Citrus Sinensis ID: 021600

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MEAKVFPLTCAPLVPSPCLLKANVNERISFFKTKALHGVVLRRCTDKEETLLEGMPPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKTIRQVEALLDLAINLKW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccccccccccccccccccccEEEEcccccHHHHccccHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccEEEEcccccHHHcccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meakvfpltcaplvpspcllkANVNERISFFKTKALHGVVLRRCTDKeetllegmppeyyddeWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGmrlkgypeedVRNARKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLNmhdgfddegWLKECKKHmvdtfpredpftilapagfdidkhqgplppppevdaVLLRVDFVREVDALLKEVRLEQNeaqtaegldpESVARRLKQQEKQKTIRQVEALLDLAINLKW
Flexible Loop (DISEMBL)
meakvfpltcaplvpspCLLKANVNERISFfktkalhgvvlrRCTDKeetllegmppeyyddewqAQRREKTKelhrrrqeedeeerrkieeyrdigmrlkgypeedvrnARKLVSSfiraeeeveerieetaergeltelVLMVIWNrldlarrdeekdairsldllyrRVETeilkreatpamRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVrleqneaqtaegldpesVARRLKQQEKQKTIRQVEALLDLAINLKW
Low Complexity Region (SEG)
MEAKVFPLTCAPLVPSPCLLKANVNERISFFKTKALHGVVLRRCTDKEETLLEGMPPEYYDDEWQAQRREKTKelhrrrqeedeeerrkieeyrDIGMRLKGYPEEDVRNARKLVSSFiraeeeveerieetaergeLTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKTIRQVEALLDLAINLKW
Disordered region (IsUnstruct)
****VFPLTCAPLVPSPCLLKANVNERISFFKTKALHGVVLRRCTDKEETLL***********************************************************************************GELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDK**********VDAVLLRVDFVREVDALLKEVR*********************************EALLDLAI****
Disordered Region (DISOPRED)
****VFP*TCAPLV*******************************************EYYD***********************************GM*LKGY****VRNARKLVSSFIRAEEEV**********GELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALL**********************************RQVEALLDLAINLKW
Disordered Region (DISEMBL)
MEAKVFPLTCAPLVPSPCLLKANVNERISFFKTKALHGVVLRRCTDKEETLLEGMPPEYYDDEWQAQRR******************RKIEEYRDIGMRLKGYPEEDVRNARKLVSSFIRA************ERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKTIRQVEALLDLAINLKW
Disordered Region (DISPRO)
*EAKVFPLTCAPLVPSPCLLKANVNERISFFKTKALHGVVLRRCTDKEETLLEGMPPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKTIRQVEALLDLAINLKW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAKVFPLTCAPLVPSPCLLKANVNERISFFKTKALHGVVLRRCTDKEETLLEGMPPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVRExxxxxxxxxxxxxxxxxxxxxDPESVARRLKQQEKQKTIRQVEALLDLAINLKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q39089	313	Protein PALE CRESS, chlor	yes	no	0.983	0.974	0.682	6e-99

>sp|Q39089|PAC_ARATH Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana GN=PAC PE=2 SV=1

 Score =  360 bits (925), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 217/318 (68%), Positives = 256/318 (80%), Gaps = 13/318 (4%)

Query: 1   MEAKVFPLTCA-PLVPSPCLLKAN--VNERISFFKTKALHGVVLRRCT-DKEETLLEGMP 56
           M A    LTCA PL  SP ++ A   +   +S    K       RRC+ + +E LLEGMP
Sbjct: 1   MAATSLVLTCASPLFSSPRVISATKKLTTELSISTAK-----FRRRCSGNNDEVLLEGMP 55

Query: 57  PEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLVS 116
           PEYYDDEWQA++REKTKEL R ++EE+EEE RKIEEYR+IG RLK +PE+D+R ARKLVS
Sbjct: 56  PEYYDDEWQARQREKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVS 115

Query: 117 SFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEI 176
           SFIRA EEVEERIEE AE+GEL ELVLM+IWNRLDLARRD+EKDAIRSLDLLYRRVETEI
Sbjct: 116 SFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEI 175

Query: 177 LKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQG 236
           LKR+A+PAM+LLNDLLNMHDGF+D+ WLK+C+K M +TFPREDPF+IL P GFDID HQG
Sbjct: 176 LKRQASPAMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQG 235

Query: 237 PLPPP--PEVDAVLLRVDFVREVDALLKEVRLEQN--EAQTAEGLDPESVARRLKQQEKQ 292
            L PP   E D  LLRVDFVREVDALL+EVR+E++       EGLDPE++A + KQQEKQ
Sbjct: 236 QLRPPIETETDNTLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQ 295

Query: 293 KTIRQVEALLDLAINLKW 310
           +TIRQ+EA+LDLA+NLKW
Sbjct: 296 RTIRQIEAILDLALNLKW 313

Required for the differentiation of chloroplast from proplastids or etioplasts, probably by modulating some chloroplast-encoded genes expression and mRNA maturation. Involved in leaf-cells differentiation.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
224128672	313	predicted protein [Populus trichocarpa]	0.990	0.980	0.734	1e-118
359479800	315	PREDICTED: uncharacterized protein LOC10	1.0	0.984	0.768	1e-112
356536754	312	PREDICTED: uncharacterized protein LOC10	0.893	0.887	0.763	1e-102
449444649	314	PREDICTED: uncharacterized protein LOC10	0.948	0.936	0.726	1e-100
357133832	325	PREDICTED: uncharacterized protein LOC10	0.848	0.809	0.699	3e-98
242087841	326	hypothetical protein SORBIDRAFT_09g01947	0.835	0.794	0.698	4e-98
15227228	313	pale cress protein [Arabidopsis thaliana	0.983	0.974	0.682	4e-97
297824923	325	hypothetical protein ARALYDRAFT_484005 [	1.0	0.953	0.667	7e-97
1223582	309	PAC [Arabidopsis thaliana]	0.961	0.964	0.691	4e-96
326494322	325	predicted protein [Hordeum vulgare subsp	0.835	0.796	0.694	2e-94

>gi|224128672|ref|XP_002320390.1| predicted protein [Populus trichocarpa] gi|222861163|gb|EEE98705.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/316 (73%), Positives = 267/316 (84%), Gaps = 9/316 (2%)

Query: 1   MEAKVFPLTCAP-LVPSPCLLKANVNERISFFKTKALHG-VVLRRCTDK----EETLLEG 54
           MEAKVFPLTC P L+PS   +    N R  +FK + L     +R+ T K    EE LL+G
Sbjct: 1   MEAKVFPLTCTPPLLPS---IPFQANMRAVYFKPRRLSCCAAMRKSTAKTKKGEEQLLDG 57

Query: 55  MPPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKL 114
           MP EYYD+EWQAQ+REKTKEL R R++ED+EE R +E YR+IG+RLKGYPEEDV+ A+KL
Sbjct: 58  MPKEYYDEEWQAQQREKTKELERLRKQEDDEEERMVENYREIGIRLKGYPEEDVKKAKKL 117

Query: 115 VSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVET 174
           VSSFIRAEEEVEE+IEE AE+GELTELVLMVIWNRLDLARRD+EKDAIRSLDLLYRR+ET
Sbjct: 118 VSSFIRAEEEVEEKIEEAAEKGELTELVLMVIWNRLDLARRDDEKDAIRSLDLLYRRIET 177

Query: 175 EILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKH 234
           EILKREATPAMRLLNDLLNMHDGF+D+ W+KEC+K M+DTFPREDPF+ILAP GFDID+H
Sbjct: 178 EILKREATPAMRLLNDLLNMHDGFNDDEWMKECRKRMIDTFPREDPFSILAPPGFDIDQH 237

Query: 235 QGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKT 294
            GP+ PP E D +LLRVDFVREVDALLKEVR EQ+E Q  EG DPESVA +LKQQEKQ+T
Sbjct: 238 AGPVRPPLEADDILLRVDFVREVDALLKEVRQEQSEEQNVEGFDPESVASKLKQQEKQRT 297

Query: 295 IRQVEALLDLAINLKW 310
           I +VEALLDLAI+LKW
Sbjct: 298 IHKVEALLDLAISLKW 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479800|ref|XP_002271766.2| PREDICTED: uncharacterized protein LOC100249345 [Vitis vinifera] gi|296086712|emb|CBI32347.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/315 (76%), Positives = 273/315 (86%), Gaps = 5/315 (1%)

Query: 1   MEAKVFPLTCAPLVPSP----CLLKANVNERISFFKTKALHGV-VLRRCTDKEETLLEGM 55
           MEAK F L CAPL PSP     + +  +  + S F +K   G  VLRR  +KEE  L G+
Sbjct: 1   MEAKAFRLLCAPLPPSPQPTSTVGRITIPLKPSPFNSKPPSGAGVLRRSKNKEEQELYGL 60

Query: 56  PPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLV 115
           P EYYDDEWQA++REKTKELHRRRQEE+EEE RK+EEYR+IG+RLKGYPEE+V+ A+KLV
Sbjct: 61  PKEYYDDEWQARQREKTKELHRRRQEEEEEEERKVEEYREIGLRLKGYPEEEVKKAKKLV 120

Query: 116 SSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETE 175
           SSFIR+ EEVEE+IEE AE+GELTELVLMVIWNRLDLARRD+EKDA+RSLDLLYRRVETE
Sbjct: 121 SSFIRSAEEVEEKIEEAAEKGELTELVLMVIWNRLDLARRDDEKDAVRSLDLLYRRVETE 180

Query: 176 ILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQ 235
           ILKREA+PAMRLLNDLLNMHDGFDDEGWLK+CKK M+DTFPREDPF+IL PAGF+ID+HQ
Sbjct: 181 ILKREASPAMRLLNDLLNMHDGFDDEGWLKKCKKCMIDTFPREDPFSILVPAGFNIDEHQ 240

Query: 236 GPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKTI 295
           G L PP EVD  LLRVDFVREVDALL+EVR EQ+EAQ A+GLDPESVA RLKQQEKQ+TI
Sbjct: 241 GKLRPPLEVDDPLLRVDFVREVDALLQEVRPEQSEAQNAQGLDPESVASRLKQQEKQQTI 300

Query: 296 RQVEALLDLAINLKW 310
           RQVEALLDLAINLKW
Sbjct: 301 RQVEALLDLAINLKW 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536754|ref|XP_003536900.1| PREDICTED: uncharacterized protein LOC100802895 [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/283 (76%), Positives = 236/283 (83%), Gaps = 6/283 (2%)

Query: 34  KALHGVVLRRCTDKEETLLE---GMPPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKI 90
           K   G VLRRC  +E+   +   GMP EYYDDEWQAQ+REKTKELHR R +E+EEE RKI
Sbjct: 30  KCTSGAVLRRCVKEEKEEEQLLEGMPKEYYDDEWQAQQREKTKELHRLRIQEEEEEERKI 89

Query: 91  EEYRDIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNRL 150
            EYR+IGMRLK YPE+DV  ARKLVSSF+RA EEVEERIEE AE+GELTELVLMVIWNRL
Sbjct: 90  GEYREIGMRLKEYPEDDVIKARKLVSSFLRAAEEVEERIEEAAEKGELTELVLMVIWNRL 149

Query: 151 DLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKH 210
           DLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLL M+DG++ E WLK+CKK 
Sbjct: 150 DLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLIMYDGYNFEEWLKKCKKV 209

Query: 211 MVDTFPREDPFTILAPAG---FDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLE 267
           M+DTFPREDPF+IL P G   FDIDKH GPL P  EVD  LLRVDFVREVD LL+EV  E
Sbjct: 210 MIDTFPREDPFSILVPPGFESFDIDKHHGPLRPSLEVDNTLLRVDFVREVDELLQEVHSE 269

Query: 268 QNEAQTAEGLDPESVARRLKQQEKQKTIRQVEALLDLAINLKW 310
           ++E Q   G DPESVA RLKQQEKQ+TIRQVEALLDLAI LKW
Sbjct: 270 ESEVQNEPGFDPESVANRLKQQEKQQTIRQVEALLDLAIGLKW 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444649|ref|XP_004140086.1| PREDICTED: uncharacterized protein LOC101220904 [Cucumis sativus]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/307 (72%), Positives = 253/307 (82%), Gaps = 13/307 (4%)

Query: 8   LTCAPLVPSPCLLKANVNERISFFKTKALHGVVLRRCTDKEETLLEGMPPEYYDDEWQAQ 67
           L+  P++P   L  +  + R S        G+VLRR   KEE L++G+P EYYDDEWQA+
Sbjct: 17  LSTTPILPK--LWTSPSSHRCS-------SGLVLRRSLSKEEPLIDGLPKEYYDDEWQAR 67

Query: 68  RREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEE 127
           +REKTKELHRRRQEEDEEE RK+EEYR+IGMRLK +PEEDVR ARKLVSSFIRA EEVEE
Sbjct: 68  QREKTKELHRRRQEEDEEEDRKVEEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEE 127

Query: 128 RIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRL 187
           +IEE AE+GELTELVL+VIWNRLDLAR D+EKDA+RSLDLLYRRVETEILKREATPAMRL
Sbjct: 128 KIEEAAEKGELTELVLLVIWNRLDLARCDDEKDAVRSLDLLYRRVETEILKREATPAMRL 187

Query: 188 LNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEV--D 245
           LN+LLNM+DGFD+EGWLK C+K MVDTFPREDPF+IL PAGFDIDKHQGPL P   V  D
Sbjct: 188 LNELLNMYDGFDNEGWLKACRKCMVDTFPREDPFSILVPAGFDIDKHQGPLRPSLAVESD 247

Query: 246 AVLLRVDFVREVDALLKEVRLEQNEAQ--TAEGLDPESVARRLKQQEKQKTIRQVEALLD 303
             LLRVDFVREVD LL+EV   Q++ Q   A+  D ESVA RLKQQEKQ+TIR VEALLD
Sbjct: 248 NTLLRVDFVREVDELLQEVGAVQSDVQNGNADSFDAESVASRLKQQEKQRTIRLVEALLD 307

Query: 304 LAINLKW 310
           LA+NLKW
Sbjct: 308 LAMNLKW 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357133832|ref|XP_003568526.1| PREDICTED: uncharacterized protein LOC100831844 [Brachypodium distachyon]

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 184/263 (69%), Positives = 219/263 (83%)

Query: 48  EETLLEGMPPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEED 107
           +E  LEGM PE+YD+EWQA +RE+TKE H  RQ+E+ EE  K  EYR+IGMRLK YP+E+
Sbjct: 63  DEVELEGMSPEFYDEEWQANQRERTKEWHAYRQKEEAEEEIKSNEYREIGMRLKAYPQEE 122

Query: 108 VRNARKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDL 167
           V  AR LVSSFIRA E+VE+ IE+ AERGELTELVLMVI NRLD+ARRD+EKDAIRSLDL
Sbjct: 123 VCKARVLVSSFIRAGEDVEKEIEKAAERGELTELVLMVIRNRLDVARRDDEKDAIRSLDL 182

Query: 168 LYRRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPA 227
           LYRRVETEIL+ EATPAMRLL++LLN+HDG DD+ WLK C+KHM++ FPREDPFT++ PA
Sbjct: 183 LYRRVETEILRSEATPAMRLLDELLNIHDGSDDDKWLKTCRKHMIEVFPREDPFTMVFPA 242

Query: 228 GFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLK 287
           GFD++KH+G +  PP+ D VLLRVDFVREVD LLKEV+ EQ + +   G DPESVA  LK
Sbjct: 243 GFDMEKHEGQIKLPPQSDDVLLRVDFVREVDELLKEVQAEQEKNKLQTGYDPESVATMLK 302

Query: 288 QQEKQKTIRQVEALLDLAINLKW 310
           QQEK +TIRQVEALL+LA  LKW
Sbjct: 303 QQEKMRTIRQVEALLELAATLKW 325

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242087841|ref|XP_002439753.1| hypothetical protein SORBIDRAFT_09g019470 [Sorghum bicolor] gi|241945038|gb|EES18183.1| hypothetical protein SORBIDRAFT_09g019470 [Sorghum bicolor]

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 181/259 (69%), Positives = 219/259 (84%)

Query: 52  LEGMPPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNA 111
           LEGMPPE+YD+EWQA++RE+TKE H  RQ+E+ EE R   EYR+IGMRLK YP+E+V  A
Sbjct: 68  LEGMPPEFYDEEWQARQRERTKEWHAYRQKEEAEEERITNEYREIGMRLKAYPQEEVCKA 127

Query: 112 RKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRR 171
           R LVSSFIRA E+VE+ IE+ AERGELTELVLMVIWNRLD+ARRD+E+DAIRSLDLLYRR
Sbjct: 128 RILVSSFIRAGEDVEKEIEKAAERGELTELVLMVIWNRLDVARRDDERDAIRSLDLLYRR 187

Query: 172 VETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDI 231
           VETEILK EATPAM LLN+LLN+HDG D+E WLK+C+K M++ FPREDPFT++ PAGF +
Sbjct: 188 VETEILKSEATPAMSLLNELLNLHDGSDNEKWLKKCRKRMLEVFPREDPFTVVFPAGFKM 247

Query: 232 DKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEK 291
           + H+G +  PP+ D +LLRVDFVREVD LLKEV+ EQ++ +   G DPESVA  LKQQEK
Sbjct: 248 ENHEGRIELPPQDDDLLLRVDFVREVDELLKEVQAEQDKNKQQVGFDPESVAYMLKQQEK 307

Query: 292 QKTIRQVEALLDLAINLKW 310
            +TIRQVE+LLDLA +LKW
Sbjct: 308 MQTIRQVESLLDLAASLKW 326

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227228|ref|NP_182332.1| pale cress protein [Arabidopsis thaliana] gi|75101925|sp|Q39089.1|PAC_ARATH RecName: Full=Protein PALE CRESS, chloroplastic; Flags: Precursor gi|1483213|emb|CAA65334.1| PAC [Arabidopsis thaliana] gi|21555469|gb|AAM63866.1| pale cress protein [Arabidopsis thaliana] gi|26450607|dbj|BAC42415.1| putative t9j23 pale cress protein [Arabidopsis thaliana] gi|28950889|gb|AAO63368.1| At2g48120 [Arabidopsis thaliana] gi|330255845|gb|AEC10939.1| pale cress protein [Arabidopsis thaliana]

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 217/318 (68%), Positives = 256/318 (80%), Gaps = 13/318 (4%)

Query: 1   MEAKVFPLTCA-PLVPSPCLLKAN--VNERISFFKTKALHGVVLRRCT-DKEETLLEGMP 56
           M A    LTCA PL  SP ++ A   +   +S    K       RRC+ + +E LLEGMP
Sbjct: 1   MAATSLVLTCASPLFSSPRVISATKKLTTELSISTAK-----FRRRCSGNNDEVLLEGMP 55

Query: 57  PEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLVS 116
           PEYYDDEWQA++REKTKEL R ++EE+EEE RKIEEYR+IG RLK +PE+D+R ARKLVS
Sbjct: 56  PEYYDDEWQARQREKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVS 115

Query: 117 SFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEI 176
           SFIRA EEVEERIEE AE+GEL ELVLM+IWNRLDLARRD+EKDAIRSLDLLYRRVETEI
Sbjct: 116 SFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEI 175

Query: 177 LKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQG 236
           LKR+A+PAM+LLNDLLNMHDGF+D+ WLK+C+K M +TFPREDPF+IL P GFDID HQG
Sbjct: 176 LKRQASPAMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQG 235

Query: 237 PLPPP--PEVDAVLLRVDFVREVDALLKEVRLEQN--EAQTAEGLDPESVARRLKQQEKQ 292
            L PP   E D  LLRVDFVREVDALL+EVR+E++       EGLDPE++A + KQQEKQ
Sbjct: 236 QLRPPIETETDNTLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQ 295

Query: 293 KTIRQVEALLDLAINLKW 310
           +TIRQ+EA+LDLA+NLKW
Sbjct: 296 RTIRQIEAILDLALNLKW 313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824923|ref|XP_002880344.1| hypothetical protein ARALYDRAFT_484005 [Arabidopsis lyrata subsp. lyrata] gi|297326183|gb|EFH56603.1| hypothetical protein ARALYDRAFT_484005 [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (923), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 217/325 (66%), Positives = 255/325 (78%), Gaps = 15/325 (4%)

Query: 1   MEAKVFPLTCAPLVPSPCLLKANVNERISF-FKTKALHGVV----------LRRCTDKEE 49
           M A    LTCA  + S  L+ A       F   T    G +           RRC+ K+E
Sbjct: 1   MAATSLVLTCASPLFSSRLVSATKTLTTEFPISTGQFLGGLNSPADFSAKFRRRCSGKDE 60

Query: 50  TLLEGMPPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVR 109
            LL+GMPPEYYDDEWQAQ+REKTKEL R ++EE+EEE RKIEEYR+IGMRLK +PE+D+R
Sbjct: 61  VLLQGMPPEYYDDEWQAQQREKTKELRRMQREEEEEEERKIEEYREIGMRLKEFPEQDLR 120

Query: 110 NARKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLY 169
            ARKLVSSFIRA EEVEERIEE AE+G+L ELVLM+IWNRLDLARRD+EKDAIRSLDLLY
Sbjct: 121 KARKLVSSFIRAAEEVEERIEEAAEKGQLDELVLMIIWNRLDLARRDDEKDAIRSLDLLY 180

Query: 170 RRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGF 229
           RRVETEILKR+A+PAM LLNDLLNMHDGF+D+ WLK+C+K M +TFPREDPF+IL P GF
Sbjct: 181 RRVETEILKRQASPAMNLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGF 240

Query: 230 DIDKHQGPLPPP--PEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEG--LDPESVARR 285
           DID HQG L PP   E D  LLRVDFVREVDALL+EVR+E++    ++G  LDPE++A +
Sbjct: 241 DIDMHQGQLRPPIETETDNTLLRVDFVREVDALLQEVRIEEDAETGSKGEELDPEAIALK 300

Query: 286 LKQQEKQKTIRQVEALLDLAINLKW 310
            KQQEKQ+TIRQVEA+LDLA+NLKW
Sbjct: 301 FKQQEKQRTIRQVEAILDLALNLKW 325

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1223582|emb|CAA65337.1| PAC [Arabidopsis thaliana]

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 215/311 (69%), Positives = 254/311 (81%), Gaps = 13/311 (4%)

Query: 8   LTCA-PLVPSPCLLKAN--VNERISFFKTKALHGVVLRRCT-DKEETLLEGMPPEYYDDE 63
           LTCA PL  SP ++ A   +   +S    K       RRC+ + +E LLEGMPPEYYDDE
Sbjct: 4   LTCASPLFSSPRVISATKKLTTELSISTAK-----FRRRCSGNNDEVLLEGMPPEYYDDE 58

Query: 64  WQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLVSSFIRAEE 123
           WQA++REKTKEL R ++EE+EEE RKIEEYR+IG RLK +PE+D+R ARKLVSSFIRA E
Sbjct: 59  WQARQREKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVSSFIRAAE 118

Query: 124 EVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATP 183
           EVEERIEE AE+GEL ELVLM+IWNRLDLARRD+EKDAIRSLDLLYRRVETEILKR+A+P
Sbjct: 119 EVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASP 178

Query: 184 AMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPP-- 241
           AM+LLNDLLNMHDGF+D+ WLK+C+K M +TFPREDPF+IL P GFDID HQG L PP  
Sbjct: 179 AMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQGQLRPPIE 238

Query: 242 PEVDAVLLRVDFVREVDALLKEVRLEQN--EAQTAEGLDPESVARRLKQQEKQKTIRQVE 299
            E D  LLRVDFVREVDALL+EVR+E++       EGLDPE++A + KQQEKQ+TIRQ+E
Sbjct: 239 TETDNTLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQRTIRQIE 298

Query: 300 ALLDLAINLKW 310
           A+LDLA+NLKW
Sbjct: 299 AILDLALNLKW 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326494322|dbj|BAJ90430.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 180/259 (69%), Positives = 215/259 (83%)

Query: 52  LEGMPPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNA 111
           LEGMP E+YD+EWQA +RE+TKE H  RQ+E+ EE  K  EYR+IGMR+K YP+E+V  A
Sbjct: 67  LEGMPSEFYDEEWQANQRERTKEWHAYRQKEEAEEEAKSSEYREIGMRMKAYPQEEVCKA 126

Query: 112 RKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRR 171
           R LVSSFIRA E+VE+ IE+ AERGELTELVLMVIWNRLD+ARRD+EKDAIRSLDLLYRR
Sbjct: 127 RVLVSSFIRAGEDVEKVIEKAAERGELTELVLMVIWNRLDVARRDDEKDAIRSLDLLYRR 186

Query: 172 VETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDI 231
           VETEIL+ EATPAMRLL++LLN+HDG DD+ WLK C+KHM++ FPREDPFT++ P GFD+
Sbjct: 187 VETEILRSEATPAMRLLDELLNIHDGSDDDKWLKACRKHMIEVFPREDPFTMIFPPGFDM 246

Query: 232 DKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEK 291
            KH G +  PP+ D VLLRVDFVRE+D LLKEV+ E ++ +   G DPESVA  LKQQEK
Sbjct: 247 KKHDGQIKLPPQDDDVLLRVDFVREIDELLKEVQAEHDKNKLQTGYDPESVAAMLKQQEK 306

Query: 292 QKTIRQVEALLDLAINLKW 310
            +TIRQVEALL+LA  LKW
Sbjct: 307 LRTIRQVEALLELAATLKW 325

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2039361	313	PAC "AT2G48120" [Arabidopsis t	0.983	0.974	0.584	6.5e-90

TAIR|locus:2039361 PAC "AT2G48120" [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 186/318 (58%), Positives = 221/318 (69%)

Query:     1 MEAKVFPLTCA-PLVPSPCLLKAN--VNERISFFKTKALHGVVLRRCT-DKEETLLEGMP 56
             M A    LTCA PL  SP ++ A   +   +S    K       RRC+ + +E LLEGMP
Sbjct:     1 MAATSLVLTCASPLFSSPRVISATKKLTTELSISTAK-----FRRRCSGNNDEVLLEGMP 55

Query:    57 PEYYDDEWQAQRREKTKXXXXXXXXXXXXXXXXXXXXXDIGMRLKGYPEEDVRNARKLVS 116
             PEYYDDEWQA++REKTK                     +IG RLK +PE+D+R ARKLVS
Sbjct:    56 PEYYDDEWQARQREKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVS 115

Query:   117 SFXXXXXXXXXXXXXXXXXXXLTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEI 176
             SF                   L ELVLM+IWNRLDLARRD+EKDAIRSLDLLYRRVETEI
Sbjct:   116 SFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEI 175

Query:   177 LKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQG 236
             LKR+A+PAM+LLNDLLNMHDGF+D+ WLK+C+K M +TFPREDPF+IL P GFDID HQG
Sbjct:   176 LKRQASPAMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQG 235

Query:   237 PLPPP--PEVDAVLLRVDFVREVDALLKEVRLEQNEA--QTAEGLDPESVARRLKQQEKQ 292
              L PP   E D  LLRVDFVREVDALL+EVR+E++       EGLDPE++A + KQQEKQ
Sbjct:   236 QLRPPIETETDNTLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQ 295

Query:   293 KTIRQVEALLDLAINLKW 310
             +TIRQ+EA+LDLA+NLKW
Sbjct:   296 RTIRQIEAILDLALNLKW 313


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      310       270   0.00097  114 3  11 22  0.49    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  25.46u 0.07s 25.53t   Elapsed:  00:00:27
  Total cpu time:  25.46u 0.07s 25.53t   Elapsed:  00:00:28
  Start:  Fri May 10 03:01:23 2013   End:  Fri May 10 03:01:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

GO:0009501 "amyloplast" evidence=IDA

GO:0009509 "chromoplast" evidence=IDA

GO:0009513 "etioplast" evidence=IDA

GO:0009537 "proplastid" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0071482 "cellular response to light stimulus" evidence=IEP

GO:0010239 "chloroplast mRNA processing" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39089	PAC_ARATH	No assigned EC number	0.6823	0.9838	0.9744	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XIV000795	hypothetical protein (313 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IV.722.1	hypothetical protein (276 aa)				•	•				0.423

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 50/312 (16%), Positives = 95/312 (30%), Gaps = 107/312 (34%)

Query: 41  LRRCTDKEETLLEGMPPEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRL 100
           L+ C +  ET+LE +    Y  +     R       + R    + E R++       ++ 
Sbjct: 189 LKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-------LKS 240

Query: 101 KGYPE-----EDVRNAR-----------------KLVSSFIRAEEEVEERIEETAERGEL 138
           K Y        +V+NA+                 K V+ F+ A       ++       L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH--HSMTL 298

Query: 139 TELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEI--LKREATPAMRLLNDLL--NM 194
           T                DE         LL + ++     L RE          ++  ++
Sbjct: 299 TP---------------DE------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 195 HDGFDD-EGWLK-ECKK--HMVDTF-----PRE-----DPFTILAPAGFDIDKHQGPLPP 240
            DG    + W    C K   ++++      P E     D  ++  P    I         
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHI--------- 387

Query: 241 PPEVDAVL---LRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKTIRQ 297
           P  + +++   +    V  V   L +  L                   +++Q K+ TI  
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSL-------------------VEKQPKESTIS- 427

Query: 298 VEALLDLAINLK 309
              +  + + LK
Sbjct: 428 ---IPSIYLELK 436

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 43/305 (14%), Positives = 86/305 (28%), Gaps = 84/305 (27%)

Query: 4   KVFPLTCAPLVPSPCLLKANVNERISFFKTKALHGVVLRRCTDKEETLLEGMPPEYYDDE 63
             F L+C  L+ +       V + +S   T                  L+        DE
Sbjct: 260 NAFNLSCKILLTTR---FKQVTDFLSAATTT--------------HISLDHHSMTLTPDE 302

Query: 64  WQAQRREKTKELHRR----RQEEDEEERRKI---------EEYRDIGMRLKGYPEEDVRN 110
                    K L  +    R ++   E             E  RD       +   +   
Sbjct: 303 --------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 111 ARKLVSSFIRAEEEVEER--IEETA---ERGELTELVLMVIWNRLD-------------- 151
              ++ S +   E  E R   +  +       +  ++L +IW  +               
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 152 -LARRDEEKDAIRSLDLLYRRVETEILKREATPAM-RLLNDLLNMHDGFDDEGWLKECKK 209
            L  +   K++  S+  +Y  ++   +K E   A+ R + D  N+   FD +  +     
Sbjct: 415 SLVEKQ-PKESTISIPSIYLELK---VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 210 ---------HMVDTFPRE--DPFTILAPAGFDID------KHQG-PLPPPPEVDAVLLRV 251
                    H+ +    E    F ++     D        +H          +   L ++
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVF---LDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 252 DFVRE 256
            F + 
Sbjct: 528 KFYKP 532

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00