Citrus Sinensis ID: 021800
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 307 | ||||||
| 296085147 | 407 | unnamed protein product [Vitis vinifera] | 0.925 | 0.697 | 0.716 | 1e-114 | |
| 225430613 | 311 | PREDICTED: uncharacterized protein LOC10 | 0.925 | 0.913 | 0.716 | 1e-114 | |
| 449449589 | 300 | PREDICTED: uncharacterized protein LOC10 | 0.944 | 0.966 | 0.694 | 1e-108 | |
| 359807472 | 307 | uncharacterized protein LOC100797094 [Gl | 0.856 | 0.856 | 0.710 | 1e-106 | |
| 388493948 | 311 | unknown [Medicago truncatula] | 0.889 | 0.877 | 0.636 | 1e-101 | |
| 357441291 | 1109 | Ammonium transporter [Medicago truncatul | 0.882 | 0.244 | 0.637 | 1e-101 | |
| 357441293 | 824 | Ammonium transporter [Medicago truncatul | 0.882 | 0.328 | 0.637 | 1e-101 | |
| 297805270 | 307 | hypothetical protein ARALYDRAFT_493710 [ | 0.899 | 0.899 | 0.665 | 1e-101 | |
| 224145864 | 301 | predicted protein [Populus trichocarpa] | 0.833 | 0.850 | 0.735 | 1e-100 | |
| 15240205 | 309 | uncharacterized protein [Arabidopsis tha | 0.899 | 0.893 | 0.655 | 1e-94 |
| >gi|296085147|emb|CBI28642.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/300 (71%), Positives = 244/300 (81%), Gaps = 16/300 (5%)
Query: 19 STSHNTLLFHQNTHYIPPLKVSAKPFLSSS--------KPLTVLFALTESDSPKSLQPDS 70
S+S TLLF + H+IP KP S+S +P T FALT+SDSPKSL P+
Sbjct: 113 SSSSPTLLFLHSPHHIP-----LKPSHSTSITLKFLHFRPHTAPFALTDSDSPKSLSPNP 167
Query: 71 ---QTLLQELADSFDLPSDYLAQLPRDLRLDLNDAAFDLSNGPVVDECGQELGELLLNLT 127
QTLLQELADSFDLPSDY AQLPRDLRLDLNDAAFDLS+GPV+DECGQELGE LLNL+
Sbjct: 168 ETPQTLLQELADSFDLPSDYFAQLPRDLRLDLNDAAFDLSSGPVIDECGQELGETLLNLS 227
Query: 128 RAWEQADSSTSHSLVKKLPALESSLTDNAKSAFGKRLISAGRRFQAMGQYGQGELQKIAK 187
RAWEQAD+S+S +LV KLP+LE SLTDNAK+AFGKRL+SAGRRFQ+MGQYGQGELQ+IAK
Sbjct: 228 RAWEQADTSSSSTLVSKLPSLEGSLTDNAKTAFGKRLVSAGRRFQSMGQYGQGELQRIAK 287
Query: 188 AMTAAGKLLSASSISTTIDEQPKKETRLLKFGELQVEVTPEKAYIGAAIGFVFGILSWEL 247
AMT GKLL ASS+S + QPK+ETR+LKFGELQV +T +KA IGAAIGFVFGILSW+L
Sbjct: 288 AMTMTGKLLCASSVSAETNVQPKEETRMLKFGELQVALTSDKANIGAAIGFVFGILSWQL 347
Query: 248 GQGIQSTPESSLQYANDNALLLAKSLRGALLAACYSSTLLSVCTVIGLFLYGRQLASKEK 307
QG+QS PESSLQYANDNALLLAKSLRGALLA CYSST LS +GL L R+L S+EK
Sbjct: 348 SQGVQSIPESSLQYANDNALLLAKSLRGALLAICYSSTALSALATVGLILLARELKSEEK 407
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430613|ref|XP_002266617.1| PREDICTED: uncharacterized protein LOC100251819 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449449589|ref|XP_004142547.1| PREDICTED: uncharacterized protein LOC101217511 [Cucumis sativus] gi|449479709|ref|XP_004155684.1| PREDICTED: uncharacterized LOC101217511 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|359807472|ref|NP_001241140.1| uncharacterized protein LOC100797094 [Glycine max] gi|255638414|gb|ACU19517.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|388493948|gb|AFK35040.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357441291|ref|XP_003590923.1| Ammonium transporter [Medicago truncatula] gi|355479971|gb|AES61174.1| Ammonium transporter [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357441293|ref|XP_003590924.1| Ammonium transporter [Medicago truncatula] gi|355479972|gb|AES61175.1| Ammonium transporter [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297805270|ref|XP_002870519.1| hypothetical protein ARALYDRAFT_493710 [Arabidopsis lyrata subsp. lyrata] gi|297316355|gb|EFH46778.1| hypothetical protein ARALYDRAFT_493710 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|224145864|ref|XP_002325791.1| predicted protein [Populus trichocarpa] gi|222862666|gb|EEF00173.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|15240205|ref|NP_198552.1| uncharacterized protein [Arabidopsis thaliana] gi|16604482|gb|AAL24247.1| AT5g37360/MNJ8_150 [Arabidopsis thaliana] gi|21655281|gb|AAM65352.1| AT5g37360/MNJ8_150 [Arabidopsis thaliana] gi|332006789|gb|AED94172.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 307 | ||||||
| TAIR|locus:2169150 | 309 | AT5G37360 "AT5G37360" [Arabido | 0.899 | 0.893 | 0.616 | 4.4e-84 |
| TAIR|locus:2169150 AT5G37360 "AT5G37360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 172/279 (61%), Positives = 206/279 (73%)
Query: 32 HYIPPLKVSAKPFLSSSKPLTVLFALTESDSPKSLQ---PDSQTLLQELADSFDLPSDYL 88
H+ LK + + SK LT+ FALTESDS K L+ P S++LL +L+ FDLPSDY
Sbjct: 31 HFSSSLKPNKSKRHNLSKSLTLRFALTESDSTKPLEIEEPSSKSLLLQLSKCFDLPSDYF 90
Query: 89 AQLPRDLRLDLNDAAFDLSNGPVVDECGQELGELLLNLTRAWEQADSSTSHSLVKKLPAL 148
QLP DLRLDLNDAAFDLSNGPV+DECGQELGE LLNL+RAWEQAD+STS SLV+KLP L
Sbjct: 91 QQLPNDLRLDLNDAAFDLSNGPVIDECGQELGETLLNLSRAWEQADTSTSRSLVEKLPEL 150
Query: 149 ESSLTDNAKSAFGKRLISAGRRFQAMGQYGQGELQKIAKAMTAAGKLLSASSISTTIDEQ 208
E LTD A+SAFGKRLISAG+RFQ MGQY +GELQKIAKAM G +LSA + S ++ +
Sbjct: 151 EILLTDGARSAFGKRLISAGKRFQGMGQYAKGELQKIAKAMITTGGVLSAKTSSVSVSNE 210
Query: 209 PKKETRLLKFGELQVEVTPEKAYIGAAIGFVFGILSWELGQGIQSTPESSLQYANDNXXX 268
K TR+ KFGELQV VTPEKAY GAAI F++GILSW++ QGIQS PE+SLQYANDN
Sbjct: 211 SKSGTRMFKFGELQVAVTPEKAYTGAAIAFIYGILSWQISQGIQSIPENSLQYANDNALL 270
Query: 269 XXXXXXXXXXXXCYSSTLLSVCTVIGLFLYGRQLASKEK 307
Y+ST+LS T GL L +QL+S+++
Sbjct: 271 IGKSLRGSLLALFYASTVLSGFTTAGLILLAKQLSSEKE 309
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.364 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 307 268 0.00096 114 3 11 23 0.39 34
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 603 (64 KB)
Total size of DFA: 176 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.67u 0.16s 23.83t Elapsed: 00:00:01
Total cpu time: 23.67u 0.16s 23.83t Elapsed: 00:00:01
Start: Fri May 10 13:02:02 2013 End: Fri May 10 13:02:03 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 307 | |||
| PF11282 | 82 | DUF3082: Protein of unknown function (DUF3082); In | 97.94 |
| >PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function | Back alignment and domain information |
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Probab=97.94 E-value=2e-05 Score=62.52 Aligned_cols=78 Identities=27% Similarity=0.298 Sum_probs=68.4
Q ss_pred eeccccchhhHHHHHHHHHHhhhccccc-CCCcccccccchhHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 021800 225 VTPEKAYIGAAIGFVFGILSWELGQGIQ-STPESSLQYANDNALLLAKSLRGALLAACYSSTLLSVCTVIGLFLYGRQL 302 (307)
Q Consensus 225 iT~~kA~iGAai~~vFGilSWqLaqGvQ-s~PesSlqYANDNAlllakSLrgaLLal~Ysst~LSa~t~vGL~lLa~ql 302 (307)
.||-++.+||+++.++++.+|++++.|. +.....+.|-|--|..++-.+|+...-+||--|+.=++.++||++++-|+
T Consensus 2 ~~Pl~~l~Ga~~ag~la~~ly~lt~~i~~~fa~~p~~s~~~~a~~Ia~~vRTlv~Gl~~LaTfiF~~~~lGL~ll~iql 80 (82)
T PF11282_consen 2 PTPLRCLSGALIAGGLAYGLYFLTTSIAASFASKPIHSSNYIAQNIASAVRTLVVGLCYLATFIFGFVALGLFLLFIQL 80 (82)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999998763 34444455667778999999999999999999999999999999999885
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 307 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 51.8 bits (123), Expect = 2e-07
Identities = 48/305 (15%), Positives = 86/305 (28%), Gaps = 109/305 (35%)
Query: 57 LTESDSPKSLQPDSQTLLQELADSFDLPSDYLAQLP--------RDLRL----------- 97
L +SP+++ Q LL ++ ++ SD+ + + RL
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 98 ---DLNDA----AFDLSNGPVVDECGQELGELLLNLTRAWEQADS----STSH-SLVKKL 145
++ +A AF+LS C ++LL TR + D +T+H SL
Sbjct: 249 VLLNVQNAKAWNAFNLS-------C-----KILL-TTRFKQVTDFLSAATTTHISLDHHS 295
Query: 146 PALESSLTDN--AK---------------------SAFGKRLISAGRRFQAMGQYGQGEL 182
L + K S + + + +L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 183 QKIAKAMTAAGKLLSASSISTTIDEQPKKETRLLKFGELQVEVTPEKAYIGAAIGFVFGI 242
I I ++++ E R + F L V P A+I + +
Sbjct: 356 TTI---------------IESSLNVLEPAEYRKM-FDRL--SVFPPSAHIPTI---LLSL 394
Query: 243 LSWELGQGIQSTPESSLQYANDNALLLAKSLRGALLAACYSSTLLSVCTVIGLFLYGRQL 302
+ W I+S + L S L + + L
Sbjct: 395 I-W--FDVIKSDVMVVVN------KLHKYS-----LVEKQPKEST-------ISIPSIYL 433
Query: 303 ASKEK 307
K K
Sbjct: 434 ELKVK 438
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00