Citrus Sinensis ID: 022256

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVTDHHKQRPPIDNLGPNDIIPDPPTVTIPPRILHL
cccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccEEEEcccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
cccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHEccccccHHHHHccccccccccccccEEEccHHHHHHHHHHHHHcccEEEEEEccccccEEEEEEEccHHHHHHHcccccEEcccccHccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccccccccccccEEcccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHccHHHcccccccccccccccccccccccccHccc
mvpfaigsetagsmtypgarcgvtalrptfgtvgrtgVMSISESLdklgpfcrsaadCTIVLDaiqgkdpddlssrdfpfadpfsvditkltvgyledAEMEVVQVLAEKgikmvpfklnyTVDSVQGILNFTMDVDMLAHFdewqrsgkddvyeaqdqwpvelRRSRIITAVDYMQAQRARGKLIREVKESFIVDAFIGNVTDWEKVCLGnlvglpvivvpagfknisnpppsgsrrrttittgiyappkhDHIALALAIAYQSvtdhhkqrppidnlgpndiipdpptvtipprilhl
mvpfaigsetagsmtypgaRCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPagfknisnpppsgsrrrtTITTGIYAPPKHDHIALALAIAYQSVTDHHKQRPPIdnlgpndiipdpptvtipprilhl
MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPAGFKnisnpppsgsrrrttittgiYAPPKHDHIALALAIAYQSVTDHHKQRPPIDNLGpndiipdpptvtippriLHL
*************MTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGK*******RDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPAGFKNI************TITTGIYAPPKHDHIALALAIAYQSVT*********************************
MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVTDHHKQRPP***************VTI**RIL**
MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVTDHHKQRPPIDNLGPNDIIPDPPTVTIPPRILHL
MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVTDHHKQRPPIDNLGPNDIIPDPPTVTIPPRILHL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVTDHHKQRPPIDNLGPNDIIPDPPTVTIPPRILHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
B2V855485 Glutamyl-tRNA(Gln) amidot yes no 0.883 0.546 0.256 4e-22
A7NKM0490 Glutamyl-tRNA(Gln) amidot yes no 0.856 0.524 0.276 1e-19
Q5WVW0483 Glutamyl-tRNA(Gln) amidot yes no 0.86 0.534 0.266 4e-19
A5ICP2483 Glutamyl-tRNA(Gln) amidot yes no 0.86 0.534 0.272 5e-19
Q5X4H5483 Glutamyl-tRNA(Gln) amidot yes no 0.86 0.534 0.275 1e-18
B8G974488 Glutamyl-tRNA(Gln) amidot yes no 0.863 0.530 0.269 2e-18
Q5ZUQ7483 Glutamyl-tRNA(Gln) amidot yes no 0.86 0.534 0.260 2e-18
C4Z3J4481 Glutamyl-tRNA(Gln) amidot yes no 0.733 0.457 0.254 3e-18
A5UXF9487 Glutamyl-tRNA(Gln) amidot yes no 0.836 0.515 0.278 6e-18
B1I3K2492 Glutamyl-tRNA(Gln) amidot yes no 0.866 0.528 0.263 1e-17
>sp|B2V855|GATA_SULSY Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1 Back     alignment and function desciption
 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 66/331 (19%)

Query: 1   MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
           M P ++GS+T GS+  P A CGV  L+PT+G V R G+++ + SLD++GPF R+  D  +
Sbjct: 166 MAPASLGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPFGRTVEDVAM 225

Query: 61  VLDAIQGKDPDDLSSRDFP---FADPFSVDITKLTVG-----YLEDAE-------MEVVQ 105
           +++ I GKDP D +SR  P   + +  + D+  L +G     Y ED         +  V+
Sbjct: 226 IMNVISGKDPKDSTSRSIPVPNYLESLNKDVKGLKIGLPKEFYTEDLNPQIKEIILNAVK 285

Query: 106 VLAEKGIKMVPFKLNYTVDSVQG--ILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQ---- 159
            L ++G+      L YT  +++   I+  +     LA FD  +   +   Y+  ++    
Sbjct: 286 QLEKEGMTAHEISLPYTKYAIETYYIIAPSEASSNLARFDGVRYGYRAKEYKNLEEMYSK 345

Query: 160 -----WPVELRRSRIITAVD---------YMQAQRARGKLIREVKESF-IVDAFIGNVTD 204
                +  E++R  +I             Y++AQ+ R  + ++   +F  VD  I   T 
Sbjct: 346 TRDEGFGAEVKRRIMIGTYALSSGYYDAYYLKAQKVRTLIYQDYMNAFEKVDVIITPTTP 405

Query: 205 WEKVCLG-------------------NLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTG 245
                +G                   N+  +P + +P GFK+  N P         +   
Sbjct: 406 DVAFKIGEKSNDPIQMYLSDIFTVSANMATVPALSIPCGFKD--NLP---------VGMQ 454

Query: 246 IYAPPKHDHIALALAIAYQSVTDHHKQRPPI 276
           I   P  +   L +A  +QS+ D+HK+ P +
Sbjct: 455 IIGKPFDEETILQVAYKFQSLNDYHKRFPEV 485
Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Sulfurihydrogenibium sp. (strain YO3AOP1) (taxid: 436114)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: -
>sp|A7NKM0|GATA_ROSCS Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q5WVW0|GATA_LEGPL Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Lens) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A5ICP2|GATA_LEGPC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Corby) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q5X4H5|GATA_LEGPA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Paris) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B8G974|GATA_CHLAD Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q5ZUQ7|GATA_LEGPH Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|C4Z3J4|GATA_EUBE2 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A5UXF9|GATA_ROSS1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Roseiflexus sp. (strain RS-1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B1I3K2|GATA_DESAP Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulforudis audaxviator (strain MP104C) GN=gatA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
255539997 581 Glutamyl-tRNA(Gln) amidotransferase subu 1.0 0.516 0.86 1e-147
42567719 659 Amidase family protein [Arabidopsis thal 1.0 0.455 0.793 1e-146
312282771 663 unnamed protein product [Thellungiella h 1.0 0.452 0.803 1e-146
7576174 657 putative amidase [Arabidopsis thaliana] 1.0 0.456 0.793 1e-146
2462927 457 putative amidase [Arabidopsis thaliana] 1.0 0.656 0.79 1e-145
297810845 622 amidase family protein [Arabidopsis lyra 1.0 0.482 0.793 1e-145
296090171 625 unnamed protein product [Vitis vinifera] 0.956 0.459 0.829 1e-143
359489090 613 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.956 0.468 0.829 1e-143
145334317 652 Amidase family protein [Arabidopsis thal 0.98 0.450 0.789 1e-142
110736857 652 putative amidase [Arabidopsis thaliana] 0.98 0.450 0.785 1e-141
>gi|255539997|ref|XP_002511063.1| Glutamyl-tRNA(Gln) amidotransferase subunit A, putative [Ricinus communis] gi|223550178|gb|EEF51665.1| Glutamyl-tRNA(Gln) amidotransferase subunit A, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/300 (86%), Positives = 277/300 (92%)

Query: 1   MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
           MVPFAIGSETAGS+TYP +RCGVTALRPT GTVGRTGVMSISESLDKLGPFCRSAADC+I
Sbjct: 282 MVPFAIGSETAGSITYPASRCGVTALRPTLGTVGRTGVMSISESLDKLGPFCRSAADCSI 341

Query: 61  VLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLN 120
           VLDA++GKDPDDLSSR+ P  DPFSVDIT+LTVGYL+DAEMEVV VL EKG+ MVPFKLN
Sbjct: 342 VLDALRGKDPDDLSSREIPLNDPFSVDITRLTVGYLDDAEMEVVHVLKEKGVNMVPFKLN 401

Query: 121 YTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQR 180
           YTVDSVQGILNFTMDVDMLAHFDEWQR+G DD YEAQDQWP+ELRR+R+I+AVDY+QAQR
Sbjct: 402 YTVDSVQGILNFTMDVDMLAHFDEWQRNGLDDAYEAQDQWPIELRRARVISAVDYVQAQR 461

Query: 181 ARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRT 240
           ARGKLI+EV++ F VDAFIGN TDWEKVCLGNLVGLPVIVVP GFKNISNPP  GSRRRT
Sbjct: 462 ARGKLIQEVRKGFTVDAFIGNATDWEKVCLGNLVGLPVIVVPTGFKNISNPPSEGSRRRT 521

Query: 241 TITTGIYAPPKHDHIALALAIAYQSVTDHHKQRPPIDNLGPNDIIPDPPTVTIPPRILHL 300
           TITTGIYA P  DHIALALA+AYQSVTDHHKQRPPIDNLGPND IPDPP V IPPR LHL
Sbjct: 522 TITTGIYARPSQDHIALALAMAYQSVTDHHKQRPPIDNLGPNDKIPDPPIVVIPPRRLHL 581

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|42567719|ref|NP_196353.2| Amidase family protein [Arabidopsis thaliana] gi|332003759|gb|AED91142.1| Amidase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312282771|dbj|BAJ34251.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|7576174|emb|CAB87925.1| putative amidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2462927|emb|CAA71371.1| putative amidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297810845|ref|XP_002873306.1| amidase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319143|gb|EFH49565.1| amidase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|296090171|emb|CBI39990.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489090|ref|XP_002270353.2| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|145334317|ref|NP_001078540.1| Amidase family protein [Arabidopsis thaliana] gi|332003760|gb|AED91143.1| Amidase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110736857|dbj|BAF00386.1| putative amidase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
TAIR|locus:2183374659 AT5G07360 "AT5G07360" [Arabido 0.933 0.424 0.764 5.4e-118
TIGR_CMR|CHY_1102485 CHY_1102 "glutamyl-tRNA(Gln) a 0.36 0.222 0.369 1.5e-19
TIGR_CMR|CBU_1474483 CBU_1474 "glutamyl-tRNA(Gln) a 0.313 0.194 0.371 5e-16
UNIPROTKB|P63496475 amiD "Putative amidase AmiD" [ 0.613 0.387 0.280 5.5e-16
TIGR_CMR|GSU_3381485 GSU_3381 "glutamyl-tRNA(Gln) a 0.34 0.210 0.372 5.6e-16
TIGR_CMR|DET_1335486 DET_1335 "glutamyl-tRNA(Gln) a 0.24 0.148 0.430 7.6e-14
UNIPROTKB|F1NLA0514 QRSL1 "Uncharacterized protein 0.3 0.175 0.397 2.1e-12
UNIPROTKB|Q97SE6488 gatA "Glutamyl-tRNA(Gln) amido 0.27 0.165 0.382 2.6e-12
TIGR_CMR|BA_0321485 BA_0321 "glutamyl-tRNA(Gln) am 0.246 0.152 0.445 4.3e-12
TIGR_CMR|SPO_2969496 SPO_2969 "glutamyl-tRNA(Gln) a 0.37 0.223 0.322 6.5e-12
TAIR|locus:2183374 AT5G07360 "AT5G07360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 214/280 (76%), Positives = 246/280 (87%)

Query:     1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
             MVPFAIGSETAGSMTYP ARCG+TALRPTFG+VGRTGVMSISESLDKLGPFCR+AADC +
Sbjct:   360 MVPFAIGSETAGSMTYPAARCGITALRPTFGSVGRTGVMSISESLDKLGPFCRTAADCAV 419

Query:    61 VLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLN 120
             +LDAI+GKDPDDLSSR+  F DPFSVDITKLTVGY +DA+M+VV+VL  KG+ MVPF+LN
Sbjct:   420 ILDAIKGKDPDDLSSREIAFEDPFSVDITKLTVGYTKDADMKVVEVLGSKGVNMVPFELN 479

Query:   121 YTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQR 180
             YTV+SVQGILNFTMDVDMLAHFDEWQR+G++D+YEAQDQWPVELRR+R++TAVDY+QAQR
Sbjct:   480 YTVESVQGILNFTMDVDMLAHFDEWQRTGQEDLYEAQDQWPVELRRARVVTAVDYIQAQR 539

Query:   181 ARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPAGFKXXXXXXXXXXXXXX 240
             ARGKLIREV++SF VDAFIGNVTDWEKVC+GNLVGLPV+V+P GFK              
Sbjct:   540 ARGKLIREVEKSFTVDAFIGNVTDWEKVCMGNLVGLPVLVIPTGFKNITDPPTNSCRRRT 599

Query:   241 XXXXXXYAPPKHDHIALALAIAYQSVTDHHKQRPPIDNLG 280
                   YAPP+ DHIALAL +AYQSVTD H++RPPID+LG
Sbjct:   600 TINAGIYAPPERDHIALALGMAYQSVTDAHRKRPPIDDLG 639
GO:0004040 "amidase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0006869 "lipid transport" evidence=RCA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0009062 "fatty acid catabolic process" evidence=RCA
GO:0010351 "lithium ion transport" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
TIGR_CMR|CHY_1102 CHY_1102 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1474 CBU_1474 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P63496 amiD "Putative amidase AmiD" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3381 GSU_3381 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1335 DET_1335 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLA0 QRSL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q97SE6 gatA "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Streptococcus pneumoniae TIGR4 (taxid:170187)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0321 BA_0321 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2969 SPO_2969 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
pfam01425431 pfam01425, Amidase, Amidase 8e-50
COG0154475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 4e-32
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 7e-24
TIGR00132460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 4e-23
PRK09201465 PRK09201, PRK09201, amidase; Provisional 1e-19
TIGR02715452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 1e-18
PRK08137497 PRK08137, PRK08137, amidase; Provisional 4e-17
PRK07235502 PRK07235, PRK07235, amidase; Provisional 6e-14
PRK06102452 PRK06102, PRK06102, hypothetical protein; Provisio 9e-13
PRK07488472 PRK07488, PRK07488, indole acetimide hydrolase; Va 2e-12
PRK06707536 PRK06707, PRK06707, amidase; Provisional 3e-12
PRK07486484 PRK07486, PRK07486, amidase; Provisional 6e-12
PRK06828491 PRK06828, PRK06828, amidase; Provisional 8e-12
PRK07139439 PRK07139, PRK07139, amidase; Provisional 8e-12
PRK06169466 PRK06169, PRK06169, putative amidase; Provisional 1e-10
PRK07056454 PRK07056, PRK07056, amidase; Provisional 9e-10
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 1e-09
PRK08310395 PRK08310, PRK08310, amidase; Provisional 2e-09
PRK05962424 PRK05962, PRK05962, amidase; Validated 2e-09
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 9e-09
PRK06170490 PRK06170, PRK06170, amidase; Provisional 2e-08
PLN02722422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 2e-07
PRK07487469 PRK07487, PRK07487, amidase; Provisional 6e-07
PRK12470462 PRK12470, PRK12470, amidase; Provisional 3e-05
PRK06061483 PRK06061, PRK06061, amidase; Provisional 7e-05
PRK07042464 PRK07042, PRK07042, amidase; Provisional 2e-04
PRK11910615 PRK11910, PRK11910, amidase; Provisional 4e-04
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information 
 Score =  170 bits (432), Expect = 8e-50
 Identities = 80/301 (26%), Positives = 121/301 (40%), Gaps = 55/301 (18%)

Query: 1   MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
           +VP AIG++T GS+  P A CG+  L+PT+G V R GV+  S SLD +GP  R+  D  +
Sbjct: 142 LVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPYSSSLDHVGPLARTVEDAAL 201

Query: 61  VLDAIQGKDPDDLSSRD---FPFADPFSVDITKLTVGY------------LEDAEMEVVQ 105
           +LD I G DP D +S       FA+P    +  L +G             ++ A  +   
Sbjct: 202 LLDVIAGYDPADPTSAPSPVPDFAEPLKKSLKGLRIGVPREDFYFSLDPEVQRAVRKAAA 261

Query: 106 VLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDM---LAHFDEWQRSGKDDVYEAQDQWPV 162
            L   G ++V  +      ++  +       +    L+  DE     +D++   + +  +
Sbjct: 262 ALEALGHEVVEVEPPSLKHALP-LYYIIAPAEASSNLSDLDELYPRIRDELLGDEVKRRI 320

Query: 163 EL---RRSRIITAVDYMQAQRARGKLIREVKESF-IVDAFIGNVTDWEKVCLG------- 211
           EL     S   +   Y++AQ+ R  L RE    F  +D  +   T      LG       
Sbjct: 321 ELGAYALSAGYSGAYYLKAQKVRRLLRREFAGLFEELDVLLSPTTPTPAPRLGEAADSPT 380

Query: 212 ---------------NLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIA 256
                          NL GLP I +PAGF          S     +   I  PP  D   
Sbjct: 381 VLYNLLDFTANTVPANLAGLPAISLPAGF----------SEDGLPVGLQIIGPPGDDETL 430

Query: 257 L 257
           L
Sbjct: 431 L 431

Length = 431
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
COG0154475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK06169466 putative amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK07486484 amidase; Provisional 100.0
PRK07235502 amidase; Provisional 100.0
PRK06102452 hypothetical protein; Provisional 100.0
PRK07056454 amidase; Provisional 100.0
PRK07487469 amidase; Provisional 100.0
PRK06170490 amidase; Provisional 100.0
PRK07042464 amidase; Provisional 100.0
PRK08137497 amidase; Provisional 100.0
PRK06061483 amidase; Provisional 100.0
TIGR00132460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK05962424 amidase; Validated 100.0
PRK07488472 indole acetimide hydrolase; Validated 100.0
PRK00012459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
PRK07139439 amidase; Provisional 100.0
PRK08310395 amidase; Provisional 100.0
TIGR02715452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK09201465 amidase; Provisional 100.0
PRK06529482 amidase; Provisional 100.0
PRK12470462 amidase; Provisional 100.0
PRK06828491 amidase; Provisional 100.0
PLN02722422 indole-3-acetamide amidohydrolase 100.0
PRK06707536 amidase; Provisional 100.0
PRK07869468 amidase; Provisional 100.0
PF01425441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
PRK11910615 amidase; Provisional 100.0
PRK06565566 amidase; Validated 100.0
KOG1212560 consensus Amidases [Translation, ribosomal structu 100.0
KOG1211506 consensus Amidases [Translation, ribosomal structu 100.0
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-52  Score=384.37  Aligned_cols=261  Identities=28%  Similarity=0.460  Sum_probs=198.3

Q ss_pred             CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCC-CCCCCC
Q 022256            1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDL-SSRDFP   79 (300)
Q Consensus         1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~-~~~~~~   79 (300)
                      +|+||+|||||||||+|||||||||||||+||||+.|+++.++++|++|||||||+|+++++++|+|.|+.|. .....+
T Consensus       169 ~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~~~~~~~~  248 (475)
T COG0154         169 LVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPP  248 (475)
T ss_pred             CcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCcccccccccC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999998884 222222


Q ss_pred             CCC-CCCCCCCccEEEEecch-------------HHHHHHHHHHCCCEEEEecCCcchhhHH-HHHhh-hhchhhhhhh-
Q 022256           80 FAD-PFSVDITKLTVGYLEDA-------------EMEVVQVLAEKGIKMVPFKLNYTVDSVQ-GILNF-TMDVDMLAHF-  142 (300)
Q Consensus        80 ~~~-~~~~~~~~lrIg~~~~~-------------~~~a~~~L~~~G~~vvev~~~~~~~~~~-~~~~~-~~~~~~~~~~-  142 (300)
                      ... ....+++++|||++.+.             ++++++.|+++|++|+++++|....... ..+.. ......+... 
T Consensus       249 ~~~~~~~~~~~~lrigv~~~~~~~~~~~~~v~~~~~~a~~~l~~~Ga~v~~v~lp~~~~~~~~~~~~~~~~~~~~~~~~~  328 (475)
T COG0154         249 VPPALAGKDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDYALAAYYLARFDGERYGLRA  328 (475)
T ss_pred             ccchhhccCCCCcEEEEECcccccCCCcHHHHHHHHHHHHHHHHCCCEEEeccCCchhhhhhhhHHHHHHhhhhhhhhcc
Confidence            221 22345788999998752             4578999999999999999884433221 11100 0000000000 


Q ss_pred             HH-HHhcCCCchhhhhhccHHHHHhhhccCHHHHHHHHHHHHHH---HHHHHHHcc-CcEEEecCCC-------------
Q 022256          143 DE-WQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKL---IREVKESFI-VDAFIGNVTD-------------  204 (300)
Q Consensus       143 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~a~~~r~~~---~~~~~~~~~-~D~li~P~~~-------------  204 (300)
                      .. +... ....+.+  ....++..|..++..+|.++...|.+.   ++++.+.|+ +|+|++|++.             
T Consensus       329 ~~~~~~~-~~~~~~~--~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~D~ll~Pt~~~~a~~ig~~~~~~  405 (475)
T COG0154         329 ADLYGKT-RAEGFGP--EVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDG  405 (475)
T ss_pred             hhhhhhh-hhhcccH--HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEeCCCCCCCcccccccccc
Confidence            00 1111 0111111  122457788899999999998888555   899999887 9999999742             


Q ss_pred             ---------CccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHHHHhhcCCCCCCC
Q 022256          205 ---------WEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVTDHHKQRP  274 (300)
Q Consensus       205 ---------~~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~lE~~~~~~~~~p  274 (300)
                               -.+|.++|++|+|++|||+|+..+|          +|+||||||++++|..||++|+++|++++|++++|
T Consensus       406 ~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~G----------lPvGlqlig~~~~d~~LL~~a~~~E~~~~~~~~~~  474 (475)
T COG0154         406 DDPLEMYLLDVFTVPANLAGLPAISVPAGFTADG----------LPVGLQLIGPAFDDATLLRLAAALEQALGWHRRPP  474 (475)
T ss_pred             cCHHHHhhhccccccccccCCCeEEeccCCCCCC----------CCeeEEEecCCCCHHHHHHHHHHHHHhhCCCCCCC
Confidence                     1357889999999999999998743          45999999999999999999999999999866554

>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK08137 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
2df4_A485 Structure Of Trna-Dependent Amidotransferase Gatcab 4e-16
3kfu_E471 Crystal Structure Of The Transamidosome Length = 47 5e-14
3al0_A475 Crystal Structure Of The Glutamine Transamidosome F 3e-13
3h0l_A478 Structure Of Trna-Dependent Amidotransferase Gatcab 6e-13
2gi3_A476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 2e-11
1m21_A503 Crystal Structure Analysis Of The Peptide Amidase P 2e-11
3a1k_A521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 5e-11
3a1i_A521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 1e-10
1obk_A414 Crystal Structure Of The R158q Mutant Of Malonamida 3e-07
1ock_A412 The Crystal Structure Of Malonamidase E2 From Brady 3e-07
1o9n_A414 Crystal Structure Of The K62a Mutant Of Malonamidas 3e-07
1obi_A414 Crystal Structure Of The G130a Mutant Of Malonamida 3e-07
1obj_A414 Crystal Structure Of The T150a Mutant Of Malonamida 3e-07
1obl_A414 Crystal Structure Of The S133a Mutant Of Malonamida 3e-07
1o9o_A414 Crystal Structure Of The S131a Mutant Of Malonamida 3e-07
1o9q_A414 Crystal Structure Of The S155c Mutant Of Malonamida 1e-06
3a2p_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 5e-06
3a2q_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 1e-05
2dc0_A434 Crystal Structure Of Amidase Length = 434 2e-05
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 7e-05
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure 
Iteration: 1

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 1   MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
           +VP ++GS+T GS+  P A CGV  ++PT+G V R G+++ + SLD++GP  R+  D  I
Sbjct: 166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAI 225
Query: 61  VLDAIQGKDPDDLSSR---DFPFADPFSVDITKLTV 93
           VL+AI G D +D +S    D  F      DI  L V
Sbjct: 226 VLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKV 261
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 Back     alignment and structure
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 2e-35
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 4e-31
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 4e-28
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 6e-27
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-26
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 4e-26
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 6e-26
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-25
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 3e-25
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 8e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
 Score =  131 bits (332), Expect = 2e-35
 Identities = 52/257 (20%), Positives = 85/257 (33%), Gaps = 48/257 (18%)

Query: 1   MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
           M+P A+G++T GS+  P A CG  A++P+F  +   GV   S +LD +G F   A D   
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

Query: 61  VLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLE-------DAEM-----EVVQVLA 108
            L A+ G+                        +G +        +          ++   
Sbjct: 203 GLLAMTGRSEFSGIV-----------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAE 251

Query: 109 EKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRR-- 166
             G  +    L   V     I     D +             D++          LR   
Sbjct: 252 RAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAP-------MLRASL 304

Query: 167 --SRIITAVDYMQAQRARGKLIREVKESFI-VDAFIG-------------NVTDWEKVCL 210
             +  +T  +Y +A+R   +  RE+ E F  VD  +              +  D     L
Sbjct: 305 DATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRL 364

Query: 211 GNLVGLPVIVVPAGFKN 227
             L+G P + VP     
Sbjct: 365 WTLMGNPCVNVPVLKVG 381
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 100.0
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
Probab=100.00  E-value=4.3e-53  Score=391.30  Aligned_cols=265  Identities=28%  Similarity=0.444  Sum_probs=200.9

Q ss_pred             CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCCCC-
Q 022256            1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFP-   79 (300)
Q Consensus         1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~~~-   79 (300)
                      ++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|.|.|+.|+.+.+.+ 
T Consensus       153 ~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~  232 (471)
T 3kfu_E          153 LAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPP  232 (471)
T ss_dssp             SCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCC
T ss_pred             CCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCc
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999988766544 


Q ss_pred             -CCCCCCCCCCccEEEEecc-----------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhchhhhhhhHHHHh
Q 022256           80 -FADPFSVDITKLTVGYLED-----------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQR  147 (300)
Q Consensus        80 -~~~~~~~~~~~lrIg~~~~-----------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (300)
                       +......+++++||||+.+           +++++++.|+++|++|+++++|.. +.....+...+..|....+..+..
T Consensus       233 ~~~~~~~~~~~~lrIgv~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~v~~p~~-~~~~~~~~~~~~~e~~~~~~~~~~  311 (471)
T 3kfu_E          233 RFQEALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWPSL-PQALAAYYILAPAEASSNLARYDG  311 (471)
T ss_dssp             CTTCCSCCCCSSCEEEEEGGGTTTCCHHHHHHHHHHHHHHHTTTCEEEEECCTTG-GGHHHHHHHHHHHHHHHHGGGCST
T ss_pred             chhhhhccCCCCCEEEEECCccCCCCHHHHHHHHHHHHHHHHcCCeeeeecCccH-HHHHHHHHHHHHHHHHHHHHHhhh
Confidence             1112223578999999864           346789999999999999998853 332222323333333222211100


Q ss_pred             ---c------CCCch-------hhhhhccHHHHHhhhc-----cCHHHHHHHHHHHHHHHHHHHHHcc-CcEEEecCCCC
Q 022256          148 ---S------GKDDV-------YEAQDQWPVELRRSRI-----ITAVDYMQAQRARGKLIREVKESFI-VDAFIGNVTDW  205 (300)
Q Consensus       148 ---~------~~~~~-------~~~~~~~~~~l~~~~~-----~s~~~~~~a~~~r~~~~~~~~~~~~-~D~li~P~~~~  205 (300)
                         .      ...+.       +.+.  ...++..+..     .+..+|.++++.|.++++++.++|+ +|+||+|+...
T Consensus       312 ~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~  389 (471)
T 3kfu_E          312 TLYGRRAAGEEVEGMMEATRALFGLE--VKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPH  389 (471)
T ss_dssp             TTTSCCCCCSSSHHHHHHHHTTSCHH--HHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSS
T ss_pred             hccccccchhhHHHHHHhhhhhcCHH--HHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCC
Confidence               0      00000       1111  1122333322     2334899999999999999999997 99999997521


Q ss_pred             ------------------ccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHHHHhhc
Q 022256          206 ------------------EKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVT  267 (300)
Q Consensus       206 ------------------~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~lE~~~  267 (300)
                                        .||.+||++|+|++|||+|+ .+          |+|+||||+|++++|+.||++|+++|++.
T Consensus       390 ~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~----------GlPvGlQlvg~~~~D~~LL~~A~~lE~~~  458 (471)
T 3kfu_E          390 PAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EG----------HLPVGLQLLAPWGEDERLLRAALAFEEAT  458 (471)
T ss_dssp             SCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ET----------TEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred             CCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CC----------CCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence                              26778999999999999998 54          35799999999999999999999999999


Q ss_pred             -CCCCCCCCCCCC
Q 022256          268 -DHHKQRPPIDNL  279 (300)
Q Consensus       268 -~~~~~~p~~~~~  279 (300)
                       +|+++.|+-++|
T Consensus       459 g~w~~~~p~~~~~  471 (471)
T 3kfu_E          459 ARAHLKAPLGEAL  471 (471)
T ss_dssp             SCCCCCTTCCC--
T ss_pred             cCcccCCCccccC
Confidence             999888876553
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 300
d2f2aa1485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 3e-34
d2gi3a1475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 1e-24
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 5e-08
d1m22a_490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 2e-07
d1mt5a_537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 3e-07
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  128 bits (321), Expect = 3e-34
 Identities = 75/331 (22%), Positives = 122/331 (36%), Gaps = 66/331 (19%)

Query: 1   MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
           +VP ++GS+T GS+  P A CGV  ++PT+G V R G+++ + SLD++GP  R+  D  I
Sbjct: 166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAI 225

Query: 61  VLDAIQGKDPDDLSSRDFP---FADPFSVDITKLTVGYLED------------AEMEVVQ 105
           VL+AI G D +D +S       F      DI  L V   ++            A    V+
Sbjct: 226 VLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVE 285

Query: 106 VLAEKGIKMVPFKLNYTVDSVQG--ILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVE 163
            L   G  +    L  T   +    ++  +     L+ FD  +         + ++    
Sbjct: 286 TLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKM 345

Query: 164 LR--------RSRII-----TAVDYMQAQRARGKLIREVKESFI------VDAFIGNVTD 204
            R        + RI       +  Y  A   + + +R + ++         D  +G    
Sbjct: 346 SRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAP 405

Query: 205 WEKVCLG-------------------NLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTG 245
                LG                   NL GLP I VP G    SN  P G      +   
Sbjct: 406 TTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ---SNGRPIG------LQ-- 454

Query: 246 IYAPPKHDHIALALAIAYQSVTDHHKQRPPI 276
               P  +     +A  Y++  + H     +
Sbjct: 455 FIGKPFDEKTLYRVAYQYETQYNLHDVYEKL 485
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
d2f2aa1485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d2gi3a1475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
d1mt5a_537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d1m22a_490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.2e-52  Score=391.10  Aligned_cols=262  Identities=26%  Similarity=0.393  Sum_probs=199.3

Q ss_pred             CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022256            1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPF   80 (300)
Q Consensus         1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~~~~   80 (300)
                      +++||+|||||||||+||+||||||||||+|+||++|++|+++++|++|||||||+|+++++++|.|.++.|+.+.+.+.
T Consensus       166 ~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~~~~~~~  245 (485)
T d2f2aa1         166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDD  245 (485)
T ss_dssp             SCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTTSCCCCC
T ss_pred             cCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccccccccccCCCCc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999887765543


Q ss_pred             CC---CCCCCCCccEEEEecc------------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhchhhhhhhHHH
Q 022256           81 AD---PFSVDITKLTVGYLED------------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEW  145 (300)
Q Consensus        81 ~~---~~~~~~~~lrIg~~~~------------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (300)
                      ..   ....+++++|||+..+            +++++++.|+++|++|+++++|........+ ......++...+..+
T Consensus       246 ~~~~~~~~~~~~~lrig~~~~~~~~~~~~~i~~a~~~a~~~L~~~G~~v~ev~lp~~~~~~~~~-~~~~~~e~~~~l~~~  324 (485)
T d2f2aa1         246 VDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSY-YVIASSEASSNLSRF  324 (485)
T ss_dssp             CCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHH-HHHHHHHHHHHTTTC
T ss_pred             cchhhhhcCCccCCEEEEEcccccCcCCHHHHHHHHHHHHHHHHCCCEEEEeCCCchhhhHHHH-HHHHHHHHHHHHHHh
Confidence            22   2335578999999864            3567899999999999999988643332221 111112222221111


Q ss_pred             Hh-------cCCC-----------chhhhhhccHHHHH-----hhhccCHHHHHHHHHHHHHHHHHHHHHcc-CcEEEec
Q 022256          146 QR-------SGKD-----------DVYEAQDQWPVELR-----RSRIITAVDYMQAQRARGKLIREVKESFI-VDAFIGN  201 (300)
Q Consensus       146 ~~-------~~~~-----------~~~~~~~~~~~~l~-----~~~~~s~~~~~~a~~~r~~~~~~~~~~~~-~D~li~P  201 (300)
                      ..       ....           +.+.+.  ...++.     ....+...+|.++++.|..+++.+.++|+ +|+||+|
T Consensus       325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~~~D~ll~P  402 (485)
T d2f2aa1         325 DGIRYGYHSKEAHSLEELYKMSRSEGFGKE--VKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGP  402 (485)
T ss_dssp             SSSSSSCCCSSCCSHHHHHHHHHHHHSCHH--HHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEE
T ss_pred             hhhhhccccccccCHHHHHHHhhhhhcCHH--HHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHccCCEEEeC
Confidence            00       0000           000000  111122     22344556678888889999999999996 9999999


Q ss_pred             CCC-------------------CccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHH
Q 022256          202 VTD-------------------WEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIA  262 (300)
Q Consensus       202 ~~~-------------------~~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~  262 (300)
                      +..                   +.||.+||++|+|++|||+|+.+           |+|+||||||++++|+.||++|++
T Consensus       403 t~~~~a~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~d-----------GlPvGlQiig~~~~D~~LL~~A~~  471 (485)
T d2f2aa1         403 TAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSN-----------GRPIGLQFIGKPFDEKTLYRVAYQ  471 (485)
T ss_dssp             SSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEET-----------TEEEEEEEECSTTCHHHHHHHHHH
T ss_pred             CCCCCCCCcccccCCHHHHhhhhHHHHHHHHHCCCeEEEECCCCC-----------CCCEeEEEECCCCCHHHHHHHHHH
Confidence            742                   23678899999999999999752           467999999999999999999999


Q ss_pred             HHhhcCCCCCCCCC
Q 022256          263 YQSVTDHHKQRPPI  276 (300)
Q Consensus       263 lE~~~~~~~~~p~~  276 (300)
                      ||++++|++..|+|
T Consensus       472 ~E~~~~~~~~~p~l  485 (485)
T d2f2aa1         472 YETQYNLHDVYEKL  485 (485)
T ss_dssp             HHHHSCCTTTGGGC
T ss_pred             HHhhCCCCcCCCCC
Confidence            99999999988865
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure