLNALAED 136 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~----~~ty~~ll~~~~~~ 136 (310)
+..+.+...+...... +......++......+...+++..+...+...... ..... ...+..+...+...
T Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 3344445555554432 33334566777788888899999999888875532 11111 24456677788899
Q ss_pred CCHHHHHHHHHHHHhcCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC
Q 021583 137 GRLDEAEELWTKIFLDHLEGTP--RIFFDKMISIYYNRGMHEKMFEIFADMEE----LGVRPN-VSIVSMMGNAFQKLGM 209 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~~~~~~~--~~~y~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~ 209 (310)
|+.++|...+++..+......+ ...+..+...|...|++++|.+.++.... .+..|+ ...+..+-.+|...|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 9999999999987765432222 23677788999999999999999988753 355554 3678888999999999
Q ss_pred HHHHHHHHHh
Q 021583 210 LDKYEKLKKK 219 (310)
Q Consensus 210 ~~~a~~l~~~ 219 (310)
+++|.+.+++
T Consensus 307 ~~~A~~~l~~ 316 (366)
T d1hz4a_ 307 KSDAQRVLLD 316 (366)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.0044 Score=46.58 Aligned_cols=115 Identities=14% Similarity=0.022 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGR-------------TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p-------------~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
..+...-+.+.+.|++++|.+.|...... ...+ -..+|+.+-..|.+.|++++|+..+++..+..
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 34455566788999999999999887643 1111 13567778888899999999999999988874
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 021583 155 EGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKL 207 (310)
Q Consensus 155 ~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~ 207 (310)
|.+..+|..+-.+|...|++++|...|+...+. .| |......+-.+.-+.
T Consensus 93 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 93 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHH
T ss_pred -ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 345568999999999999999999999998774 45 445444444444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.0018 Score=46.39 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCC--C-HHHHHH
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL---GVRP--N-VSIVSM 199 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p--~-~~ty~~ 199 (310)
+-.+-+.|.+.|++++|++.|.+..+.+ |.+...|..+-.+|.+.|++++|.+.++...+. ...+ . ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3445567778888888888888877764 344567888888888888888888888776542 1111 1 246777
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 021583 200 MGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 200 li~~~~~~g~~~~a~~l~~~ 219 (310)
+-..+...+++++|...|++
T Consensus 85 lg~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 77778888888888888754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.27 E-value=0.01 Score=43.56 Aligned_cols=95 Identities=12% Similarity=-0.023 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQ----GRT-----------MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE 155 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p~-----------~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 155 (310)
+..--+.+.+.|++.+|...|......-. .++ ..+|+.+...|.+.|++++|++.+++..+.+
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-- 97 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-- 97 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc--
Confidence 33344567788999999999988664311 111 2456667777777777777777777776654
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 156 GTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 156 ~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
|.+..+|..+-.+|...|++++|...|+...+
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445777777777777777777777777665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.10 E-value=0.008 Score=44.89 Aligned_cols=112 Identities=10% Similarity=0.041 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--------------CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSK--------------GQG-RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE 155 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~--------------g~~-p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 155 (310)
+...-..+.+.|+++.|.+.|.+..+. .+. .+...|..+-..|.+.|++++|+..+++..+..
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-- 107 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 107 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh--
Confidence 344555677888888888888765421 111 234566777778888888888888888888754
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 021583 156 GTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQK 206 (310)
Q Consensus 156 ~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~ 206 (310)
|.+...|..+-.+|.+.|++++|.+.|+...+. .| +...+..+..+..+
T Consensus 108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQK 157 (169)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 345568888888888888888888888887763 34 44555555544433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.009 Score=42.45 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCChH--HHHHHH
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL---EGTPR--IFFDKM 165 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~--~~y~~l 165 (310)
+..+=..|.+.|++++|.+.|....+.+ +.+..+|..+-.+|.+.|++++|++.+++..+..- ..... .+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4455667889999999999999988763 45689999999999999999999999999776421 11111 267777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 021583 166 ISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
-..+...+++++|.+.|+.-...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 78888899999999999886653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.011 Score=44.33 Aligned_cols=93 Identities=13% Similarity=-0.063 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEG-------------TPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVR 191 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-------------~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 191 (310)
.+...-+.+.+.|++++|...|.+..+.--.. .-..+|+.+-.+|.+.|++++|+..++...+. .
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~--~ 92 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--D 92 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--c
Confidence 34455668899999999999998877542110 01136888899999999999999999998875 3
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 192 P-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 192 p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
| +...|..+..+|...|++++|...|++
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 121 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQK 121 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 5 689999999999999999999999876
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.072 Score=43.08 Aligned_cols=156 Identities=12% Similarity=0.009 Sum_probs=109.4
Q ss_pred hcCCcHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHH
Q 021583 64 GLSNVKEEVYGALDSFIAWELEFP----LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGR-TMGTYFLLLNALA 134 (310)
Q Consensus 64 ~~~~~~~~~~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~ 134 (310)
...+..++|...+++..+..-..+ ...++.+-..|...|++++|.+.|++.... +..+ ...++..+...+.
T Consensus 23 ~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (366)
T d1hz4a_ 23 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 102 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 344566667888887766431111 346777888999999999999999987632 1111 2356677788889
Q ss_pred hcCCHHHHHHHHHHHHhc----CCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHH
Q 021583 135 EDGRLDEAEELWTKIFLD----HLEGTPR--IFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPNVSIVSMMGNAF 204 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~----~~~~~~~--~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~~~ty~~li~~~ 204 (310)
..|++.+|...+.+.... .....+. ..+..+-..+...|+++.+...+...... +.......+..+...+
T Consensus 103 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (366)
T d1hz4a_ 103 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 999999999988876532 2211222 25667778889999999999999887653 2223356677777888
Q ss_pred HhcCCHHHHHHHHHh
Q 021583 205 QKLGMLDKYEKLKKK 219 (310)
Q Consensus 205 ~~~g~~~~a~~l~~~ 219 (310)
...+..+++...+.+
T Consensus 183 ~~~~~~~~a~~~~~~ 197 (366)
T d1hz4a_ 183 LARGDLDNARSQLNR 197 (366)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHH
Confidence 889999998887754
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.83 E-value=0.015 Score=42.64 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=66.2
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCCC----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 021583 124 GTYFLL--LNALAEDGRLDEAEELWTKIFLDHLEGT----------PRIFFDKMISIYYNRGMHEKMFEIFADMEEL--- 188 (310)
Q Consensus 124 ~ty~~l--l~~~~~~g~~~~A~~~~~~m~~~~~~~~----------~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~--- 188 (310)
.+|..+ ...+...|++++|++.|++..+..-..+ ...+|+.+-.+|.+.|++++|.+-+++..+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345555 4455566888888888877765422111 1247888888899999999998888876531
Q ss_pred --CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 189 --GVRPN-----VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 189 --g~~p~-----~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
...++ ...|..+-.+|...|++++|...|++
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 22222 23567788899999999999999865
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.81 E-value=0.02 Score=41.98 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---C-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 021583 128 LLLNALAEDGRLDEAEELWTKIFLDHLEG---T-----------PRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN 193 (310)
Q Consensus 128 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~---~-----------~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 193 (310)
.--+.+.+.|++++|...|.+..+.-... . ...+|+.+-.+|.+.|++++|++.+....+.. +-+
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~ 100 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNN 100 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-chh
Confidence 34467788999999999999877532110 0 11368889999999999999999999988753 236
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 194 VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 194 ~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..+|..+..+|...|++++|...|++
T Consensus 101 ~ka~~~~g~~~~~lg~~~~A~~~~~~ 126 (153)
T d2fbna1 101 VKALYKLGVANMYFGFLEEAKENLYK 126 (153)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.77 E-value=0.0016 Score=53.09 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=79.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHH
Q 021583 98 LENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEK 177 (310)
Q Consensus 98 ~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~ 177 (310)
..+.|++++|...+++..+.. +-|...+..|...|+..|++++|.+.|+...+.. |.....+..+-..+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHH
Confidence 456799999999999988762 5578999999999999999999999999998874 2333455555554443333332
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 178 MFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 178 a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+..-...-...+ .|+ ...+......+...|+.++|..++++
T Consensus 83 a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~ 124 (264)
T d1zbpa1 83 FAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQ 124 (264)
T ss_dssp HTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 221111100011 132 34455556678889999999999875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.61 E-value=0.03 Score=41.54 Aligned_cols=118 Identities=11% Similarity=-0.050 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSK---GQGR-----------TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p-----------~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
..+.-.-+.+.+.|++.+|...|...... .... ....|+.+-.+|.+.|++++|+..+++..+..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~- 94 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 94 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence 34555667788899999999999875521 1111 12446667778889999999999999988864
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 021583 155 EGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGML 210 (310)
Q Consensus 155 ~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~ 210 (310)
|.+..+|..+-.+|...|++++|.+.|....+. .|+ ......+-.+..+.+..
T Consensus 95 -p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~~~ 148 (168)
T d1kt1a1 95 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQKKAKEH 148 (168)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhH
Confidence 355568999999999999999999999998874 454 44555444444444333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.39 E-value=0.0023 Score=53.55 Aligned_cols=106 Identities=10% Similarity=0.025 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEK--DWKRIIQVTKWMLSKGQGRTMGTYFL-LLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~ty~~-ll~~~~~~g~~~~A~~~~~ 147 (310)
.+...++...+.+ +-+...|..+..++...+ ++++|...++...+.. .++...+.. +-..+...+..++|++.++
T Consensus 91 ~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~ 168 (334)
T d1dcea1 91 AELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (334)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHH
Confidence 4466666666544 446677777777776665 4889999999988663 345555544 4467777899999999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~ 180 (310)
+..+.+- .+...|+.+-..+.+.|+.++|..
T Consensus 169 ~~i~~~p--~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 169 SLITRNF--SNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp TTTTTTC--CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred HHHHcCC--CCHHHHHHHHHHHHHhcCHHHHHH
Confidence 9888764 455688888888888888776543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.34 E-value=0.026 Score=41.93 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--------------CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLD--------------HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 192 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~--------------~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 192 (310)
...-+.+.+.|++++|++.|.+..+. .+.+.....|+.+-.+|.+.|++++|+..++...+. .|
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p 108 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DP 108 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--hh
Confidence 44566678889999998888776531 111122236888889999999999999999998874 35
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 193 -NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 193 -~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+...|..+..+|...|++++|.+.|++
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~ 136 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKK 136 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHH
Confidence 578999999999999999999999876
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.30 E-value=0.024 Score=42.80 Aligned_cols=69 Identities=7% Similarity=-0.023 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL-----DHLEGT 157 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~-----~~~~~~ 157 (310)
...+..+...+.+.|++++|...++..... -.-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|.
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 357888999999999999999999998876 256889999999999999999999999999754 588643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.26 E-value=0.052 Score=39.60 Aligned_cols=98 Identities=11% Similarity=-0.087 Sum_probs=72.8
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 021583 89 ITVKKA--LKTLENEKDWKRIIQVTKWMLSKG-QGRT----------MGTYFLLLNALAEDGRLDEAEELWTKIFLD--- 152 (310)
Q Consensus 89 ~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~g-~~p~----------~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~--- 152 (310)
.+|..+ ...+.+.|++++|...|++..+.. --|+ ..+|+.+-.+|.+.|++++|.+.+++..+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 355555 555678899999999999976421 1122 468999999999999999999999887643
Q ss_pred --CCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 153 --HLEGTP----RIFFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 153 --~~~~~~----~~~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
...+.. ...|+.+-.+|...|++++|.+.|+...
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1257778899999999999999999865
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.04 E-value=0.04 Score=40.83 Aligned_cols=95 Identities=14% Similarity=-0.047 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLD---HLEG----------TPRIFFDKMISIYYNRGMHEKMFEIFADMEELGV 190 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~---~~~~----------~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~ 190 (310)
..+.-.-+.+.+.|++++|...|++.... .... .....|+.+-.+|.+.|++++|+..++......
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~- 94 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 94 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence 34455667889999999999999876532 1100 111357778888999999999999999988743
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 191 RPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 191 ~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+-+...|..+..+|...|++++|...|++
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~ 123 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEK 123 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33679999999999999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.59 E-value=0.023 Score=45.90 Aligned_cols=115 Identities=10% Similarity=-0.093 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
..+.+...+++..+.. +-|...+..+...|+..|++++|...|+...+. .|+ ...+..+...+...+..+++..-.
T Consensus 11 ~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~~~~ 87 (264)
T d1zbpa1 11 QLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFAQGA 87 (264)
T ss_dssp CHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHHHHHh
Confidence 3444577777777766 567899999999999999999999999998765 354 344444444443333333322211
Q ss_pred HHHHhcCC-CCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 147 TKIFLDHL-EGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 147 ~~m~~~~~-~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
..... .+++ ...+......+.+.|+.++|.+++++..+.
T Consensus 88 ---~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 88 ---ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp ---CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---hhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11111 1122 235555667788899999999999998764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.14 Score=33.78 Aligned_cols=63 Identities=19% Similarity=0.037 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSK-----GQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDH 153 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~ 153 (310)
+-.+-..+.+.|+++.|...|++..+. ...++ ..+++.|-.+|.+.|++++|.+.+++..+..
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 334555666666777776666654422 11122 3456666666666666666666666666553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.05 E-value=0.37 Score=39.25 Aligned_cols=141 Identities=10% Similarity=-0.043 Sum_probs=97.4
Q ss_pred CcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 67 NVKEEVYGALDSFIAWELEFP-LITVKKALKT----------LENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE 135 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~-~~~~~~li~~----------~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~ 135 (310)
+..+++..++++..+.+ |+ ...|+..-.. +...|++++|+.+++...+.. +-+...|..+..++..
T Consensus 43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 34466777888777655 44 3444433222 233455788999999987653 4456677777777766
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 136 DG--RLDEAEELWTKIFLDHLEGTPRIFFDK-MISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 136 ~g--~~~~A~~~~~~m~~~~~~~~~~~~y~~-li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 212 (310)
.+ ++++|...+.+..+..- .+...|.. .-..+...+..++|.+.++...+... -+...|+.+...+.+.|+.++
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC
T ss_pred hccccHHHHHHHHHHHHhhCc--hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHH
Confidence 65 58999999999988754 34444544 44666778999999999988776542 257888888888888888765
Q ss_pred H
Q 021583 213 Y 213 (310)
Q Consensus 213 a 213 (310)
|
T Consensus 197 A 197 (334)
T d1dcea1 197 S 197 (334)
T ss_dssp S
T ss_pred H
Confidence 5
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.79 E-value=0.078 Score=38.23 Aligned_cols=101 Identities=10% Similarity=-0.034 Sum_probs=61.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED----------GRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
-+.+.+++|.+.|+...+.. +-+..++..+-.+|... +.+++|.+.|++..+.. |.+..+|+.+-.+
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHH
Confidence 44556777777777766553 34555666665555532 44567888888877664 3444577777777
Q ss_pred HHHcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 021583 169 YYNRGM-----------HEKMFEIFADMEELGVRPNVSIVSMMGNAF 204 (310)
Q Consensus 169 ~~~~g~-----------~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 204 (310)
|...|+ +++|.+.|+...+ +.|+-.+|..-+..+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH
Confidence 766543 4666666666554 457665555544444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.68 E-value=0.19 Score=33.00 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDH----LEGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VS 195 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ 195 (310)
+...+-.+-..+.+.|+.++|...|++..+.. ...++ ..+++.|-.+|.+.|++++|.+.+++..+. .|+ ..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHH
Confidence 34444567788899999999999998776541 11122 247999999999999999999999998874 465 45
Q ss_pred HHHHH
Q 021583 196 IVSMM 200 (310)
Q Consensus 196 ty~~l 200 (310)
+++.+
T Consensus 82 a~~Nl 86 (95)
T d1tjca_ 82 ANGNL 86 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.96 E-value=1 Score=31.87 Aligned_cols=109 Identities=10% Similarity=0.043 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENE----------KDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGR-- 138 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~-- 138 (310)
+|...++...+.. +-+..++..+-.+|... +.+++|...|+...+.. +-+..+|..+-.+|...|+
T Consensus 15 ~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~ 92 (145)
T d1zu2a1 15 QIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLT 92 (145)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccch
Confidence 3467777776666 55677777777777643 45678999999887653 3457888888888876553
Q ss_pred ---------HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 021583 139 ---------LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGV 190 (310)
Q Consensus 139 ---------~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~ 190 (310)
+++|.+.|++..+.. |+...|..-+.-+ .+|.+++.+..+.|+
T Consensus 93 ~~~~~~~~~~~~A~~~~~kal~l~---P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 93 PDETEAKHNFDLATQFFQQAVDEQ---PDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hhHHHHHHhHHHhhhhhhcccccC---CCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 588999999888764 3334444444433 357777777766653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.24 Score=43.39 Aligned_cols=112 Identities=9% Similarity=-0.002 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
..+..+-..+.+.|+.+.|...+....... | ..++..|-..+...|++++|...|++..+.. |.+...|+.|-..
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAIL 195 (497)
T ss_dssp ----------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHH
Confidence 344444555555555555555544433211 1 2455666677777777777777777777653 2344577777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 206 (310)
|...|+..+|...|.+-.... .|...++..|...|.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 777777777777777665433 3456666666666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.37 Score=42.06 Aligned_cols=110 Identities=6% Similarity=-0.136 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 021583 102 KDWKRIIQVTKWMLSKGQG-RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180 (310)
Q Consensus 102 ~~~~~a~~~~~~m~~~g~~-p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~ 180 (310)
+.++.+...+.... ++. ++...+..+-..+.+.|+.++|...+++..+.. +..++..|-..+...|++++|..
T Consensus 100 ~~Y~~ai~~l~~~~--~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 100 GFYTQLLQELCTVF--NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI----CQHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHTC---------------------------------CCHHHHHH----HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHcccHHHHHH
Confidence 44455544443322 223 345677778888889999999998887665432 23477788889999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 181 IFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 181 l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|.+..+. .|+ ...|+.|-..|...|+..+|...|.+
T Consensus 174 ~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r 211 (497)
T d1ya0a1 174 YYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99997763 575 58999999999999999999999876
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.83 E-value=1.1 Score=29.59 Aligned_cols=58 Identities=12% Similarity=0.277 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLL 130 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll 130 (310)
+.+.+..+....+.|++....+.+.+|.+.+++..|.++|+-.+.+. .++...|.-++
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 35666677778888888888888888888888888888888777332 22334454443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=85.00 E-value=4.2 Score=27.72 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHHC
Q 021583 174 MHEKMFEIFADMEEL 188 (310)
Q Consensus 174 ~~~~a~~l~~~m~~~ 188 (310)
+.++|.++|+.-.+.
T Consensus 74 d~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 74 DLRKAAQYYSKACGL 88 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhhhhcc
Confidence 344444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=84.52 E-value=4 Score=28.28 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVR 191 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 191 (310)
+..-++.-++.+.++|+-++-.+++.++.+.+- ++....-.+-++|-+-|...++-+++.+..+.|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~--i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNNE--VSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 335556677888888888888888888766554 44455667778888888888888888888887765
|
| >d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: MIF4G domain-like domain: Programmed cell death 4, PDCD4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.39 E-value=2.8 Score=29.01 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-H-HHHHHHHHHhcCC
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLD-E-AEELWTKIFLDHL 154 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~-~-A~~~~~~m~~~~~ 154 (310)
...++.-|...++.++|..-++++.... .....++..+..++-+.++-. + +..++..+...|+
T Consensus 10 ~~~ll~EY~~~~D~~Ea~~~l~eL~~p~-~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~ 74 (129)
T d2nsza1 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCch-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCC
Confidence 4555666666666666666666554221 112344444444444444332 2 3445666665554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.21 E-value=6.9 Score=31.80 Aligned_cols=115 Identities=13% Similarity=0.184 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY 170 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~ 170 (310)
|..++..|.+.+++..|.+++... -+..+|..+...+.+.....-|. +...... .....-..++..|-
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la~-----i~~~~~~-~~~d~l~~~v~~ye 110 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ-----MCGLHIV-VHADELEELINYYQ 110 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH-----HTTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHHH-----HHHHHhh-cCHHHHHHHHHHHH
Confidence 445777788888888887776543 25567778888888776664432 2222221 23334567899999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..|.+++...+++..... -..+...++-++..|++.+. ++..+.++.
T Consensus 111 ~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~ 157 (336)
T d1b89a_ 111 DRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLEL 157 (336)
T ss_dssp HTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHh
Confidence 999999999999976532 24577788999999999864 444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.87 E-value=12 Score=30.14 Aligned_cols=126 Identities=14% Similarity=0.061 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..+|..+...|.+.....-+ .+.......+......++..|-..|.+++...+++...... ..+...++-++.
T Consensus 69 ~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~ 141 (336)
T d1b89a_ 69 TRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAI 141 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHH
Confidence 56777777777776655332 22334455666777889999999999999999999775432 344557889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHhCCCCc
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNV----------SIVSMMGNAFQKLGMLDKYEKLKKKYPPPK 224 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~----------~ty~~li~~~~~~g~~~~a~~l~~~~~p~~ 224 (310)
.|++.+. ++..+.+... .+ ..|. .-|.-++..|.+.|+++.|..++=.-.++.
T Consensus 142 lyak~~~-~kl~e~l~~~--s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~ 204 (336)
T d1b89a_ 142 LYSKFKP-QKMREHLELF--WS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA 204 (336)
T ss_dssp HHHTTCH-HHHHHHHHHH--ST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTT
T ss_pred HHHHhCh-HHHHHHHHhc--cc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhh
Confidence 9988653 3333333332 11 1221 124566677777777777766654433333
|