Citrus Sinensis ID: 021839

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASDAN
cccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccccEEEEcccccccccccccccccEEEEEccccccccccccccccEEcccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHccccccccc
cHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHEEEEccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEEEEEEEEEcccccEEEEEEcccccccccEEEEEccccccccEcEEEEEEEEccccccccEEEEEcHHHcEEEEEEccccccccccccccEEEEEEccccEEEEcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccEEEEEEcccccccccccccEEccHHHHcccccHHHHHHHHHHHHHHHHHHHccc
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELtqllsgpydkegavisitagaggtdaqtsfsgaevmpllpeesmdvqipeedleisfsraggkggqnvnKVETAVRIthiptgvtvrcTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQqirnyvfhpyklvkdvrtghetsdivsvmdgeLEPFIKSYLKYKYSmslsasdan
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKInlltdfktkmdDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISfsraggkggqnvnkvetavrithiptgvtvrcteERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTghetsdivsvmdgeLEPFIKSYLKYKYSMSLSASDAN
MQDFYNLRKDVEAASDRVEEIRASaglqqlekelaelemkaaDSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIksylkykysmslsasDAN
*******************************************************TLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGA**********************************************VNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYS*********
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAAD*SFWDNRAEA***********DKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV********************EWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSY***************
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSM********
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLS*****
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MQDFYNLRKDVEAASDRVExxxxxxxxxxxxxxxxxxxxxAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLxxxxxxxxxxxxxxxxxxxxxQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASDAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query307 2.2.26 [Sep-21-2011]
P74476372 Peptide chain release fac N/A no 0.488 0.403 0.697 6e-60
Q7U3W6374 Peptide chain release fac yes no 0.488 0.401 0.688 8e-58
B7K0A6365 Peptide chain release fac yes no 0.853 0.717 0.489 4e-55
O67695373 Peptide chain release fac yes no 0.941 0.774 0.337 6e-47
B2V5M0369 Peptide chain release fac yes no 0.872 0.726 0.359 1e-44
Q9CGX1365 Peptide chain release fac yes no 0.495 0.416 0.490 8e-41
A2RLF5365 Peptide chain release fac yes no 0.495 0.416 0.477 1e-40
Q02ZM8365 Peptide chain release fac yes no 0.495 0.416 0.477 1e-40
O83585368 Peptide chain release fac yes no 0.853 0.711 0.312 2e-40
A8AY61364 Peptide chain release fac N/A no 0.495 0.417 0.477 1e-39
>sp|P74476|RF2_SYNY3 Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prfB PE=3 SV=2 Back     alignment and function desciption
 Score =  231 bits (588), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 129/152 (84%)

Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
           QTSF+G EVMPLL EE++ + IP++DL+IS SRAGGKGGQNVNKVETAVRI H+PTG+ V
Sbjct: 215 QTSFAGVEVMPLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVRIVHLPTGLAV 274

Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
           RCT+ERSQL NK KAL+ LKAKLL++ EEQRA  I +IRGD V+A WG QIRNYVFHPY+
Sbjct: 275 RCTQERSQLQNKEKALAILKAKLLIVLEEQRAQAIAEIRGDMVEAAWGTQIRNYVFHPYQ 334

Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKY 295
           LVKD+RT  ET+D+  VMDGEL  FI++YL++
Sbjct: 335 LVKDLRTNVETTDVGGVMDGELSDFIEAYLRH 366
Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
>sp|Q7U3W6|RF2_SYNPX Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|B7K0A6|RF2_CYAP8 Peptide chain release factor 2 OS=Cyanothece sp. (strain PCC 8801) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|O67695|RF2_AQUAE Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|B2V5M0|RF2_SULSY Peptide chain release factor 2 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q9CGX1|RF2_LACLA Peptide chain release factor 2 OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|A2RLF5|RF2_LACLM Peptide chain release factor 2 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q02ZM8|RF2_LACLS Peptide chain release factor 2 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|O83585|RF2_TREPA Peptide chain release factor 2 OS=Treponema pallidum (strain Nichols) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|A8AY61|RF2_STRGC Peptide chain release factor 2 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=prfB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
224101237379 predicted protein [Populus trichocarpa] 0.534 0.432 0.920 1e-85
356531868 456 PREDICTED: peptide chain release factor 0.534 0.359 0.920 2e-85
225430898 454 PREDICTED: peptide chain release factor 0.517 0.350 0.949 3e-85
297735238 451 unnamed protein product [Vitis vinifera] 0.517 0.352 0.949 3e-85
46406291 453 putative translation releasing factor 2 0.527 0.357 0.932 3e-85
449485390237 PREDICTED: peptide chain release factor 0.527 0.683 0.932 4e-85
449442779 450 PREDICTED: peptide chain release factor 0.517 0.353 0.932 5e-85
255547508 458 peptide chain release factor, putative [ 0.524 0.351 0.925 6e-84
357507841 475 Peptide chain release factor [Medicago t 0.534 0.345 0.890 3e-83
255637443155 unknown [Glycine max] 0.504 1.0 0.922 1e-80
>gi|224101237|ref|XP_002312196.1| predicted protein [Populus trichocarpa] gi|222852016|gb|EEE89563.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/164 (92%), Positives = 160/164 (97%)

Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
           QTSFSG EVMPLLPEESMDV++PEEDLEIS SRAGGKGGQNVNKVETAVRITHIPTGVTV
Sbjct: 216 QTSFSGVEVMPLLPEESMDVELPEEDLEISTSRAGGKGGQNVNKVETAVRITHIPTGVTV 275

Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
           RCTEERSQL+NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK
Sbjct: 276 RCTEERSQLSNKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 335

Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASDAN 307
           LVKDVRTGHETSDI SVMDGEL+PFI++YLK+KYSM+LSAS+ N
Sbjct: 336 LVKDVRTGHETSDIASVMDGELDPFIRAYLKHKYSMTLSASEPN 379

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356531868|ref|XP_003534498.1| PREDICTED: peptide chain release factor 2-like [Glycine max] Back     alignment and taxonomy information
>gi|225430898|ref|XP_002276037.1| PREDICTED: peptide chain release factor 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735238|emb|CBI17600.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|46406291|emb|CAG25777.1| putative translation releasing factor 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449485390|ref|XP_004157153.1| PREDICTED: peptide chain release factor 2-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449442779|ref|XP_004139158.1| PREDICTED: peptide chain release factor 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255547508|ref|XP_002514811.1| peptide chain release factor, putative [Ricinus communis] gi|223545862|gb|EEF47365.1| peptide chain release factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357507841|ref|XP_003624209.1| Peptide chain release factor [Medicago truncatula] gi|355499224|gb|AES80427.1| Peptide chain release factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|255637443|gb|ACU19049.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
TAIR|locus:2158936456 HCF109 "high chlorophyll fluor 0.475 0.320 0.876 5.4e-115
TIGR_CMR|CHY_0163371 CHY_0163 "peptide chain releas 0.472 0.390 0.517 2.6e-57
TIGR_CMR|GSU_2278372 GSU_2278 "peptide chain releas 0.469 0.387 0.448 9.8e-48
UNIPROTKB|P66026371 prfB "Peptide chain release fa 0.469 0.388 0.438 1.1e-44
UNIPROTKB|Q3Z8Y6362 prfB "Peptide chain release fa 0.469 0.397 0.503 9.6e-44
TIGR_CMR|DET_0570362 DET_0570 "peptide chain releas 0.469 0.397 0.503 9.6e-44
TIGR_CMR|SPO_2585375 SPO_2585 "peptide chain releas 0.465 0.381 0.434 5.8e-40
TIGR_CMR|APH_0479376 APH_0479 "peptide chain releas 0.469 0.382 0.475 7.4e-40
TIGR_CMR|NSE_0604365 NSE_0604 "peptide chain releas 0.469 0.394 0.441 2.8e-38
TIGR_CMR|ECH_0705366 ECH_0705 "peptide chain releas 0.469 0.393 0.441 3.5e-38
TAIR|locus:2158936 HCF109 "high chlorophyll fluorescent 109" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 669 (240.6 bits), Expect = 5.4e-115, Sum P(2) = 5.4e-115
 Identities = 128/146 (87%), Positives = 140/146 (95%)

Query:   144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
             QTSFSG EVMPLLPEE++ ++IPEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV V
Sbjct:   293 QTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAV 352

Query:   204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
             RCTEERSQLANK +AL RLKAKL+VIAEEQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYK
Sbjct:   353 RCTEERSQLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYK 412

Query:   264 LVKDVRTGHETSDIVSVMDGELEPFI 289
             LVKDVRTGHETSDI SVMDG+L+PFI
Sbjct:   413 LVKDVRTGHETSDITSVMDGDLDPFI 438
GO:0003747 "translation release factor activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006415 "translational termination" evidence=IEA;ISS;IMP
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0006396 "RNA processing" evidence=IMP
GO:0009657 "plastid organization" evidence=IMP
TIGR_CMR|CHY_0163 CHY_0163 "peptide chain release factor 2, programmed frameshift" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2278 GSU_2278 "peptide chain release factor 2, programmed frameshift" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P66026 prfB "Peptide chain release factor 2" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q3Z8Y6 prfB "Peptide chain release factor 2" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0570 DET_0570 "peptide chain release factor 2, programmed frameshift" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2585 SPO_2585 "peptide chain release factor 2" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0479 APH_0479 "peptide chain release factor 2, programmed frameshift" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0604 NSE_0604 "peptide chain release factor 2, programmed frameshift" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0705 ECH_0705 "peptide chain release factor 2, programmed frameshift" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025035001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (454 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017183001
RecName- Full=Translation initiation factor IF-3;; IF-3 binds to the 30S ribosomal subunit and [...] (272 aa)
   •  • 0.652
GSVIVG00020546001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (258 aa)
•     • 0.603
GSVIVG00028236001
RecName- Full=Preprotein translocase secA subunit; (736 aa)
•  •  • 0.575
GSVIVG00033342001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (203 aa)
   •• • 0.533
GSVIVG00025786001
SubName- Full=Chromosome chr19 scaffold_35, whole genome shotgun sequence; (356 aa)
•   • • 0.486
GSVIVG00007283001
SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (682 aa)
   •  • 0.476
GSVIVG00025807001
RecName- Full=Translation initiation factor IF-2;; One of the essential components for the init [...] (607 aa)
  ••  • 0.472
GSVIVG00015443001
RecName- Full=Preprotein translocase secA subunit; (1045 aa)
•     • 0.461
GSVIVG00016542001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (136 aa)
•  •• • 0.444
GSVIVG00006883001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa)
•  •  • 0.443

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 1e-73
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 6e-62
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 1e-55
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 5e-52
pfam00472114 pfam00472, RF-1, RF-1 domain 8e-45
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 8e-40
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 1e-36
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 3e-36
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 3e-33
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 9e-32
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 4e-31
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 2e-29
PRK08179200 PRK08179, prfH, peptide chain release factor-like 2e-17
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 5e-17
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 2e-14
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 7e-14
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 3e-12
pfam03462115 pfam03462, PCRF, PCRF domain 4e-09
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 7e-09
smart00937116 smart00937, PCRF, This domain is found in peptide 7e-08
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 1e-04
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information 
 Score =  230 bits (588), Expect = 1e-73
 Identities = 73/153 (47%), Positives = 112/153 (73%), Gaps = 1/153 (0%)

Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
            TSF+  EV P + +++++++I  +DL I   R+ G GGQ+VNK ++AVRITHIPTG+ V
Sbjct: 212 HTSFASVEVYPEV-DDTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSAVRITHIPTGIVV 270

Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
           +C  ERSQ  NK  A+  LKAKL  +  E+RA+E   ++G+  +  WG QIR+YV HPY+
Sbjct: 271 QCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEKKEIGWGSQIRSYVLHPYQ 330

Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
           +VKD+RTG+ET +  +V+DG+L+ FI++YL+++
Sbjct: 331 MVKDLRTGYETGNTQAVLDGDLDGFIEAYLRWR 363

Length = 367
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|217573 pfam03462, PCRF, PCRF domain Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release factors Back     alignment and domain information
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 307
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
PRK08787313 peptide chain release factor 2; Provisional 100.0
KOG2726386 consensus Mitochondrial polypeptide chain release 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 100.0
PRK09256138 hypothetical protein; Provisional 99.88
KOG3429172 consensus Predicted peptidyl-tRNA hydrolase [Trans 99.63
PF03462115 PCRF: PCRF domain; InterPro: IPR005139 This domain 99.01
PRK10636638 putative ABC transporter ATP-binding protein; Prov 89.97
PRK11147635 ABC transporter ATPase component; Reviewed 82.0
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-83  Score=599.90  Aligned_cols=276  Identities=30%  Similarity=0.468  Sum_probs=261.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHH
Q 021839           26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII  105 (307)
Q Consensus        26 ~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el  105 (307)
                      +|+.+..|+.+|+.+|++|++.+|+++++++++|++.|.+++..|.+|++..+++.++.+|+.+  +.|++|.++|.+++
T Consensus         8 kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~--~~D~em~ema~~Ei   85 (363)
T COG0216           8 KLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAE--EKDPEMREMAEEEI   85 (363)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHH
Confidence            4677888999999999999999999999999999999999999999999999999999999876  36999999999999


Q ss_pred             HHHHHHHhHHH----HHhcCCCCCCCCCceEEEeeCCCCccc--------------------------------------
Q 021839          106 KELNKALDQFE----LTQLLSGPYDKEGAVISITAGAGGTDA--------------------------------------  143 (307)
Q Consensus       106 ~~l~~~l~~lE----l~~Lls~p~D~~naileI~aGaGG~ea--------------------------------------  143 (307)
                      .++++.+..++    +.+||+||+|.+||||||+||+||+||                                      
T Consensus        86 ~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEi  165 (363)
T COG0216          86 KELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEI  165 (363)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEE
Confidence            99999987775    677889999999999999999999999                                      


Q ss_pred             ----------------------------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccC
Q 021839          144 ----------------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVE  189 (307)
Q Consensus       144 ----------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~  189 (307)
                                                        |||+|||+|||+++ +..++.|+|+||+|+|||||||||||||+|+
T Consensus       166 i~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~e-e~~ei~I~~~DlrIDt~RsSGaGGQhVNtTd  244 (363)
T COG0216         166 IASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVE-EVEEIEINPKDLRIDTFRSSGAGGQHVNTTD  244 (363)
T ss_pred             EEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCC-cccccccChHHceeeeeecCCCCCCCcCccc
Confidence                                              99999999999994 3457999999999999999999999999999


Q ss_pred             ceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccCCccceeecCCCCccccc
Q 021839          190 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDV  268 (307)
Q Consensus       190 s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~-~~~g~~iRtY~~~~~~~v~Dh  268 (307)
                      |||||||+||||+|.||++||||+||++||+.|++||++.+.+++.++....|+.+++ ++|+++|||||| ||+|||||
T Consensus       245 SAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNf-PQnRVTDH  323 (363)
T COG0216         245 SAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNF-PQNRVTDH  323 (363)
T ss_pred             hhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCC-CCCcccch
Confidence            9999999999999999999999999999999999999999999999999999998887 799999999999 99999999


Q ss_pred             cccccccCcccccC-CCcHHHHHHHHHHHhhccccccc
Q 021839          269 RTGHETSDIVSVMD-GELEPFIKSYLKYKYSMSLSASD  305 (307)
Q Consensus       269 r~~~~~~~~~~vl~-G~l~~~i~~~~~~~~~~~~~~~~  305 (307)
                      |+|+++++|+.||+ |+||++|++++.+...+.|+++.
T Consensus       324 RI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L~~l~  361 (363)
T COG0216         324 RINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQLAELG  361 (363)
T ss_pred             hcccccccHHHHhccCcHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999 59999999999999888887653

>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 7e-29
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 3e-28
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 6e-28
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 2e-24
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 2e-24
3f1e_X378 Crystal Structure Of A Translation Termination Comp 2e-21
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 2e-21
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 2e-21
2wh1_Y351 Insights Into Translational Termination From The St 2e-21
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 2e-21
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 2e-19
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 1e-16
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 2e-14
2rsm_A115 Solution Structure And Sirna-Mediated Knockdown Ana 3e-05
4dh9_Y140 Crystal Structure Of Yaej Bound To The 70s Ribosome 4e-04
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 140 GTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPT 199
           G    TSFS A V P + ++ +D++I   DL I   RA G GGQ+VN+ E+AVRITHIPT
Sbjct: 210 GGRRHTSFSSAFVYPEV-DDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPT 268
Query: 200 GVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVF 259
           G+  +C  +RSQ  NK +A+ ++KAKL  +  +++ +E + +  +     WG QIR+YV 
Sbjct: 269 GIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVL 328
Query: 260 HPYKLVKDVRTGHETSDIVSVMDGELEPFI 289
              + +KD+RTG ET +  +V+DG L+ FI
Sbjct: 329 DDSR-IKDLRTGVETRNTQAVLDGSLDQFI 357
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|2RSM|A Chain A, Solution Structure And Sirna-Mediated Knockdown Analysis Of The Mitochondrial Disease-Related Protein C12orf65 (Ict2) Length = 115 Back     alignment and structure
>pdb|4DH9|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 2e-67
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 5e-29
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 3e-63
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 2e-31
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 7e-34
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 2e-33
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 2e-32
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 2e-32
2b3t_B360 RF-1, peptide chain release factor 1; translation 3e-31
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 1e-25
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 3e-20
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
 Score =  213 bits (545), Expect = 2e-67
 Identities = 68/163 (41%), Positives = 97/163 (59%), Gaps = 2/163 (1%)

Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
            TSF+G EV+P + +E ++V +  E+L I   RA G GGQ VN  ++AVR+ H+PTG+TV
Sbjct: 202 HTSFAGVEVIPEV-DEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITV 260

Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
            C   RSQ+ NK  AL  LKA+L  +  ++R  E+K +RG+    EWG QIR+YV     
Sbjct: 261 TCQTTRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPIEWGSQIRSYVLDK-N 319

Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASDA 306
            VKD RTG    D  +V+DG+L   I + L++K        + 
Sbjct: 320 YVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKAGRRQGTEEV 362
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 100.0
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.94
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.93
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.91
2lw1_A89 ABC transporter ATP-binding protein UUP; ABC REG s 96.42
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
Probab=100.00  E-value=4.1e-86  Score=634.98  Aligned_cols=292  Identities=33%  Similarity=0.585  Sum_probs=279.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 021839            1 MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDA   80 (307)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~   80 (307)
                      ||+.++++..++++..++..++.+|+++.+.+|+++|+.+|++|+||+||++|+++++|++.|+++|+.|..|++..+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~   80 (365)
T 1gqe_A            1 MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDV   80 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCCceEEEeeCCCCccc-----------------
Q 021839           81 VTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA-----------------  143 (307)
Q Consensus        81 ~~l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl~~Lls~p~D~~naileI~aGaGG~ea-----------------  143 (307)
                      ..+.+|+++  +.|++|+++|.+++..+++.++.+|+..||+||+|.+||||||+||+||+||                 
T Consensus        81 ~~~~el~~~--e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~  158 (365)
T 1gqe_A           81 SGLLELAVE--ADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAES  158 (365)
T ss_dssp             HHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999876  3599999999999999999999999999999999999999999999999999                 


Q ss_pred             -------------------------------------------------------cccccccccccCCCCCCCCCCCCCC
Q 021839          144 -------------------------------------------------------QTSFSGAEVMPLLPEESMDVQIPEE  168 (307)
Q Consensus       144 -------------------------------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~  168 (307)
                                                                             |||||+|+|+|++++ ++++.|+++
T Consensus       159 ~g~k~evl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~-~v~i~i~~~  237 (365)
T 1gqe_A          159 RGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPA  237 (365)
T ss_dssp             TTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBT-TBCCCCCGG
T ss_pred             CCCeEEEEecCCCCCCceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCc-ccccccCHH
Confidence                                                                   999999999999853 578999999


Q ss_pred             CceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 021839          169 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA  248 (307)
Q Consensus       169 dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~  248 (307)
                      ||+|+|+|||||||||||||+|+|||+|+||||+|+||++|||++||+.|+++|+++|++.+.+++.++.++.|+.+..+
T Consensus       238 dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i  317 (365)
T 1gqe_A          238 DLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDI  317 (365)
T ss_dssp             GEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCC
T ss_pred             HceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             ccCCccceeecCCCCccccccccccccCcccccCCCcHHHHHHHHHHH
Q 021839          249 EWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK  296 (307)
Q Consensus       249 ~~g~~iRtY~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~~i~~~~~~~  296 (307)
                      +||+|||||||+||+ |||||||++++|+++||+||||+||++++.|.
T Consensus       318 ~~G~~IRtY~f~~~r-VkDhRt~~~~~~l~~vldGdld~~I~a~l~~~  364 (365)
T 1gqe_A          318 GWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLKAG  364 (365)
T ss_dssp             CSCSEEEEEEGGGTE-EEETTTCCEESCHHHHHTTCCHHHHHHHHHTT
T ss_pred             CccCCeEeEECCCCe-eeccccCceECCHHHHhCCCHHHHHHHHHHhc
Confidence            999999999998877 99999999999999999999999999999763
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 307
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 4e-47
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 9e-37
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 3e-04
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 1e-35
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 2e-06
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 2e-17
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

 Score =  160 bits (405), Expect = 4e-47
 Identities = 84/358 (23%), Positives = 144/358 (40%), Gaps = 72/358 (20%)

Query: 7   LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETL--------- 57
           +   ++  ++R + +R        ++ L E+  +      W+    AQ            
Sbjct: 4   VNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAV 63

Query: 58  --------QALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELN 109
                   Q L DV   + L  +   +      + +L    +           S   +  
Sbjct: 64  VDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSA 123

Query: 110 KALDQFE----------------------------LTQLLSGPYDKEGAVISITAGAGGT 141
                 +                             T+++     +   + S+T    G 
Sbjct: 124 DCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGD 183

Query: 142 DA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSR 176
            A                          TSFS A V P + ++ +D++I   DL I   R
Sbjct: 184 YAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDD-IDIEINPADLRIDVYR 242

Query: 177 AGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRAS 236
           A G GGQ+VN+ E+AVRITHIPTG+  +C  +RSQ  NK +A+ ++KAKL  +  +++ +
Sbjct: 243 ASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNA 302

Query: 237 EIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
           E + +  +     WG QIR+YV    + +KD+RTG ET +  +V+DG L+ FI++ LK
Sbjct: 303 EKQAMEDNKSDIGWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLK 359
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.83
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-88  Score=653.49  Aligned_cols=288  Identities=33%  Similarity=0.581  Sum_probs=274.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021839            4 FYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTI   83 (307)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l   83 (307)
                      +++++..|.++.+++..|+++||++.++.|+++||.+|++|+||+||++|+++++|++.|+++|+.|..|++.++|+.++
T Consensus         1 ~~~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL   80 (362)
T d1gqea_           1 INPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL   80 (362)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCCceEEEeeCCCCccc--------------------
Q 021839           84 VKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA--------------------  143 (307)
Q Consensus        84 ~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl~~Lls~p~D~~naileI~aGaGG~ea--------------------  143 (307)
                      ++|+.++  +|+++.+++..++..+.+.++.+++.+||+||+|.+||||||||||||+||                    
T Consensus        81 ~Ela~ee--~deel~~e~~~~l~~l~~~l~~le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gw  158 (362)
T d1gqea_          81 LELAVEA--DDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF  158 (362)
T ss_dssp             HHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhh--hhHHHHHHHHHHHHHHhhhhhHHHHhhcccCcccccceEEEEEecCchhhHHHHHHHHHHHHHHHHHHcCC
Confidence            9998763  589999999999999999999999999999999999999999999999999                    


Q ss_pred             ----------------------------------------------------cccccccccccCCCCCCCCCCCCCCCce
Q 021839          144 ----------------------------------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLE  171 (307)
Q Consensus       144 ----------------------------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~  171 (307)
                                                                          |||||+|+|+|++++ ++++.|+++||+
T Consensus       159 k~eiid~~~~e~gG~K~v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~-~~~~~i~~~dl~  237 (362)
T d1gqea_         159 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPADLR  237 (362)
T ss_dssp             EEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBT-TBCCCCCGGGEE
T ss_pred             eEEEeccccCCccceeEEEEEEECccHHHHHHHhcCceeEEEecccCCCceEEEEEEEEEEeecCCC-ccceecChHHeE
Confidence                                                                999999999999854 578999999999


Q ss_pred             eeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccC
Q 021839          172 ISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWG  251 (307)
Q Consensus       172 i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~~g  251 (307)
                      |+|||||||||||||||+|||||||+||||+|.||++|||++||+.||++|++||++++.+++.++.+..++.+..++||
T Consensus       238 i~~~rs~g~GGQ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~g  317 (362)
T d1gqea_         238 IDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWG  317 (362)
T ss_dssp             EEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSC
T ss_pred             EEEeecCCCCccchhhhhceeEEEecCchhHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999998888777777777788999


Q ss_pred             CccceeecCCCCccccccccccccCcccccCCCcHHHHHHHHHH
Q 021839          252 QQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKY  295 (307)
Q Consensus       252 ~~iRtY~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~~i~~~~~~  295 (307)
                      +|||||||+|+ +|||||||++++|++.||+|+||+||++||..
T Consensus       318 ~~iRtY~~~~~-rv~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~  360 (362)
T d1gqea_         318 SQIRSYVLDDS-RIKDLRTGVETRNTQAVLDGSLDQFIEASLKA  360 (362)
T ss_dssp             SEEEEEEGGGT-EEEETTTCCEESCHHHHHTTCCHHHHHHHHHT
T ss_pred             CCccCccCCCC-cccccccCCeeCChhHHhCCCHHHHHHHHHHC
Confidence            99999999665 69999999999999999999999999999964
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure