Citrus Sinensis ID: 022723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccHHHcccccccccEEEEEcccccHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHcccccEEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccccccccccccccccccEEEEcccccccHHHHHHHHHHHcccccccccEEEEEEEcccEEEEEEEEEEEEcccccccEEEcccccEEEEEEEccccccccccEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHccccHHEccccccHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEEEEcccccccccccccccccEEEEccccccHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEEEEEEEcccccEEEEEEccccEEEEEEEEEccccccccccEEEEEccccccHHHHHHccc
Coil and Loop (DISEMBL)
MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEAlqegkpiptelRNEEAALRQEidledentaiprshiddeyanaterdpkillttsrdpsaplTQFVKELKFvfpnaqrmnrggQVISEIIETCRAHEFTDVVLVHehrgvpdgliichlpfgptayfGLLNVvtrhdikdrksigtmpeayphLILDNFKSKLGERTANILKhlfpvpkadtkRIITFANQSDYISFRHHiyekqggpkslelkeigprFELRLYQIKLGTVDQSEAQIEWVIRpymntskkrkflgd
Flexible Loop (DISEMBL)
mlrrnirlrreylyrkslegkerllyEKKRKikealqegkpiptelrnEEAALRQEIdledentaiprshiddeyanaterdpkillttsrdpsaPLTQFVKELKFVfpnaqrmnrGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKsigtmpeayphLILDNFKSKLGERTANILKhlfpvpkadtKRIITFANQSDYISFRHHIyekqggpkslelKEIGPRFELRLYQIKLgtvdqseaqiewvirpymntskkrkflgd
Low Complexity Region (SEG)
MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD
Disordered region (IsUnstruct)
**********EYLYR*********************************************************************************LTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYM***********
Disordered Region (DISOPRED)
**R***RLRR**********************************************IDLEDENTAIPR***********ERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSK**KFL**
Disordered Region (DISEMBL)
MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD
Disordered Region (DISPRO)
MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDE****PRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRRNIRLRREYLYRKSxxxxxxxxxxxxxxxxxxxxxGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q5PQR5	291	U3 small nucleolar ribonu	yes	no	0.941	0.948	0.558	1e-88
Q8VHZ7	291	U3 small nucleolar ribonu	yes	no	0.941	0.948	0.558	1e-88
Q0VD01	291	U3 small nucleolar ribonu	yes	no	0.941	0.948	0.551	9e-88
Q5R947	291	U3 small nucleolar ribonu	yes	no	0.941	0.948	0.551	1e-87
Q96G21	291	U3 small nucleolar ribonu	yes	no	0.941	0.948	0.551	1e-87
O62518	292	Brix domain-containing pr	yes	no	0.965	0.969	0.518	3e-83
O13823	289	U3 small nucleolar ribonu	yes	no	0.938	0.951	0.498	1e-76
Q6C804	283	U3 small nucleolar ribonu	yes	no	0.959	0.992	0.477	1e-75
P53941	290	U3 small nucleolar ribonu	yes	no	0.972	0.982	0.472	6e-74
Q6BYD9	284	U3 small nucleolar ribonu	yes	no	0.962	0.992	0.455	6e-73

>sp|Q5PQR5|IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1

 Score =  326 bits (835), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/281 (55%), Positives = 205/281 (72%), Gaps = 5/281 (1%)

Query: 12  YLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI 71
           YLYRK+ E  +R + EKK ++K AL+E + IPTELR E  AL+  ++ +D       SH+
Sbjct: 12  YLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHV 71

Query: 72  DDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAH 131
           DDEY  A   DPK+++TTSRDPS+ L  F KELK VFP AQRMNRG   +  ++  C+A+
Sbjct: 72  DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKAN 131

Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLIL 191
             TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +GTM EA PHLI 
Sbjct: 132 GVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLIT 188

Query: 192 DNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEI 251
             F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K    +++EL E+
Sbjct: 189 HGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH-RNVELTEV 247

Query: 252 GPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
           GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct: 248 GPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288

Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.
Rattus norvegicus (taxid: 10116)

>sp|Q8VHZ7|IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1

 Score =  326 bits (835), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/281 (55%), Positives = 205/281 (72%), Gaps = 5/281 (1%)

Query: 12  YLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI 71
           YLYRK+ E  +R + EKK ++K AL+E + IPTELR E  AL+  ++ +D       SH+
Sbjct: 12  YLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHV 71

Query: 72  DDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAH 131
           DDEY  A   DPK+++TTSRDPS+ L  F KELK VFP AQRMNRG   +  ++  C+A+
Sbjct: 72  DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKAN 131

Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLIL 191
             TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +GTM EA PHLI 
Sbjct: 132 GVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLIT 188

Query: 192 DNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEI 251
             F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K    +++EL E+
Sbjct: 189 HGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH-RNVELTEV 247

Query: 252 GPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
           GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct: 248 GPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288

Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.

Mus musculus (taxid: 10090)

>sp|Q0VD01|IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1

 Score =  323 bits (828), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 155/281 (55%), Positives = 204/281 (72%), Gaps = 5/281 (1%)

Query: 12  YLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI 71
           YLYRK+ E  ER   E+K K++ AL+E + IPTELR E  AL+  ++ +D       +H+
Sbjct: 12  YLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTNHV 71

Query: 72  DDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAH 131
           DDEY  A   DPK+++TTSRDPS+ L  F KELK VFP AQRMNRG   +  ++  C+A+
Sbjct: 72  DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKAN 131

Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLIL 191
             TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +GT  EA PHLI+
Sbjct: 132 GVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTASEAKPHLIM 188

Query: 192 DNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEI 251
             F S+LG+R ++IL++LFPVPK D++R+ITFANQ DYISFRHH+Y+K    +++EL E+
Sbjct: 189 HGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKKTNH-RNVELTEV 247

Query: 252 GPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
           GPRFEL+LY I+LGT++Q + A +EW   PY NT+ KR FL
Sbjct: 248 GPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288

Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.

Bos taurus (taxid: 9913)

>sp|Q5R947|IMP4_PONAB U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2

 Score =  323 bits (827), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/281 (55%), Positives = 204/281 (72%), Gaps = 5/281 (1%)

Query: 12  YLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI 71
           YLYRK+ E  +R   E+K +++ AL+E + IPTELR E  AL+  ++ +D       SH+
Sbjct: 12  YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHV 71

Query: 72  DDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAH 131
           DDEY  A   DPK+++TTSRDPS+ L  F KELK VFP AQRMNRG   +  ++  C+A+
Sbjct: 72  DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKAN 131

Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLIL 191
             TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +GTM EA PHLI 
Sbjct: 132 GVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLIT 188

Query: 192 DNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEI 251
             F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K    +++EL E+
Sbjct: 189 HGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH-RNVELTEV 247

Query: 252 GPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
           GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct: 248 GPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288

Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.

Pongo abelii (taxid: 9601)

>sp|Q96G21|IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1

 Score =  323 bits (827), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/281 (55%), Positives = 204/281 (72%), Gaps = 5/281 (1%)

Query: 12  YLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI 71
           YLYRK+ E  +R   E+K +++ AL+E + IPTELR E  AL+  ++ +D       SH+
Sbjct: 12  YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHV 71

Query: 72  DDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAH 131
           DDEY  A   DPK+++TTSRDPS+ L  F KELK VFP AQRMNRG   +  ++  C+A+
Sbjct: 72  DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKAN 131

Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLIL 191
             TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +GTM EA PHLI 
Sbjct: 132 GVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLIT 188

Query: 192 DNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEI 251
             F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K    +++EL E+
Sbjct: 189 HGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH-RNVELTEV 247

Query: 252 GPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
           GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct: 248 GPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288

Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.

Homo sapiens (taxid: 9606)

>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=4 SV=1

 Score =  308 bits (789), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 152/293 (51%), Positives = 203/293 (69%), Gaps = 10/293 (3%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           M+RR  RLRRE+++RKSLE K++ L EK+ KI+ AL+    I   LR +   L +  D  
Sbjct: 1   MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDWG 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
            +     +   D EY  A  +DPKI++TTSRDPS+ L  F KE+K +FPNAQR+NRG   
Sbjct: 61  GQ-----QYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYD 115

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           + ++++  +A + TD+++  E RG PDG+++CHLPFGPTA+F + NVV RHDI +    G
Sbjct: 116 VKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPN---CG 172

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
           TM E YPHLI DN  SKLG R   ILKHLFPVPK D+KRIITF+N  DYISFRHH+Y+ +
Sbjct: 173 TMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVYKTE 232

Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFLG 292
              + +EL E GPRFEL+ YQIKLGT++  + A+ EWV+R Y NT++KR FL 
Sbjct: 233 NDGE-VELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFLS 284

Caenorhabditis elegans (taxid: 6239)

>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp4 PE=3 SV=1

 Score =  286 bits (733), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 142/285 (49%), Positives = 202/285 (70%), Gaps = 10/285 (3%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRR +R RR+++Y+++ E +E  L EK+R +++AL+  K +  +L+ E++ L+++    
Sbjct: 1   MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQ-EDSQLQKDYKY- 58

Query: 61  DENTAI---PRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 117
           DE+ A      +++DDEY    ER+PK+L+TTSR+PS+ L QF KE++ + PN+ R+NRG
Sbjct: 59  DESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRG 118

Query: 118 GQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRK 177
             V+  ++E  RA++ TD+V++HEHRG+PDGL+I HLP+GPT  F L NVV RHDI +  
Sbjct: 119 NIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPN-- 176

Query: 178 SIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHI 236
             GTM EAYPHLI +N  SKLG+R    L  LFP  PK  T R++TFAN  DYISFRHHI
Sbjct: 177 -TGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHI 235

Query: 237 YEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY 281
           Y K  GPK + L E GPRFE++L++I LGTVD  +A +EW ++PY
Sbjct: 236 YAKT-GPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPY 279

Component of the U3 small nucleolar ribonucleoprotein. Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1

 Score =  283 bits (724), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 140/293 (47%), Positives = 200/293 (68%), Gaps = 12/293 (4%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           M+RR  R RREYLYRKSL+ +E    +K++++K AL  GKP+P ++ ++E  LR+ I   
Sbjct: 1   MIRRQARERREYLYRKSLQLQEATKIQKRQQLKAALASGKPLPKDVADDEE-LRKTIAY- 58

Query: 61  DENTAIPRSHIDDEY-ANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQ 119
           DE+    +  IDDEY A +   DPK+++TTSRDPS  L+QF KE+K +FP + R+NRGG 
Sbjct: 59  DESV---QDEIDDEYSAMSGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNRGGT 115

Query: 120 VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSI 179
           V+  ++  C+    +D++++HEHRGVP  + + H P GPTAYF L NVV RHD+ D    
Sbjct: 116 VLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPD---T 172

Query: 180 GTMPEAYPHLILDNFKSKLGERTANILKHLFPVP-KADTKRIITFANQSDYISFRHHIYE 238
           G M E +PHLI DNF + LG+R   ILKHLFP   K D+ R+ITFAN+ D+IS R H+Y 
Sbjct: 173 GNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQHVYV 232

Query: 239 KQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
           K    + +EL E+GPRFE+RLY ++LGT++  +A +EW +  +M T+ K+ +L
Sbjct: 233 KTR--EGVELAEVGPRFEMRLYDLRLGTLENKDADVEWRMHGFMRTANKKDYL 283

Component of the U3 small nucleolar ribonucleoprotein. Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|P53941|IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1 SV=1

 Score =  277 bits (709), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 140/296 (47%), Positives = 200/296 (67%), Gaps = 11/296 (3%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAA---LRQEI 57
           MLRR  R RREYLYRK+ E ++  L +K++ IK+AL +GKP+P EL  +E+     R + 
Sbjct: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60

Query: 58  DLEDENTAIPRSHIDDEYANATE-RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNR 116
            L++   A     +DDEYA  +   DP+I++TTSRDPS  L+QF KE+K +FPNA R+NR
Sbjct: 61  SLKESEEA-DDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNR 119

Query: 117 GGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDR 176
           G  V+  +++ C+    TD+V++HEHRGVP  L I H P GPTA F L NVV RHDI + 
Sbjct: 120 GNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIIN- 178

Query: 177 KSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHH 235
              G   E  PHLI DNF + LG+R   ILKHLF   PK D++R+ITFAN+ D+IS R H
Sbjct: 179 --AGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236

Query: 236 IYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
           +Y +    + +E+ E+GPRFE+RL++++LGT++  +A +EW +R ++ T+ K+ +L
Sbjct: 237 VYVRTR--EGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290

Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6BYD9|IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IMP4 PE=3 SV=2

 Score =  274 bits (700), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 134/294 (45%), Positives = 199/294 (67%), Gaps = 12/294 (4%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           M+R+  R RREYLYRKSLE +E  L EK++++K AL  GKP+  EL  ++   +  I  E
Sbjct: 1   MIRKQARERREYLYRKSLELQESSLTEKRQQLKAALASGKPLSKELAEDKELQKDFIYDE 60

Query: 61  DENTAIPRSHIDDEYANATE-RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQ 119
            E T      IDDEY+  +   +PK+L+TTSR+PS  L QF KE+K +FPN+ ++NRG  
Sbjct: 61  SEQT-----EIDDEYSALSGISEPKVLITTSRNPSVKLLQFSKEIKLMFPNSIKLNRGNY 115

Query: 120 VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSI 179
           VI++++ TC+  + +D++++HEHRG+P  L I H P GP+  F L NV  RHD+ +   I
Sbjct: 116 VITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDLPE---I 172

Query: 180 GTMPEAYPHLILDNFKSKLGERTANILKHLFPVP-KADTKRIITFANQSDYISFRHHIYE 238
           G   E+YPHL+ +NF S+LG+R   I+KHLFP   K D+ R+ITF N  D+IS RHH+Y 
Sbjct: 173 GNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHHMYV 232

Query: 239 KQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLG 292
           K     ++EL E+GPRFE+RLY+++LG +D  ++++EW +R ++ T  ++ +LG
Sbjct: 233 KTKD--TVELSEVGPRFEMRLYELRLGLLDNKDSEVEWQLRRFIRTGNRKNYLG 284

Component of the U3 small nucleolar ribonucleoprotein. Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
225449863	293	PREDICTED: U3 small nucleolar ribonucleo	1.0	1.0	0.918	1e-159
224075818	293	predicted protein [Populus trichocarpa]	1.0	1.0	0.918	1e-159
224053310	293	predicted protein [Populus trichocarpa]	1.0	1.0	0.918	1e-158
118483045	293	unknown [Populus trichocarpa]	1.0	1.0	0.911	1e-158
255544049	293	U3 small nucleolar ribonucleoprotein pro	1.0	1.0	0.897	1e-156
363814284	293	uncharacterized protein LOC100803810 [Gl	1.0	1.0	0.894	1e-155
363808124	293	uncharacterized protein LOC100814677 [Gl	1.0	1.0	0.880	1e-154
449451998	293	PREDICTED: U3 small nucleolar ribonucleo	0.996	0.996	0.880	1e-152
357456827	291	U3 small nucleolar ribonucleoprotein IMP	0.993	1.0	0.862	1e-150
297837007	294	hypothetical protein ARALYDRAFT_893060 [	1.0	0.996	0.812	1e-144

>gi|225449863|ref|XP_002265279.1| PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Vitis vinifera] gi|147790699|emb|CAN61017.1| hypothetical protein VITISV_041221 [Vitis vinifera] gi|296081284|emb|CBI17728.3| unnamed protein product [Vitis vinifera]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/293 (91%), Positives = 287/293 (97%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRRNIRLRREY+YRKSLEGKERLLYEKKRKIKEAL+EGKPIPTELRNEEAALRQEIDLE
Sbjct: 1   MLRRNIRLRREYIYRKSLEGKERLLYEKKRKIKEALEEGKPIPTELRNEEAALRQEIDLE 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
           DE TA+PRSHIDDEYANATE+DPKILLTTSR+PSAPLTQFVKELKFVFPNAQRMNRGGQV
Sbjct: 61  DEQTAVPRSHIDDEYANATEKDPKILLTTSRNPSAPLTQFVKELKFVFPNAQRMNRGGQV 120

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           ISEIIETCRAH+FTDVVLVHEHRGVPDG+II HLPFGPTAYFGLLNVVTRHDIKD+K+IG
Sbjct: 121 ISEIIETCRAHDFTDVVLVHEHRGVPDGIIISHLPFGPTAYFGLLNVVTRHDIKDKKAIG 180

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
            M EAYPHLIL+NF +KLGERTANILKHLFPVPK DTKRIITFANQSDY+SFRHH+YEK+
Sbjct: 181 KMSEAYPHLILNNFSTKLGERTANILKHLFPVPKPDTKRIITFANQSDYVSFRHHVYEKR 240

Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
           GGPKS+ELKE+GPRFELRLYQIKLGT+DQSEAQIEWVIRPYMNT+KKRKFLGD
Sbjct: 241 GGPKSIELKEVGPRFELRLYQIKLGTMDQSEAQIEWVIRPYMNTTKKRKFLGD 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075818|ref|XP_002304782.1| predicted protein [Populus trichocarpa] gi|222842214|gb|EEE79761.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/293 (91%), Positives = 287/293 (97%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEAL EGKPIPTELRNEEAALRQEIDLE
Sbjct: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALAEGKPIPTELRNEEAALRQEIDLE 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
           DENTAIPRSHIDDEYA ATERDPKILLTTSRDPSAPLTQFVKELKFVFPNA+R+NRGGQV
Sbjct: 61  DENTAIPRSHIDDEYAKATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAERINRGGQV 120

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           ISEIIE+CRAH++TDV+LVHEHRGVPDGL+ICHLPFGPTAYF LLNVVTRHDIKD+K+IG
Sbjct: 121 ISEIIESCRAHDYTDVILVHEHRGVPDGLVICHLPFGPTAYFELLNVVTRHDIKDKKAIG 180

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
           TMPEA+PHLIL+NFKSKLGERTANILKHLFP+PK DTKRIITFANQSDYISFRHHIYEK 
Sbjct: 181 TMPEAHPHLILNNFKSKLGERTANILKHLFPMPKPDTKRIITFANQSDYISFRHHIYEKH 240

Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
           GGPKS+ELKEIGPRFE+RLYQIKLGTVDQ+EAQ EWV+RPYMNT+KKRKF+GD
Sbjct: 241 GGPKSVELKEIGPRFEMRLYQIKLGTVDQTEAQNEWVLRPYMNTTKKRKFIGD 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053310|ref|XP_002297757.1| predicted protein [Populus trichocarpa] gi|222845015|gb|EEE82562.1| predicted protein [Populus trichocarpa]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/293 (91%), Positives = 286/293 (97%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEAL EGKPIPTELRNEEAALRQEIDLE
Sbjct: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALAEGKPIPTELRNEEAALRQEIDLE 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
           DENTAIPRSHIDDEYA ATERDPKILLTTSRDPSAPLTQFVKELKFVFPNA+R+NRGGQV
Sbjct: 61  DENTAIPRSHIDDEYAKATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAERINRGGQV 120

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           ISEIIE+CRAH++TDV+LVHEHRGVPDGL+ICHLPFGPTAYF LLNVVTRHDIKD+K+IG
Sbjct: 121 ISEIIESCRAHDYTDVILVHEHRGVPDGLVICHLPFGPTAYFELLNVVTRHDIKDKKAIG 180

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
           TMPEA PHLIL+NFKSKLGERTANILKHLFP+PK DTKRIITFANQSDYISFRHHIYEK 
Sbjct: 181 TMPEAPPHLILNNFKSKLGERTANILKHLFPMPKPDTKRIITFANQSDYISFRHHIYEKH 240

Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
           GGPKS+ELKEIGPRFE+RLYQIKLGTVDQ+EAQ EWV+RPYMNT+KKRKF+GD
Sbjct: 241 GGPKSVELKEIGPRFEMRLYQIKLGTVDQTEAQNEWVLRPYMNTTKKRKFIGD 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483045|gb|ABK93432.1| unknown [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/293 (91%), Positives = 287/293 (97%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRR+IRLRREYLYRKSLEGKERLLYEKKRKIKEAL EGKPIPTELRNEEAALRQEIDLE
Sbjct: 1   MLRRDIRLRREYLYRKSLEGKERLLYEKKRKIKEALAEGKPIPTELRNEEAALRQEIDLE 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
           DENTAIPRSHIDDEYA ATERDPKILLTTSRDPSAPLTQFVKELKFVFPNA+R+NRGGQV
Sbjct: 61  DENTAIPRSHIDDEYAKATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAERINRGGQV 120

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           ISEIIE+CRAH++TDV+LVHEHRGVPDGL+ICH+PFGPTAYF LLNVVTRHDIKD+K+IG
Sbjct: 121 ISEIIESCRAHDYTDVILVHEHRGVPDGLVICHIPFGPTAYFELLNVVTRHDIKDKKAIG 180

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
           TMPEA+PHLIL+NFKSKLGERTANILKHLFP+PK DTKRIITFANQSDYISFRHHIYEK 
Sbjct: 181 TMPEAHPHLILNNFKSKLGERTANILKHLFPMPKPDTKRIITFANQSDYISFRHHIYEKH 240

Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
           GGPKS+ELKEIGPRFE+RLYQIKLGTVDQ+EAQ EWV+RPYMNT+KKRKF+GD
Sbjct: 241 GGPKSVELKEIGPRFEMRLYQIKLGTVDQTEAQNEWVLRPYMNTTKKRKFIGD 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544049|ref|XP_002513087.1| U3 small nucleolar ribonucleoprotein protein imp4, putative [Ricinus communis] gi|223548098|gb|EEF49590.1| U3 small nucleolar ribonucleoprotein protein imp4, putative [Ricinus communis]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/293 (89%), Positives = 285/293 (97%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRRNIRLRR+YLYRKSLEGKERLLYEKKRKIKEAL EGKPIPTELRNEEAALRQEIDLE
Sbjct: 1   MLRRNIRLRRDYLYRKSLEGKERLLYEKKRKIKEALAEGKPIPTELRNEEAALRQEIDLE 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
           DENTA+P+SHIDDEYANATE+DPKILLTTSR+PSAPL QFVKELKFVFPNA+R+NRGGQV
Sbjct: 61  DENTAVPKSHIDDEYANATEKDPKILLTTSRNPSAPLIQFVKELKFVFPNAERINRGGQV 120

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           ISEIIE+CRAH++TDV+LVHEHRGVPDGLII HLPFGPTAYFGLLNVVTRHDIKD+K+IG
Sbjct: 121 ISEIIESCRAHDYTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDIKDKKAIG 180

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
           TMPEAYPHLIL+NFK+KLGERTAN+LKHLFP+PK D KRIITFANQSDYISFRHHIYEK 
Sbjct: 181 TMPEAYPHLILNNFKTKLGERTANVLKHLFPMPKIDAKRIITFANQSDYISFRHHIYEKH 240

Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
           GGPKS+ELKEIGPRFE+RLYQIKLGT+DQ+EA  EWVIRPYMNTSKKRKF+GD
Sbjct: 241 GGPKSVELKEIGPRFEMRLYQIKLGTMDQNEAHNEWVIRPYMNTSKKRKFIGD 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814284|ref|NP_001242782.1| uncharacterized protein LOC100803810 [Glycine max] gi|255639830|gb|ACU20208.1| unknown [Glycine max]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 262/293 (89%), Positives = 282/293 (96%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRRNIRLRREYLYRKSLEGKERLLYEKKRKI+EALQEGKPIPTELRNEEAALR+EIDLE
Sbjct: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALQEGKPIPTELRNEEAALRREIDLE 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
           DENTA+PR+HIDDEYA A E+DPKILLTTSRDPSAPL QFVKEL F FPNAQRMNRGGQV
Sbjct: 61  DENTAVPRTHIDDEYAYAAEKDPKILLTTSRDPSAPLQQFVKELSFEFPNAQRMNRGGQV 120

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           ISEIIE+CRAH++TDVVLVHEHRGVPDGLI+CHLPFGPTAYFGLLNVVTRH+IK +K+IG
Sbjct: 121 ISEIIESCRAHDYTDVVLVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIKGKKAIG 180

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
           TMPEAYPHLILDNF +KLG+RTANILKHLFPVPK DTKRI+TF+NQSDYISFRHHIYEK 
Sbjct: 181 TMPEAYPHLILDNFSTKLGDRTANILKHLFPVPKPDTKRIVTFSNQSDYISFRHHIYEKH 240

Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
           GGPKS+ELKEIGPRFELRLYQIKLGTVDQ+EAQIEW IRPYMNT+KKRKFL +
Sbjct: 241 GGPKSIELKEIGPRFELRLYQIKLGTVDQAEAQIEWAIRPYMNTTKKRKFLSN 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808124|ref|NP_001242221.1| uncharacterized protein LOC100814677 [Glycine max] gi|255634440|gb|ACU17585.1| unknown [Glycine max]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 258/293 (88%), Positives = 281/293 (95%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRRNIRLRREYLYRKSLEGKERLLYEKKRKI+EALQEGKPIPTELRNEEAALR+ IDLE
Sbjct: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALQEGKPIPTELRNEEAALRRAIDLE 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
           DENTA+PR+HIDDEYA A E+DPKILLTTSRDPSAPL QFVKEL FVFPNAQRMNRGGQV
Sbjct: 61  DENTAVPRTHIDDEYAYAAEKDPKILLTTSRDPSAPLQQFVKELSFVFPNAQRMNRGGQV 120

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           ISEIIE+CRAH++TDVVLVHEHRGVPDGLI+CHLPFGPTAYFGLLNVVTRH+IKD+K+IG
Sbjct: 121 ISEIIESCRAHDYTDVVLVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIKDKKAIG 180

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
           T+PEAYPHLIL+NF +KLG+RTANI+KHLFPVPK DTKRI+ FANQS YISFRHHIYEK 
Sbjct: 181 TIPEAYPHLILNNFSTKLGDRTANIMKHLFPVPKLDTKRIVMFANQSGYISFRHHIYEKN 240

Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
           G PKS+ELKEIGPRFELRLYQIKLGTVDQ+EAQIEW+IRPYMNT+KKRKFL +
Sbjct: 241 GSPKSIELKEIGPRFELRLYQIKLGTVDQAEAQIEWIIRPYMNTTKKRKFLSN 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451998|ref|XP_004143747.1| PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Cucumis sativus]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/292 (88%), Positives = 279/292 (95%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRRNIRLRREYLYRKSLEGKERLLYEKKRKI+EAL+EGKP PTELRNEEAALR+EI+LE
Sbjct: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELE 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
           DE TA+PR+HIDDEYANA+E DPKIL+TTSRDPSAPLTQF KELK VFPNAQRMNRGGQV
Sbjct: 61  DELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQV 120

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           ISEIIETCRAHEFTDV+LVHEHRGVPDGLII HLPFGPTAYFGLLNVVTRH+I+D+K++G
Sbjct: 121 ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKTMG 180

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
           TMPEAYPH+IL+NF +KLGERTANILKHLFPVPK DTKR++TFANQSDYISFRHHIYEK 
Sbjct: 181 TMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKH 240

Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLG 292
           GG KS+ELKEIGPRFELRLYQIKLGTVDQ+EAQ EWVIRPYM T+KKR FLG
Sbjct: 241 GGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456827|ref|XP_003598694.1| U3 small nucleolar ribonucleoprotein IMP4 [Medicago truncatula] gi|355487742|gb|AES68945.1| U3 small nucleolar ribonucleoprotein IMP4 [Medicago truncatula] gi|388501230|gb|AFK38681.1| unknown [Medicago truncatula]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 251/291 (86%), Positives = 279/291 (95%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRRN RLRREY+YRKSLEGKER+ YE KRKI+EAL+EGKPIPTELRNEEAALR+EIDLE
Sbjct: 1   MLRRNQRLRREYIYRKSLEGKERIHYENKRKIREALREGKPIPTELRNEEAALRREIDLE 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
           DENTA+PRSHIDDEYA A E+DPKILLTTSRDPSAPL QFVKEL  VFPNA+RMNRGGQV
Sbjct: 61  DENTAVPRSHIDDEYAFAAEKDPKILLTTSRDPSAPLKQFVKELSIVFPNAERMNRGGQV 120

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           ISEII++CR+H++TDV+LVHEHRGVPDGLI+CHLPFGPTAYFGLLNVVTRH+I+DRK++G
Sbjct: 121 ISEIIDSCRSHDYTDVILVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIRDRKAVG 180

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
           TMPEAYPH+ILDNF++KLGERTANILKHLFPVPK DTKRI+TFAN+SDYISFRHHIYEKQ
Sbjct: 181 TMPEAYPHIILDNFETKLGERTANILKHLFPVPKPDTKRIVTFANKSDYISFRHHIYEKQ 240

Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
            GPKS+ELKEIGPRFELRLYQIKLGTVDQ+EAQ EWVIRPYMNT++KR FL
Sbjct: 241 AGPKSVELKEIGPRFELRLYQIKLGTVDQAEAQTEWVIRPYMNTTRKRNFL 291

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837007|ref|XP_002886385.1| hypothetical protein ARALYDRAFT_893060 [Arabidopsis lyrata subsp. lyrata] gi|297332226|gb|EFH62644.1| hypothetical protein ARALYDRAFT_893060 [Arabidopsis lyrata subsp. lyrata]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/294 (81%), Positives = 277/294 (94%), Gaps = 1/294 (0%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
           MLRRN+RLR+EYLYRK+LEG ERL+YEKKRKI+EALQEG+PIPTELRNEEA LRQEIDLE
Sbjct: 1   MLRRNVRLRKEYLYRKNLEGDERLVYEKKRKIREALQEGRPIPTELRNEEARLRQEIDLE 60

Query: 61  DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
           D+NTA+PRSHIDDEYANATE DPKILLTTSR+PSAPL +F KELKFVFPN+QR+NRGGQV
Sbjct: 61  DQNTAVPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRGGQV 120

Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
           ISEIIET R+H+FTDV+LVHEHRGVPDGLII HLPFGPTAYFGLLNVVTRHDI D+K+IG
Sbjct: 121 ISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKAIG 180

Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEK- 239
            MPE YPHLI +NF +++G+R ANILKH+FP PK D +RI+TFANQSDYISFR+H+Y+K 
Sbjct: 181 KMPEQYPHLIFNNFTTQMGQRVANILKHIFPAPKLDARRIVTFANQSDYISFRNHVYDKG 240

Query: 240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
           +GGPKS+ELKEIGPRFELRLYQ+KLGTV+Q+EA+IEWVIRPYMNT+KKR+F+G+
Sbjct: 241 EGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTAKKRQFIGE 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2026689	294	IMP4 "AT1G63780" [Arabidopsis	1.0	0.996	0.795	9.3e-130
DICTYBASE|DDB_G0302418	286	imp4 "U3 small nucleolar ribon	0.972	0.996	0.602	6.3e-92
ZFIN|ZDB-GENE-040718-474	291	imp4 "IMP4, U3 small nucleolar	0.979	0.986	0.568	4.6e-89
MGI|MGI:106572	291	Imp4 "IMP4, U3 small nucleolar	0.979	0.986	0.568	1.3e-86
RGD|1308463	291	Imp4 "IMP4, U3 small nucleolar	0.979	0.986	0.568	1.3e-86
UNIPROTKB|Q0VD01	291	IMP4 "U3 small nucleolar ribon	0.979	0.986	0.561	6.9e-86
UNIPROTKB|Q96G21	291	IMP4 "U3 small nucleolar ribon	0.979	0.986	0.561	8.9e-86
WB|WBGene00014083	292	ZK795.3 [Caenorhabditis elegan	0.962	0.965	0.520	4.3e-77
POMBASE|SPAC19A8.07c	289	SPAC19A8.07c "U3 snoRNP-associ	0.972	0.986	0.488	1.7e-73
CGD|CAL0000877	283	IMP4 [Candida albicans (taxid:	0.959	0.992	0.481	6.1e-71

TAIR|locus:2026689 IMP4 "AT1G63780" [Arabidopsis thaliana (taxid:3702)]

 Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
 Identities = 234/294 (79%), Positives = 270/294 (91%)

Query:     1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
             M RR +RL++EY+YRKSLEG ER +YE+KR I+EALQEGKPIPTELRN EA LRQEIDLE
Sbjct:     1 MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEAKLRQEIDLE 60

Query:    61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
             D+NTA+PRSHIDDEYANATE DPKILLTTSR+PSAPL +F KELKFVFPN+QR+NRG QV
Sbjct:    61 DQNTAVPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQV 120

Query:   121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
             ISEIIET R+H+FTDV+LVHEHRGVPDGLII HLPFGPTAYFGLLNVVTRHDI D+KSIG
Sbjct:   121 ISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSIG 180

Query:   181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEK- 239
              MPE YPHLI +NF +++G+R  NILKH+FP PK D KRI+TF+NQSDYISFR+H+Y+K 
Sbjct:   181 KMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAKRIVTFSNQSDYISFRNHVYDKG 240

Query:   240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
             +GGPKS+ELKEIGPRFELRLYQ+KLGTV+Q+EA+IEWVIRPYMNTSKKRKF+G+
Sbjct:   241 EGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFIGE 294

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005730 "nucleolus" evidence=TAS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=TAS

GO:0006364 "rRNA processing" evidence=RCA;TAS

GO:0015030 "Cajal body" evidence=TAS

GO:0016363 "nuclear matrix" evidence=IDA

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

DICTYBASE|DDB_G0302418 imp4 "U3 small nucleolar ribonucleoprotein protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 176/292 (60%), Positives = 228/292 (78%)

Query:     1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
             MLRRN RLR+EYLYRK+LEG ++  YEKKR+IK+AL EGKPIPTEL + E   R E+ L+
Sbjct:     1 MLRRNARLRQEYLYRKNLEGADKEDYEKKRRIKKALDEGKPIPTELVDFEFKHRDEMKLD 60

Query:    61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
               +   P+S IDDEYA A  +DPK+L+TTSR+PS+ L QF KEL+ +FPN+Q+MNRG  V
Sbjct:    61 KLDGNRPKS-IDDEYARAGIQDPKVLVTTSREPSSRLIQFTKELRMLFPNSQKMNRGAHV 119

Query:   121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
             + E+++ CRA++ TD+V+ HEHRG P GL+I HLP+GPTAYF + N V  HDI +     
Sbjct:   120 VKELVDACRANDVTDLVIAHEHRGEPVGLVISHLPYGPTAYFEIKNCVMIHDIDE----A 175

Query:   181 TMPE-AYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEK 239
             T P  A+PHLI  NF + LGERT NILK+LFPVPK D++R++TF+N +D+ISFRHHIYEK
Sbjct:   176 TPPSLAFPHLIFHNFTTPLGERTENILKYLFPVPKDDSRRVVTFSNDNDFISFRHHIYEK 235

Query:   240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
              G  K++ LKEIGPRFEL+LY+I+LGT+DQ EA +EWV +PYMN++K R FL
Sbjct:   236 DGY-KNVILKEIGPRFELKLYKIQLGTLDQDEADLEWVYKPYMNSTKNRLFL 286

GO:0034457 "Mpp10 complex" evidence=ISS

GO:0030515 "snoRNA binding" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-040718-474 imp4 "IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 166/292 (56%), Positives = 217/292 (74%)

Query:     1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
             MLRR +RLR+EYLYRK+ E + R + EKK+K+K AL E + +PTE+R E   +++ ++ +
Sbjct:     1 MLRREVRLRKEYLYRKAQEDRLRTIEEKKQKLKSALDENRLLPTEVRKEALEVQKLLEFD 60

Query:    61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
             DE      SH+DDEY  A   DPKI++TTSRDPS+ L  F KE+K +FP AQRMNRG   
Sbjct:    61 DEGGEGVSSHMDDEYKWAGVEDPKIMVTTSRDPSSRLKMFAKEMKLMFPGAQRMNRGNHE 120

Query:   121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
             +  ++  C+++  TD+V+VHE RG PDGL++CHLPFGPTAYF + NVV RHD+ D   IG
Sbjct:   121 VKTLVHACKSNNVTDLVIVHETRGQPDGLVVCHLPFGPTAYFTMYNVVMRHDVPD---IG 177

Query:   181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
             TM EAYPHLI  NF S+LG R +NILK+LFPVPK D++R+ITFAN  DYISFRHH Y+K 
Sbjct:   178 TMSEAYPHLIFHNFTSRLGRRVSNILKYLFPVPKEDSRRVITFANTDDYISFRHHTYKKT 237

Query:   241 GGPKSLELKEIGPRFELRLYQIKLGTVD-QSEAQIEWVIRPYMNTSKKRKFL 291
                K++EL E+GPRFE++LY IKLGT++ +S A +EW   PY  T+KKRKFL
Sbjct:   238 DH-KNVELTEVGPRFEMKLYMIKLGTLENESTADVEWRHHPYTRTAKKRKFL 288

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:106572 Imp4 "IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 166/292 (56%), Positives = 214/292 (73%)

Query:     1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
             MLRR  RLRREYLYRK+ E  +R + EKK ++K AL+E + IPTELR E  AL+  ++ +
Sbjct:     1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFD 60

Query:    61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
             D       SH+DDEY  A   DPK+++TTSRDPS+ L  F KELK VFP AQRMNRG   
Sbjct:    61 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query:   121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
             +  ++  C+A+  TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +G
Sbjct:   121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177

Query:   181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
             TM EA PHLI   F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K 
Sbjct:   178 TMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT 237

Query:   241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
                +++EL E+GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct:   238 DH-RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288

GO:0003723 "RNA binding" evidence=ISA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;ISA

GO:0006364 "rRNA processing" evidence=TAS

GO:0030519 "snoRNP binding" evidence=ISA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

RGD|1308463 Imp4 "IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 166/292 (56%), Positives = 214/292 (73%)

Query:     1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
             MLRR  RLRREYLYRK+ E  +R + EKK ++K AL+E + IPTELR E  AL+  ++ +
Sbjct:     1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFD 60

Query:    61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
             D       SH+DDEY  A   DPK+++TTSRDPS+ L  F KELK VFP AQRMNRG   
Sbjct:    61 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query:   121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
             +  ++  C+A+  TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +G
Sbjct:   121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177

Query:   181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
             TM EA PHLI   F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K 
Sbjct:   178 TMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT 237

Query:   241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
                +++EL E+GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct:   238 DH-RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q0VD01 IMP4 "U3 small nucleolar ribonucleoprotein protein IMP4" [Bos taurus (taxid:9913)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 164/292 (56%), Positives = 213/292 (72%)

Query:     1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
             MLRR  RLRREYLYRK+ E  ER   E+K K++ AL+E + IPTELR E  AL+  ++ +
Sbjct:     1 MLRREARLRREYLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFD 60

Query:    61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
             D       +H+DDEY  A   DPK+++TTSRDPS+ L  F KELK VFP AQRMNRG   
Sbjct:    61 DAGGEGVTNHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query:   121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
             +  ++  C+A+  TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +G
Sbjct:   121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177

Query:   181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
             T  EA PHLI+  F S+LG+R ++IL++LFPVPK D++R+ITFANQ DYISFRHH+Y+K 
Sbjct:   178 TASEAKPHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKKT 237

Query:   241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
                +++EL E+GPRFEL+LY I+LGT++Q + A +EW   PY NT+ KR FL
Sbjct:   238 NH-RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288

GO:0005730 "nucleolus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|Q96G21 IMP4 "U3 small nucleolar ribonucleoprotein protein IMP4" [Homo sapiens (taxid:9606)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 164/292 (56%), Positives = 213/292 (72%)

Query:     1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
             MLRR  RLRREYLYRK+ E  +R   E+K +++ AL+E + IPTELR E  AL+  ++ +
Sbjct:     1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 60

Query:    61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
             D       SH+DDEY  A   DPK+++TTSRDPS+ L  F KELK VFP AQRMNRG   
Sbjct:    61 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query:   121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
             +  ++  C+A+  TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +G
Sbjct:   121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177

Query:   181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
             TM EA PHLI   F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K 
Sbjct:   178 TMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT 237

Query:   241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
                +++EL E+GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct:   238 DH-RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

WB|WBGene00014083 ZK795.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/292 (52%), Positives = 203/292 (69%)

Query:     1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
             M+RR  RLRRE+++RKSLE K++ L EK+ KI+ AL+    I   LR +   L +  D  
Sbjct:     1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDWG 60

Query:    61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
              +     +   D EY  A  +DPKI++TTSRDPS+ L  F KE+K +FPNAQR+NRG   
Sbjct:    61 GQ-----QYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYD 115

Query:   121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
             + ++++  +A + TD+++  E RG PDG+++CHLPFGPTA+F + NVV RHDI +    G
Sbjct:   116 VKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPN---CG 172

Query:   181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
             TM E YPHLI DN  SKLG R   ILKHLFPVPK D+KRIITF+N  DYISFRHH+Y+ +
Sbjct:   173 TMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVYKTE 232

Query:   241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
                + +EL E GPRFEL+ YQIKLGT++  + A+ EWV+R Y NT++KR FL
Sbjct:   233 NDGE-VELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

POMBASE|SPAC19A8.07c SPAC19A8.07c "U3 snoRNP-associated protein Imp4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 145/297 (48%), Positives = 206/297 (69%)

Query:     1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
             MLRR +R RR+++Y+++ E +E  L EK+R +++AL+  K +  +L+ E++ L+++    
Sbjct:     1 MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQ-EDSQLQKDYKY- 58

Query:    61 DENTAIPR---SHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 117
             DE+ A      +++DDEY    ER+PK+L+TTSR+PS+ L QF KE++ + PN+ R+NRG
Sbjct:    59 DESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRG 118

Query:   118 GQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRK 177
               V+  ++E  RA++ TD+V++HEHRG+PDGL+I HLP+GPT  F L NVV RHDI +  
Sbjct:   119 NIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNT- 177

Query:   178 SIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHI 236
               GTM EAYPHLI +N  SKLG+R    L  LFP  PK  T R++TFAN  DYISFRHHI
Sbjct:   178 --GTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHI 235

Query:   237 YEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
             Y K G PK + L E GPRFE++L++I LGTVD  +A +EW ++PY     KR  L +
Sbjct:   236 YAKTG-PKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPYQR--HKRDVLAE 289

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

CGD|CAL0000877 IMP4 [Candida albicans (taxid:5476)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 141/293 (48%), Positives = 198/293 (67%)

Query:     1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
             M+R+  R RREYLYRK+L+ +E  L EK++++K AL  GK +  EL  +E   R  I   
Sbjct:     1 MIRKQARERREYLYRKALQLQESSLTEKRQQLKAALASGKSLSKELAEDEKLQRDFI--Y 58

Query:    61 DENTAIPRSHIDDEYANATE-RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQ 119
             DE+  I    IDDEY+  +   DPK+++TTSRDPS  L QF KE+K +FPN+ ++NRG  
Sbjct:    59 DESEQI---EIDDEYSRLSGISDPKVVITTSRDPSVKLLQFSKEIKLMFPNSLKLNRGNY 115

Query:   120 VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSI 179
             +IS+++ TC   + +D++L+HEHRGVP  L + H P GPTA F L NV  RHD+ +   +
Sbjct:   116 IISDLVSTCNRVQVSDMILLHEHRGVPSSLTVSHFPHGPTAIFTLHNVKLRHDLPN---L 172

Query:   180 GTMPEAYPHLILDNFKSKLGERTANILKHLFPVP-KADTKRIITFANQSDYISFRHHIYE 238
             G + E+YPHLI +NF+S LG+R   IL+HLFP   K D+ R+ITF N  DYIS RHH+Y 
Sbjct:   173 GNVSESYPHLIFENFQSDLGKRVVKILQHLFPPGVKKDSSRVITFVNNDDYISVRHHVYV 232

Query:   239 KQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
             K     S+EL EIGPRFE+RLY+I+LG  D  +A +EW +R ++ T+ ++ +L
Sbjct:   233 KT--KDSVELSEIGPRFEMRLYEIRLGLPDNKDADVEWQMRRFIRTANRKNYL 283

GO:0032040 "small-subunit processome" evidence=IEA

GO:0034457 "Mpp10 complex" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0042134 "rRNA primary transcript binding" evidence=IEA

GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0VD01	IMP4_BOVIN	No assigned EC number	0.5516	0.9419	0.9484	yes	no
P53941	IMP4_YEAST	No assigned EC number	0.4729	0.9726	0.9827	yes	no
Q96G21	IMP4_HUMAN	No assigned EC number	0.5516	0.9419	0.9484	yes	no
Q6C804	IMP4_YARLI	No assigned EC number	0.4778	0.9590	0.9929	yes	no
Q8VHZ7	IMP4_MOUSE	No assigned EC number	0.5587	0.9419	0.9484	yes	no
Q5R947	IMP4_PONAB	No assigned EC number	0.5516	0.9419	0.9484	yes	no
Q6BYD9	IMP4_DEBHA	No assigned EC number	0.4557	0.9624	0.9929	yes	no
O13823	IMP4_SCHPO	No assigned EC number	0.4982	0.9385	0.9515	yes	no
O62518	YHPK_CAEEL	No assigned EC number	0.5187	0.9658	0.9691	yes	no
Q755T8	IMP4_ASHGO	No assigned EC number	0.4641	0.9590	0.9929	yes	no
Q6FNN7	IMP4_CANGA	No assigned EC number	0.4581	0.9556	0.9722	yes	no
Q5PQR5	IMP4_RAT	No assigned EC number	0.5587	0.9419	0.9484	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	8e-58
pfam04427	176	pfam04427, Brix, Brix domain	5e-55
COG2136	191	COG2136, IMP4, Predicted exosome subunit/U3 small	1e-42
PRK00933	165	PRK00933, PRK00933, ribosomal biogenesis protein;	2e-04

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  182 bits (465), Expect = 8e-58
 Identities = 69/180 (38%), Positives = 103/180 (57%), Gaps = 8/180 (4%)

Query: 86  LLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEH--R 143
           L+TTSR PS    Q  K+L+ +FP + ++NRG   ++E++E       TD+++V E   +
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSK 60

Query: 144 GVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTA 203
           G P  L I  LP GPT  F +LNV  R ++K  K+   +  + P LI +NF ++LG+   
Sbjct: 61  GRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIK 120

Query: 204 NILKHLFPVPKADTK------RIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFEL 257
            + + LFP P    K      R++TF+NQ DYI FRH+  +       +EL+EIGPRF L
Sbjct: 121 ELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRIKFGKKKPRVELQEIGPRFTL 180

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  175 bits (447), Expect = 5e-55
 Identities = 67/184 (36%), Positives = 100/184 (54%), Gaps = 16/184 (8%)

Query: 87  LTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVP 146
           +TTSR PS  L Q  K+L+ +FPNA+++NRG + + +++E       T +++  EH+  P
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLFPNAKKLNRGKKKLKDLLEFAGEKGDTSLLVFGEHKK-P 59

Query: 147 DGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSK--LGERTAN 204
             L I  LP GPT  F + NV    DIK +        + P L+ + F       +    
Sbjct: 60  LNLTIGRLPNGPTLEFRISNVKLLKDIKGKGK--GNKGSRPLLVFNGFFFTRLGLKLIKE 117

Query: 205 ILKHLFPVPKADT------KRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELR 258
           +L+ LFP P           R+ITF+NQ D I FRH+ Y+K+     +EL+EIGPRF L+
Sbjct: 118 LLQDLFPGPNVHKIPLKGGDRVITFSNQRDTIFFRHYRYKKK-----VELQEIGPRFTLK 172

Query: 259 LYQI 262
           L +I
Sbjct: 173 LRRI 176

Length = 176

>gnl|CDD|225047 COG2136, IMP4, Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

 Score =  144 bits (365), Expect = 1e-42
 Identities = 67/194 (34%), Positives = 94/194 (48%), Gaps = 11/194 (5%)

Query: 82  DPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHE 141
            PK+LLTTSR PS     F K+L  V PNA  + RG + I E+ E   A   TD+++V E
Sbjct: 1   MPKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGE 60

Query: 142 HRGVPDGLIICHL-PFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLG- 199
            RG P  L    L P G T  F L  V  R +I        +    P LI +NF + LG 
Sbjct: 61  RRGNPARLTFYDLEPEGLTFSFKLSGVKLRREIPVLGPKSRLH--GPELIFNNFTTLLGF 118

Query: 200 ERTANILKHLFPV-----PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPR 254
            + A     L  V     P  + + + T AN+ D+ S R H    +     + L+E+GPR
Sbjct: 119 LKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRHRRVFEE--DGIGLEEVGPR 176

Query: 255 FELRLYQIKLGTVD 268
             LRL++++ G  +
Sbjct: 177 LTLRLWRMEDGRGE 190

Length = 191

>gnl|CDD|234867 PRK00933, PRK00933, ribosomal biogenesis protein; Validated

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 86  LLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGV 145
           ++TTSR PS      VK+L     N + +NRG   + E++E C A     ++++ E++G 
Sbjct: 2   IITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEAR---YLLIIGEYKGN 57

Query: 146 P 146
           P
Sbjct: 58  P 58

Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	100.0
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	100.0
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
PRK03972	208	ribosomal biogenesis protein; Validated	99.97
PRK00933	165	ribosomal biogenesis protein; Validated	99.54
KOG3031	307	consensus Protein required for biogenesis of the r	99.46
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	98.28
PRK03972	208	ribosomal biogenesis protein; Validated	95.77

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=100.00  E-value=4.2e-95  Score=645.50  Aligned_cols=289  Identities=61%  Similarity=1.058  Sum_probs=282.3

Q ss_pred             CchhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCCccchhhHHHhhhhhccCccCCcCCCCccchHHhhcCC
Q 022723            1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATE   80 (293)
Q Consensus         1 m~r~~~r~rr~~l~~k~~~~k~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddE~~~~~~   80 (293)
                      |+||++|+||||||+|++|+++++.+|+|+++++||++||+||+++++++..+.+++.++|+.+++...+.||||+++|.
T Consensus         1 MlRR~~R~RREylyrK~~E~~~k~~~ekk~~lr~ALe~nk~ip~elrkda~~l~d~~~~ed~~~~~~~~~vddEy~~ag~   80 (290)
T KOG2781|consen    1 MLRRQARERREYLYRKALEEQDKSLQEKKRRLREALEENKKIPKELRKDALLLKDEIYYEDEGGEADDSHVDDEYRWAGE   80 (290)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHhHHHhhhhhhccccccccccccccHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999998777777899999999999


Q ss_pred             CCCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeE
Q 022723           81 RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTA  160 (293)
Q Consensus        81 ~~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~  160 (293)
                      .+|||+|||||+||+++.+|+|+|+.||||++.+|||++.+.++++.|..+|+|++|||||++|.|++|+|||||.|||+
T Consensus        81 ~dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPfGPTa  160 (290)
T KOG2781|consen   81 EDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQRLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPFGPTA  160 (290)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHhheEeccChhhhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcCCCCCCCCCeEEEEEecCCeEEEEEeeeeec
Q 022723          161 YFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ  240 (293)
Q Consensus       161 ~F~I~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~p~~~~rRVv~F~n~~d~I~fRhy~y~~~  240 (293)
                      +|+|.||++++||++.   |++++.+||||||||+|++|++++.+|++|||.|+.+++|||||.|++|+|.||||.|...
T Consensus       161 ~Fsl~nvVmRhdip~~---G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP~pk~ds~Rvvtf~N~~DyIsFRhhvy~~~  237 (290)
T KOG2781|consen  161 FFSLHNVVMRHDIPDI---GTMSEQKPHLIFDNFTTKLGKRVKTILKHLFPVPKDDSKRVVTFANRNDYISFRHHVYKKT  237 (290)
T ss_pred             Eeeeeeeeeccccccc---ccccccCceEEeccccchHHHHHHHHHHHhCCCCcCCcccEEEEecCCceEEEEEEEEecC
Confidence            9999999999999998   9999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCcceeeeecceeEEEEEEeecccCCCCCCcEEEEeCCCCCccccccccCC
Q 022723          241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD  293 (293)
Q Consensus       241 ~~~~~v~L~EiGPRftLkL~kI~~Gt~~~~~g~~ew~~~~~~~t~r~r~~l~~  293 (293)
                      + .+.|.|.|+||||+|+||.|.+||++.+.|++||+++|||||+|||.+|+.
T Consensus       238 ~-~k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR~~l~~  289 (290)
T KOG2781|consen  238 D-GKEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKRDFLSE  289 (290)
T ss_pred             C-CceEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhhhhhcc
Confidence            5 488999999999999999999999999999999999999999999999864

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=100.00  E-value=3.9e-73  Score=510.35  Aligned_cols=280  Identities=39%  Similarity=0.648  Sum_probs=253.9

Q ss_pred             HhHHHHHHHHHHHHHHHHhHHHHH-HHHHH-----HHHc---CCCCCccchhhHHHhhhhhccCccCCcCCCCccchHHh
Q 022723            6 IRLRREYLYRKSLEGKERLLYEKK-RKIKE-----ALQE---GKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYA   76 (293)
Q Consensus         6 ~r~rr~~l~~k~~~~k~~~~~~~~-~~~~~-----~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddE~~   76 (293)
                      ++..|+..|.+.+++|.+++.+.+ ++.++     ++++   .+.+|++|++  .+..|+++++++++|.+.+..||||+
T Consensus        11 n~~~~~~~~~~~k~~k~~~~~~~rk~k~~~~~~~~el~~~~~~~~vp~TIe~--~R~yDeT~v~~~deEl~~d~~~deF~   88 (302)
T KOG2780|consen   11 NKDKRQKSYMKNKHQKNLEKLKMRKEKAKEKRELPELGELRPQKNVPKTIES--TRVYDETIVEEEDEELQADLADDEFS   88 (302)
T ss_pred             ccccchHHHhhhHHHhhhHHHHHHHHHHHHhhhchhhhhccCccCCcchhhh--hhhccccccCCCcHHHhhhhhhhhhH
Confidence            345567788888888888764422 22211     2222   5778888866  88889999999888888899999999


Q ss_pred             h--cCCCCCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeC
Q 022723           77 N--ATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHL  154 (293)
Q Consensus        77 ~--~~~~~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~l  154 (293)
                      .  +....|||||||+.+|+.++..||.+|..|+|||....|++..++.++++|...++||++||+|+++.|++|.|+|+
T Consensus        89 ~~~~~~~spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihl  168 (302)
T KOG2780|consen   89 PYFRREFSPKVLITTSKNPKRTTYKFASELLDIIPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHL  168 (302)
T ss_pred             HHHhcccCccEEEEcCCCCcccHHHHHHHHHHhCCCceEEecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEec
Confidence            9  55566999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcCCC-CCCCCCeEEEEEecCCeEEEE
Q 022723          155 PFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFR  233 (293)
Q Consensus       155 P~GPT~~F~I~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~-p~~~~rRVv~F~n~~d~I~fR  233 (293)
                      |+|||++|+++||++.+||...   |.+++|.|+||+|||+|++|+.|++||++|||. |++.|||||+||||+||||||
T Consensus       169 P~GPT~~Fkls~~~~~kdi~k~---g~~t~h~PElIlNNFtTrlG~~v~r~f~sLfp~~p~f~gRrvvtFhnQrD~IfFR  245 (302)
T KOG2780|consen  169 PNGPTAYFKLSNVVLTKDIKKH---GRPTSHIPELILNNFTTRLGMTVGRLFASLFPHDPQFTGRRVVTFHNQRDYIFFR  245 (302)
T ss_pred             CCCCceEEEeecccchhhhhhc---CCcccccchhhhhcccchhhHHHHHHHHHhCCCCccccceeEEEEEecCceEEEE
Confidence            9999999999999999999998   899999999999999999999999999999999 889999999999999999999


Q ss_pred             EeeeeecCCCCcceeeeecceeEEEEEEeecccCCCCCCcEEEEeCCCCCcccccccc
Q 022723          234 HHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL  291 (293)
Q Consensus       234 hy~y~~~~~~~~v~L~EiGPRftLkL~kI~~Gt~~~~~g~~ew~~~~~~~t~r~r~~l  291 (293)
                      ||+|.|.+...+|.|+||||||||+|+++|+|+||.++|+++|++++ |+|+|++|||
T Consensus       246 hhRY~Fkee~~kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~~-~~tsrr~f~L  302 (302)
T KOG2780|consen  246 HHRYEFKEEEIKVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHKK-METSRRKFFL  302 (302)
T ss_pred             EEEEeecccccccchhhcCCceeeeehhhhhccccccceeeeeeecc-cccchhcccC
Confidence            99999976447899999999999999999999999999999999999 9999999997

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=2e-42  Score=303.26  Aligned_cols=173  Identities=38%  Similarity=0.640  Sum_probs=80.7

Q ss_pred             EEeCCCCChhHHHHHHHHHhcC-CCcEEeccCCc-cHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEEEE
Q 022723           87 LTTSRDPSAPLTQFVKELKFVF-PNAQRMNRGGQ-VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGL  164 (293)
Q Consensus        87 ITtSr~ps~r~r~f~kdL~~l~-Pns~~~~R~~~-~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F~I  164 (293)
                      ||||++||+++++|++||+.++ |||.+++|++. .+++++++|..++|+++++|++++++|++|||+++|+|||++|+|
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I   80 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSI   80 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEE
Confidence            7999999999999999999999 99999999888 999999999999999999999999999999999999999999999


Q ss_pred             eeeEeccccccccccCCCCCCCcEEEecCCCCch---hHHHHHHHHhcCCCCC------CCCCeEEEEEecCCe-EEEEE
Q 022723          165 LNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKL---GERTANILKHLFPVPK------ADTKRIITFANQSDY-ISFRH  234 (293)
Q Consensus       165 ~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~l---g~~i~~~l~~lFp~p~------~~~rRVv~F~n~~d~-I~fRh  234 (293)
                      .||++++|+++..  ....+++|+|||+||.++.   +.+++++|++|||.+.      ..++||++|++++|. |+|||
T Consensus        81 ~~~~~~~~~~~~~--~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~  158 (191)
T PF04427_consen   81 ENYKLMKDIKSSS--KRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRH  158 (191)
T ss_dssp             EEEE-HHHHT---------S---EEEEE----------------------------------------------------
T ss_pred             EeEEEhhHhcccc--cCCCCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999998652  2234778999999998766   9999999999999964      456999999999998 99999


Q ss_pred             eeeeecC--CC----CcceeeeecceeEEEEEEe
Q 022723          235 HIYEKQG--GP----KSLELKEIGPRFELRLYQI  262 (293)
Q Consensus       235 y~y~~~~--~~----~~v~L~EiGPRftLkL~kI  262 (293)
                      | +...+  ..    ..|+|+||||||||+|++|
T Consensus       159 Y-i~~~~~~~~~~~~~~v~L~EiGPr~~l~l~kI  191 (191)
T PF04427_consen  159 Y-IFKSGSKNPKKLLPRVELVEIGPRFTLKLRKI  191 (191)
T ss_dssp             ----------------------------------
T ss_pred             c-ccccccccccccccccccccccccccccccCC
Confidence            9 53222  01    3489999999999999987

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>smart00879 Brix Brix domain

Probab=100.00  E-value=5.7e-39  Score=277.61  Aligned_cols=172  Identities=40%  Similarity=0.659  Sum_probs=153.7

Q ss_pred             EEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEee--cCCCceEEEeeCCCCCeEEEE
Q 022723           86 LLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEH--RGVPDGLIICHLPFGPTAYFG  163 (293)
Q Consensus        86 lITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~--k~~p~~L~I~~lP~GPT~~F~  163 (293)
                      |||||++||+++++|++||+.++|++.+.+|+++.+.+++++|...+.++.+++.|.  +|+|++|||+++|+|||++|.
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~   80 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFK   80 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEE
Confidence            689999999999999999999999999999999999999999999866666666777  899999999999999999999


Q ss_pred             EeeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcCCCCCC------CCCeEEEEEecCCeEEEEEeee
Q 022723          164 LLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKA------DTKRIITFANQSDYISFRHHIY  237 (293)
Q Consensus       164 I~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~p~~------~~rRVv~F~n~~d~I~fRhy~y  237 (293)
                      +.+|.+.+|+......+....++|+|||+||.+..|++++.+|+.|||.+..      ..+|||+|++++|.|+||||.|
T Consensus        81 i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y~i  160 (180)
T smart00879       81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRI  160 (180)
T ss_pred             EECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEEEE
Confidence            9999999999874322335678999999999999999999999999999553      3699999999999999999999


Q ss_pred             eecCCCCcceeeeecceeEE
Q 022723          238 EKQGGPKSLELKEIGPRFEL  257 (293)
Q Consensus       238 ~~~~~~~~v~L~EiGPRftL  257 (293)
                      .+..+.++++|+||||||+|
T Consensus       161 ~~~~~~~~v~l~eiGPr~~l  180 (180)
T smart00879      161 KFGKKKPRVELQEIGPRFTL  180 (180)
T ss_pred             EccCCCCceEEEEecCCccC
Confidence            86223588999999999986

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=100.00  E-value=1.9e-37  Score=272.70  Aligned_cols=181  Identities=38%  Similarity=0.540  Sum_probs=172.4

Q ss_pred             CeEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeC-CCCCeEE
Q 022723           83 PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHL-PFGPTAY  161 (293)
Q Consensus        83 pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~l-P~GPT~~  161 (293)
                      ||+|||||++||+++++|++||..+|||+.+..||+.++.++.+.|...|+++++|++|++|+|..|.++|+ |.||++.
T Consensus         2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~~   81 (191)
T COG2136           2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTFS   81 (191)
T ss_pred             CcEEEEecCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             EEEeeeEeccccccccccCC-CCCCCcEEEecCCCCchh-HHHHHHHHhc----CCC-CCCCCCeEEEEEecCCeEEEEE
Q 022723          162 FGLLNVVTRHDIKDRKSIGT-MPEAYPHLILDNFKSKLG-ERTANILKHL----FPV-PKADTKRIITFANQSDYISFRH  234 (293)
Q Consensus       162 F~I~n~~l~~di~~~~~~g~-~s~~~P~LI~nnF~t~lg-~~i~~~l~~l----Fp~-p~~~~rRVv~F~n~~d~I~fRh  234 (293)
                      |+|+|+++++++...   ++ ...+.|++|+|||++.+| ..+.++|+.+    |++ +......|+++++++++++||+
T Consensus        82 f~l~~v~l~re~~~~---~~~~~~~~~~~I~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~v~~~~~~~~f~~~~~  158 (191)
T COG2136          82 FKLSGVKLRREIPVL---GPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRR  158 (191)
T ss_pred             EEEecceEEEecccc---CCcccCCCCceeeecccccccchhhHHHHHhhcccccccCcccceeeeeeccccceEEEEEe
Confidence            999999999999988   66 567899999999999998 8999999999    887 6677899999999999999999


Q ss_pred             eeeeecCCCCcceeeeecceeEEEEEEeecccCC
Q 022723          235 HIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVD  268 (293)
Q Consensus       235 y~y~~~~~~~~v~L~EiGPRftLkL~kI~~Gt~~  268 (293)
                      |.|.+.+  ..+.++|+||+|+|++..++.|+.+
T Consensus       159 ~~~~~~~--~~~~~~~vgp~~~~r~~~~~~g~~~  190 (191)
T COG2136         159 HRRVFEE--DGIGLEEVGPRLTLRLWRMEDGRGE  190 (191)
T ss_pred             eeeEeee--eeeeEEEeCceeeeehhhhhhcccc
Confidence            9999986  8899999999999999999999653

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.4e-37  Score=283.70  Aligned_cols=194  Identities=20%  Similarity=0.345  Sum_probs=169.9

Q ss_pred             CCCeEEEEeCCCCChhHHHHHHHHHhcC-CCcEEe--ccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCC
Q 022723           81 RDPKILLTTSRDPSAPLTQFVKELKFVF-PNAQRM--NRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG  157 (293)
Q Consensus        81 ~~pkvlITtSr~ps~r~r~f~kdL~~l~-Pns~~~--~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~G  157 (293)
                      ..|.++|.+++-.+..+++|..||+++| ||++..  .|+.|+|||++.+|+.+|+||++|++.+.. ..+|+|.++|.|
T Consensus        24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~-nlslki~R~PqG  102 (405)
T KOG2963|consen   24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQG  102 (405)
T ss_pred             cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccC-ceeEEEEecCCC
Confidence            4689999999999999999999999999 998754  468999999999999999999999999885 589999999999


Q ss_pred             CeEEEEEeeeEeccccccccccCC----CCCCCcEEEecCCCC---chhHHHHHHHHhcCCCCC------CCCCeEEEEE
Q 022723          158 PTAYFGLLNVVTRHDIKDRKSIGT----MPEAYPHLILDNFKS---KLGERTANILKHLFPVPK------ADTKRIITFA  224 (293)
Q Consensus       158 PT~~F~I~n~~l~~di~~~~~~g~----~s~~~P~LI~nnF~t---~lg~~i~~~l~~lFp~p~------~~~rRVv~F~  224 (293)
                      ||++|+|..|+|.+|+...+++..    ...++|+||+|||++   ++.+++..|||+|||..+      .+.+||+.++
T Consensus       103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllin  182 (405)
T KOG2963|consen  103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLIN  182 (405)
T ss_pred             CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEe
Confidence            999999999999999998876543    346899999999985   467899999999999954      4569999999


Q ss_pred             ec--CCeEEEEEeeeeec-------------------------------------C------------------------
Q 022723          225 NQ--SDYISFRHHIYEKQ-------------------------------------G------------------------  241 (293)
Q Consensus       225 n~--~d~I~fRhy~y~~~-------------------------------------~------------------------  241 (293)
                      +.  .+.|.||||.|...                                     |                        
T Consensus       183 yn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~~~  262 (405)
T KOG2963|consen  183 YNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDVKE  262 (405)
T ss_pred             cCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccchh
Confidence            74  56999999998630                                     0                        


Q ss_pred             ----------------CCCcceeeeecceeEEEEEEeecccCCCCCCcEEEEe
Q 022723          242 ----------------GPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVI  278 (293)
Q Consensus       242 ----------------~~~~v~L~EiGPRftLkL~kI~~Gt~~~~~g~~ew~~  278 (293)
                                      .++.|+|+|||||+||+|++|++|.++   |++.|..
T Consensus       263 eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~---GkVlyH~  312 (405)
T KOG2963|consen  263 EVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICE---GKVLYHE  312 (405)
T ss_pred             hhhccccccccCCCcccccceeeEeecccceEEEEEeeccccc---cceEEee
Confidence                            135699999999999999999999997   8887743

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.4e-37  Score=273.81  Aligned_cols=200  Identities=21%  Similarity=0.328  Sum_probs=180.8

Q ss_pred             CCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEecc--CCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCe
Q 022723           82 DPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNR--GGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPT  159 (293)
Q Consensus        82 ~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R--~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT  159 (293)
                      ..+|||++||+.|-++|+||+||..++|++....+  .+..+..|.++|..++|+.+++|..++....|||++..|+|||
T Consensus        49 K~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpS  128 (299)
T KOG2971|consen   49 KERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPS  128 (299)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCc
Confidence            46999999999999999999999999999987665  5777889999999999999999999999999999999999999


Q ss_pred             EEEEEeeeEeccccccccccCCC-CCCCcEEEec-CCCC-chhHHHHHHHHhcCCCCCC------CCCeEEEEEecCCeE
Q 022723          160 AYFGLLNVVTRHDIKDRKSIGTM-PEAYPHLILD-NFKS-KLGERTANILKHLFPVPKA------DTKRIITFANQSDYI  230 (293)
Q Consensus       160 ~~F~I~n~~l~~di~~~~~~g~~-s~~~P~LI~n-nF~t-~lg~~i~~~l~~lFp~p~~------~~rRVv~F~n~~d~I  230 (293)
                      +.|.|.|++++.|++.+   ||+ .+++|+|.|+ +|++ ++.++++++|.+.|..|..      --++|++|+..+|.|
T Consensus       129 vkFlv~n~hTM~Elkmt---gN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~I  205 (299)
T KOG2971|consen  129 VKFLVHNVHTMAELKMT---GNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKI  205 (299)
T ss_pred             eEEehhhhhhHHHhCCc---cccccCCcceeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeE
Confidence            99999999999999998   885 6799999998 5986 7789999999999977652      239999999999999


Q ss_pred             EEEEeeeeecCCCCcceeeeecceeEEEEEEeecccCCCCCCcEEEEeCCCCCccccccc
Q 022723          231 SFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF  290 (293)
Q Consensus       231 ~fRhy~y~~~~~~~~v~L~EiGPRftLkL~kI~~Gt~~~~~g~~ew~~~~~~~t~r~r~~  290 (293)
                      |||.|+|...   +++.|.||||||+|.+++|.+|+|+   |.+.|.+..|...++.|..
T Consensus       206 WfRnyqI~~~---ed~~L~EiGPRfvl~~ikif~gsFg---G~~lYenp~yvspn~~r~~  259 (299)
T KOG2971|consen  206 WFRNYQISEE---EDKTLIEIGPRFVLNVIKIFEGSFG---GPTLYENPKYVSPNMIRAV  259 (299)
T ss_pred             EEEEeEeccc---cCcceeeeccHHHHhHHHHHhccCC---CceeecCccccCHHHHHHH
Confidence            9999999633   6699999999999999999999997   8899999889887776654

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-33  Score=248.02  Aligned_cols=208  Identities=21%  Similarity=0.367  Sum_probs=181.2

Q ss_pred             chHHhh---cC-CCCCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEecc--CCccHHHHHHHhhhCCCceEEEEEeecCC
Q 022723           72 DDEYAN---AT-ERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNR--GGQVISEIIETCRAHEFTDVVLVHEHRGV  145 (293)
Q Consensus        72 ddE~~~---~~-~~~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R--~~~~lkdlv~~a~~~~~t~lii~~e~k~~  145 (293)
                      |.||-.   +| ...+++||++||++|.+.+++++||..++|++....+  -+..+.++.++|...+|+++++|..++..
T Consensus        16 ~~e~~qgn~~~f~~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~   95 (283)
T COG5154          16 DEEYVQGNSAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRS   95 (283)
T ss_pred             hhHHhccchhcccccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccc
Confidence            456665   22 3357999999999999999999999999999987766  46779999999999999999999999999


Q ss_pred             CceEEEeeCCCCCeEEEEEeeeEeccccccccccCC-CCCCCcEEEecC-CCC-chhHHHHHHHHhcCCCCC------CC
Q 022723          146 PDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGT-MPEAYPHLILDN-FKS-KLGERTANILKHLFPVPK------AD  216 (293)
Q Consensus       146 p~~L~I~~lP~GPT~~F~I~n~~l~~di~~~~~~g~-~s~~~P~LI~nn-F~t-~lg~~i~~~l~~lFp~p~------~~  216 (293)
                      ..+||+++.|+|||+.|.+.|.++++|+...   |+ +.++.|.|.|+. |.+ ++.+.++++|++.|..|.      ..
T Consensus        96 Dlyl~~ar~pnGptvkF~~~NlhTMdelNft---gN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpf  172 (283)
T COG5154          96 DLYLMGARIPNGPTVKFRMHNLHTMDELNFT---GNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPF  172 (283)
T ss_pred             cceeeeccCCCCCeEEEEEeccchHhhcCCc---cccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccc
Confidence            9999999999999999999999999999887   77 567999999986 875 778899999999998764      22


Q ss_pred             CCeEEEEEecCCeEEEEEeeeeec--CCCCcceeeeecceeEEEEEEeecccCCCCCCcEEEEeCCCCCcc
Q 022723          217 TKRIITFANQSDYISFRHHIYEKQ--GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTS  285 (293)
Q Consensus       217 ~rRVv~F~n~~d~I~fRhy~y~~~--~~~~~v~L~EiGPRftLkL~kI~~Gt~~~~~g~~ew~~~~~~~t~  285 (293)
                      .++|++|...+|.||||.|.|..+  ++.++|+|.||||||.|.+++|.+|+|+   |...|....|..+.
T Consensus       173 iD~v~~f~i~DgkIWvR~YeI~re~ed~~~dv~L~EIGPRfVmtvi~iLEgsFg---Gp~iYkn~~~vs~~  240 (283)
T COG5154         173 IDKVLCFFILDGKIWVRCYEIGRENEDKSKDVKLEEIGPRFVMTVIKILEGSFG---GPAIYKNETFVSST  240 (283)
T ss_pred             hhheEEEEEecCeEEEEEEeeccccccccccceeeeeccHHHHHHHHHHHhccC---CceeeecccccchH
Confidence            389999999999999999998643  2346799999999999999999999997   77888777776543

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.97  E-value=5.8e-30  Score=226.86  Aligned_cols=173  Identities=16%  Similarity=0.292  Sum_probs=139.0

Q ss_pred             EEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCC---CeEE
Q 022723           85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG---PTAY  161 (293)
Q Consensus        85 vlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~G---PT~~  161 (293)
                      ||||||++||+++++|++||..+||||.+++||++++++|++.|..+|+|++|||+|++|+|++|.|+|||.|   ||++
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~   81 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGY   81 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999855   5999


Q ss_pred             EEEeeeEeccccc--cccccCCCCCCCcEEEecCCCCchhH-HHHHHHHhcCCCC---C-CCC----------CeEEEEE
Q 022723          162 FGLLNVVTRHDIK--DRKSIGTMPEAYPHLILDNFKSKLGE-RTANILKHLFPVP---K-ADT----------KRIITFA  224 (293)
Q Consensus       162 F~I~n~~l~~di~--~~~~~g~~s~~~P~LI~nnF~t~lg~-~i~~~l~~lFp~p---~-~~~----------rRVv~F~  224 (293)
                      |+|+|+++++||.  +.   +++++|+|++|.+||.+.+|. ..+..++..+..|   . ..|          +-|+...
T Consensus        82 FkLsnV~l~~ei~~~~~---~~~s~~~p~iItts~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLVV~  158 (208)
T PRK03972         82 LYLHGIKLQREMGFRNL---RPIREDMPLVITTAKRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGVIE  158 (208)
T ss_pred             EEEccEEEHHHcccCCC---CCccccccEEEEcCCCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEEEe
Confidence            9999999999994  45   789999999999999999976 6667777777652   1 111          1122222


Q ss_pred             ecCCeEEEEEeeeeecCCCCcceeeeecceeEEEEEEeeccc
Q 022723          225 NQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGT  266 (293)
Q Consensus       225 n~~d~I~fRhy~y~~~~~~~~v~L~EiGPRftLkL~kI~~Gt  266 (293)
                      ..---.-+-.|++....      -.-+||-+..+.+...+|-
T Consensus       159 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  194 (208)
T PRK03972        159 RHPRGMAVNFYRLDVTK------ERPVGPLIFVKIWIMEDGR  194 (208)
T ss_pred             cCCCceEEEEEEecccc------ccccCCcEEEEEEEeccCc
Confidence            22111233344443321      2457999999988888775

>PRK00933 ribosomal biogenesis protein; Validated

Probab=99.54  E-value=1.9e-13  Score=118.22  Aligned_cols=114  Identities=25%  Similarity=0.440  Sum_probs=88.1

Q ss_pred             EEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEEEE
Q 022723           85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGL  164 (293)
Q Consensus        85 vlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F~I  164 (293)
                      ++||||++||.++++|+++|...+ |+.+++||+.+++++++.|..   .+++||+|++|+|++|.|+..-..+.+.+.+
T Consensus         1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~   76 (165)
T PRK00933          1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSYRL   76 (165)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHh-CCEEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEEEE
Confidence            489999999999999999999999 999999999999999887654   4999999999999999999998777766654


Q ss_pred             eeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcC
Q 022723          165 LNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLF  210 (293)
Q Consensus       165 ~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lF  210 (293)
                       ++.+..+....    .+....|.+  +++... +..++++|....
T Consensus        77 -~v~~~~~~~~~----~~~~~~p~~--~~~~~~-~~~~~e~f~~~l  114 (165)
T PRK00933         77 -SVKLQREISGP----VFKNRRPIK--SAFDVG-GDELAELFDYFL  114 (165)
T ss_pred             -EeeeecccCcc----eeecCCCcc--cchhhH-HHHHHHHHHHHH
Confidence             57777777542    233444533  333322 455666555533

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2.5e-13  Score=124.32  Aligned_cols=171  Identities=22%  Similarity=0.293  Sum_probs=134.3

Q ss_pred             CCChhHHHHHHHHHhcC-CCcEEeccCCcc-----HHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCC---eEEE
Q 022723           92 DPSAPLTQFVKELKFVF-PNAQRMNRGGQV-----ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGP---TAYF  162 (293)
Q Consensus        92 ~ps~r~r~f~kdL~~l~-Pns~~~~R~~~~-----lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GP---T~~F  162 (293)
                      ..+..+.+-+.||..+- |-+..++|+++.     -..+..+...+.|+-+++-+-+++.|++|+|++.-++-   .+.+
T Consensus        37 ~~~~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiEl  116 (307)
T KOG3031|consen   37 KTNKTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIEL  116 (307)
T ss_pred             hhchHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHH
Confidence            44578899999999996 999999997642     12344455555555555555558899999999999986   5889


Q ss_pred             EEeeeEeccccccccccCCCCCCCcEEEecC--CC-CchhHHHHHHHHhcCCCCC-----CCC-CeEEEEEecCCe-EEE
Q 022723          163 GLLNVVTRHDIKDRKSIGTMPEAYPHLILDN--FK-SKLGERTANILKHLFPVPK-----ADT-KRIITFANQSDY-ISF  232 (293)
Q Consensus       163 ~I~n~~l~~di~~~~~~g~~s~~~P~LI~nn--F~-t~lg~~i~~~l~~lFp~p~-----~~~-rRVv~F~n~~d~-I~f  232 (293)
                      .|.||+..+|+...   +-..+..|.|+|+|  |. ++..++++.+|...|..+.     ..| ++|+.|+..++. |+|
T Consensus       117 gI~~ykslsdF~~~---k~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~  193 (307)
T KOG3031|consen  117 GIENYKSLSDFKAA---KITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLF  193 (307)
T ss_pred             hhhhhhhhhhhhcc---CCCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeee
Confidence            99999999999876   43456789999998  54 4667899999999998854     234 899999998775 999


Q ss_pred             EEeeeeec--C-CCCcceeeeecceeEEEEEEeecc
Q 022723          233 RHHIYEKQ--G-GPKSLELKEIGPRFELRLYQIKLG  265 (293)
Q Consensus       233 Rhy~y~~~--~-~~~~v~L~EiGPRftLkL~kI~~G  265 (293)
                      |||+....  + ..++++|.|+||+++|.+.+...-
T Consensus       194 r~Y~lklkKs~~~~PRiELeE~GPsldf~irR~~~a  229 (307)
T KOG3031|consen  194 RVYRLKLKKSGTRTPRIELEEMGPSLDFEIRRTKLA  229 (307)
T ss_pred             eeeeeeeeeccCCCCceehhhcCCceeEEEEeccCC
Confidence            99997632  2 246799999999999999988753

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=1.5e-06  Score=78.73  Aligned_cols=169  Identities=14%  Similarity=0.157  Sum_probs=122.4

Q ss_pred             ChhHHHHHHHHHhcC-CCcEEeccCCcc--HH---HHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCC---eEEEEE
Q 022723           94 SAPLTQFVKELKFVF-PNAQRMNRGGQV--IS---EIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGP---TAYFGL  164 (293)
Q Consensus        94 s~r~r~f~kdL~~l~-Pns~~~~R~~~~--lk---dlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GP---T~~F~I  164 (293)
                      ++.+...+=|+..+- |-...+.|++..  ..   -+--+...+.+.-.+++...++.+.+|.+.+.-+--   .+.|.|
T Consensus        39 ~k~lldvi~d~~alkkp~~i~f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i  118 (316)
T COG5106          39 RKTLLDVICDTEALKKPKEIGFIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKI  118 (316)
T ss_pred             chhhhhhhcchhhhccchhhccccCCcccccccCCHHHHHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhh
Confidence            345566666776664 888888886542  11   123345566677777788888899999999887653   478899


Q ss_pred             eeeEeccccccccccCCCCCCCcEEEecC--CCC-chhHHHHHHHHhcCCC-CC--CCC---CeEEEEEecCC-------
Q 022723          165 LNVVTRHDIKDRKSIGTMPEAYPHLILDN--FKS-KLGERTANILKHLFPV-PK--ADT---KRIITFANQSD-------  228 (293)
Q Consensus       165 ~n~~l~~di~~~~~~g~~s~~~P~LI~nn--F~t-~lg~~i~~~l~~lFp~-p~--~~~---rRVv~F~n~~d-------  228 (293)
                      .+|++..|+...   |...+-.|.++|.|  |++ |.-++|+.+|-..|.. +.  .++   ..|+.-..+++       
T Consensus       119 ~~yksvsdF~~~---~~~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~pl  195 (316)
T COG5106         119 NRYKSVSDFECA---GPELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPL  195 (316)
T ss_pred             hhhhehhhhhcc---CCccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccc
Confidence            999999999876   65567789999997  875 5678999999999987 32  222   56777765432       


Q ss_pred             -eEEEEEeeee---ecCCCCcceeeeecceeEEEEEEeecc
Q 022723          229 -YISFRHHIYE---KQGGPKSLELKEIGPRFELRLYQIKLG  265 (293)
Q Consensus       229 -~I~fRhy~y~---~~~~~~~v~L~EiGPRftLkL~kI~~G  265 (293)
                       .+.||-|.-.   ...+..++.|.|+|||+++++.++.--
T Consensus       196 p~v~fRVyk~k~~kt~~~lpr~elee~GPrldf~i~R~~~~  236 (316)
T COG5106         196 PLVVFRVYKTKLLKTKTNLPRLELEECGPRLDFEIVRSYHC  236 (316)
T ss_pred             cceeeeeeecccccccCCCCceehhhcccceeeEEEeecCC
Confidence             2578987643   122367899999999999999998743

>PRK03972 ribosomal biogenesis protein; Validated

Probab=95.77  E-value=0.081  Score=47.65  Aligned_cols=76  Identities=14%  Similarity=0.274  Sum_probs=58.3

Q ss_pred             EEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEee------CCCCC
Q 022723           85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICH------LPFGP  158 (293)
Q Consensus        85 vlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~------lP~GP  158 (293)
                      .+|||+.+++..+...++.+...+ +..+++|++.++.+|.   ...+..+++||.-+-. ...+.+++      -|-||
T Consensus       107 ~iItts~kt~~g~~~~Ak~lA~eL-gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~-~~~~~~~~~~~~~~~~~~~  181 (208)
T PRK03972        107 LVITTAKRVGLDHMAFAQVFAELT-GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPR-GMAVNFYRLDVTKERPVGP  181 (208)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHh-CCceeCcCCcCHHHHH---hhhcCceEEEEecCCC-ceEEEEEEeccccccccCC
Confidence            589999999999999999999999 8999999999999875   4445678888865521 13445555      36688


Q ss_pred             eEEEEEe
Q 022723          159 TAYFGLL  165 (293)
Q Consensus       159 T~~F~I~  165 (293)
                      .+.+++-
T Consensus       182 ~~~~~~~  188 (208)
T PRK03972        182 LIFVKIW  188 (208)
T ss_pred             cEEEEEE
Confidence            8777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
2cxh_A	217	Crystal Structure Of Probable Ribosomal Biogenesis		3e-04

>pdb|2CXH|A Chain A, Crystal Structure Of Probable Ribosomal Biogenesis Protein From Aeropyrum Pernix K1 Length = 217

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 84  KILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHR 143
           +IL+TTSR PS  +  FVK+L    P A R  RG     E+           +V+V E R
Sbjct: 35  RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSXEELAREAIIRGADRIVVVGERR 94
Query: 144 GVPDGLIICHLPFGP 158
           G P G+I  +   GP
Sbjct: 95  GNP-GIIRVYAVEGP 108
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	2e-65
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	4e-34

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2 Length = 217

 Score =  203 bits (518), Expect = 2e-65
 Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 20/212 (9%)

Query: 60  EDENTAIPRSHIDDEYA-NATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGG 118
                    SH+       +     +IL+TTSR PS  +  FVK+L    P A R  RG 
Sbjct: 10  HSSGLVPAGSHMLGGKGRPSGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGH 69

Query: 119 QVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFG-----LLNVVTRHDI 173
             + E+           +V+V E RG P G+I  +   GP          +  V    + 
Sbjct: 70  YSMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPERPDNIVSFIVKGVSLSRER 128

Query: 174 K---DRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTK---RIITFANQS 227
           +        G +  A P  +      +  +            P+A       I +   ++
Sbjct: 129 RWGLPSLRGGEVLVARP--LDSGVAVEFADAFVIAFHARLKPPEAAGYVEAVIESLDART 186

Query: 228 DYISFRHHIYEKQGGPKSLELKEIGPRFELRL 259
             ++FR+       GP    L+   P   ++ 
Sbjct: 187 VAVTFRYGGAPV--GP---MLRLGKPAEMVKR 213

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2 Length = 156

 Score =  120 bits (303), Expect = 4e-34
 Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 20/173 (11%)

Query: 85  ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRG 144
           +LLTTSR PS     F + L  +    + +NRG   + +++   R      V +V E  G
Sbjct: 2   MLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEAR----GPVAVVSERHG 56

Query: 145 VPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTAN 204
            P  +       G    + L N                PE     +  +      E   N
Sbjct: 57  NPARITF-LDERGGERGYILFNPSFEMK---------KPELADKAVRVSSCPPGSEGLCN 106

Query: 205 ILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFEL 257
           ++     V ++ ++   +     +Y      +  +         K +   F +
Sbjct: 107 LM--GLEVDESSSRDAWSIRTDEEYAWVMELMDARG---TPAGFKLLIRDFRV 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	100.0
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	99.91

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=100.00  E-value=2.1e-36  Score=270.37  Aligned_cols=173  Identities=19%  Similarity=0.200  Sum_probs=140.4

Q ss_pred             CccchHHhhcCCCCCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCce
Q 022723           69 SHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDG  148 (293)
Q Consensus        69 ~~~ddE~~~~~~~~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~  148 (293)
                      ++.+|||. +|..+||||||||++||+++++|++||+.+|||+.+++|++.+|++|++.|..++||++|||+|++++|++
T Consensus        21 ~~g~~~~~-~~~~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~   99 (217)
T 2cxh_A           21 MLGGKGRP-SGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNPGI   99 (217)
T ss_dssp             -------------CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEE
T ss_pred             cccCcccc-cCCCCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcE
Confidence            45568888 57889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCC---C-eEEEEEeeeEeccccccccccCC-CCCCCcEEEecCCCCchhHHHHHHHHhcCCCCCCCCC-----
Q 022723          149 LIICHLPFG---P-TAYFGLLNVVTRHDIKDRKSIGT-MPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTK-----  218 (293)
Q Consensus       149 L~I~~lP~G---P-T~~F~I~n~~l~~di~~~~~~g~-~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~p~~~~r-----  218 (293)
                      |||+|+|+|   | |++|+|+|+++++||+++   |+ ...++|+|+ +||++++|.++++||++|||.|.++..     
T Consensus       100 L~~~hlP~G~~~P~Ta~F~I~nv~l~~ei~~~---g~~~~~~rP~L~-~nF~t~~g~~i~~~f~~lFp~P~~~~~~~~~~  175 (217)
T 2cxh_A          100 IRVYAVEGPERPDNIVSFIVKGVSLSRERRWG---LPSLRGGEVLVA-RPLDSGVAVEFADAFVIAFHARLKPPEAAGYV  175 (217)
T ss_dssp             EEEEECCSSSCCEEEEEEEEEEEECHHHHTCC---CCCCCSCCEEEE-EESSSSTHHHHHHHHHHHHCCBSSCCSSSCEE
T ss_pred             EEEEECCCCCCCCcEEEEEEeeEEehhhhccC---CCccCCCCceEE-eeecCchHHHHHHHHHHHcCCCCCChhhhccc
Confidence            999999999   9 999999999999999988   75 467999999 999999999999999999999875543     


Q ss_pred             --eEEEEEecCCeEEEEEeeeeecCCCCcceeeeecceeEEE
Q 022723          219 --RIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELR  258 (293)
Q Consensus       219 --RVv~F~n~~d~I~fRhy~y~~~~~~~~v~L~EiGPRftLk  258 (293)
                        -++.+  ..+...+.-|   ..       ...+||.+-.+
T Consensus       176 ~d~~~~i--~~~~~~v~f~---~~-------~~~~Gp~i~i~  205 (217)
T 2cxh_A          176 EAVIESL--DARTVAVTFR---YG-------GAPVGPMLRLG  205 (217)
T ss_dssp             EEEEEEE--ETTEEEEEEE---CS-------SSEEEEEEEEE
T ss_pred             ccEEEEE--cCCcEEEEEe---cC-------CCccCcEEEEc
Confidence              23344  3443333332   22       25789876555

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=99.91  E-value=4.8e-24  Score=181.65  Aligned_cols=152  Identities=19%  Similarity=0.287  Sum_probs=119.9

Q ss_pred             eEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEEE
Q 022723           84 KILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFG  163 (293)
Q Consensus        84 kvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F~  163 (293)
                      |++||||++||+++++|+++|..++ |+.+++||+.+++++++.|...    ++||+|++|+|++|.|+|+|+|||++|+
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~v~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~~f~   75 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERGYIL   75 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH-TCEECCCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh-CCEEEeeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEEEEE
Confidence            6899999999999999999999999 9999999999999999998543    9999999999999999999999999999


Q ss_pred             EeeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcCCCCCCCCCeEEEEEecCCeEEEEEeeeeecCCC
Q 022723          164 LLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGP  243 (293)
Q Consensus       164 I~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~p~~~~rRVv~F~n~~d~I~fRhy~y~~~~~~  243 (293)
                      + |+++++|++..      .   |..|...+.++.+..+.++|.  ||..+..+++|++|..++++++.=.+ |...|  
T Consensus        76 ~-nv~l~~~~~~~------~---~~~v~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~i~f-~~~~~--  140 (156)
T 1w94_A           76 F-NPSFEMKKPEL------A---DKAVRVSSCPPGSEGLCNLMG--LEVDESSSRDAWSIRTDEEYAWVMEL-MDARG--  140 (156)
T ss_dssp             E-EEEECSSCCCC------S---SCCCEESCCCTTCHHHHHHHT--CEECCSCCTTEEEEECCSSSSEEEEE-ECTTS--
T ss_pred             E-ceEEcccCccc------C---CceEEEecCChhHHHHHHHHC--CCccCCCCceEEEEEeCCCcEEEEEE-EcCCC--
Confidence            8 99999999643      1   333555567777766766665  34445566789999866666432221 22223  


Q ss_pred             CcceeeeecceeEEEEE
Q 022723          244 KSLELKEIGPRFELRLY  260 (293)
Q Consensus       244 ~~v~L~EiGPRftLkL~  260 (293)
                           ..+||++-.+=+
T Consensus       141 -----~~~Gp~i~ik~~  152 (156)
T 1w94_A          141 -----TPAGFKLLIRDF  152 (156)
T ss_dssp             -----SEEEEEEEEEEE
T ss_pred             -----CccCCEEEEEEe
Confidence                 478988766533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	2e-59
d1w94a1	154	c.51.1.2 (A:1-154) Probable ribosomal biogenesis p	8e-50

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score =  185 bits (471), Expect = 2e-59
 Identities = 37/181 (20%), Positives = 57/181 (31%), Gaps = 16/181 (8%)

Query: 84  KILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHR 143
           +IL+TTSR PS  +  FVK+L    P A R  RG   + E+           +V+V E R
Sbjct: 3   RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERR 62

Query: 144 GVPDGLIICHLPFGP-----TAYFGLLNVVTRHDIK-DRKSIGTMPEAYPHLILDNFKSK 197
           G P G+I  +   GP        F +  V    + +    S+          +      +
Sbjct: 63  GNP-GIIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVE 121

Query: 198 LGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFEL 257
             +            P+A         +           Y             +GP   L
Sbjct: 122 FADAFVIAFHARLKPPEAAGYVEAVIESLDARTVAVTFRYGG---------APVGPMLRL 172

Query: 258 R 258
            
Sbjct: 173 G 173

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  159 bits (405), Expect = 8e-50
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 22/172 (12%)

Query: 85  ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRG 144
           +LLTTSR PS     F + L  +    + +NRG   + +++          V +V E  G
Sbjct: 1   MLLTTSRKPSQRTRSFSQRLSRIMGW-RYINRGKMSLRDVLIEA----RGPVAVVSERHG 55

Query: 145 VPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTAN 204
            P  +       G    + L N                    P L     +       + 
Sbjct: 56  NPARITF-LDERGGERGYILFNPSFEMK-------------KPELADKAVRVSSCPPGSE 101

Query: 205 ILKHLFPVPKADTKR--IITFANQSDYISFRHHIYEKQGGPKSLELKEIGPR 254
            L +L  +   ++      +     +Y      +   +G P   +L     R
Sbjct: 102 GLCNLMGLEVDESSSRDAWSIRTDEEYAWVMELMD-ARGTPAGFKLLIRDFR 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	100.0
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	100.0

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=2.8e-45  Score=317.66  Aligned_cols=164  Identities=22%  Similarity=0.270  Sum_probs=152.3

Q ss_pred             eEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCC-----
Q 022723           84 KILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGP-----  158 (293)
Q Consensus        84 kvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GP-----  158 (293)
                      |||||||++||+++++|++||+.+||||.+++||+++++||+++|..+||||+|||+|++|+| +|+++|+|+||     
T Consensus         3 kvLITTSr~ps~~~r~f~kdL~~v~Pns~~~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~lP~GP~~~~~   81 (180)
T d2cxha1           3 RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPERPDN   81 (180)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEE-EEEEEEECCSSSCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhCCCCEEeecCCCcHHHHHHHHHHCCCCeEEEEEccCCCC-cEEEEECCCCCCCccc
Confidence            899999999999999999999999999999999999999999999999999999999999999 69999999999     


Q ss_pred             eEEEEEeeeEeccccccccc-cCCCCCCCcEEEecCCCCchhHHHHHHHHhcCCCCCCCCCeEEEEEecCCeEEEEEeee
Q 022723          159 TAYFGLLNVVTRHDIKDRKS-IGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIY  237 (293)
Q Consensus       159 T~~F~I~n~~l~~di~~~~~-~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~p~~~~rRVv~F~n~~d~I~fRhy~y  237 (293)
                      |++|+|+||++++|++.... .+..+.+.|++|||||+|+||++++++|+++||+|++.+++|++|+||+|+||||+|+|
T Consensus        82 t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~lilnnf~t~Lg~~~~~~f~~lf~~p~~~~~~vvt~~n~~d~if~~~~~~  161 (180)
T d2cxha1          82 IVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVEFADAFVIAFHARLKPPEAAGYVEAVIESLDARTVAVTFRY  161 (180)
T ss_dssp             EEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSSSTHHHHHHHHHHHHCCBSSCCSSSCEEEEEEEEEETTEEEEEEEC
T ss_pred             eEEEEEEEEEEehhhccccCCCCCCccccchhHhcccchHHHHHHHHHHHhhCCCchhcCcEEEEEEecCCeEEEEEEec
Confidence            99999999999999975421 14567889999999999999999999999999999999999999999999999999998


Q ss_pred             eecCCCCcceeeeecceeEE
Q 022723          238 EKQGGPKSLELKEIGPRFEL  257 (293)
Q Consensus       238 ~~~~~~~~v~L~EiGPRftL  257 (293)
                      ..         .++||++-+
T Consensus       162 ~~---------~~~GP~~rl  172 (180)
T d2cxha1         162 GG---------APVGPMLRL  172 (180)
T ss_dssp             SS---------SEEEEEEEE
T ss_pred             CC---------CCCCCEEEe
Confidence            42         468998654

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=9.7e-38  Score=262.57  Aligned_cols=135  Identities=20%  Similarity=0.232  Sum_probs=125.9

Q ss_pred             EEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEEEE
Q 022723           85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGL  164 (293)
Q Consensus        85 vlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F~I  164 (293)
                      ||||||++||+++++||+||..+|||+ +++||+.+++++++.|    +|++|||+|++|+|++|.| |+|+|||++|++
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~P~~-~~~Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~f~l   74 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIMGWR-YINRGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERGYIL   74 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHHTCE-ECCCTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEEEEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHhCCCe-EEEcCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEEEEE
Confidence            699999999999999999999999985 8999999999999887    6999999999999999998 999999999999


Q ss_pred             eeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcCCC-CCCCCCe-EEEEEecCCeEEEEEeeee
Q 022723          165 LNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKR-IITFANQSDYISFRHHIYE  238 (293)
Q Consensus       165 ~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~-p~~~~rR-Vv~F~n~~d~I~fRhy~y~  238 (293)
                      +||++.+|             +|+||+|||++++|.+++++|+++||. |+..+++ |++|+||+|+|+++||.+.
T Consensus        75 ~~v~l~~e-------------~p~li~~~f~t~lg~~v~~~L~~lf~~~~~~~~~~~~itf~n~~d~i~~~~~~d~  137 (154)
T d1w94a1          75 FNPSFEMK-------------KPELADKAVRVSSCPPGSEGLCNLMGLEVDESSSRDAWSIRTDEEYAWVMELMDA  137 (154)
T ss_dssp             EEEEECSS-------------CCCCSSCCCEESCCCTTCHHHHHHHTCEECCSCCTTEEEEECCSSSSEEEEEECT
T ss_pred             eeEEcccc-------------CCcCcccccccccchhHHHHHHHHcCCChhhcceeeEEEEecCCCEEEEEEEeec
Confidence            99987765             699999999999999999999999999 6777765 9999999999999998443