Citrus Sinensis ID: 022046

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCKKSCSRF
cccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEccccccccccccccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHccccccEEEEEccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHccccEEEEEEcccccccccc
cccccEEEcHHHHHHHHHHccccHHHHHHHHHHHHHHccEccccccccEEEEEEccccEEEEEcEccccccHHHcEcHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHccEccHHHcEEEEccccccccccccHHHHccccccHHHccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHcEcccccccEEEEEEEccccEEEEEcEccccccccEcHHHHHHHHHHHccccccccccHHHHEEEEEEEcccccEcHHHHHHHHHHHHccccEEEEEEEccccccccc
MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAqtlarppiskfhvgavglgssgriflggnvefpglplhqsiHAEQFLITNLIlnaeprlqhlavsaapcghCRQFLQElrntsdinicitsinsnerkyhplshllpdrfgpndlldkdvplllethqngmsfnlcngqipetenpKERLKYAALEAAnkshapyskcpsgvaimdcegniykgsymesaaynpslgPVQAALVAYLAaggsgggggGYERIVAAALVEKEDAVVRQEHAARLLLQVIspkcefnvfhcgckkscsrf
MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKshapyskcpsgvAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCKKSCSRF
MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAggsggggggYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCKKSCSRF
********************GLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG**************************YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA*************IVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCK******
***PRFV*EAAE**********TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCKK*****
MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCKKSCSRF
*ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCKK*C***
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MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCKKSCSRF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query303 2.2.26 [Sep-21-2011]
Q2NUD2309 Cytidine deaminase OS=Sod yes no 0.874 0.857 0.376 6e-42
B4ESY3294 Cytidine deaminase OS=Pro yes no 0.719 0.741 0.409 1e-40
Q6D3B4296 Cytidine deaminase OS=Erw yes no 0.841 0.861 0.385 1e-39
A6TBN1294 Cytidine deaminase OS=Kle yes no 0.851 0.877 0.375 2e-39
B2VIF3296 Cytidine deaminase OS=Erw yes no 0.696 0.712 0.413 2e-39
Q7N6K3294 Cytidine deaminase OS=Pho yes no 0.864 0.891 0.383 3e-39
A8GC32294 Cytidine deaminase OS=Ser yes no 0.854 0.880 0.368 5e-39
B5XP65294 Cytidine deaminase OS=Kle yes no 0.851 0.877 0.375 2e-38
Q7MK48295 Cytidine deaminase OS=Vib yes no 0.844 0.867 0.35 2e-38
Q8DA31295 Cytidine deaminase OS=Vib yes no 0.844 0.867 0.35 3e-38
>sp|Q2NUD2|CDD_SODGM Cytidine deaminase OS=Sodalis glossinidius (strain morsitans) GN=cdd PE=3 SV=1 Back     alignment and function desciption
 Score =  171 bits (433), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 104/276 (37%), Positives = 150/276 (54%), Gaps = 11/276 (3%)

Query: 8   IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
           + A + + + Q  GL    L  TL+  A   A  P+S F+VGA+  G SG ++ G N+EF
Sbjct: 33  LSAPQVKELMQAGGLDEDALCFTLLPLAAAYAVTPLSHFNVGAIACGISGNLYFGANMEF 92

Query: 68  PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
              PL Q++HAEQ  I +  L  E RL+ L V+  PCGHCRQF+ EL + +D+ IC+   
Sbjct: 93  LAAPLQQTVHAEQSAIAHAWLRGEKRLRALTVNYTPCGHCRQFMNELNSGTDLIICLP-- 150

Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
              ER    L+  LPD FGP DL  + + L    H    +  L +     + +  + L  
Sbjct: 151 ---ERSAATLASYLPDAFGPRDLAIQSLLLDEIDHAFAAAAWLDHDLSAPSPDDNDPLVS 207

Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
            AL+AA++SHAPYS+  SGVA+   +G +Y G Y E+AA+NPSL P+Q AL+   AAG  
Sbjct: 208 TALDAASRSHAPYSQSHSGVALQTQDGCVYAGRYAENAAFNPSLPPLQTALILMNAAGAD 267

Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
                   +I  A L E+++A + Q  A    L  +
Sbjct: 268 D------RQIRRAVLAERQNAPITQWPATNATLAAL 297
This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
Sodalis glossinidius (strain morsitans) (taxid: 343509)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 5
>sp|B4ESY3|CDD_PROMH Cytidine deaminase OS=Proteus mirabilis (strain HI4320) GN=cdd PE=3 SV=1 Back     alignment and function description
>sp|Q6D3B4|CDD_ERWCT Cytidine deaminase OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=cdd PE=3 SV=1 Back     alignment and function description
>sp|A6TBN1|CDD_KLEP7 Cytidine deaminase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=cdd PE=3 SV=1 Back     alignment and function description
>sp|B2VIF3|CDD_ERWT9 Cytidine deaminase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=cdd PE=3 SV=1 Back     alignment and function description
>sp|Q7N6K3|CDD_PHOLL Cytidine deaminase OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=cdd PE=3 SV=1 Back     alignment and function description
>sp|A8GC32|CDD_SERP5 Cytidine deaminase OS=Serratia proteamaculans (strain 568) GN=cdd PE=3 SV=1 Back     alignment and function description
>sp|B5XP65|CDD_KLEP3 Cytidine deaminase OS=Klebsiella pneumoniae (strain 342) GN=cdd PE=3 SV=1 Back     alignment and function description
>sp|Q7MK48|CDD_VIBVY Cytidine deaminase OS=Vibrio vulnificus (strain YJ016) GN=cdd PE=3 SV=2 Back     alignment and function description
>sp|Q8DA31|CDD_VIBVU Cytidine deaminase OS=Vibrio vulnificus (strain CMCP6) GN=cdd PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
255546161311 cytidine deaminase 1, 2, 7, putative [Ri 0.957 0.932 0.684 1e-116
224088025315 predicted protein [Populus trichocarpa] 0.960 0.923 0.677 1e-113
225444944301 PREDICTED: cytidine deaminase-like [Viti 0.947 0.953 0.687 1e-111
224103399292 predicted protein [Populus trichocarpa] 0.927 0.962 0.686 1e-108
224122466292 predicted protein [Populus trichocarpa] 0.927 0.962 0.683 1e-108
15224801301 cytidine deaminase 1 [Arabidopsis thalia 0.943 0.950 0.624 1e-101
21553586301 putative cytidine deaminase [Arabidopsis 0.943 0.950 0.617 1e-101
449435848304 PREDICTED: cytidine deaminase-like [Cucu 0.943 0.940 0.659 1e-100
4836452304 cytidine deaminase [Arabidopsis thaliana 0.947 0.944 0.610 7e-99
357520685287 Cytidine deaminase [Medicago truncatula] 0.943 0.996 0.625 7e-98
>gi|255546161|ref|XP_002514140.1| cytidine deaminase 1, 2, 7, putative [Ricinus communis] gi|223546596|gb|EEF48094.1| cytidine deaminase 1, 2, 7, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/320 (68%), Positives = 248/320 (77%), Gaps = 30/320 (9%)

Query: 1   MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
           ME PRFVIEA+EAESMAQK+GLT+++LLPTLVKSAQ+LARPPIS ++VGAVGLGSSGRIF
Sbjct: 1   MEPPRFVIEASEAESMAQKAGLTLVELLPTLVKSAQSLARPPISDYYVGAVGLGSSGRIF 60

Query: 61  LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
            G N+EFPGLPLHQS+HAEQFLITNL LNAE  L+++AVSAAPCGHCRQF QE+R+  DI
Sbjct: 61  FGANLEFPGLPLHQSVHAEQFLITNLFLNAESNLKYVAVSAAPCGHCRQFFQEIRDAPDI 120

Query: 121 NICIT----------SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNL 170
            I IT            N + +++  LS+LLP RFGP DLLDK VPL+LE H N MS  L
Sbjct: 121 QILITGDSNNTNNNDQSNGDIKRFDTLSNLLPQRFGPYDLLDKSVPLVLEKHNNHMS--L 178

Query: 171 CNGQIPETENPK-----------ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
            N  I  + N K           + LK  ALEAAN SHAPYSKCPSGVA+MDCEG +YKG
Sbjct: 179 QNDDI--SNNSKKVPNGISISVFDDLKLEALEAANSSHAPYSKCPSGVALMDCEGKVYKG 236

Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
           SYMESAAYNPSLGPVQAA+VAYL      GGGGGYE+IVAA LVEKE+AVVRQE  ARLL
Sbjct: 237 SYMESAAYNPSLGPVQAAIVAYLV-----GGGGGYEKIVAAVLVEKEEAVVRQEFTARLL 291

Query: 280 LQVISPKCEFNVFHCGCKKS 299
           LQVISP+CEF VFHC   KS
Sbjct: 292 LQVISPRCEFKVFHCSSSKS 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224088025|ref|XP_002308296.1| predicted protein [Populus trichocarpa] gi|222854272|gb|EEE91819.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225444944|ref|XP_002282373.1| PREDICTED: cytidine deaminase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103399|ref|XP_002334057.1| predicted protein [Populus trichocarpa] gi|222839792|gb|EEE78115.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122466|ref|XP_002330488.1| predicted protein [Populus trichocarpa] gi|222872422|gb|EEF09553.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15224801|ref|NP_179547.1| cytidine deaminase 1 [Arabidopsis thaliana] gi|6090835|gb|AAF03358.1|AF134487_1 cytidine deaminase 1 [Arabidopsis thaliana] gi|3046700|emb|CAA06460.1| cytidine deaminase [Arabidopsis thaliana] gi|3093276|emb|CAA06671.1| cytidine deaminase [Arabidopsis thaliana] gi|4191787|gb|AAD10156.1| putative cytidine deaminase [Arabidopsis thaliana] gi|22135974|gb|AAM91569.1| putative cytidine deaminase [Arabidopsis thaliana] gi|30984516|gb|AAP42721.1| At2g19570 [Arabidopsis thaliana] gi|330251802|gb|AEC06896.1| cytidine deaminase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21553586|gb|AAM62679.1| putative cytidine deaminase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449435848|ref|XP_004135706.1| PREDICTED: cytidine deaminase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|4836452|gb|AAD30449.1|AF121878_1 cytidine deaminase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357520685|ref|XP_003630631.1| Cytidine deaminase [Medicago truncatula] gi|355524653|gb|AET05107.1| Cytidine deaminase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
TAIR|locus:2050429301 CDA1 "cytidine deaminase 1" [A 0.943 0.950 0.611 9.3e-91
TAIR|locus:2134358293 AT4G29610 [Arabidopsis thalian 0.904 0.935 0.496 1.1e-64
TAIR|locus:2134338307 AT4G29600 [Arabidopsis thalian 0.933 0.921 0.490 4.7e-64
TAIR|locus:2134373337 AT4G29620 [Arabidopsis thalian 0.924 0.830 0.459 3.6e-57
TAIR|locus:2134403346 AT4G29640 [Arabidopsis thalian 0.917 0.803 0.453 3.4e-54
TAIR|locus:2134413293 AT4G29570 [Arabidopsis thalian 0.930 0.962 0.427 2e-47
TAIR|locus:2134418251 AT4G29650 [Arabidopsis thalian 0.514 0.621 0.469 9.7e-46
TAIR|locus:2134388223 AT4G29630 [Arabidopsis thalian 0.689 0.937 0.493 9.1e-45
UNIPROTKB|Q9KSM5295 cdd "Cytidine deaminase" [Vibr 0.448 0.461 0.375 4e-37
TIGR_CMR|VC_1231295 VC_1231 "cytidine deaminase" [ 0.448 0.461 0.375 4e-37
TAIR|locus:2050429 CDA1 "cytidine deaminase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 187/306 (61%), Positives = 225/306 (73%)

Query:     1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
             M++P FVI++ EAES A++ G++V+QLLP+LVK AQ+ AR PISKF+V  VGLGSSGRIF
Sbjct:     1 MDKPSFVIQSKEAESAAKQLGVSVIQLLPSLVKPAQSYARTPISKFNVAVVGLGSSGRIF 60

Query:    61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
             LG NVEFP LPLH SIHAEQFL+TNL LN E  L   AVSAAPCGHCRQFLQE+R+  +I
Sbjct:    61 LGVNVEFPNLPLHHSIHAEQFLVTNLTLNGERHLNFFAVSAAPCGHCRQFLQEIRDAPEI 120

Query:   121 NICITSINSNERK--------YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFN--- 169
              I IT  N++           +  L   LP RFGP+DLL KD PLLLE+H N +  +   
Sbjct:   121 KILITDPNNSADSDSAADSDGFLRLGSFLPHRFGPDDLLGKDHPLLLESHDNHLKISDLD 180

Query:   170 -LCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
              +CNG    T++  + LK  AL AAN+S+APYS CPSGV+++DC+G +Y+G YMESAAYN
Sbjct:   181 SICNGN---TDSSAD-LKQTALAAANRSYAPYSLCPSGVSLVDCDGKVYRGWYMESAAYN 236

Query:   229 PSLGPVQAALVAYLAAXXXXXXXXXYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCE 288
             PS+GPVQAALV Y+A          YERIV A LVEKEDAVVRQEH ARLLL+ ISPKCE
Sbjct:   237 PSMGPVQAALVDYVA----NGGGGGYERIVGAVLVEKEDAVVRQEHTARLLLETISPKCE 292

Query:   289 FNVFHC 294
             F VFHC
Sbjct:   293 FKVFHC 298
GO:0003824 "catalytic activity" evidence=IEA
GO:0004126 "cytidine deaminase activity" evidence=IEA;IDA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009972 "cytidine deamination" evidence=IEA;IDA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0005829 "cytosol" evidence=ISS;IDA
TAIR|locus:2134358 AT4G29610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134338 AT4G29600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134373 AT4G29620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134403 AT4G29640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134413 AT4G29570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134418 AT4G29650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134388 AT4G29630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSM5 cdd "Cytidine deaminase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1231 VC_1231 "cytidine deaminase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B5FMZ9CDD_SALDC3, ., 5, ., 4, ., 50.37540.83160.8571yesno
A6TBN1CDD_KLEP73, ., 5, ., 4, ., 50.37540.85140.8775yesno
Q87Q52CDD_VIBPA3, ., 5, ., 4, ., 50.33450.84810.8711yesno
B4TNP0CDD_SALSV3, ., 5, ., 4, ., 50.37180.83160.8571yesno
C0Q0V4CDD_SALPC3, ., 5, ., 4, ., 50.37180.83160.8571yesno
Q9CP11CDD_PASMU3, ., 5, ., 4, ., 50.34840.84480.8707yesno
Q8DA31CDD_VIBVU3, ., 5, ., 4, ., 50.350.84480.8677yesno
A9N6L3CDD_SALPB3, ., 5, ., 4, ., 50.37180.83160.8571yesno
Q7N6K3CDD_PHOLL3, ., 5, ., 4, ., 50.38320.86460.8911yesno
Q8ZNM0CDD_SALTY3, ., 5, ., 4, ., 50.37180.83160.8571yesno
B4TAK5CDD_SALHS3, ., 5, ., 4, ., 50.37180.83160.8571yesno
B4SY15CDD_SALNS3, ., 5, ., 4, ., 50.37180.83160.8571yesno
Q6D3B4CDD_ERWCT3, ., 5, ., 4, ., 50.38510.84150.8614yesno
B5RC22CDD_SALG23, ., 5, ., 4, ., 50.37180.83160.8571yesno
A5F1V7CDD_VIBC33, ., 5, ., 4, ., 50.35460.84480.8677yesno
Q6LRI0CDD_PHOPR3, ., 5, ., 4, ., 50.35400.81180.8338yesno
Q2NUD2CDD_SODGM3, ., 5, ., 4, ., 50.37680.87450.8576yesno
A8GC32CDD_SERP53, ., 5, ., 4, ., 50.36840.85470.8809yesno
C3LLS7CDD_VIBCM3, ., 5, ., 4, ., 50.35810.84480.8677yesno
B5EYN3CDD_SALA43, ., 5, ., 4, ., 50.37180.83160.8571yesno
B5R153CDD_SALEP3, ., 5, ., 4, ., 50.37180.83160.8571yesno
B5XP65CDD_KLEP33, ., 5, ., 4, ., 50.37540.85140.8775yesno
Q083S7CDD_SHEFN3, ., 5, ., 4, ., 50.37050.83820.8523yesno
Q9KSM5CDD_VIBCH3, ., 5, ., 4, ., 50.35810.84480.8677yesno
C5BCM4CDD_EDWI93, ., 5, ., 4, ., 50.40070.83820.8610yesno
Q7MK48CDD_VIBVY3, ., 5, ., 4, ., 50.350.84480.8677yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.40.766
3rd Layer3.5.4.50.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
PLN02402303 PLN02402, PLN02402, cytidine deaminase 1e-176
TIGR01355283 TIGR01355, cyt_deam_dimer, cytidine deaminase, hom 1e-128
PRK09027295 PRK09027, PRK09027, cytidine deaminase; Provisiona 2e-83
PLN02182339 PLN02182, PLN02182, cytidine deaminase 2e-80
pfam08211124 pfam08211, dCMP_cyt_deam_2, Cytidine and deoxycyti 4e-53
COG0295134 COG0295, Cdd, Cytidine deaminase [Nucleotide trans 3e-25
cd01283112 cd01283, cytidine_deaminase, Cytidine deaminase zi 4e-21
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 3e-15
TIGR01354127 TIGR01354, cyt_deam_tetra, cytidine deaminase, hom 7e-15
PRK05578131 PRK05578, PRK05578, cytidine deaminase; Validated 2e-12
TIGR01354127 TIGR01354, cyt_deam_tetra, cytidine deaminase, hom 7e-11
COG0295134 COG0295, Cdd, Cytidine deaminase [Nucleotide trans 7e-07
cd01283112 cd01283, cytidine_deaminase, Cytidine deaminase zi 2e-06
PRK05578131 PRK05578, PRK05578, cytidine deaminase; Validated 2e-06
PRK12411132 PRK12411, PRK12411, cytidine deaminase; Provisiona 2e-05
PRK12411132 PRK12411, PRK12411, cytidine deaminase; Provisiona 0.003
cd0078696 cd00786, cytidine_deaminase-like, Cytidine and deo 0.003
>gnl|CDD|178024 PLN02402, PLN02402, cytidine deaminase Back     alignment and domain information 
 Score =  489 bits (1260), Expect = e-176
 Identities = 218/309 (70%), Positives = 248/309 (80%), Gaps = 22/309 (7%)

Query: 1   MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
           M+ P FVIEA+EAESMA++SGLTVLQLLP+LVKSAQ+LARPPISK+HVGAVGLGSSGRIF
Sbjct: 1   MDGPIFVIEASEAESMAKQSGLTVLQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIF 60

Query: 61  LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
           LG N+EFPGLPLH S+HAEQFLITNL LNAEP L+++AVSAAPCGHCRQF QE+R+  DI
Sbjct: 61  LGVNLEFPGLPLHHSVHAEQFLITNLTLNAEPHLKYVAVSAAPCGHCRQFFQEIRDAPDI 120

Query: 121 NICITS----------INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF-- 168
            I IT             ++ +++ PLS LLP RFGP+DLLDKDVPLLLE H N +SF  
Sbjct: 121 KILITGDSNSNDSYKNSLADSQQFEPLSCLLPHRFGPDDLLDKDVPLLLEPHHNHLSFVG 180

Query: 169 --NLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAA 226
              L NG    +++    LK  ALEAANKSHAPYS CPSGVA+MDCEG +Y+GSYMESAA
Sbjct: 181 DDKLPNGISASSDD----LKNEALEAANKSHAPYSNCPSGVALMDCEGKVYRGSYMESAA 236

Query: 227 YNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
           YNPS+GPVQAALVAY+A    GG GGGYERIVAA LVEKE AVVRQE  ARLLL+ ISPK
Sbjct: 237 YNPSMGPVQAALVAYVA----GGRGGGYERIVAAVLVEKEGAVVRQEQTARLLLKEISPK 292

Query: 287 CEFNVFHCG 295
           CEF VFHC 
Sbjct: 293 CEFKVFHCS 301

Length = 303
>gnl|CDD|233372 TIGR01355, cyt_deam_dimer, cytidine deaminase, homodimeric Back     alignment and domain information
>gnl|CDD|181614 PRK09027, PRK09027, cytidine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|177837 PLN02182, PLN02182, cytidine deaminase Back     alignment and domain information
>gnl|CDD|116797 pfam08211, dCMP_cyt_deam_2, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|223372 COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|238610 cd01283, cytidine_deaminase, Cytidine deaminase zinc-binding domain Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|233371 TIGR01354, cyt_deam_tetra, cytidine deaminase, homotetrameric Back     alignment and domain information
>gnl|CDD|180142 PRK05578, PRK05578, cytidine deaminase; Validated Back     alignment and domain information
>gnl|CDD|233371 TIGR01354, cyt_deam_tetra, cytidine deaminase, homotetrameric Back     alignment and domain information
>gnl|CDD|223372 COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|238610 cd01283, cytidine_deaminase, Cytidine deaminase zinc-binding domain Back     alignment and domain information
>gnl|CDD|180142 PRK05578, PRK05578, cytidine deaminase; Validated Back     alignment and domain information
>gnl|CDD|183511 PRK12411, PRK12411, cytidine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|183511 PRK12411, PRK12411, cytidine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 303
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 100.0
PLN02402303 cytidine deaminase 100.0
PRK09027295 cytidine deaminase; Provisional 100.0
PLN02182339 cytidine deaminase 100.0
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 100.0
PRK05578131 cytidine deaminase; Validated 100.0
PRK12411132 cytidine deaminase; Provisional 100.0
KOG0833173 consensus Cytidine deaminase [Nucleotide transport 100.0
PRK08298136 cytidine deaminase; Validated 100.0
PRK06848139 hypothetical protein; Validated 100.0
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 100.0
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 100.0
PRK05578131 cytidine deaminase; Validated 100.0
PRK12411132 cytidine deaminase; Provisional 100.0
PRK08298136 cytidine deaminase; Validated 100.0
PRK06848139 hypothetical protein; Validated 99.98
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 99.97
PF08211124 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam 99.96
TIGR01355 283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 99.96
KOG0833173 consensus Cytidine deaminase [Nucleotide transport 99.95
PLN02182 339 cytidine deaminase 99.95
PLN02402 303 cytidine deaminase 99.95
PRK09027295 cytidine deaminase; Provisional 99.94
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.87
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.87
PF08211124 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam 99.63
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.51
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.43
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.41
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.12
PF14421193 LmjF365940-deam: A distinct subfamily of CDD/CDA-l 98.67
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 98.47
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 98.32
cd01285109 nucleoside_deaminase Nucleoside deaminases include 98.3
cd01285109 nucleoside_deaminase Nucleoside deaminases include 98.26
PF14421193 LmjF365940-deam: A distinct subfamily of CDD/CDA-l 98.21
PHA02588168 cd deoxycytidylate deaminase; Provisional 98.03
TIGR02571151 ComEB ComE operon protein 2. This protein is found 97.85
PHA02588168 cd deoxycytidylate deaminase; Provisional 97.62
TIGR02571151 ComEB ComE operon protein 2. This protein is found 97.55
PRK10860172 tRNA-specific adenosine deaminase; Provisional 97.18
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 97.17
PRK10860172 tRNA-specific adenosine deaminase; Provisional 97.05
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 97.0
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 96.82
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 96.66
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 96.59
PF14431125 YwqJ-deaminase: YwqJ-like deaminase 96.31
PF14431125 YwqJ-deaminase: YwqJ-like deaminase 96.24
PLN02807380 diaminohydroxyphosphoribosylaminopyrimidine deamin 96.05
KOG1018169 consensus Cytosine deaminase FCY1 and related enzy 95.77
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 95.44
TIGR00326344 eubact_ribD riboflavin biosynthesis protein RibD. 95.43
PF14437146 MafB19-deam: MafB19-like deaminase 95.26
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 95.04
PRK10786367 ribD bifunctional diaminohydroxyphosphoribosylamin 94.8
KOG3127230 consensus Deoxycytidylate deaminase [Nucleotide tr 94.15
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 93.61
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 93.56
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 92.65
KOG1018169 consensus Cytosine deaminase FCY1 and related enzy 92.44
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 89.08
KOG3127230 consensus Deoxycytidylate deaminase [Nucleotide tr 88.88
PF14437146 MafB19-deam: MafB19-like deaminase 87.96
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information 
Probab=100.00  E-value=6.8e-78  Score=561.85  Aligned_cols=282  Identities=58%  Similarity=0.935  Sum_probs=251.2

Q ss_pred             CcccccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHH
Q 022046            4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI   83 (303)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai   83 (303)
                      |+|+|+++++++|++++|++++++|+++|++++++||+|||+|+|||+++++||++|+|||||+++.++++|+||||+||
T Consensus         1 ~~~~~~a~~~~~l~~~~~~~~~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy~GvNvE~~nas~~~tiCAEr~Ai   80 (283)
T TIGR01355         1 PKFVFTAEQAQSLGHNFGVTDPKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFYLGVNVEFPGLPLHHSIHAEQFLI   80 (283)
T ss_pred             CCeeeCHHHHHHHHHHhCCChHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEEEEEEeccCCCCCCccccHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999944444456999999999


Q ss_pred             HHHHHcCCCcEEEEEEEeCCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCCCCCCccccccC
Q 022046           84 TNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQ  163 (303)
Q Consensus        84 ~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~~~~p~l~~~~~  163 (303)
                      ++|+++|+++|++|+|+.+|||+|||+|+||.+.++++|++.+.++.  +.++|+||||++|+|+||+.+..|+|++...
T Consensus        81 ~~Av~~Ge~~i~~Iav~~~PCG~CRQ~l~Ef~~~~~~~i~l~~~~~~--~~~~l~eLLP~~F~~~dL~~~~~~ll~~~~~  158 (283)
T TIGR01355        81 SHLALNNERGLNDLAVSYAPCGHCRQFLNEIRNASSIKILLPDPHNN--RDMSLHSYLPDRFGPDDLLIKAAPLLLEERD  158 (283)
T ss_pred             HHHHHcCCCceEEEEEEeCCcchhHHHHHHhcCCCCcEEEEEcCCCc--EEeeHHHhCcCcCChhhcCcccccccccccc
Confidence            99999999999999999999999999999997546899999888775  4799999999999999998887788887655


Q ss_pred             CCceeeeccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHH
Q 022046          164 NGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA  243 (303)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~  243 (303)
                      +.+.+. ...+  ..+++|++|+++|++++++||+|||+|+||++++++||++|+|+|+||++|++|+||||+||++|++
T Consensus       159 ~~~~~~-~~~~--~~~~~~~~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~~G~nvENAay~~slcaer~Ai~~~v~  235 (283)
T TIGR01355       159 NCLALI-DIRD--GIDSEISHLKQQALKAANRSYAPYSKSPSGVALLDKEGKVYRGWYIESAAFNPSLGPVQAALVDFMA  235 (283)
T ss_pred             cceeec-cccc--cccchHHHHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEEEEEEeecCCCCCcccHHHHHHHHHHH
Confidence            444321 1011  2346778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHCCCCeEEEEeC
Q 022046          244 AGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC  294 (303)
Q Consensus       244 ~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~~~~~v~v~~~  294 (303)
                      ++    |+++..+|+++++++..+..++|||+|||+|++|+|++++.++..
T Consensus       236 ~g----~g~~~~~i~~aVl~e~~~~~vs~~~~~r~~l~~~~p~~~l~~~~~  282 (283)
T TIGR01355       236 NG----GGKGFEDIVRAVLVEKADAKVSHEATARTLLETIAPSCELKVFHC  282 (283)
T ss_pred             hC----CCCChhheeEEEEEecCCCccChHHHHHHHHHHhCCCCceEEEEe
Confidence            82    234567899999999988889999999999999999988887754

This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
>PLN02402 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF14431 YwqJ-deaminase: YwqJ-like deaminase Back     alignment and domain information
>PF14431 YwqJ-deaminase: YwqJ-like deaminase Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism] Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
1af2_A294 Crystal Structure Of Cytidine Deaminase Complexed W 2e-37
4eg2_A298 2.2 Angstrom Crystal Structure Of Cytidine Deaminas 4e-36
1ux1_A136 Bacillus Subtilis Cytidine Deaminase With A Cys53hi 1e-11
1ux0_A136 Bacillus Subtilis Cytidine Deaminase With An Arg56 9e-11
1jtk_A136 Crystal Structure Of Cytidine Deaminase From Bacill 3e-10
1uwz_A136 Bacillus Subtilis Cytidine Deaminase With An Arg56 5e-10
1zab_A146 Crystal Structure Of Mouse Cytidine Deaminase Compl 9e-09
1mq0_A140 Crystal Structure Of Human Cytidine Deaminase Lengt 1e-07
1r5t_A142 The Crystal Structure Of Cytidine Deaminase Cdd1, A 3e-05
2d30_A141 Crystal Structure Of Cytidine Deaminase Cdd-2 (Ba45 6e-05
3mpz_A150 Crystal Structure Of Cytidine Deaminase From Mycoba 7e-05
3ijf_X133 Crystal Structure Of Cytidine Deaminase From Mycoba 7e-05
>pdb|1AF2|A Chain A, Crystal Structure Of Cytidine Deaminase Complexed With Uridine Length = 294 Back     alignment and structure 
Iteration: 1

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40  RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
           R P+S F+VGA+  G SG  + G N+EF G  + Q++HAEQ  I++  L+ E  L  + V
Sbjct: 65  RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
           +  PCGHCRQF+ EL +  D+ I +       R+ H L   LPD FGP DL  K   LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
           +   +G +               + L  AA+ AAN+SH PYSK PSGVA+   +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAXXXXXXXXXYERIVAAALVEKEDAVVRQEHAARLL 279
           SY E+AA+NP+L P+Q AL+              Y  I  A L EK DA + Q  A    
Sbjct: 226 SYAENAAFNPTLPPLQGALI------LLNLKGYDYPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
           L+ +
Sbjct: 280 LKAL 283
>pdb|4EG2|A Chain A, 2.2 Angstrom Crystal Structure Of Cytidine Deaminase From Vibrio Cholerae In Complex With Zinc And Uridine Length = 298 Back     alignment and structure
>pdb|1UX1|A Chain A, Bacillus Subtilis Cytidine Deaminase With A Cys53his And An Arg56gln Substitution Length = 136 Back     alignment and structure
>pdb|1UX0|A Chain A, Bacillus Subtilis Cytidine Deaminase With An Arg56 - Gln Substitution Length = 136 Back     alignment and structure
>pdb|1JTK|A Chain A, Crystal Structure Of Cytidine Deaminase From Bacillus Subtilis In Complex With The Inhibitor Tetrahydrodeoxyuridine Length = 136 Back     alignment and structure
>pdb|1UWZ|A Chain A, Bacillus Subtilis Cytidine Deaminase With An Arg56 - Ala Substitution Length = 136 Back     alignment and structure
>pdb|1ZAB|A Chain A, Crystal Structure Of Mouse Cytidine Deaminase Complexed With 3-Deazauridine Length = 146 Back     alignment and structure
>pdb|1MQ0|A Chain A, Crystal Structure Of Human Cytidine Deaminase Length = 140 Back     alignment and structure
>pdb|1R5T|A Chain A, The Crystal Structure Of Cytidine Deaminase Cdd1, An Orphan C To U Editase From Yeast Length = 142 Back     alignment and structure
>pdb|2D30|A Chain A, Crystal Structure Of Cytidine Deaminase Cdd-2 (Ba4525) From Bacillus Anthracis At 2.40a Resolution Length = 141 Back     alignment and structure
>pdb|3MPZ|A Chain A, Crystal Structure Of Cytidine Deaminase From Mycobacterium S Length = 150 Back     alignment and structure
>pdb|3IJF|X Chain X, Crystal Structure Of Cytidine Deaminase From Mycobacterium Tuberculosis Length = 133 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 5e-80
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 4e-78
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 3e-35
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 8e-10
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 9e-35
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 4e-11
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 1e-34
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 7e-10
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 6e-33
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 2e-11
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 9e-32
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 1e-10
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 3e-31
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 2e-10
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 9e-29
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 1e-27
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 8e-11
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 8e-26
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 8e-05
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 9e-21
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 1e-05
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Length = 298 Back     alignment and structure
 Score =  243 bits (622), Expect = 5e-80
 Identities = 97/288 (33%), Positives = 141/288 (48%), Gaps = 24/288 (8%)

Query: 5   RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
                A + + +   SGL    L   L+  A   +  PIS+F+VGA+  G SGR++LG N
Sbjct: 33  DATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGAN 92

Query: 65  VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
           +EF G  L Q++HAEQ  I++  +  E  +  + ++ +PCGHCRQF+ EL   S + I +
Sbjct: 93  MEFTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQL 152

Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKER 184
                 +R    L   LP+ FGP DL                   +      +T +  E 
Sbjct: 153 P-----KRAAKTLQEYLPESFGPADLGIDS-------------GLMSPVNHGKTSDDDEE 194

Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
           L   AL A N SH+PY++  SGVA+    G IY G+Y E+AA+NPSL P+Q AL   +  
Sbjct: 195 LIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMM 254

Query: 245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
                 G  +E I AAALVE     +      +  L+VI+P    +  
Sbjct: 255 ------GESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYL 296
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Length = 294 Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Length = 136 Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Length = 136 Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Length = 142 Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Length = 142 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Length = 141 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Length = 141 Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} Length = 138 Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} Length = 138 Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X Length = 150 Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X Length = 150 Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Length = 146 Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Length = 146 Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Length = 158 Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Length = 138 Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Length = 138 Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Length = 130 Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Length = 130 Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Length = 142 Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Length = 142 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 100.0
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 100.0
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 100.0
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 100.0
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 100.0
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 100.0
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 100.0
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 100.0
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 100.0
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 100.0
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 100.0
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 100.0
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 100.0
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 100.0
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 100.0
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 100.0
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 100.0
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 99.98
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 99.97
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 99.97
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 99.97
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 99.97
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 99.95
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 99.95
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 99.4
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 99.4
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 99.35
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 99.31
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 99.28
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 99.27
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 99.27
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.23
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 99.2
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 99.19
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 99.18
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 99.14
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 99.1
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.07
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 98.93
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 98.93
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 98.87
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 98.82
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 98.81
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 98.67
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 98.13
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 97.8
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 97.52
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 97.22
2hxv_A360 Diaminohydroxyphosphoribosylaminopyrimidine deami 96.6
2g6v_A402 Riboflavin biosynthesis protein RIBD; RIBD APO str 96.54
2b3z_A373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 96.36
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 95.13
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 93.8
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 92.8
3g8q_A278 Predicted RNA-binding protein, contains thump doma 91.97
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 87.96
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 80.79
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
Probab=100.00  E-value=1.1e-78  Score=570.17  Aligned_cols=265  Identities=37%  Similarity=0.576  Sum_probs=244.7

Q ss_pred             cccccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHH
Q 022046            5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT   84 (303)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~   84 (303)
                      +++|+++|+++|++++|+++++.|..+++.++++||+|||+|+||||++++||+||+||||||+++++++++||||+||+
T Consensus        33 ~~~~~~~~~~~l~~~~~~~~~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~~G~NvEna~as~~~t~CAEr~Ai~  112 (298)
T 4eg2_A           33 DATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAEQCAIS  112 (298)
T ss_dssp             CSEECHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHH
T ss_pred             CcccCHHHHHHHHHHhCCCHHHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEEEEEcccccccccCccccHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999987788889999999999


Q ss_pred             HHHHcCCCcEEEEEEEeCCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCCCCCCccccccCC
Q 022046           85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQN  164 (303)
Q Consensus        85 ~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~~~~p~l~~~~~~  164 (303)
                      +|+++|+++|++|+|+.+|||+|||+|+||++.++++|++.+.     +.++|+||||++|+|+||..+.  .||++++|
T Consensus       113 ~Av~~G~~~i~~iav~~~PCG~CRQ~l~Ef~~~~~~~v~~~~~-----~~~~l~eLLP~~F~~~~L~~~~--~ll~~~~~  185 (298)
T 4eg2_A          113 HAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLPKR-----AAKTLQEYLPESFGPADLGIDS--GLMSPVNH  185 (298)
T ss_dssp             HHHHTTCSCEEEEEESSCCCHHHHHHHTTBTTTTTCEEECSSS-----CCEEHHHHSTTCCCGGGGTCCC--CBTSCCCC
T ss_pred             HHHhCCCCceEEEEeecCCCHHHHHHHHHhcCCCceEEEeCCC-----ceeEHHHhCCCCCChhhcCCch--hhccccCC
Confidence            9999999999999999999999999999997545788888643     2589999999999999998765  78888999


Q ss_pred             CceeeeccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHh
Q 022046          165 GMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA  244 (303)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~  244 (303)
                      ++.+.   +        |++|+++|+++++++|+|||+|+|||||+++||+||+|+||||++|++++||||+||++|+++
T Consensus       186 ~~~~~---~--------~~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iytG~nvEnAay~~slcAEr~Al~~av~~  254 (298)
T 4eg2_A          186 GKTSD---D--------DEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMM  254 (298)
T ss_dssp             CCCCC---C--------CCHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHT
T ss_pred             CCccC---C--------HHHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEEEEEeeeccccCCCCCHHHHHHHHHHHC
Confidence            98751   1        258999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHCCCCeEEEEe
Q 022046          245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH  293 (303)
Q Consensus       245 ~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~~~~~v~v~~  293 (303)
                           |. +..+|++++++++.+.+++|||+|||+|.||+||+++..+.
T Consensus       255 -----G~-~~~~i~aiv~v~~~~~~~sPCG~CRqvL~e~~pdv~l~y~~  297 (298)
T 4eg2_A          255 -----GE-SFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLS  297 (298)
T ss_dssp             -----TC-CGGGEEEEEEEECTTCSSCCHHHHHHHHHHHCTTCCEEEEE
T ss_pred             -----CC-CccCeEEEEEEeCCCCCcCCcHHHHHHHHHhCCCCceEEEe
Confidence                 64 34589999999998889999999999999999999987653
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 303
d1alna2144 c.97.1.1 (A:151-294) Two-domain cytidine deaminase 4e-36
d1alna2144 c.97.1.1 (A:151-294) Two-domain cytidine deaminase 2e-11
d1alna1150 c.97.1.1 (A:1-150) Two-domain cytidine deaminase { 7e-35
d1alna1150 c.97.1.1 (A:1-150) Two-domain cytidine deaminase { 4e-12
d1uwza_130 c.97.1.1 (A:) mono-domain cytidine deaminase {Baci 3e-24
d1uwza_130 c.97.1.1 (A:) mono-domain cytidine deaminase {Baci 2e-11
d1r5ta_141 c.97.1.1 (A:) mono-domain cytidine deaminase {Bake 1e-22
d1r5ta_141 c.97.1.1 (A:) mono-domain cytidine deaminase {Bake 6e-14
d2fr5a1136 c.97.1.1 (A:11-146) mono-domain cytidine deaminase 5e-22
d2fr5a1136 c.97.1.1 (A:11-146) mono-domain cytidine deaminase 3e-13
d2d30a1124 c.97.1.1 (A:1-124) mono-domain cytidine deaminase 3e-18
d2d30a1124 c.97.1.1 (A:1-124) mono-domain cytidine deaminase 3e-14
d2z3ga1123 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Asperg 6e-18
d2z3ga1123 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Asperg 0.001
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Length = 144 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: Two-domain cytidine deaminase
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (313), Expect = 4e-36
 Identities = 59/153 (38%), Positives = 78/153 (50%), Gaps = 20/153 (13%)

Query: 132 RKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALE 191
           R+ H L   LPD FGP DL  K   LL++   +G +               + L  AA+ 
Sbjct: 2   REAHALRDYLPDAFGPKDLEIK--TLLMDEQDHGYALT------------GDALSQAAIA 47

Query: 192 AANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGG 251
           AAN+SH PYSK PSGVA+   +G I+ GSY E+AA+NP+L P+Q AL+           G
Sbjct: 48  AANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLK------G 101

Query: 252 GGYERIVAAALVEKEDAVVRQEHAARLLLQVIS 284
             Y  I  A L EK DA + Q  A    L+ + 
Sbjct: 102 YDYPDIQRAVLAEKADAPLIQWDATSATLKALG 134
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Length = 144 Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Length = 130 Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Length = 130 Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 141 Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 141 Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Length = 136 Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Length = 136 Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Length = 124 Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Length = 124 Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Length = 123 Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Length = 123 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 100.0
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 100.0
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 100.0
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 100.0
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 100.0
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 100.0
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 100.0
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 100.0
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 100.0
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 100.0
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 100.0
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 99.97
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 99.95
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 99.94
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 97.62
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 97.57
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 97.44
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 97.4
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 97.33
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 97.2
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 97.18
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 97.15
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 97.06
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 97.06
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 96.99
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 96.93
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 96.92
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 96.92
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 96.84
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 96.69
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 96.35
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 96.28
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 94.04
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 91.97
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-43  Score=294.71  Aligned_cols=125  Identities=34%  Similarity=0.536  Sum_probs=115.5

Q ss_pred             hhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe--
Q 022046           24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA--  101 (303)
Q Consensus        24 ~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~--  101 (303)
                      ..++|+++|++++++||+|||+|+||||++++||+||+|+||||++|+.  ++||||+||++|+++|.++|++++++.  
T Consensus         4 ~~~~l~~~A~~a~~~AyaPYS~f~VGAa~~~~dG~i~~G~NvEnasy~~--~iCAEr~Ai~~a~~~g~~~~~~~~~~~~~   81 (136)
T d2fr5a1           4 HVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPL--GVCAERTAIQKAISEGYKDFRAIAISSDL   81 (136)
T ss_dssp             HHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGG--CBCHHHHHHHHHHHTTCCCEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHhcCcCCccCCcEEEEEEeCCCCEEEEEeeccccccc--ccchhheeeeeeeccCCccEEEEEeeccc
Confidence            4467999999999999999999999999999999999999999999875  899999999999999999999988875  


Q ss_pred             -----CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCCC
Q 022046          102 -----APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDK  153 (303)
Q Consensus       102 -----~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~~  153 (303)
                           +|||.|||+|+||+  ++++|++.+.++.. +..+|+||||++|+|+||.+.
T Consensus        82 ~~~~~~PCG~CRQ~l~E~~--~~~~i~~~~~~~~~-~~~tl~eLLP~~F~~~~L~~~  135 (136)
T d2fr5a1          82 QEEFISPCGACRQVMREFG--TDWAVYMTKPDGTF-VVRTVQELLPASFGPEDLQKI  135 (136)
T ss_dssp             SSSCCCCCHHHHHHHHHTC--SSCEEEEECTTSCE-EEEEHHHHSTTCCCGGGGTCC
T ss_pred             CCCCCCcchhhhHHHHhhC--CCceEEEECCCCCE-EEeEHHHhCcCCCChHHhCcc
Confidence                 79999999999996  68999999888875 678999999999999999764
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure