Citrus Sinensis ID: 022045

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSFSS
cccccccccccccccccccccccccccccccccccccccccEEEEEcccEEccEEEEEEccccccccccccEEEEEEEEEcccEEEEEEEEEEEcccccEEEEEEEcccccHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccEEEEEEccccccccccccccccccccEEEEEEEEEcccccccEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccc
ccccccccccccccccccHHHHHcccccEcccccccccccccEEEEEEEEEEEEEEEEccccccccccccccEEEEEEEEcccEEEEEEEEEEEEccEEEEEEEEEcccccccHHHHHccccHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHHHcccccHHHHcccccEEEEEEEcccccEEcHHHHHccccccHHHHHccEEEEEEcccccccEEEEEcccccccccccEccccEEEEEcccccccccccccccccccccccccccccc
mshrkfehprhgslgflprkrasrhrgkvkafpkddpskpcrltaflgykAGMTHIVRdvekpgsklhkketceavtiietpplVVVGVVgyvktprgLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKkyetddgkKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAygffekqipidavfqkdemiDIIGvtkgkgyegvvtrwgvtrlprkthrgLRKVACIGAWHPARVSFTVAragqngyhhrteMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSFSS
mshrkfehprhgslgflprkrasrhrgkvkafpkddpskpcRLTAFLGYKAGMTHIVrdvekpgsklhKKETCeavtiietpplvvVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRrfyknwckskkkaftkytkkyetddgkkdiQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGvtkgkgyegvvtrwgvtrlprkthrglrKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSFSS
MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLvvvgvvgyvKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCkskkkaftkytkkyETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSFSS
****************************************CRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYET*****DIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIY********************YL**********
******E*PRHGSLGFLP*K********VKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI**********VNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWG****************CIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSF**
**********HGSLGFLPRK****************PSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLG*********MTEFDRSVYLLSSLMGSFSS
***************************KVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA**********F*RSVYLLS****SF**
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MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSFSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query303 2.2.26 [Sep-21-2011]
P35684389 60S ribosomal protein L3 yes no 0.990 0.771 0.797 1e-150
P22738390 60S ribosomal protein L3- yes no 0.990 0.769 0.819 1e-149
P17094389 60S ribosomal protein L3- no no 0.990 0.771 0.810 1e-145
P39023403 60S ribosomal protein L3 yes no 0.986 0.741 0.658 1e-121
P21531403 60S ribosomal protein L3 yes no 0.986 0.741 0.658 1e-121
Q8NKF4392 60S ribosomal protein L3 yes no 0.983 0.760 0.666 1e-121
P27659403 60S ribosomal protein L3 yes no 0.986 0.741 0.655 1e-120
P39872403 60S ribosomal protein L3 yes no 0.986 0.741 0.645 1e-119
Q4R5Q0403 60S ribosomal protein L3 N/A no 0.986 0.741 0.652 1e-119
P59671392 60S ribosomal protein L3 N/A no 0.983 0.760 0.644 1e-118
>sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2 Back     alignment and function desciption
 Score =  530 bits (1364), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/316 (79%), Positives = 281/316 (88%), Gaps = 16/316 (5%)

Query: 1   MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
           MSHRKFEHPRHGSLGFLPRKR+SRHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+V
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60

Query: 61  EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
           EKPGSKLHKKETCEAVTIIETPPLV+VG+V YVKTPRGLRSL +VWAQHL+EEVRRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120

Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR---------------KKAH 165
           NWCKSKKKAFTKY  KY++D GKK+IQ QLEKMKKY +++R               KKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180

Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
           LMEIQ+NGG++A KVD+ Y FFEK+IP+DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240

Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 285
           LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+YK+GK+ QESH+A T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT 300

Query: 286 EFDRSVYLLSSLMGSF 301
           EFDR+   ++  MG F
Sbjct: 301 EFDRTEKDITP-MGGF 315
The L3 protein is a component of the large subunit of cytoplasmic ribosomes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|P22738|RL32_ARATH 60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4 Back     alignment and function description
>sp|P17094|RL31_ARATH 60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5 Back     alignment and function description
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2 Back     alignment and function description
>sp|P21531|RL3_RAT 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3 Back     alignment and function description
>sp|Q8NKF4|RL3_ASPFU 60S ribosomal protein L3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rpl3 PE=1 SV=2 Back     alignment and function description
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=3 Back     alignment and function description
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2 Back     alignment and function description
>sp|Q4R5Q0|RL3_MACFA 60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3 Back     alignment and function description
>sp|P59671|RL3_NEUCR 60S ribosomal protein L3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
313586459389 60S ribosomal protein L3B [Hevea brasili 0.990 0.771 0.851 1e-157
313586457389 60S ribosomal protein L3A [Hevea brasili 0.990 0.771 0.851 1e-157
147833564389 hypothetical protein VITISV_039858 [Viti 0.990 0.771 0.841 1e-157
225460636397 PREDICTED: 60S ribosomal protein L3-like 0.990 0.755 0.841 1e-157
296081197 449 unnamed protein product [Vitis vinifera] 0.990 0.668 0.841 1e-156
350539715389 ribosomal protein L3 [Solanum lycopersic 0.986 0.768 0.840 1e-156
82623411389 ribosomal protein L3-like [Solanum tuber 0.986 0.768 0.840 1e-156
255566636389 60S ribosomal protein L3, putative [Rici 0.986 0.768 0.840 1e-155
37625023389 ribosomal protein L3A [Nicotiana tabacum 0.990 0.771 0.835 1e-155
359486157389 PREDICTED: 60S ribosomal protein L3 [Vit 0.990 0.771 0.860 1e-153
>gi|313586459|gb|ADR71240.1| 60S ribosomal protein L3B [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 269/316 (85%), Positives = 290/316 (91%), Gaps = 16/316 (5%)

Query: 1   MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
           MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDP+KPC+LTAFLGYKAGMTHIVR+V
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCKLTAFLGYKAGMTHIVREV 60

Query: 61  EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
           EKPGSKLHKKETCEAVTI+ETPP+V+VGVVGYVKTPRGLR+L TVWAQHL+EEVRRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIVETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEVRRRFYK 120

Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR---------------KKAH 165
           NWCKSKKKAFTKY+K+YETDDGKK IQAQLEK+KKY  V+R               KKAH
Sbjct: 121 NWCKSKKKAFTKYSKQYETDDGKKSIQAQLEKIKKYAHVVRVLAHTQIRKMKGLKQKKAH 180

Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
           LMEIQVNGG++AQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQVNGGTIAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240

Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 285
           LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA QESH+A+T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAGQESHTAIT 300

Query: 286 EFDRSVYLLSSLMGSF 301
           ++DR+   ++  MG F
Sbjct: 301 DYDRTEKDITP-MGGF 315

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|313586457|gb|ADR71239.1| 60S ribosomal protein L3A [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|147833564|emb|CAN63848.1| hypothetical protein VITISV_039858 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225460636|ref|XP_002265125.1| PREDICTED: 60S ribosomal protein L3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081197|emb|CBI18223.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|350539715|ref|NP_001233997.1| ribosomal protein L3 [Solanum lycopersicum] gi|38327504|gb|AAR17783.1| ribosomal protein L3 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|82623411|gb|ABB87120.1| ribosomal protein L3-like [Solanum tuberosum] Back     alignment and taxonomy information
>gi|255566636|ref|XP_002524302.1| 60S ribosomal protein L3, putative [Ricinus communis] gi|223536393|gb|EEF38042.1| 60S ribosomal protein L3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|37625023|gb|AAQ96335.1| ribosomal protein L3A [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|359486157|ref|XP_002263053.2| PREDICTED: 60S ribosomal protein L3 [Vitis vinifera] gi|297739519|emb|CBI29701.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
TAIR|locus:2200873390 RPL3B "R-protein L3 B" [Arabid 0.990 0.769 0.756 3.2e-129
TAIR|locus:2018605389 RP1 "ribosomal protein 1" [Ara 0.990 0.771 0.75 6.1e-126
ASPGD|ASPL0000001032392 rpl3 [Emericella nidulans (tax 0.980 0.757 0.594 1.7e-98
UNIPROTKB|P39023403 RPL3 "60S ribosomal protein L3 0.907 0.682 0.636 1.7e-98
UNIPROTKB|F1NEM8403 RPL3 "Uncharacterized protein" 0.914 0.687 0.628 3.5e-98
UNIPROTKB|F1NLW1402 RPL3 "Uncharacterized protein" 0.914 0.689 0.628 3.5e-98
RGD|735105403 Rpl3 "ribosomal protein L3" [R 0.907 0.682 0.636 3.5e-98
CGD|CAL0006304389 RPL3 [Candida albicans (taxid: 0.980 0.763 0.587 1.2e-97
UNIPROTKB|J9P6X5403 RPL3 "Uncharacterized protein" 0.907 0.682 0.629 1.2e-97
UNIPROTKB|Q59LS1389 RPL3 "Likely cytosolic ribosom 0.980 0.763 0.587 1.2e-97
TAIR|locus:2200873 RPL3B "R-protein L3 B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
 Identities = 239/316 (75%), Positives = 264/316 (83%)

Query:     1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
             MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDV
Sbjct:     1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60

Query:    61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
             EKPGSKLHKKETCEAVTIIETPP+         KTPRGLRSLCTVWAQHL+EE+RRRFYK
Sbjct:    61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120

Query:   121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR---------------KKAH 165
             NW               ET++GKKDIQ+QLEKMKKYC+VIR               KKAH
Sbjct:   121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180

Query:   166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
             L EIQ+NGG +A+KVD+A   FEKQ+P+DA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct:   181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240

Query:   226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 285
             LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+Y++GK  QE+HSAMT
Sbjct:   241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMT 300

Query:   286 EFDRSVYLLSSLMGSF 301
             E+DR+   ++  MG F
Sbjct:   301 EYDRTEKDITP-MGGF 315
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA;TAS
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA
GO:0052546 "cell wall pectin metabolic process" evidence=RCA
TAIR|locus:2018605 RP1 "ribosomal protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000001032 rpl3 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P39023 RPL3 "60S ribosomal protein L3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEM8 RPL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLW1 RPL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|735105 Rpl3 "ribosomal protein L3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
CGD|CAL0006304 RPL3 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6X5 RPL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q59LS1 RPL3 "Likely cytosolic ribosomal protein L3" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6FTJ2RL3_CANGANo assigned EC number0.63170.98010.7674yesno
P35684RL3_ORYSJNo assigned EC number0.79740.99000.7712yesno
P36584RL3B_SCHPONo assigned EC number0.67300.98010.7654yesno
A6UQJ0RL3_METVSNo assigned EC number0.37900.88440.8023yesno
P39872RL3_BOVINNo assigned EC number0.64570.98670.7419yesno
Q9UWG2RL3_METVANo assigned EC number0.37900.88440.8023yesno
Q6BXM5RL3_DEBHANo assigned EC number0.64440.98010.7634yesno
P22738RL32_ARATHNo assigned EC number0.81960.99000.7692yesno
P39023RL3_HUMANNo assigned EC number0.65830.98670.7419yesno
Q8NKF4RL3_ASPFUNo assigned EC number0.66660.98340.7602yesno
O28354RL3_ARCFUNo assigned EC number0.37050.87780.8036yesno
P40372RL3A_SCHPONo assigned EC number0.66980.98010.7654yesno
P50880RL3_CAEELNo assigned EC number0.61940.99000.7481yesno
P14126RL3_YEASTNo assigned EC number0.62850.98010.7674yesno
P34113RL3_DICDINo assigned EC number0.61990.99330.7562yesno
Q759R7RL3_ASHGONo assigned EC number0.63490.98010.7674yesno
O16797RL3_DROMENo assigned EC number0.61050.99000.7211yesno
Q6LX10RL3_METMPNo assigned EC number0.36820.88440.8023yesno
P27659RL3_MOUSENo assigned EC number0.65510.98670.7419yesno
Q6CJR7RL3_KLULANo assigned EC number0.62220.98010.7674yesno
P21531RL3_RATNo assigned EC number0.65830.98670.7419yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
PTZ00103390 PTZ00103, PTZ00103, 60S ribosomal protein L3; Prov 0.0
PRK04231337 PRK04231, rpl3p, 50S ribosomal protein L3P; Review 2e-86
TIGR03626330 TIGR03626, L3_arch, archaeal ribosomal protein L3 2e-80
pfam00297199 pfam00297, Ribosomal_L3, Ribosomal protein L3 2e-64
COG0087218 COG0087, RplC, Ribosomal protein L3 [Translation, 1e-44
PRK00001210 PRK00001, rplC, 50S ribosomal protein L3; Validate 2e-05
TIGR03625202 TIGR03625, L3_bact, 50S ribosomal protein L3, bact 7e-05
>gnl|CDD|240267 PTZ00103, PTZ00103, 60S ribosomal protein L3; Provisional Back     alignment and domain information 
 Score =  508 bits (1310), Expect = 0.0
 Identities = 213/302 (70%), Positives = 251/302 (83%), Gaps = 18/302 (5%)

Query: 1   MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
           MSHRKFEHPRHGSLGFLPRKR  RHRG++++FPKDDP++P  LTAF+GYKAGMTHIVRDV
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRCRRHRGRIRSFPKDDPTQPPHLTAFMGYKAGMTHIVRDV 60

Query: 61  EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
           ++PGSKLHKKE  EAVTIIE PP+VVVG+VGY +TPRGLR+L TVWA HL++E RRRFYK
Sbjct: 61  DRPGSKLHKKEVVEAVTIIEAPPMVVVGIVGYRETPRGLRALTTVWAHHLSDEFRRRFYK 120

Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
           NW KSKKKAFTKY K   T   KK  +  L+++KKYC+VIR              KKAH+
Sbjct: 121 NWYKSKKKAFTKYKKFAAT---KKAEERTLKRIKKYCSVIRVIAHTQPSKLPLGQKKAHV 177

Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
           MEIQVNGGSVA+KVDFA    EK++P+D+VFQ++EMID+IGVTKG G+EGVV RWGVTRL
Sbjct: 178 MEIQVNGGSVAEKVDFAKSLLEKEVPVDSVFQQNEMIDVIGVTKGHGFEGVVKRWGVTRL 237

Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
           PRKTHRGLRKVACIGAWHPARV +TV RAGQ+GYHHRTE+NKKIY++G A  + ++A TE
Sbjct: 238 PRKTHRGLRKVACIGAWHPARVQYTVPRAGQHGYHHRTELNKKIYRIGVAE-DPNNATTE 296

Query: 287 FD 288
            D
Sbjct: 297 AD 298

Length = 390
>gnl|CDD|235260 PRK04231, rpl3p, 50S ribosomal protein L3P; Reviewed Back     alignment and domain information
>gnl|CDD|234286 TIGR03626, L3_arch, archaeal ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|144036 pfam00297, Ribosomal_L3, Ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|223165 COG0087, RplC, Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234564 PRK00001, rplC, 50S ribosomal protein L3; Validated Back     alignment and domain information
>gnl|CDD|234285 TIGR03625, L3_bact, 50S ribosomal protein L3, bacterial Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 303
PTZ00103390 60S ribosomal protein L3; Provisional 100.0
PRK04231337 rpl3p 50S ribosomal protein L3P; Reviewed 100.0
TIGR03626330 L3_arch archaeal ribosomal protein L3. This model 100.0
KOG0746384 consensus 60S ribosomal protein L3 and related pro 100.0
PF00297263 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR0 100.0
CHL00143207 rpl3 ribosomal protein L3; Validated 100.0
TIGR03625202 L3_bact 50S ribosomal protein L3, bacterial. This 100.0
COG0087218 RplC Ribosomal protein L3 [Translation, ribosomal 100.0
PRK00001210 rplC 50S ribosomal protein L3; Validated 100.0
KOG3141310 consensus Mitochondrial/chloroplast ribosomal prot 100.0
>PTZ00103 60S ribosomal protein L3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-100  Score=733.33  Aligned_cols=298  Identities=72%  Similarity=1.225  Sum_probs=276.6

Q ss_pred             CCCCCCCCCCCCCCCCccccccccCCCCccCCCCCCCCCCceeeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEE
Q 022045            1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE   80 (303)
Q Consensus         1 m~~~k~~~pr~gsl~~~prkra~~~~p~~~~wP~~~~~~~~~~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVle   80 (303)
                      |||||||+||||||||+|||||+++.|+|++||+||.+.+|+++||+|||+|||||+.+||+|+|+++|+++++||||||
T Consensus         1 MshRk~~~PR~GSLgf~PRKRa~~~~~rvrswP~dd~~~~p~L~aF~GyKAGMTHvv~~~drp~S~~~~kEv~~~VTIiE   80 (390)
T PTZ00103          1 MSHRKFEHPRHGSLGFLPRKRCRRHRGRIRSFPKDDPTQPPHLTAFMGYKAGMTHIVRDVDRPGSKLHKKEVVEAVTIIE   80 (390)
T ss_pred             CCCCCCCCCCCCcCCcCCccccccCCCCcccCCCcCCCCCceEeeeeeeccCCeEEEEecCCCCCCcCCCeEEeeeEEEe
Confidence            99999999999999999999999999999999998866789999999999999999999999999999999999999999


Q ss_pred             eCCeEEEEEeeeeeCCCCcccceeeccccchHHHHhhhhccccccccccccccccccccCCCcccCHHHHHHHhhhcccc
Q 022045           81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI  160 (303)
Q Consensus        81 v~p~~V~~i~~y~kt~~Gy~av~~~~~~~~~~~~~r~~~k~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~v  160 (303)
                      +||+.|++++||.+|+.|+.++.++|+++|++||.|++||+|+.+...+|..+..++..   ....+..++.+.+.+.+|
T Consensus        81 tPPm~V~GirgY~~tp~Gl~~l~~vwA~~l~~e~~rr~yk~~~~s~k~af~k~~~~~~~---~~~~~~~~~~l~k~~~~I  157 (390)
T PTZ00103         81 APPMVVVGIVGYRETPRGLRALTTVWAHHLSDEFRRRFYKNWYKSKKKAFTKYKKFAAT---KKAEERTLKRIKKYCSVI  157 (390)
T ss_pred             CCCeEEEEEEEEEECCCCcEEeEEEeeccCcHHHhhhhccccchhhhhhhhhhhhhhcc---hhhHHHHHHHHhhcccEE
Confidence            99999999999999999999999999999999999999999999999999876554211   123455566666555233


Q ss_pred             c--------------CCCeEEEEEecCCCchhhhhhhhcccCccccccccccCCceEeEEEEeeccccccceEeeccCCC
Q 022045          161 R--------------KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL  226 (303)
Q Consensus       161 ~--------------~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~Gq~VDV~GvTKGKGFqGv~KR~gf~g~  226 (303)
                      +              +|++|+|++|+|++++++++||...||++|+++|+|++||+|||+|+|||||||||||||||+++
T Consensus       158 Rvi~hTqp~~~~l~kKkp~imEiqv~GGsv~~k~d~a~~llgk~i~v~dvF~~ge~VDVigvTKGKGfqGvvKRwg~~~~  237 (390)
T PTZ00103        158 RVIAHTQPSKLPLGQKKAHVMEIQVNGGSVAEKVDFAKSLLEKEVPVDSVFQQNEMIDVIGVTKGHGFEGVVKRWGVTRL  237 (390)
T ss_pred             EEEEEcchhhcCcCCcCccEEEEeecCCCHHHHHHHHHHHhcCeechhhhccCCCEeeeEEEEcCCccccCeeccccCCC
Confidence            3              67899999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCccccCCCCCCcccCCcCCCCCCCeeeeeeceEEEEEccCccccCcccccccCCcccccCCCCCCCC
Q 022045          227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSFSS  303 (303)
Q Consensus       227 p~ksH~~hR~~GSiG~~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~~~~~~~~~~~~~~~~~~i~~p~ggf~~  303 (303)
                      |+++|+.||++||||+|+|+||++|++||||||||+||++||+|++|+.+ ++..+|+|++|++.++|| |+|||+|
T Consensus       238 p~ktH~~~RkvGsiG~w~P~RV~~~v~~aGQmG~h~rTe~Nk~I~rI~~~-~~~~~~~t~~~~~~~~It-P~GGF~h  312 (390)
T PTZ00103        238 PRKTHRGLRKVACIGAWHPARVQYTVPRAGQHGYHHRTELNKKIYRIGVA-EDPNNATTEADLTEKTIT-PMGGFPH  312 (390)
T ss_pred             CccccCCCCCCCccCCCCCCcccCCCccCcCCCCceEEEeccEEEEEcCC-CCcccccccccccccccc-cCCCccc
Confidence            96699999999999999999999999999999999999999999999986 667799999999999999 9999997

>PRK04231 rpl3p 50S ribosomal protein L3P; Reviewed Back     alignment and domain information
>TIGR03626 L3_arch archaeal ribosomal protein L3 Back     alignment and domain information
>KOG0746 consensus 60S ribosomal protein L3 and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00297 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR000597 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>CHL00143 rpl3 ribosomal protein L3; Validated Back     alignment and domain information
>TIGR03625 L3_bact 50S ribosomal protein L3, bacterial Back     alignment and domain information
>COG0087 RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00001 rplC 50S ribosomal protein L3; Validated Back     alignment and domain information
>KOG3141 consensus Mitochondrial/chloroplast ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
3izr_C389 Localization Of The Large Subunit Ribosomal Protein 1e-137
2zkr_b403 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-106
3izs_C388 Localization Of The Large Subunit Ribosomal Protein 5e-94
3o58_C387 Yeast 80s Ribosome. This Entry Consists Of The 60s 5e-94
1s1i_C386 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-93
3zf7_f 429 High-resolution Cryo-electron Microscopy Structure 1e-91
3jyw_C362 Structure Of The 60s Proteins For Eukaryotic Riboso 2e-91
4a17_B391 T.Thermophila 60s Ribosomal Subunit In Complex With 1e-83
1ml5_e338 Crystal Structure Of The Ribosome At 5.5 A Resoluti 3e-40
1s72_B338 Refined Crystal Structure Of The Haloarcula Marismo 8e-40
1jj2_B337 Fully Refined Crystal Structure Of The Haloarcula M 8e-40
1ffk_B337 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-39
3j21_C365 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-38
>pdb|3IZR|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 389 Back     alignment and structure 
Iteration: 1

 Score =  483 bits (1244), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/316 (73%), Positives = 258/316 (81%), Gaps = 16/316 (5%)
Query: 1   MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
           MSHRKFEHPRHGSLGFLPRKR SRHRGKVK+FPKDD  KPC LTAFLGYKAGMTHIVR+V
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREV 60
Query: 61  EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
           EKPGSKLHKKETCEAVTIIETPPL         KTPRGLR+L +VWAQHL+E+VRRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR---------------KKAH 165
           NWC              ++D GKK+IQ QLEKMKKY T++R               KKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIRKMKGLKQKKAH 180
Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
           LMEIQVNGG++A KVD+ Y FFEK++P++AVFQKDEM+DIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTR 240
Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 285
           LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKKIYK+GK+ QESH A T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMGKSGQESHEACT 300
Query: 286 EFDRSVYLLSSLMGSF 301
           EFDR+   ++  MG F
Sbjct: 301 EFDRTEKDITP-MGGF 315
>pdb|2ZKR|BB Chain b, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 403 Back     alignment and structure
>pdb|3IZS|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 388 Back     alignment and structure
>pdb|3O58|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. Length = 387 Back     alignment and structure
>pdb|1S1I|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 386 Back     alignment and structure
>pdb|3ZF7|FF Chain f, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 429 Back     alignment and structure
>pdb|3JYW|C Chain C, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 362 Back     alignment and structure
>pdb|4A17|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 391 Back     alignment and structure
>pdb|1ML5|EE Chain e, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 338 Back     alignment and structure
>pdb|1S72|B Chain B, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 338 Back     alignment and structure
>pdb|1JJ2|B Chain B, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 337 Back     alignment and structure
>pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 337 Back     alignment and structure
>pdb|3J21|C Chain C, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 365 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
3iz5_C389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 1e-121
2zkr_b403 60S ribosomal protein L3; protein-RNA complex, 60S 1e-115
4a17_B391 RPL3, ribosomal protein L3; eukaryotic ribosome, r 1e-111
3u5e_B387 60S ribosomal protein L3; translation, ribosome, r 1e-109
1vq8_B338 50S ribosomal protein L3P; ribosome 50S, protein-p 1e-104
2ftc_C211 L3MT, MRP-L3, mitochondrial 39S ribosomal protein 7e-08
3v2d_E206 50S ribosomal protein L3; ribosome associated inhi 5e-07
2zjr_B211 50S ribosomal protein L3; ribosome, large ribosoma 7e-07
3r8s_D209 50S ribosomal protein L3; protein biosynthesis, RN 9e-07
3bbo_F259 Ribosomal protein L3; large ribosomal subunit, spi 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 403 Back     alignment and structure
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B Length = 391 Back     alignment and structure
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 3izc_C 3izs_C 1s1i_C 3jyw_C Length = 387 Back     alignment and structure
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Length = 338 Back     alignment and structure
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 211 Back     alignment and structure
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ... Length = 206 Back     alignment and structure
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ... Length = 211 Back     alignment and structure
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ... Length = 209 Back     alignment and structure
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 259 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
3u5e_B387 60S ribosomal protein L3; translation, ribosome, r 100.0
3iz5_C389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 100.0
4a17_B391 RPL3, ribosomal protein L3; eukaryotic ribosome, r 100.0
2zkr_b403 60S ribosomal protein L3; protein-RNA complex, 60S 100.0
3j21_C365 50S ribosomal protein L3P; archaea, archaeal, KINK 100.0
1vq8_B338 50S ribosomal protein L3P; ribosome 50S, protein-p 100.0
2ftc_C211 L3MT, MRP-L3, mitochondrial 39S ribosomal protein 100.0
3r8s_D209 50S ribosomal protein L3; protein biosynthesis, RN 100.0
3v2d_E206 50S ribosomal protein L3; ribosome associated inhi 100.0
2zjr_B211 50S ribosomal protein L3; ribosome, large ribosoma 100.0
3bbo_F259 Ribosomal protein L3; large ribosomal subunit, spi 100.0
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C Back     alignment and structure
Probab=100.00  E-value=2.6e-104  Score=760.95  Aligned_cols=299  Identities=66%  Similarity=1.135  Sum_probs=280.8

Q ss_pred             CCCCCCCCCCCCCCCCccccccccCCCCccCCCCCCCCCCceeeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEE
Q 022045            1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE   80 (303)
Q Consensus         1 m~~~k~~~pr~gsl~~~prkra~~~~p~~~~wP~~~~~~~~~~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVle   80 (303)
                      |||||||+||||||||+|||||++|.|+|++||+||+++||+++||+|||+|||||+.++|+|+|+++|+++++||||||
T Consensus         1 mshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEvv~~VTivE   80 (387)
T 3u5e_B            1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVD   80 (387)
T ss_dssp             -CCCSSCCCCSSCGGGCCCCCCSCSSCCCCCCCCCCTTSCCCCSEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEE
T ss_pred             CCcccCCCCCCCCCccCccccccccCCCcccCCCCCCCCCceeeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEe
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             eCCeEEEEEeeeeeCCCCcccceeeccccchHHHHhhhhccccccccccccccccccccCCCcccCHHHHHHHhhhcccc
Q 022045           81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI  160 (303)
Q Consensus        81 v~p~~V~~i~~y~kt~~Gy~av~~~~~~~~~~~~~r~~~k~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~v  160 (303)
                      +||++|++++||.+|+.|+.++.++|++||++||.|+||||||.+...+|..+.+++.+.+  +..+.+++.+++++..|
T Consensus        81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~--~~~~~~~~~~~k~~~vi  158 (387)
T 3u5e_B           81 TPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDG--AGIERELARIKKYASVV  158 (387)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCTTTSCCCTTTTTGGGGSSSS--HHHHHHHHHHHHSCSEE
T ss_pred             cCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcccchhhhhhhhhhcccccchh--HHHHHHHHHhhhcccEE
Confidence            9999999999999999999999999999999999999999999999999988877653211  34556677777765533


Q ss_pred             c--------------CCCeEEEEEecCCCchhhhhhhhcccCccccccccccCCceEeEEEEeeccccccceEeeccCCC
Q 022045          161 R--------------KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL  226 (303)
Q Consensus       161 ~--------------~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~Gq~VDV~GvTKGKGFqGv~KR~gf~g~  226 (303)
                      +              +|+||+|++|+|+++++++|||...+|++|+++|+|++||+|||+|+|||||||||||||||+++
T Consensus       159 Rvi~hTqp~l~~l~qKK~~imEiqV~Ggsv~~k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~  238 (387)
T 3u5e_B          159 RVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKL  238 (387)
T ss_dssp             EEEEECCGGGSSCSCCSCCEEEEECCSSCHHHHHHHHHHTTTCEECGGGTCCTTCEEEEEEECCCCCEECHHHHHCCCCC
T ss_pred             EEEEeccccccCccccCceeEEEEecCCCHHHHHHHHHhccCCEechHHhccCCCEEEEEEEEcCccceeeeeecccCCC
Confidence            3              78999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCccccCCCCCCcccCCcCCCCCCCeeeeeeceEEEEEccCccccCcccccccCCcccccCCCCCCCC
Q 022045          227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSFSS  303 (303)
Q Consensus       227 p~ksH~~hR~~GSiG~~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~~~~~~~~~~~~~~~~~~i~~p~ggf~~  303 (303)
                      |++||+.||++||||+|+|+|||+|++||||||||+||++||+|++||++ .+.+||+|||||++++|| |+|||+|
T Consensus       239 p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~-~~~~~~~t~~d~t~k~It-P~GGF~h  313 (387)
T 3u5e_B          239 PRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG-DDEANGATSFDRTKKTIT-PMGGFVH  313 (387)
T ss_dssp             CTTCTTCSSSCSCCCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEECCS-SCSCSSCCTTTCCCCCSC-CTTCBTT
T ss_pred             CccccCCCCCCcccCCCCCCcccCCCccCCCCCCceEEEeccEEEEEcCC-cccccccccccccccccc-CCCCccc
Confidence            99999999999999999999999999999999999999999999999998 556899999999999999 9999997
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B Back     alignment and structure
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Back     alignment and structure
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ... Back     alignment and structure
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ... Back     alignment and structure
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ... Back     alignment and structure
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 303
d1vqob1337 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon 2e-80
d2gycb1209 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherich 1e-21
d2j01e1205 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus t 6e-18
d2zjrb1205 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococc 8e-15
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 337 Back     information, alignment and structure

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  244 bits (625), Expect = 2e-80
 Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 6/280 (2%)

Query: 5   KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
           +   PR GSLGF PRKR++    +  ++P DD      +  F GYKAGMTH+V   ++P 
Sbjct: 2   QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQP--GVQGFAGYKAGMTHVVLVNDEPN 59

Query: 65  SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
           S     E    VT+IETPP+  V +  Y  TP G R L  VW    + E+ R        
Sbjct: 60  SPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDH 119

Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAY 184
               A  +    +E  D                +V +KK  +ME +V GGSV+ ++D A 
Sbjct: 120 DPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHAL 179

Query: 185 GFFE--KQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACI 240
              E   +  ++ +F+  E  D+ GVTKGKG +G V RWGV +   K  R    R++  +
Sbjct: 180 DIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNL 239

Query: 241 GAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES 280
           G W+P+RV  TV + GQ GYH RTE+NK++  +G+  + +
Sbjct: 240 GPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPT 279
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Length = 205 Back     information, alignment and structure
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]} Length = 205 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
d1vqob1337 Ribosomal protein L3 {Archaeon Haloarcula marismor 100.0
d2zjrb1205 Ribosomal protein L3 {Deinococcus radiodurans [Tax 100.0
d2gycb1209 Ribosomal protein L3 {Escherichia coli [TaxId: 562 100.0
d2j01e1205 Ribosomal protein L3 {Thermus thermophilus [TaxId: 100.0
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3.2e-85  Score=623.85  Aligned_cols=262  Identities=36%  Similarity=0.626  Sum_probs=224.6

Q ss_pred             CCCCCCCCCCCCccccccccCCCCccCCCCCCCCCCceeeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEEeCCe
Q 022045            5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPL   84 (303)
Q Consensus         5 k~~~pr~gsl~~~prkra~~~~p~~~~wP~~~~~~~~~~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVlev~p~   84 (303)
                      |+|+||||||||||||||+++.||+++||+++  .++.++||||||+||||||++||+++|+++|+++++||||||++||
T Consensus         2 k~~~PR~GSl~f~PRkRa~~~~~rv~s~p~~~--~~~~~~G~iG~KvGMT~v~~~d~~~~S~~~gk~i~vPVTVIe~~p~   79 (337)
T d1vqob1           2 QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDD--GQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPM   79 (337)
T ss_dssp             CCCCCCSSCSSSCSCCCCSCSSCCCSCCCCSC--SSCEECCEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEECCCE
T ss_pred             CCCCCCcccCCcCccccccccCCCcccCcccC--CCcceEEEEEEccCceEEEEeCCCcCCcccCceeEeeeEEEEcCCc
Confidence            68999999999999999999999999999985  4689999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeeeeCCCCcccceeeccccchHHHHhhhhccccccccccccccccccccCCCcccCHHHHHHHhh---------
Q 022045           85 VVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKK---------  155 (303)
Q Consensus        85 ~V~~i~~y~kt~~Gy~av~~~~~~~~~~~~~r~~~k~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k---------  155 (303)
                      +|+|+++|.++.++...+.++|++++++++.|.+.+.+     ..+.            +.....+..+..         
T Consensus        80 ~V~~vkt~e~dgy~a~qlg~~~~~~~~~~~~r~~~~~~-----~~~~------------k~~~~~~k~~~~~~~~~~vrv  142 (337)
T d1vqob1          80 RAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPE-----DHDP------------DAAEEQIRDAHEAGDLGDLRL  142 (337)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCS-----SCCH------------HHHHHHHHHHHHHTCEEEEEE
T ss_pred             eEEEEEEEecCCCceEEEEEEEccccchhhhcccchhh-----ccch------------hhcchhhhhhhhhcccceEEE
Confidence            99999998888665556668899999988877653221     1110            000111111111         


Q ss_pred             ---------hcccccCCCeEEEEEecCCCchhhhhhhhc--ccCccccccccccCCceEeEEEEeeccccccceEeeccC
Q 022045          156 ---------YCTVIRKKAHLMEIQVNGGSVAQKVDFAYG--FFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT  224 (303)
Q Consensus       156 ---------~~~~v~~k~~l~E~~v~~~~~~~~~~~a~~--~lG~~i~v~~vF~~Gq~VDV~GvTKGKGFqGv~KR~gf~  224 (303)
                               .++ ..+|++|+||+|++++++++++|+..  ++|++|.++|+|++||+|||+|+|||||||||||||||+
T Consensus       143 i~~tqp~~~~~~-~~KKp~v~E~~v~Gg~~~e~~~~~~~~~~~G~ei~v~dvF~~G~~VDV~g~TKGKGFqGvvKR~gf~  221 (337)
T d1vqob1         143 ITHTVPDAVPSV-PKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQ  221 (337)
T ss_dssp             EEECCGGGCTTS-CCCSCCEEEEEEESSCHHHHHHHHHHHHHHTCEECGGGTCCTTCEEEEEEECCCCCEECHHHHHCCC
T ss_pred             Eeeecccccccc-ccccchheeeeccCCchhhhhhhhhhhhccccEEEeeheecCCCEEEEEEEecccccccceEeeeec
Confidence                     111 12789999999999999999988765  559999999999999999999999999999999999999


Q ss_pred             CCCCCCcC---CCCCCccccCCCCCCcccCCcCCCCCCCeeeeeeceEEEEEccCccccCcccccccCCcccccCCCCCC
Q 022045          225 RLPRKTHR---GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSF  301 (303)
Q Consensus       225 g~p~ksH~---~hR~~GSiG~~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~~~~~~~~~~~~~~~~~~i~~p~ggf  301 (303)
                      ++| ++|+   .||++||||+|+|+|||||++||||||||+||++||+|++|+++               .+|| |+|||
T Consensus       222 ~~p-~sHg~~~~hR~~GsiG~~~PgRV~kg~kmaGqmG~~~rT~~Nl~IvkI~~~---------------~~i~-~~gGf  284 (337)
T d1vqob1         222 KRK-GKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG---------------DEPT-VDGGF  284 (337)
T ss_dssp             CCC-GGGGSSSCSSCCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEEE---------------STTC-CTTCB
T ss_pred             ccc-cccCCCccccCCcccCCCCCCceecccccCCccCCccEEEeCcEEEEEccc---------------cccc-ccCCc
Confidence            999 7874   68999999999999999999999999999999999999999965               3799 99999


Q ss_pred             CC
Q 022045          302 SS  303 (303)
Q Consensus       302 ~~  303 (303)
                      +|
T Consensus       285 ~~  286 (337)
T d1vqob1         285 VN  286 (337)
T ss_dssp             TT
T ss_pred             ee
Confidence            97
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure