Citrus Sinensis ID: 022697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MRLKLVGTVLQNSEREVFRLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMRLEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFPTVTSSAQLISSTNEQSSDVVNAYHIGCFSEDAQ
Secondary Structure (PSIPRED)
ccccEEHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEccHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHcccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEHHccccHHHHHHHHHHHHHHHHHcHcccccccccccccccccccccccEEccccccccHcHHccHHHHHHHHHHHccccEEEEHHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccHcHHEEHHEHcHHHEEEEEEEcccccccHcEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHcHHHHccccccEEccccccccccccccccccccccccccccccccccccEEEcccccccc
Coil and Loop (DISEMBL)
MRLKLVGTVLQNSEREVFRLALKAFTDQkkrffphlddrvhdqstepeskkhcvpqalpasnqeelsdcKTLSDVLMRLEKevpnlkiftyERLDWLKrasslpssanesplellkehnfhsssklrpglqntvaadKVSVIELLFPSIFRAIVslhpvgtiepdavaffspdeggnyihargsSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLAlllppvsrpyrhffptvtssaqlisstneqssdVVNAYHIgcfsedaq
Flexible Loop (DISEMBL)
mrlklvgtvlqnsereVFRLALKAFTDQKKRFFPHLDDRVHDQstepeskkhcvpqalpasnqeelsdCKTLSDVLMRLEKevpnlkiftyerLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFPTVTSSAQLISSTNEQSSDVVNAYHIGCFSEDAQ
Low Complexity Region (SEG)
MRLKLVGTVLQNSEREVFRLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMRLEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGrllamdkrlalllPPVSRPYRHFFPTVTSSAQLISSTNEQSSDVVNAYHIGCFSEDAQ
Disordered region (IsUnstruct)
*****VGTVLQNSEREVFRLALKAFTDQKKRFFP***********************************KTLSDVLMRLEKEVPNLKIFTYERLDWLK*********************************NTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFPTVTSSA************VVNAYHIGCF*****
Disordered Region (DISOPRED)
***KLVGTVLQNSEREVFRLALKAFTDQKKRFFPHLDD******************************CKTLSDVLMRLEKEVPNLKIFTYERLDWLKRASSLP**ANESPLELL********************ADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFPTVT****************VNAYHIGCFS****
Disordered Region (DISEMBL)
MRLKLVGTVLQNSEREVFRLALKAFTDQKKRFFPHLDDR***************PQALPASNQEELSDCKTLSDVLMRLEKEVPNLKIFTYERLDWLKRAS**********LELLKEHNFHSSSKLRPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFPTVTSSAQLISSTNEQSSDVVNAYHIGCFSEDAQ
Disordered Region (DISPRO)
*RLKLVGTVLQNSEREVFRLALKAFTDQKKRFFPHLDD***************VPQALP**NQEELSDCKTLSDVLMRLEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNF*SSSKLRPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFPTVTSSAQLISSTNEQSSDVVNAY***CFS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLKLVGTVLQNSEREVFRLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASxxxxxxxxxxxxxxxxxxxxxVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFPTVTSSAQLISSTNEQSSDVVNAYHIGCFSEDAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q8RWM3	402	Mediator of RNA polymeras	yes	no	0.870	0.634	0.578	6e-83
Q55BX7	450	Putative mediator of RNA	yes	no	0.320	0.208	0.298	7e-06
Q7QCJ9	295	Mediator of RNA polymeras	yes	no	0.508	0.505	0.295	0.0004

>sp|Q8RWM3|MED27_ARATH Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana GN=MED27 PE=1 SV=1

 Score =  307 bits (786), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 158/273 (57%), Positives = 195/273 (71%), Gaps = 18/273 (6%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
           RLALKAFTDQK+RFFPH+DD +     EP SKKH     L  + +EE  D KTL D+  R
Sbjct: 147 RLALKAFTDQKRRFFPHIDDGL---KMEPSSKKHRASHLLLENGREEPVDYKTLPDIQSR 203

Query: 79  LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
           LEK VP++K+ TY RL+WLKRA+SLP S ++ P E  K   F SSSKLR GLQ  V  DK
Sbjct: 204 LEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKP-IFQSSSKLRSGLQTEVV-DK 261

Query: 139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
           ++VIEL FPS+FRAIVSL P G+++PDAVAFFSPDEGG+Y+HARG SVYHV++HITEHA 
Sbjct: 262 IAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHITEHAA 321

Query: 199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHF 258
           TALQ+FLG  T T+LY LL WICS++++FSK C+KCGRLLAMDK+ AL+LPP+ R Y+  
Sbjct: 322 TALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKKSALILPPLHRAYQEL 381

Query: 259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
              +             + DV  AYH  C  +D
Sbjct: 382 PLAL-------------NLDVCEAYHSSCSQDD 401

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
Arabidopsis thaliana (taxid: 3702)

>sp|Q55BX7|MED27_DICDI Putative mediator of RNA polymerase II transcription subunit 27 OS=Dictyostelium discoideum GN=med27 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 165 DAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETS-LYFLLHWICSY 223
           D ++FF   E  N+     SS Y++F+ I+E++  A+ ++       S L  +L WI S+
Sbjct: 322 DRISFFGVKE--NFDSLWASSKYNIFKKISENSFEAISYYSANPNGGSILKCILSWIWSF 379

Query: 224 QTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFP 260
           + LF + C  C  +L +D    + LPP  R + ++ P
Sbjct: 380 RGLFLEECKGCQDILHLDSPQYMYLPPSFRTFDNYTP 416

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7QCJ9|MED27_ANOGA Mediator of RNA polymerase II transcription subunit 27 OS=Anopheles gambiae GN=MED27 PE=3 SV=3

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 71/169 (42%), Gaps = 20/169 (11%)

Query: 98  KRASSLPSSANESP--LELLKEHNFHSSSKL---RPGLQNTVAADKVSVIELLFPSIFRA 152
           KR  SLPSS   +P  +E L     +++  L   RP + N       +++ +    + RA
Sbjct: 134 KRRRSLPSSHLATPQMVENLIGSIHYNNMNLKIARPFMTN-------AILHITIARVLRA 186

Query: 153 IVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTA-LQFFLGIRTET 211
            V L  +  IE   V  +              S + VFR + +HA +A L FF     E 
Sbjct: 187 AVILKGL-LIEWVTVKGYEESLLDGVDEQWTESRHQVFRKVQDHAHSAMLHFFSPTLPEL 245

Query: 212 SLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFP 260
           ++   + W  SY TLF+  C KCG      K L   LPP  R  R   P
Sbjct: 246 AIRSFITWFRSYVTLFADPCKKCG------KHLHNTLPPTWRDLRTLEP 288

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
255583588	434	conserved hypothetical protein [Ricinus	0.931	0.629	0.696	1e-107
224140028	417	predicted protein [Populus trichocarpa]	0.931	0.654	0.663	1e-104
225439176	419	PREDICTED: uncharacterized protein LOC10	0.935	0.653	0.677	1e-101
356573024	418	PREDICTED: uncharacterized protein LOC10	0.901	0.631	0.630	2e-92
356505433	425	PREDICTED: uncharacterized protein LOC10	0.901	0.621	0.626	3e-91
449437464	421	PREDICTED: mediator of RNA polymerase II	0.924	0.643	0.589	3e-89
297829452	402	hypothetical protein ARALYDRAFT_897068 [	0.870	0.634	0.589	1e-81
18398414	402	uncharacterized protein [Arabidopsis tha	0.870	0.634	0.578	4e-81
21537085	402	unknown [Arabidopsis thaliana]	0.870	0.634	0.575	2e-80
218187929	419	hypothetical protein OsI_01279 [Oryza sa	0.873	0.610	0.572	5e-78

>gi|255583588|ref|XP_002532550.1| conserved hypothetical protein [Ricinus communis] gi|223527739|gb|EEF29844.1| conserved hypothetical protein [Ricinus communis]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/277 (69%), Positives = 222/277 (80%), Gaps = 4/277 (1%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASN--QEELSDCKTLSDVL 76
           RLALKAFTDQK+RFFPHLDD V  Q+TE  SKK C  Q +P      EELSDCKTLSDVL
Sbjct: 157 RLALKAFTDQKRRFFPHLDDGVDGQNTESVSKKQCSLQVVPPVTLLVEELSDCKTLSDVL 216

Query: 77  MRLEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAA 136
            RLEKE+PN+KI T+ERLDWLKRASSLP+  +E+P+E  KEH FH+ +KLR G Q+ V+ 
Sbjct: 217 TRLEKEIPNVKISTFERLDWLKRASSLPAPVSENPIETSKEHTFHTLNKLRTGSQSAVSV 276

Query: 137 --DKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHIT 194
             DKV+VIELL PS+FRA+VSLHP G+I+PDAVAFFSPDEGG+YIHAR  SV+HVFR IT
Sbjct: 277 PTDKVAVIELLSPSVFRALVSLHPAGSIDPDAVAFFSPDEGGSYIHARSFSVHHVFRQIT 336

Query: 195 EHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRP 254
           EHA  ALQ FLGI+ E +L+ LLHWICSYQTLFSKVCSKCGRLLAMD++ +LLLPPV RP
Sbjct: 337 EHAAMALQHFLGIKAEIALFTLLHWICSYQTLFSKVCSKCGRLLAMDRKSSLLLPPVHRP 396

Query: 255 YRHFFPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
           YRHF P  + S Q ISST +Q  D   AYH GCFSED
Sbjct: 397 YRHFSPLESPSTQPISSTKDQGLDFPGAYHTGCFSED 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140028|ref|XP_002323389.1| predicted protein [Populus trichocarpa] gi|222868019|gb|EEF05150.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/273 (66%), Positives = 219/273 (80%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
           RLALKAFTDQK+RFFPHLD+    QSTEP SKKHC+P+ L  + QEELSDCKTLSDVL  
Sbjct: 144 RLALKAFTDQKRRFFPHLDEGQDVQSTEPASKKHCIPKDLLLNYQEELSDCKTLSDVLTC 203

Query: 79  LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
           LEKE+ NLK+ TYERLDW KRASSLP+SA+E+PL+  K+H FHS SKLR   Q+  A DK
Sbjct: 204 LEKEMLNLKVLTYERLDWFKRASSLPASASENPLDTSKDHGFHSLSKLRTVSQSAAATDK 263

Query: 139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
           ++VIEL FPS+FRAI+SLHP G+I+PDAVAFFSPDEGG+YIHARG SV+HVFR I+EHA 
Sbjct: 264 IAVIELFFPSVFRAIISLHPAGSIDPDAVAFFSPDEGGSYIHARGFSVHHVFRKISEHAA 323

Query: 199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHF 258
            ALQ FLG+ + T+LY ++HWIC YQTLF+KVCSKCG+LLAMD++  LLLPPV RPY HF
Sbjct: 324 MALQHFLGVSSRTALYSIVHWICCYQTLFTKVCSKCGKLLAMDRKSMLLLPPVYRPYLHF 383

Query: 259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
                +S Q  SS  +   + + A+HIGCF+E+
Sbjct: 384 STLQIASTQTNSSAKDHGLENLGAFHIGCFTEE 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439176|ref|XP_002274655.1| PREDICTED: uncharacterized protein LOC100258667 [Vitis vinifera] gi|296085885|emb|CBI31209.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/276 (67%), Positives = 222/276 (80%), Gaps = 2/276 (0%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPES--KKHCVPQALPASNQEELSDCKTLSDVL 76
           RLALKAFTDQK+RFFPHLDD ++ QS+  ES  KKHC  Q    + QEELSD +TLSDVL
Sbjct: 144 RLALKAFTDQKRRFFPHLDDGLNGQSSASESVPKKHCGSQISTVTQQEELSDYRTLSDVL 203

Query: 77  MRLEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAA 136
           M +EK++PN+KIFTY+RLDWLKRAS+LP SA E  ++  KEH+FH S+K R GL   VAA
Sbjct: 204 MHVEKDMPNMKIFTYQRLDWLKRASTLPCSAEEFLMDSSKEHDFHISNKPRLGLLGAVAA 263

Query: 137 DKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEH 196
           DKV+VIELLFPSIFRAI+SLHP G+I+PDAVAFFSPDEGG+Y+HARG SVYHVF+H+TEH
Sbjct: 264 DKVAVIELLFPSIFRAIISLHPAGSIDPDAVAFFSPDEGGSYVHARGFSVYHVFKHVTEH 323

Query: 197 AGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYR 256
           A  ALQ FLG  TET+LY LLHWI SYQTLF++ CSKC RLL+MD++  LLLPPV  PYR
Sbjct: 324 AAMALQHFLGTNTETALYSLLHWIFSYQTLFTEPCSKCKRLLSMDRQSDLLLPPVYHPYR 383

Query: 257 HFFPTVTSSAQLISSTNEQSSDVVNAYHIGCFSEDA 292
            F    +SS Q ISST  Q+ D  +AYH+GCFSE+A
Sbjct: 384 SFCAIKSSSPQSISSTKNQTLDASHAYHVGCFSEEA 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573024|ref|XP_003554665.1| PREDICTED: uncharacterized protein LOC100782776 [Glycine max]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/273 (63%), Positives = 210/273 (76%), Gaps = 9/273 (3%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
           RLALKAFTDQK+RFFPHLDD +  +++E  SKK C  + +    +E +S  +TL DVL  
Sbjct: 154 RLALKAFTDQKRRFFPHLDDGL--ETSESASKKCCGSEEIAVDPKEGISFLRTLPDVLKS 211

Query: 79  LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
           LEK+VPNLKI T+ERLDWLKRAS+L SS NE+ LE    HN+H S+KLR G   TV A+K
Sbjct: 212 LEKDVPNLKILTFERLDWLKRASTLTSSTNENSLE----HNYHGSNKLRLGSVGTVPAEK 267

Query: 139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
           V+VIELLFP +FRA++SLHP G+++PDAVAFF+PDE G+Y+HARG SV+HVFRHITE+A 
Sbjct: 268 VAVIELLFPCVFRAVISLHPAGSMDPDAVAFFAPDESGSYVHARGFSVHHVFRHITEYAA 327

Query: 199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHF 258
           TALQ+FLG ++ET LYFLLHWICSYQTLFS+ CSKC RLLAMDK+  LLLPPV RPY  F
Sbjct: 328 TALQYFLGNQSETCLYFLLHWICSYQTLFSRPCSKCSRLLAMDKQSTLLLPPVHRPYWQF 387

Query: 259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
                S   L  S+ +Q+SD   AYHI C SE+
Sbjct: 388 ---SFSKILLNISSKDQNSDTTQAYHIDCLSEE 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505433|ref|XP_003521495.1| PREDICTED: uncharacterized protein LOC100796886 [Glycine max]

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 171/273 (62%), Positives = 208/273 (76%), Gaps = 9/273 (3%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
           RLALKAFTDQK+RFFPHLDD +  +++E  SKK C  + +    +E +S  +TL DVL  
Sbjct: 161 RLALKAFTDQKRRFFPHLDDGL--ETSESASKKCCGSEEIAVDPKEGISFLRTLPDVLKS 218

Query: 79  LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
           LEK+VPNLKI T+ERLDWLKRAS+L  S NE+ LE    HN+H S+KLR G   TV A+K
Sbjct: 219 LEKDVPNLKILTFERLDWLKRASTLTLSTNENYLE----HNYHGSNKLRLGSVGTVPAEK 274

Query: 139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
           V+VIELLFP +FRA++SLHP G+++PD VAFF+PDE G+Y+HARG SV+HVFRHITE+A 
Sbjct: 275 VAVIELLFPCVFRAVISLHPAGSMDPDVVAFFAPDESGSYVHARGFSVHHVFRHITEYAA 334

Query: 199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHF 258
           TALQ+FLG ++ET LYFLLHWICSYQTLFSK CSKC RLLAMDK+  LLLPPV RPY  F
Sbjct: 335 TALQYFLGNQSETCLYFLLHWICSYQTLFSKPCSKCSRLLAMDKQSTLLLPPVHRPYWQF 394

Query: 259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
                S   L  S+ +Q+SD   AYHI C SE+
Sbjct: 395 ---SFSKILLNISSKDQNSDTTQAYHIDCLSEE 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437464|ref|XP_004136512.1| PREDICTED: mediator of RNA polymerase II transcription subunit 27-like [Cucumis sativus] gi|449515406|ref|XP_004164740.1| PREDICTED: mediator of RNA polymerase II transcription subunit 27-like [Cucumis sativus]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 161/273 (58%), Positives = 203/273 (74%), Gaps = 2/273 (0%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
           RLALKAFTDQK+RFFPHL+D  +  + EP  KK C    +    Q EL D ++LSD+L  
Sbjct: 150 RLALKAFTDQKRRFFPHLEDE-NASNNEPALKKPCFSHGVTDVKQNELIDSRSLSDILSC 208

Query: 79  LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
           +EKEVP LKIFTYERLDWLK+AS+LPS ANE+ +  LKEH++HS  ++ PG      ADK
Sbjct: 209 MEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSP-RMSPGALGATPADK 267

Query: 139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
             VIEL+ PS+FRA+VSLHPVG++EPDA+AFFSPDE G+++HARG S YH+FRH+TEHA 
Sbjct: 268 AGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHLFRHVTEHAA 327

Query: 199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHF 258
           T LQ+FLG + + +LY LL WICSYQ LFSK CSKCGR L+++K+  LLLPP  RPY+ F
Sbjct: 328 TVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPAVRPYKQF 387

Query: 259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
             +  SS   I+S  +Q  D V A+HI CFSE+
Sbjct: 388 CASKNSSVVPITSLKDQKLDSVQAFHIDCFSEE 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829452|ref|XP_002882608.1| hypothetical protein ARALYDRAFT_897068 [Arabidopsis lyrata subsp. lyrata] gi|297328448|gb|EFH58867.1| hypothetical protein ARALYDRAFT_897068 [Arabidopsis lyrata subsp. lyrata]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/273 (58%), Positives = 198/273 (72%), Gaps = 18/273 (6%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
           RLALKAFTDQK+RFFPH+DD +     EP SKKH     L  + +EE  D KTL D+  R
Sbjct: 147 RLALKAFTDQKRRFFPHIDDGL---KMEPSSKKHRASHFLLENGREEPVDYKTLPDIQSR 203

Query: 79  LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
           LEK VPN+K+ TY RL+WLKRA+SLP S ++ P E  K   F SSSKLR GLQ  V  DK
Sbjct: 204 LEKLVPNVKVSTYGRLNWLKRANSLPGSGSDDPTEGSKP-IFQSSSKLRSGLQTEVV-DK 261

Query: 139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
           ++VIEL FPS+FRAIVSL+P G+++PDAVAFFSPDEGG+Y+HARG SVYHV++H+TEHA 
Sbjct: 262 IAVIELSFPSLFRAIVSLNPAGSVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHMTEHAA 321

Query: 199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHF 258
           TALQ+FLG  T T+LY LL WICS+++LFSK C+KCGRLLAMDK+ AL+LPP+ R Y+  
Sbjct: 322 TALQYFLGFGTGTALYSLLLWICSFESLFSKPCTKCGRLLAMDKKSALILPPLHRAYQ-- 379

Query: 259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
                   +L  + N    DV  AYH  C  +D
Sbjct: 380 --------ELPLALN---LDVCEAYHSSCSQDD 401

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398414|ref|NP_566345.1| uncharacterized protein [Arabidopsis thaliana] gi|75158718|sp|Q8RWM3.1|MED27_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 27; AltName: Full=Mediator of RNA polymerase II transcription subunit 3 gi|20260202|gb|AAM12999.1| unknown protein [Arabidopsis thaliana] gi|56382015|gb|AAV85726.1| At3g09180 [Arabidopsis thaliana] gi|332641213|gb|AEE74734.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 158/273 (57%), Positives = 195/273 (71%), Gaps = 18/273 (6%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
           RLALKAFTDQK+RFFPH+DD +     EP SKKH     L  + +EE  D KTL D+  R
Sbjct: 147 RLALKAFTDQKRRFFPHIDDGL---KMEPSSKKHRASHLLLENGREEPVDYKTLPDIQSR 203

Query: 79  LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
           LEK VP++K+ TY RL+WLKRA+SLP S ++ P E  K   F SSSKLR GLQ  V  DK
Sbjct: 204 LEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKP-IFQSSSKLRSGLQTEVV-DK 261

Query: 139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
           ++VIEL FPS+FRAIVSL P G+++PDAVAFFSPDEGG+Y+HARG SVYHV++HITEHA 
Sbjct: 262 IAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHITEHAA 321

Query: 199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHF 258
           TALQ+FLG  T T+LY LL WICS++++FSK C+KCGRLLAMDK+ AL+LPP+ R Y+  
Sbjct: 322 TALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKKSALILPPLHRAYQEL 381

Query: 259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
              +             + DV  AYH  C  +D
Sbjct: 382 PLAL-------------NLDVCEAYHSSCSQDD 401

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537085|gb|AAM61426.1| unknown [Arabidopsis thaliana]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/273 (57%), Positives = 194/273 (71%), Gaps = 18/273 (6%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
           RLALKAFTDQK+RFFPH+DD +     EP SKKH     L  + +EE  D KTL D+  R
Sbjct: 147 RLALKAFTDQKRRFFPHIDDGL---KMEPSSKKHRASHLLLENGREEPVDYKTLPDIQSR 203

Query: 79  LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
           LEK VP++K+ TY RL+WLKRA+SLP S ++ P E  K   F SSSKLR GLQ  V  DK
Sbjct: 204 LEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKP-IFQSSSKLRSGLQTEVV-DK 261

Query: 139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
           ++VIEL FPS+FRAIVSL P  +++PDAVAFFSPDEGG+Y+HARG SVYHV++HITEHA 
Sbjct: 262 IAVIELSFPSLFRAIVSLSPAASVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHITEHAA 321

Query: 199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHF 258
           TALQ+FLG  T T+LY LL WICS++++FSK C+KCGRLLAMDK+ AL+LPP+ R Y+  
Sbjct: 322 TALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKKSALILPPLHRAYQEL 381

Query: 259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
              +             + DV  AYH  C  +D
Sbjct: 382 PLAL-------------NLDVCEAYHSSCSQDD 401

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218187929|gb|EEC70356.1| hypothetical protein OsI_01279 [Oryza sativa Indica Group] gi|222618151|gb|EEE54283.1| hypothetical protein OsJ_01196 [Oryza sativa Japonica Group]

 Score =  297 bits (760), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 157/274 (57%), Positives = 190/274 (69%), Gaps = 18/274 (6%)

Query: 19  RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
           RLALKAFTDQK+RFFPHLDD   +   + E      P+ LPASN E   + +TLS++L  
Sbjct: 164 RLALKAFTDQKRRFFPHLDDEGFNHLHDGEPGLAKKPR-LPASNGE--LEERTLSEILKN 220

Query: 79  LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
           LE EVPN+KIFTY RLDW KRA+SL +  N+  ++  KE N  + SK   G  +T   D+
Sbjct: 221 LENEVPNMKIFTYRRLDWSKRAASLATLMNDDFVDPSKELNLQNMSK--SGSGDTTPIDQ 278

Query: 139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
           V++IELL PSIFRAIVSLHP G+ +PDAVAFFSP EGG+Y+HARG SV+HVF+H++EHA 
Sbjct: 279 VAIIELLAPSIFRAIVSLHPAGSTDPDAVAFFSPTEGGSYLHARGLSVHHVFKHVSEHAD 338

Query: 199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHF 258
            ALQ+F+ +    SL  LL WI SYQTLF+KVCSKCGRLL MDK LALLLPPV RPY H 
Sbjct: 339 KALQYFVSVEPTKSLSLLLRWIASYQTLFTKVCSKCGRLLLMDKSLALLLPPVQRPYHH- 397

Query: 259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSEDA 292
                        T+   SD  +AYHIGC S DA
Sbjct: 398 ------------QTSSVGSDPQDAYHIGCSSYDA 419

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2083534	402	AT3G09180 "AT3G09180" [Arabido	0.870	0.634	0.549	9.9e-71

TAIR|locus:2083534 AT3G09180 "AT3G09180" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 150/273 (54%), Positives = 185/273 (67%)

Query:    19 RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
             RLALKAFTDQK+RFFPH+DD +     EP SKKH     L  + +EE  D KTL D+  R
Sbjct:   147 RLALKAFTDQKRRFFPHIDDGL---KMEPSSKKHRASHLLLENGREEPVDYKTLPDIQSR 203

Query:    79 LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
             LEK VP++K+ TY RL+WLKRA+SLP S ++ P E  K   F SSSKLR GLQ  V  DK
Sbjct:   204 LEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKPI-FQSSSKLRSGLQTEVV-DK 261

Query:   139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
             ++VIEL FPS+FRAIVSL P G+++PDAVAFFSPDEGG+Y+HARG SVYHV++HITEHA 
Sbjct:   262 IAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHITEHAA 321

Query:   199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGXXXXXXXXXXXXXPPVSRPYRHF 258
             TALQ+FLG  T T+LY LL WICS++++FSK C+KCG             PP+ R Y+  
Sbjct:   322 TALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKKSALILPPLHRAYQ-- 379

Query:   259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
                     +L  + N    DV  AYH  C  +D
Sbjct:   380 --------ELPLALN---LDVCEAYHSSCSQDD 401


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      293       280   0.00082  115 3  11 22  0.48    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  203 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.40u 0.13s 26.53t   Elapsed:  00:00:01
  Total cpu time:  26.40u 0.13s 26.53t   Elapsed:  00:00:01
  Start:  Mon May 20 15:46:26 2013   End:  Mon May 20 15:46:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016592 "mediator complex" evidence=IDA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RWM3	MED27_ARATH	No assigned EC number	0.5787	0.8703	0.6343	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
pfam11571	91	pfam11571, Med27, Mediator complex subunit 27	2e-16

>gnl|CDD|221137 pfam11571, Med27, Mediator complex subunit 27

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 38/126 (30%), Positives = 49/126 (38%), Gaps = 37/126 (29%)

Query: 163 EPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRT-ETSLYFLLHWIC 221
           + D V+ ++P              Y VFR +T+ A  A+  FL  R    +L  LL WI 
Sbjct: 1   DLDEVSLWAPSR------------YKVFRKLTDSAEEAILHFLNSRPPPWALASLLDWIS 48

Query: 222 SYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFPTVTSSAQLISSTNEQSSDVVN 281
           SY  LFS  C+KCG+LL+     A  LPP  R                            
Sbjct: 49  SYVDLFSTPCAKCGKLLSS----AAFLPPTRRTKD--------------------LTNWE 84

Query: 282 AYHIGC 287
           AYH  C
Sbjct: 85  AYHESC 90

Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PF11571	90	Med27: Mediator complex subunit 27; InterPro: IPR0	99.96

>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species

Probab=99.96  E-value=7.6e-30  Score=198.91  Aligned_cols=86  Identities=48%  Similarity=0.790  Sum_probs=77.8

Q ss_pred             ccCCcCcchhhHHhhHHhHHHHhhccc-CCCchhHHHHHHHHHHHhhhhchHhhhHHHHhhhccccccCCCCCccccCCC
Q 022697          179 IHARGSSVYHVFRHITEHAGTALQFFL-GIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRH  257 (293)
Q Consensus       179 l~~ws~Sry~VFRKITEHA~~AL~~F~-s~~PetaLrsFLtWL~SYr~LFs~PCkkCgklL~~Ds~~~~~LPPtwRDfR~  257 (293)
                      +++|++|+|+|||++|+||++||+||. ++.|+.+|++||+||+||++||++||++|||+|    ++.++|||+||+++.
T Consensus         4 ~~~~~~S~~~v~~~~t~~a~~al~~~~~~~~~~~~l~~ll~~l~sY~~lfs~pC~~C~klL----~~~~~LPP~~r~~~~   79 (90)
T PF11571_consen    4 VDPWSPSRYKVFRKITEHANTALLHFINSRPPEWDLRSLLDWLSSYRNLFSTPCKKCGKLL----SSKAFLPPVRRPKDF   79 (90)
T ss_pred             cccccchhhhhhhhhhHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhhhccchhhHHHhHh----hhcccCCCeeecccC
Confidence            589999999999999999999988776 799999999999999999999999999999999    233599999998777


Q ss_pred             CCcccccchhhccccccCCCccccccccccC
Q 022697          258 FFPTVTSSAQLISSTNEQSSDVVNAYHIGCF  288 (293)
Q Consensus       258 ~~~~~~~s~~~~~~~~~~~~d~~~AYH~gC~  288 (293)
                      .+                    .+|||++|+
T Consensus        80 ~~--------------------~~ayH~~C~   90 (90)
T PF11571_consen   80 RS--------------------WEAYHEGCR   90 (90)
T ss_pred             CC--------------------CcccCcccC
Confidence            63                    499999995

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d2dloa1	35	Thyroid receptor interacting protein 6, TRIP6 {Hum	88.46

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.018  Score=37.56  Aligned_cols=12  Identities=17%  Similarity=0.609  Sum_probs=9.9

Q ss_pred             HhhhHHHHhhhc
Q 022697          229 KVCSKCGRLLAM  240 (293)
Q Consensus       229 ~PCkkCgklL~~  240 (293)
                      ++|.+||+.+..
T Consensus         9 EkC~~C~~~I~d   20 (35)
T d2dloa1           9 EKCATCSQPILD   20 (35)
T ss_dssp             CBCTTTCCBCCS
T ss_pred             HHHHHhchHHHH
Confidence            689999988765