Citrus Sinensis ID: 021756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMSNEQFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYFQMQSMQHQ
Secondary Structure (PSIPRED)
cccccEEcccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccEEcccccHcccccccEcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHcccccHcccHccEEcccHHHHHHHHHHHHHHHHccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccc
Coil and Loop (DISEMBL)
mnrgieilspasylensnwlfqeskgtkwtpqenKQFENALavydkdtpdRWIKVAAMIPGKTVGDVIKQYKELEEdvsdieaglipipgygndsftlewvdsnqgydglknfygpggkrgsstrpsdqerkkgvpwteEEHRQFLMGLkkfgkgdwrnisrnfvttrtptqvASHAQKYFNRqltggkdkrrssihdittvnldetatsssennkppspspsAAVIQLqqqpktvdmsneqfnwksqNEGTAMLFNsmngtafmapfcgissygpklqeqnllggnlngsqfgAYSAYFQMQSMQHQ
Flexible Loop (DISEMBL)
mnrgieilspasylensNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAamipgktvgDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPggkrgsstrpsdqerkkgvpwteeeHRQFLMglkkfgkgdwRNISRNFVTtrtptqvashaQKYFNrqltggkdkrrssihdittvnldetatsssennkppspSPSAAVIQLQQQPKTVDMSNEQFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYFQMQSMQHQ
Low Complexity Region (SEG)
MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRRSSIHDITTVNLDETATsssennkppspspsAAVIQLQQQPKTVDMSNEQFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQnllggnlngSQFGAYSAYFQMQSMQHQ
Disordered region (IsUnstruct)
***********SYLENSNWLFQE****KW******QFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFY****************************RQFLMGLKKFGKGDWRNISRNFVTTRTPTQVA****KYF**********************************************************************TAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYF********
Disordered Region (DISOPRED)
**RGIEILSPASY********************NKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYD*****************************TEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY*************************************************************************************************************************M******
Disordered Region (DISEMBL)
MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPG*********************EEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRRSSIHDITTVNLDE******************************DMSNEQFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYFQMQSMQHQ
Disordered Region (DISPRO)
****IEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGN****************************************GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLT**************************************************************************GTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYFQM******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMSNEQFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYFQMQSMQHQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q8S9H7	307	Transcription factor DIVA	N/A	no	0.970	0.973	0.583	2e-92
Q2V9B0	297	Transcription factor MYB1	N/A	no	0.292	0.303	0.622	3e-22
Q1A173	97	Protein RADIALIS-like 6 O	no	no	0.204	0.649	0.571	3e-14
Q58FS3	93	Transcription factor RADI	N/A	no	0.214	0.709	0.545	4e-13
Q869R9	734	Myb-like protein J OS=Dic	yes	no	0.262	0.110	0.476	4e-13
F4JVB8	100	Protein RADIALIS-like 1 O	no	no	0.204	0.63	0.492	1e-12
Q9SIJ5	101	Protein RADIALIS-like 2 O	no	no	0.204	0.623	0.523	3e-12
Q1G3C4	77	Protein RADIALIS-like 4 O	no	no	0.201	0.805	0.532	2e-11
Q6NNN0	81	Protein RADIALIS-like 3 O	no	no	0.204	0.777	0.539	3e-11
Q8GW75	100	Protein RADIALIS-like 5 O	no	no	0.194	0.6	0.516	1e-10

>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1

 Score =  339 bits (869), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 179/307 (58%), Positives = 222/307 (72%), Gaps = 8/307 (2%)

Query: 5   IEILSPASYLENSNWLFQESKGT-KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKT 63
           +EIL+P+SY  +S+W  +ES+ T +WT  ENK FENALAV+D++TP+RW +VA  +PGKT
Sbjct: 1   MEILAPSSYFSSSSWFLEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKT 60

Query: 64  VGDVIKQYKELEEDVSDIEAGLIPIPGYGNDS-FTLEWVDSNQGYDGLKNFYGPGGKRGS 122
           VGDV++QYKELE+DVS IEAG +P+PGY   S FTLEW  S  G+DG K  YG GG++ S
Sbjct: 61  VGDVMRQYKELEDDVSSIEAGFVPVPGYSTSSPFTLEW-GSGHGFDGFKQSYGTGGRKSS 119

Query: 123 STRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN 182
           S RPS+QERKKGVPWTEEEH+ FLMGLKK+GKGDWRNISRNFV TRTPTQVASHAQKYF 
Sbjct: 120 SGRPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFI 179

Query: 183 RQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMSNEQ 242
           RQL+GGKDKRR+SIHDITTVNL +  T S +N KPPS SP  ++   QQQ  +  +    
Sbjct: 180 RQLSGGKDKRRASIHDITTVNLSDNQTPSPDNKKPPS-SPDHSMA--QQQTSSTSIHKLP 236

Query: 243 FNWKSQNEGTAMLFNS--MNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYF 300
           F W   +  T M F S   +G  F +   G++SYG K+Q Q +  G    +  G+ +  F
Sbjct: 237 FQWDQTSNETIMGFASSGHHGNMFQSNPFGMNSYGFKMQGQQMQRGGFCDTYLGSQNMAF 296

Query: 301 QMQSMQH 307
           QMQS  H
Sbjct: 297 QMQSGLH 303

Involved in the dorsovental asymmetry of flowers. Promotes ventral identity.
Antirrhinum majus (taxid: 4151)

>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 68/90 (75%)

Query: 127 SDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLT 186
           S +ERK+GVPWTEEEH+ FL+GL+K GKGDWR ISRNFV TRTPTQVASHAQKYF R+  
Sbjct: 87  SGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSN 146

Query: 187 GGKDKRRSSIHDITTVNLDETATSSSENNK 216
             + +RRSS+ DITT ++        EN +
Sbjct: 147 LNRRRRRSSLFDITTDSVSVMPIEEVENKQ 176

Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance.

Solanum tuberosum (taxid: 4113)

>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 44/63 (69%)

Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPI 88
          WT  +NK FE ALAVYDKDTPDRW  VA  + GKTV +V + Y  L ED+ +IE G +P+
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 89 PGY 91
          P Y
Sbjct: 72 PNY 74

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 45/66 (68%)

Query: 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGL 85
          G  W+ +ENK FE ALAVYDKDTPDRW  VA  + G+T  +V K Y+ L ED+  IE+G 
Sbjct: 8  GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGK 67

Query: 86 IPIPGY 91
          +P P Y
Sbjct: 68 VPFPNY 73

Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity.

Antirrhinum majus (taxid: 4151)

>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)

Query: 121 GSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180
           G  T P+ ++      WT+EEH +FL G++  GKG W+ I++ FV TRTPTQ+ SHAQKY
Sbjct: 363 GGKTNPTGKKTSLKQGWTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKY 421

Query: 181 FNRQLTGGKDKRRSSIHDITTVNL 204
           + RQ    K+KR  SIHD++  +L
Sbjct: 422 YLRQKQETKNKR--SIHDLSLQDL 443

Dictyostelium discoideum (taxid: 44689)

>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPI 88
          WT ++NK FE ALA YD+DTP+RW  VA ++ GKT  +V + Y+ L +D++ IE G +P 
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73

Query: 89 PGY 91
          P Y
Sbjct: 74 PNY 76

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 41/63 (65%)

Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPI 88
          WT ++NK FE ALAVYD+DTPDRW  VA  + GKT  +  +QY  L  D+  IE G +P 
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 89 PGY 91
          P Y
Sbjct: 74 PDY 76

Probable transcription factor. Required for female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 44/62 (70%)

Query: 32 QENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGY 91
          +E+KQFE ALA +DKDTPDRW K+A  + GK+  +V + Y+ L  DV+DIE+G  P P Y
Sbjct: 14 REDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQPRY 73

Query: 92 GN 93
           N
Sbjct: 74 RN 75

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 43/63 (68%)

Query: 29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPI 88
          WT +ENK FE ALA YD+DTPDRW  VA  + GK+  +V + Y+ L  DV+DIE+G  P 
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYPH 71

Query: 89 PGY 91
          P Y
Sbjct: 72 PNY 74

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 41/60 (68%)

Query: 32 QENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGY 91
          ++NK FE ALAVYDKDTPDRW  VA  +  K+  +V + Y  L ED+ +IE  L+P+P Y
Sbjct: 15 KQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPLPKY 74

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
224087718	307	predicted protein [Populus trichocarpa]	0.996	1.0	0.756	1e-134
255588751	307	DNA binding protein, putative [Ricinus c	0.990	0.993	0.748	1e-133
51557078	310	MYB transcription factor [Hevea brasilie	0.996	0.990	0.720	1e-125
12005328	310	unknown [Hevea brasiliensis]	0.996	0.990	0.717	1e-124
84314023	310	MYB transcription factor [Hevea brasilie	0.996	0.990	0.717	1e-124
225440628	312	PREDICTED: uncharacterized protein LOC10	0.996	0.983	0.714	1e-123
358248436	309	MYB transcription factor MYB51 [Glycine	0.983	0.980	0.707	1e-120
292386082	304	MYB transcription factor [Malus x domest	0.951	0.963	0.704	1e-120
149727790	313	MYB transcription factor MYB33 [Medicago	0.993	0.977	0.671	1e-116
356494943	337	PREDICTED: uncharacterized protein LOC10	0.983	0.899	0.680	1e-116

>gi|224087718|ref|XP_002308211.1| predicted protein [Populus trichocarpa] gi|222854187|gb|EEE91734.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/308 (75%), Positives = 257/308 (83%), Gaps = 1/308 (0%)

Query: 1   MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP 60
           MNRGI IL PASYL+NSNWLFQE +GTKWTP+ENKQFENALA+YDKDTPDRW+KVAA+IP
Sbjct: 1   MNRGIGILYPASYLQNSNWLFQEGEGTKWTPEENKQFENALALYDKDTPDRWLKVAALIP 60

Query: 61  GKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKR 120
           GKTV DVIKQY+ELEEDV DIEAGLIPIPGY +DSFTLEWV SNQGYDGLK FY PGGKR
Sbjct: 61  GKTVDDVIKQYRELEEDVCDIEAGLIPIPGYNSDSFTLEWV-SNQGYDGLKQFYSPGGKR 119

Query: 121 GSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180
           G++TRPS+QERKKGVPWTEEEHRQFL+GL+K+GKGDWRNISRN+VTTRTPTQVASHAQKY
Sbjct: 120 GTATRPSEQERKKGVPWTEEEHRQFLLGLQKYGKGDWRNISRNYVTTRTPTQVASHAQKY 179

Query: 181 FNRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMSN 240
           F RQ TGGKDKRRSSIHDITTVNL +  + S EN +  SP  S   +Q Q QPKT     
Sbjct: 180 FIRQSTGGKDKRRSSIHDITTVNLPDAKSPSPENKRLSSPDHSTTTMQSQAQPKTAGTVK 239

Query: 241 EQFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYF 300
             F+WK QNEG A ++N  N      PFCGISS+G KLQEQNLLGG L G QFG Y+  F
Sbjct: 240 GLFDWKQQNEGIATVYNPANDNLLTTPFCGISSHGSKLQEQNLLGGTLPGYQFGPYNFIF 299

Query: 301 QMQSMQHQ 308
           QMQSMQHQ
Sbjct: 300 QMQSMQHQ 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588751|ref|XP_002534707.1| DNA binding protein, putative [Ricinus communis] gi|223524722|gb|EEF27676.1| DNA binding protein, putative [Ricinus communis]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/310 (74%), Positives = 258/310 (83%), Gaps = 5/310 (1%)

Query: 1   MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP 60
           MN+G+EILSPASYLENSNWLFQES+GTKWTP+ENK+FENALA++DKD PDRW KVAA+IP
Sbjct: 1   MNQGLEILSPASYLENSNWLFQESRGTKWTPEENKRFENALALFDKDEPDRWQKVAALIP 60

Query: 61  GKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGN--DSFTLEWVDSNQGYDGLKNFYGPGG 118
           GKTVGDVIKQY+ELEEDVSDIEAGLIPIPGY +  DSFTLEWV+ NQGYDG K +Y PGG
Sbjct: 61  GKTVGDVIKQYRELEEDVSDIEAGLIPIPGYSSSSDSFTLEWVNGNQGYDGFKQYYTPGG 120

Query: 119 KRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQ 178
           KR ++TRPS+QERKKGVPWTEEEHRQFLMGL+K+GKGDWRNISRNFVTTRTPTQVASHAQ
Sbjct: 121 KRTTATRPSEQERKKGVPWTEEEHRQFLMGLQKYGKGDWRNISRNFVTTRTPTQVASHAQ 180

Query: 179 KYFNRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDM 238
           KYF RQ TGGKDKRRSSIHDITTVNL +T + S E+ KP SP      I   Q PK V +
Sbjct: 181 KYFIRQSTGGKDKRRSSIHDITTVNLPDTKSPSPESKKPSSPD---HCITTMQSPKMVGV 237

Query: 239 SNEQFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSA 298
           +    +WK QNEG A +FN  NG   M+P CGISSYGPKLQEQNLL G L G QFG Y+ 
Sbjct: 238 AKGLLDWKPQNEGAAAVFNPTNGNLLMSPLCGISSYGPKLQEQNLLRGTLPGYQFGPYNL 297

Query: 299 YFQMQSMQHQ 308
            FQMQ MQ Q
Sbjct: 298 IFQMQPMQRQ 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51557078|gb|AAU06309.1| MYB transcription factor [Hevea brasiliensis]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/311 (72%), Positives = 253/311 (81%), Gaps = 4/311 (1%)

Query: 1   MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP 60
           M+RGIEILSPASYL+NSNWLF E++ TKWTP+ENKQFENALA+YDKD PDRW +VAA+IP
Sbjct: 1   MDRGIEILSPASYLQNSNWLFPETRATKWTPEENKQFENALALYDKDEPDRWQRVAAVIP 60

Query: 61  GKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGN-DSFTLEWVDSNQGYDGLKNFYGPGGK 119
           GKTVGDVIKQY+ELEEDVSDIEAGLIPIPGY + D+FTLEW ++NQGYDG +++Y PGGK
Sbjct: 61  GKTVGDVIKQYRELEEDVSDIEAGLIPIPGYSSSDAFTLEWFNNNQGYDGFRHYYTPGGK 120

Query: 120 RGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQK 179
           R ++ R S+QERKKGVPWTEEEHRQFLMGL+K+GKGDWRNISRNFVTTRTPTQVASHAQK
Sbjct: 121 RTTAARSSEQERKKGVPWTEEEHRQFLMGLQKYGKGDWRNISRNFVTTRTPTQVASHAQK 180

Query: 180 YFNRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMS 239
           YF RQ TGGKDKRRSSIHDITTVNL +T  S S + K  SP  S   +Q Q Q K V M+
Sbjct: 181 YFIRQSTGGKDKRRSSIHDITTVNLPDTK-SPSPDEKKSSPDHSTTSLQSQPQQKMVGMA 239

Query: 240 NEQFNWKSQNE--GTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYS 297
               +WK QNE  G A +F+  NG   MAP CGISSYG KLQEQNLL G L G QF  Y+
Sbjct: 240 KGLIDWKPQNEGGGAAGVFSQANGNLLMAPLCGISSYGQKLQEQNLLRGTLPGYQFAPYN 299

Query: 298 AYFQMQSMQHQ 308
             FQMQ MQ Q
Sbjct: 300 LIFQMQPMQRQ 310

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12005328|gb|AAG44394.1| unknown [Hevea brasiliensis]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/311 (71%), Positives = 253/311 (81%), Gaps = 4/311 (1%)

Query: 1   MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP 60
           M+RGIEILSPASYL+NSNWLF E++ TKWTP+ENKQFENALA+YDKD PDRW KVAA+IP
Sbjct: 1   MDRGIEILSPASYLQNSNWLFPETRATKWTPEENKQFENALALYDKDEPDRWQKVAAVIP 60

Query: 61  GKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGN-DSFTLEWVDSNQGYDGLKNFYGPGGK 119
           GKTVGDVIKQY+ELEEDVSDIEAGLIPIPGY + D+FTLEW ++NQGYDG +++Y PGGK
Sbjct: 61  GKTVGDVIKQYRELEEDVSDIEAGLIPIPGYSSSDAFTLEWFNNNQGYDGFRHYYTPGGK 120

Query: 120 RGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQK 179
           R ++ R S+QERKKGVPWTEEEHRQFLMGL+K+GKGDWRNISRNFVTTRTPTQVASHAQK
Sbjct: 121 RTTAARSSEQERKKGVPWTEEEHRQFLMGLQKYGKGDWRNISRNFVTTRTPTQVASHAQK 180

Query: 180 YFNRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMS 239
           YF RQ TGGKD+RRSSIHDITTVNL +T  S S + K  SP  S   +Q Q Q K V M+
Sbjct: 181 YFIRQSTGGKDERRSSIHDITTVNLPDTK-SPSPDEKKSSPDHSTTSLQSQPQQKMVGMA 239

Query: 240 NEQFNWKSQNE--GTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYS 297
               +WK QNE  G A +F+  NG   MAP CGISSYG +LQEQNLL G L G QF  Y+
Sbjct: 240 KGLIDWKPQNEGGGAAGVFSQANGNLLMAPLCGISSYGQRLQEQNLLRGTLPGYQFAPYN 299

Query: 298 AYFQMQSMQHQ 308
             FQMQ MQ Q
Sbjct: 300 LIFQMQPMQRQ 310

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84314023|gb|ABC55648.1| MYB transcription factor [Hevea brasiliensis]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/311 (71%), Positives = 253/311 (81%), Gaps = 4/311 (1%)

Query: 1   MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP 60
           M+RGIEILSPASYL+NSNWLF E++ TKWTP+ENKQFENALA+YDKD PDRW KVAA+IP
Sbjct: 1   MDRGIEILSPASYLQNSNWLFPETRATKWTPEENKQFENALALYDKDEPDRWQKVAAVIP 60

Query: 61  GKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGN-DSFTLEWVDSNQGYDGLKNFYGPGGK 119
           GKTVGDVIKQY+ELEEDVSDIEAGLIPIPGY + D+FTLEW ++NQGYDG +++Y PGGK
Sbjct: 61  GKTVGDVIKQYRELEEDVSDIEAGLIPIPGYSSSDAFTLEWFNNNQGYDGFRHYYTPGGK 120

Query: 120 RGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQK 179
           R ++ R S+QERKKGVPWTEEEHRQFLMGL+K+GKG+WRNISRNFVTTRTPTQVASHAQK
Sbjct: 121 RTTAARSSEQERKKGVPWTEEEHRQFLMGLQKYGKGNWRNISRNFVTTRTPTQVASHAQK 180

Query: 180 YFNRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMS 239
           YF RQ TGGKDKRRSSIHDITTVNL +T  S S + K  SP  S   +Q Q Q K V M+
Sbjct: 181 YFIRQSTGGKDKRRSSIHDITTVNLPDTK-SPSPDEKKSSPDHSTTSLQSQPQQKMVGMA 239

Query: 240 NEQFNWKSQNEG--TAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYS 297
               +WK QNEG   A +F+  NG   MAP CGISSYG KLQEQNLL G L G QF  Y+
Sbjct: 240 KGLIDWKPQNEGGRAAGVFSQANGNLLMAPLCGISSYGQKLQEQNLLRGTLPGYQFAPYN 299

Query: 298 AYFQMQSMQHQ 308
             FQM+ MQ Q
Sbjct: 300 LIFQMRPMQRQ 310

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440628|ref|XP_002278729.1| PREDICTED: uncharacterized protein LOC100263069 [Vitis vinifera]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/308 (71%), Positives = 250/308 (81%), Gaps = 1/308 (0%)

Query: 1   MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP 60
           M RGIE LSPASYL+NSNWLF ES GTKWT +ENK FENALA++DKDTPDRW+KVAAMIP
Sbjct: 1   MYRGIEFLSPASYLQNSNWLFSESNGTKWTHEENKLFENALALHDKDTPDRWLKVAAMIP 60

Query: 61  GKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKR 120
           GKTV DVIKQYK+LE+D+SDIEAGLIPIPGY   SF LEW ++NQG+DGLK FY PGGKR
Sbjct: 61  GKTVEDVIKQYKDLEDDISDIEAGLIPIPGYSTSSFKLEW-NNNQGFDGLKQFYFPGGKR 119

Query: 121 GSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180
           GS+TR +DQERKKGVPWTEEEHRQFLMGLKK+GKGDWRNISRNFVTTRTPTQVASHAQKY
Sbjct: 120 GSATRSTDQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179

Query: 181 FNRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMSN 240
           F RQL+ GKDKRRSSIHDITTVNL ++ + SS+N++P SP  S  V+QL Q P  V  + 
Sbjct: 180 FIRQLSVGKDKRRSSIHDITTVNLTDSKSPSSDNDRPSSPDCSTTVMQLPQYPNMVGTAK 239

Query: 241 EQFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYF 300
              + +  N+G AM+FN  NG  F+AP CGISS G KL EQ L  G LNG QF  +S+ F
Sbjct: 240 PMLDQRPPNQGAAMVFNPSNGNPFLAPPCGISSNGLKLHEQFLHRGTLNGPQFVPHSSIF 299

Query: 301 QMQSMQHQ 308
           QM S Q Q
Sbjct: 300 QMPSTQQQ 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248436|ref|NP_001240137.1| MYB transcription factor MYB51 [Glycine max] gi|255636083|gb|ACU18386.1| unknown [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/314 (70%), Positives = 250/314 (79%), Gaps = 11/314 (3%)

Query: 1   MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP 60
           MNRGIE+LSPASYL +SNWLFQES GT+WTPQENK FENALAV+DKDTPDRW+KVAA+IP
Sbjct: 1   MNRGIEVLSPASYLRSSNWLFQESLGTRWTPQENKLFENALAVFDKDTPDRWLKVAALIP 60

Query: 61  GKTVGDVIKQYKELEEDVSDIEAGLIPIPGY-GNDSFTLEWVDSNQGYDGLKNFYGPGGK 119
           GKTVGDVIKQY+ELEEDVS IE+G IP+PGY   DSFTLEWV+ NQG+DGL+ FYG  GK
Sbjct: 61  GKTVGDVIKQYRELEEDVSVIESGFIPLPGYTAADSFTLEWVN-NQGFDGLRQFYGVTGK 119

Query: 120 RGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQK 179
           RG+STRPS+QERKKGVPWT+EEHRQFLMGLKK+GKGDWRNISRNFVTTRTPTQVASHAQK
Sbjct: 120 RGASTRPSEQERKKGVPWTKEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQK 179

Query: 180 YFNRQLTGGKDKRRSSIHDITTVNLDETATSSSE-NNKPPSPSPSAAVI---QLQQQPKT 235
           YF RQL+GGKDK+RSSIHDIT VNL E  + SSE NN+P SP  S   +      Q+  T
Sbjct: 180 YFIRQLSGGKDKKRSSIHDITMVNLPEAKSPSSESNNRPYSPDHSVKDVNPPSQNQRLST 239

Query: 236 VDMSNEQFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPK-LQEQNLLGGNLNGSQFG 294
             +  ++ +WK   E   MLFNS NG  FM P CGISSYG K LQEQ      L+G QFG
Sbjct: 240 TMVIKQEHDWKLPCETVPMLFNSTNGNMFMTPLCGISSYGSKPLQEQYF----LSGCQFG 295

Query: 295 AYSAYFQMQSMQHQ 308
            Y    QM SMQ+Q
Sbjct: 296 PYDTIMQMPSMQNQ 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292386082|gb|ADE22269.1| MYB transcription factor [Malus x domestica]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/298 (70%), Positives = 248/298 (83%), Gaps = 5/298 (1%)

Query: 12  SYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQY 71
           SYL+NSNWLF+ES G +WT +ENK FENALA+YDKDTPDRW++VAAMIPGKTVGDVIKQY
Sbjct: 10  SYLQNSNWLFEESTGAEWTVEENKLFENALALYDKDTPDRWLRVAAMIPGKTVGDVIKQY 69

Query: 72  KELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQER 131
           KELEEDVSDIEAGLIPIPGY +++FT+EWV+ NQG+DGL+ FY  GGKR SSTRP+DQER
Sbjct: 70  KELEEDVSDIEAGLIPIPGYTSNNFTMEWVN-NQGFDGLEQFYSVGGKRSSSTRPADQER 128

Query: 132 KKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDK 191
           KKGVPWTEEEHRQFLMGLKK+GKGDWRNISRNFV TRTPTQVASHAQKYF RQLTGGKDK
Sbjct: 129 KKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLTGGKDK 188

Query: 192 RRSSIHDITTVNLDET--ATSSSENNKPPSPSPSAAVIQLQQQPKTVDMSNEQFNWKSQN 249
           RRSSIHDITT NL +   A+  S +  PPS   S+ ++Q   Q +   +++   +WKS +
Sbjct: 189 RRSSIHDITTANLPDVKPASPDSTSKSPPSSDLSSTLVQQPHQHQK--LASVSIDWKSPD 246

Query: 250 EGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYFQMQSMQH 307
           EG  M+F S NG  F+ PFCG+SS+ PKL+EQN L GNL+GSQ G Y+A F+MQSM++
Sbjct: 247 EGQQMVFGSANGNNFLGPFCGMSSHVPKLEEQNFLSGNLHGSQLGHYNACFEMQSMRY 304

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149727790|gb|ABR28332.1| MYB transcription factor MYB33 [Medicago truncatula]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/307 (67%), Positives = 238/307 (77%), Gaps = 1/307 (0%)

Query: 2   NRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPG 61
           NRG+E+LSPASY++NSNWLFQE+ G+KWT +ENK FENALA YDKDTPDRWI+VA MIPG
Sbjct: 8   NRGVEVLSPASYIQNSNWLFQENNGSKWTSEENKLFENALAYYDKDTPDRWIRVAEMIPG 67

Query: 62  KTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRG 121
           KTVGDVIKQY+ELEEDV  IEAGLIP+PGY   SFTL+W D+++GYD  K F   GGKR 
Sbjct: 68  KTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDW-DNSEGYDEFKQFCSVGGKRN 126

Query: 122 SSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181
            STRPS+QERKKGVPWTEEEHRQFL+GLKK+GKGDWRNISRNFVTTRTPTQVASHAQKYF
Sbjct: 127 GSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYF 186

Query: 182 NRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKTVDMSNE 241
            RQL+GGKDKRRSSIHDIT VNL ET + SSE+N   SP     V    Q      M  +
Sbjct: 187 IRQLSGGKDKRRSSIHDITVVNLQETKSPSSESNNLSSPDHLVKVPNQPQNNNLSGMVKQ 246

Query: 242 QFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPKLQEQNLLGGNLNGSQFGAYSAYFQ 301
           +F+WK  +EG + +FNS  G  F+AP CGISS+  K   +N+L    +G QF  +    Q
Sbjct: 247 EFDWKLPDEGMSFVFNSTKGNMFVAPSCGISSHESKSPGRNVLRSTHHGYQFSPFDTILQ 306

Query: 302 MQSMQHQ 308
           MQSMQHQ
Sbjct: 307 MQSMQHQ 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494943|ref|XP_003516340.1| PREDICTED: uncharacterized protein LOC100813517 [Glycine max]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/313 (68%), Positives = 244/313 (77%), Gaps = 10/313 (3%)

Query: 1   MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP 60
           MNRGIE+LSPASYL++SNWLFQES GT+WTPQENK FENALAV+DKDTPDRW+KVAA+IP
Sbjct: 30  MNRGIEVLSPASYLQSSNWLFQESSGTRWTPQENKLFENALAVFDKDTPDRWLKVAALIP 89

Query: 61  GKTVGDVIKQYKELEEDVSDIEAGLIPIPGY-GNDSFTLEWVDSNQGYDGLKNFYGPGGK 119
           GKTVGDVIKQY+ELE DVS IE+G IP+PGY   DSFTLEWV+ NQG+ GL+ FYG  GK
Sbjct: 90  GKTVGDVIKQYRELEADVSVIESGFIPVPGYTATDSFTLEWVN-NQGFGGLRQFYGVTGK 148

Query: 120 RGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQK 179
           RG+S RPS+QERKKGVPWT+EEHRQFLMGLKK+GKGDWRNISRNFV TRTPTQVASHAQK
Sbjct: 149 RGASNRPSEQERKKGVPWTKEEHRQFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQK 208

Query: 180 YFNRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVI---QLQQQPKTV 236
           YF RQL+GGKDK+RSSIHDIT VNL E  + SSE+N+P S   S   +   +  Q+  T 
Sbjct: 209 YFIRQLSGGKDKKRSSIHDITMVNLPEAKSLSSESNRPSSLDHSVKDVNPPRQNQKLSTT 268

Query: 237 DMSNEQFNWKSQNEGTAMLFNSMNGTAFMAPFCGISSYGPK-LQEQNLLGGNLNGSQFGA 295
            +  ++ +WK   E   M FNS N   FM   CGISS G K LQEQ      L+G QFG 
Sbjct: 269 MVIKQEHDWKLPCETVPMHFNSTNRNMFMTQLCGISSNGSKPLQEQYF----LSGCQFGP 324

Query: 296 YSAYFQMQSMQHQ 308
           Y    QMQSMQ+Q
Sbjct: 325 YGTIMQMQSMQNQ 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2042872	298	AT2G38090 [Arabidopsis thalian	0.935	0.966	0.608	7e-93
UNIPROTKB|Q8S9H7	307	DIVARICATA "Transcription fact	0.967	0.970	0.558	2.4e-85
TAIR|locus:2154508	288	AT5G58900 [Arabidopsis thalian	0.821	0.878	0.547	7e-70
TAIR|locus:2150149	267	AT5G01200 [Arabidopsis thalian	0.727	0.838	0.577	5.2e-65
TAIR|locus:2166459	277	AT5G05790 [Arabidopsis thalian	0.626	0.696	0.603	1e-59
TAIR|locus:2074723	263	AT3G11280 [Arabidopsis thalian	0.610	0.714	0.615	1.9e-58
TAIR|locus:2028461	314	AT1G49010 [Arabidopsis thalian	0.311	0.305	0.66	8.6e-45
TAIR|locus:2159607	298	AT5G08520 [Arabidopsis thalian	0.590	0.610	0.494	3.9e-44
TAIR|locus:2175478	215	AT5G04760 [Arabidopsis thalian	0.652	0.934	0.422	1.8e-39
TAIR|locus:2171711	337	AT5G23650 [Arabidopsis thalian	0.571	0.522	0.478	2.2e-38

TAIR|locus:2042872 AT2G38090 [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 190/312 (60%), Positives = 220/312 (70%)

Query:     1 MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP 60
             MNRGIE++SPA+YLE SNWLFQE++GTKWT +ENK+FENALA YDKDTPDRW +VAAM+P
Sbjct:     1 MNRGIEVMSPATYLETSNWLFQENRGTKWTAEENKKFENALAFYDKDTPDRWSRVAAMLP 60

Query:    61 GKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEW--VDSNQGYDG--LKNFY-- 114
             GKTVGDVIKQY+ELEEDVSDIEAGLIPIPGY +DSFTL+W   D   G +G  +  +Y  
Sbjct:    61 GKTVGDVIKQYRELEEDVSDIEAGLIPIPGYASDSFTLDWGGYDGASGNNGFNMNGYYFS 120

Query:   115 GPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVA 174
               GGKRGS+ R ++ ERKKGVPWTEEEHRQFLMGLKK+GKGDWRNI+RNFVTTRTPTQVA
Sbjct:   121 AAGGKRGSAARTAEHERKKGVPWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVA 180

Query:   175 SHAQKYFNRQLTGGKDKRRSSIHDITTVNLDETATXXXXXXXXXXXXXXAAVIQLQQQPK 234
             SHAQKYF RQ+ GGKDKRRSSIHDITTVN+ ++                         P 
Sbjct:   181 SHAQKYFIRQVNGGKDKRRSSIHDITTVNIPDSPDAAAADNATANAPCSP--------PS 232

Query:   235 TVDMSNEQFNWKSQN--EGTAMLFNSMNGTAFMAPFCGISS--YGPKLQEQXXXXXXXXX 290
                   E   W+ Q   + TA  F + N  AF     G+SS  Y  KLQEQ         
Sbjct:   233 VGGNQRETSEWEGQTLYDETAAAFYNQN--AFSETLLGMSSTPYMAKLQEQSFLNA---- 286

Query:   291 SQFGAYSAYFQM 302
             SQF +Y+AY QM
Sbjct:   287 SQFESYNAYLQM 298

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q8S9H7 DIVARICATA "Transcription factor DIVARICATA" [Antirrhinum majus (taxid:4151)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 172/308 (55%), Positives = 212/308 (68%)

Query:     5 IEILSPASYLENSNWLFQESKGT-KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKT 63
             +EIL+P+SY  +S+W  +ES+ T +WT  ENK FENALAV+D++TP+RW +VA  +PGKT
Sbjct:     1 MEILAPSSYFSSSSWFLEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKT 60

Query:    64 VGDVIKQYKELEEDVSDIEAGLIPIPGYGNDS-FTLEWVDSNQGYDGLKNFYGPGGKRGS 122
             VGDV++QYKELE+DVS IEAG +P+PGY   S FTLEW  S  G+DG K  YG GG++ S
Sbjct:    61 VGDVMRQYKELEDDVSSIEAGFVPVPGYSTSSPFTLEW-GSGHGFDGFKQSYGTGGRKSS 119

Query:   123 STRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN 182
             S RPS+QERKKGVPWTEEEH+ FLMGLKK+GKGDWRNISRNFV TRTPTQVASHAQKYF 
Sbjct:   120 SGRPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFI 179

Query:   183 RQLTGGKDKRRSSIHDITTVNLDETATXXXXXXXXXXXXXXAAVIQLQQQPKTVDMSNEQ 242
             RQL+GGKDKRR+SIHDITTVNL +  T              +     QQQ  +  +    
Sbjct:   180 RQLSGGKDKRRASIHDITTVNLSDNQTPSPDNKKPPSSPDHSMA---QQQTSSTSIHKLP 236

Query:   243 FNWKSQNEGTAMLFNSM--NGTAFMA-PFCGISSYGPKLQEQXXXXXXXXXSQFGAYSAY 299
             F W   +  T M F S   +G  F + PF G++SYG K+Q Q         +  G+ +  
Sbjct:   237 FQWDQTSNETIMGFASSGHHGNMFQSNPF-GMNSYGFKMQGQQMQRGGFCDTYLGSQNMA 295

Query:   300 FQMQSMQH 307
             FQMQS  H
Sbjct:   296 FQMQSGLH 303

GO:0009908 "flower development" evidence=IMP

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP

TAIR|locus:2154508 AT5G58900 [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 155/283 (54%), Positives = 186/283 (65%)

Query:     5 IEILSPA-SYLENSNWLFQESK--------GTKWTPQENKQFENALAVYDKDTPDRWIKV 55
             +E++ P+ S++   NWL +E+K        G  WT  ENK FENALAVYD +TPDRW KV
Sbjct:     1 MEVMRPSTSHVSGGNWLMEETKSGVAASGEGATWTAAENKAFENALAVYDDNTPDRWQKV 60

Query:    56 AAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGY-GNDSFTLEWVDSNQGYDGLKNFY 114
             AA+IPGKTV DVI+QY +LE DVS IEAGLIP+PGY  +  FTL+W     G +G K  +
Sbjct:    61 AAVIPGKTVSDVIRQYNDLEADVSSIEAGLIPVPGYITSPPFTLDWAGGGGGCNGFKPGH 120

Query:   115 GPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVA 174
                 KR  + R  + ERKKGVPWTEEEH+ FLMGLKK+GKGDWRNISRNFV TRTPTQVA
Sbjct:   121 QVCNKRSQAGRSPELERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVA 180

Query:   175 SHAQKYFNRQLTGGKDKRRSSIHDITTVNLDETATXXXXXXXXXXXXXXAAVIQLQQQPK 234
             SHAQKYF RQL+GGKDKRR+SIHDITTVNL+E A+              + V+  Q+   
Sbjct:   181 SHAQKYFIRQLSGGKDKRRASIHDITTVNLEEEASLETNKS--------SIVVGDQRSRL 232

Query:   235 TVDMSNEQFNW-KSQNEGT-AMLFNSMNGTAFMAPFCGISSYG 275
             T       F W ++ N GT A  FN   G A      G+ SYG
Sbjct:   233 TA------FPWNQTDNNGTQADAFNITIGNAIS----GVHSYG 265

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2150149 AT5G01200 [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 145/251 (57%), Positives = 173/251 (68%)

Query:     1 MNRGIEILSPASYLENSNWLFQESKGTKWTPQENKQFENALAVYD-KDTPDRWIKVAAMI 59
             M RG+ + SPA    N+NW+FQE +   WT +ENK+FE ALA  D KD  + W K+A +I
Sbjct:     6 MYRGVNMFSPA----NTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLI 61

Query:    60 PGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYD-GLKNF-YG-- 115
             PGKTV DVIK+YKELE+DVSDIEAGLIPIPGYG D+ +     +N  Y  GL+N  YG  
Sbjct:    62 PGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSA----ANSDYFFGLENSSYGYD 117

Query:   116 --PGGKRGS--------STRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFV 165
                GGKR S        S  P ++ERKKGVPWTE+EH +FLMGLKK+GKGDWRNI+++FV
Sbjct:   118 YVVGGKRSSPAMTDCFRSPMP-EKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFV 176

Query:   166 TTRTPTQVASHAQKYFNRQLTGGKDKRRSSIHDITTVNL---DETATXXXXXXXXXXXXX 222
             TTRTPTQVASHAQKYF RQLT GKDKRRSSIHDITTVN+   D +AT             
Sbjct:   177 TTRTPTQVASHAQKYFLRQLTDGKDKRRSSIHDITTVNIPDADASATATTADVALSPTPA 236

Query:   223 XAAVIQLQQQP 233
              +  + LQ  P
Sbjct:   237 NSFDVFLQPNP 247

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2166459 AT5G05790 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 125/207 (60%), Positives = 154/207 (74%)

Query:     5 IEILSPA-SYLENSNWLF--QES---KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAM 58
             +E L P  S++  S+  F  QE    + + WT +ENK+FE ALAVY  DTPDRW KVAAM
Sbjct:     1 METLHPLLSHVPTSDHRFVVQEMMCLQSSSWTKEENKKFERALAVYADDTPDRWFKVAAM 60

Query:    59 IPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDS-FTLEWVDSNQGYDGLKNFYGPG 117
             IPGKT+ DV++QY +LEED+ DIEAGL+PIPGY + +    + V S + +D  +    P 
Sbjct:    61 IPGKTISDVMRQYSKLEEDLFDIEAGLVPIPGYRSVTPCGFDQVVSPRDFDAYRKL--PN 118

Query:   118 GKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA 177
             G RG      DQ+R+KGVPWTEEEHR+FL+GL K+GKGDWRNISRNFV ++TPTQVASHA
Sbjct:   119 GARGF-----DQDRRKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHA 173

Query:   178 QKYFNRQLTGGKDKRRSSIHDITTVNL 204
             QKY+ RQL+G KDKRR SIHDITTVNL
Sbjct:   174 QKYYQRQLSGAKDKRRPSIHDITTVNL 200

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2074723 AT3G11280 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 128/208 (61%), Positives = 148/208 (71%)

Query:     5 IEILSPASYLENSNWLF--QE------SKGTKWTPQENKQFENALAVYDKDTPDRWIKVA 56
             +E L P S+L  S+  F  QE      S    WT +ENK FE ALA+Y +D+PDRW KVA
Sbjct:     1 METLHPFSHLPISDHRFVVQEMVSLHSSSSGSWTKEENKMFERALAIYAEDSPDRWFKVA 60

Query:    57 AMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGP 116
             +MIPGKTV DV+KQY +LEEDV DIEAG +PIPGY   S  L       G+D       P
Sbjct:    61 SMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPIPGYPAASSPL-------GFDTDMCRKRP 113

Query:   117 GGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASH 176
              G RGS     DQ+RKKGVPWTEEEHR+FL+GL K+GKGDWRNISRNFV ++TPTQVASH
Sbjct:   114 SGARGS-----DQDRKKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASH 168

Query:   177 AQKYFNRQLTGGKDKRRSSIHDITTVNL 204
             AQKY+ RQL+G KDKRR SIHDITT NL
Sbjct:   169 AQKYYQRQLSGAKDKRRPSIHDITTGNL 196

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2028461 AT1G49010 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.6e-45, Sum P(2) = 8.6e-45
 Identities = 66/100 (66%), Positives = 79/100 (79%)

Query:   104 NQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRN 163
             N G  G+ +    GG+ G S   ++QER+KG+PWTEEEHR FL+GL KFGKGDWR+ISRN
Sbjct:   107 NPGTSGISS--SNGGRSGGSR--AEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRN 162

Query:   164 FVTTRTPTQVASHAQKYFNRQLTGGKDKRRSSIHDITTVN 203
             FV +RTPTQVASHAQKYF R  +  +D+RRSSIHDITTVN
Sbjct:   163 FVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITTVN 202

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2159607 AT5G08520 [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 94/190 (49%), Positives = 129/190 (67%)

Query:    24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEA 83
             S G+ W+ +++  FE ALA    ++ +RW K+AA +PGK+V  + + Y+ L EDV+ IE+
Sbjct:     7 SDGSVWSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVEDVTRIES 66

Query:    84 GLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRP----SDQERKKGVPWTE 139
             G +P+P YG+     E  + + G +G  +  G     G S +     SDQER+KG+ WTE
Sbjct:    67 GCVPLPAYGSP----EGSNGHAGDEGASSKKGGNSHAGESNQAGKSKSDQERRKGIAWTE 122

Query:   140 EEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRRSSIHDI 199
             +EHR FL+GL K+GKGDWR+ISRNFV TRTPTQVASHAQKYF R  +  KD+RRSSIHDI
Sbjct:   123 DEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDI 182

Query:   200 TTVNLDETAT 209
             T+V   + +T
Sbjct:   183 TSVGNADVST 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2175478 AT5G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 92/218 (42%), Positives = 131/218 (60%)

Query:    27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLI 86
             ++WT  E+K FE AL ++ + +P+RW ++A  +  K+ G+V + Y+ L  DV +I++G +
Sbjct:     4 SQWTRSEDKMFEQALVLFPEGSPNRWERIADQLH-KSAGEVREHYEVLVHDVFEIDSGRV 62

Query:    87 PIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFL 146
              +P Y +DS       +  G+D        G K G S      ERK+G PWTE EH+ FL
Sbjct:    63 DVPDYMDDSAA-----AAAGWDSAGQI-SFGSKHGES------ERKRGTPWTENEHKLFL 110

Query:   147 MGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRRSSIHDITTVNLDE 206
             +GLK++GKGDWR+ISRN V TRTPTQVASHAQKYF RQ +  K+++RSSIHDITTV+   
Sbjct:   111 IGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVD--- 167

Query:   207 TATXXXXXXXXXXXXXXAAVIQLQQQPKTVDMSNEQFN 244
              AT               + +Q  QQ + +    +Q N
Sbjct:   168 -ATLAMPGSNMDWTGQHGSPVQAPQQQQIMSEFGQQLN 204

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2171711 AT5G23650 [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 90/188 (47%), Positives = 116/188 (61%)

Query:    20 LFQE-SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDV 78
             L QE S G+ W+  ++  FE ALA+Y+  T  RW K+A ++PGKT+  VI+ Y  L  DV
Sbjct:     3 LGQEISVGSSWSKDDDIAFEKALAIYNDKTEIRWKKIATVVPGKTLEQVIEHYNILARDV 62

Query:    79 SDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGG---KRGSSTRPSD---QERK 132
               IE+G + +P Y  D F LE  + N    G +     GG   K  S  +      Q+R+
Sbjct:    63 MLIESGCVRLPDY--DDF-LE--EPNHNAFGKERSILEGGNDRKYESKHKGKSKLKQKRR 117

Query:   133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKR 192
             +GVPW   EHRQFL GLKK+GKGDWR+ISR+ V TRT TQVASHAQKYF    +  K ++
Sbjct:   118 RGVPWKPFEHRQFLHGLKKYGKGDWRSISRHCVVTRTSTQVASHAQKYFAHINSEDKKRK 177

Query:   193 RSSIHDIT 200
             R SIHDIT
Sbjct:   178 RPSIHDIT 185

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S9H7	DIV_ANTMA	No assigned EC number	0.5830	0.9707	0.9739	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	6e-16
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	9e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-05
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	1e-05
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-05
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-04
cd11661	46	cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma	5e-04

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 70.5 bits (173), Expect = 6e-16
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 132 KKGVPWTEEEHRQFLMGLKKFGKGDW---RNISRNFVTTR-TPTQVASHAQKYFNRQ 184
           K  V WTE+ H +FL  ++K G  DW   + I    V    T  QVASH QKY  +Q
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183
              WTEEE    +  +KK+GK +W  I++     RT  Q     +     
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 53.0 bits (128), Expect = 9e-10
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181
           PWTEEE    L  +KK+GK +W  I++     RTP Q     +   
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 52.9 bits (128), Expect = 9e-10
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180
           PWT EE    +  +KK G G+W  I+++    RT  Q  +    Y
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNY 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74
           WT +E++    A+  Y K+    W K+A  +PG+T     ++++ L
Sbjct: 1  PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNL 44

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 135 VPWTEEEHRQFLMGLKKFGKGDWRNISR--NFVTTRTPTQ 172
             WT+EE    + G++K+G G+W  I +   FV  RT   
Sbjct: 1   RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVD 40

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74
            +WT +E++     +  Y K+    W K+A  +PG+T     ++++ L
Sbjct: 1  KGEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNL 46

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQY 71
           WTP+E++    A+  +       W K+A  +PG+T      ++
Sbjct: 3  PWTPEEDELLIEAVKKHGN---GNWSKIAKHLPGRTDNQCKNRW 43

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQV 173
           W+E E + F  GL+K+GK D+ +I ++F+  ++  ++
Sbjct: 2   WSESEAKLFEEGLRKYGK-DFHDIRQDFLPWKSVGEL 37

Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
PLN03212	249	Transcription repressor MYB5; Provisional	99.87
PLN03091	459	hypothetical protein; Provisional	99.86
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.8
KOG0724	335	consensus Zuotin and related molecular chaperones	99.57
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.54
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.49
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.46
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.43
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.22
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.2
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.18
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.14
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.98
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.97
PLN03212	249	Transcription repressor MYB5; Provisional	98.9
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.85
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.79
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.78
PLN03091	459	hypothetical protein; Provisional	98.69
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.62
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.59
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	98.43
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	98.4
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.75
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.73
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	97.69
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.62
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.5
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.28
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.15
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.84
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	96.77
KOG4167	907	consensus Predicted DNA-binding protein, contains	96.75
KOG0051	607	consensus RNA polymerase I termination factor, Myb	96.53
KOG4329	445	consensus DNA-binding protein [General function pr	96.52
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.45
KOG1194	534	consensus Predicted DNA-binding protein, contains	96.37
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	96.31
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.14
COG5147	512	REB1 Myb superfamily proteins, including transcrip	95.89
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.44
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	94.67
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.54
KOG4167	907	consensus Predicted DNA-binding protein, contains	94.38
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	94.02
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	93.47
PLN03162	526	golden-2 like transcription factor; Provisional	93.24
KOG0385	971	consensus Chromatin remodeling complex WSTF-ISWI,	92.89
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	92.48
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	91.53
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	91.16
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	90.3
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	89.73
KOG4468	782	consensus Polycomb-group transcriptional regulator	89.52
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	88.98
KOG4329	445	consensus DNA-binding protein [General function pr	88.72
PRK13923	170	putative spore coat protein regulator protein YlbO	88.51
PRK13923	170	putative spore coat protein regulator protein YlbO	85.95
KOG4282	345	consensus Transcription factor GT-2 and related pr	84.9
KOG1878	1672	consensus Nuclear receptor coregulator SMRT/SMRTER	83.87
KOG2656	445	consensus DNA methyltransferase 1-associated prote	83.32
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	83.24
KOG3841	455	consensus TEF-1 and related transcription factor,	83.02
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	81.26
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	80.72

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.87  E-value=1.3e-21  Score=180.34  Aligned_cols=111  Identities=16%  Similarity=0.221  Sum_probs=95.0

Q ss_pred             CCCccCCCCceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhC-CCCCHHHHHHHHHHhhhhhhhhccCCcCC
Q 021756           10 PASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMI-PGKTVGDVIKQYKELEEDVSDIEAGLIPI   88 (308)
Q Consensus        10 p~~~~~~~~~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~v-PGRT~~qc~~rY~~L~~Dv~~IEag~v~l   88 (308)
                      |||+.       ...+++.||+|||++|.++|++|+..   +|..||..+ +|||.+||++||.+.+.            
T Consensus        16 pcc~K-------~glKRg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~~g~gRT~KQCReRW~N~L~------------   73 (249)
T PLN03212         16 PCCTK-------MGMKRGPWTVEEDEILVSFIKKEGEG---RWRSLPKRAGLLRCGKSCRLRWMNYLR------------   73 (249)
T ss_pred             CCccc-------CCCcCCCCCHHHHHHHHHHHHHhCcc---cHHHHHHhhhcCCCcchHHHHHHHhhc------------
Confidence            66665       23467889999999999999999865   499999988 59999999999998875            


Q ss_pred             CCCCCCCccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCC
Q 021756           89 PGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTR  168 (308)
Q Consensus        89 P~y~~~~f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tR  168 (308)
                      |..                                         +.++||+|||++||+++..||. +|..||+ +|++|
T Consensus        74 P~I-----------------------------------------~kgpWT~EED~lLlel~~~~Gn-KWs~IAk-~LpGR  110 (249)
T PLN03212         74 PSV-----------------------------------------KRGGITSDEEDLILRLHRLLGN-RWSLIAG-RIPGR  110 (249)
T ss_pred             hhc-----------------------------------------ccCCCChHHHHHHHHHHHhccc-cHHHHHh-hcCCC
Confidence            321                                         1248999999999999999998 9999995 99999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 021756          169 TPTQVASHAQKYFNRQL  185 (308)
Q Consensus       169 T~~Q~~shaqky~~r~~  185 (308)
                      |+.||++||..++++..
T Consensus       111 TDnqIKNRWns~LrK~l  127 (249)
T PLN03212        111 TDNEIKNYWNTHLRKKL  127 (249)
T ss_pred             CHHHHHHHHHHHHhHHH
Confidence            99999999988776653

>PLN03091 hypothetical protein; Provisional

Probab=99.86  E-value=2.6e-21  Score=190.11  Aligned_cols=113  Identities=15%  Similarity=0.327  Sum_probs=97.7

Q ss_pred             cCCCccCCCCceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC-CCCHHHHHHHHHHhhhhhhhhccCCcC
Q 021756            9 SPASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP-GKTVGDVIKQYKELEEDVSDIEAGLIP   87 (308)
Q Consensus         9 ~p~~~~~~~~~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP-GRT~~qc~~rY~~L~~Dv~~IEag~v~   87 (308)
                      +||||.       +..+++.||+|||++|.++|.+|+..   .|..||..++ |||.+||++||.+.++           
T Consensus         4 ~~Cc~K-------qklrKg~WTpEEDe~L~~~V~kyG~~---nWs~IAk~~g~gRT~KQCRERW~NyLd-----------   62 (459)
T PLN03091          4 HSCCYK-------QKLRKGLWSPEEDEKLLRHITKYGHG---CWSSVPKQAGLQRCGKSCRLRWINYLR-----------   62 (459)
T ss_pred             CccCcC-------CCCcCCCCCHHHHHHHHHHHHHhCcC---CHHHHhhhhccCcCcchHhHHHHhccC-----------
Confidence            488887       55678899999999999999999975   4999999885 9999999999998764           


Q ss_pred             CCCCCCCCccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCC
Q 021756           88 IPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTT  167 (308)
Q Consensus        88 lP~y~~~~f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~t  167 (308)
                       |..                                         +.++||.|||++||+.+++||. +|..|| .+|++
T Consensus        63 -P~I-----------------------------------------kKgpWT~EED~lLLeL~k~~Gn-KWskIA-k~LPG   98 (459)
T PLN03091         63 -PDL-----------------------------------------KRGTFSQQEENLIIELHAVLGN-RWSQIA-AQLPG   98 (459)
T ss_pred             -Ccc-----------------------------------------cCCCCCHHHHHHHHHHHHHhCc-chHHHH-HhcCC
Confidence             211                                         1248999999999999999999 999999 59999


Q ss_pred             CCHHHHHHHHHHHHHHHhc
Q 021756          168 RTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       168 RT~~Q~~shaqky~~r~~s  186 (308)
                      ||+.||++||...++|...
T Consensus        99 RTDnqIKNRWnslLKKklr  117 (459)
T PLN03091         99 RTDNEIKNLWNSCLKKKLR  117 (459)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            9999999999987777543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.80  E-value=2.3e-19  Score=165.58  Aligned_cols=103  Identities=16%  Similarity=0.247  Sum_probs=91.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC-CCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccC
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP-GKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSN  104 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP-GRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~  104 (308)
                      ++.||+|||.+|.+.|..|+.+.   |..||..++ ||+.++||.||.+.+.            |.              
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~~---W~~i~k~~gl~R~GKSCRlRW~NyLr------------P~--------------   59 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKHN---GTALPKLAGLRRCGKSCRLRWTNYLR------------PD--------------   59 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCC---cchhhhhcCCCccchHHHHHhhcccC------------CC--------------
Confidence            58999999999999999999884   999999999 9999999999987653            21              


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          105 QGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       105 ~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                                                 .|++.||+|||+++++++.+||. +|..||+ ++||||+++|++||.-.++|.
T Consensus        60 ---------------------------ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA~-~LPGRTDNeIKN~Wnt~lkkk  110 (238)
T KOG0048|consen   60 ---------------------------LKRGNFSDEEEDLIIKLHALLGN-RWSLIAG-RLPGRTDNEVKNHWNTHLKKK  110 (238)
T ss_pred             ---------------------------ccCCCCCHHHHHHHHHHHHHHCc-HHHHHHh-hCCCcCHHHHHHHHHHHHHHH
Confidence                                       12358999999999999999999 9999995 999999999999998877776


Q ss_pred             hc
Q 021756          185 LT  186 (308)
Q Consensus       185 ~s  186 (308)
                      ..
T Consensus       111 l~  112 (238)
T KOG0048|consen  111 LL  112 (238)
T ss_pred             HH
Confidence            54

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=2.6e-15  Score=144.10  Aligned_cols=196  Identities=42%  Similarity=0.582  Sum_probs=152.8

Q ss_pred             CccCCCCceecCCCC-----CCCCHHHHHHHHHHHHHcCCC----CChhHHHHHhhCCC-CCHHHHHHHHHHhhhhhhhh
Q 021756           12 SYLENSNWLFQESKG-----TKWTPQENKQFENALAVYDKD----TPDRWIKVAAMIPG-KTVGDVIKQYKELEEDVSDI   81 (308)
Q Consensus        12 ~~~~~~~~~~~~~~~-----~~WT~EEdk~Le~Ala~y~~~----t~dRW~~IAa~vPG-RT~~qc~~rY~~L~~Dv~~I   81 (308)
                      +|..+..|.+++...     ..|+.++++.|++|+++|...    ++++|.++++.||+ ++..+++.+|..+..+|..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~   91 (335)
T KOG0724|consen   12 AYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIR   91 (335)
T ss_pred             HHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhh
Confidence            456667788876553     669999999999999999965    78999999999999 99999999999999999999


Q ss_pred             ccCCcCCCCCCCCC--------ccccccc--cCCCCCCCcccc-CC-CCCCCC--------CCCCCcccccCCCCCCHHH
Q 021756           82 EAGLIPIPGYGNDS--------FTLEWVD--SNQGYDGLKNFY-GP-GGKRGS--------STRPSDQERKKGVPWTEEE  141 (308)
Q Consensus        82 Eag~v~lP~y~~~~--------f~l~~~~--~~~~~dg~~~~~-~~-ggkR~~--------~~~~~~~erkKg~pWTeEE  141 (308)
                      +++.+++|.|....        +...|-.  ....|....... .. +.+...        .....+..++++.+|++.+
T Consensus        92 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (335)
T KOG0724|consen   92 ESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERE  171 (335)
T ss_pred             hccCCCccccCccccccccccccCCccccccccccCCCCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHH
Confidence            99999999997632        1111211  011222211000 00 011100        0122355677889999999


Q ss_pred             HHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHH-----HHHHHHhcCCCCCCCCCCCCCccccCCCC
Q 021756          142 HRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQ-----KYFNRQLTGGKDKRRSSIHDITTVNLDET  207 (308)
Q Consensus       142 ~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaq-----ky~~r~~s~~k~krr~Sihdit~~~~~~~  207 (308)
                      +++++.++.++|+++|..|+++++..|++.|+.+|++     +|+.+..+..+.++|.|+||++.++.-..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  242 (335)
T KOG0724|consen  172 RKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSIEDITTASEAED  242 (335)
T ss_pred             HHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchhhhhhccchhhh
Confidence            9999999999999999999999999999999999999     99999998889999999999998876555

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.54  E-value=9.2e-15  Score=107.76  Aligned_cols=52  Identities=44%  Similarity=0.677  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCCh---hhhhhhhcCCC-CHHHHHHHHHHHHHHH
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDW---RNISRNFVTTR-TPTQVASHAQKYFNRQ  184 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W---~~Iar~~V~tR-T~~Q~~shaqky~~r~  184 (308)
                      ++..||+|||.+||+||+.||.|+|   +.|+..++.+| |..||++|+||||.++
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~   57 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ   57 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            3568999999999999999999999   99996666678 9999999999999863

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.49  E-value=1.3e-13  Score=140.58  Aligned_cols=100  Identities=26%  Similarity=0.486  Sum_probs=87.3

Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCcccc
Q 021756           20 LFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLE   99 (308)
Q Consensus        20 ~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~   99 (308)
                      |++..+.+.||.+||.+|..||++|++..   |.+|-+.||||+..||++||.+.+.                   |   
T Consensus       354 LdPsikhg~wt~~ED~~L~~AV~~Yg~kd---w~k~R~~vPnRSdsQcR~RY~nvL~-------------------~---  408 (939)
T KOG0049|consen  354 LDPSVKHGRWTDQEDVLLVCAVSRYGAKD---WAKVRQAVPNRSDSQCRERYTNVLN-------------------R---  408 (939)
T ss_pred             cCccccCCCCCCHHHHHHHHHHHHhCccc---hhhHHHhcCCccHHHHHHHHHHHHH-------------------H---
Confidence            34677889999999999999999999875   9999999999999999999998874                   0   


Q ss_pred             ccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHH
Q 021756          100 WVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASH  176 (308)
Q Consensus       100 ~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sh  176 (308)
                                                     +-|.+.||-.||..|+.+|++||.|.|.+|| .++|.||..|..++
T Consensus       409 -------------------------------s~K~~rW~l~edeqL~~~V~~YG~g~WakcA-~~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  409 -------------------------------SAKVERWTLVEDEQLLYAVKVYGKGNWAKCA-MLLPKKTSRQLRRR  453 (939)
T ss_pred             -------------------------------hhccCceeecchHHHHHHHHHHccchHHHHH-HHccccchhHHHHH
Confidence                                           0112479999999999999999999999999 69999999775444

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.46  E-value=7.2e-14  Score=98.57  Aligned_cols=45  Identities=40%  Similarity=0.746  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcC-CCCHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVT-TRTPTQVASHAQKY  180 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~-tRT~~Q~~shaqky  180 (308)
                      .+||+|||.+|+++|.+||.++|..||. .|+ +||+.||++||++|
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK-RMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTTHHHHHHH-HHSSSSTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHHHH-HcCCCCCHHHHHHHHHhh
Confidence            4899999999999999999966999995 888 99999999999987

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.43  E-value=3.6e-13  Score=137.37  Aligned_cols=101  Identities=20%  Similarity=0.499  Sum_probs=88.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccCCC
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQG  106 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~~~  106 (308)
                      .+||+|||.+|..+|...-.+....|.+|-.+||||+..|.|-||...++            |+.               
T Consensus       306 keWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~Ld------------Psi---------------  358 (939)
T KOG0049|consen  306 KEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLD------------PSV---------------  358 (939)
T ss_pred             hhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccC------------ccc---------------
Confidence            68999999999999999888888889999999999999999999976654            211               


Q ss_pred             CCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          107 YDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       107 ~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                                                |.++||.+||.+|+.||.+||..+|.+|. ..||+|++.||+.+|.+.+
T Consensus       359 --------------------------khg~wt~~ED~~L~~AV~~Yg~kdw~k~R-~~vPnRSdsQcR~RY~nvL  406 (939)
T KOG0049|consen  359 --------------------------KHGRWTDQEDVLLVCAVSRYGAKDWAKVR-QAVPNRSDSQCRERYTNVL  406 (939)
T ss_pred             --------------------------cCCCCCCHHHHHHHHHHHHhCccchhhHH-HhcCCccHHHHHHHHHHHH
Confidence                                      13589999999999999999988999997 6999999999999876543

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.22  E-value=1.6e-11  Score=86.57  Aligned_cols=46  Identities=33%  Similarity=0.682  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC-CCCHHHHHHHHHHhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP-GKTVGDVIKQYKELE   75 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP-GRT~~qc~~rY~~L~   75 (308)
                      +.||.||+++|++||.+|+.+   +|..||..|| |||..||+.||..++
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            579999999999999999976   6999999999 999999999998863

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.20  E-value=5.7e-11  Score=86.85  Aligned_cols=42  Identities=19%  Similarity=0.479  Sum_probs=36.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           29 WTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        29 WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      ||.|||.+|..++..|+.    .|..||.+||.||..+|+.||...
T Consensus         1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~~Rt~~~~~~r~~~~   42 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN----DWKKIAEHLGNRTPKQCRNRWRNH   42 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-----HHHHHHHSTTS-HHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCc----CHHHHHHHHCcCCHHHHHHHHHHH
Confidence            999999999999999985    399999999669999999999983

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.18  E-value=3.6e-11  Score=82.08  Aligned_cols=46  Identities=30%  Similarity=0.547  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      .+||+||+.+|+.++..||.++|..|| ..+++||+.+|+++|..++
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia-~~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNNWEKIA-KELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence            479999999999999999955999999 5899999999999997764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.14  E-value=8e-11  Score=79.30  Aligned_cols=44  Identities=39%  Similarity=0.752  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY  180 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky  180 (308)
                      +||+||+++|+.++..||.++|..|| ..+++||..||+++|.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia-~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIA-KELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHH-hHcCCCCHHHHHHHHHHh
Confidence            59999999999999999955999999 589999999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.98  E-value=4.2e-10  Score=82.23  Aligned_cols=42  Identities=36%  Similarity=0.707  Sum_probs=36.1

Q ss_pred             CCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756          137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY  180 (308)
Q Consensus       137 WTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky  180 (308)
                      ||+||+.+|+.++++||. +|..|| .+++.||+.||+.||.++
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~~Rt~~~~~~r~~~~   42 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIA-EHLGNRTPKQCRNRWRNH   42 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHH-HHSTTS-HHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHH-HHHCcCCHHHHHHHHHHH
Confidence            999999999999999997 999999 488889999999999763

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.97  E-value=1.7e-09  Score=73.77  Aligned_cols=46  Identities=26%  Similarity=0.603  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELE   75 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~   75 (308)
                      ..||+||+++|..+++.|+..   +|..||..||+||..||+.+|..+.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~---~w~~Ia~~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            579999999999999999942   3999999999999999999998864

>PLN03212 Transcription repressor MYB5; Provisional

Probab=98.90  E-value=2.4e-09  Score=99.57  Aligned_cols=49  Identities=29%  Similarity=0.485  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhc-CCCCHHHHHHHHHHHHH
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFV-TTRTPTQVASHAQKYFN  182 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V-~tRT~~Q~~shaqky~~  182 (308)
                      ++.+||+|||++|+.+|++||..+|..||+ .+ ++||+.||+.||.+|+.
T Consensus        24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~~g~gRT~KQCReRW~N~L~   73 (249)
T PLN03212         24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPK-RAGLLRCGKSCRLRWMNYLR   73 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcccHHHHHH-hhhcCCCcchHHHHHHHhhc
Confidence            456999999999999999999889999996 55 69999999999998863

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.85  E-value=7e-09  Score=69.69  Aligned_cols=44  Identities=30%  Similarity=0.671  Sum_probs=40.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        28 ~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      .||.||++.|..+++.|+..   +|..||..||+||..||+.+|..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~---~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcC---CHHHHHhHcCCCCHHHHHHHHHHh
Confidence            49999999999999999953   499999999999999999999865

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.79  E-value=2e-08  Score=103.19  Aligned_cols=104  Identities=22%  Similarity=0.467  Sum_probs=85.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCcccccccc
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDS  103 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~  103 (308)
                      ...+.||+||++.|...+..++.+    |..|+.+| ||.+.+|+.||..+..            +              
T Consensus       382 ~~rg~wt~ee~eeL~~l~~~~g~~----W~~Ig~~l-gr~P~~crd~wr~~~~------------~--------------  430 (607)
T KOG0051|consen  382 NKRGKWTPEEEEELKKLVVEHGND----WKEIGKAL-GRMPMDCRDRWRQYVK------------C--------------  430 (607)
T ss_pred             cccCCCCcchHHHHHHHHHHhccc----HHHHHHHH-ccCcHHHHHHHHHhhc------------c--------------
Confidence            378999999999999999999875    99999999 8999999999988653            0              


Q ss_pred             CCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHh-------hh-------C-----CC------Chh
Q 021756          104 NQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLK-------KF-------G-----KG------DWR  158 (308)
Q Consensus       104 ~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~-------ky-------G-----~G------~W~  158 (308)
                                   |.+            .++.+||.||.+.||..|+       .|       |     .+      .|.
T Consensus       431 -------------g~~------------~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt  485 (607)
T KOG0051|consen  431 -------------GSK------------RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWT  485 (607)
T ss_pred             -------------ccc------------cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchh
Confidence                         001            1235899999999999995       33       1     11      699


Q ss_pred             hhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          159 NISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       159 ~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                      .|+ +.++||+..||+.+|.+...+-
T Consensus       486 ~vs-e~~~TR~~~qCr~Kw~kl~~~~  510 (607)
T KOG0051|consen  486 LVS-EMLGTRSRIQCRYKWYKLTTSP  510 (607)
T ss_pred             hhh-HhhcCCCcchHHHHHHHHHhhH
Confidence            999 5999999999999999886654

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=9.5e-09  Score=103.30  Aligned_cols=103  Identities=24%  Similarity=0.489  Sum_probs=88.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccC
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSN  104 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~  104 (308)
                      .++.|+.-||+.|..++.+||.+.   |.+||+.++-+|.+||..||.+.++            |..             
T Consensus         6 kggvwrntEdeilkaav~kyg~nq---ws~i~sll~~kt~rqC~~rw~e~ld------------p~i-------------   57 (617)
T KOG0050|consen    6 KGGVWRNTEDEVLKAAVMKYGKNQ---WSRIASLLNRKTARQCKARWEEWLD------------PAI-------------   57 (617)
T ss_pred             ecceecccHHHHHHHHHHHcchHH---HHHHHHHHhhcchhHHHHHHHHHhC------------HHH-------------
Confidence            578899999999999999999874   9999999999999999999987654            211             


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          105 QGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       105 ~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                                                  +..-|+.|||..||.+.+.+.. .|..|+-  +-+||..||-.||++..-..
T Consensus        58 ----------------------------~~tews~eederlLhlakl~p~-qwrtIa~--i~gr~~~qc~eRy~~ll~~~  106 (617)
T KOG0050|consen   58 ----------------------------KKTEWSREEDERLLHLAKLEPT-QWRTIAD--IMGRTSQQCLERYNNLLDVY  106 (617)
T ss_pred             ----------------------------hhhhhhhhHHHHHHHHHHhcCC-ccchHHH--HhhhhHHHHHHHHHHHHHHH
Confidence                                        1246999999999999999998 9999994  78999999999988765554


Q ss_pred             hc
Q 021756          185 LT  186 (308)
Q Consensus       185 ~s  186 (308)
                      .+
T Consensus       107 ~s  108 (617)
T KOG0050|consen  107 VS  108 (617)
T ss_pred             Hh
Confidence            43

>PLN03091 hypothetical protein; Provisional

Probab=98.69  E-value=1.5e-08  Score=100.65  Aligned_cols=49  Identities=20%  Similarity=0.470  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhc-CCCCHHHHHHHHHHHHH
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFV-TTRTPTQVASHAQKYFN  182 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V-~tRT~~Q~~shaqky~~  182 (308)
                      ++++||+|||++|+.+|++||.++|..||+ .+ ++||+.||+.||.+|+.
T Consensus        13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk-~~g~gRT~KQCRERW~NyLd   62 (459)
T PLN03091         13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWINYLR   62 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcCCHHHHhh-hhccCcCcchHhHHHHhccC
Confidence            345899999999999999999999999996 55 59999999999997743

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.62  E-value=6.5e-08  Score=98.36  Aligned_cols=106  Identities=22%  Similarity=0.424  Sum_probs=90.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccc
Q 021756           23 ESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVD  102 (308)
Q Consensus        23 ~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~  102 (308)
                      ....+.|+..||..|..++..|+...   |.+||+.+.-++..||..||.+.++            |.            
T Consensus        17 ~~k~gsw~~~EDe~l~~~vk~l~~nn---ws~vas~~~~~~~kq~~~rw~~~ln------------p~------------   69 (512)
T COG5147          17 KRKGGSWKRTEDEDLKALVKKLGPNN---WSKVASLLISSTGKQSSNRWNNHLN------------PQ------------   69 (512)
T ss_pred             eecCCCCCCcchhHHHHHHhhccccc---HHHHHHHhcccccccccchhhhhhc------------hh------------
Confidence            45677999999999999998888654   9999999988999999999854332            11            


Q ss_pred             cCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 021756          103 SNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       103 ~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~  182 (308)
                                                   .+...|++||++.++..-..+|. .|..|+ .++++||..||..+|.+.+.
T Consensus        70 -----------------------------lk~~~~~~eed~~li~l~~~~~~-~wstia-~~~d~rt~~~~~ery~~~~~  118 (512)
T COG5147          70 -----------------------------LKKKNWSEEEDEQLIDLDKELGT-QWSTIA-DYKDRRTAQQCVERYVNTLE  118 (512)
T ss_pred             -----------------------------cccccccHHHHHHHHHHHHhcCc-hhhhhc-cccCccchHHHHHHHHHHhh
Confidence                                         11247999999999999999999 899999 69999999999999998887


Q ss_pred             HHhc
Q 021756          183 RQLT  186 (308)
Q Consensus       183 r~~s  186 (308)
                      ...+
T Consensus       119 ~~~s  122 (512)
T COG5147         119 DLSS  122 (512)
T ss_pred             hhhc
Confidence            7755

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.59  E-value=3.2e-08  Score=91.58  Aligned_cols=47  Identities=23%  Similarity=0.434  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVT-TRTPTQVASHAQKYFN  182 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~-tRT~~Q~~shaqky~~  182 (308)
                      +|||.|||.+|...|++||.|+|..|++ ..+ +|+..+||.||-+|.+
T Consensus        10 GpWt~EED~~L~~~V~~~G~~~W~~i~k-~~gl~R~GKSCRlRW~NyLr   57 (238)
T KOG0048|consen   10 GPWTQEEDLTQIRSIKSFGKHNGTALPK-LAGLRRCGKSCRLRWTNYLR   57 (238)
T ss_pred             CCCChHHHHHHHHHHHHhCCCCcchhhh-hcCCCccchHHHHHhhcccC
Confidence            6999999999999999999999999995 788 9999999999999843

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=98.43  E-value=2.9e-07  Score=100.57  Aligned_cols=131  Identities=28%  Similarity=0.551  Sum_probs=91.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHH-------HHHHhhhh----hhhhccCCcCCCCCCC--
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIK-------QYKELEED----VSDIEAGLIPIPGYGN--   93 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~-------rY~~L~~D----v~~IEag~v~lP~y~~--   93 (308)
                      ..||+.|-..|.+|+++||.+.   ...||..|.|||..+|+.       ||.++ .|    +..||.|...+-....  
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~---~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~-~~~~~~~~~ie~~e~~~~~~~~~~  900 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRND---IKSIASEMEGKTEEEVERYAKVFWERYKEL-NDYDRIIKNIERGEARISRKDEIM  900 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhH---HHHHHHHhcCCCHHHHHHHHHHHHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999764   999999999999999954       44443 22    3567776533211100  


Q ss_pred             -------CCccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhh---
Q 021756           94 -------DSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRN---  163 (308)
Q Consensus        94 -------~~f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~---  163 (308)
                             +.+..+|....-.|.                      ..++..+|+|||+.||..+.+||-|+|..|...   
T Consensus       901 ~~~~~k~~~~~~p~~~l~~~~~----------------------~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~  958 (1033)
T PLN03142        901 KAIGKKLDRYKNPWLELKIQYG----------------------QNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRT  958 (1033)
T ss_pred             HHHHHHHHHccCcHHHceeecC----------------------CCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence                   112223332111111                      012347999999999999999999999999532   


Q ss_pred             --------hcCCCCHHHHHHHHHHHHHH
Q 021756          164 --------FVTTRTPTQVASHAQKYFNR  183 (308)
Q Consensus       164 --------~V~tRT~~Q~~shaqky~~r  183 (308)
                              |+.+||+.++..|+.-.+.-
T Consensus       959 ~~~f~fd~~~~srt~~~~~~r~~~l~~~  986 (1033)
T PLN03142        959 SPLFRFDWFVKSRTPQELARRCDTLIRL  986 (1033)
T ss_pred             CCceeeehhhccCCHHHHHHHHHHHHHH
Confidence                    38899999999998754433

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.40  E-value=2.8e-07  Score=91.35  Aligned_cols=48  Identities=27%  Similarity=0.596  Sum_probs=46.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                      .||.+|+-+||+|+.+||-|+|..|| ++|++||..+|+.||.|+|...
T Consensus        74 ~WtadEEilLLea~~t~G~GNW~dIA-~hIGtKtkeeck~hy~k~fv~s  121 (438)
T KOG0457|consen   74 SWTADEEILLLEAAETYGFGNWQDIA-DHIGTKTKEECKEHYLKHFVNS  121 (438)
T ss_pred             CCChHHHHHHHHHHHHhCCCcHHHHH-HHHcccchHHHHHHHHHHHhcC
Confidence            69999999999999999999999999 6999999999999999999875

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.75  E-value=2.4e-05  Score=78.44  Aligned_cols=42  Identities=31%  Similarity=0.619  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQ  178 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaq  178 (308)
                      .+||.+|-.+||+||+.||. +|.+||+ +|++||+.||.-|+-
T Consensus       280 k~WS~qE~~LLLEGIe~ygD-dW~kVA~-HVgtKt~EqCIl~FL  321 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGD-DWDKVAR-HVGTKTKEQCILHFL  321 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhh-hHHHHHH-HhCCCCHHHHHHHHH
Confidence            38999999999999999999 9999996 999999999999864

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.73  E-value=5.6e-05  Score=75.31  Aligned_cols=47  Identities=23%  Similarity=0.374  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      -...||++|+-+|.+|+..||-|+   |..||.+|+.||..||++||.+.
T Consensus        71 ~~~~WtadEEilLLea~~t~G~GN---W~dIA~hIGtKtkeeck~hy~k~  117 (438)
T KOG0457|consen   71 LDPSWTADEEILLLEAAETYGFGN---WQDIADHIGTKTKEECKEHYLKH  117 (438)
T ss_pred             CCCCCChHHHHHHHHHHHHhCCCc---HHHHHHHHcccchHHHHHHHHHH
Confidence            346799999999999999999996   99999999999999999999775

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.69  E-value=3.6e-05  Score=74.29  Aligned_cols=47  Identities=23%  Similarity=0.652  Sum_probs=44.6

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR  183 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r  183 (308)
                      .|+.+|+-+|++++...|-|+|..|| .+|+.|+..+|++||-|++..
T Consensus        65 ~WgadEEllli~~~~TlGlGNW~dIa-dyiGsr~kee~k~HylK~y~e  111 (432)
T COG5114          65 GWGADEELLLIECLDTLGLGNWEDIA-DYIGSRAKEEIKSHYLKMYDE  111 (432)
T ss_pred             CcCchHHHHHHHHHHhcCCCcHHHHH-HHHhhhhhHHHHHHHHHHHhh
Confidence            59999999999999999999999999 599999999999999998874

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.62  E-value=0.00019  Score=53.05  Aligned_cols=47  Identities=15%  Similarity=0.342  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhH---HHHHhhCC-CC-CHHHHHHHHHHhh
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRW---IKVAAMIP-GK-TVGDVIKQYKELE   75 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW---~~IAa~vP-GR-T~~qc~~rY~~L~   75 (308)
                      +-.||.||..+|..||..||.+.   |   ..|++.+. .+ |..||+.|+++..
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~---~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPD---WATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCc---ccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999854   9   99999875 35 9999999988753

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.50  E-value=0.00011  Score=75.22  Aligned_cols=42  Identities=26%  Similarity=0.558  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA  177 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha  177 (308)
                      +..||++|.-+||+||.+||. +|.+|| .+|++||..||..|+
T Consensus       253 ~~~WT~qE~lLLLE~ie~y~d-dW~kVa-~hVg~ks~eqCI~kF  294 (506)
T KOG1279|consen  253 RPNWTEQETLLLLEAIEMYGD-DWNKVA-DHVGTKSQEQCILKF  294 (506)
T ss_pred             CCCccHHHHHHHHHHHHHhcc-cHHHHH-hccCCCCHHHHHHHH
Confidence            457999999999999999999 999999 599999999999984

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.28  E-value=0.0003  Score=70.82  Aligned_cols=46  Identities=28%  Similarity=0.508  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      ....||++|.-+|..+|..|+.+    |.+||.+|+.||++||+-||-.|
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDd----W~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDD----WDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhh----HHHHHHHhCCCCHHHHHHHHHcC
Confidence            44589999999999999999976    99999999999999999999876

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.15  E-value=0.00063  Score=69.73  Aligned_cols=49  Identities=33%  Similarity=0.524  Sum_probs=45.0

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           22 QESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      .++.+..||.+|.-+|..+|..|+.+    |.+||.+|.+||..||+-|+..|
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~dd----W~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGDD----WNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhccc----HHHHHhccCCCCHHHHHHHHHhc
Confidence            34567899999999999999999976    99999999999999999999876

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.84  E-value=0.018  Score=52.63  Aligned_cols=113  Identities=14%  Similarity=0.174  Sum_probs=74.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC---CCCHHHHHHHHHHhhhh--hhhhccCCcCCCCCCCCCccccccc
Q 021756           28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIP---GKTVGDVIKQYKELEED--VSDIEAGLIPIPGYGNDSFTLEWVD  102 (308)
Q Consensus        28 ~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP---GRT~~qc~~rY~~L~~D--v~~IEag~v~lP~y~~~~f~l~~~~  102 (308)
                      +|++++|-+|++||..-..     -+.|+.-|+   .-|..++.+||..|+-|  ++.+-...                 
T Consensus         1 rW~~~DDl~Li~av~~~~~-----L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~-----------------   58 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTND-----LESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAA-----------------   58 (199)
T ss_pred             CCCchhhHHHHHHHHHhcC-----HHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHH-----------------
Confidence            5999999999999986432     667777665   46999999999999865  22221110                 


Q ss_pred             cCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCC--CChhhhhh----hhcCCCCHHHHHHH
Q 021756          103 SNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGK--GDWRNISR----NFVTTRTPTQVASH  176 (308)
Q Consensus       103 ~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~--G~W~~Iar----~~V~tRT~~Q~~sh  176 (308)
                       +......       ..         .......+||.+|+++|.........  ..+.+|=.    -|-++||+.+...|
T Consensus        59 -m~~l~p~-------~~---------~~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~H  121 (199)
T PF13325_consen   59 -MRNLHPE-------LI---------AAIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDH  121 (199)
T ss_pred             -HHhCCcc-------hh---------hcccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHH
Confidence             0000000       00         00112358999999999987665533  25666621    36789999999999


Q ss_pred             HHH
Q 021756          177 AQK  179 (308)
Q Consensus       177 aqk  179 (308)
                      |+.
T Consensus       122 W~l  124 (199)
T PF13325_consen  122 WRL  124 (199)
T ss_pred             HHH
Confidence            984

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=96.77  E-value=0.00099  Score=67.91  Aligned_cols=51  Identities=22%  Similarity=0.525  Sum_probs=46.1

Q ss_pred             cCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756          132 KKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR  183 (308)
Q Consensus       132 kKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r  183 (308)
                      +|++-|+..||..|-.++.+||+..|+.|+ ..+.-+|+.||+.+|.++..-
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~-sll~~kt~rqC~~rw~e~ldp   55 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIA-SLLNRKTARQCKARWEEWLDP   55 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHH-HHHhhcchhHHHHHHHHHhCH
Confidence            356789999999999999999998999999 699999999999999887543

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=96.75  E-value=0.0022  Score=67.71  Aligned_cols=44  Identities=43%  Similarity=0.704  Sum_probs=40.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYK   72 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~   72 (308)
                      ..-.||..|.++|.+||..|.++    +..|+.+|+|||+.||.+.|.
T Consensus       618 gSd~WTp~E~~lF~kA~y~~~KD----F~~v~km~~~KtVaqCVeyYY  661 (907)
T KOG4167|consen  618 GSDKWTPLERKLFNKALYTYSKD----FIFVQKMVKSKTVAQCVEYYY  661 (907)
T ss_pred             CcccccHHHHHHHHHHHHHhccc----HHHHHHHhccccHHHHHHHHH
Confidence            45679999999999999999987    999999999999999999874

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=96.53  E-value=0.0076  Score=62.82  Aligned_cols=46  Identities=24%  Similarity=0.520  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~  182 (308)
                      .+.||+||++.|-..+.++|. +|..|++  .-+|.|..|+.+|..|..
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~--~lgr~P~~crd~wr~~~~  429 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGN-DWKEIGK--ALGRMPMDCRDRWRQYVK  429 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcc-cHHHHHH--HHccCcHHHHHHHHHhhc
Confidence            357999999999999999998 9999995  679999999999987744

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=96.52  E-value=0.0032  Score=62.01  Aligned_cols=49  Identities=35%  Similarity=0.568  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTG  187 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~s~  187 (308)
                      ..||++|=+.|.+||+.||| ++..|.++-|+||+...|-.+   |+..+++.
T Consensus       278 ~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVey---YYlWKkSe  326 (445)
T KOG4329|consen  278 SGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVEY---YYLWKKSE  326 (445)
T ss_pred             ccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHHH---HHHhhcCc
Confidence            46999999999999999999 999999999999999999987   45555543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.45  E-value=0.004  Score=60.45  Aligned_cols=47  Identities=15%  Similarity=0.347  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhh
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELE   75 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~   75 (308)
                      ...|+.+|+-+|.+++...|.++   |+-||.+|+.|+.++|+.||.+..
T Consensus        63 ~e~WgadEEllli~~~~TlGlGN---W~dIadyiGsr~kee~k~HylK~y  109 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGN---WEDIADYIGSRAKEEIKSHYLKMY  109 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCc---HHHHHHHHhhhhhHHHHHHHHHHH
Confidence            35699999999999999999986   999999999999999999998764

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=96.37  E-value=0.044  Score=55.45  Aligned_cols=49  Identities=8%  Similarity=-0.045  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~  185 (308)
                      ..||.+|.-+++.+|++||+ ...-|+ ..|+..+-.|+.+-...|-+|+.
T Consensus       370 ~~~~T~~~la~v~~I~~~~~-~~~pl~-wrik~t~cmee~e~l~~~~Rr~m  418 (534)
T KOG1194|consen  370 RCFDTPAALALIDNIKRKHH-MCVPLV-WRVKQTKCMEENEILNEEARRQM  418 (534)
T ss_pred             cccCcHHHHHHHHHHHHhcc-Ccchhh-hHhcCcchhhHHHHHHHHHHHHH
Confidence            47999999999999999999 778888 57888999999999888877773

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=96.31  E-value=0.0073  Score=50.85  Aligned_cols=49  Identities=31%  Similarity=0.624  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhCC---CChhhhhhh-----------hcCCCCHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGK---GDWRNISRN-----------FVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~---G~W~~Iar~-----------~V~tRT~~Q~~shaqky~~  182 (308)
                      +..||+|||+.||..+.+||-   |.|..|...           |+.+||+..+..|+.-.+.
T Consensus        49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (118)
T PF09111_consen   49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK  111 (118)
T ss_dssp             -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence            347999999999999999998   899999742           3899999999999874443

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.14  E-value=0.0077  Score=46.63  Aligned_cols=54  Identities=19%  Similarity=0.406  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHHHHHHHH------cC--CCC--ChhHHHHHhhCC----CCCHHHHHHHHHHhhhhhhh
Q 021756           27 TKWTPQENKQFENALAV------YD--KDT--PDRWIKVAAMIP----GKTVGDVIKQYKELEEDVSD   80 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~------y~--~~t--~dRW~~IAa~vP----GRT~~qc~~rY~~L~~Dv~~   80 (308)
                      ..||.+|...|..++..      |+  ...  ..-|..||..|.    .||+.||+.+|..|..+-..
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            46999999999998877      21  111  236999999985    59999999999999875443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=95.89  E-value=0.014  Score=60.10  Aligned_cols=57  Identities=21%  Similarity=0.380  Sum_probs=47.8

Q ss_pred             ceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhh
Q 021756           19 WLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVS   79 (308)
Q Consensus        19 ~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~   79 (308)
                      ++..--....|+.|||+.|..+-..++.    +|..||.++||||..+|.++|.+++.+..
T Consensus        65 ~lnp~lk~~~~~~eed~~li~l~~~~~~----~wstia~~~d~rt~~~~~ery~~~~~~~~  121 (512)
T COG5147          65 HLNPQLKKKNWSEEEDEQLIDLDKELGT----QWSTIADYKDRRTAQQCVERYVNTLEDLS  121 (512)
T ss_pred             hhchhcccccccHHHHHHHHHHHHhcCc----hhhhhccccCccchHHHHHHHHHHhhhhh
Confidence            3444567789999999999987777765    49999999999999999999999887543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.44  E-value=0.032  Score=43.14  Aligned_cols=51  Identities=24%  Similarity=0.452  Sum_probs=35.0

Q ss_pred             CCCHHHHHHHHHHHhh------hCC-----C--Chhhhhhhh---cCCCCHHHHHHHHHHHHHHHhc
Q 021756          136 PWTEEEHRQFLMGLKK------FGK-----G--DWRNISRNF---VTTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       136 pWTeEE~~llL~gl~k------yG~-----G--~W~~Iar~~---V~tRT~~Q~~shaqky~~r~~s  186 (308)
                      .||.+|-..||..+..      ++.     +  -|..||..+   =..||+.||+.+|.....+...
T Consensus         3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999887      321     1  499999533   1379999999999877666554

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=94.67  E-value=0.05  Score=54.08  Aligned_cols=67  Identities=15%  Similarity=0.409  Sum_probs=51.6

Q ss_pred             cccccc--CCCccCCCCceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756            4 GIEILS--PASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus         4 ~~~~~~--p~~~~~~~~~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      +||++-  |.+-+-+|.-|-.....-.||.+|...|=+||.++|-+    +..|+.++|.|..+|++-.|.+-
T Consensus       341 e~E~veen~~ar~vts~t~g~~~~~~~Ws~~e~ekFYKALs~wGtd----F~LIs~lfP~R~RkqIKaKfi~E  409 (507)
T COG5118         341 EMEVVEENPFARIVTSSTFGKKKGALRWSKKEIEKFYKALSIWGTD----FSLISSLFPNRERKQIKAKFIKE  409 (507)
T ss_pred             HHHHhhccchhheeecccccCCCCCCcccHHHHHHHHHHHHHhcch----HHHHHHhcCchhHHHHHHHHHHH
Confidence            456654  44423233333344566789999999999999999976    99999999999999999998753

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.54  E-value=0.051  Score=41.35  Aligned_cols=53  Identities=11%  Similarity=0.296  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcCC---C----------CChhHHHHHhhCC-----CCCHHHHHHHHHHhhhhh
Q 021756           26 GTKWTPQENKQFENALAVYDK---D----------TPDRWIKVAAMIP-----GKTVGDVIKQYKELEEDV   78 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~---~----------t~dRW~~IAa~vP-----GRT~~qc~~rY~~L~~Dv   78 (308)
                      ...||.+|...|...|..|..   +          ...-|+.||+.|.     .||..||++.|.++...+
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999998641   1          1345999999884     499999999999987654

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=94.38  E-value=0.13  Score=54.89  Aligned_cols=41  Identities=24%  Similarity=0.368  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA  177 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha  177 (308)
                      +-||..|-++|-.||-.|-+ |+..|+ +.|+++|..||-.+|
T Consensus       620 d~WTp~E~~lF~kA~y~~~K-DF~~v~-km~~~KtVaqCVeyY  660 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYSK-DFIFVQ-KMVKSKTVAQCVEYY  660 (907)
T ss_pred             ccccHHHHHHHHHHHHHhcc-cHHHHH-HHhccccHHHHHHHH
Confidence            46999999999999999999 999999 699999999999884

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=94.02  E-value=0.061  Score=40.74  Aligned_cols=49  Identities=24%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             CCCCHHHHHHHHHHHhhh---C---CC--ChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKF---G---KG--DWRNISRNFVTTRTPTQVASHAQKYFNR  183 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~ky---G---~G--~W~~Iar~~V~tRT~~Q~~shaqky~~r  183 (308)
                      +++|+|||.+|+.-|+.+   |   .|  -|+.+++..+..+|-..-++||-|.+..
T Consensus         3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~   59 (65)
T PF08914_consen    3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRG   59 (65)
T ss_dssp             ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT--
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            589999999999999765   3   23  4999997665578888889987665443

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=93.47  E-value=0.088  Score=46.63  Aligned_cols=47  Identities=21%  Similarity=0.394  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHHHHHhhh---CCC---ChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKF---GKG---DWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       136 pWTeEE~~llL~gl~ky---G~G---~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                      .||+|||.+|-+.|-+|   |.-   ....+++  --+||+..|.-||+.|.+++
T Consensus         6 AWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~--~L~RTsAACGFRWNs~VRkq   58 (161)
T TIGR02894         6 AWTHEEDLLLAETVLRHIREGSTQLSAFEEVGR--ALNRTAAACGFRWNAYVRKQ   58 (161)
T ss_pred             ccccHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHcccHHHhcchHHHHHHHH
Confidence            79999999999998888   431   3555654  46999999999999998876

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PLN03162 golden-2 like transcription factor; Provisional

Probab=93.24  E-value=0.26  Score=49.07  Aligned_cols=55  Identities=33%  Similarity=0.427  Sum_probs=42.6

Q ss_pred             cccCCCCCCHHHHHHHHHHHhhhCCC--Chhhhhh-hhcCCCCHHHHHHHHHHHHHHH
Q 021756          130 ERKKGVPWTEEEHRQFLMGLKKFGKG--DWRNISR-NFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       130 erkKg~pWTeEE~~llL~gl~kyG~G--~W~~Iar-~~V~tRT~~Q~~shaqky~~r~  184 (308)
                      .+|.+..||.|=|++|+++|.+.|-.  .=+.|-+ .-|++=|-.+|+||.|||...+
T Consensus       233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~r  290 (526)
T PLN03162        233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHR  290 (526)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhc
Confidence            45567789999999999999999931  2444542 1178899999999999996554

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]

Probab=92.89  E-value=0.21  Score=53.83  Aligned_cols=137  Identities=25%  Similarity=0.327  Sum_probs=79.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHH-------HHHHhhhh---hhhhccCCcCCCCCCCCC
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIK-------QYKELEED---VSDIEAGLIPIPGYGNDS   95 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~-------rY~~L~~D---v~~IEag~v~lP~y~~~~   95 (308)
                      -..||+.|-..|.+|..+|+.++   -+.||+.+-| |+.||..       |+.+|.+-   +..||.|...+..-..  
T Consensus       795 ft~w~k~df~~fi~a~eKygr~d---i~~ia~~~e~-~~eev~~y~rvfwer~~el~d~ek~~~~ie~~e~~i~r~~~--  868 (971)
T KOG0385|consen  795 FTNWTKRDFNQFIKANEKYGRDD---IENIAAEVEG-TPEEVGEYARVFWERLEELSDIEKIIYQIERGEKRIQRGDS--  868 (971)
T ss_pred             ccchhhhhHHHHHHHhhccCcch---hhhhHHhhcC-CHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHhhhhHHHH--
Confidence            35699999999999999999875   7899999988 9999943       22232211   2345655433211000  


Q ss_pred             ccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCC---hhhhhh----------
Q 021756           96 FTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGD---WRNISR----------  162 (308)
Q Consensus        96 f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~---W~~Iar----------  162 (308)
                      .....+. .  .+.+        |....-+ .....-++.+.|++|++.|+.+|.++|-..   |..+..          
T Consensus       869 ~~~~ld~-k--~~~~--------k~p~~l~-i~~~~nk~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frf  936 (971)
T KOG0385|consen  869 IKKALDD-K--IARY--------KAPHQLR-IQYGTNKGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRF  936 (971)
T ss_pred             HHHHHhh-h--Hhhh--------cCchhee-eeeccccCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCccccc
Confidence            0000000 0  0000        0000000 000111567899999999999999999753   555531          


Q ss_pred             -hhcCCCCHHHHHHHHHHH
Q 021756          163 -NFVTTRTPTQVASHAQKY  180 (308)
Q Consensus       163 -~~V~tRT~~Q~~shaqky  180 (308)
                       -|+.+||...+..|+.-+
T Consensus       937 dw~~~sRt~~el~Rr~ntl  955 (971)
T KOG0385|consen  937 DWFIKSRTAMELQRRCNTL  955 (971)
T ss_pred             ceeeehhhHHHHHhcCCee
Confidence             136778887777665543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=92.48  E-value=0.28  Score=41.31  Aligned_cols=53  Identities=19%  Similarity=0.332  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC------------CCCHHHHHHHHHHhhh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP------------GKTVGDVIKQYKELEE   76 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP------------GRT~~qc~~rY~~L~~   76 (308)
                      ..+..+|.|||.-|...+..||-++++.|++|-+.|-            .||+.++.+|-.-|+.
T Consensus        47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (118)
T PF09111_consen   47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK  111 (118)
T ss_dssp             SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred             CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence            3568899999999999999999988889999988763            7999999999877754

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=91.53  E-value=0.2  Score=51.20  Aligned_cols=42  Identities=26%  Similarity=0.543  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA  177 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha  177 (308)
                      ..|+.-|-.+|.++|+|||+ ++..|..+|+|=++-+.|-.+|
T Consensus       286 EEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyY  327 (693)
T KOG3554|consen  286 EEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYY  327 (693)
T ss_pred             hhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHH
Confidence            46999999999999999999 9999999999999999998875

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=91.16  E-value=0.88  Score=34.48  Aligned_cols=49  Identities=18%  Similarity=0.285  Sum_probs=39.3

Q ss_pred             CCCHHHHHHHHHHHhhh-----CCC-----------Chhhhhhhh----cCCCCHHHHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKF-----GKG-----------DWRNISRNF----VTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       136 pWTeEE~~llL~gl~ky-----G~G-----------~W~~Iar~~----V~tRT~~Q~~shaqky~~r~  184 (308)
                      .||.+|-..|+..|.+|     |+.           -|..|+..+    .+.||..|++..|.++-...
T Consensus         4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            69999999999999998     421           499998644    34799999999998875544

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=90.30  E-value=0.47  Score=47.37  Aligned_cols=45  Identities=24%  Similarity=0.516  Sum_probs=40.5

Q ss_pred             ccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756          131 RKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA  177 (308)
Q Consensus       131 rkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha  177 (308)
                      +++..+||.+|-.+|-.||..+|- ++..|| .++|+|.-.||+-.+
T Consensus       362 ~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs-~lfP~R~RkqIKaKf  406 (507)
T COG5118         362 KKGALRWSKKEIEKFYKALSIWGT-DFSLIS-SLFPNRERKQIKAKF  406 (507)
T ss_pred             CCCCCcccHHHHHHHHHHHHHhcc-hHHHHH-HhcCchhHHHHHHHH
Confidence            444568999999999999999999 999999 699999999999854

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=89.73  E-value=0.74  Score=35.91  Aligned_cols=50  Identities=20%  Similarity=0.407  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHHHHHHHc------C-CC--CChhHHHHHhhCC-----CCCHHHHHHHHHHhhhh
Q 021756           28 KWTPQENKQFENALAVY------D-KD--TPDRWIKVAAMIP-----GKTVGDVIKQYKELEED   77 (308)
Q Consensus        28 ~WT~EEdk~Le~Ala~y------~-~~--t~dRW~~IAa~vP-----GRT~~qc~~rY~~L~~D   77 (308)
                      .||.++++.|..++...      + .+  .+.-|..|++.|.     ..|..||..||..|..+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            59999999999877542      1 11  1456999999885     36899999999988765

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=89.52  E-value=0.48  Score=49.69  Aligned_cols=51  Identities=25%  Similarity=0.445  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhh---------hhhcCCCCHHHHHHHHHHHHHHHh
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNIS---------RNFVTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Ia---------r~~V~tRT~~Q~~shaqky~~r~~  185 (308)
                      ...||-.|..-|..||+.+|+ ++.+|-         ..-+..+|.-||+-||.+..+++.
T Consensus        88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~  147 (782)
T KOG4468|consen   88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN  147 (782)
T ss_pred             ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence            358999999999999999999 999992         123777899999998876666653

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=88.98  E-value=1.1  Score=34.89  Aligned_cols=45  Identities=31%  Similarity=0.479  Sum_probs=32.8

Q ss_pred             CCCHHHHHHHHHHHhhh---C----CC-----Chhhhhhhh----cCCCCHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKF---G----KG-----DWRNISRNF----VTTRTPTQVASHAQKY  180 (308)
Q Consensus       136 pWTeEE~~llL~gl~ky---G----~G-----~W~~Iar~~----V~tRT~~Q~~shaqky  180 (308)
                      .||+++++.||+.+...   |    .+     .|..|+..|    -...|..||++|+..+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l   61 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL   61 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence            39999999999998664   2    11     488888544    2346788999998643

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=88.72  E-value=0.63  Score=46.31  Aligned_cols=47  Identities=26%  Similarity=0.571  Sum_probs=39.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHH-HhhCCCCCHHHHHHHHHHh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKV-AAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~I-Aa~vPGRT~~qc~~rY~~L   74 (308)
                      ..-..|+.+|=+.|+..|..||++    +..| |..|+.|++.+|+..|..-
T Consensus       275 d~l~~wsEeEcr~FEegl~~yGKD----F~lIr~nkvrtRsvgElVeyYYlW  322 (445)
T KOG4329|consen  275 DDLSGWSEEECRNFEEGLELYGKD----FHLIRANKVRTRSVGELVEYYYLW  322 (445)
T ss_pred             cccccCCHHHHHHHHHHHHHhccc----HHHHHhcccccchHHHHHHHHHHh
Confidence            344679999999999999999997    7666 5678999999999987543

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=88.51  E-value=0.52  Score=42.21  Aligned_cols=48  Identities=15%  Similarity=0.203  Sum_probs=37.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhh-----cCCCCHHHHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNF-----VTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~-----V~tRT~~Q~~shaqky~~r~  184 (308)
                      .||+|||.+|-+.|-.|++..=..++ .|     .-.||..+|.-||+.+.+++
T Consensus         7 awt~e~d~llae~vl~~i~eg~tql~-afe~~g~~L~rt~aac~fRwNs~vrk~   59 (170)
T PRK13923          7 AWTQERDGLLAEVVLRHIREGGTQLK-AFEEVGDALKRTAAACGFRWNSVVRKQ   59 (170)
T ss_pred             hhhhHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHhhhHHHHHhHHHHHHHHH
Confidence            69999999998888888763333343 22     57899999999998777654

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=85.95  E-value=0.89  Score=40.75  Aligned_cols=49  Identities=8%  Similarity=0.209  Sum_probs=38.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCC---hhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTP---DRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~---dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      +...||.|||.+|...|-.|.....   +-.+.++..| +||...|-.||...
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~   55 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSV   55 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHH
Confidence            4567999999999988888775432   3466777777 79999999999544

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=84.90  E-value=1.6  Score=42.45  Aligned_cols=52  Identities=19%  Similarity=0.394  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHhhh----CCC-----Chhhhhhhh---cCCCCHHHHHHHHHHHHHHHhc
Q 021756          135 VPWTEEEHRQFLMGLKKF----GKG-----DWRNISRNF---VTTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~ky----G~G-----~W~~Iar~~---V~tRT~~Q~~shaqky~~r~~s  186 (308)
                      ..|+.+|=+.||.+..+.    ..|     .|..||+++   ---||+.||+..|.+..++.+.
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~  118 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK  118 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            579999999999987664    333     499999744   3349999999999876666544

>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]

Probab=83.87  E-value=1.2  Score=50.93  Aligned_cols=42  Identities=31%  Similarity=0.408  Sum_probs=35.2

Q ss_pred             HHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021756          143 RQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       143 ~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~s  186 (308)
                      +.--.||..+|+ +|..|+. .|.+.|..||.+.+-||-.|.+.
T Consensus       363 ev~k~Glveh~R-~~aai~p-~vvt~tes~c~na~a~~~~r~N~  404 (1672)
T KOG1878|consen  363 EVAKSGLVEHGR-EWAAILP-KVVTKTESQCKNAYAKYKNRHNL  404 (1672)
T ss_pred             hhhhccchhhhh-hHHHhcC-ccceecccchhhHHHhhhhhhcc
Confidence            355667888889 9999995 89999999999888888877754

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=83.32  E-value=0.79  Score=45.92  Aligned_cols=46  Identities=20%  Similarity=0.377  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhh-----CCC-CCHHHHHHHHHHhhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAM-----IPG-KTVGDVIKQYKELEE   76 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~-----vPG-RT~~qc~~rY~~L~~   76 (308)
                      ..||.||..-|-++...|+.    ||..||..     ++. ||++|.++||..+..
T Consensus       131 n~WskeETD~LF~lck~fDL----Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r  182 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDL----RFFVIADRYDNQQYKKSRTVEDLKERYYSVCR  182 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCe----eEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence            56999999999999999997    48888776     665 999999999987654

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=83.24  E-value=1.6  Score=38.80  Aligned_cols=50  Identities=10%  Similarity=0.194  Sum_probs=38.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCC---ChhHHHHHhhCCCCCHHHHHHHHHHhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDT---PDRWIKVAAMIPGKTVGDVIKQYKELE   75 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t---~dRW~~IAa~vPGRT~~qc~~rY~~L~   75 (308)
                      +.-.||.|||.+|-..|-.|=...   -.-++.|+..| +||..-|-=||...+
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~V   55 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYV   55 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHH
Confidence            445799999999988887764322   23478999998 799999977776654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]

Probab=83.02  E-value=2  Score=42.96  Aligned_cols=54  Identities=31%  Similarity=0.477  Sum_probs=41.7

Q ss_pred             cCCCCCCHHHHHHHHHHHhhh-------------C--CCChhhhhhhhc-----CCCCHHHHHHHHHHHHHHHhc
Q 021756          132 KKGVPWTEEEHRQFLMGLKKF-------------G--KGDWRNISRNFV-----TTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       132 kKg~pWTeEE~~llL~gl~ky-------------G--~G~W~~Iar~~V-----~tRT~~Q~~shaqky~~r~~s  186 (308)
                      ...+-|+++=++.|++||..|             |  -|+=..||| ++     .|||..||.+|-|-.-+|..+
T Consensus        74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIar-YIKlrtgktRTrKQVSSHIQVlarrk~r  147 (455)
T KOG3841|consen   74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVLARRKLR  147 (455)
T ss_pred             ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            334579999999999999998             3  245677886 54     578899999999877666544

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=81.26  E-value=2.2  Score=47.86  Aligned_cols=47  Identities=21%  Similarity=0.557  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR  183 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r  183 (308)
                      .||.-+=..|+.|..+||+.+-..|| ..|.++|+.+|+.+++-|..|
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~-~~~~~k~~~ev~~y~~~f~~~  872 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIA-SEMEGKTEEEVERYAKVFWER  872 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHH-HHhcCCCHHHHHHHHHHHHHh
Confidence            49999999999999999999999999 589999999999776544433

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=80.72  E-value=4.1  Score=30.81  Aligned_cols=49  Identities=12%  Similarity=0.207  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCC-----CCChhHHHHHhhCC-CCCHHHHHHHHHHhh
Q 021756           27 TKWTPQENKQFENALAVYDK-----DTPDRWIKVAAMIP-GKTVGDVIKQYKELE   75 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~-----~t~dRW~~IAa~vP-GRT~~qc~~rY~~L~   75 (308)
                      ...|.|||.+|.+-|+.+..     ....-|..+|+.-| ..|-.--++||.+-+
T Consensus         3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L   57 (65)
T PF08914_consen    3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHL   57 (65)
T ss_dssp             ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            46899999999999976532     22456999999988 788888899997654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	308
2cjj_A	93	Crystal Structure Of The Myb Domain Of The Rad Tran		3e-14
2m2e_A	73	Solution Nmr Structure Of The Sant Domain Of Human		7e-09
4eef_G	74	Crystal Structure Of The Designed Inhibitor Protein		1e-05
2cu7_A	72	Solution Structure Of The Sant Domain Of Human Kiaa		8e-05

>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus Length = 93

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGL 85
          G  W+ +ENK FE ALAVYDKDTPDRW  VA  + G+T  +V K Y+ L ED+  IE+G 
Sbjct: 8  GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGK 67
Query: 86 IPIPGY 91
          +P P Y
Sbjct: 68 VPFPNY 73

>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2, Northeast Structural Genomics Consortium Target Hr8254a Length = 73

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAG 84
          T WT +E K  E AL  Y  +TP+RW K+A  +PG+T  D +K+YKEL E V   +A 
Sbjct: 4  TPWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 61

>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein F-Hb80.4 In Complex With The 1918 Influenza Virus Hemagglutinin. Length = 74

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELE 75
          G  W   EN  FE AL+  +KDTPDRW KVA  + G+T  +V K Y ELE
Sbjct: 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY-ELE 68

>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915 Protein Length = 72

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDK 191
           V WT EE   F  GL KFG+  W  IS+  + +RT  QV S+A++YF  ++  G DK
Sbjct: 10  VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDK 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
2cjj_A	93	Radialis; plant development, DNA-binding protein,	4e-34
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	7e-27
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	3e-05
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	3e-26
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	2e-04
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	9e-22
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	9e-07
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	1e-19
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	6e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-15
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	2e-14
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	8e-14
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-06
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	4e-13
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-11
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	5e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-10
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	5e-10
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	4e-09
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	6e-09
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	6e-08
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	3e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	3e-07
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	3e-07
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	1e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-06
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	7e-06
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	2e-05
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	5e-05
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	4e-05
2crg_A	70	Metastasis associated protein MTA3; transcription	4e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	4e-04
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	5e-04

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score =  118 bits (298), Expect = 4e-34
 Identities = 36/81 (44%), Positives = 48/81 (59%)

Query: 22  QESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDI 81
               G  W+ +ENK FE ALAVYDKDTPDRW  VA  + G+T  +V K Y+ L ED+  I
Sbjct: 4   TRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI 63

Query: 82  EAGLIPIPGYGNDSFTLEWVD 102
           E+G +P P Y      ++  +
Sbjct: 64  ESGKVPFPNYRTTGGNMKTDE 84

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 99.5 bits (248), Expect = 7e-27
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 127 SDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLT 186
           S       V WT EE   F  GL KFG+  W  IS+  + +RT  QV S+A++YF  ++ 
Sbjct: 2   SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVK 59

Query: 187 GGKDKRRSS 195
            G DK   +
Sbjct: 60  CGLDKETPN 68

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 22 QESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTV 64
                KWT +E + FE  LA + +     W K++ +I  +TV
Sbjct: 5  SSGYSVKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTV 43

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 98.0 bits (244), Expect = 3e-26
 Identities = 24/68 (35%), Positives = 32/68 (47%)

Query: 11 ASYLENSNWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQ 70
              + S+       G  W   EN  FE AL+  +KDTPDRW KVA  + G+T  +V K 
Sbjct: 5  DDDDKGSHMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKH 64

Query: 71 YKELEEDV 78
          Y+      
Sbjct: 65 YELEHHHH 72

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 127 SDQERKKGVPWTEEEHRQFLMGLKKFGKGD---WRNISRNFVTTRTPTQVASH 176
               R  G PW   E+  F + L    K     W+ +++  V  RTP +V  H
Sbjct: 13  MASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQY-VKGRTPEEVKKH 64

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 86.1 bits (213), Expect = 9e-22
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 23 ESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVS 79
           S    WT  + K  E AL  Y + + D W K+A  +P K+  D I +YK L    S
Sbjct: 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 44.9 bits (106), Expect = 9e-07
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 117 GGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGD---WRNISRNFVTTRTPTQV 173
           G    S +   ++ R    PWT+ + +   + L+++ +G    W  I+R  V +++    
Sbjct: 1   GSSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDC 59

Query: 174 ASH 176
            + 
Sbjct: 60  IAR 62

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 80.4 bits (198), Expect = 1e-19
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 129 QERKKGVPWTEEEHRQFLMGLKKFGKGD-----WRNISRNFVTTRTPTQVASHAQKYFNR 183
                   WT EE ++    L K+   +     W+ I+   +  RT  QVAS  QKYF +
Sbjct: 3   SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE-LGNRTAKQVASQVQKYFIK 61

Query: 184 QLTGGKDK 191
               G   
Sbjct: 62  LTKAGIPV 69

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 22 QESKGTKWTPQENKQFENALAVYDKDTPD--RWIKVAAMIPGKTVGDVIKQYKE 73
            S    WT +E K+ E  L  Y  +  +  RW K+A  +  +T   V  Q ++
Sbjct: 4  GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQK 57

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 68.9 bits (169), Expect = 1e-15
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTG 187
            WT +E    L  +   G G+W++++ N + T+T  +   H  KYF+   +G
Sbjct: 10  SWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSGPSSG 60

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 65.9 bits (161), Expect = 2e-14
 Identities = 11/55 (20%), Positives = 19/55 (34%)

Query: 127 SDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181
           S         W  +E    +   +  G G+W +I+      RT  +   H  K +
Sbjct: 2   SSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 65.0 bits (158), Expect = 8e-14
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 122 SSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181
                S +E      WTEEE      GL + G+ +W  I+R  V ++T +Q  +    Y 
Sbjct: 4   HHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYK 61

Query: 182 NRQ 184
            RQ
Sbjct: 62  KRQ 64

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQY 71
              WT +E    +  L  + ++    W  +A M+  KTV      Y
Sbjct: 15 YFQGWTEEEMGTAKKGLLEHGRN----WSAIARMVGSKTVSQCKNFY 57

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 62.8 bits (152), Expect = 4e-13
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 22 QESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDI 81
            S   +WT ++  Q   ++  +   TP RW K+A  + G++V DV  + K+L++ V+  
Sbjct: 4  GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCS 62

Query: 82 EAGLIPIPGYG 92
            G++  P  G
Sbjct: 63 -PGMVSGPSSG 72

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 117 GGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASH 176
           G    S T    +    G  WTE+E    L  L+ +   DW  +S   V +RT  +   H
Sbjct: 1   GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILH 58

Query: 177 AQKY 180
             + 
Sbjct: 59  FLRL 62

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 22 QESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDI 81
            S G +WT QE      AL +Y  D    W KV+  +  +T  + I  +  L      I
Sbjct: 14 GASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVGSRTQDECILHFLRLP-----I 64

Query: 82 EAGLIPIPGYGNDS 95
          E   +     G  S
Sbjct: 65 EDPYLENSDSGPSS 78

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 127 SDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNF-VTTRTPTQ 172
           S     K   WT EE      G++K+G+G+W  IS+N+    RT   
Sbjct: 4   STTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVM 50

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 57.9 bits (138), Expect = 5e-10
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 2/112 (1%)

Query: 124 TRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183
            R  +  +K    WT EE    +  ++K+G+ D++ IS   +  ++  QV +    Y  R
Sbjct: 123 YRLPEVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRR 180

Query: 184 QLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSAAVIQLQQQPKT 235
                  +   + H     N           +             +      
Sbjct: 181 FNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAPVLDVRYA 232

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 126 PSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFV-TTRTPTQ 172
           P     +K   W  EE +    G++K+G+G+W  I  ++    RT   
Sbjct: 2   PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVM 49

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 52.0 bits (124), Expect = 6e-09
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 4/76 (5%)

Query: 123 STRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNF---VTTRTPTQVASHAQK 179
           S    D +R+   P++  E    +  ++K G G WR++          RT   +     K
Sbjct: 2   SHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDK-WK 60

Query: 180 YFNRQLTGGKDKRRSS 195
                      +RR  
Sbjct: 61  TLVHTAKISPQQRRGE 76

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 47.8 bits (114), Expect = 6e-08
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQY 71
           WT  E + F++    + K+    +  +A+ +  K+V D +  Y
Sbjct: 14 VWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYY 53

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 121 GSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASH 176
           GSS   S  +R+    WT+ E   F     +  K ++  I+  ++  ++      +
Sbjct: 1   GSSG--SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLY 52

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 123 STRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNF---VTTRTPTQVASHAQK 179
           S RP   +R+   P+T  E    +  ++  G G WR++       V  RT   +    + 
Sbjct: 20  SKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKT 79

Query: 180 YFNRQLTGGKDKRRSSI 196
             +      + +R + +
Sbjct: 80  LVHTASIAPQQRRGAPV 96

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQY 71
           W+ QE + F      + K+    +  +A+ +  KTV + +  Y
Sbjct: 45 MWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYY 84

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 129 QERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASH 176
           ++R+    W+E+E   F     +  K ++  I+ +F+  +T  +   +
Sbjct: 38  KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLY 83

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNF-VTTRTPTQ 172
            WT EE      G++K+G+G+W  IS+N+    RT   
Sbjct: 4   KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVM 41

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 122 SSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNF---VTTRTPTQVASHAQ 178
            S R    +R+   P++  E    +  ++  G G WR++          RT   +    +
Sbjct: 5   KSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWK 64

Query: 179 KYFNRQLTGGKDKRRSSI 196
              +      + +R   +
Sbjct: 65  TLVHTASIAPQQRRGEPV 82

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 41.9 bits (99), Expect = 7e-06
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 132 KKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFV-TTRTPTQ 172
           K+   W  EE +    G++K+G+G+W  I  ++    RT   
Sbjct: 1   KRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVM 41

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 123 STRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQV 173
           S+  S  E+     WTE+E ++F+ GL+++GK ++  I +  +  +   ++
Sbjct: 2   SSGSSGIEKC----WTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGEL 47

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 28 KWTPQENKQFENALAVYDKDTPDRWIKVAA-MIPGKTVGDVIKQY 71
           WT  E K+F   L  Y K+    + ++   ++P K  G++I  Y
Sbjct: 11 CWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFY 51

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 131 RKKGVPWTEEEHRQFLMGLKKFG------KGDWRNISRNFVTTRTPTQVASHAQKYF 181
           +K  V WT E H +FL  +   G      K     ++ + +T      VASH QK+ 
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRE---NVASHLQKFR 57

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRRS 194
            W+  E   F   L+K+GK D+ +I ++F+  ++ T +  +   Y  +       ++RS
Sbjct: 10  EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEY--YYMWKTTDRYVQQKRS 65

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNF---VTTRTPTQVASHAQKYFNRQLTGGKDKR 192
           P++  E    +  ++  G G WR++          RT   +    +   +      + +R
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 193 RSSI 196
              +
Sbjct: 62  GEPV 65

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 122 SSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181
              R  +  +K    WT EE    +  ++K+G+ D++ IS   +  ++  QV +    Y 
Sbjct: 368 EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYR 425

Query: 182 NRQLTGGKDKRRSSIHDITTVNLDETATSSSENNKPPSPSPSA 224
            R              +      +    S+ +  K P  S   
Sbjct: 426 RRF----NIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKM 464

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.93
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.92
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.92
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.91
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.91
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.88
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.87
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.79
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.78
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.72
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.63
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.63
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.61
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.53
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.53
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.53
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.52
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.52
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.49
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	99.48
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.47
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.46
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	99.46
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.46
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.46
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.46
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.43
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.39
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.39
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.38
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.37
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.36
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.36
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.32
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.31
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.31
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.99
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.31
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.29
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.29
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.28
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.28
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.25
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.24
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.23
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.23
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.22
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.22
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.19
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.17
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.17
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	99.16
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.13
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.12
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.11
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.11
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.1
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.07
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	99.07
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.05
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.04
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.03
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.02
2crg_A	70	Metastasis associated protein MTA3; transcription	98.98
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.95
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.83
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.33
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.76
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.76
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	98.69
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.68
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	98.65
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	98.61
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.59
2crg_A	70	Metastasis associated protein MTA3; transcription	98.55
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.52
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.48
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.41
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.33
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	97.86
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.8
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.7
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.64
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.56
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	97.5
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	97.47
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.42
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.38
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.21
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.67
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	96.63
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.32
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.16
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.84
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	95.81
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.63
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	90.16

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.93  E-value=2.1e-25  Score=180.91  Aligned_cols=103  Identities=17%  Similarity=0.433  Sum_probs=90.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccCC
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQ  105 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~~  105 (308)
                      ++.||+|||++|..+|..|+..   +|..||..|||||..||++||.+.++            |..              
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~------------p~i--------------   51 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNYIN------------PAL--------------   51 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHHSS------------SCC--------------
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHHHc------------ccc--------------
Confidence            3679999999999999999964   49999999999999999999998764            211              


Q ss_pred             CCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021756          106 GYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       106 ~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~  185 (308)
                                                 +.++||+|||.+|+.++.+||. +|..|| .+|++||+.||++||..+.++..
T Consensus        52 ---------------------------~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~  102 (107)
T 2k9n_A           52 ---------------------------RTDPWSPEEDMLLDQKYAEYGP-KWNKIS-KFLKNRSDNNIRNRWMMIARHRA  102 (107)
T ss_dssp             ---------------------------TTCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------cccccCHHHHHHHHHHHHHhCc-CHHHHH-HHCCCCCHHHHHHHHHHHHhhHH
Confidence                                       1248999999999999999999 999999 49999999999999998887765


Q ss_pred             c
Q 021756          186 T  186 (308)
Q Consensus       186 s  186 (308)
                      .
T Consensus       103 ~  103 (107)
T 2k9n_A          103 K  103 (107)
T ss_dssp             S
T ss_pred             H
Confidence            4

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.92  E-value=2.9e-25  Score=178.85  Aligned_cols=101  Identities=24%  Similarity=0.493  Sum_probs=88.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccC
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSN  104 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~  104 (308)
                      ..+.||+|||++|..+|..|+..   +|..||+.|||||..||++||..+++            |..             
T Consensus         3 ~k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~-------------   54 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------PEV-------------   54 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTC------------CCC-------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhccC------------Ccc-------------
Confidence            56889999999999999999974   49999999999999999999998753            211             


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756          105 QGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR  183 (308)
Q Consensus       105 ~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r  183 (308)
                                                  +.++||+|||.+|+.++.+||. +|..|| .+|||||+.||++||..++++
T Consensus        55 ----------------------------~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           55 ----------------------------KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             ----------------------------CCCCCCHHHHHHHHHHHHHHSS-CHHHHH-TTCTTCCHHHHHHHHHHHTC-
T ss_pred             ----------------------------cccCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHHHHHhc
Confidence                                        1248999999999999999998 999999 599999999999999876543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.92  E-value=1.6e-24  Score=180.67  Aligned_cols=104  Identities=24%  Similarity=0.491  Sum_probs=91.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCcccccccc
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDS  103 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~  103 (308)
                      ...+.||+|||++|..+|+.|+.    +|..||..|||||..||++||.+.++            |..            
T Consensus         9 ~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~~------------   60 (126)
T 3osg_A            9 AKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLA------------PSI------------   60 (126)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTS------------TTS------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhcc------------ccc------------
Confidence            46789999999999999999986    39999999999999999999998764            211            


Q ss_pred             CCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756          104 NQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR  183 (308)
Q Consensus       104 ~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r  183 (308)
                                                   +.++||+|||++|+.++++||. +|..|| .+|++||+.||++||..+.++
T Consensus        61 -----------------------------~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           61 -----------------------------SHTPWTAEEDALLVQKIQEYGR-QWAIIA-KFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             -----------------------------CCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHHHHHH
T ss_pred             -----------------------------ccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHh
Confidence                                         1248999999999999999998 999999 599999999999999888777


Q ss_pred             Hhc
Q 021756          184 QLT  186 (308)
Q Consensus       184 ~~s  186 (308)
                      +..
T Consensus       110 ~~~  112 (126)
T 3osg_A          110 LGI  112 (126)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.91  E-value=1.1e-24  Score=181.52  Aligned_cols=106  Identities=25%  Similarity=0.472  Sum_probs=90.9

Q ss_pred             ceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccc
Q 021756           19 WLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTL   98 (308)
Q Consensus        19 ~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l   98 (308)
                      .|.+....+.||+|||++|..+|..|+..   +|..||..|||||..||++||..+++            |..       
T Consensus        20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~-------   77 (128)
T 1h8a_C           20 VLNPELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHLN------------PEV-------   77 (128)
T ss_dssp             --CTTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTTC------------SSS-------
T ss_pred             hhCCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhcc------------ccc-------
Confidence            34566788999999999999999999964   49999999999999999999998753            210       


Q ss_pred             cccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHH
Q 021756           99 EWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQ  178 (308)
Q Consensus        99 ~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaq  178 (308)
                                                        +.++||+|||++|+.++++||. +|..|| .+|+|||+.||++||.
T Consensus        78 ----------------------------------~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~r~~  121 (128)
T 1h8a_C           78 ----------------------------------KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAVKNHWN  121 (128)
T ss_dssp             ----------------------------------CCSCCCHHHHHHHHHHHHHHCS-CHHHHG-GGSTTCCHHHHHHHHH
T ss_pred             ----------------------------------ccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHCCCCCHHHHHHHHH
Confidence                                              1248999999999999999998 999999 5999999999999997


Q ss_pred             HHHH
Q 021756          179 KYFN  182 (308)
Q Consensus       179 ky~~  182 (308)
                      .+++
T Consensus       122 ~~~~  125 (128)
T 1h8a_C          122 STMR  125 (128)
T ss_dssp             TTTT
T ss_pred             HHHh
Confidence            6543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.91  E-value=2.1e-24  Score=180.88  Aligned_cols=103  Identities=15%  Similarity=0.380  Sum_probs=90.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccCC
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQ  105 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~~  105 (308)
                      ++.||+|||++|..+|..|+..   +|..||..|||||..||++||.+.++            |..              
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~~--------------   52 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFLPNRSPKQCRERWFNHLD------------PAV--------------   52 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSCTTSCHHHHHHHHHHHTS------------TTC--------------
T ss_pred             CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHCCCCHHHHHHHHhhccC------------ccc--------------
Confidence            4789999999999999999865   39999999999999999999998764            211              


Q ss_pred             CCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021756          106 GYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       106 ~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~  185 (308)
                                                 +.++||+|||.+|+.++.+||. +|..|| .+|+|||+.||++||+.++.+..
T Consensus        53 ---------------------------~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~l~~~~  103 (131)
T 3zqc_A           53 ---------------------------VKHAWTPEEDETIFRNYLKLGS-KWSVIA-KLIPGRTDNAIKNRWNSSISKRI  103 (131)
T ss_dssp             ---------------------------CCSCCCHHHHHHHHHHHHHSCS-CHHHHT-TTSTTCCHHHHHHHHHHTTGGGC
T ss_pred             ---------------------------cCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHh
Confidence                                       1248999999999999999998 999999 59999999999999998876654


Q ss_pred             c
Q 021756          186 T  186 (308)
Q Consensus       186 s  186 (308)
                      +
T Consensus       104 ~  104 (131)
T 3zqc_A          104 S  104 (131)
T ss_dssp             C
T ss_pred             h
Confidence            3

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.88  E-value=9.1e-23  Score=175.62  Aligned_cols=104  Identities=24%  Similarity=0.468  Sum_probs=90.2

Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCcccc
Q 021756           20 LFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLE   99 (308)
Q Consensus        20 ~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~   99 (308)
                      |.+....+.||.|||++|..++..|+..   +|..||..|||||..||++||..++.            |.         
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~---------  107 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------PE---------  107 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTTC------------TT---------
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHhC------------cc---------
Confidence            4455678999999999999999999864   49999999999999999999988653            21         


Q ss_pred             ccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHH
Q 021756          100 WVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQK  179 (308)
Q Consensus       100 ~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqk  179 (308)
                                                      .+..+||+|||.+|+.++++||. +|..|| .+|||||+.||++||+.
T Consensus       108 --------------------------------~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~gRt~~~~knr~~~  153 (159)
T 1h89_C          108 --------------------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNS  153 (159)
T ss_dssp             --------------------------------SCCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHT
T ss_pred             --------------------------------ccccCCChHHHHHHHHHHHHHCC-CHHHHH-HHCCCCCHHHHHHHHHH
Confidence                                            01248999999999999999998 999999 59999999999999975


Q ss_pred             HH
Q 021756          180 YF  181 (308)
Q Consensus       180 y~  181 (308)
                      ++
T Consensus       154 ~~  155 (159)
T 1h89_C          154 TM  155 (159)
T ss_dssp             TT
T ss_pred             HH
Confidence            53

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.87  E-value=7.3e-23  Score=176.22  Aligned_cols=100  Identities=21%  Similarity=0.468  Sum_probs=53.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccC
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSN  104 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~  104 (308)
                      ..+.||+|||++|.++|..|+.+   +|..||+.|||||..||++||..++.            |..             
T Consensus         5 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~-------------   56 (159)
T 1h89_C            5 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN------------PEL-------------   56 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTC------------TTC-------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHccC------------CCc-------------
Confidence            56789999999999999999864   49999999999999999999987653            210             


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          105 QGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       105 ~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                                                  +.++||+|||.+|+.++++||.++|..|| .++++||+.||++||.+|+
T Consensus        57 ----------------------------~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l  104 (159)
T 1h89_C           57 ----------------------------IKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL  104 (159)
T ss_dssp             ----------------------------CCSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTT
T ss_pred             ----------------------------CCCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHh
Confidence                                        12489999999999999999987899999 5999999999999998774

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.79  E-value=2.2e-19  Score=137.00  Aligned_cols=66  Identities=29%  Similarity=0.591  Sum_probs=62.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCC
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGY   91 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y   91 (308)
                      +....||.|||++|++||++|+.++++||++||++| |||+.||++||+.|++|+ .||+|.||+|.|
T Consensus         6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~   71 (72)
T 2cqq_A            6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSS   71 (72)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCC
Confidence            456789999999999999999999999999999998 999999999999999996 689999999987

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.78  E-value=2.3e-19  Score=143.24  Aligned_cols=68  Identities=53%  Similarity=0.943  Sum_probs=61.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCC
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYG   92 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~   92 (308)
                      ....||+|||++|++||+.|+.++++||.+||++|||||..||++||..|++||..||+|.+|+|.|.
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~   74 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYR   74 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999884

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.72  E-value=9.4e-18  Score=127.19  Aligned_cols=64  Identities=39%  Similarity=0.670  Sum_probs=59.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRRSSIHD  198 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~s~~k~krr~Sihd  198 (308)
                      +.++||+|||++|+++|++||. +|..||+ +|++||+.||++||++|+++....+.+++++|||+
T Consensus         8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s   71 (72)
T 2cu7_A            8 YSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT   71 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence            3469999999999999999999 9999995 99999999999999999999987778889999987

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.63  E-value=1.8e-16  Score=131.81  Aligned_cols=73  Identities=21%  Similarity=0.447  Sum_probs=44.2

Q ss_pred             HHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCC
Q 021756           55 VAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKG  134 (308)
Q Consensus        55 IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg  134 (308)
                      ||+.|||||..||++||...+.            |..                                         +.
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~------------p~~-----------------------------------------~k   27 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLN------------PEL-----------------------------------------NK   27 (128)
T ss_dssp             ---------------------C------------TTC-----------------------------------------CC
T ss_pred             CccccCCCCHHHHHHHHHHhhC------------CCC-----------------------------------------CC
Confidence            7999999999999999987653            211                                         12


Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      ++||+|||++|+.++++||.++|..|| .+|++||+.||+.||.+|+
T Consensus        28 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           28 GPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHL   73 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHTCSCCHHHHH-HHSSSCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHH-HHhcCCcHHHHHHHHHHhc
Confidence            489999999999999999987899999 5999999999999998764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.63  E-value=3.8e-16  Score=119.41  Aligned_cols=57  Identities=35%  Similarity=0.557  Sum_probs=53.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhh
Q 021756           23 ESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVS   79 (308)
Q Consensus        23 ~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~   79 (308)
                      ++....||+|||++|+.||+.|+.++++||.+||++|||||..||++||..|++|+.
T Consensus        15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~   71 (73)
T 2cqr_A           15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS   71 (73)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence            356678999999999999999999999999999999999999999999999998864

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.61  E-value=8.1e-16  Score=117.53  Aligned_cols=52  Identities=23%  Similarity=0.450  Sum_probs=49.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ....||+||+++|++||+.|+.++|+||++||++|||||+.||++||.+|+.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            3467999999999999999999999999999999999999999999999865

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.53  E-value=1e-15  Score=116.63  Aligned_cols=48  Identities=48%  Similarity=0.796  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYK   72 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~   72 (308)
                      .+..||.||+++||+||++|++++|+||++||+.|||||+.||+++|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            456899999999999999999999999999999999999999999985

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.53  E-value=6.3e-15  Score=107.91  Aligned_cols=49  Identities=29%  Similarity=0.611  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR  183 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r  183 (308)
                      ..+||+|||++|+++|++||.++|..|| .+|++||+.||+.||++|+..
T Consensus         8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            8 DPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHccC
Confidence            3589999999999999999977999999 599999999999999998753

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.53  E-value=1.4e-14  Score=102.78  Aligned_cols=48  Identities=31%  Similarity=0.550  Sum_probs=44.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~  182 (308)
                      .++||+|||++|+.++++||.++|..|| .+|++||+.||+.||++|+.
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHH-HTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHHcC
Confidence            3589999999999999999999999999 59999999999999998863

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.52  E-value=8.4e-15  Score=106.72  Aligned_cols=47  Identities=23%  Similarity=0.537  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVT-TRTPTQVASHAQKYFN  182 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~-tRT~~Q~~shaqky~~  182 (308)
                      .+||+|||++|+++|++||.++|..|| .+|+ +||+.||+.||++||.
T Consensus        10 ~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A           10 ENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHcc
Confidence            489999999999999999977999999 5999 9999999999999874

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1e-14  Score=110.93  Aligned_cols=51  Identities=35%  Similarity=0.543  Sum_probs=46.7

Q ss_pred             CCCCCHHHHHHHHHHHhhhCC-----CChhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021756          134 GVPWTEEEHRQFLMGLKKFGK-----GDWRNISRNFVTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~-----G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~  185 (308)
                      ..+||+|||++|+++|++||.     ++|..|| .+|++||+.||++||++|+.++.
T Consensus         8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA-~~~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHH-HHHSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHH-HHhCCCCHHHHHHHHHHHHHHHH
Confidence            358999999999999999995     5999999 59999999999999999998764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.49  E-value=2.5e-14  Score=101.53  Aligned_cols=47  Identities=23%  Similarity=0.490  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      .++||+|||++|+.++.+||.++|..|| .+|++||+.||+.||++|+
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence            3589999999999999999987899999 5999999999999998875

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=99.48  E-value=1.2e-14  Score=144.70  Aligned_cols=50  Identities=26%  Similarity=0.491  Sum_probs=46.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                      ...+||+||+.+|++||.+||+ +|..|| .+|+|||..||++||++|.+|+
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA-~~VgTKT~~Qvk~fy~~~kkr~  428 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRRF  428 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTT-CHHHHH-HHHSSCCHHHHHHHHHHTTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHhCCCCHHHHHHHHHHHHHHh
Confidence            3579999999999999999999 999999 4899999999999999887665

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.47  E-value=6.1e-14  Score=100.04  Aligned_cols=48  Identities=23%  Similarity=0.482  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcC--CCCHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVT--TRTPTQVASHAQKYFN  182 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~--tRT~~Q~~shaqky~~  182 (308)
                      .++||+|||++|+.+|.+||.++|..|| .+++  +||+.||+.+|.+|.+
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCCCHHHHHHHHHHHHc
Confidence            3589999999999999999988999999 5899  9999999999988754

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.46  E-value=5.2e-14  Score=108.91  Aligned_cols=47  Identities=30%  Similarity=0.555  Sum_probs=42.8

Q ss_pred             cCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756          132 KKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY  180 (308)
Q Consensus       132 kKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky  180 (308)
                      ....+||+|||++||+||++|| ++|..|| .+|++||+.||+.||++|
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTS
T ss_pred             ccCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHh
Confidence            3456999999999999999999 5999999 599999999999999766

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=99.46  E-value=4.1e-14  Score=133.96  Aligned_cols=131  Identities=25%  Similarity=0.349  Sum_probs=95.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhh----------hhhccCCcCCCCCCC---
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDV----------SDIEAGLIPIPGYGN---   93 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv----------~~IEag~v~lP~y~~---   93 (308)
                      +.||+.|...|++|+++||.+.   |..||+.|+|||..||+..+.-+.+..          ..||.|...+..+..   
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~---~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~  187 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDD---IDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK  187 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHH---HHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999864   999999999999999977666555443          567777655432110   


Q ss_pred             ------CCccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCC---CChhhhh---
Q 021756           94 ------DSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGK---GDWRNIS---  161 (308)
Q Consensus        94 ------~~f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~---G~W~~Ia---  161 (308)
                            ..+..+|....-.+.                      ..++..||+|||+.||.+|.+||.   |.|..|.   
T Consensus       188 ~l~~Ki~~~~~P~~~L~i~y~----------------------~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I  245 (304)
T 1ofc_X          188 ALDQKMSRYRAPFHQLRLQYG----------------------NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI  245 (304)
T ss_dssp             HHHHHHHTCSSHHHHCCCCCT----------------------TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHhccccC----------------------CCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence                  111112222110010                      013458999999999999999999   9999996   


Q ss_pred             h--------hhcCCCCHHHHHHHHHHHHH
Q 021756          162 R--------NFVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       162 r--------~~V~tRT~~Q~~shaqky~~  182 (308)
                      |        -||.+||+.+|..|++-++.
T Consensus       246 r~~p~FrFDwf~kSRTp~el~rRc~tLi~  274 (304)
T 1ofc_X          246 RASPQFRFDWFIKSRTALELQRRCNTLIT  274 (304)
T ss_dssp             HHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred             HhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence            2        37999999999999975543

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.46  E-value=3e-14  Score=103.95  Aligned_cols=48  Identities=27%  Similarity=0.523  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~  182 (308)
                      ..+||+|||++|+.++.+||.++|..|| .+|++||+.||++||++|+.
T Consensus         8 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            8 KVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CSCCCHHHHHHHHHHHHHTCTTCHHHHH-HHCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHccCCCHHHHHHHHHHHcC
Confidence            4699999999999999999976999999 59999999999999988754

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.46  E-value=1.1e-13  Score=103.79  Aligned_cols=53  Identities=23%  Similarity=0.466  Sum_probs=47.8

Q ss_pred             ccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcC--CCCHHHHHHHHHHHHHHH
Q 021756          131 RKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVT--TRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       131 rkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~--tRT~~Q~~shaqky~~r~  184 (308)
                      +++..+||+|||.+|+.+|++||.++|..|| .+++  +||+.||+.||.+|+...
T Consensus         7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~l~p~   61 (69)
T 1ity_A            7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKKLK   61 (69)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHH-HHSCCSSCCHHHHHHHHHHHHHTS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHH-HHcCcCCCCHHHHHHHHHHHcCCC
Confidence            4556799999999999999999988999999 5899  999999999999887654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=6.4e-14  Score=105.27  Aligned_cols=50  Identities=22%  Similarity=0.526  Sum_probs=45.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ...+.||+|||++|..+|..|+..   +|..||..|||||..||++||..++.
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWLD   56 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence            466899999999999999999954   49999999999999999999998764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.43  E-value=2.1e-13  Score=101.44  Aligned_cols=49  Identities=29%  Similarity=0.513  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcC--CCCHHHHHHHHHHHHH
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVT--TRTPTQVASHAQKYFN  182 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~--tRT~~Q~~shaqky~~  182 (308)
                      +..+||+|||++|+++|++||.++|..||+ +++  +||+.||+.+|.++.+
T Consensus        10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHhc
Confidence            345899999999999999999989999995 655  9999999999988754

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=8.5e-13  Score=100.27  Aligned_cols=55  Identities=27%  Similarity=0.438  Sum_probs=48.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCC--ChhHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 021756           23 ESKGTKWTPQENKQFENALAVYDKDT--PDRWIKVAAMIPGKTVGDVIKQYKELEED   77 (308)
Q Consensus        23 ~~~~~~WT~EEdk~Le~Ala~y~~~t--~dRW~~IAa~vPGRT~~qc~~rY~~L~~D   77 (308)
                      ....+.||+|||++|+++|+.|+.++  +++|..||++|||||..||++||..++..
T Consensus         5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            34668899999999999999999765  37899999999999999999999777653

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.4e-13  Score=101.29  Aligned_cols=49  Identities=20%  Similarity=0.531  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~  182 (308)
                      +.++||+|||++|+.+|++||.++|..|| .+|++||+.||+.||.+|+.
T Consensus         8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            8 KGGVWRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWLD   56 (70)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTCSSCHHHHH-HHSTTCCHHHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHhcCCCHHHHHHHHHHHcC
Confidence            34699999999999999999977999999 59999999999999988754

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=7.2e-13  Score=97.44  Aligned_cols=49  Identities=16%  Similarity=0.256  Sum_probs=44.7

Q ss_pred             CcccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756          127 SDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA  177 (308)
Q Consensus       127 ~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha  177 (308)
                      .+.+|+...+||+||+++|+++|.+||+ +|..|| .+|++||..||..||
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v~~Y   53 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCVLYY   53 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence            3456777789999999999999999998 999999 699999999999986

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.37  E-value=5.7e-13  Score=101.73  Aligned_cols=50  Identities=16%  Similarity=0.500  Sum_probs=43.8

Q ss_pred             cCCCCCCHHHHHHHHHHHhhhCCC---ChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 021756          132 KKGVPWTEEEHRQFLMGLKKFGKG---DWRNISRNFVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       132 kKg~pWTeEE~~llL~gl~kyG~G---~W~~Iar~~V~tRT~~Q~~shaqky~~  182 (308)
                      ....+||.|||++|+.+|.+||.+   +|.+|| .+|||||+.||++||+.+..
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHHHS
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHH
Confidence            345689999999999999999942   899999 59999999999999987643

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.36  E-value=5.5e-13  Score=103.15  Aligned_cols=58  Identities=31%  Similarity=0.469  Sum_probs=50.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh-hhhhhhhccCC
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL-EEDVSDIEAGL   85 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L-~~Dv~~IEag~   85 (308)
                      .....||+|||++|++||++|+ +   +|.+||.+|+|||..||+.||.++ ++|+..+|++-
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G-~---~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~   74 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYK-D---DWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDS   74 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSS-S---CHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCC
T ss_pred             ccCCCcCHHHHHHHHHHHHHhC-C---CHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCC
Confidence            4567899999999999999999 2   599999999999999999999998 77776666543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=9.8e-13  Score=97.67  Aligned_cols=50  Identities=24%  Similarity=0.452  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~s  186 (308)
                      ..+||+|||++|+.+++.||. +|..||.  +++||+.||++||+.|+.....
T Consensus         9 k~~WT~eED~~L~~~~~~~g~-~W~~Ia~--~~gRt~~qcr~Rw~~~l~~~~~   58 (66)
T 2din_A            9 KTEWSREEEEKLLHLAKLMPT-QWRTIAP--IIGRTAAQCLEHYEFLLDKAAQ   58 (66)
T ss_dssp             CCCCCHHHHHHHHHHHHHCTT-CHHHHHH--HHSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHhc--ccCcCHHHHHHHHHHHhChHhc
Confidence            458999999999999999999 9999994  6789999999999999888754

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.32  E-value=1.3e-11  Score=112.95  Aligned_cols=136  Identities=13%  Similarity=0.183  Sum_probs=89.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCC--CChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCcccccc
Q 021756           24 SKGTKWTPQENKQFENALAVYDKD--TPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFTLEWV  101 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~--t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~l~~~  101 (308)
                      .....||+|||++|..++.+||..  +...|..||.+|||||..+|++||..++..-  ++-      .|..+.......
T Consensus         6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~--ln~------vy~~ded~~Li~   77 (246)
T 1ign_A            6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR--LEY------VYEVDKFGKLVR   77 (246)
T ss_dssp             --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG--CCC------EECBCTTSCBCB
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh--ccc------ccccCcchhhhh
Confidence            456799999999999999999863  2334999999999999999999999876531  110      011110000000


Q ss_pred             ccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhh-h----------------------------
Q 021756          102 DSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKK-F----------------------------  152 (308)
Q Consensus       102 ~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~k-y----------------------------  152 (308)
                      .             ..|. +.......+ .. ...||.|||-.|...+++ |                            
T Consensus        78 d-------------~~Gn-~ikis~lp~-si-K~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~  141 (246)
T 1ign_A           78 D-------------DDGN-LIKTKVLPP-SI-KRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARR  141 (246)
T ss_dssp             C-------------TTSC-BCEESSCCC-CS-CCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC------------
T ss_pred             c-------------cCCC-ceeeeccCc-cc-cCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhh
Confidence            0             0000 100000111 11 237999999999999987 2                            


Q ss_pred             ----C------------------------CCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          153 ----G------------------------KGDWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       153 ----G------------------------~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                          |                        .+.|+.|| .++|+||...+++||.|+.+..
T Consensus       142 ~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia-~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          142 NMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFA-EEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             -------------------CCCCCCCCCCTTHHHHHH-HHTTTSCHHHHHHHHHHTHHHH
T ss_pred             hcccCccccccCCcchhhhccccccCcchHHHHHHHH-HHCCCCChhhHHHHHHHHHhhc
Confidence                1                        13799999 5999999999999999887665

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.7e-12  Score=95.25  Aligned_cols=60  Identities=20%  Similarity=0.447  Sum_probs=53.0

Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccC
Q 021756           20 LFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAG   84 (308)
Q Consensus        20 ~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag   84 (308)
                      |.+....+.||.|||++|..++..|+.    +|..||. +||||..||++||..++.+...+|+|
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            445667889999999999999999986    4999999 88999999999999999887776665

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.31  E-value=3.1e-12  Score=93.54  Aligned_cols=50  Identities=26%  Similarity=0.325  Sum_probs=45.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      .....||+|||++|.++|+.|+.+   +|..||++|||||..||++||..++.
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            466889999999999999999964   49999999999999999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.99  E-value=1.7e-13  Score=108.08  Aligned_cols=49  Identities=33%  Similarity=0.500  Sum_probs=45.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                      .++||+|||.+|+.++.+||. +|..|| .+|+|||+.||++||+.|+++.
T Consensus        16 ~~~WT~eEd~~l~~~~~~~G~-~W~~IA-~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           16 FQGWTEEEMGTAKKGLLEHGR-NWSAIA-RMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            469999999999999999999 999999 5999999999999999998776

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.31  E-value=3.8e-12  Score=90.09  Aligned_cols=49  Identities=18%  Similarity=0.466  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ..+.||.|||++|..+|..|+.+   +|..||..|||||..||++||..+++
T Consensus         2 ~~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            2 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46789999999999999999974   49999999999999999999998874

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.29  E-value=4.5e-12  Score=98.97  Aligned_cols=50  Identities=16%  Similarity=0.384  Sum_probs=45.5

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhh---hcCCCCHHHHHHHHHHHHHHHh
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRN---FVTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~---~V~tRT~~Q~~shaqky~~r~~  185 (308)
                      |||+|||+.|+.||++||.|+|+.|++.   ++++||+.||+++|.+++++..
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            7999999999999999999999999964   3899999999999999877553

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.29  E-value=5.7e-12  Score=102.49  Aligned_cols=55  Identities=18%  Similarity=0.397  Sum_probs=47.9

Q ss_pred             cccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhh---cCCCCHHHHHHHHHHHHHHH
Q 021756          130 ERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNF---VTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       130 erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~---V~tRT~~Q~~shaqky~~r~  184 (308)
                      .+++..+||+|||++|+.||++||.|+|+.|++.+   +++||+.+|+.+|.+++++-
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            45566799999999999999999999999999643   38999999999999876643

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.28  E-value=5.4e-12  Score=89.38  Aligned_cols=49  Identities=16%  Similarity=0.389  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ..+.||+|||++|..+|..|+..   +|..||..|||||..||++||..++.
T Consensus         2 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            2 IKGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46789999999999999999964   49999999999999999999998764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.28  E-value=7.1e-12  Score=91.24  Aligned_cols=51  Identities=20%  Similarity=0.403  Sum_probs=46.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           23 ESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        23 ~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ....+.||+|||++|..+|..|+..   +|..||.+|||||..||++||..++.
T Consensus         5 ~~~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            5 SSGKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHcC
Confidence            3467899999999999999999953   49999999999999999999998875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.25  E-value=8.4e-12  Score=90.76  Aligned_cols=48  Identities=15%  Similarity=0.293  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC-CCCHHHHHHHHHHhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP-GKTVGDVIKQYKELE   75 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP-GRT~~qc~~rY~~L~   75 (308)
                      ..+.||+|||++|..+|++|+.+   +|..||.+|| |||..||++||.++.
T Consensus         8 ~~~~WT~eED~~L~~~v~~~G~~---~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            8 FDENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTTTT---CHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            35679999999999999999965   4999999999 999999999998763

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.24  E-value=1.4e-11  Score=102.52  Aligned_cols=56  Identities=16%  Similarity=0.385  Sum_probs=49.2

Q ss_pred             ccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhh---cCCCCHHHHHHHHHHHHHHH
Q 021756          129 QERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNF---VTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       129 ~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~---V~tRT~~Q~~shaqky~~r~  184 (308)
                      ..+++..+||+||+++|+.||++||.|+|..|++.+   +++||+.||+++|.++++..
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            345666799999999999999999999999999754   59999999999999987754

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.23  E-value=8.2e-12  Score=95.32  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=39.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHH
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQ  178 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaq  178 (308)
                      +.++||+|||++|++++++||. +|..||+ ++ +||+.||++||.
T Consensus        22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~   64 (73)
T 2llk_A           22 HVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR   64 (73)
T ss_dssp             CCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence            3469999999999999999999 7999995 78 999999999996

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.23  E-value=3e-11  Score=100.60  Aligned_cols=57  Identities=19%  Similarity=0.366  Sum_probs=49.4

Q ss_pred             ccccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhh---cCCCCHHHHHHHHHHHHHHHh
Q 021756          129 QERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNF---VTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       129 ~erkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~---V~tRT~~Q~~shaqky~~r~~  185 (308)
                      ..+++..+||+|||+.|++||++||.|+|..|++.+   +++||..||+.+|.++++.-.
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            345566799999999999999999999999999743   489999999999999876553

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.22  E-value=1.9e-11  Score=90.84  Aligned_cols=50  Identities=18%  Similarity=0.484  Sum_probs=44.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC--CCCHHHHHHHHHHhhh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP--GKTVGDVIKQYKELEE   76 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP--GRT~~qc~~rY~~L~~   76 (308)
                      ...+.||+|||++|..+|+.|+.+.   |..||+.+|  |||..||++||..++.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGN---WAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCc---hHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            4678899999999999999999753   999999977  9999999999999875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.22  E-value=2.4e-11  Score=86.50  Aligned_cols=47  Identities=15%  Similarity=0.392  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC--CCCHHHHHHHHHHhh
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP--GKTVGDVIKQYKELE   75 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP--GRT~~qc~~rY~~L~   75 (308)
                      .+.||+|||++|..+|+.||.+   +|..||..||  |||..||++||..++
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~   50 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMK   50 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999964   4999999999  999999999999876

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.19  E-value=1.5e-11  Score=98.56  Aligned_cols=47  Identities=23%  Similarity=0.477  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      .++||+|||++|+.+|++||.++|..|| .+|++||+.||+.||.+|+
T Consensus         4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL   50 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhcc
Confidence            3589999999999999999988999999 5999999999999998764

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.17  E-value=3.2e-11  Score=96.02  Aligned_cols=49  Identities=29%  Similarity=0.588  Sum_probs=44.2

Q ss_pred             CCCCHHHHHHHHHHHhhhCC---CChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGK---GDWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~---G~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                      .+||.|||++|+.+|.+||.   .+|.+|| .+|||||+.||++||+.++...
T Consensus         9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA-~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            9 RPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHHHH
Confidence            48999999999999999984   3799999 5999999999999999887665

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.17  E-value=4.3e-11  Score=90.35  Aligned_cols=52  Identities=29%  Similarity=0.539  Sum_probs=46.8

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 021756           22 QESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEED   77 (308)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~D   77 (308)
                      +....+.||.|||++|..+++.||.    +|..||.+|||||..||+.||..++..
T Consensus         5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3457789999999999999999997    499999999999999999999988653

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=99.16  E-value=1.7e-11  Score=111.31  Aligned_cols=50  Identities=26%  Similarity=0.474  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                      ...+||+||+++|++||.+||+ +|..||+ +|+|||..||++||.+|.+|+
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRl  181 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRF  181 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHh
Confidence            3468999999999999999999 9999995 999999999999999887664

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.13  E-value=4.8e-11  Score=96.27  Aligned_cols=46  Identities=33%  Similarity=0.574  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      ++||+|||.+|+.+|.+||.++|..|| .+|++||+.||+.||.+|+
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L   47 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYI   47 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSSCHHHHH-HHTTTSCHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHh-hhcCCCCHHHHHHHHHHHH
Confidence            479999999999999999988999999 5999999999999998774

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.12  E-value=1.1e-10  Score=87.30  Aligned_cols=50  Identities=16%  Similarity=0.397  Sum_probs=45.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC--CCCHHHHHHHHHHhhh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP--GKTVGDVIKQYKELEE   76 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP--GRT~~qc~~rY~~L~~   76 (308)
                      ...+.||+|||++|..+|+.||.+   +|..||..||  |||..||++||..++.
T Consensus         8 ~~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            8 RKRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence            456889999999999999999964   3999999999  9999999999999876

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.11  E-value=7.1e-11  Score=98.22  Aligned_cols=87  Identities=17%  Similarity=0.286  Sum_probs=69.6

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhC----CCCCHHHHHHHHHHhhhhhhhhccCCcCCCCCCCCCcc
Q 021756           22 QESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMI----PGKTVGDVIKQYKELEEDVSDIEAGLIPIPGYGNDSFT   97 (308)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~v----PGRT~~qc~~rY~~L~~Dv~~IEag~v~lP~y~~~~f~   97 (308)
                      .....+.||.|||+.|..+|++||.+   +|..||..+    +|||..||++||..++.-. .|+      |        
T Consensus        13 ~rr~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~-~~~------p--------   74 (121)
T 2juh_A           13 QRRIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA-SIA------P--------   74 (121)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH-HTC------S--------
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHhhh-ccC------C--------
Confidence            34567899999999999999999975   499999984    8999999999999987510 000      0        


Q ss_pred             ccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCCCChhh
Q 021756           98 LEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRN  159 (308)
Q Consensus        98 l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~G~W~~  159 (308)
                                                      ..+++.+|++||+.+++.+...||. +|.+
T Consensus        75 --------------------------------~~krg~~~p~e~~~rv~~~h~~~gn-~~~~  103 (121)
T 2juh_A           75 --------------------------------QQRRGEPVPQDLLDRVLAAHAYWSQ-QQGK  103 (121)
T ss_dssp             --------------------------------TTCCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred             --------------------------------cccCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence                                            0112448999999999999999998 7766

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.11  E-value=7.8e-11  Score=97.69  Aligned_cols=47  Identities=23%  Similarity=0.430  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      +.++||+|||++|+.++.+||. +|..|| .+|++||+.||+.||.+|+
T Consensus        10 kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A           10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYL   56 (126)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhc
Confidence            4468999999999999999999 999999 5999999999999998875

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.10  E-value=7.1e-11  Score=98.49  Aligned_cols=46  Identities=26%  Similarity=0.434  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      ++||+|||++|+.+|.+||.++|..|| .+|++||+.||+.||.+|+
T Consensus         3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l   48 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHL   48 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhcc
Confidence            489999999999999999988999999 5999999999999998875

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.07  E-value=1.3e-10  Score=88.59  Aligned_cols=54  Identities=17%  Similarity=0.377  Sum_probs=46.6

Q ss_pred             CceecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           18 NWLFQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        18 ~~~~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      |.|.+....+.||+|||++|.++++.||..    |..||..| |||..||++||..|..
T Consensus        15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           15 YFQGDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ----CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             eecCCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            456678889999999999999999999964    99999999 9999999999998764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=2.2e-10  Score=84.79  Aligned_cols=44  Identities=23%  Similarity=0.579  Sum_probs=40.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA  177 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha  177 (308)
                      +..+||+||+++|++||.+||+ +|..|++++|++||..||..+|
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY   51 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFY   51 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHH
Confidence            3468999999999999999999 9999996579999999999886

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.05  E-value=1.7e-10  Score=85.36  Aligned_cols=48  Identities=23%  Similarity=0.450  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhh--hhcCCCCHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISR--NFVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar--~~V~tRT~~Q~~shaqky~~  182 (308)
                      +.+||+||++.|++||++||+ +|..|+.  .|+++||...++++|....+
T Consensus         8 r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            8 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            358999999999999999999 9999994  27899999999999976543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.04  E-value=1.2e-10  Score=88.85  Aligned_cols=45  Identities=20%  Similarity=0.457  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHhhhCC---CChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGK---GDWRNISRNFVTTRTPTQVASHAQKY  180 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~---G~W~~Iar~~V~tRT~~Q~~shaqky  180 (308)
                      .+||+||+++|+.||..|++   ++|.+|| .+|+|||..+|+.||+.+
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA-~~V~gKT~eE~~~hY~~l   56 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence            37999999999999999987   4899999 599999999999998654

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.03  E-value=5.9e-10  Score=92.81  Aligned_cols=50  Identities=20%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhC----CCCCHHHHHHHHHHhhh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMI----PGKTVGDVIKQYKELEE   76 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~v----PGRT~~qc~~rY~~L~~   76 (308)
                      ...+.||.|||+.|..+|++||.+   +|..|+..+    +|||..||++||.+++.
T Consensus        29 r~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk   82 (122)
T 2roh_A           29 RIRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVH   82 (122)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            456889999999999999999986   499999974    89999999999999874

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=4.7e-10  Score=82.28  Aligned_cols=46  Identities=22%  Similarity=0.305  Sum_probs=41.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      ....||+||+++|+.+++.||.+    |..||++|||||+.||+++|..-
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTC----HHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHHHh
Confidence            45789999999999999999864    99999999999999999999754

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.98  E-value=9.9e-10  Score=82.94  Aligned_cols=43  Identities=26%  Similarity=0.477  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA  177 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha  177 (308)
                      ..+||+||+++|++||.+||+ +|..|++++|++||..||..+|
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY   50 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY   50 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHH
Confidence            358999999999999999999 9999996579999999999987

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.95  E-value=7.5e-10  Score=84.19  Aligned_cols=44  Identities=32%  Similarity=0.579  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHhhhCCC---ChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKG---DWRNISRNFVTTRTPTQVASHAQKY  180 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G---~W~~Iar~~V~tRT~~Q~~shaqky  180 (308)
                      .+||.||+++|+.+|.+|+.|   +|.+||. ++ +||..||++||+++
T Consensus         9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L   55 (72)
T 2cqq_A            9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL   55 (72)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHH
Confidence            489999999999999999854   7999995 77 89999999999876

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.83  E-value=7.4e-10  Score=84.37  Aligned_cols=44  Identities=32%  Similarity=0.677  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCC---ChhhhhhhhcCCCCHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKG---DWRNISRNFVTTRTPTQVASHAQ  178 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G---~W~~Iar~~V~tRT~~Q~~shaq  178 (308)
                      +.+||.||+++|+.||.+|+++   +|.+|| ..|||||..+|+.||+
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA-~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVA-QYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTG-GGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHcCCCCHHHHHHHHH
Confidence            3589999999999999999986   899999 5999999999999986

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.33  E-value=3.9e-10  Score=88.69  Aligned_cols=52  Identities=21%  Similarity=0.300  Sum_probs=46.3

Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           21 FQESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        21 ~~~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ......+.||.|||.+|..++..||.    +|..||.+|||||..||+.||..++.
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~gRt~~q~k~r~~~~lr   62 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGSKTVSQCKNFYFNYKK   62 (89)
Confidence            34557789999999999999999986    39999999999999999999987764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.76  E-value=1.3e-08  Score=79.42  Aligned_cols=47  Identities=17%  Similarity=0.249  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhh----CCCCCHHHHHHHHHHhhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAM----IPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~----vPGRT~~qc~~rY~~L~~   76 (308)
                      +.||.|||+.|..+|++||.+.   |..|+..    |+|||..||++||.+++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~---W~~I~~~~~~~~~~RT~~~lKdrWrnllk   51 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGR---WRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSC---HHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCC---cHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence            4699999999999999999864   9999996    899999999999999874

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.76  E-value=3.9e-09  Score=96.66  Aligned_cols=50  Identities=22%  Similarity=0.387  Sum_probs=45.1

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCC-----hhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGD-----WRNISRNFVTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~-----W~~Iar~~V~tRT~~Q~~shaqky~~r~~  185 (308)
                      .+||+|||++||+++++||..+     |..|| .+++|||+.||++||..|+++..
T Consensus         9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~~~l   63 (246)
T 1ign_A            9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSKRL   63 (246)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGGGC
T ss_pred             CCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHhhhc
Confidence            5899999999999999999843     99999 59999999999999999877653

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=98.69  E-value=2.4e-08  Score=96.76  Aligned_cols=135  Identities=21%  Similarity=0.307  Sum_probs=89.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC-CCCHHHHHHHHHHhh------hh----hhhhccCCcCCCCCC---
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP-GKTVGDVIKQYKELE------ED----VSDIEAGLIPIPGYG---   92 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP-GRT~~qc~~rY~~L~------~D----v~~IEag~v~lP~y~---   92 (308)
                      +.||+.|-..|.+|+++||.+.   ...||+.|. |||..||...++-+.      .|    +..||.|...+-...   
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d---~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~  200 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNS---IQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ  200 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTC---HHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhH---HHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999864   899999998 999999974332221      11    234554422110000   


Q ss_pred             ------CCCccccccccCCCCCCCccccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHhhhCC---CChhhhhhh
Q 021756           93 ------NDSFTLEWVDSNQGYDGLKNFYGPGGKRGSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGK---GDWRNISRN  163 (308)
Q Consensus        93 ------~~~f~l~~~~~~~~~dg~~~~~~~ggkR~~~~~~~~~erkKg~pWTeEE~~llL~gl~kyG~---G~W~~Iar~  163 (308)
                            ...+..+|....-.|.+       .             ..++..||+|||+.||.+|.+||-   |.|..|-..
T Consensus       201 ~~L~~Ki~~y~~P~~~L~i~y~~-------~-------------~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~  260 (374)
T 2y9y_A          201 EALRRKLSEYKNPFFDLKLKHPP-------S-------------SNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDE  260 (374)
T ss_dssp             HHHHHHHTTCSSHHHHCCCSSCC-------C-------------CSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCCHHHceeccCC-------C-------------CCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence                  01122233321111110       0             012347999999999999999998   899999532


Q ss_pred             -----------hcCCCCHHHHHHHHHHHHHHH
Q 021756          164 -----------FVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       164 -----------~V~tRT~~Q~~shaqky~~r~  184 (308)
                                 |+.+||+.++..|+.-++.-.
T Consensus       261 Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I  292 (374)
T 2y9y_A          261 IRDCPLFELDFYFRSRTPVELARRGNTLLQCL  292 (374)
T ss_dssp             HHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence                       389999999999997554433

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=3.8e-08  Score=72.63  Aligned_cols=47  Identities=28%  Similarity=0.572  Sum_probs=42.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHh-hCCCCCHHHHHHHHHHh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAA-MIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa-~vPGRT~~qc~~rY~~L   74 (308)
                      .....||+||.++|+.+|++|+.+    |..||. +||+||+.||++.|-.-
T Consensus         7 ~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            7 GIEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHhcc
Confidence            345689999999999999999996    999998 69999999999998643

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=98.65  E-value=6e-08  Score=72.18  Aligned_cols=55  Identities=33%  Similarity=0.412  Sum_probs=46.0

Q ss_pred             ccCCCCCCHHHHHHHHHHHhhhCCC--Chhhhhhhh--cCCCCHHHHHHHHHHHHHHHhc
Q 021756          131 RKKGVPWTEEEHRQFLMGLKKFGKG--DWRNISRNF--VTTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       131 rkKg~pWTeEE~~llL~gl~kyG~G--~W~~Iar~~--V~tRT~~Q~~shaqky~~r~~s  186 (308)
                      ++.+..||+|.|+.|++||..+|..  .++.|-+ +  |++.|..+|+||.|||+..+..
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            3456789999999999999999942  2788974 5  6789999999999999988753

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=98.61  E-value=2.6e-07  Score=81.92  Aligned_cols=50  Identities=12%  Similarity=0.127  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhh--CCCCCHHHHHHHHHHhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAM--IPGKTVGDVIKQYKELE   75 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~--vPGRT~~qc~~rY~~L~   75 (308)
                      .-..||+.|...|.+|+.+||.. .+||+.|++.  |.+||..+|.+.+..+.
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~   57 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVH   57 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            34679999999999999999942 3679999965  77999999987665543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.59  E-value=7.2e-08  Score=78.27  Aligned_cols=51  Identities=18%  Similarity=0.245  Sum_probs=45.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhC----CCCCHHHHHHHHHHhhh
Q 021756           23 ESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMI----PGKTVGDVIKQYKELEE   76 (308)
Q Consensus        23 ~~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~v----PGRT~~qc~~rY~~L~~   76 (308)
                      ....+.||.|||+.|..+|.+||.+   +|..|+..+    +|||..||++||..++.
T Consensus        10 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk   64 (105)
T 2aje_A           10 RRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH   64 (105)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999986   499999976    89999999999999875

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.55  E-value=1.1e-07  Score=71.66  Aligned_cols=45  Identities=29%  Similarity=0.533  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHh-hCCCCCHHHHHHHHHHh
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAA-MIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa-~vPGRT~~qc~~rY~~L   74 (308)
                      ...||+||.++|+.+|+.||.+    |..||. +||+||+.||++.|-.-
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w   53 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMW   53 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHHhh
Confidence            4579999999999999999996    999999 69999999999998743

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.52  E-value=9.1e-08  Score=76.06  Aligned_cols=42  Identities=19%  Similarity=0.306  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA  177 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha  177 (308)
                      ...||+||+++|++++..||+ +|..|+ .++++||..||..+|
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV~~Y   84 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLYY   84 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence            458999999999999999999 999999 699999999999986

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.48  E-value=2.5e-07  Score=68.35  Aligned_cols=48  Identities=15%  Similarity=0.316  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHH---hhCCCCCHHHHHHHHHHhhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVA---AMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IA---a~vPGRT~~qc~~rY~~L~~   76 (308)
                      ....||+||++.|.+.|.+||..    |..|+   .++++||..++.++|..|..
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            56789999999999999999973    99999   46789999999999999864

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.41  E-value=2.4e-07  Score=84.25  Aligned_cols=48  Identities=21%  Similarity=0.380  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ....||.||+++|+.||+.|+.+    |..||..|+|||+.||+.+|.....
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            45689999999999999999976    9999999999999999999986543

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.33  E-value=7.3e-07  Score=70.82  Aligned_cols=45  Identities=22%  Similarity=0.364  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      ...||+||.++|+.++..||++    |.+||++||+||+.||++.|-.-
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhcc
Confidence            4679999999999999999986    99999999999999999998654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=97.86  E-value=1e-05  Score=59.03  Aligned_cols=47  Identities=15%  Similarity=0.313  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHHHHhhh--------CCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKF--------GKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~ky--------G~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      .++|+|||++|+.-|.+|        |+.-|+.|++..++.+|-.+++.||.|++
T Consensus         3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            589999999999999999        55579999964799999999999988764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.80  E-value=3.9e-05  Score=60.91  Aligned_cols=50  Identities=12%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhc-----CCCCHHHHHHHHHHHHHHHhc
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFV-----TTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V-----~tRT~~Q~~shaqky~~r~~s  186 (308)
                      .+||.||...|++.+++||. +|..|+ ..+     ++||..++++||-...+++..
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~-DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~   85 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIH-DRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHH-HHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC-Ceeeeh-hhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999 999999 466     689999999999887777754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.70  E-value=3.3e-05  Score=77.09  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELE   75 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~   75 (308)
                      ....||.||..+|+.+|.+||.+    |..||..|++||+.||+.+|....
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45789999999999999999986    999999999999999999997643

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.64  E-value=9.7e-05  Score=58.62  Aligned_cols=48  Identities=17%  Similarity=0.370  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhC-----CCCCHHHHHHHHHHhhhhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMI-----PGKTVGDVIKQYKELEEDV   78 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~v-----PGRT~~qc~~rY~~L~~Dv   78 (308)
                      ..||+||+..|..++..|+.    ||..|+..+     ++||+.++++||..+...+
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l   83 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL   83 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence            78999999999999999997    499999999     5899999999998876543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.56  E-value=0.00011  Score=57.91  Aligned_cols=49  Identities=16%  Similarity=0.313  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      -.||+|||+.+..+...-+. +++.|..||..|.+|+..||.+||++|..
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            46999999999999888765 35679999999999999999999999864

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=97.50  E-value=0.00022  Score=51.82  Aligned_cols=50  Identities=6%  Similarity=0.106  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCC-----CChhHHHHHh-hCCCCCHHHHHHHHHHhh
Q 021756           26 GTKWTPQENKQFENALAVYDKD-----TPDRWIKVAA-MIPGKTVGDVIKQYKELE   75 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~-----t~dRW~~IAa-~vPGRT~~qc~~rY~~L~   75 (308)
                      ...+|.|||+.|.+.|+.|...     ...-|..+|+ .+|++|-..|++||.+-+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            4679999999999999998432     3456999999 899999999999998754

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=97.47  E-value=0.00064  Score=63.31  Aligned_cols=50  Identities=14%  Similarity=0.108  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhh--CCCCCHHHHHHHHHHhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAM--IPGKTVGDVIKQYKELE   75 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~--vPGRT~~qc~~rY~~L~   75 (308)
                      +.+.||..|...|.+++-+||.- .+||+.|++.  |+.|+..++.+-|.+|.
T Consensus         2 p~~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~~~~~li   53 (270)
T 2xb0_X            2 PLGSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGETYDEMM   53 (270)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence            45789999999999999999964 3589999754  56899999888877664

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.42  E-value=0.00033  Score=55.33  Aligned_cols=52  Identities=25%  Similarity=0.333  Sum_probs=45.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCC--CChhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021756          133 KGVPWTEEEHRQFLMGLKKFGK--GDWRNISRNFVTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       133 Kg~pWTeEE~~llL~gl~kyG~--G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~  185 (308)
                      +.+-||.|||+.+|...++-|.  ..|..|| ..+.+||+.||++|+|.+++-..
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA-~~L~Nks~nqV~~RFq~Lm~Lf~   85 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGAQPHTFSVIS-QQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH-HHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCCChhHHHHHH-HHHccCCHHHHHHHHHHHHHHHH
Confidence            4578999999999999999985  3799999 58899999999999998766654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.38  E-value=3.9e-05  Score=57.55  Aligned_cols=48  Identities=15%  Similarity=0.268  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      -.||+|||+.+..++..-|.. ++.|..||..| +||+.||.+||.+|+.
T Consensus        15 vlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            469999999998888776652 46799999999 8999999999999864

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.21  E-value=6.8e-05  Score=56.21  Aligned_cols=49  Identities=20%  Similarity=0.373  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhCC--CChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGK--GDWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~--G~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                      .+-||.|||+.+|...++-|.  ..|..||. -+ +||+.||.+|++.++.-.
T Consensus        14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~Lm~Lf   64 (70)
T 2lr8_A           14 IILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQLMKLF   64 (70)
Confidence            357999999999999999886  37999995 55 999999999998876554

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.67  E-value=0.0039  Score=49.37  Aligned_cols=48  Identities=17%  Similarity=0.369  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC-----CCCHHHHHHHHHHhhhhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP-----GKTVGDVIKQYKELEEDV   78 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP-----GRT~~qc~~rY~~L~~Dv   78 (308)
                      ..||.||...|-.++..|+.    ||..|+....     .||++|+++||-.+...+
T Consensus        31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l   83 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL   83 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            57999999999999999997    4999999985     699999999998876544

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=96.63  E-value=0.0027  Score=60.09  Aligned_cols=48  Identities=29%  Similarity=0.582  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~  184 (308)
                      .||..+-..|+.|+.+||+.+|..|| ..|+++|+.+|+.+++-++.|.
T Consensus       112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA-~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          112 AWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHT-TSSTTCCHHHHHHHHHHHHHHG
T ss_pred             ccCHHHHHHHHHHHHHhCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhH
Confidence            59999999999999999999999999 5899999999999877665554

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.32  E-value=0.0058  Score=46.80  Aligned_cols=54  Identities=11%  Similarity=0.326  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcC------CCCChhHHHHHhhCC----CCCHHHHHHHHHHhhhhh
Q 021756           25 KGTKWTPQENKQFENALAVYD------KDTPDRWIKVAAMIP----GKTVGDVIKQYKELEEDV   78 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~------~~t~dRW~~IAa~vP----GRT~~qc~~rY~~L~~Dv   78 (308)
                      +...||.+|..+|..+.....      ......|+.||+.|-    .||+.||..+|..|...-
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            457899999999999886422      123457999999975    599999999999998653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.16  E-value=0.0059  Score=46.75  Aligned_cols=53  Identities=17%  Similarity=0.359  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHhhh----CC-----CChhhhhhhhc---CCCCHHHHHHHHHHHHHHHhc
Q 021756          134 GVPWTEEEHRQFLMGLKKF----GK-----GDWRNISRNFV---TTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~ky----G~-----G~W~~Iar~~V---~tRT~~Q~~shaqky~~r~~s  186 (308)
                      +..||.+|-.+||.+...+    ..     ..|..||..+-   -.||+.||+..|.....+...
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~   68 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK   68 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3579999999999998753    11     16999995321   279999999999887666543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.84  E-value=0.019  Score=45.39  Aligned_cols=51  Identities=12%  Similarity=0.214  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhc----CCCCHHHHHHHHHHHHHHHhc
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFV----TTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V----~tRT~~Q~~shaqky~~r~~s  186 (308)
                      ..||.||-..|+..+++|+- +|--|+--+-    +.||..+++.||-...+++..
T Consensus        31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~   85 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            36999999999999999998 9999994332    479999999999888888764

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=95.81  E-value=0.012  Score=51.66  Aligned_cols=50  Identities=22%  Similarity=0.347  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHhhhC--CCChhhhhhh-hcCCCCHHHHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFG--KGDWRNISRN-FVTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG--~G~W~~Iar~-~V~tRT~~Q~~shaqky~~r~  184 (308)
                      ..||+.|-+.|+.++.+||  .++|..|+++ -+.+||...|+..+..+..+.
T Consensus         8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            4799999999999999999  6799999853 277999999998877665543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.63  E-value=0.18  Score=37.14  Aligned_cols=49  Identities=14%  Similarity=0.194  Sum_probs=38.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhC--CCCCHHHHHHHHHHh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMI--PGKTVGDVIKQYKEL   74 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~v--PGRT~~qc~~rY~~L   74 (308)
                      ..-.||.|.-+.|..||..+|.+. --+..|.+.|  +|.|..+|..|.++.
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~-AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVER-AVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTT-CCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCC-CCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            446799999999999999998442 2377887775  589999998876654

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=90.16  E-value=0.4  Score=46.42  Aligned_cols=48  Identities=23%  Similarity=0.469  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVT-TRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~-tRT~~Q~~shaqky~~r~  184 (308)
                      .||.-+=..|+.|+.+||+.+-..||. .|. ++|+.+|+.+++-++.|.
T Consensus       125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~Ry  173 (374)
T 2y9y_A          125 NWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSNI  173 (374)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHhh
Confidence            599999999999999999999999994 777 999999998876665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	1e-21
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	4e-05
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	4e-18
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-16
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-07
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	4e-14
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	1e-05
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	5e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	8e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	7e-06
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-09
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	9e-05
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	8e-06
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-08
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	3e-06
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-05
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-05
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-04

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (208), Expect = 1e-21
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLI 86
           +WT ++  Q   ++  +   TP RW K+A  + G++V DV  + K+L++ V+    G++
Sbjct: 2  PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT-CSPGMV 59

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (89), Expect = 4e-05
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 137 WTEEEHRQFLMGLKKFGKGD---WRNISRNFVTTRTPTQVASHAQKYFN 182
           WTEE+  Q    + KF  G    W  I+      R+ T V + A++  +
Sbjct: 4   WTEEDLSQLTRSMVKFPGGTPGRWEKIAH--ELGRSVTDVTTKAKQLKD 50

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 74.6 bits (183), Expect = 4e-18
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 130 ERKKGVPWTEEEHRQFLMGLKKFGKGDWR--NISRN-FVTTRTPTQVASHAQKYFNRQ 184
           ++K  V WT E H +FL  +   G        I     V   T   VASH QK+    
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 69.2 bits (169), Expect = 4e-16
 Identities = 34/62 (54%), Positives = 43/62 (69%)

Query: 26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGL 85
          G  W+ +ENK FE ALAVYDKDTPDRW  VA  + G+T  +V K Y+ L ED+  IE+G 
Sbjct: 1  GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGK 60

Query: 86 IP 87
          +P
Sbjct: 61 VP 62

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 134 GVPWTEEEHRQFLMGLKKFGKGDWRNISR--NFVTTRTPTQVASH 176
           G PW+ +E++ F   L  + K      +     V  RTP +V  H
Sbjct: 1   GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKH 45

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (155), Expect = 4e-14
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRR 193
           W+  E   F   L+K+GK D+ +I ++F+  ++ T +  +   Y  +       ++R
Sbjct: 4   WSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY--YMWKTTDRYVQQKR 57

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 28 KWTPQENKQFENALAVYDKDTPDRWIKVAA-MIPGKTVGDVIKQY 71
          +W+  E   FE AL  Y KD    +  +    +P K++  +I+ Y
Sbjct: 3  EWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYY 43

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 5e-10
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRRS 194
           V WT EE   F  GL KFG+  W  IS+  + +RT  QV S+A++YF  ++  G DK   
Sbjct: 3   VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 195 S 195
           +
Sbjct: 61  N 61

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 8e-10
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 129 QERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQ 184
           ++R+    W+E+E   F     +  K ++  I+  F+  +T  +   +   Y+  +
Sbjct: 12  KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLY---YYLTK 62

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 7e-06
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 22 QESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQY 71
                 W+ QE + F      + K+    +  +A+ +  KTV + +  Y
Sbjct: 13 DRQVMNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYY 58

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 5e-09
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 131 RKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNR 183
           +K    WT EE    +  ++K+G+ D++ IS   +  ++  QV +    Y  R
Sbjct: 2   QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 9e-05
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 23 ESKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYK 72
          +    +WT +E      A+  Y +D    +  ++ +I  K+V  V   + 
Sbjct: 2  QKCNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFV 47

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 5e-09
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL 74
          S    WT  + K  E AL  Y + + D W K+A  +P K+  D I +YK L
Sbjct: 10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 8e-06
 Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 121 GSSTRPSDQERKKGVPWTEEEHRQFLMGLKKFGKGDWRNISR--NFVTTRTPTQVASH 176
           GS  +  ++ R    PWT+ + +   + L+++ +G      +    V +++     + 
Sbjct: 1   GSLRK--ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIAR 56

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 3e-08
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 137 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF 181
           WT +E    L  +   G G+W++++   + T+T  +   H  KYF
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYF 47

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 132 KKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFV-TTRTPTQV 173
           K+   W  EE +    G++K+G+G+W  I  ++    RT   +
Sbjct: 1   KRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML 42

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 2e-05
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 132 KKGVPWTEEEHRQFLMGLKKFGKGDWRNISRN-FVTTRTPTQV 173
           KK   WT EE      G++K+G+G+W  IS+N     RT   +
Sbjct: 1   KKQ-KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN 182
            WT EE  +    +++ G  DW+ I+  ++  RT  Q     QK  N
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLN 48

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 132 KKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN 182
            KG PWT+EE ++ +  ++K+G   W  I++  +  R   Q       + N
Sbjct: 2   IKG-PWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHLN 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.77
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.6
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.59
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.52
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.52
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.5
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.49
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.47
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.42
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.41
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.4
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.36
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.33
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.32
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.31
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.29
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.29
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.27
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.25
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.21
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	99.19
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.16
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.14
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.14
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.09
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.06
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.05
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.0
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.92
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.9
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.66
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.56
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.56
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	98.16
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	97.32
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	97.09
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.68
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.4
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	96.17
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	95.05
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.14
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	93.87
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	90.54
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	83.9

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.77  E-value=2.7e-19  Score=131.00  Aligned_cols=63  Identities=54%  Similarity=0.939  Sum_probs=60.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhhhhhccCCcCC
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDVSDIEAGLIPI   88 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv~~IEag~v~l   88 (308)
                      +..||+|||++|++||+.|+.+.+++|.+||.+|||||..||++||..|++||+.||+|.||+
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~iesg~vpf   63 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF   63 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccccCCCCC
Confidence            467999999999999999999999999999999999999999999999999999999999874

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.8e-16  Score=108.01  Aligned_cols=45  Identities=31%  Similarity=0.679  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      .||+|||.+||++|++||.++|..|| ++|++||+.||++||++||
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia-~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHH-HHcCCCCHHHHHHHHHHhC
Confidence            49999999999999999998999999 6999999999999999997

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.3e-16  Score=111.23  Aligned_cols=51  Identities=31%  Similarity=0.663  Sum_probs=48.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhhhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEEDV   78 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~Dv   78 (308)
                      .+||.||+++|++||++||.++++||++||++| |||+.||+.||+.|.+++
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~~   52 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   52 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999 999999999999998754

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.5e-15  Score=105.92  Aligned_cols=51  Identities=37%  Similarity=0.628  Sum_probs=47.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      .....||.|||++|+.||+.|+.+++++|.+||++|||||..||+.||+.|
T Consensus        10 ~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            456789999999999999999999999999999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=106.13  Aligned_cols=51  Identities=43%  Similarity=0.757  Sum_probs=46.8

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTG  187 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~s~  187 (308)
                      +.||+|||++|+++|.+||+ +|..|| .+|++||+.||++||++|+++....
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~-~W~~Ia-~~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGR-RWTKIS-KLIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCHHHHHHHHHHHHHhcc-hHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            36999999999999999997 999999 5999999999999999999887543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=7.6e-15  Score=103.37  Aligned_cols=47  Identities=23%  Similarity=0.490  Sum_probs=43.7

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      ++|||+|||++|++++++||.++|..|| .++++||+.||++||++|+
T Consensus         3 rg~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHH-HHHCCCCHHHHHHHHHhhC
Confidence            3599999999999999999988999999 5999999999999998874

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.8e-14  Score=100.44  Aligned_cols=46  Identities=30%  Similarity=0.554  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      .+||+|||.+|+.+|.+||.++|..|| .+|++||+.||+.||++|+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHH-HTSTTCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHH-HHHCCCCHHHHHHHHHhhC
Confidence            479999999999999999988999999 5999999999999999885

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.7e-14  Score=99.62  Aligned_cols=45  Identities=29%  Similarity=0.602  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~  181 (308)
                      .|||+|||++|+.++++||. +|..|| .+||+||+.||++||..++
T Consensus         2 ~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS-CHHHHH-TTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhh-HHHHHH-hHcCCCCHHHHHHHHHHHc
Confidence            48999999999999999999 999999 5999999999999998764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.9e-14  Score=97.74  Aligned_cols=47  Identities=23%  Similarity=0.572  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhh-cCCCCHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNF-VTTRTPTQVASHAQKY  180 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~-V~tRT~~Q~~shaqky  180 (308)
                      ..|||+|||.+|+.+|++||.|+|..|++.+ +.+||+.||+.+|.++
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl   49 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            3599999999999999999999999999633 4699999999999875

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.7e-13  Score=97.22  Aligned_cols=49  Identities=29%  Similarity=0.580  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCChhhhhhhh-cCCCCHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGDWRNISRNF-VTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~W~~Iar~~-V~tRT~~Q~~shaqky~~  182 (308)
                      ..+||+|||++|+++|++||.|+|..|++.+ +++||+.||+.+|+++..
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            3589999999999999999998999999633 579999999999987644

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.40  E-value=2.2e-13  Score=99.07  Aligned_cols=48  Identities=31%  Similarity=0.661  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCC---ChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKG---DWRNISRNFVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G---~W~~Iar~~V~tRT~~Q~~shaqky~~  182 (308)
                      |.+||.|||++|+.+|++||.|   +|..|| .+|+|||+.||+.||+++..
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia-~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHHCCCCchHHHHHH-HHcCCCCHHHHHHHHHHHHH
Confidence            3589999999999999999987   499999 69999999999999965543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.6e-13  Score=95.51  Aligned_cols=47  Identities=17%  Similarity=0.524  Sum_probs=42.2

Q ss_pred             cCCCCCCHHHHHHHHHHHhhhCCC---ChhhhhhhhcCCCCHHHHHHHHHH
Q 021756          132 KKGVPWTEEEHRQFLMGLKKFGKG---DWRNISRNFVTTRTPTQVASHAQK  179 (308)
Q Consensus       132 kKg~pWTeEE~~llL~gl~kyG~G---~W~~Iar~~V~tRT~~Q~~shaqk  179 (308)
                      ....+||+|||.+|+.+|.+||.|   +|..|| .+||+||+.||+.||+.
T Consensus        10 ~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA-~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHcCCccchHHHHHH-HHcCCCCHHHHHHHHHH
Confidence            344689999999999999999987   499999 59999999999999963

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.1e-12  Score=91.13  Aligned_cols=48  Identities=19%  Similarity=0.485  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ++.||.|||++|..+|..|+.+.   |..||..|||||..||++||.+.++
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDD---WKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSC---HHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            35799999999999999999764   9999999999999999999998764

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.3e-12  Score=91.74  Aligned_cols=49  Identities=14%  Similarity=0.356  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      .++.||+|||++|..+|+.|+.+.   |..||..|||||..||++||...++
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g~~~---W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYGPKR---WSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTTC---HHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            467899999999999999998653   9999999999999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=8.7e-14  Score=107.50  Aligned_cols=51  Identities=10%  Similarity=0.202  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCC--CChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           26 GTKWTPQENKQFENALAVYDKD--TPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~--t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ++.||.|||++|.++|..||..  ....|..||..|||||..||++||...+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~   53 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLS   53 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTG
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            3679999999999999999852  34569999999999999999999998765

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.29  E-value=2.4e-12  Score=94.19  Aligned_cols=56  Identities=32%  Similarity=0.408  Sum_probs=46.5

Q ss_pred             ccCCCCCCHHHHHHHHHHHhhhCCCCh--hhhhhhh-cCCCCHHHHHHHHHHHHHHHhc
Q 021756          131 RKKGVPWTEEEHRQFLMGLKKFGKGDW--RNISRNF-VTTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       131 rkKg~pWTeEE~~llL~gl~kyG~G~W--~~Iar~~-V~tRT~~Q~~shaqky~~r~~s  186 (308)
                      +|.+..||+|||+.|+.||..||.++|  +.|...+ |+++|..||+||+|||+.++..
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            445678999999999999999998444  5676422 8999999999999999998753

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2e-12  Score=88.90  Aligned_cols=45  Identities=27%  Similarity=0.381  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      ..||.|||.+|..||..||.+.   |..||++|||||..||+.||.+.
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~~n---W~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGFGN---WQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCTTC---HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCcc---HHHHHHHcCCCCHHHHHHHHHHh
Confidence            4599999999999999999764   99999999999999999999864

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-12  Score=95.26  Aligned_cols=46  Identities=26%  Similarity=0.535  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFN  182 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~  182 (308)
                      .+||+||+.+|+.+|.+||+ +|..|| .+|+|||+.||+++|.++.+
T Consensus         6 ~~WT~eE~~~f~~~~~~~G~-~w~~Ia-~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           6 ARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             SSCCHHHHHHHHHHHHHHSS-CHHHHH-HHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHhCc-hHHHHH-HHcCCCCHHHHHHHHHHHHh
Confidence            47999999999999999998 999999 59999999999999877643

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.8e-12  Score=95.30  Aligned_cols=46  Identities=20%  Similarity=0.300  Sum_probs=41.9

Q ss_pred             ccCCCCCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHH
Q 021756          131 RKKGVPWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQ  178 (308)
Q Consensus       131 rkKg~pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaq  178 (308)
                      ++...+||+||+++|+.+|.+||+ +|..|| .+|++||..||++||.
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia-~~~~~rt~~q~~~~yy   59 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLYYY   59 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTTS-CSSSHH-HHTTTSCHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHCC-cHHHHH-HHcCCCCHHHHHHHHH
Confidence            445568999999999999999998 999999 5999999999999974

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.1e-11  Score=85.27  Aligned_cols=46  Identities=24%  Similarity=0.547  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhh
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELE   75 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~   75 (308)
                      +..||+|||++|..++..||.    +|..||.+|||||..||+.||..++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS----CHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhh----HHHHHHhHcCCCCHHHHHHHHHHHc
Confidence            367999999999999999996    3999999999999999999998764

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.5e-11  Score=87.82  Aligned_cols=41  Identities=27%  Similarity=0.544  Sum_probs=39.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHA  177 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~sha  177 (308)
                      .||+||+++|++||.+||+ +|..|++.+||+||..||.++|
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~Ks~~~~v~fY   43 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY   43 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCCCCHHHHHHHH
Confidence            6999999999999999999 9999996679999999999997

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.16  E-value=2.5e-11  Score=92.64  Aligned_cols=49  Identities=16%  Similarity=0.411  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhh---cCCCCHHHHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNF---VTTRTPTQVASHAQKYFNRQ  184 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~---V~tRT~~Q~~shaqky~~r~  184 (308)
                      |||.|||.+|+.||++||.|+|..|++.+   +++||+.||+.+|.+|....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~   53 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhh
Confidence            89999999999999999999999999643   68999999999999887543

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.1e-11  Score=87.52  Aligned_cols=46  Identities=30%  Similarity=0.563  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ..||+|||++|..+|..||.+    |..||.+|||||..||+.||..++.
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~~~Rt~~q~k~ry~~~~~   48 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQVKSYARQYFK   48 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSC----HHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcch----HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            579999999999999999964    9999999999999999999988765

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=1.3e-11  Score=95.10  Aligned_cols=50  Identities=22%  Similarity=0.387  Sum_probs=45.1

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCC-----hhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021756          135 VPWTEEEHRQFLMGLKKFGKGD-----WRNISRNFVTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~G~-----W~~Iar~~V~tRT~~Q~~shaqky~~r~~  185 (308)
                      .+||+|||.+|+.++.+||..+     |..|| .+|++||+.||+.||++|+....
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA-~~lpgRt~~qcr~Rw~~~L~p~l   56 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSKRL   56 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGGGC
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHH-HHcCCCCHHHHHHHHHHHcCccc
Confidence            4799999999999999999743     99999 59999999999999999877654

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-10  Score=81.68  Aligned_cols=47  Identities=15%  Similarity=0.393  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC--CCCHHHHHHHHHHhh
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP--GKTVGDVIKQYKELE   75 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP--GRT~~qc~~rY~~L~   75 (308)
                      .+.||.|||++|..+|..||.+.   |..||..+|  |||..||++||.+|.
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~~---W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEGN---WSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC---HHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999764   999999866  899999999999875

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.06  E-value=7.9e-11  Score=89.74  Aligned_cols=47  Identities=17%  Similarity=0.249  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhh----CCCCCHHHHHHHHHHhhh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAM----IPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~----vPGRT~~qc~~rY~~L~~   76 (308)
                      +.||.|||.+|..+|.+||.+.   |..||..    +++||..||++||.+++.
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~---W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGR---WRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSC---HHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCccc---HHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            4799999999999999999764   9999975    689999999999999874

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.7e-10  Score=81.44  Aligned_cols=48  Identities=15%  Similarity=0.419  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhh--CCCCCHHHHHHHHHHhhh
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAM--IPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~--vPGRT~~qc~~rY~~L~~   76 (308)
                      ...||.|||++|..+|+.||.+.   |..||..  +++||..||++||.+++.
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~~---W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEGN---WAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCh---HHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            46899999999999999998653   9999998  459999999999999875

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.4e-10  Score=82.90  Aligned_cols=47  Identities=21%  Similarity=0.408  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           26 GTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ...||+||+.+|..+|..||.+    |..||++|||||..||+.+|..+..
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCch----HHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            4679999999999999999965    9999999999999999999987653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=7e-10  Score=86.50  Aligned_cols=51  Identities=25%  Similarity=0.350  Sum_probs=45.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCC---hhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021756          134 GVPWTEEEHRQFLMGLKKFGKGD---WRNISRNFVTTRTPTQVASHAQKYFNRQLT  186 (308)
Q Consensus       134 g~pWTeEE~~llL~gl~kyG~G~---W~~Iar~~V~tRT~~Q~~shaqky~~r~~s  186 (308)
                      .+.||.|||+.||+.++++|. +   |..|| .++++||+.||++||+.+++.+..
T Consensus        33 ~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia-~~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_          33 VVLWTREADRVILTMCQEQGA-QPHTFSVIS-QQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTS-CTTTHHHHH-HHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHcCC-cHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHH
Confidence            468999999999999999996 5   99999 599999999999999987777653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.1e-10  Score=82.40  Aligned_cols=47  Identities=21%  Similarity=0.345  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELE   75 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~   75 (308)
                      ....||.||+++|..+|..||.+    |..||.+|||||..||+.+|....
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSC----SSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCc----HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            44679999999999999999965    999999999999999999997654

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.1e-08  Score=73.22  Aligned_cols=43  Identities=33%  Similarity=0.611  Sum_probs=38.8

Q ss_pred             CCCHHHHHHHHHHHhhhCCC---ChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKG---DWRNISRNFVTTRTPTQVASHAQKY  180 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G---~W~~Iar~~V~tRT~~Q~~shaqky  180 (308)
                      .||.||+++|..||.+|+.|   +|.+|| ++| +||..||..+++.+
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA-~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIA-HEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHH-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHH-HHH-CCCHHHHHHHHHHH
Confidence            69999999999999999866   799999 588 89999999998643

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=6.2e-08  Score=75.30  Aligned_cols=51  Identities=18%  Similarity=0.300  Sum_probs=44.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHhhh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKELEE   76 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L~~   76 (308)
                      ....||+|||+.+...+.+++. .+.-|..||+.|+|||..||++||+.|+.
T Consensus        32 ~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~   82 (95)
T d1ug2a_          32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999984 23449999999999999999999998864

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=4.5e-08  Score=69.26  Aligned_cols=44  Identities=30%  Similarity=0.581  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCChhHHHHHh-hCCCCCHHHHHHHHHHhh
Q 021756           28 KWTPQENKQFENALAVYDKDTPDRWIKVAA-MIPGKTVGDVIKQYKELE   75 (308)
Q Consensus        28 ~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa-~vPGRT~~qc~~rY~~L~   75 (308)
                      .||.||-++|+.++..||.+    |..||+ +||+||+.||++.|-.-.
T Consensus         3 ~WT~eE~~~F~~~~~~yGKd----f~~I~~~~v~~Ks~~~~v~fYY~~K   47 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMWK   47 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccc----HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence            59999999999999999986    999997 579999999999997543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2.8e-06  Score=61.97  Aligned_cols=51  Identities=25%  Similarity=0.474  Sum_probs=47.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHHHHh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQYKEL   74 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY~~L   74 (308)
                      ....+|+.+|..+|..|++.++...+.-|..||..|+.||..+|.+.|.+-
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~   56 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhC
Confidence            345789999999999999999999999999999999999999999999764

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.32  E-value=0.00028  Score=48.63  Aligned_cols=41  Identities=32%  Similarity=0.458  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCCCCCHHHHHHHH
Q 021756           28 KWTPQENKQFENALAVYDKDTPDRWIKVAAMIPGKTVGDVIKQY   71 (308)
Q Consensus        28 ~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vPGRT~~qc~~rY   71 (308)
                      .|++.|-..|.+|+++||.+.   -+.||..|.|||..||..-+
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d---~~~Ia~e~~~Kt~eEV~~Y~   41 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDD---IDNIAKDVEGKTPEEVIEYN   41 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhh---HHHHHHHhcCCCHHHHHHHH
Confidence            499999999999999999864   89999999999999985433

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.09  E-value=0.0006  Score=46.90  Aligned_cols=49  Identities=29%  Similarity=0.561  Sum_probs=44.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQL  185 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar~~V~tRT~~Q~~shaqky~~r~~  185 (308)
                      .|+.-|=..|+.|+.+||+.+-..|| ..|.++|+.+|+.++.-+..|..
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia-~e~~~Kt~eEV~~Y~~vFw~ry~   49 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERCT   49 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHT-TSSTTCCHHHHHHHHHHHHHHGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHH-HHhcCCCHHHHHHHHHHHHHHHH
Confidence            39999999999999999999999999 58999999999999887777653

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.68  E-value=0.0022  Score=45.74  Aligned_cols=47  Identities=17%  Similarity=0.268  Sum_probs=37.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCChhH--HHHHhh--CCCCCHHHHHHHHHHh
Q 021756           25 KGTKWTPQENKQFENALAVYDKDTPDRW--IKVAAM--IPGKTVGDVIKQYKEL   74 (308)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~t~dRW--~~IAa~--vPGRT~~qc~~rY~~L   74 (308)
                      ..-.||+||-++|..||+.+|.+   +|  ..|.+.  +||+|..||..|.++.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~---~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVE---RAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTT---TCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcc---ccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            44679999999999999999865   24  466555  6899999998876654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.0038  Score=41.39  Aligned_cols=42  Identities=26%  Similarity=0.499  Sum_probs=35.5

Q ss_pred             CCCHHHHHHHHHHHhhhCCCChhhhhh--hhcCCCCHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGDWRNISR--NFVTTRTPTQVASHAQ  178 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~W~~Iar--~~V~tRT~~Q~~shaq  178 (308)
                      .||+||-..|+.|+++||. .|..|-=  -|-+||+...++-.|.
T Consensus         3 nft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~   46 (49)
T d1x58a1           3 DFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYH   46 (49)
T ss_dssp             SCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHH
Confidence            5999999999999999999 9999952  2578999988876543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.17  E-value=0.0035  Score=50.35  Aligned_cols=46  Identities=22%  Similarity=0.389  Sum_probs=39.7

Q ss_pred             CCCHHHHHHHHHHHhhhCCCC---hhhhhh-----------hhcCCCCHHHHHHHHHHHH
Q 021756          136 PWTEEEHRQFLMGLKKFGKGD---WRNISR-----------NFVTTRTPTQVASHAQKYF  181 (308)
Q Consensus       136 pWTeEE~~llL~gl~kyG~G~---W~~Iar-----------~~V~tRT~~Q~~shaqky~  181 (308)
                      .+|+|||+.||..+-+||-|+   |..|..           -|+.+||+..+..|+.-.+
T Consensus        51 ~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi  110 (128)
T d1ofcx2          51 NYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI  110 (128)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHH
Confidence            699999999999999999998   999852           2489999999999987443

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0091  Score=41.71  Aligned_cols=46  Identities=15%  Similarity=0.319  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHHHHhhhCC------C--ChhhhhhhhcCCCCHHHHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGK------G--DWRNISRNFVTTRTPTQVASHAQKY  180 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~------G--~W~~Iar~~V~tRT~~Q~~shaqky  180 (308)
                      .|+|+|||+.|+.-|.++..      |  -|+..++.-++.+|-..-++||.|.
T Consensus         3 ~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~   56 (59)
T d1fexa_           3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH   56 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            58999999999999999843      1  4999985458999999999997654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.042  Score=39.44  Aligned_cols=42  Identities=21%  Similarity=0.499  Sum_probs=36.3

Q ss_pred             CCCCHHHHHHHHHHHhhhCC---CChhhhhhhhcCCCCHHHHHHHH
Q 021756          135 VPWTEEEHRQFLMGLKKFGK---GDWRNISRNFVTTRTPTQVASHA  177 (308)
Q Consensus       135 ~pWTeEE~~llL~gl~kyG~---G~W~~Iar~~V~tRT~~Q~~sha  177 (308)
                      ..|+++|=..|-.++.-+.+   |=|..+| ..|++||..+|...|
T Consensus         9 ~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA-~~VGtRSaeECQ~ky   53 (73)
T d1wgxa_           9 KEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKY   53 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhcCCCCCccHHHHH-HHHccCCHHHHHHHH
Confidence            36999999999999888764   5699999 699999999998743

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.87  E-value=0.1  Score=34.30  Aligned_cols=44  Identities=18%  Similarity=0.411  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhCC---CCCHHHHHHHHHHh
Q 021756           27 TKWTPQENKQFENALAVYDKDTPDRWIKVAAMIP---GKTVGDVIKQYKEL   74 (308)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~vP---GRT~~qc~~rY~~L   74 (308)
                      ..||+||..-|-+.|..|+..    |..|-=.+|   ||+..+..+.|..|
T Consensus         2 knft~eEv~YL~~GVK~~G~~----WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcch----hhhhhhccCCCCCchhhHHHHHHHhh
Confidence            469999999999999999976    999987776   99999999999876

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.33  Score=33.39  Aligned_cols=50  Identities=6%  Similarity=0.106  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCC-----CChhHHHHHh-hCCCCCHHHHHHHHHHhh
Q 021756           26 GTKWTPQENKQFENALAVYDKD-----TPDRWIKVAA-MIPGKTVGDVIKQYKELE   75 (308)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~-----t~dRW~~IAa-~vPGRT~~qc~~rY~~L~   75 (308)
                      ....|.|||++|.+-|+.+...     ...-|..++. .+|..|-.--++||.+-+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L   57 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            3578999999999999987543     2455999985 689999999999997644

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.90  E-value=0.94  Score=35.62  Aligned_cols=53  Identities=21%  Similarity=0.308  Sum_probs=44.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCChhHHHHHhhC---C---------CCCHHHHHHHHHHhhh
Q 021756           24 SKGTKWTPQENKQFENALAVYDKDTPDRWIKVAAMI---P---------GKTVGDVIKQYKELEE   76 (308)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t~dRW~~IAa~v---P---------GRT~~qc~~rY~~L~~   76 (308)
                      ..+...|.|||.-|.-.+..||-+.++-|+.|-..|   |         .||+.++-+|-.-|+.
T Consensus        47 nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (128)
T d1ofcx2          47 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT  111 (128)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHH
Confidence            456679999999999999999999888899986554   3         7999999999877654