Citrus Sinensis ID: 022929
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | 2.2.26 [Sep-21-2011] | |||||||
| P23525 | 344 | 37 kDa inner envelope mem | N/A | no | 0.989 | 0.834 | 0.816 | 1e-131 | |
| C3MCY6 | 258 | Ubiquinone/menaquinone bi | yes | no | 0.406 | 0.457 | 0.365 | 2e-10 | |
| A6UFF7 | 258 | Ubiquinone/menaquinone bi | yes | no | 0.396 | 0.445 | 0.358 | 1e-09 | |
| Q92SK7 | 258 | Ubiquinone/menaquinone bi | yes | no | 0.396 | 0.445 | 0.35 | 5e-09 | |
| Q8CSH9 | 241 | Demethylmenaquinone methy | yes | no | 0.455 | 0.547 | 0.351 | 1e-08 | |
| Q5HP74 | 241 | Demethylmenaquinone methy | yes | no | 0.455 | 0.547 | 0.351 | 1e-08 | |
| Q1RJY5 | 248 | Ubiquinone/menaquinone bi | yes | no | 0.506 | 0.592 | 0.254 | 1e-08 | |
| A9ILA7 | 260 | Ubiquinone/menaquinone bi | yes | no | 0.475 | 0.530 | 0.291 | 1e-08 | |
| A8GXR2 | 248 | Ubiquinone/menaquinone bi | yes | no | 0.506 | 0.592 | 0.254 | 1e-08 | |
| A8F2G9 | 248 | Ubiquinone/menaquinone bi | yes | no | 0.503 | 0.588 | 0.277 | 1e-08 |
| >sp|P23525|IN37_SPIOL 37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/294 (81%), Positives = 262/294 (89%), Gaps = 7/294 (2%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKH-IPKLSLIAKPRTVQS------IKCS 53
MA SMLNG + LI G TP F SDF G + +P+L+L R +++ KC+
Sbjct: 1 MACSMLNGVDKLALISGKTPNRLRFSGSDFTGSYKLPRLNLPPNSRNLRAKTLTTVTKCT 60
Query: 54 LSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML 113
LSA+ RPASQPRFIQ+K+EAFWFYRFLSIVYD++INPGHWTEDMRD ALEPADL+NRNML
Sbjct: 61 LSASERPASQPRFIQNKQEAFWFYRFLSIVYDNIINPGHWTEDMRDVALEPADLNNRNML 120
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
VVDVGGGTGFTTLGI+KHVD KNVTILDQSPHQLAKAK K+PLKEC+I+EGDAEDLPFPT
Sbjct: 121 VVDVGGGTGFTTLGIIKHVDPKNVTILDQSPHQLAKAKAKKPLKECRIIEGDAEDLPFPT 180
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FADVWMLFPK
Sbjct: 181 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPK 240
Query: 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ+
Sbjct: 241 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQL 294
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Not yet known, one of the major proteins of the inner membrane of the chloroplast envelope. Spinacia oleracea (taxid: 3562) |
| >sp|C3MCY6|UBIE_RHISN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rhizobium sp. (strain NGR234) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGD 165
N V+DV GGTG IV+ K + T+LD + LA +A++K L + VE +
Sbjct: 71 NYRVLDVAGGTGDIAFRIVEASGRKAHATVLDINGSMLAVGAERARKKGLLGNLEFVEAN 130
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
AEDLPF + D Y A I P + ++EAYRVLK GG+ ++ L F
Sbjct: 131 AEDLPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFY 190
Query: 226 DVW 228
D W
Sbjct: 191 DAW 193
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rhizobium sp. (strain NGR234) (taxid: 394) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A6UFF7|UBIE_SINMW Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Sinorhizobium medicae (strain WSM419) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAED 168
V+DV GGTG IV+ K T+LD + L+ +A++K + VE +AED
Sbjct: 74 VLDVAGGTGDIAFRIVERSGRKAQATVLDINGSMLSVGAERARKKGIEANLEFVEANAED 133
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
LPF + D Y A I P + +REAYRVLK GG+ ++ L F D W
Sbjct: 134 LPFAANSFDAYTIAFGIRNVPRIEVALREAYRVLKRGGRLLVLEFSEVEMPLLDRFYDAW 193
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Sinorhizobium medicae (strain WSM419) (taxid: 366394) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rhizobium meliloti (strain 1021) GN=ubiE PE=3 SV=2 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAED 168
V+DV GGTG IV+ K + T+LD + L+ +A++K VE +AED
Sbjct: 74 VLDVAGGTGDIAFRIVERSGRKAHATVLDINGSMLSVGAERARKKGIEANLDFVEANAED 133
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
LPF + D Y A I P + ++EAYRVLK GG+ ++ L F D W
Sbjct: 134 LPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFYDAW 193
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q8CSH9|UBIE_STAES Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ubiE PE=3 SV=1 | Back alignment and function description |
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Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GT T+ + + V +K VT LD S + L KQK L+ ++V GDA +LPF
Sbjct: 54 LDVCCGTADWTIALSEAVGSKGQVTGLDFSENMLEVGKQKTASLENIQLVHGDAMNLPFD 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-----SRYFAD 226
+ D YV+ G + PD ++E +RVLK GG + PT L S YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK 247
V +F K +E EW Q++ F
Sbjct: 173 VMPIFGKMFAKSKEEYEWLQQSTFN 197
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q5HP74|UBIE_STAEQ Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GT T+ + + V +K VT LD S + L KQK L+ ++V GDA +LPF
Sbjct: 54 LDVCCGTADWTIALSEAVGSKGQVTGLDFSENMLEVGKQKTASLENIQLVHGDAMNLPFD 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-----SRYFAD 226
+ D YV+ G + PD ++E +RVLK GG + PT L S YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK 247
V +F K +E EW Q++ F
Sbjct: 173 VMPIFGKMFAKSKEEYEWLQQSTFN 197
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q1RJY5|UBIE_RICBR Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia bellii (strain RML369-C) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK----NVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K + ++T+ D + L +AK+K + K
Sbjct: 56 NLNSNILDVASGSGDIALKLAKKAKDRGSNISLTLSDINEEMLRQAKKKSIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGG----------KACI 210
AE+LPFP + D Y A I PD + ++EAYRVLK G K +
Sbjct: 116 FTVASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESL 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
+ Y + + Y + LFP ++E+ ++AGF+++ K +
Sbjct: 176 LQDFYKFYSFNVIPKIGQIITGNKEAYDYLVESIDLFPSQDEFRIMIKEAGFEEINYKNL 235
Query: 255 G 255
Sbjct: 236 S 236
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rickettsia bellii (strain RML369-C) (taxid: 336407) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A9ILA7|UBIE_BART1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 37/175 (21%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE------PLKECKIVEGDA 166
V+DV GGTG I+K K + T+LD + L+ KQ+ PL VE +A
Sbjct: 76 VLDVAGGTGDIAFRILKASRQKAHATVLDINGSMLSVGKQRAQKNGLAPL--IDFVEANA 133
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACIIGPVYPTFWLSRYFA 225
E LPF D Y A I P + +REA+RVLK GG+ C+ WL + +
Sbjct: 134 EHLPFEDQSFDAYTIAFGIRNVPHIDQALREAFRVLKPGGRFLCLEFSNVEMPWLDKIY- 192
Query: 226 DVWML--------------------------FPKEEEYIEWFQKAGFKDVQLKRI 254
D+W FPK+ ++ ++AGF V + +
Sbjct: 193 DLWSFHAIPKLGQFIANDGDAYRYLVESIRKFPKQNDFAHMIKQAGFSRVSYRNL 247
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Bartonella tribocorum (strain CIP 105476 / IBS 506) (taxid: 382640) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A8GXR2|UBIE_RICB8 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia bellii (strain OSU 85-389) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK----NVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K + ++T+ D + L +AK+K + K
Sbjct: 56 NLNSNILDVASGSGDIALKLAKKAKDRGSNISLTLSDINEEMLRQAKKKSIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGG----------KACI 210
AE+LPFP + D Y A I PD + ++EAYRVLK G K +
Sbjct: 116 FTVASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESL 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
+ Y + + Y + LFP ++E+ ++AGF+++ K +
Sbjct: 176 LQDFYKFYSFNVIPKIGKIITGNKEAYDYLVESIDLFPSQDEFRIMIKEAGFEEINYKNL 235
Query: 255 G 255
Sbjct: 236 S 236
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rickettsia bellii (strain OSU 85-389) (taxid: 391896) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A8F2G9|UBIE_RICM5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia massiliae (strain Mtu5) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K V+ ++T+ D + L +AK+K + K
Sbjct: 56 NLNSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI--------- 210
AE+LPFP D D Y A I PD + ++EA RVLK GK C+
Sbjct: 116 FTVASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGY 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
I Y + + Y + LFP ++E+ + AGF++V K +
Sbjct: 176 IKDFYKFYSFNIIPSIGQMIVGNKEAYEYLVESIELFPSQDEFRIMIKDAGFEEVGYKNL 235
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rickettsia massiliae (strain Mtu5) (taxid: 416276) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| 219842168 | 340 | 2-methyl-6-phytylbenzoquinone methyltran | 0.986 | 0.841 | 0.869 | 1e-142 | |
| 255559875 | 342 | chloroplast inner envelope protein, puta | 0.986 | 0.836 | 0.877 | 1e-141 | |
| 224062301 | 340 | predicted protein [Populus trichocarpa] | 0.982 | 0.838 | 0.873 | 1e-140 | |
| 224085545 | 340 | predicted protein [Populus trichocarpa] | 0.986 | 0.841 | 0.859 | 1e-138 | |
| 356536451 | 342 | PREDICTED: 37 kDa inner envelope membran | 0.982 | 0.833 | 0.836 | 1e-134 | |
| 388497534 | 344 | unknown [Lotus japonicus] | 0.986 | 0.831 | 0.837 | 1e-134 | |
| 358249098 | 342 | uncharacterized protein LOC100783986 [Gl | 0.982 | 0.833 | 0.836 | 1e-134 | |
| 345114364 | 351 | 2-methyl-6-phytylbenzoquinone methyltran | 0.986 | 0.814 | 0.824 | 1e-134 | |
| 345114368 | 351 | 2-methyl-6-phytylbenzoquinone methyltran | 0.986 | 0.814 | 0.824 | 1e-133 | |
| 345114370 | 351 | 2-methyl-6-phytylbenzoquinone methyltran | 0.986 | 0.814 | 0.824 | 1e-133 |
| >gi|219842168|dbj|BAH10641.1| 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/291 (86%), Positives = 273/291 (93%), Gaps = 5/291 (1%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKPRTVQSI----KCSLSA 56
MAS MLNGAE FTL+ G+TPKG FL SDFHG H P+++LI+ R ++ KC+LSA
Sbjct: 1 MASLMLNGAENFTLMSGITPKGLGFLGSDFHGNHFPRVNLISSSRISRTRTVMPKCNLSA 60
Query: 57 TSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVD 116
SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADL+NRN+LVVD
Sbjct: 61 -SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNNRNLLVVD 119
Query: 117 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176
VGGGTGFTTLGIVKHVDA+NVTILDQSPHQLAKAKQKEPLK+CKI+EGDAEDLPFPTDYA
Sbjct: 120 VGGGTGFTTLGIVKHVDAQNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLPFPTDYA 179
Query: 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236
DRYVSAGSIEYWPDPQRGI+EAYRVLKLGGKAC+IGPVYPTFWLSR+FADVWMLFPKEEE
Sbjct: 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKEEE 239
Query: 237 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
YIEWF+KAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL++
Sbjct: 240 YIEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLKL 290
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559875|ref|XP_002520956.1| chloroplast inner envelope protein, putative [Ricinus communis] gi|223539793|gb|EEF41373.1| chloroplast inner envelope protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/293 (87%), Positives = 271/293 (92%), Gaps = 7/293 (2%)
Query: 1 MASSMLNGAETFTLIR--GMTPKGSSFLASDFHGKHIPKLSLIAKPRTVQSI----KCSL 54
MASSMLNGAE TL+R KG SF SDF+GKH P+++L + R +++ KCSL
Sbjct: 1 MASSMLNGAENLTLMRIKSTNHKGLSFSGSDFNGKHFPRVNLTSSSRILKTTTIAPKCSL 60
Query: 55 SATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLV 114
SA SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLS+RNMLV
Sbjct: 61 SA-SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSDRNMLV 119
Query: 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174
VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI+EGDAEDLPFPTD
Sbjct: 120 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTD 179
Query: 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234
YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FADVWMLFPKE
Sbjct: 180 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKE 239
Query: 235 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ+
Sbjct: 240 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQL 292
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224062301|ref|XP_002300813.1| predicted protein [Populus trichocarpa] gi|222842539|gb|EEE80086.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/292 (87%), Positives = 269/292 (92%), Gaps = 7/292 (2%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIA-----KPRTVQSIKCSLS 55
MASSMLNGAE TLIRG+TPKG F SD G+H K++ +A K RT+ + CSLS
Sbjct: 1 MASSMLNGAENLTLIRGITPKGLGFGGSDLQGRHFSKVNAVASTRISKARTLTPM-CSLS 59
Query: 56 ATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVV 115
A SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPADLSNRNMLVV
Sbjct: 60 A-SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLSNRNMLVV 118
Query: 116 DVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175
DVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKI+EGDAEDLPF TDY
Sbjct: 119 DVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLPFRTDY 178
Query: 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235
ADRYVSAGSIEYWPDPQRGI+EAYRVLKLGGKAC+IGPVYPTFWLSR+FAD WMLFPKEE
Sbjct: 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADAWMLFPKEE 238
Query: 236 EYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
EYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ+
Sbjct: 239 EYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQL 290
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085545|ref|XP_002307615.1| predicted protein [Populus trichocarpa] gi|222857064|gb|EEE94611.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/291 (85%), Positives = 266/291 (91%), Gaps = 5/291 (1%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKPRTVQ----SIKCSLSA 56
M SS+ NGAE LIRG+TPKG FL SD G+H K+SLI+ R + + KCSLSA
Sbjct: 1 MTSSVFNGAENLALIRGITPKGLGFLGSDLQGRHFSKVSLISSTRISKARTLTPKCSLSA 60
Query: 57 TSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVD 116
RPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPADLS+RN +VVD
Sbjct: 61 -PRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLSDRNTIVVD 119
Query: 117 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176
VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKIVEGDAEDLPFPTDYA
Sbjct: 120 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIVEGDAEDLPFPTDYA 179
Query: 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236
DRYVSAGSIEYWPDPQRGI+EAYRVLKL GKAC+IGPV+PTFWLSR+FADVWMLFPKEEE
Sbjct: 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKLEGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239
Query: 237 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ+
Sbjct: 240 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQL 290
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536451|ref|XP_003536751.1| PREDICTED: 37 kDa inner envelope membrane protein, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/294 (83%), Positives = 263/294 (89%), Gaps = 9/294 (3%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKP-------RTVQSIKCS 53
MAS ML+G E TL R +T G F SD HGK+ P++S +A R++ KCS
Sbjct: 1 MASVMLSGTEKLTL-RTLTGNGLGFTGSDLHGKNFPRVSFVATTSAKVPNFRSLVVPKCS 59
Query: 54 LSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML 113
+SA SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADL++RNM+
Sbjct: 60 VSA-SRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNDRNMI 118
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI+EGDAEDLPF T
Sbjct: 119 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFRT 178
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
DYADRYVSAGSIEYWPDPQRGI+EAYRVLKLG KAC+IGPVYPTFWLSR+FADVWMLFPK
Sbjct: 179 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKLGAKACLIGPVYPTFWLSRFFADVWMLFPK 238
Query: 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ+
Sbjct: 239 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQL 292
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388497534|gb|AFK36833.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 247/295 (83%), Positives = 261/295 (88%), Gaps = 9/295 (3%)
Query: 1 MASSMLNGAETFTLIRGMTP--KGSSFLASDFHGKHIPKLSLIAKPR------TVQSIKC 52
MAS ML G E L+ TP G F SD HGK PKLS A R T+ +C
Sbjct: 1 MASVMLCGTEKLALLSTRTPYANGFGFTGSDLHGKSFPKLSFTATARVPNSRRTMVVPRC 60
Query: 53 SLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNM 112
S+SA SRP+SQPRFIQHK+EAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNM
Sbjct: 61 SVSA-SRPSSQPRFIQHKEEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNM 119
Query: 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP 172
+VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI+EGDAEDLPF
Sbjct: 120 IVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFR 179
Query: 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFP 232
TDYADRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKAC+IGPVYPTFWLSR+FADVWMLFP
Sbjct: 180 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVYPTFWLSRFFADVWMLFP 239
Query: 233 KEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
KEEEYIEWF+KAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ+
Sbjct: 240 KEEEYIEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQL 294
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358249098|ref|NP_001240248.1| uncharacterized protein LOC100783986 [Glycine max] gi|255641609|gb|ACU21077.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/294 (83%), Positives = 263/294 (89%), Gaps = 9/294 (3%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKP-------RTVQSIKCS 53
M S ML+G E TL R +T G F SD HGK+ P++S A R++ KCS
Sbjct: 1 MGSVMLSGTEKLTL-RTLTGNGLGFTGSDLHGKNFPRVSFAATTSAKVPNFRSIVVPKCS 59
Query: 54 LSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML 113
+SA SRP+SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADL++RNM+
Sbjct: 60 VSA-SRPSSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNDRNMI 118
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI+EGDAEDLPF T
Sbjct: 119 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFRT 178
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
DYADRYVSAGSIEYWPDPQRGI+EAYRVLKLGGKAC+IGPVYPTFWLSR+FADVWMLFPK
Sbjct: 179 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPK 238
Query: 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ+
Sbjct: 239 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQL 292
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345114364|gb|AEN74936.1| 2-methyl-6-phytylbenzoquinone methyltranferase 1 [Arachis hypogaea] gi|345114372|gb|AEN74940.1| 2-methyl-6-phytylbenzoquinone methyltranferase 1 [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust.
Identities = 249/302 (82%), Positives = 263/302 (87%), Gaps = 16/302 (5%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHI------PKLSLIAKPRT-------V 47
MASSM +G E+ TL TP G F AS+FH K I + K R V
Sbjct: 1 MASSMFSGTESLTLFSSKTPNGLCFNASNFHSKRIGFNSSTTNFNFSNKARVRHNSNRIV 60
Query: 48 QSI--KCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPA 105
++I KCSLSA SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPA
Sbjct: 61 RTIVPKCSLSA-SRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPA 119
Query: 106 DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD 165
DLS+RNM+VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKI+EGD
Sbjct: 120 DLSDRNMIVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGD 179
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
AEDLPF TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FA
Sbjct: 180 AEDLPFRTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACVIGPVYPTFWLSRFFA 239
Query: 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 285
DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL
Sbjct: 240 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 299
Query: 286 QV 287
Q+
Sbjct: 300 QL 301
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345114368|gb|AEN74938.1| 2-methyl-6-phytylbenzoquinone methyltranferase 3 [Arachis hypogaea] gi|345114376|gb|AEN74942.1| 2-methyl-6-phytylbenzoquinone methyltranferase [Arachis duranensis] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/302 (82%), Positives = 263/302 (87%), Gaps = 16/302 (5%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHI------PKLSLIAKPRT-------V 47
MASSM +G E+ TL TP G F AS+FH K I + K R V
Sbjct: 1 MASSMFSGTESLTLFSSKTPNGLCFNASNFHSKRIGFNSSTTNFNFSNKARVRHNSNRIV 60
Query: 48 QSI--KCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPA 105
++I KCSLSA SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPA
Sbjct: 61 RTIVPKCSLSA-SRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPA 119
Query: 106 DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD 165
DLS+RNM+VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKI+EGD
Sbjct: 120 DLSDRNMIVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGD 179
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
AEDLPF TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FA
Sbjct: 180 AEDLPFRTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACVIGPVYPTFWLSRFFA 239
Query: 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 285
DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL
Sbjct: 240 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 299
Query: 286 QV 287
Q+
Sbjct: 300 QL 301
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345114370|gb|AEN74939.1| 2-methyl-6-phytylbenzoquinone methyltranferase [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/302 (82%), Positives = 262/302 (86%), Gaps = 16/302 (5%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHI------PKLSLIAKPRT-------V 47
MASSM +G E+ TL TP G F AS FH K I + K R V
Sbjct: 1 MASSMFSGTESLTLFSSKTPNGLCFNASTFHSKRIGFNSSTTNFNFSNKARVRHNSNRIV 60
Query: 48 QSI--KCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPA 105
++I KCSLSA SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPA
Sbjct: 61 RTIVPKCSLSA-SRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPA 119
Query: 106 DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD 165
DLS+RNM+VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKI+EGD
Sbjct: 120 DLSDRNMIVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGD 179
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
AEDLPF TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FA
Sbjct: 180 AEDLPFRTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACVIGPVYPTFWLSRFFA 239
Query: 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 285
DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL
Sbjct: 240 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 299
Query: 286 QV 287
Q+
Sbjct: 300 QL 301
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| TAIR|locus:2087393 | 338 | APG1 "ALBINO OR PALE GREEN MUT | 0.965 | 0.828 | 0.772 | 6.7e-120 | |
| TIGR_CMR|NSE_0950 | 230 | NSE_0950 "ubiquinone/menaquino | 0.341 | 0.430 | 0.304 | 2e-05 | |
| UNIPROTKB|E2RF28 | 327 | COQ5 "Uncharacterized protein" | 0.255 | 0.226 | 0.367 | 0.00014 | |
| UNIPROTKB|F1RJK0 | 329 | COQ5 "Uncharacterized protein" | 0.168 | 0.148 | 0.46 | 0.00019 | |
| UNIPROTKB|P30866 | 207 | yafE "predicted S-adenosylmeth | 0.317 | 0.444 | 0.313 | 0.00028 | |
| RGD|1310857 | 327 | Coq5 "coenzyme Q5 homolog, met | 0.168 | 0.149 | 0.46 | 0.00029 | |
| TIGR_CMR|DET_1591 | 221 | DET_1591 "methyltransferase, U | 0.455 | 0.597 | 0.286 | 0.00035 | |
| UNIPROTKB|Q5LVS6 | 208 | SPO0620 "Uncharacterized prote | 0.613 | 0.855 | 0.246 | 0.00037 | |
| TIGR_CMR|SPO_0620 | 208 | SPO_0620 "conserved hypothetic | 0.613 | 0.855 | 0.246 | 0.00037 | |
| UNIPROTKB|J9P2R9 | 461 | COQ5 "Uncharacterized protein" | 0.255 | 0.160 | 0.367 | 0.00037 |
| TAIR|locus:2087393 APG1 "ALBINO OR PALE GREEN MUTANT 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
Identities = 227/294 (77%), Positives = 248/294 (84%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIA-----KPRTVQSIKCSLS 55
MAS MLNGA TF PKG S+ H + IP+ +L++ PR + +CS S
Sbjct: 1 MASLMLNGAITF-------PKGLGSPGSNLHARSIPRPTLLSVTRTSTPRLSVATRCSSS 53
Query: 56 A--TSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML 113
+ +SRP++QPRFIQHKKEA+WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLS+ +M
Sbjct: 54 SVSSSRPSAQPRFIQHKKEAYWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSHPDMR 113
Query: 114 VVDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
VVDV IVK V AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT
Sbjct: 114 VVDVGGGTGFTTLGIVKTVKAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
DYADRYVSAGSIEYWPDPQRGIREAYRVLK+GGKAC+IGPVYPTFWLSR+F+DVWMLFPK
Sbjct: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKIGGKACLIGPVYPTFWLSRFFSDVWMLFPK 233
Query: 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
EEEYIEWF+ AGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ+
Sbjct: 234 EEEYIEWFKNAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQL 287
|
|
| TIGR_CMR|NSE_0950 NSE_0950 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 32/105 (30%), Positives = 52/105 (49%)
Query: 111 NMLVVDVXXXXXXXXXXIVK-HVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDA 166
N V+D+ ++K H+ + + + D++ L AK + E K+V DA
Sbjct: 45 NQRVLDMAAGTGDITLRLLKTHIPVE-IILCDKNHEMLEIAKDRLLDEGYVNLKVVSADA 103
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI 210
LPF D YV A + + + +R + EAYRVLK GG+ +C+
Sbjct: 104 AQLPFEDCSFDHYVVAFGVRNFSNIERSLTEAYRVLKPGGRFSCL 148
|
|
| UNIPROTKB|E2RF28 COQ5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 95 (38.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 29/79 (36%), Positives = 39/79 (49%)
Query: 137 VTILDQSPHQLAKAKQKEPLKECKI----VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ 192
V + D + L KQK + K V GDAE+LPF D D Y A I
Sbjct: 167 VVVCDINKEMLKIGKQKARAQGYKAGLAWVLGDAEELPFDDDKFDVYTIAFGIRNVTHID 226
Query: 193 RGIREAYRVLKLGGK-ACI 210
+ ++EA+RVLK GG+ C+
Sbjct: 227 QALQEAHRVLKPGGRFLCL 245
|
|
| UNIPROTKB|F1RJK0 COQ5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 93 (37.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI 210
V GDAE+LPF D D Y A I R ++EA+RVLK GG+ C+
Sbjct: 198 VLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCL 247
|
|
| UNIPROTKB|P30866 yafE "predicted S-adenosylmethionine-dependent methyltransferase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 111 (44.1 bits), Expect = 0.00028, P = 0.00028
Identities = 32/102 (31%), Positives = 49/102 (48%)
Query: 134 AKNVTIL---DQSPHQL---AKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187
A+NV+ + D S H L A+A + LK +G AE LPF + D +S S +
Sbjct: 14 AQNVSAVVAYDLSAHMLDVVAQAAEARQLKNITTRQGYAESLPFADNAFDIVISRYSAHH 73
Query: 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWM 229
W D +RE R+LK GG+ ++ + P D+W+
Sbjct: 74 WHDVGAALREVNRILKPGGRLIVMDVMSP----GHPVRDIWL 111
|
|
| RGD|1310857 Coq5 "coenzyme Q5 homolog, methyltransferase (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 93 (37.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI 210
V GDAE+LPF D D Y A I R ++EA+RVLK GG+ C+
Sbjct: 196 VLGDAEELPFDDDRFDVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCL 245
|
|
| TIGR_CMR|DET_1591 DET_1591 "methyltransferase, UbiE/COQ5 family" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 111 (44.1 bits), Expect = 0.00035, P = 0.00035
Identities = 41/143 (28%), Positives = 66/143 (46%)
Query: 71 KEAFWFYRFLSIVYDHV----INPGHWTEDMRDDALEPADLSNRNMLVVDVXXXXXXXXX 126
K +W R+ S VYD + P E R ++ A++ R+ ++D+
Sbjct: 13 KTDYW-KRY-SKVYDFLTRLLFTPFGGEERFRRKFVDEANIQPRDN-IIDMCCGTGATTR 69
Query: 127 XIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR-YVSAGSI 185
+ + VT +D SP +A+AK+K + ++LPFP D+ +VS G
Sbjct: 70 LVAGKLKDGQVTGVDLSPDMMARAKEKVTGLPAVFQQASGDNLPFPEGTFDKAFVSYGLH 129
Query: 186 EYWPDPQR--GIREAYRVLKLGG 206
E P P R I++ Y+VLK GG
Sbjct: 130 EM-PTPIRHEAIKQIYKVLKPGG 151
|
|
| UNIPROTKB|Q5LVS6 SPO0620 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 0.00037, P = 0.00037
Identities = 47/191 (24%), Positives = 78/191 (40%)
Query: 62 SQPRFI--QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVXX 119
S+P FI Q +K W ++ V P + D AL DL++ + L+ D+
Sbjct: 2 SKPEFIARQGRKPTGWLGHIVARVMARETRPEN------DRALSFLDLADGDSLI-DIGC 54
Query: 120 XXXXXXXXIVKHVDAKNVTILDQSPHQL--AKAKQKEPLKECKIVE--GDAEDLPFPTDY 175
+ V +D S L A+A+ ++ + + ++ D LPFP
Sbjct: 55 GHGETLFQADRIVRLSGSVGVDFSEVMLKRARARNRDAVWDTRMAFHCADTAALPFPDKR 114
Query: 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235
+ +S +I +WP+P + EA+RVL+ GG+ F D FP +
Sbjct: 115 FGKALSVHTIYFWPNPAAHLAEAFRVLRRGGRFLFCYRSTADRRAVEEFPDTVYRFPSVQ 174
Query: 236 EYIEWFQKAGF 246
E E + GF
Sbjct: 175 EVEEKLKLVGF 185
|
|
| TIGR_CMR|SPO_0620 SPO_0620 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 0.00037, P = 0.00037
Identities = 47/191 (24%), Positives = 78/191 (40%)
Query: 62 SQPRFI--QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVXX 119
S+P FI Q +K W ++ V P + D AL DL++ + L+ D+
Sbjct: 2 SKPEFIARQGRKPTGWLGHIVARVMARETRPEN------DRALSFLDLADGDSLI-DIGC 54
Query: 120 XXXXXXXXIVKHVDAKNVTILDQSPHQL--AKAKQKEPLKECKIVE--GDAEDLPFPTDY 175
+ V +D S L A+A+ ++ + + ++ D LPFP
Sbjct: 55 GHGETLFQADRIVRLSGSVGVDFSEVMLKRARARNRDAVWDTRMAFHCADTAALPFPDKR 114
Query: 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235
+ +S +I +WP+P + EA+RVL+ GG+ F D FP +
Sbjct: 115 FGKALSVHTIYFWPNPAAHLAEAFRVLRRGGRFLFCYRSTADRRAVEEFPDTVYRFPSVQ 174
Query: 236 EYIEWFQKAGF 246
E E + GF
Sbjct: 175 EVEEKLKLVGF 185
|
|
| UNIPROTKB|J9P2R9 COQ5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 95 (38.5 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 29/79 (36%), Positives = 39/79 (49%)
Query: 137 VTILDQSPHQLAKAKQKEPLKECKI----VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ 192
V + D + L KQK + K V GDAE+LPF D D Y A I
Sbjct: 301 VVVCDINKEMLKIGKQKARAQGYKAGLAWVLGDAEELPFDDDKFDVYTIAFGIRNVTHID 360
Query: 193 RGIREAYRVLKLGGK-ACI 210
+ ++EA+RVLK GG+ C+
Sbjct: 361 QALQEAHRVLKPGGRFLCL 379
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P23525 | IN37_SPIOL | No assigned EC number | 0.8163 | 0.9896 | 0.8343 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 290 | |||
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 0.0 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 4e-25 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 8e-23 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 1e-18 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 8e-18 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 2e-15 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 2e-15 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 1e-14 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-14 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-12 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 4e-11 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 5e-11 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 5e-11 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 4e-10 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 1e-08 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 2e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 7e-08 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 7e-07 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 2e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-06 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 7e-06 | |
| PLN02232 | 160 | PLN02232, PLN02232, ubiquinone biosynthesis methyl | 7e-05 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 5e-04 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 0.002 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 0.002 | |
| TIGR00755 | 253 | TIGR00755, ksgA, dimethyladenosine transferase | 0.003 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 575 bits (1484), Expect = 0.0
Identities = 247/291 (84%), Positives = 264/291 (90%), Gaps = 5/291 (1%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKPR----TVQSIKCSLSA 56
MASSMLNGAE LIRG+TPKG F SD HG+ PK L + R + +CS S+
Sbjct: 1 MASSMLNGAENLRLIRGITPKGLGFSGSDLHGRSFPKKLLSSSRRSPRLRTLAARCSSSS 60
Query: 57 TSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVD 116
SRPASQPRFIQHKKEAFWFYRFLSIVYDH+INPGHWTEDMRDDALEPADLS+RN+ VVD
Sbjct: 61 -SRPASQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVD 119
Query: 117 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176
VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI+EGDAEDLPFPTDYA
Sbjct: 120 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYA 179
Query: 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236
DRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKAC+IGPV+PTFWLSR+FADVWMLFPKEEE
Sbjct: 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239
Query: 237 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
YIEWF KAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ+
Sbjct: 240 YIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQL 290
|
Length = 340 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-25
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 30/170 (17%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDA 166
V+DV GTG L + K V V LD S L A++K + ++ + V GDA
Sbjct: 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA 110
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
E+LPFP + D + + D + ++E YRVLK GG+ ++ P + R
Sbjct: 111 ENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI 170
Query: 227 VWML---------------------------FPKEEEYIEWFQKAGFKDV 249
++ FP +EE + +KAGF++V
Sbjct: 171 LYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEV 220
|
Length = 238 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 8e-23
Identities = 44/96 (45%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174
+DVG GTG + + A VT +D SP LA A+++ P K V GDAEDLPFP +
Sbjct: 1 LDVGCGTGLLAEALARRGGA-RVTGVDLSPEMLALARKRAP---RKFVVGDAEDLPFPDE 56
Query: 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI 210
D VS+ + + PDP+R +RE RVLK GGK I
Sbjct: 57 SFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-18
Identities = 52/204 (25%), Positives = 75/204 (36%), Gaps = 46/204 (22%)
Query: 78 RFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKN 136
LS + W V+DV GTG + + K D
Sbjct: 17 DLLSFGLHRL-----WRRRAVKLIGVFKGQK-----VLDVACGTGDLAIELAKSAPDRGK 66
Query: 137 VTILDQSPHQLAKAKQKEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEY----WPDP 191
VT +D S L AK+K L + ++ DAE LPF D A +I + D
Sbjct: 67 VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFE----DNSFDAVTIAFGLRNVTDI 122
Query: 192 QRGIREAYRVLKLGGKACI----------IGPVY--------PT---FWLSRYFADVWM- 229
Q+ +RE YRVLK GG+ I + Y P+ A ++
Sbjct: 123 QKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLP 182
Query: 230 ----LFPKEEEYIEWFQKAGFKDV 249
FP +EE ++AGF++V
Sbjct: 183 ESIRAFPSQEELAAMLKEAGFEEV 206
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 8e-18
Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 41/177 (23%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK----EPLKECKIVEGDAED 168
V+D+ GTG + + K V V LD S LA ++K + V+GDAE
Sbjct: 55 VLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA 114
Query: 169 LPFPTDYADRYVSAGSIEY----WPDPQRGIREAYRVLKLGGKACI----------IGPV 214
LPFP + D +I + PD + +RE YRVLK GG+ I +
Sbjct: 115 LPFPDNSFDAV----TIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKA 170
Query: 215 YPTFWLS-----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
Y F+L Y A+ FP +EE ++AGF+ V+ + +
Sbjct: 171 Y-DFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNL 226
|
Length = 239 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-15
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 30/166 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL 169
+DV GGTG T G+ + V LD + + L + ++K E + ++G+AE+L
Sbjct: 51 FLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEEL 110
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL--------- 220
PF D D + + +PD + ++EA+RVLK GG+ + P L
Sbjct: 111 PFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYF 170
Query: 221 -----------------SRYFADVWMLFPKEEEYIEWFQKAGFKDV 249
+Y + FP ++ F+KAGFK V
Sbjct: 171 KYVMPFMGKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSV 216
|
Length = 233 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-15
Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 30/159 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQ--KEPLKECKIVEGDAEDLP 170
V+DVG G G + + V V +D+S LA AK+ + V GDA+ LP
Sbjct: 23 VLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82
Query: 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKA---------CIIGPVYP----- 216
FP D S +++ DP R + E RVL+ GG+ +
Sbjct: 83 FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRK 142
Query: 217 --TFWLSRYFADVWM---LFPKEEEYIEWFQKAGFKDVQ 250
FW FAD W+ L F++AG D++
Sbjct: 143 ILNFWSDH-FADPWLGRRLPG-------LFREAGLTDIE 173
|
Length = 241 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-14
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE---CKIVEGDAEDLP 170
V+D+G GTG L + A+ VT +D SP L A++ ++++GDAE+LP
Sbjct: 2 VLDLGCGTGALALALASGPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 171 FPTD-YADRYVSAGSIEYWP-DPQRGIREAYRVLKLGGKACII 211
D D +S + + D R + EA R+LK GG +
Sbjct: 61 PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-14
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 13/151 (8%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAK---QKEPLKECKIVE 163
+ V+D+G GTG+ T + + + V +D S + KAK +K + + ++
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 164 GDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW- 219
GD E+LP + D +S + + PDP + + E RVLK GG + PV +
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELP 120
Query: 220 -----LSRYFADVWMLFPKEEEYIEWFQKAG 245
L R +A V +++ + ++AG
Sbjct: 121 ALLEDLERLYAGVLEGAIGKKKLLTILREAG 151
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-12
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK------EPLKECKIVEGDAED 168
+D+G GTG +++ + T +D SP L A ++ ++ DA D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 169 LPFPT-DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
L + D V++ + + DP+ +R R+LK GG
Sbjct: 61 LDPGSFDVV---VASNVLHHLADPRAVLRNLRRLLKPGGV 97
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (147), Expect = 4e-11
Identities = 39/182 (21%), Positives = 62/182 (34%), Gaps = 7/182 (3%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEP--ADLSNRNMLVVDVGGGTGFTTLGIVKHV 132
+ + + E++ D L L + V+D+G GTG L
Sbjct: 11 RILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGG 70
Query: 133 DAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAED--LPFPTDYADRYVSAGSIEY 187
V +D SP LA A+ + L V DA LPF + V + + +
Sbjct: 71 RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130
Query: 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247
P + +RE RVLK GG+ + + R A + P E +
Sbjct: 131 LLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLERGDILLELEALL 190
Query: 248 DV 249
+
Sbjct: 191 RL 192
|
Length = 257 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 5e-11
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 32/170 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL 169
+DV GT ++ + + V + +V LD S + L+ +QK L ++V G+A +L
Sbjct: 49 ALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL 108
Query: 170 PFPTDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGK-ACI----------------- 210
PF + D YV+ G + PD + +RE YRV+K GGK C+
Sbjct: 109 PFDDNSFD-YVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFY 167
Query: 211 ---IGPVYPTFWLSRYFADVWML-----FPKEEEYIEWFQKAGFKDVQLK 252
I P++ + Y W+ FP +E E FQ+AGFKDV++K
Sbjct: 168 FKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-11
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPF 171
++D+G GTG + +VT +D S L AK++ K K+ V DA DLPF
Sbjct: 1 ILDLGCGTGRVLRALA-RAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPF 59
Query: 172 PTDYADRYVSAG-SIEYWPDPQ--RGIREAYRVLKLGG 206
D + AG S++Y Q +REA R+L+ GG
Sbjct: 60 EEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-10
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
V+D+G GTG+ T ++K D S LA+AK K + + + GDAE LP
Sbjct: 38 VLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLS-ENVQFICGDAEKLPLED 96
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSRYFADVWMLFP 232
D VS ++++ D + + E RVLK GG T L + F + +
Sbjct: 97 SSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYL 156
Query: 233 KEEEYIEWFQKAGFKDVQLK 252
+E K F+ + L+
Sbjct: 157 SLDELKALL-KNSFELLTLE 175
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-08
Identities = 40/171 (23%), Positives = 61/171 (35%), Gaps = 30/171 (17%)
Query: 91 GHWTEDMRDDALEP-ADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
E L V+D+G GTG + + +VT +D SP +
Sbjct: 2 RRQRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRERG--FDVTGVDPSPAAVLI 59
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRY---VSAGSIEYWPDPQRGIREAYRVLKLGG 206
D P P A +Y + +E+ PDP +++ +LK GG
Sbjct: 60 FSL--------------FDAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGG 105
Query: 207 KACIIGPVYPTFWLSRYFADVWMLFPK--------EEEYIEWFQKAGFKDV 249
I P+ +R FA+ L P+ EE +KAGF+ V
Sbjct: 106 VLLISTPLAD--DDARLFANWHYLRPRNTHISFYSEESLKRLLEKAGFELV 154
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-08
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI-VEGDAEDLP 170
M ++D+G G G + + V + S QLA A+++ + + VE +D
Sbjct: 74 MTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR 132
Query: 171 FPTDYADRYVSAGSIEY-----WPDPQRGIREAYRVLKLGGKA---CIIGP--VYPTF-- 218
+ DR VS G E+ + D ++ Y +LK GG+ I GP + F
Sbjct: 133 DFEEPFDRIVSVGMFEHVGKENYDD---FFKKVYALLKPGGRMLLHSITGPDQEFRRFPD 189
Query: 219 WLSRY-FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVR 263
++ +Y F + P E +E +AGF + ++ + P + R +R
Sbjct: 190 FIDKYIFPGGEL--PSISEILELASEAGFVVLDVESLRPHYARTLR 233
|
Length = 283 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-08
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDA-EDL 169
V+D+G GTG + + + VT +D SP L A++ L V+GDA + L
Sbjct: 5 VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDAL 64
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
+ D G + + +LK GG+
Sbjct: 65 DLLEGF-DAVFIGGGGGDLLEL---LDALASLLKPGGR 98
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-07
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 137 VTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
V LD S QLA A ++ L K + +EGDA DLPF Y D + D
Sbjct: 101 VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVD 160
Query: 191 PQRGIREAYRVLKLGGKACII 211
+ ++E YRVLK G + I+
Sbjct: 161 RLKAMQEMYRVLKPGSRVSIL 181
|
Length = 261 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 54/211 (25%), Positives = 77/211 (36%), Gaps = 65/211 (30%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTI-LDQSPHQLAKAKQ---KEPLKECKIVEGDAEDL 169
V+D+G G GF + V I +D +P LAKA+ K + G+ E L
Sbjct: 81 VLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL 140
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK---------------------- 207
P + D +S I PD +R +EA+RVLK GG+
Sbjct: 141 PVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAEL 200
Query: 208 --ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK-------- 257
C+ G + +EEEY+ +AGF D+ I PK
Sbjct: 201 YAGCVAGAL------------------QEEEYLAMLAEAGFVDI---TIQPKREYRIPDA 239
Query: 258 ------WYRGVRRH--GLIMGCSVTGVKPAS 280
W R G I+ +V KPA+
Sbjct: 240 REFLEDWGIAPGRQLDGYIVSATVEATKPAA 270
|
Length = 272 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIVEGDAE 167
V+D G G+G L + V ++ P A A+++ L ++V GDA
Sbjct: 2 DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61
Query: 168 DLP-FPTDYADRYVS----AGSIEYWPDPQ----RGIREAYRVLKLGGKACIIGP 213
+L P D + D + R + A R+LK GG +I P
Sbjct: 62 ELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITP 116
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-06
Identities = 47/185 (25%), Positives = 70/185 (37%), Gaps = 22/185 (11%)
Query: 86 HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILD--QS 143
H INP + +R+ A DL + V+DVG G G L +VT +D +
Sbjct: 38 HKINP-LRLDYIREVARLRFDLPG--LRVLDVGCGGG--ILSEPLARLGASVTGIDASEK 92
Query: 144 PHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK 203
P ++AK E + EDL D +E+ PDP+ +R +++K
Sbjct: 93 PIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVK 152
Query: 204 LGG-------------KAC-IIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249
GG IIG Y + + D + F K E I W A K +
Sbjct: 153 PGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHD-YRKFIKPAELIRWLLGANLKII 211
Query: 250 QLKRI 254
K +
Sbjct: 212 DRKGL 216
|
Length = 243 |
| >gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 7e-05
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 140 LDQSPHQLAKAKQKEPLK-----EC-KIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR 193
LD S QLA A ++ LK +C + +EGDA DLPF D + D R
Sbjct: 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLR 62
Query: 194 GIREAYRVLKLGGKACII 211
++E YRVLK G + I+
Sbjct: 63 AMKEMYRVLKPGSRVSIL 80
|
Length = 160 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
V+D G G G + VT LD SP LA+A+QK+ + GD E LP T
Sbjct: 46 VLDAGCGPG--WMSRYWRERGSQVTALDLSPPMLAQARQKDAAD--HYLAGDIESLPLAT 101
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
D S ++++ + +RE YRV++ GG
Sbjct: 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGV 135
|
Length = 251 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 96 DMRDDALE----PADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
M +++L P D R +VDVG G G ++ + + A NV + SP Q A+A
Sbjct: 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARAN 158
Query: 152 ---QKEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
+ L + DA + PF D S S E+ PD ++ ++E RV GG+
Sbjct: 159 ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGR 218
Query: 208 ACIIG 212
I+
Sbjct: 219 IIIVT 223
|
Length = 340 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.002
Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 53/191 (27%)
Query: 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK-- 151
TE++ + ALE L + V+D+G G+G L + K VT +D SP LA A+
Sbjct: 73 TEELVEAALE--RLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKN 130
Query: 152 -QKEPLKECKIVEGDAEDLPFPTDYADR------YVSAGSIE--------YWP------- 189
+ L + ++ D + P P D Y+ I + P
Sbjct: 131 AARLGLDNVEFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGG 189
Query: 190 -----DPQRGIREAYRVLKLGGKACI-IGPVYPTFWLSRYFADVWMLFPKEEEYIEW-FQ 242
+R I +A R+LK GG + IG + E + F+
Sbjct: 190 EDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------------------YDQGEAVRALFE 230
Query: 243 KAGFKDVQLKR 253
AGF DV+ ++
Sbjct: 231 AAGFADVETRK 241
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154
E + +E A++ + +V+++G G G T ++K AK VT ++ + ++
Sbjct: 15 ESVIQKIVEAANVLEGD-VVLEIGPGLGALTEPLLKR--AKKVTAIEIDRRLAERLRKLL 71
Query: 155 PLKE-CKIVEGDAEDLPFP 172
L E +I+EGDA +
Sbjct: 72 SLYENLEIIEGDALKVDLN 90
|
In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.92 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.91 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.9 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.88 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.88 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.87 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.86 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.85 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.84 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.84 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.84 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.84 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.82 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.82 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.81 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.81 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.81 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.8 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.8 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.8 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.8 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.8 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.79 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.79 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.79 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.78 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.78 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.77 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.76 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.76 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.75 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.75 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.75 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.75 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.74 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.74 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.74 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.73 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.73 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.72 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.71 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.71 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.71 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.71 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.7 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.69 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.69 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.68 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.68 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.67 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.67 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.67 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.67 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.67 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.66 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.66 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.66 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.66 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.66 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.66 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.64 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.64 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.64 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.63 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.63 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.63 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.62 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.62 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.62 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.62 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.61 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.61 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.61 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.61 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.59 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.59 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.59 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.57 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.56 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.56 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.56 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.54 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.54 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.52 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.52 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.52 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.52 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.52 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.51 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.51 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.51 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.5 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.5 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.5 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.49 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.48 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.48 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.47 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.47 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.46 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.45 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.44 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.44 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.44 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.42 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.41 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.41 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.41 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.4 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.4 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.4 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.4 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.38 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.35 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.33 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.33 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.32 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.31 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.31 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.29 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.28 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.28 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.27 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.25 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.23 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.23 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.22 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.22 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.22 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.21 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.2 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.18 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.18 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.17 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.17 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.16 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.15 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.15 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.15 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.14 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.14 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.13 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.12 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.12 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.11 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.11 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.11 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.08 | |
| PLN02366 | 308 | spermidine synthase | 99.08 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.08 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.08 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.05 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.05 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.03 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 99.03 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.02 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 99.01 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.01 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.97 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.96 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.95 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.94 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.93 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.93 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.92 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.92 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.91 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.9 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.9 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.89 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.88 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.83 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.82 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.79 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.79 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.78 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.76 | |
| PLN02823 | 336 | spermine synthase | 98.76 | |
| PLN02476 | 278 | O-methyltransferase | 98.75 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.74 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.73 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.73 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.71 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.67 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.67 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.66 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.65 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.64 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.61 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.61 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.6 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.57 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.56 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.53 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.53 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.52 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.52 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.51 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.51 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.5 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.48 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.48 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.46 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.43 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.42 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.35 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.35 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.35 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.33 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.28 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.28 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.27 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.26 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.26 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.25 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.24 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.2 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.2 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.19 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.19 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.15 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.14 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.14 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.12 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.09 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.07 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.07 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.07 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.06 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.02 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.99 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.98 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.96 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.96 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.95 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.94 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.91 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.9 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.88 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.86 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.82 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.79 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.66 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.64 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.63 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.6 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.57 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.57 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.53 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.48 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.48 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.45 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.44 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.39 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.34 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.21 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.12 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.07 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.04 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 97.02 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.01 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.98 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.91 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.88 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.84 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.83 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.76 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.63 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.53 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.47 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.39 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.38 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.35 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.31 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.24 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.17 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.14 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.1 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.09 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.07 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.98 | |
| PHA01634 | 156 | hypothetical protein | 95.9 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.85 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.69 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.66 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.62 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.48 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.44 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.44 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.29 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.28 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.22 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.18 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.01 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.79 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.74 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.51 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.44 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 94.35 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 94.32 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 94.23 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.08 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.07 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 93.8 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.7 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 93.66 | |
| COG5310 | 481 | Homospermidine synthase [Secondary metabolites bio | 93.43 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.35 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.14 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.14 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.13 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 93.02 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.91 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.87 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.81 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 92.7 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 92.65 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 92.58 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 92.45 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 92.43 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 92.32 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 92.22 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 92.12 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 92.09 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.89 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.73 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.52 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 91.23 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 91.08 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 91.04 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 90.93 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 90.76 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 90.66 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 90.17 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 90.06 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 90.0 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 89.98 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 89.66 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.57 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 89.49 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 89.48 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 89.37 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 89.37 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 89.2 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 89.12 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 89.0 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 88.86 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 88.28 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 88.25 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 88.18 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 87.71 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 87.65 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 87.63 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 87.61 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 87.53 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 87.47 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 87.12 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 86.81 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 86.48 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 86.34 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 86.3 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 86.27 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 86.13 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 86.0 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 85.97 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 85.64 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 85.39 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 85.39 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 85.2 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 85.14 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 85.13 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 85.1 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 85.08 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 84.71 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 84.55 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.44 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 84.31 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 84.23 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 84.1 | |
| PF11253 | 127 | DUF3052: Protein of unknown function (DUF3052); In | 83.95 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 83.93 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 83.91 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 83.89 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 83.89 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 83.84 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 83.23 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 83.14 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 82.71 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 82.45 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 82.4 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 82.16 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 81.98 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 81.72 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 81.37 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 81.34 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 81.33 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 81.05 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 80.93 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 80.85 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 80.84 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 80.82 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 80.77 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 80.61 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 80.57 | |
| PLN02494 | 477 | adenosylhomocysteinase | 80.56 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 80.52 |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=291.98 Aligned_cols=287 Identities=86% Similarity=1.430 Sum_probs=253.2
Q ss_pred CcccccccccccceecccCCCCCccccCCcCCCCCCccccccCCcee----eeeecccccCCCCCCchhHhhhhHHHHHH
Q 022929 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKPRTV----QSIKCSLSATSRPASQPRFIQHKKEAFWF 76 (290)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (290)
||++|++|.+.++++.+..|.|++|...++++++++...+....... .+..|+.+ ..++.+++.+.|+..+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~~~~~ 79 (340)
T PLN02490 1 MASSMLNGAENLRLIRGITPKGLGFSGSDLHGRSFPKKLLSSSRRSPRLRTLAARCSSS-SSRPASQPRFIQHKKEAFWF 79 (340)
T ss_pred CCccccccccccccccccCCcccCCCCCcccccccccccccccCcccccceeccccccc-cCCcccccchhhhhhcceeE
Confidence 89999999999999999999999999999999998866554443332 45566664 78999999999999999999
Q ss_pred HhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC
Q 022929 77 YRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 156 (290)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 156 (290)
|+..+.+|+..+.++.|.+.++..+++......++.+|||||||+|.++..+++..++.+++++|+|+++++.|+++...
T Consensus 80 y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~ 159 (340)
T PLN02490 80 YRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 159 (340)
T ss_pred ccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc
Confidence 99999999998888888888888888766554567899999999999999998887778999999999999999988665
Q ss_pred CCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHH
Q 022929 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236 (290)
Q Consensus 157 ~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
.+++++.+|+.++++++++||+|++..+++++++++..++++.++|+|||.+++.++..+..+..+.+.+.+..+++.++
T Consensus 160 ~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eE 239 (340)
T PLN02490 160 KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239 (340)
T ss_pred cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHH
Confidence 67899999999988888889999999999999999999999999999999999887665555555555555666678999
Q ss_pred HHHHHHHCCCcEEEEEEcCcccccccccccceeeeEEEEecCCCCCCCcccc
Q 022929 237 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQVT 288 (290)
Q Consensus 237 ~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~ 288 (290)
+.++|+++||+.+++++++..|+++++.++.+..+.|.++||.+|++|+|.|
T Consensus 240 l~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~ 291 (340)
T PLN02490 240 YIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLG 291 (340)
T ss_pred HHHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEeccccCCCccccC
Confidence 9999999999999999999999999999999999999999999999999987
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=174.59 Aligned_cols=180 Identities=28% Similarity=0.380 Sum_probs=139.7
Q ss_pred HHHHhHHhHhhhcccCC--CcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh
Q 022929 74 FWFYRFLSIVYDHVINP--GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151 (290)
Q Consensus 74 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 151 (290)
...|+..+..|+.+-.- ......+++.+++..... +|.+|||||||||.++..+++..+..+|+++|+|+.|++.|+
T Consensus 14 ~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~ 92 (238)
T COG2226 14 QKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR 92 (238)
T ss_pred HHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence 34555666666643311 112234455555555544 799999999999999999999988899999999999999999
Q ss_pred hhCCC---CCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch-hHhh-----
Q 022929 152 QKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF-WLSR----- 222 (290)
Q Consensus 152 ~~~~~---~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~----- 222 (290)
++... .+++|+.+|++.+||++++||+|.+.+.+++++++++.|+++.|+|||||.+++.+...+.. +...
T Consensus 93 ~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~ 172 (238)
T COG2226 93 EKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY 172 (238)
T ss_pred HHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence 98654 33889999999999999999999999999999999999999999999999999988766432 1111
Q ss_pred ---------------------hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 223 ---------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 223 ---------------------~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++......+++.+++.+.++++||+.+..+.+
T Consensus 173 ~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 173 YFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEee
Confidence 11112224578999999999999998875543
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=174.75 Aligned_cols=184 Identities=24% Similarity=0.258 Sum_probs=138.0
Q ss_pred HHHHHHHhHHhHhhhcccCCC--cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHH
Q 022929 71 KEAFWFYRFLSIVYDHVINPG--HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQL 147 (290)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~ 147 (290)
......|+..+..|+...... .....++..+++.... .++.+|||+|||+|.++..+++.. +..+|+|+|+|++|+
T Consensus 33 ~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml 111 (261)
T PLN02233 33 NERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA-KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL 111 (261)
T ss_pred HHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC-CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 334567777777777532211 0112223333333333 368899999999999999998875 357999999999999
Q ss_pred HHHhhhCC------CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh
Q 022929 148 AKAKQKEP------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS 221 (290)
Q Consensus 148 ~~a~~~~~------~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 221 (290)
+.|+++.. ..+++++++|+.++|+++++||+|++..++++++++..+++++.++|||||.+++.+...+.....
T Consensus 112 ~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~ 191 (261)
T PLN02233 112 AVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFT 191 (261)
T ss_pred HHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHH
Confidence 99986632 247899999999999999899999999999999999999999999999999999988765432111
Q ss_pred hh-------------------------hHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 222 RY-------------------------FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 222 ~~-------------------------~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
.. +......+++.+++.++++++||+.++...+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 192 TSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 10 11122346799999999999999998887764
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-24 Score=179.23 Aligned_cols=179 Identities=32% Similarity=0.474 Sum_probs=88.9
Q ss_pred HHHHhHHhHhhhcc---cCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHH
Q 022929 74 FWFYRFLSIVYDHV---INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAK 149 (290)
Q Consensus 74 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~ 149 (290)
...|+..+..|+.+ +..+ ....++..+++.... .++.+|||+|||+|..+..+++.. +..+|+|+|+|++|++.
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g-~~~~wr~~~~~~~~~-~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~ 87 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFG-QDRRWRRKLIKLLGL-RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV 87 (233)
T ss_dssp ----------------------------SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred HHHHHHHHHHhCCCccccCCc-HHHHHHHHHHhccCC-CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence 35666677777654 1111 112222233333333 378899999999999999999875 45799999999999999
Q ss_pred HhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh---
Q 022929 150 AKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY--- 223 (290)
Q Consensus 150 a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~--- 223 (290)
|+++.. ..+++++++|++++|+++++||+|++.+.+++++++.+.++++.|+|||||.+++.+...+.......
T Consensus 88 a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~ 167 (233)
T PF01209_consen 88 ARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYK 167 (233)
T ss_dssp HHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHH
T ss_pred HHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceee
Confidence 997733 34899999999999999999999999999999999999999999999999999998876654322111
Q ss_pred -----------------------hHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 224 -----------------------FADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 224 -----------------------~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+......+++.+++.++|+++||+.++.+.+
T Consensus 168 ~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~ 221 (233)
T PF01209_consen 168 FYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPL 221 (233)
T ss_dssp H-----------------------------------------------------
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111223467899999999999998877664
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=172.00 Aligned_cols=189 Identities=22% Similarity=0.256 Sum_probs=141.3
Q ss_pred hhhHHHHHHHhHHhHhhhcccCCC----ccc------------HHHHHhhccccCC----CCCCCEEEEEcCccchhHHH
Q 022929 68 QHKKEAFWFYRFLSIVYDHVINPG----HWT------------EDMRDDALEPADL----SNRNMLVVDVGGGTGFTTLG 127 (290)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------~~~~~~~l~~~~~----~~~~~~vLDiG~G~G~~~~~ 127 (290)
........+|+.....|+.+.... .|. ..+...+++.... ..++.+|||||||+|.++..
T Consensus 56 ~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~ 135 (340)
T PLN02244 56 DLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRY 135 (340)
T ss_pred hHHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHH
Confidence 344556678877777776543221 111 2344445555443 13678999999999999999
Q ss_pred HHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccC
Q 022929 128 IVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK 203 (290)
Q Consensus 128 l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~ 203 (290)
+++.+ +.+|+|+|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++..+++|+++..++++++.++||
T Consensus 136 La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLk 214 (340)
T PLN02244 136 LARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAA 214 (340)
T ss_pred HHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcC
Confidence 99986 6799999999999999887632 246899999999999988999999999999999999999999999999
Q ss_pred CCCEEEEEccCCCch---------hHhhhhHHHhh-----cCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 204 LGGKACIIGPVYPTF---------WLSRYFADVWM-----LFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 204 pgG~l~i~~~~~~~~---------~~~~~~~~~~~-----~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
|||.+++.+...... ........... .+.+.+++.++++++||+.++++++...
T Consensus 215 pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 215 PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 999999986543211 11111111111 1347899999999999999999988754
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-21 Score=160.91 Aligned_cols=181 Identities=28% Similarity=0.372 Sum_probs=135.4
Q ss_pred HHHHhHHhHhhhcccC--CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHH
Q 022929 74 FWFYRFLSIVYDHVIN--PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKA 150 (290)
Q Consensus 74 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a 150 (290)
..+|+..+..|+..-. .-......+..++..+... ++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.+
T Consensus 8 ~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a 86 (231)
T TIGR02752 8 HKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQ-AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG 86 (231)
T ss_pred HHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCC-CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 3455555555554211 1112333444555555543 68899999999999999999875 467999999999999999
Q ss_pred hhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-----
Q 022929 151 KQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR----- 222 (290)
Q Consensus 151 ~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----- 222 (290)
+++.. ..+++++.+|..++++++++||+|++..++++.+++.++++++.++|+|||.+++.+...+.....+
T Consensus 87 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~ 166 (231)
T TIGR02752 87 RQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFF 166 (231)
T ss_pred HHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHH
Confidence 87642 3468899999988888888899999999999999999999999999999999998876543321100
Q ss_pred ---------------------hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 223 ---------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 223 ---------------------~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
........+++.+++.++|+++||++++++.+.
T Consensus 167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 167 YFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 011223356789999999999999999888764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-20 Score=151.90 Aligned_cols=226 Identities=32% Similarity=0.430 Sum_probs=152.1
Q ss_pred CCCCccccCCcCCCCCCccc-c-ccCCceeeeeeccc--ccCCCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccH
Q 022929 20 PKGSSFLASDFHGKHIPKLS-L-IAKPRTVQSIKCSL--SATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTE 95 (290)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (290)
+.|+++.....+.++++.-. + ...++......|+- .+.+++...+++.+..-...++ .+...++.+....+ +
T Consensus 11 ~~~l~~p~~~~~ars~~~~~~~s~s~~~~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~--~YD~mND~mSlGiH--R 86 (296)
T KOG1540|consen 11 PLGLRSPGSFLNARSFSSNTLLSSSSPSLSVASKCTHFGFKTVRESEKERLVHHVFESVAK--KYDIMNDAMSLGIH--R 86 (296)
T ss_pred cccccCCccccccccccccccccccccccccccccccccccccchhhhhhHHHHHHHHHHH--HHHHHHHHhhcchh--H
Confidence 34556666666666554311 1 12222223333332 1344444444444443332222 12333333333322 1
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC------CeEEEEeCCHHHHHHHhhhCC------CCCceEEE
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA------KNVTILDQSPHQLAKAKQKEP------LKECKIVE 163 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~------~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~ 163 (290)
.+.+.++..+... ++.++||++||+|.++..+.+..+. .+|+++|+|++|++.++++.. ...+.++.
T Consensus 87 lWKd~~v~~L~p~-~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 87 LWKDMFVSKLGPG-KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHHhhhccCCC-CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 2233445555544 6799999999999999999988765 899999999999999988752 12488999
Q ss_pred cCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch-hHhh--------------------
Q 022929 164 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF-WLSR-------------------- 222 (290)
Q Consensus 164 ~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~-------------------- 222 (290)
+|++++||++++||..++.+.+.+++++++.+++++|+|||||++++.++..-.. .+..
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd 245 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGD 245 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhh
Confidence 9999999999999999999999999999999999999999999999887654331 1111
Q ss_pred -----hhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 223 -----YFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 223 -----~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
++......+++.+++..+.+++||..+.
T Consensus 246 ~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 246 RKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 1112223567899999999999999876
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=161.03 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=127.0
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCCCc
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~~~ 176 (290)
...+++.+... ++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++.. ..++.+...|+.+.++++++|
T Consensus 41 ~~~~l~~l~l~-~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIELN-ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCCCC-CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 44556655543 78999999999999999998765 6799999999999999998754 346899999998888888899
Q ss_pred cEEEecCcccccC--CHHHHHHHHHhccCCCCEEEEEccCCCch--hHh---hhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 177 DRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTF--WLS---RYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 177 D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
|+|++..+++|++ +...+++++.++|||||.+++.+...... +.. .........+.+.+++.++|+++||+.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 9999999888886 67789999999999999999987654321 111 1111112234688999999999999999
Q ss_pred EEEEcCcccc
Q 022929 250 QLKRIGPKWY 259 (290)
Q Consensus 250 ~~~~~~~~~~ 259 (290)
+.+.+++.+.
T Consensus 199 ~~~d~~~~~~ 208 (263)
T PTZ00098 199 VAKDISDYWL 208 (263)
T ss_pred eEEeCcHHHH
Confidence 9998876543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=165.96 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=118.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||||||+|.++..+++. +.+|+|+|+++++++.|+++... .+++++++|++++++.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 5679999999999999999875 78999999999999999876432 36899999998888777889999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhH------hhhh----H---HHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL------SRYF----A---DVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~------~~~~----~---~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
+|++++..+++++.++|||||.+++.+........ ..+. . ..+..+++.+++..+|+++||+++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999998765532100 0011 1 123346799999999999999999886
Q ss_pred EcC
Q 022929 253 RIG 255 (290)
Q Consensus 253 ~~~ 255 (290)
-+.
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 553
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=155.66 Aligned_cols=148 Identities=23% Similarity=0.256 Sum_probs=114.5
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEE
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
.+++.+... ++.+|||||||+|.++..+++..|+.+|+|+|+|+.+++.|+++ +++++.+|+.+++ ++++||+|
T Consensus 20 ~ll~~l~~~-~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 20 DLLARVGAE-RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----GVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HHHHhCCCC-CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----CCcEEEcChhhCC-CCCCceEE
Confidence 344444433 67899999999999999999998888999999999999999853 5789999998764 45679999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCc---hhHhh------hhHHH--------hhcCCCHHHHHHHHH
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT---FWLSR------YFADV--------WMLFPKEEEYIEWFQ 242 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~---~~~~~------~~~~~--------~~~~~~~~~~~~ll~ 242 (290)
++..+++|++++..+++++.++|||||.+++..+.... ..... .+... ...+.+.+++.++|+
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999987543211 11000 01110 112357899999999
Q ss_pred HCCCcEEEEEE
Q 022929 243 KAGFKDVQLKR 253 (290)
Q Consensus 243 ~aGf~~v~~~~ 253 (290)
++||++...+.
T Consensus 174 ~aGf~v~~~~~ 184 (255)
T PRK14103 174 DAGCKVDAWET 184 (255)
T ss_pred hCCCeEEEEee
Confidence 99998655443
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=152.65 Aligned_cols=145 Identities=22% Similarity=0.236 Sum_probs=118.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc--eEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--KIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v--~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||||||-|.++..+++. +..|+|+|+++++++.|+......++ ++.+..++++....++||+|+|..|++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 7899999999999999999998 79999999999999999988766554 4777777777666678999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh-h---------hhH---HHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-R---------YFA---DVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~---------~~~---~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.++++.+++.+.+++||||.+++++.+....... . ... ..+..+..++++..++..+|+.+.+..-+
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 9999999999999999999999998875421110 0 000 11234567899999999999998887666
Q ss_pred Cc
Q 022929 255 GP 256 (290)
Q Consensus 255 ~~ 256 (290)
..
T Consensus 217 ~y 218 (243)
T COG2227 217 TY 218 (243)
T ss_pred Ee
Confidence 43
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=169.78 Aligned_cols=150 Identities=20% Similarity=0.210 Sum_probs=123.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|+++.. ..++++..+|+...++++++||+|+|..+++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 377899999999999999999876 6799999999999999987753 2368999999988888788899999999999
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCc----hhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPT----FWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
|++++..+++++.++|+|||.+++.+..... ......+......+++.+++.++++++||++++++.+..++.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~ 420 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFL 420 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecchHHHH
Confidence 9999999999999999999999998765432 111222222222456899999999999999999888765544
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-19 Score=149.35 Aligned_cols=181 Identities=29% Similarity=0.405 Sum_probs=133.8
Q ss_pred HHHHhHHhHhhhcc---cCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHH
Q 022929 74 FWFYRFLSIVYDHV---INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAK 149 (290)
Q Consensus 74 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~ 149 (290)
..+|+..+..|+.. .... .....+..++..+... ++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.
T Consensus 14 ~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 91 (239)
T PRK00216 14 AEMFDSIAPKYDLMNDLLSFG-LHRVWRRKTIKWLGVR-PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAV 91 (239)
T ss_pred HHHHHHhhhhHHHHHHHHhcC-CcHHHHHHHHHHhCCC-CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Confidence 34566666666532 1111 1223344444444443 678999999999999999999875 5899999999999999
Q ss_pred HhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh---
Q 022929 150 AKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR--- 222 (290)
Q Consensus 150 a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~--- 222 (290)
++++... .++.+...|+.+.++..++||+|++..++++.+++..+++++.++|+|||.+++.+...+......
T Consensus 92 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~ 171 (239)
T PRK00216 92 GREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAY 171 (239)
T ss_pred HHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHH
Confidence 9987542 468899999988777777899999999999999999999999999999999988765443211000
Q ss_pred -----------------------hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 223 -----------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 223 -----------------------~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.+......+++.+++.++|+++||+.+++..+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 228 (239)
T PRK00216 172 DFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTG 228 (239)
T ss_pred HHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeec
Confidence 0011113456889999999999999988887653
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=157.59 Aligned_cols=193 Identities=22% Similarity=0.270 Sum_probs=133.2
Q ss_pred CcccHHHHHhhc-cccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh--h-CC-CCCceEEEcC
Q 022929 91 GHWTEDMRDDAL-EPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--K-EP-LKECKIVEGD 165 (290)
Q Consensus 91 ~~~~~~~~~~~l-~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~--~-~~-~~~v~~~~~d 165 (290)
.+|...+....+ ..+... ++.+|||||||+|.++..++... ...|+|+|+|+.++..++. + .. ..++.++.+|
T Consensus 103 ~ew~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d 180 (322)
T PRK15068 103 TEWRSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLG 180 (322)
T ss_pred ceehHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCC
Confidence 345444443332 233322 67899999999999999999884 3479999999998875432 2 21 3478999999
Q ss_pred CCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch------hHhhhhHHHh--hcCCCHHHH
Q 022929 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRYFADVW--MLFPKEEEY 237 (290)
Q Consensus 166 ~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~------~~~~~~~~~~--~~~~~~~~~ 237 (290)
++++++ +++||+|+|..+++|..++..+++++.+.|+|||.+++.+...... ....+ .... ...++.+++
T Consensus 181 ~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~~~~~~~~lps~~~l 258 (322)
T PRK15068 181 IEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-AKMRNVYFIPSVPAL 258 (322)
T ss_pred HHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-hcCccceeCCCHHHH
Confidence 999888 6679999999999999999999999999999999998875432211 11111 1111 123588999
Q ss_pred HHHHHHCCCcEEEEEEcCcccccccccccceeeeE-------EEEecCCCCCC-Cccc
Q 022929 238 IEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCS-------VTGVKPASGDS-PLQV 287 (290)
Q Consensus 238 ~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~a~k~~~~~~-~~~~ 287 (290)
.++|+++||+.+++.....+.....+...-+-..+ .-..|.++|.| |.++
T Consensus 259 ~~~L~~aGF~~i~~~~~~~t~~~eqr~t~w~~~~sl~~fld~~~~~~t~eg~pap~r~ 316 (322)
T PRK15068 259 KNWLERAGFKDVRIVDVSVTTTEEQRKTEWMTTESLADFLDPNDPSKTIEGYPAPKRA 316 (322)
T ss_pred HHHHHHcCCceEEEEeCCCCCccccccccCcccCcHhhcCCCCCCCCcccCCCCccEE
Confidence 99999999999999887765443333322221111 12256777765 5544
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=153.35 Aligned_cols=143 Identities=20% Similarity=0.321 Sum_probs=113.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC-CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP-FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~-~~~~~~D~i~~~~~ 184 (290)
++.+|||+|||+|.++..+++. +.+|+++|+|+++++.|+++... .+++++++|+.+++ +.+++||+|++..+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 5689999999999999999987 68999999999999999887432 46789999987653 55678999999999
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhh----HH----H---------hhcCCCHHHHHHHHHHCCCc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF----AD----V---------WMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~----~~----~---------~~~~~~~~~~~~ll~~aGf~ 247 (290)
++|++++..+++++.++|||||.+++.............+ .. . .....+.+++.++|+++||+
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~ 201 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQ 201 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCe
Confidence 9999999999999999999999999876554322111100 00 0 01235789999999999999
Q ss_pred EEEEEEc
Q 022929 248 DVQLKRI 254 (290)
Q Consensus 248 ~v~~~~~ 254 (290)
+++..-+
T Consensus 202 ~~~~~gi 208 (255)
T PRK11036 202 IMGKTGV 208 (255)
T ss_pred EeeeeeE
Confidence 8865543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-20 Score=146.26 Aligned_cols=133 Identities=29% Similarity=0.369 Sum_probs=104.9
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.++.+|||||||+|.++..+++. +.+++|+|+++.+++. .+......+....+.++++||+|+|..+++|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 37899999999999999999777 5699999999999988 23334444333444567789999999999999
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh-------hHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY-------FADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
+++..+++++.++|||||.+++.++.......... ....+..+++.++|.++++++||++++
T Consensus 92 ~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 92 PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999887642111110 101223467999999999999999875
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-19 Score=150.43 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=119.8
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++|||||||+|..+..+++.+++.+++|+|+|+++++.++++.. ..+++++..|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 47999999999999999998877899999999999999988743 24578999998665654 46999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccccccc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVR 263 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~ 263 (290)
+++...+++++.++|+|||.+++.+......... ........+.+..+|.++++++||++++...++.++...+|
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l~ 154 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-EHEETTSYLVTREEWAELLARNNLRVVEGVDASLEIANFLY 154 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-cccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhcc
Confidence 9999999999999999999999987643211000 00011122568899999999999999999998877654433
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=130.61 Aligned_cols=95 Identities=37% Similarity=0.571 Sum_probs=86.8
Q ss_pred EEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHH
Q 022929 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG 194 (290)
Q Consensus 115 LDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~ 194 (290)
||+|||+|..+..+++. ++.+++++|+++++++.++++....++.+...|+.++|+++++||+|++.++++|++++.++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 89999999999999999 78999999999999999999988778889999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCEEEE
Q 022929 195 IREAYRVLKLGGKACI 210 (290)
Q Consensus 195 l~~~~~~L~pgG~l~i 210 (290)
++++.|+|||||.+++
T Consensus 80 l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCcCeEEeC
Confidence 9999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=147.41 Aligned_cols=149 Identities=23% Similarity=0.271 Sum_probs=118.5
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~ 174 (290)
......+++.+.. .++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ...++++|++.++++++
T Consensus 28 ~~~a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~--~~~~~~~d~~~~~~~~~ 102 (251)
T PRK10258 28 RQSADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA--ADHYLAGDIESLPLATA 102 (251)
T ss_pred HHHHHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--CCCEEEcCcccCcCCCC
Confidence 3344455555543 25689999999999999988875 6899999999999999998754 35688999999888888
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-hhH-----HHhhcCCCHHHHHHHHHHCCCcE
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-YFA-----DVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
+||+|+++.++++.+++..++.++.++|+|||.+++.++......... .+. .....+.+.+++.+++...|++.
T Consensus 103 ~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 103 TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred cEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 999999999999999999999999999999999999887665433221 111 11234678999999999988863
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=144.95 Aligned_cols=170 Identities=21% Similarity=0.178 Sum_probs=120.9
Q ss_pred HHHHHhHHhHhhhcccC------CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHH
Q 022929 73 AFWFYRFLSIVYDHVIN------PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 146 (290)
Q Consensus 73 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~ 146 (290)
....|+..+..|+.... ...|...+...+..... ++.+|||+|||+|.++..+++.. +.+|+|+|+|++|
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~---~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~M 86 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCG---RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENM 86 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcC---CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHH
Confidence 34667777778875421 11233333333322222 46899999999999999999886 5799999999999
Q ss_pred HHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh-------
Q 022929 147 LAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW------- 219 (290)
Q Consensus 147 ~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------- 219 (290)
++.|+++. .++++|++++|+++++||+|++..+++|++++++.++++.++|||... +.+...+...
T Consensus 87 l~~a~~~~-----~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~--ile~~~p~~~~~~~~~~ 159 (226)
T PRK05785 87 LKMNLVAD-----DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVG--FIAMGKPDNVIKRKYLS 159 (226)
T ss_pred HHHHHhcc-----ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceE--EEEeCCCCcHHHHHHHH
Confidence 99998642 467899999999999999999999999999999999999999999421 2222222111
Q ss_pred -------------------HhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 220 -------------------LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 220 -------------------~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
...+.......+++.+++.++|+++| ..++.+.+
T Consensus 160 ~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~ 212 (226)
T PRK05785 160 FYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEER 212 (226)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEc
Confidence 01112223345678999999999974 55666554
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=152.68 Aligned_cols=173 Identities=19% Similarity=0.249 Sum_probs=125.0
Q ss_pred ccCCCcccHHHHHh-hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh---hhC-CCCCceE
Q 022929 87 VINPGHWTEDMRDD-ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKE-PLKECKI 161 (290)
Q Consensus 87 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~---~~~-~~~~v~~ 161 (290)
...+.+|...+... ++..+... ++++|||||||+|.++..++... ...|+|+|+|+.++..++ +.. ...++.+
T Consensus 98 ~~~~~e~~s~~~~~~~l~~l~~~-~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~ 175 (314)
T TIGR00452 98 IKIDSEWRSDIKWDRVLPHLSPL-KGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAIL 175 (314)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCC-CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEE
Confidence 34445666665543 44444433 68999999999999998888773 357999999999887543 222 2346788
Q ss_pred EEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch------hHhhh--hHHHhhcCCC
Q 022929 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRY--FADVWMLFPK 233 (290)
Q Consensus 162 ~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~------~~~~~--~~~~~~~~~~ 233 (290)
...++.+++... +||+|+|..+++|.+++...+++++++|+|||.+++.+...... ...++ +... ...++
T Consensus 176 ~~~~ie~lp~~~-~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv-~flpS 253 (314)
T TIGR00452 176 EPLGIEQLHELY-AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV-YFIPS 253 (314)
T ss_pred EECCHHHCCCCC-CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc-ccCCC
Confidence 888888877544 69999999999999999999999999999999999875432110 01111 1111 12468
Q ss_pred HHHHHHHHHHCCCcEEEEEEcCcccccccc
Q 022929 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVR 263 (290)
Q Consensus 234 ~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~ 263 (290)
..++.++|+++||+.+++...........+
T Consensus 254 ~~~L~~~L~~aGF~~V~i~~~~~tt~~eqr 283 (314)
T TIGR00452 254 VSALKNWLEKVGFENFRILDVLKTTPEEQR 283 (314)
T ss_pred HHHHHHHHHHCCCeEEEEEeccCCCHHHhh
Confidence 999999999999999999887665443333
|
Known examples to date are restricted to the proteobacteria. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=145.00 Aligned_cols=161 Identities=25% Similarity=0.336 Sum_probs=124.3
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhh--CCCCCceEEEcCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK--EPLKECKIVEGDAEDLP 170 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~--~~~~~v~~~~~d~~~l~ 170 (290)
...++..++...... ++.+|||+|||+|.++..+++.+ +..+++++|+|+.+++.++++ ....++.+...|+..++
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 4 FRRYRARTFELLAVQ-PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHHcCCC-CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC
Confidence 344555555655553 78899999999999999999887 568999999999999999887 23356889999998888
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch--------hHhhhhHHHh---hcCCCHHHHHH
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF--------WLSRYFADVW---MLFPKEEEYIE 239 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~ 239 (290)
+.+++||+|++..+++|++++..+++++.++|+|||.+++.++..... .......... ....+..++.+
T Consensus 83 ~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPG 162 (241)
T ss_pred CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 878889999999999999999999999999999999999887543211 1111111111 12234678999
Q ss_pred HHHHCCCcEEEEEEcC
Q 022929 240 WFQKAGFKDVQLKRIG 255 (290)
Q Consensus 240 ll~~aGf~~v~~~~~~ 255 (290)
+|+++||+.++++...
T Consensus 163 ~l~~aGf~~~~~~~~~ 178 (241)
T PRK08317 163 LFREAGLTDIEVEPYT 178 (241)
T ss_pred HHHHcCCCceeEEEEE
Confidence 9999999988776643
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=140.69 Aligned_cols=135 Identities=27% Similarity=0.461 Sum_probs=106.9
Q ss_pred CCCEEEEEcCccchhHHHHH-hhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCC--CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLP--FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~--~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|.++..++ +..++.+++|+|+|+++++.|+++ ....+++|.++|+.+++ ++ ++||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 67899999999999999999 456789999999999999999985 34458999999998877 54 6799999999
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh------hhhHHHhhcCC---CHHHHHHHHHHCC
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS------RYFADVWMLFP---KEEEYIEWFQKAG 245 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~ll~~aG 245 (290)
+++++.++..+++++.++|+++|.+++.+......... ......+.... ..++|..+|+++|
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGNDKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC---CCCGHHHHHHHTT
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHHHHHhcC
Confidence 99999999999999999999999999987762211111 11112222222 6788888998887
|
... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-19 Score=151.59 Aligned_cols=161 Identities=22% Similarity=0.196 Sum_probs=113.6
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~ 172 (290)
..+.+++.+... +|.+|||||||.|.++..+++.+ +++|+|+++|++..+.++++.. .+++++...|..+++.
T Consensus 50 k~~~~~~~~~l~-~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLK-PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHhCCC-CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-
Confidence 345666777664 99999999999999999999998 7899999999999999987643 2458899999877654
Q ss_pred CCCccEEEecCcccccC--CHHHHHHHHHhccCCCCEEEEEccCCCchh-----------HhhhhHHHhhcCCCHHHHHH
Q 022929 173 TDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFW-----------LSRYFADVWMLFPKEEEYIE 239 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 239 (290)
+||.|++..+++|+. +...+++++.++|||||.+++......... +.+.+-. ....++..++..
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFP-gg~lps~~~~~~ 203 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFP-GGYLPSLSEILR 203 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTST-TS---BHHHHHH
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCC-CCCCCCHHHHHH
Confidence 699999999999994 567999999999999999998654433211 1111111 113467899999
Q ss_pred HHHHCCCcEEEEEEcCcccccccc
Q 022929 240 WFQKAGFKDVQLKRIGPKWYRGVR 263 (290)
Q Consensus 240 ll~~aGf~~v~~~~~~~~~~~~~~ 263 (290)
.++++||++.+++.++.+|.....
T Consensus 204 ~~~~~~l~v~~~~~~~~hY~~Tl~ 227 (273)
T PF02353_consen 204 AAEDAGLEVEDVENLGRHYARTLR 227 (273)
T ss_dssp HHHHTT-EEEEEEE-HHHHHHHHH
T ss_pred HHhcCCEEEEEEEEcCcCHHHHHH
Confidence 999999999999999888765443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.6e-18 Score=141.21 Aligned_cols=158 Identities=30% Similarity=0.409 Sum_probs=123.7
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCCCc
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~~~ 176 (290)
..++...... ++.+|||+|||+|..+..+++..+. .+++++|+++.+++.++++.. ..++.+..+|+.+.++..++|
T Consensus 29 ~~~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (223)
T TIGR01934 29 RRAVKLIGVF-KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSF 107 (223)
T ss_pred HHHHHHhccC-CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcE
Confidence 3444444332 6789999999999999999998765 699999999999999988754 346889999998888777789
Q ss_pred cEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh---------Hhh-----------------hhHHHhhc
Q 022929 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW---------LSR-----------------YFADVWML 230 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~---------~~~-----------------~~~~~~~~ 230 (290)
|+|++..++++.+++..+++++.+.|+|||.+++.+...+... ... .....+..
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRA 187 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHh
Confidence 9999999999999999999999999999999998765432210 000 01111234
Q ss_pred CCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 231 FPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 231 ~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
+++.++|.++|+++||++++++.+...
T Consensus 188 ~~~~~~~~~~l~~aGf~~~~~~~~~~~ 214 (223)
T TIGR01934 188 FPSQEELAAMLKEAGFEEVRYRSLTFG 214 (223)
T ss_pred CCCHHHHHHHHHHcCCccceeeeeecc
Confidence 568899999999999999988876543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=144.47 Aligned_cols=146 Identities=29% Similarity=0.428 Sum_probs=114.9
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|+++. ...+++++.+|+.++++++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 378999999999999888777664 3468999999999999999863 235788999999998888888999999999
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH--HHh----hcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA--DVW----MLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+++.++...+++++.++|||||.+++.+............. ..+ ....+.+++.++|+++||..+++...
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEec
Confidence 99999999999999999999999999765432211111100 111 12357889999999999998877554
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-18 Score=145.14 Aligned_cols=142 Identities=27% Similarity=0.341 Sum_probs=119.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
.+.+|||+|||+|.++..+++..+..+++++|+++.+++.++++.. .++.++.+|+.+.++++++||+|++..+++|..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-CCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 4579999999999999999999888889999999999999988765 478899999998888888899999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-YFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
++..+++++.++|+|||.+++.++......... ........+.+.+++.+++.++ |..+.+..
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 999999999999999999999877665432211 1222334567899999999998 88766544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=142.42 Aligned_cols=148 Identities=24% Similarity=0.304 Sum_probs=113.5
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCcc
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D 177 (290)
...++..+... ++.+|||||||+|.++..+++.+++.+++|+|+|+.+++.++++. .+++++.+|+..+. +..+||
T Consensus 20 ~~~ll~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--~~~~~~~~d~~~~~-~~~~fD 95 (258)
T PRK01683 20 ARDLLARVPLE-NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--PDCQFVEADIASWQ-PPQALD 95 (258)
T ss_pred HHHHHhhCCCc-CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--CCCeEEECchhccC-CCCCcc
Confidence 33444544443 678999999999999999999888899999999999999999875 36889999997754 345799
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh---------hH----HH---hhcCCCHHHHHHHH
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY---------FA----DV---WMLFPKEEEYIEWF 241 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~---------~~----~~---~~~~~~~~~~~~ll 241 (290)
+|++..+++|+++...+++++.++|+|||.+++..+.......... +. .. ...+.+..++.+++
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l 175 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDAL 175 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999887543211000000 00 00 11235778899999
Q ss_pred HHCCCcEE
Q 022929 242 QKAGFKDV 249 (290)
Q Consensus 242 ~~aGf~~v 249 (290)
.++|+.+.
T Consensus 176 ~~~g~~v~ 183 (258)
T PRK01683 176 APAACRVD 183 (258)
T ss_pred HhCCCcee
Confidence 99998753
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=142.40 Aligned_cols=161 Identities=24% Similarity=0.278 Sum_probs=126.6
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~ 173 (290)
.+.+++.+.+. +|++|||||||.|.+++.+++.+ +.+|+|+++|+++.+.++++.. ..++++...|..+++
T Consensus 61 ~~~~~~kl~L~-~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 61 LDLILEKLGLK-PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHhcCCC-CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 44556666665 99999999999999999999998 7999999999999999998643 236888899988764
Q ss_pred CCccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCchhH---hhhhHH---HhhcCCCHHHHHHHHHHCC
Q 022929 174 DYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWL---SRYFAD---VWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~ll~~aG 245 (290)
+.||.|+|..+++|+.. ...+++.+.++|+|||.+++-+...+.... ..++.. .....++..++.+...++|
T Consensus 136 e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~ 215 (283)
T COG2230 136 EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAG 215 (283)
T ss_pred cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcC
Confidence 33999999999999976 789999999999999999886544333111 111111 0123467899999999999
Q ss_pred CcEEEEEEcCcccccccc
Q 022929 246 FKDVQLKRIGPKWYRGVR 263 (290)
Q Consensus 246 f~~v~~~~~~~~~~~~~~ 263 (290)
|.+.+++.++.++.....
T Consensus 216 ~~v~~~~~~~~hYa~Tl~ 233 (283)
T COG2230 216 FVVLDVESLRPHYARTLR 233 (283)
T ss_pred cEEehHhhhcHHHHHHHH
Confidence 999999999988775543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-18 Score=144.00 Aligned_cols=138 Identities=20% Similarity=0.286 Sum_probs=106.3
Q ss_pred CCCEEEEEcCccchhHHHHHhh--CCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH--VDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~--~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
++.+|||||||+|..+..+++. .|+.+++|+|+|+.|++.|+++.. ..+++++++|+.+++++ .+|+|++..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 6789999999999999888873 467999999999999999998753 23689999999887764 399999999
Q ss_pred cccccCCH--HHHHHHHHhccCCCCEEEEEccCCCc-hhHhh----hhH--------------H---H---hhcCCCHHH
Q 022929 184 SIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPT-FWLSR----YFA--------------D---V---WMLFPKEEE 236 (290)
Q Consensus 184 ~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~~----~~~--------------~---~---~~~~~~~~~ 236 (290)
+++++++. ..+++++.+.|||||.+++.+..... ..... ... . . .....+.++
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 99998753 47999999999999999998744221 00000 000 0 0 011247899
Q ss_pred HHHHHHHCCCcEE
Q 022929 237 YIEWFQKAGFKDV 249 (290)
Q Consensus 237 ~~~ll~~aGf~~v 249 (290)
..++|+++||+.+
T Consensus 214 ~~~~L~~aGF~~v 226 (247)
T PRK15451 214 HKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHcCchhH
Confidence 9999999999753
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-18 Score=143.70 Aligned_cols=200 Identities=22% Similarity=0.291 Sum_probs=136.3
Q ss_pred ccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh---hhCCCCC-ceEE
Q 022929 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKE-CKIV 162 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~---~~~~~~~-v~~~ 162 (290)
+.++.+|...+....+...-..-.+++|||||||+|.++..++.. +...|+|+|.+.......+ +...... +..+
T Consensus 92 i~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l 170 (315)
T PF08003_consen 92 IHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL 170 (315)
T ss_pred EeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc
Confidence 345556766665555543221227899999999999999999988 3567999999987655432 3332222 3333
Q ss_pred EcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh------Hhhh--hHHHhhcCCCH
Q 022929 163 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW------LSRY--FADVWMLFPKE 234 (290)
Q Consensus 163 ~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~~~~--~~~~~~~~~~~ 234 (290)
...++++|. .+.||+|+|..|+.|..+|-..|++++..|+|||.+++.+...+... ..++ +.+.| ..+|.
T Consensus 171 plgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~-FiPs~ 248 (315)
T PF08003_consen 171 PLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW-FIPSV 248 (315)
T ss_pred Ccchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE-EeCCH
Confidence 356678776 56799999999999999999999999999999999998765433211 1111 11111 23689
Q ss_pred HHHHHHHHHCCCcEEEEEEcCcccccccccccceeeeE----E---EEecCCCCCCCccccc
Q 022929 235 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCS----V---TGVKPASGDSPLQVTI 289 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~----~---~a~k~~~~~~~~~~~~ 289 (290)
..+.++++++||+.+++.....+.....+.+.-+-+-+ + -..|.++|.|.=++++
T Consensus 249 ~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~~~SL~dFLDp~d~~~TiEGyPAP~Ra~ 310 (315)
T PF08003_consen 249 AALKNWLERAGFKDVRCVDVSPTTIEEQRKTDWMDFQSLEDFLDPNDPSKTIEGYPAPKRAY 310 (315)
T ss_pred HHHHHHHHHcCCceEEEecCccCCHHHhccCCCcCcccHHHhcCCCCCCCcccCCCCceEEE
Confidence 99999999999999999888776666665543332111 1 1246777765444443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=137.44 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=103.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++... .++++...|+.+++++ ++||+|++..+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchh
Confidence 5689999999999999999987 68999999999999999876432 3578888999877664 4699999999998
Q ss_pred ccC--CHHHHHHHHHhccCCCCEEEEEccCCC-chhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 187 YWP--DPQRGIREAYRVLKLGGKACIIGPVYP-TFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 187 ~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+++ +...+++++.++|+|||.+++...... .... .......++.+++.+.++ ||++++...
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~----~~~~~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC----TVGFPFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC----CCCCCCccCHHHHHHHhC--CCeEEEeeC
Confidence 876 346899999999999999765432211 1100 001112357889999887 999888754
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=140.98 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=108.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|..+..+++.. |+.+++|+|+|+.+++.|+++.. ..+++++++|+.+++++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 67899999999999999998864 67899999999999999987743 23689999999888765 389999999
Q ss_pred cccccCC--HHHHHHHHHhccCCCCEEEEEccCCCch-hHhhhhHHH------------------------hhcCCCHHH
Q 022929 184 SIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFADV------------------------WMLFPKEEE 236 (290)
Q Consensus 184 ~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~~~~~~------------------------~~~~~~~~~ 236 (290)
+++|+++ ...+++++.++|+|||.+++.+...... .....+... .....+.++
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~ 210 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIET 210 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHH
Confidence 9999864 4679999999999999999987654321 111100000 112458899
Q ss_pred HHHHHHHCCCcEEE
Q 022929 237 YIEWFQKAGFKDVQ 250 (290)
Q Consensus 237 ~~~ll~~aGf~~v~ 250 (290)
+.++++++||..++
T Consensus 211 ~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 211 HKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHcCCchHH
Confidence 99999999997443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-18 Score=156.35 Aligned_cols=181 Identities=19% Similarity=0.120 Sum_probs=139.5
Q ss_pred ccccCCCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC
Q 022929 53 SLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV 132 (290)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~ 132 (290)
.+.+...+....++.+++.+...||+....+....+.|++.++.+.+.+++.+. ++.+|||+|||+|.++..++...
T Consensus 197 ~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---~~~rVLDLGcGSG~IaiaLA~~~ 273 (423)
T PRK14966 197 RADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---ENGRVWDLGTGSGAVAVTVALER 273 (423)
T ss_pred HHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---CCCEEEEEeChhhHHHHHHHHhC
Confidence 344444555567788999999999998888888999999999999998887654 45799999999999999999887
Q ss_pred CCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCC-CCCCccEEEecCccc-------------ccC-------
Q 022929 133 DAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPF-PTDYADRYVSAGSIE-------------YWP------- 189 (290)
Q Consensus 133 ~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~-~~~~~D~i~~~~~l~-------------~~~------- 189 (290)
++.+++++|+|+++++.|+++... .+++++++|+.+..+ ..++||+|+|+--.. +.|
T Consensus 274 p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG 353 (423)
T PRK14966 274 PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDF 353 (423)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCC
Confidence 889999999999999999988542 358899999865332 235799999953210 100
Q ss_pred -C----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 190 -D----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 190 -~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+ .+.+++.+.+.|+|||.+++..... ..+.+.+++++.||..+++..
T Consensus 354 ~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~-----------------Q~e~V~~ll~~~Gf~~v~v~k 405 (423)
T PRK14966 354 SDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD-----------------QGAAVRGVLAENGFSGVETLP 405 (423)
T ss_pred CchHHHHHHHHHHHHHhcCCCcEEEEEECcc-----------------HHHHHHHHHHHCCCcEEEEEE
Confidence 1 2367788889999999987754221 357889999999998766643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-18 Score=127.49 Aligned_cols=102 Identities=26% Similarity=0.398 Sum_probs=86.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCC-CCCCCCCCCccEEEecC-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDA-EDLPFPTDYADRYVSAG- 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~-~~l~~~~~~~D~i~~~~- 183 (290)
|+.+|||||||+|.++..+++..++.+++|+|+|+++++.++++. ...++++++.|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999777999999999999999999886 346899999999 444443 3499999999
Q ss_pred ccccc---CCHHHHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYW---PDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
++++. ++..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55534 334689999999999999999875
|
... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-18 Score=162.62 Aligned_cols=211 Identities=19% Similarity=0.167 Sum_probs=154.3
Q ss_pred ccccCCcCCCCCCccccccCCceeeeeecccccCCCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhcc
Q 022929 24 SFLASDFHGKHIPKLSLIAKPRTVQSIKCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALE 103 (290)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (290)
.++.....+.+...+.++............+.....+....++.+|+.+..+||+....+...+++|++.++.+++.++.
T Consensus 29 ~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~ 108 (506)
T PRK01544 29 RILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQ 108 (506)
T ss_pred HHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHH
Confidence 34455555555555555444433333334455455555667899999999999999999999999999999999998876
Q ss_pred ccCC-----------------------CCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----
Q 022929 104 PADL-----------------------SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---- 156 (290)
Q Consensus 104 ~~~~-----------------------~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---- 156 (290)
.+.. ..++.+|||+|||+|.++..++...|+.+++++|+|+.+++.|+++...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~ 188 (506)
T PRK01544 109 CHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT 188 (506)
T ss_pred HhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc
Confidence 5320 1134689999999999999999888889999999999999999987432
Q ss_pred CCceEEEcCCCCCCCCCCCccEEEecC--------------cccccCC------------HHHHHHHHHhccCCCCEEEE
Q 022929 157 KECKIVEGDAEDLPFPTDYADRYVSAG--------------SIEYWPD------------PQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 157 ~~v~~~~~d~~~l~~~~~~~D~i~~~~--------------~l~~~~~------------~~~~l~~~~~~L~pgG~l~i 210 (290)
.++.++.+|+.+ .++.++||+|+++- +..|.|. ...+++.+.++|+|||.+++
T Consensus 189 ~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 189 DRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred cceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 357889999754 23445799999942 1222221 23578889999999999987
Q ss_pred EccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 211 IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
... . ...+.+.+++.+.||..+++.
T Consensus 268 Eig-~----------------~q~~~v~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 268 EIG-F----------------KQEEAVTQIFLDHGYNIESVY 292 (506)
T ss_pred EEC-C----------------chHHHHHHHHHhcCCCceEEE
Confidence 532 1 135678899999999876654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=138.54 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=109.7
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----C----CceEEEcCCCCCCCCCCCccEEEe
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~----~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
|.+|||+|||.|.++..|++. +..|+|+|+++++++.|++.... . ++++...|++.+. +.||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeee
Confidence 478999999999999999999 89999999999999999987321 1 2455666665542 34999999
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCc------hhHhhhhHH-------HhhcCCCHHHHHHHHHHCCCcE
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT------FWLSRYFAD-------VWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
..+++|..+++.+++.+.+.|||||.+++.+..... ....+.... .|..|.++.++..++..+|+++
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcch
Confidence 999999999999999999999999999998765431 222222222 3456789999999999999987
Q ss_pred EEEEE
Q 022929 249 VQLKR 253 (290)
Q Consensus 249 v~~~~ 253 (290)
..+.-
T Consensus 245 ~~v~G 249 (282)
T KOG1270|consen 245 NDVVG 249 (282)
T ss_pred hhhhc
Confidence 66543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-18 Score=150.06 Aligned_cols=176 Identities=21% Similarity=0.229 Sum_probs=134.1
Q ss_pred CCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeE
Q 022929 58 SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNV 137 (290)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v 137 (290)
..+.....+.+++.+..+||+....+...++.|++.++.+...++.......+..+|||+|||+|.++..++...++.++
T Consensus 62 ~~~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v 141 (284)
T TIGR00536 62 VLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEV 141 (284)
T ss_pred HHHHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEE
Confidence 33334447888898888999887778888999999999999988765432223379999999999999999999888899
Q ss_pred EEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEec-------------CcccccC-----------
Q 022929 138 TILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSA-------------GSIEYWP----------- 189 (290)
Q Consensus 138 ~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~-------------~~l~~~~----------- 189 (290)
+++|+|+.+++.|+++... .+++++.+|+.+ +++..+||+|+++ .+..|.|
T Consensus 142 ~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl 220 (284)
T TIGR00536 142 IAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGL 220 (284)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHH
Confidence 9999999999999987432 248899999866 4444479999995 2333333
Q ss_pred -CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH-HCCCcEEEE
Q 022929 190 -DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ-KAGFKDVQL 251 (290)
Q Consensus 190 -~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~aGf~~v~~ 251 (290)
....+++++.++|+|||.+++..... ..+.+.+++. +.||..+++
T Consensus 221 ~~~~~ii~~a~~~L~~gG~l~~e~g~~-----------------q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 221 NILRQIIELAPDYLKPNGFLVCEIGNW-----------------QQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEECcc-----------------HHHHHHHHHHhcCCCceeEE
Confidence 23578899999999999998865322 2356777777 468876555
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-16 Score=126.65 Aligned_cols=124 Identities=23% Similarity=0.259 Sum_probs=102.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||+|||+|..+..++...++.+|+++|+|+++++.|+++.. ..+++++.+|+.+++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 5899999999999999999988788999999999999999987632 2358999999988776 66899999875
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
..+.+.+++.+.++|+|||.+++..... ...++.++.+..|+.+..+....
T Consensus 121 -~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 121 -VASLSDLVELCLPLLKPGGRFLALKGRD-----------------PEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------hHHHHHHHHHhcCceEeeeEEEe
Confidence 3567889999999999999999875432 24567788888899877776653
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=135.89 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=109.2
Q ss_pred CCCEEEEEcCccchhHHHHHhh----CCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..+++. .++.+++|+|+|+++++.|+++....++.+...+...++..+++||+|+++.++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 6789999999999998888753 234699999999999999998876667888888777777667789999999999
Q ss_pred cccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhh----------------hHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 186 EYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRY----------------FADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 186 ~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
||++++ ..+++++.++++ |.+++.+........... ....+..+++.+++.+++++ ||+
T Consensus 140 hh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~ 216 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWR 216 (232)
T ss_pred ecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCe
Confidence 999886 369999999998 666666655442111000 01223356799999999999 998
Q ss_pred EEEEEEcC
Q 022929 248 DVQLKRIG 255 (290)
Q Consensus 248 ~v~~~~~~ 255 (290)
+.....+.
T Consensus 217 ~~~~~~~~ 224 (232)
T PRK06202 217 VERQWPFR 224 (232)
T ss_pred EEecccee
Confidence 77665443
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-17 Score=135.64 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=102.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... ++.+...|+...+++ ++||+|++..++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 4679999999999999999987 689999999999999987664332 356677787665554 46999999999998
Q ss_pred cCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 188 WPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 188 ~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++. ...+++++.++|+|||.+++.+......... .......++.+++.+++. +|+++.....
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~---~~~~~~~~~~~el~~~f~--~~~~~~~~e~ 170 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC---HMPFSFTFKEDELRQYYA--DWELLKYNEA 170 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC---CCCcCccCCHHHHHHHhC--CCeEEEeecc
Confidence 853 4589999999999999976654322111000 011123458899999987 6988888744
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=133.96 Aligned_cols=145 Identities=21% Similarity=0.243 Sum_probs=112.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC-CCCCCccEEEecCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~-~~~~~~D~i~~~~~l 185 (290)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.++++... .++++...|..+.+ ..+++||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 36889999999999999988886 67899999999999999876432 24677778776654 344679999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh------hhh-------HHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS------RYF-------ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
++.+++..+++.+.++|+|||.+++..+........ ... ...+..+++.++|.++++++||++++..
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 999999999999999999999999886543221100 000 0112345688999999999999999886
Q ss_pred EcC
Q 022929 253 RIG 255 (290)
Q Consensus 253 ~~~ 255 (290)
...
T Consensus 205 ~~~ 207 (233)
T PRK05134 205 GLH 207 (233)
T ss_pred eEE
Confidence 544
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=137.21 Aligned_cols=144 Identities=18% Similarity=0.206 Sum_probs=101.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--------CCceEEEcCCCCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .++.|...|+.++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 5789999999999999999987 68999999999999999987532 2467888887654 357999999
Q ss_pred cCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh--------hcCCCHHHHHHHHHHCCCcEEEE
Q 022929 182 AGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW--------MLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 182 ~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
..+++|+++.. .+++.+.+ +.++|.++...+..............+ ..+.+.++++++++++||++...
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 99999887643 46666664 455555433222211111111111111 12347899999999999998887
Q ss_pred EEcCcccc
Q 022929 252 KRIGPKWY 259 (290)
Q Consensus 252 ~~~~~~~~ 259 (290)
+.....+|
T Consensus 298 ~~~~~~~y 305 (315)
T PLN02585 298 EMTATQFY 305 (315)
T ss_pred EEeeccee
Confidence 76665544
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-17 Score=145.81 Aligned_cols=209 Identities=17% Similarity=0.152 Sum_probs=145.0
Q ss_pred cccCCcCCCCCCccccccCCceeeeeecccccCCCCCC-chhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhcc
Q 022929 25 FLASDFHGKHIPKLSLIAKPRTVQSIKCSLSATSRPAS-QPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALE 103 (290)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (290)
++.....+.+...+.++............+.....+.. ..++.+|+.+..+|++....+...++.|++.++.+....+.
T Consensus 35 ~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~ 114 (284)
T TIGR03533 35 YLVLHALHLPLDILEPFLDARLTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFA 114 (284)
T ss_pred HHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHH
Confidence 33444444444444444333332222223333333333 45688999999999998888888999999999888877765
Q ss_pred ccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEE
Q 022929 104 PADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 104 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
......++.+|||+|||+|.++..+++..++.+++++|+|+.+++.|+++... .+++++.+|+.+ ++++++||+|
T Consensus 115 ~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~I 193 (284)
T TIGR03533 115 PWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLI 193 (284)
T ss_pred HHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEE
Confidence 32111245799999999999999999998888999999999999999987532 358899999854 3345579999
Q ss_pred EecCc-------------ccccCC------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCH
Q 022929 180 VSAGS-------------IEYWPD------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (290)
Q Consensus 180 ~~~~~-------------l~~~~~------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (290)
+++-- +.+.+. ...+++.+.++|+|||.+++.... +.
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~------------------~~ 255 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN------------------SM 255 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------------------CH
Confidence 98511 111111 246789999999999999876431 23
Q ss_pred HHHHHHHHHCCCcEEEEE
Q 022929 235 EEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~ 252 (290)
+.+.+++.++||.-....
T Consensus 256 ~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 256 EALEEAYPDVPFTWLEFE 273 (284)
T ss_pred HHHHHHHHhCCCceeeec
Confidence 567888888998755443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-16 Score=136.62 Aligned_cols=148 Identities=22% Similarity=0.307 Sum_probs=111.6
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCc
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~ 176 (290)
+++.... +++.+|||||||+|.++..+++.+|+.+++++|. +.+++.++++.. .++++++.+|+.+.+++. +
T Consensus 141 l~~~~~~-~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~ 216 (306)
T TIGR02716 141 LLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--A 216 (306)
T ss_pred HHHHcCC-CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--C
Confidence 3344433 3678999999999999999999999999999998 789998887643 246899999997656543 7
Q ss_pred cEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCch---hHhhhhHH--------HhhcCCCHHHHHHHHHH
Q 022929 177 DRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF---WLSRYFAD--------VWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 177 D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~ll~~ 243 (290)
|+|++.+++|++++. ..+++++.+.|+|||++++.+...... ........ ....+.+.+++.++|++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~ 296 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES 296 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHH
Confidence 999999999988765 479999999999999999987643221 11111110 01123457999999999
Q ss_pred CCCcEEEEE
Q 022929 244 AGFKDVQLK 252 (290)
Q Consensus 244 aGf~~v~~~ 252 (290)
+||+.+++.
T Consensus 297 aGf~~v~~~ 305 (306)
T TIGR02716 297 LGYKDVTMV 305 (306)
T ss_pred cCCCeeEec
Confidence 999977653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-16 Score=131.19 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=114.3
Q ss_pred HHHhhccccCC-CCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCC
Q 022929 97 MRDDALEPADL-SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF 171 (290)
Q Consensus 97 ~~~~~l~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~ 171 (290)
++..++..+.. ..++.+|||+|||+|.++..+++. +.+++|+|+|++++..|+++... .++++.+.|+..++
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 33444444331 236789999999999999999886 67999999999999999887432 36889999998765
Q ss_pred CCCCccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh--------hcCCCHHHHHHHH
Q 022929 172 PTDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW--------MLFPKEEEYIEWF 241 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ll 241 (290)
++||+|++..+++|++. ...+++++.+++++++.+.+.. ..............+ ..+++.+++.+++
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 194 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP-KTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERAL 194 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC-CchHHHHHHHHHhhCcCcccccceEEecHHHHHHHH
Confidence 56999999999988864 4578899999888765554432 211111111111111 1235889999999
Q ss_pred HHCCCcEEEEEEcCcccccc
Q 022929 242 QKAGFKDVQLKRIGPKWYRG 261 (290)
Q Consensus 242 ~~aGf~~v~~~~~~~~~~~~ 261 (290)
+++||+++........++.+
T Consensus 195 ~~~Gf~v~~~~~~~~~~~~~ 214 (219)
T TIGR02021 195 GELGWKIVREGLVSTGFYNS 214 (219)
T ss_pred HHcCceeeeeecccccchhh
Confidence 99999999998777665543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=123.42 Aligned_cols=138 Identities=22% Similarity=0.323 Sum_probs=105.7
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~ 171 (290)
+.++..++..+... ++.+|||+|||+|.++..+++..++.+++++|+|+.+++.++++.. ..+++++.+|... ++
T Consensus 17 ~~~r~~~~~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~ 94 (187)
T PRK08287 17 EEVRALALSKLELH-RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL 94 (187)
T ss_pred HHHHHHHHHhcCCC-CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc
Confidence 34444455555543 7789999999999999999998888899999999999999987642 2468888888743 33
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+ ++||+|++..... ....+++.+.+.|+|||.+++..... .+.+++.+++++.||+.+++
T Consensus 95 ~-~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~----------------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 95 P-GKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL----------------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred C-cCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH----------------hhHHHHHHHHHHCCCCcceE
Confidence 3 4699999876544 35678999999999999998854321 14567889999999987776
Q ss_pred EEc
Q 022929 252 KRI 254 (290)
Q Consensus 252 ~~~ 254 (290)
..+
T Consensus 155 ~~~ 157 (187)
T PRK08287 155 VQL 157 (187)
T ss_pred EEE
Confidence 554
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-16 Score=141.83 Aligned_cols=154 Identities=21% Similarity=0.157 Sum_probs=115.7
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEE
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYV 180 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~ 180 (290)
+++.+.. .++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|+++....++++...|..++ +++||+|+
T Consensus 159 l~~~l~l-~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Iv 233 (383)
T PRK11705 159 ICRKLQL-KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIV 233 (383)
T ss_pred HHHHhCC-CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEE
Confidence 3444444 378999999999999999999875 679999999999999999887544578888888664 35799999
Q ss_pred ecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCch------hHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 181 SAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 181 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
+..+++|+.. ...+++++.++|||||.+++.+...... +..+++. ....+++.+++.+.++ .||.+.+++
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yif-p~g~lps~~~i~~~~~-~~~~v~d~~ 311 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIF-PNGCLPSVRQIAQASE-GLFVMEDWH 311 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeec-CCCcCCCHHHHHHHHH-CCcEEEEEe
Confidence 9999999854 4689999999999999999976543321 1111100 0122457788877766 689999998
Q ss_pred EcCcccccc
Q 022929 253 RIGPKWYRG 261 (290)
Q Consensus 253 ~~~~~~~~~ 261 (290)
.++.+|...
T Consensus 312 ~~~~hy~~T 320 (383)
T PRK11705 312 NFGADYDRT 320 (383)
T ss_pred cChhhHHHH
Confidence 888666533
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-17 Score=140.63 Aligned_cols=170 Identities=28% Similarity=0.269 Sum_probs=127.8
Q ss_pred chhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeC
Q 022929 63 QPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142 (290)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~ 142 (290)
...+.++..+...|++....+...++.|++.++.+.+.++..... .++.+|||+|||+|.++..++...+..+++++|+
T Consensus 62 ~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~-~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDi 140 (275)
T PRK09328 62 AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLL-KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDI 140 (275)
T ss_pred cCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccc-cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEEC
Confidence 334556666666777766666677888999999998888755433 3678999999999999999999988899999999
Q ss_pred CHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCccc--------------ccC------------CHHH
Q 022929 143 SPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE--------------YWP------------DPQR 193 (290)
Q Consensus 143 s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~--------------~~~------------~~~~ 193 (290)
|+.+++.++++.. ..++.++.+|+.+ ++..++||+|+++--.. +.+ ....
T Consensus 141 s~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~ 219 (275)
T PRK09328 141 SPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRR 219 (275)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHH
Confidence 9999999998743 3468999999865 33356799999852111 111 1246
Q ss_pred HHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 194 GIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 194 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+++++.++|+|||.+++.... ...+++.+++++.||..+++
T Consensus 220 ~~~~~~~~Lk~gG~l~~e~g~-----------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 220 IIEQAPRYLKPGGWLLLEIGY-----------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHhcccCCEEEEEECc-----------------hHHHHHHHHHHhCCCceeEE
Confidence 888889999999999885311 12456889999999986555
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-16 Score=132.28 Aligned_cols=178 Identities=20% Similarity=0.149 Sum_probs=133.6
Q ss_pred CCCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCe
Q 022929 57 TSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKN 136 (290)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~ 136 (290)
...+..+.++.+++.+...|++....+....+.|++.++.+.+.++..........+|||+|||+|.++..+++..++.+
T Consensus 33 ~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~ 112 (251)
T TIGR03704 33 MVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIE 112 (251)
T ss_pred HHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCE
Confidence 33344467788999999889887777778888888888988888776543222346899999999999999998887889
Q ss_pred EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-CC-CCCCccEEEecCccc--------------ccC--------C--
Q 022929 137 VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-PF-PTDYADRYVSAGSIE--------------YWP--------D-- 190 (290)
Q Consensus 137 v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-~~-~~~~~D~i~~~~~l~--------------~~~--------~-- 190 (290)
++++|+|+.+++.|++|....+++++.+|+.+. +. ..++||+|+++--.. |.+ +
T Consensus 113 v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl 192 (251)
T TIGR03704 113 LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGL 192 (251)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHH
Confidence 999999999999999987655578899998652 21 124699999863211 110 1
Q ss_pred --HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 191 --PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 191 --~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
...+++.+.++|+|||.+++..... ..+++.++|++.||+..-.
T Consensus 193 ~~~~~i~~~a~~~L~~gG~l~l~~~~~-----------------~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 193 DVLRRVAAGAPDWLAPGGHLLVETSER-----------------QAPLAVEAFARAGLIARVA 238 (251)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECcc-----------------hHHHHHHHHHHCCCCceee
Confidence 2368888889999999999874321 2467888999999964433
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=135.32 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=103.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.... ++++...|+...++ +++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 4469999999999999999987 689999999999999988764322 57778888876555 567999999999998
Q ss_pred cC--CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 188 WP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 188 ~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
++ +...+++++.++|+|||++++.......... ........++.+++.++++ +|++++..+
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~---~~~p~~~~~~~~el~~~~~--~~~i~~~~e 259 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP---CPMPFSFTFKEGELKDYYQ--DWEIVKYNE 259 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC---CCCCCCcccCHHHHHHHhC--CCEEEEEec
Confidence 86 3457999999999999997765432211100 0112233468899999997 599988854
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=124.42 Aligned_cols=145 Identities=24% Similarity=0.278 Sum_probs=112.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCce-EEEcCCCCCC-CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECK-IVEGDAEDLP-FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~-~~~~d~~~l~-~~~~~~D~i~~~~~ 184 (290)
....|||+|||+|..-...--. |+..|+++|+++.|-+.+.+.+.. .+++ |+.++.+++| ++++++|.|++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3456899999999985554332 578999999999999988766432 3566 8999999998 88999999999999
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhH-hhhhH----HHhhc-----CCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFA----DVWML-----FPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~~----~~~~~-----~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++...++.+.|+++.++|+|||.+++.++....... .++++ ..|+. ..+.+ .-+.|+++-|+.++.++.
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd-~~e~Leda~f~~~~~kr~ 233 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRD-TGELLEDAEFSIDSCKRF 233 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehh-HHHHhhhcccccchhhcc
Confidence 999999999999999999999999999988765322 22222 22221 12444 446788999999988886
Q ss_pred Cc
Q 022929 255 GP 256 (290)
Q Consensus 255 ~~ 256 (290)
..
T Consensus 234 ~~ 235 (252)
T KOG4300|consen 234 NF 235 (252)
T ss_pred cC
Confidence 54
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-15 Score=121.57 Aligned_cols=124 Identities=21% Similarity=0.275 Sum_probs=96.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||+|||+|.++..++...+..+|+++|+|+.+++.++++. ...+++++++|+.+++ ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 478999999999999999988877789999999999998887653 2346899999998864 346799999875
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHH---HHHCCCcEEEEEEcC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW---FQKAGFKDVQLKRIG 255 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---l~~aGf~~v~~~~~~ 255 (290)
+.+...+++.+.++|+|||.+++..... ...++..+ +...||+.++...+.
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~~~-----------------~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKGKK-----------------YLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcCCC-----------------cHHHHHHHHHhhhhcCceEeeccccC
Confidence 3456678899999999999998864221 22334444 444899988887764
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-17 Score=141.66 Aligned_cols=210 Identities=17% Similarity=0.128 Sum_probs=144.9
Q ss_pred cccCCcCCCCCCccccccCCceeeeeecccccCCCCCC-chhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhcc
Q 022929 25 FLASDFHGKHIPKLSLIAKPRTVQSIKCSLSATSRPAS-QPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALE 103 (290)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (290)
++.....+.+...+.++............+.....+.. ..++.+|+.+..+|++....+...++.|++.++.+....+.
T Consensus 47 ~ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~ 126 (307)
T PRK11805 47 QLVLHALHLPLDIPEPFLDARLTPSEKARILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFA 126 (307)
T ss_pred HHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHH
Confidence 44444445554444444433333323333443444443 46788999999999998888888899999988888777665
Q ss_pred ccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEE
Q 022929 104 PADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 104 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
......+..+|||+|||+|.++..++...|+.+++++|+|+.+++.|+++... .+++++++|+.+ ++++++||+|
T Consensus 127 ~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlI 205 (307)
T PRK11805 127 PWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLI 205 (307)
T ss_pred HHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEE
Confidence 32111123689999999999999999998889999999999999999988532 358899999855 2344579999
Q ss_pred EecCc-------------ccccCC------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCH
Q 022929 180 VSAGS-------------IEYWPD------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (290)
Q Consensus 180 ~~~~~-------------l~~~~~------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (290)
+++-- ..+.+. ...+++++.++|+|||.+++.... +.
T Consensus 206 vsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~------------------~~ 267 (307)
T PRK11805 206 VSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN------------------SR 267 (307)
T ss_pred EECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc------------------CH
Confidence 98610 112221 247889999999999999885321 22
Q ss_pred HHHHHHHHHCCCcEEEEEE
Q 022929 235 EEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~ 253 (290)
+++.+++.+.||.-.+...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (307)
T PRK11805 268 VHLEEAYPDVPFTWLEFEN 286 (307)
T ss_pred HHHHHHHhhCCCEEEEecC
Confidence 4567777777876554443
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=121.95 Aligned_cols=147 Identities=24% Similarity=0.278 Sum_probs=114.9
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEE
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
.++...... +..+|.|+|||+|..+..+++++|+..++|+|.|++|++.|+++.. +++|..+|+.... ++...|++
T Consensus 21 dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp--~~~f~~aDl~~w~-p~~~~dll 96 (257)
T COG4106 21 DLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP--DATFEEADLRTWK-PEQPTDLL 96 (257)
T ss_pred HHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC--CCceecccHhhcC-CCCccchh
Confidence 445555554 6789999999999999999999999999999999999999988764 7899999998864 45569999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH----------------hhcCCCHHHHHHHHHH
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV----------------WMLFPKEEEYIEWFQK 243 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ll~~ 243 (290)
+++-+++++++-.+++.++...|.|||.|.+.-+..-.......+... .....+...+-++|..
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~ 176 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAP 176 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCc
Confidence 999999999999999999999999999999987654322211111111 1123467777788877
Q ss_pred CCCcEEE
Q 022929 244 AGFKDVQ 250 (290)
Q Consensus 244 aGf~~v~ 250 (290)
.+-++.-
T Consensus 177 ~~~rvDi 183 (257)
T COG4106 177 LACRVDI 183 (257)
T ss_pred ccceeee
Confidence 7665433
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.6e-17 Score=130.55 Aligned_cols=193 Identities=19% Similarity=0.178 Sum_probs=131.5
Q ss_pred HHhHHhHhhhcccCCC--cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh
Q 022929 76 FYRFLSIVYDHVINPG--HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 153 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 153 (290)
.|+.+++.++..+-.. .-...+....+...... +..++||+|||+|..+..+... ..+.+|+|+|+.|++.|.++
T Consensus 90 LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g-~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 90 LFDQYAERFDHILVDKLGYSVPELLAEMIGKADLG-PFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK 166 (287)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCC-ccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc
Confidence 4555566666544332 22334444555555543 4789999999999999999888 57899999999999999987
Q ss_pred CCCCCceEEEcCCCCC--CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcC
Q 022929 154 EPLKECKIVEGDAEDL--PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231 (290)
Q Consensus 154 ~~~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 231 (290)
..... +.+.++..+ ...+++||+|++..|+.++.+.+.++-.....|+|||.+.++....+..+- -........-
T Consensus 167 g~YD~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~l~ps~RyA 243 (287)
T COG4976 167 GLYDT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FVLGPSQRYA 243 (287)
T ss_pred cchHH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC-eecchhhhhc
Confidence 54332 223333211 134567999999999999999999999999999999999998655443321 0111111112
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEcCcccccccccccceeeeEEEEecC
Q 022929 232 PKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKP 278 (290)
Q Consensus 232 ~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~k~ 278 (290)
.+...+..+++..||++++++.+.-....+-...+.. ++|+|+
T Consensus 244 H~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L----~iark~ 286 (287)
T COG4976 244 HSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGIL----VIARKK 286 (287)
T ss_pred cchHHHHHHHHhcCceEEEeecccchhhcCCCCCCce----EEEecC
Confidence 3567889999999999999998765443333333322 456654
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=134.25 Aligned_cols=171 Identities=23% Similarity=0.217 Sum_probs=131.1
Q ss_pred CchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEe
Q 022929 62 SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILD 141 (290)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD 141 (290)
....+.++..+..+|++....+.+.++.|++.++.+.+.++...... .. +|||+|||||.+++.++...|...|+|+|
T Consensus 64 ~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~-~~-~ilDlGTGSG~iai~la~~~~~~~V~a~D 141 (280)
T COG2890 64 AEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQL-DK-RILDLGTGSGAIAIALAKEGPDAEVIAVD 141 (280)
T ss_pred HCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhc-CC-cEEEecCChHHHHHHHHhhCcCCeEEEEE
Confidence 56667888888889999999999999999999999999877433322 12 89999999999999999999889999999
Q ss_pred CCHHHHHHHhhhCCCCC---ceEEEcCCCCCCCCCCCccEEEecC--ccc-----------ccCC------------HHH
Q 022929 142 QSPHQLAKAKQKEPLKE---CKIVEGDAEDLPFPTDYADRYVSAG--SIE-----------YWPD------------PQR 193 (290)
Q Consensus 142 ~s~~~~~~a~~~~~~~~---v~~~~~d~~~l~~~~~~~D~i~~~~--~l~-----------~~~~------------~~~ 193 (290)
+|+++++.|++|....+ +.++.+|+.+ +... +||+|+++- +-. +.|. ...
T Consensus 142 is~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~~-~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~ 219 (280)
T COG2890 142 ISPDALALARENAERNGLVRVLVVQSDLFE-PLRG-KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRR 219 (280)
T ss_pred CCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccCC-ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHH
Confidence 99999999999865444 4556667655 3333 799999951 111 1110 236
Q ss_pred HHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC-CcEEEEEE
Q 022929 194 GIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG-FKDVQLKR 253 (290)
Q Consensus 194 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-f~~v~~~~ 253 (290)
++.++.+.|+|||.+++..-.. ..+.+.+++.+.| |..+...+
T Consensus 220 i~~~a~~~l~~~g~l~le~g~~-----------------q~~~v~~~~~~~~~~~~v~~~~ 263 (280)
T COG2890 220 ILGEAPDILKPGGVLILEIGLT-----------------QGEAVKALFEDTGFFEIVETLK 263 (280)
T ss_pred HHHhhHHHcCCCcEEEEEECCC-----------------cHHHHHHHHHhcCCceEEEEEe
Confidence 8889999999999998864322 4678999999999 66555544
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=123.79 Aligned_cols=169 Identities=21% Similarity=0.189 Sum_probs=123.9
Q ss_pred hhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC--CeEEEEeCCHHHHHHHhhhCCC--CCc
Q 022929 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL--KEC 159 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~--~~v 159 (290)
-++++..++|...-...++..... ...+|||||||.|.....+.+..++ ..++++|.|+.+++..+++... .++
T Consensus 47 ~~rFfkdR~wL~~Efpel~~~~~~--~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~ 124 (264)
T KOG2361|consen 47 ENRFFKDRNWLLREFPELLPVDEK--SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRV 124 (264)
T ss_pred cccccchhHHHHHhhHHhhCcccc--ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhh
Confidence 345666666655444444333221 2238999999999999999988776 8999999999999999987543 345
Q ss_pred eEEEcCCCC----CCCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH------
Q 022929 160 KIVEGDAED----LPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV------ 227 (290)
Q Consensus 160 ~~~~~d~~~----l~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~------ 227 (290)
.....|+.. -+...+++|+|++..++..++.. +..++++.++|||||.|++-+.........++....
T Consensus 125 ~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nf 204 (264)
T KOG2361|consen 125 EAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENF 204 (264)
T ss_pred cccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecce
Confidence 555666632 24667889999999999988543 579999999999999999998776554443332211
Q ss_pred -------hhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 228 -------WMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 228 -------~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
...+++.+++.+++.++||..++....
T Consensus 205 YVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~ 238 (264)
T KOG2361|consen 205 YVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVD 238 (264)
T ss_pred EEccCCceeeeccHHHHHHHHHhcccchhcccce
Confidence 114579999999999999987776543
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=126.63 Aligned_cols=144 Identities=26% Similarity=0.296 Sum_probs=111.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCCCC-CCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLPFP-TDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~~~-~~~~D~i~~~~~l 185 (290)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.... ++.+...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 5789999999999999988876 567999999999999998764322 577888888665533 3679999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchh-Hhhh-----h-------HHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSRY-----F-------ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-~~~~-----~-------~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
++..++..+++++.++|+|||.+++......... .... . ...+..+++..++.++++++||+++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 9999999999999999999999998765433211 0000 0 0112235678899999999999999887
Q ss_pred EcC
Q 022929 253 RIG 255 (290)
Q Consensus 253 ~~~ 255 (290)
...
T Consensus 203 ~~~ 205 (224)
T TIGR01983 203 GLV 205 (224)
T ss_pred eEE
Confidence 544
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-17 Score=119.64 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=63.3
Q ss_pred EEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC--CCCCCccEEEecCcccccC
Q 022929 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP--FPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 115 LDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~--~~~~~~D~i~~~~~l~~~~ 189 (290)
||||||+|.++..+++.++..+++++|+|+.+++.++++... .+......+..+.. ...++||+|++.++++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999999999998899999999999999888766332 22333333333321 1225799999999999999
Q ss_pred CHHHHHHHHHhccCCCCEE
Q 022929 190 DPQRGIREAYRVLKLGGKA 208 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l 208 (290)
+.+.+++++.++|+|||.+
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=129.23 Aligned_cols=168 Identities=28% Similarity=0.313 Sum_probs=122.1
Q ss_pred HhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHH
Q 022929 66 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 145 (290)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~ 145 (290)
+.++..+...|++....+....+.+++.++.+...+++... ..+.+|||+|||+|.++..+++..+..+++|+|+++.
T Consensus 45 pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~ 122 (251)
T TIGR03534 45 PVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPE 122 (251)
T ss_pred CHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHH
Confidence 33344444444544444445566677777878777777654 2457999999999999999999988889999999999
Q ss_pred HHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCcccc------cC--------------------CHHHHHH
Q 022929 146 QLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY------WP--------------------DPQRGIR 196 (290)
Q Consensus 146 ~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~------~~--------------------~~~~~l~ 196 (290)
+++.++++.. ..+++++.+|+.+ ++++++||+|+++-.... +. ....+++
T Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~ 201 (251)
T TIGR03534 123 ALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIA 201 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHH
Confidence 9999987643 2358899999876 455678999998532221 10 0136788
Q ss_pred HHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 197 EAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 197 ~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
++.++|+|||.+++... +...+++.++|+++||+.+++..
T Consensus 202 ~~~~~L~~gG~~~~~~~-----------------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 202 QAPRLLKPGGWLLLEIG-----------------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred HHHHhcccCCEEEEEEC-----------------ccHHHHHHHHHHhCCCCceEEEe
Confidence 99999999999988532 12357789999999998776644
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=119.16 Aligned_cols=142 Identities=15% Similarity=0.252 Sum_probs=114.3
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-C-CCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L-PFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l-~~~~~~~D~i~~~~~l~ 186 (290)
.++.+|||+|||.|.++..|.+. .+...+|+|++++.+..+.++ ++.++++|+++ + .+++++||.|+++.+++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----GVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----CCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 38899999999999999999887 488999999999998888754 56799999954 4 38899999999999999
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh------------hHHHhh-----cCCCHHHHHHHHHHCCCcEE
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY------------FADVWM-----LFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~------------~~~~~~-----~~~~~~~~~~ll~~aGf~~v 249 (290)
++.+|+.+|+++.|+ |...+++.+++..+...-. ++..|. ++.|..+++++.++.|++++
T Consensus 87 ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 87 AVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred hHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEE
Confidence 999999999988666 5677787777655432221 111221 34589999999999999999
Q ss_pred EEEEcCccc
Q 022929 250 QLKRIGPKW 258 (290)
Q Consensus 250 ~~~~~~~~~ 258 (290)
+...+...+
T Consensus 164 ~~~~~~~~~ 172 (193)
T PF07021_consen 164 ERVFLDGGR 172 (193)
T ss_pred EEEEEcCCC
Confidence 988876654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-15 Score=121.31 Aligned_cols=138 Identities=13% Similarity=0.211 Sum_probs=103.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-C-CCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L-PFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l-~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++.. +..++|+|+|+++++.+++ .+++++.+|+.+ + ++++++||+|++..+++|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~ 87 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQA 87 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHc
Confidence 67899999999999999887763 5688999999999999875 257888888865 4 366778999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-----------------hhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
++++..+++++.+.++ .+++..+....+.... ..+.....+++.+++.++++++||++++
T Consensus 88 ~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 88 TRNPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred CcCHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 9999999999888765 4444433322111000 0011112367899999999999999999
Q ss_pred EEEcC
Q 022929 251 LKRIG 255 (290)
Q Consensus 251 ~~~~~ 255 (290)
...+.
T Consensus 165 ~~~~~ 169 (194)
T TIGR02081 165 RAAFD 169 (194)
T ss_pred EEEec
Confidence 87763
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=123.52 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=86.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|..+..+++..++.+++|+|+|+++++.|+++.. ++.+..+|+.+ ++++++||+|++..+++|++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--NINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--CCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 6789999999999999999988778899999999999999998753 57788999887 78888999999999999996
Q ss_pred C--HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 190 D--PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 190 ~--~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
. ..++++++.+++ ++.+++.+...+
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 3 357888888887 467777665443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=129.88 Aligned_cols=137 Identities=13% Similarity=0.142 Sum_probs=99.1
Q ss_pred HHhHHhHhhhcccCCCcccHHHHHhhccccC---CCCCCCEEEEEcCccch----hHHHHHhhCC-----CCeEEEEeCC
Q 022929 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPAD---LSNRNMLVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQS 143 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~vLDiG~G~G~----~~~~l~~~~~-----~~~v~~vD~s 143 (290)
+.+....-...++......+.+...++..+. ...++.+|+|+|||+|. ++..+++..+ +.+|+|+|+|
T Consensus 62 l~~~lti~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis 141 (264)
T smart00138 62 LLDLMTTNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID 141 (264)
T ss_pred HHHHhhcCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC
Confidence 3443333334455544444455555443221 11245799999999996 4555666543 4789999999
Q ss_pred HHHHHHHhhhCC------------------------------CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCH--
Q 022929 144 PHQLAKAKQKEP------------------------------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP-- 191 (290)
Q Consensus 144 ~~~~~~a~~~~~------------------------------~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~-- 191 (290)
+.+++.|++..- ..+++|.+.|+.+.+.+.++||+|+|.++++|++++
T Consensus 142 ~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~ 221 (264)
T smart00138 142 LKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQ 221 (264)
T ss_pred HHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHH
Confidence 999999997531 136899999998877767789999999999999755
Q ss_pred HHHHHHHHhccCCCCEEEEEc
Q 022929 192 QRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 192 ~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.++++++.+.|+|||.+++..
T Consensus 222 ~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 222 RKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HHHHHHHHHHhCCCeEEEEEC
Confidence 479999999999999999863
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=120.55 Aligned_cols=137 Identities=13% Similarity=0.058 Sum_probs=102.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---------------CCCCceEEEcCCCCCCCC-C
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECKIVEGDAEDLPFP-T 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------------~~~~v~~~~~d~~~l~~~-~ 173 (290)
++.+|||+|||.|..+..++++ +.+|+|+|+|+.+++.+.+.. ...+++++++|+.+++.. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 6689999999999999999998 899999999999999864321 123588999999887632 3
Q ss_pred CCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+.||.|+-..+++|++.. ...++.+.++|+|||.+++........... .. ....+.+++.++|.. +|++..+
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~---gp--p~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA---GP--PFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC---Cc--CCCCCHHHHHHHhcC-CceEEEE
Confidence 569999999888888644 368999999999999877765543221110 11 123588999998874 5666666
Q ss_pred EEc
Q 022929 252 KRI 254 (290)
Q Consensus 252 ~~~ 254 (290)
+..
T Consensus 186 ~~~ 188 (213)
T TIGR03840 186 ESR 188 (213)
T ss_pred eec
Confidence 553
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=120.55 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCC----CCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDL----PFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l----~~~~~~~D~i~~~~ 183 (290)
+++.+|||+|||+|.++..+++..+..+|+++|+++.+++.+.++.. ..|+.++.+|.... ++. ++||+|++..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 37899999999999999999998766799999999999887665533 35789999998642 233 4599999642
Q ss_pred cccccCC-HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 184 SIEYWPD-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 184 ~l~~~~~-~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
.. ++ ...+++++.++|||||.+++.-+.....+.... . . ..++..++++++||+.++...+++.
T Consensus 150 ~~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~-~---~---~~~~~~~~l~~aGF~~i~~~~l~p~ 214 (226)
T PRK04266 150 AQ---PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP-K---E---IFKEEIRKLEEGGFEILEVVDLEPY 214 (226)
T ss_pred CC---hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH-H---H---HHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 21 11 234689999999999999994221110000000 0 0 1144569999999999999987654
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.3e-16 Score=113.09 Aligned_cols=93 Identities=30% Similarity=0.424 Sum_probs=77.2
Q ss_pred EEEEcCccchhHHHHHhhC---CCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEec-Ccccc
Q 022929 114 VVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSA-GSIEY 187 (290)
Q Consensus 114 vLDiG~G~G~~~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~-~~l~~ 187 (290)
|||+|||+|..+..+++.+ +..+++|+|+|+++++.++++.. ..++++++.|+.+++..+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999885 34899999999999999998863 237899999999988778889999995 55888
Q ss_pred cCCH--HHHHHHHHhccCCCC
Q 022929 188 WPDP--QRGIREAYRVLKLGG 206 (290)
Q Consensus 188 ~~~~--~~~l~~~~~~L~pgG 206 (290)
+++. .++++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 8754 479999999999998
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=123.72 Aligned_cols=124 Identities=22% Similarity=0.139 Sum_probs=98.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCC-CCCC--CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDA-EDLP--FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~-~~l~--~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|..+..+++..|+.+++|+|+|+++++.++++.. ..++.++++|+ ..++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5689999999999999999998888899999999999999987642 25689999998 6655 6677899999876
Q ss_pred cccccC--------CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 184 SIEYWP--------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 184 ~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
...+.. ....+++++.++|+|||.+++...... -..++.+.+++.||.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~----------------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG----------------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH----------------HHHHHHHHHHhCccccc
Confidence 543322 135789999999999999999764332 13567788888998644
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-15 Score=117.39 Aligned_cols=118 Identities=29% Similarity=0.295 Sum_probs=94.5
Q ss_pred EEEeCCHHHHHHHhhhCC------CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 138 TILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 138 ~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
+|+|+|++|++.|+++.. ..+++++++|+.++|+++++||+|++..++++++++.+.++++.++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999976532 23689999999999999989999999999999999999999999999999999998
Q ss_pred ccCCCchhHh-------------------------hhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 212 GPVYPTFWLS-------------------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 212 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+...+..... .+.......+++.+++.++|+++||+.+....+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 7765421111 0011111246789999999999999988776654
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=123.38 Aligned_cols=144 Identities=20% Similarity=0.305 Sum_probs=102.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++.+..+|+.. .+++||+|++..++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l 137 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVL 137 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchh
Confidence 6789999999999999999887 56799999999999999887432 367888888533 35679999999999
Q ss_pred cccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH--------hhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 186 EYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV--------WMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 186 ~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+|++++ ..+++.+.+.+++++.+ ...+.............. ...+.+..++.++++++||++.+...+.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIF-TFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEE-EECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 887754 46888888876544433 322221111111111111 1123578899999999999999998876
Q ss_pred cccc
Q 022929 256 PKWY 259 (290)
Q Consensus 256 ~~~~ 259 (290)
..++
T Consensus 217 ~~~~ 220 (230)
T PRK07580 217 SGFY 220 (230)
T ss_pred chhH
Confidence 5544
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=138.98 Aligned_cols=148 Identities=20% Similarity=0.175 Sum_probs=111.8
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCC--CCCCCCCCc
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAE--DLPFPTDYA 176 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~--~l~~~~~~~ 176 (290)
.+++.+... ++.+|||||||+|.++..+++. ..+++|+|+++.+++.+++... ..+++++++|+. .+++++++|
T Consensus 28 ~il~~l~~~-~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 28 EILSLLPPY-EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred HHHhhcCcc-CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 334444332 5679999999999999999987 5699999999999998875432 357889999995 456777889
Q ss_pred cEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchh-HhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 177 DRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFW-LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 177 D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
|+|++..+++|+++. ..+++++.++|||||.+++.+....... ..+.. ....+.+...|.+++.++||......
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKN--NPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccC--CCCeecChHHHHHHHHHheeccCCCC
Confidence 999999999999874 5899999999999999999875533210 11100 11224567899999999999765443
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=116.90 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=100.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++.. .+++++|+|+++++.++++... .+++++.+|+.+.. .++||+|+++...++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 56789999999999999999874 3899999999999999987432 24778888986643 347999999877765
Q ss_pred cCC---------------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC
Q 022929 188 WPD---------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 188 ~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 246 (290)
.++ .+++++++.++|+|||.+++...... ...++.+.|++.||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------~~~~~~~~l~~~gf 158 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------GEPDTFDKLDERGF 158 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------ChHHHHHHHHhCCC
Confidence 543 24679999999999999998764432 35788899999999
Q ss_pred cEEEEEEcC
Q 022929 247 KDVQLKRIG 255 (290)
Q Consensus 247 ~~v~~~~~~ 255 (290)
+...+.+-+
T Consensus 159 ~~~~~~~~~ 167 (179)
T TIGR00537 159 RYEIVAERG 167 (179)
T ss_pred eEEEEEEee
Confidence 887776644
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-15 Score=139.82 Aligned_cols=105 Identities=27% Similarity=0.401 Sum_probs=90.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC--CCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--FPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~--~~~~~~D~i~~~~~l 185 (290)
++.+|||||||+|..+..+++..|+.+++|+|+|+.+++.|+++... .++.++++|..+++ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57899999999999999999988899999999999999999877432 35778889998776 777889999999988
Q ss_pred cccC-------------CHHHHHHHHHhccCCCCEEEEEccC
Q 022929 186 EYWP-------------DPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 186 ~~~~-------------~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
|++. +..++++++.++|||||.+++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 8652 3468999999999999999998653
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=123.41 Aligned_cols=102 Identities=16% Similarity=0.050 Sum_probs=84.9
Q ss_pred CCCEEEEEcCccchhH--HHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTT--LGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~--~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
++++|+|||||.|.++ ..++...|+.+++++|+++++++.|++.+. .++++|..+|+.+.+...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999988443 334456788999999999999999998763 256999999997754334569999999
Q ss_pred Cccccc--CCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYW--PDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+++++ +++.++++++.+.|+|||.+++-.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88887 578899999999999999999876
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=125.24 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=97.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC---CeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
+..+|||+|||+|.++..+++..+. ..++|+|+|+.+++.|+++. .++.+..+|+.++|+++++||+|++....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp~~~~sfD~I~~~~~~- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLPFADQSLDAIIRIYAP- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCCCcCCceeEEEEecCC-
Confidence 5678999999999999999887653 47999999999999998765 46889999999999988899999986542
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhh--HHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF--ADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..++++.++|||||.+++..+........+.. ....... ... ....||++++.+++..
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~-~~~-----~~~~gF~~~~~~~~~~ 221 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHA-PEA-----EQLEGFELQHSERLAY 221 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccc-cch-----hhccCCCeeeEEEEEE
Confidence 24678999999999999988766543322211 1111111 111 1236999887777643
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.8e-15 Score=119.53 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=97.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.++||+|||.|..+..|+++ |..|+++|.|+.+++.+++.+... .++....|+.+..++ +.||+|++..++++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 5689999999999999999999 899999999999998877654322 377889999887765 46999999999998
Q ss_pred cCCH--HHHHHHHHhccCCCCEEEEEccCCC-chhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE-cCc
Q 022929 188 WPDP--QRGIREAYRVLKLGGKACIIGPVYP-TFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR-IGP 256 (290)
Q Consensus 188 ~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~-~~~ 256 (290)
++.. ..+++++...++|||++++...... ..+. . ......+...++.+.+. ||++++.++ ++.
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~--~--~~~~f~~~~~EL~~~y~--dW~il~y~E~~g~ 173 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPC--P--SPFPFLLKPGELREYYA--DWEILKYNEDVGE 173 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----S--S--S--B-TTHHHHHTT--TSEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCC--C--CCCCcccCHHHHHHHhC--CCeEEEEEccccc
Confidence 8644 5799999999999999888644321 1111 0 01122346678888887 799988744 444
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.8e-14 Score=112.50 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=98.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.-.++||+|||.|.++..|+.+ ..+++++|+|+.+++.|+++... .++++.+.|+... .++++||+|++..+++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred ccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 5579999999999999999999 46899999999999999998654 6899999999774 467789999999999999
Q ss_pred CCH---HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 189 PDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 189 ~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.+. +.++..+...|+|||.+++.+... ..-..|.+-...+.+.++|.+. |..++..+.
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHARD-------ANCRRWGHAAGAETVLEMLQEH-LTEVERVEC 180 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------HHHHHTT-S--HHHHHHHHHHH-SEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------CcccccCcccchHHHHHHHHHH-hhheeEEEE
Confidence 864 368899999999999999976421 1112233445789999999985 554444443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-14 Score=107.36 Aligned_cols=111 Identities=25% Similarity=0.333 Sum_probs=86.2
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCC-CCCCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-LPFPT 173 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~-l~~~~ 173 (290)
...+++.+... ++.+|||+|||+|.++..+++..|..+++++|+|+.+++.++++.. ..+++++..|... ++...
T Consensus 8 ~~~~~~~~~~~-~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 8 RALTLSKLRLR-PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHHcCCC-CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 33344444432 5689999999999999999999878899999999999999987632 3467888888754 33334
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
++||.|++..... ...++++.+.+.|+|||.+++..
T Consensus 87 ~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 5799999976543 34589999999999999998753
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=118.01 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=85.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC---CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~---~~~~~~D~i~~~~ 183 (290)
...+|||||||+|.++..+++..|...++|+|+++.+++.|+++.. ..+++++++|+.+++ ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4579999999999999999999999999999999999999876532 347899999996543 4455799999876
Q ss_pred cccccCCH--------HHHHHHHHhccCCCCEEEEEccC
Q 022929 184 SIEYWPDP--------QRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 184 ~l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
...|.... ..+++++.++|||||.+++.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 54433221 46899999999999999987643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-14 Score=116.61 Aligned_cols=137 Identities=17% Similarity=0.140 Sum_probs=101.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---------------CCCCceEEEcCCCCCCCC-C
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECKIVEGDAEDLPFP-T 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------------~~~~v~~~~~d~~~l~~~-~ 173 (290)
++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+.+.. ...++++.++|+.+++.. .
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 5689999999999999999997 899999999999999874321 124588899999887533 2
Q ss_pred CCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
..||.|+-..++++++.. .++++.+.++|+|||.+++........... .. ....+.+++.+++.. +|++...
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~---gP--p~~~~~~el~~~~~~-~~~i~~~ 188 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA---GP--PFSVSDEEVEALYAG-CFEIELL 188 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC---CC--CCCCCHHHHHHHhcC-CceEEEe
Confidence 469999999999988643 479999999999999766644332211111 01 124588999999863 3777766
Q ss_pred EEc
Q 022929 252 KRI 254 (290)
Q Consensus 252 ~~~ 254 (290)
+..
T Consensus 189 ~~~ 191 (218)
T PRK13255 189 ERQ 191 (218)
T ss_pred eec
Confidence 654
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=114.12 Aligned_cols=139 Identities=19% Similarity=0.347 Sum_probs=103.6
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL 169 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l 169 (290)
++++...+..+... ++.+|||+|||+|.++..++... +..+++++|+++.+++.++++.. ..+++++.+|..+.
T Consensus 26 ~~~r~~~l~~l~~~-~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 26 EEIRALALSKLRLR-KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred HHHHHHHHHHcCCC-CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 55565556666554 78999999999999999988764 35799999999999999987632 24678888888653
Q ss_pred -CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 170 -PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 170 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
+...++||+|++.. ...++..+++.+.+.|+|||.+++...... +..+..+.|++.||.
T Consensus 105 l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------------~~~~~~~~l~~~g~~- 164 (198)
T PRK00377 105 LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILLE----------------TVNNALSALENIGFN- 164 (198)
T ss_pred HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecHH----------------HHHHHHHHHHHcCCC-
Confidence 32335699999854 234667899999999999999987433111 356788899999994
Q ss_pred EEEEEc
Q 022929 249 VQLKRI 254 (290)
Q Consensus 249 v~~~~~ 254 (290)
.++..+
T Consensus 165 ~~~~~~ 170 (198)
T PRK00377 165 LEITEV 170 (198)
T ss_pred eEEEEE
Confidence 444444
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-13 Score=113.38 Aligned_cols=156 Identities=14% Similarity=0.018 Sum_probs=102.7
Q ss_pred ccHHHHHhhccc---cCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhC-CCCCceEEEcCCC
Q 022929 93 WTEDMRDDALEP---ADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAE 167 (290)
Q Consensus 93 ~~~~~~~~~l~~---~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~-~~~~v~~~~~d~~ 167 (290)
+...+...++.- +.+ .++.+|||+|||+|.++..+++... ...|+++|+++.+.+...+.. ...|+.++..|+.
T Consensus 113 ~rSKlaa~i~~g~~~l~I-kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~ 191 (293)
T PTZ00146 113 FRSKLAAAIIGGVANIPI-KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR 191 (293)
T ss_pred cccHHHHHHHCCcceecc-CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 445566555443 333 4889999999999999999999864 468999999987543333222 2358899999985
Q ss_pred CC---CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHC
Q 022929 168 DL---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA 244 (290)
Q Consensus 168 ~l---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 244 (290)
.. ....+++|+|++... ...+...++.++.++|||||.+++...... .......... ++ +++ +.|+++
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~-id~g~~pe~~----f~-~ev-~~L~~~ 262 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANC-IDSTAKPEVV----FA-SEV-QKLKKE 262 (293)
T ss_pred ChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccc-cccCCCHHHH----HH-HHH-HHHHHc
Confidence 42 222346999998764 222334566789999999999999522111 1000000000 01 334 889999
Q ss_pred CCcEEEEEEcCccc
Q 022929 245 GFKDVQLKRIGPKW 258 (290)
Q Consensus 245 Gf~~v~~~~~~~~~ 258 (290)
||+.++...+.+.+
T Consensus 263 GF~~~e~v~L~Py~ 276 (293)
T PTZ00146 263 GLKPKEQLTLEPFE 276 (293)
T ss_pred CCceEEEEecCCcc
Confidence 99999999887643
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-13 Score=106.93 Aligned_cols=138 Identities=21% Similarity=0.246 Sum_probs=109.6
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCC-
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAED- 168 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~- 168 (290)
..++++...++.+... ++++++|||||+|.+++.++...|..+++++|-++++++..++| +..+|++++.+++.+
T Consensus 18 TK~EIRal~ls~L~~~-~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 18 TKEEIRALTLSKLRPR-PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred cHHHHHHHHHHhhCCC-CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 3466777778887765 89999999999999999999888899999999999999988877 446789999999954
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC-c
Q 022929 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF-K 247 (290)
Q Consensus 169 l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf-~ 247 (290)
++-.. ++|.|+.... .+.+.+++.+...|||||++++...... +.....+.+++.|+ +
T Consensus 97 L~~~~-~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE----------------~~~~a~~~~~~~g~~e 155 (187)
T COG2242 97 LPDLP-SPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE----------------TLAKALEALEQLGGRE 155 (187)
T ss_pred hcCCC-CCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH----------------HHHHHHHHHHHcCCce
Confidence 33222 5999998876 3466899999999999999988643221 34566788999999 6
Q ss_pred EEEEE
Q 022929 248 DVQLK 252 (290)
Q Consensus 248 ~v~~~ 252 (290)
++++.
T Consensus 156 i~~v~ 160 (187)
T COG2242 156 IVQVQ 160 (187)
T ss_pred EEEEE
Confidence 65554
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=112.50 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=112.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC--CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~--~~~~~~D~i~~~~ 183 (290)
...+|||+|||+|.+++.++++.+..++++||+++++.+.|+++... .++++++.|+..+. ....+||+|+|+-
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 47899999999999999999998779999999999999999988543 46999999997653 3344699999953
Q ss_pred cccccC------------------CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 184 SIEYWP------------------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 184 ~l~~~~------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
-..-.. +.+++++.+..+|||||.+.++-+.. ...++.+++.+.+
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------------rl~ei~~~l~~~~ 186 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------------RLAEIIELLKSYN 186 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------------HHHHHHHHHHhcC
Confidence 322111 13478999999999999999975432 4578899999999
Q ss_pred CcEEEEEEcCcccccccccccceeeeEEEEecCCCC
Q 022929 246 FKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASG 281 (290)
Q Consensus 246 f~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~k~~~~ 281 (290)
|...++.-+-++-.. ....+ .+.++|-..+
T Consensus 187 ~~~k~i~~V~p~~~k----~A~~v--Lv~~~k~~~~ 216 (248)
T COG4123 187 LEPKRIQFVYPKIGK----AANRV--LVEAIKGGKS 216 (248)
T ss_pred CCceEEEEecCCCCC----cceEE--EEEEecCCCC
Confidence 998888877554331 12222 4666665443
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-14 Score=114.27 Aligned_cols=162 Identities=22% Similarity=0.286 Sum_probs=113.8
Q ss_pred HHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCC-CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh
Q 022929 74 FWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSN-RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (290)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 152 (290)
-+|++..+.-|.....-.....++....+..+.++. ...-|||||||+|.-+..+.+. +...+|+|+|+.|++.|.+
T Consensus 13 lfYnd~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 13 LFYNDTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred eeechhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH
Confidence 455566666666543333444556666666655431 3578999999999999888776 7899999999999999997
Q ss_pred hCCCCCceEEEcCC-CCCCCCCCCccEEEecCcccccCC-------HH----HHHHHHHhccCCCCEEEEEccCCCchhH
Q 022929 153 KEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSIEYWPD-------PQ----RGIREAYRVLKLGGKACIIGPVYPTFWL 220 (290)
Q Consensus 153 ~~~~~~v~~~~~d~-~~l~~~~~~~D~i~~~~~l~~~~~-------~~----~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 220 (290)
..- .-.++.+|+ +.+||..+.||.+++...+.|+=+ |. .++..++.+|++|+..++........
T Consensus 91 ~e~--egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~-- 166 (270)
T KOG1541|consen 91 REL--EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA-- 166 (270)
T ss_pred hhh--hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH--
Confidence 422 135788888 778999999999999888776622 22 57888999999999988864322111
Q ss_pred hhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 221 SRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+.+.+.+....+||.---+..
T Consensus 167 ------------q~d~i~~~a~~aGF~GGlvVd 187 (270)
T KOG1541|consen 167 ------------QIDMIMQQAMKAGFGGGLVVD 187 (270)
T ss_pred ------------HHHHHHHHHHhhccCCceeee
Confidence 234556666777876333333
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-14 Score=113.82 Aligned_cols=103 Identities=27% Similarity=0.354 Sum_probs=83.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
+..+|||+|||+|.++..+++..+..+++++|+++.+++.++++...+ +++++..|+.+ +.++++||+|+++--++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 578999999999999999999988888999999999999999874432 37889999866 34467899999987655
Q ss_pred ccCC-----HHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPD-----PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~-----~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.-.+ .++++++..++|+|||.++++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 4443 35799999999999999977644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-13 Score=110.01 Aligned_cols=125 Identities=25% Similarity=0.350 Sum_probs=96.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CC--ceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KE--CKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~--v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
++.+|||+|||+|.++..+++. +.+++++|+|+++++.++++... .+ +.++..|+.+ ++.+.+||+|+++..
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 6789999999999999999988 68999999999999999776421 12 7788888866 344557999998654
Q ss_pred ccccC---------------------CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 185 IEYWP---------------------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 185 l~~~~---------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
+.... ..+.+++++.++|+|||.+++..... ...+++.+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------~~~~~l~~~~~~ 163 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------TGEDEVLEYLEK 163 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------CCHHHHHHHHHH
Confidence 43211 13468999999999999988765321 135678899999
Q ss_pred CCCcEEEEEE
Q 022929 244 AGFKDVQLKR 253 (290)
Q Consensus 244 aGf~~v~~~~ 253 (290)
+||++..+..
T Consensus 164 ~g~~~~~~~~ 173 (188)
T PRK14968 164 LGFEAEVVAE 173 (188)
T ss_pred CCCeeeeeee
Confidence 9998776654
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-13 Score=112.25 Aligned_cols=102 Identities=21% Similarity=0.197 Sum_probs=79.7
Q ss_pred cCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCC
Q 022929 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDY 175 (290)
Q Consensus 105 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~ 175 (290)
....+++.+|||||||+|.++..+++..+ ...|+|+|+++ + . ...+++++++|+.+.+ +.+++
T Consensus 46 ~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~--~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 46 DKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----D--PIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred hccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----c--CCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 33334788999999999999999998863 46999999987 1 1 1246899999998753 55678
Q ss_pred ccEEEecCcccccCCH-----------HHHHHHHHhccCCCCEEEEEccC
Q 022929 176 ADRYVSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
||+|+|..+.++..++ ..+++.+.++|+|||.+++....
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 9999998776655432 35889999999999999996543
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=120.78 Aligned_cols=145 Identities=19% Similarity=0.128 Sum_probs=108.4
Q ss_pred ccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEE
Q 022929 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVE 163 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~ 163 (290)
.+.+......+...++..... +++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++.. ..++.+..
T Consensus 160 ~~~~~~l~~~la~~~~~l~~~-~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~ 236 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLARV-TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKR 236 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhCC-CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEe
Confidence 334445555666666555444 37889999999999999887765 7899999999999999987743 23478899
Q ss_pred cCCCCCCCCCCCccEEEecCccc------c--c-CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCH
Q 022929 164 GDAEDLPFPTDYADRYVSAGSIE------Y--W-PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (290)
Q Consensus 164 ~d~~~l~~~~~~~D~i~~~~~l~------~--~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (290)
+|+.++++.+++||+|+++--.. . . .-..++++++.++|+|||.+++..+..
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------------------- 297 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------------------- 297 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-------------------
Confidence 99999888777899999953211 0 1 113679999999999999998875432
Q ss_pred HHHHHHHHHCCCcEEEEEEc
Q 022929 235 EEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~~ 254 (290)
.++.++++++|| +++....
T Consensus 298 ~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 298 IDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CCHHHHHhhcCc-chheeee
Confidence 356678999999 7766553
|
This family is found exclusively in the Archaea. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=113.97 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=84.2
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF 171 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~ 171 (290)
+...+++.+.. .++.+|||||||+|..+..+++..+ ..+|+++|+++++++.|+++... .+++++.+|..+...
T Consensus 60 ~~~~~~~~l~~-~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 60 MVAMMCELIEP-RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHhcCC-CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 34444454443 3778999999999999999988754 46999999999999999876432 347899999976443
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
..++||+|++..++++++ +++.+.|+|||.+++.
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEE
Confidence 456799999998877654 4688999999999774
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.4e-14 Score=137.78 Aligned_cols=167 Identities=19% Similarity=0.150 Sum_probs=125.1
Q ss_pred hHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCC-CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHH
Q 022929 70 KKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLS-NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA 148 (290)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~ 148 (290)
..+..+||+....+-..+++|+++++.+.+. +...... -++.+|||+|||+|.+++.+++..+..+++|+|+|+++++
T Consensus 78 ~~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~ 156 (1082)
T PLN02672 78 YEGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVK 156 (1082)
T ss_pred CCCeEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 3566788998899999999999999999888 5443210 1356899999999999999999988789999999999999
Q ss_pred HHhhhCCC-------------------CCceEEEcCCCCCCCC-CCCccEEEecC--------------cccccC-----
Q 022929 149 KAKQKEPL-------------------KECKIVEGDAEDLPFP-TDYADRYVSAG--------------SIEYWP----- 189 (290)
Q Consensus 149 ~a~~~~~~-------------------~~v~~~~~d~~~l~~~-~~~~D~i~~~~--------------~l~~~~----- 189 (290)
.|++|... .+++++++|+.+.... ..+||+|+++- +..|.|
T Consensus 157 ~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~ 236 (1082)
T PLN02672 157 VAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLY 236 (1082)
T ss_pred HHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccccc
Confidence 99887532 3589999999663211 23699999931 111111
Q ss_pred ---------------C----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHH-HHHHHCCCcEE
Q 022929 190 ---------------D----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI-EWFQKAGFKDV 249 (290)
Q Consensus 190 ---------------~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~aGf~~v 249 (290)
+ +.++++++.++|+|||.+++..-.. ..+.+. +++++.||+.+
T Consensus 237 ~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~-----------------q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 237 SLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGR-----------------PGQAVCERLFERRGFRIT 299 (1082)
T ss_pred ccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------------HHHHHHHHHHHHCCCCee
Confidence 1 2468888999999999998764322 245677 69999999887
Q ss_pred EEEEc
Q 022929 250 QLKRI 254 (290)
Q Consensus 250 ~~~~~ 254 (290)
++...
T Consensus 300 ~~~~~ 304 (1082)
T PLN02672 300 KLWQT 304 (1082)
T ss_pred EEeee
Confidence 76543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=110.77 Aligned_cols=147 Identities=22% Similarity=0.214 Sum_probs=100.4
Q ss_pred ccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEc
Q 022929 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEG 164 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~ 164 (290)
++.+...++.+. ..+..... .++.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.... +++++.+
T Consensus 15 ~~~p~~ds~~l~-~~l~~~~~-~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~ 91 (223)
T PRK14967 15 VYRPQEDTQLLA-DALAAEGL-GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRG 91 (223)
T ss_pred CcCCCCcHHHHH-HHHHhccc-CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC
Confidence 344444444333 33333333 26789999999999999998876 3459999999999999998875432 4678888
Q ss_pred CCCCCCCCCCCccEEEecCcccccCC---------------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhh
Q 022929 165 DAEDLPFPTDYADRYVSAGSIEYWPD---------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (290)
Q Consensus 165 d~~~l~~~~~~~D~i~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~ 223 (290)
|+.+ .+++++||+|+++--...... .+.+++++.++|||||.+++......
T Consensus 92 d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------- 163 (223)
T PRK14967 92 DWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------- 163 (223)
T ss_pred chhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc-------
Confidence 8866 345567999999642221110 24578889999999999998644331
Q ss_pred hHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+..++.+.+++.||.+.....
T Consensus 164 ---------~~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 164 ---------GVERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred ---------CHHHHHHHHHHCCCCeEEEEe
Confidence 234666777788886555544
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=116.35 Aligned_cols=123 Identities=24% Similarity=0.308 Sum_probs=96.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceE----EEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI----VEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~----~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||||.+++..++. +..+++|+|+++.+++.+++|...+++.. ...+....+ ..++||+|+++-.-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhhH
Confidence 7899999999999999999887 45779999999999999999987777662 222323322 23579999986422
Q ss_pred cccCCH-HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 186 EYWPDP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 186 ~~~~~~-~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++ ..+...+.+.|||||.++++..... ..+.+.+.++++||+++++...
T Consensus 240 ----~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 240 ----EVLVELAPDIKRLLKPGGRLILSGILED----------------QAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred ----HHHHHHHHHHHHHcCCCceEEEEeehHh----------------HHHHHHHHHHhCCCeEeEEEec
Confidence 22 3688899999999999999874322 2477889999999999988765
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=106.70 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=108.3
Q ss_pred HHHHHhhccccC---CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCC
Q 022929 95 EDMRDDALEPAD---LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAE 167 (290)
Q Consensus 95 ~~~~~~~l~~~~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~ 167 (290)
+.+..++.+... ......+|||+|||+|.++..|++.-=....+|+|.|+.+++.|+..+.. +.|+|.+.|+.
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDIT 128 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeecc
Confidence 344555554433 22233499999999999999999873235699999999999998865432 23899999998
Q ss_pred CCCCCCCCccEEEecCcccccC---C-----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHH
Q 022929 168 DLPFPTDYADRYVSAGSIEYWP---D-----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIE 239 (290)
Q Consensus 168 ~l~~~~~~~D~i~~~~~l~~~~---~-----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
+..+..++||+|+-...+..++ + +...+..+.++|+|||.++|..+++ |.+++.+
T Consensus 129 ~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~-----------------T~dELv~ 191 (227)
T KOG1271|consen 129 DPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF-----------------TKDELVE 191 (227)
T ss_pred CCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc-----------------cHHHHHH
Confidence 8677788899998766655441 1 1247888999999999999988765 7899999
Q ss_pred HHHHCCCcEEEEEEcC
Q 022929 240 WFQKAGFKDVQLKRIG 255 (290)
Q Consensus 240 ll~~aGf~~v~~~~~~ 255 (290)
.++..||+.....+.+
T Consensus 192 ~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 192 EFENFNFEYLSTVPTP 207 (227)
T ss_pred HHhcCCeEEEEeeccc
Confidence 9999999766555433
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=117.22 Aligned_cols=126 Identities=30% Similarity=0.412 Sum_probs=97.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
+..+|||||+|+|.++..+++.+|+.+++.+|+ |++++.+++ ..+++++.+|+. .+++. +|++++.+++|+++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 567999999999999999999999999999999 999999988 678999999998 46666 99999999999998
Q ss_pred CHH--HHHHHHHhccCCC--CEEEEEccCCCch---hHhh---hhHHHh------hcCCCHHHHHHHHH
Q 022929 190 DPQ--RGIREAYRVLKLG--GKACIIGPVYPTF---WLSR---YFADVW------MLFPKEEEYIEWFQ 242 (290)
Q Consensus 190 ~~~--~~l~~~~~~L~pg--G~l~i~~~~~~~~---~~~~---~~~~~~------~~~~~~~~~~~ll~ 242 (290)
+.+ .+|+++++.|+|| |+|+|.+...+.. .... ...+.. ..-+|.++|.++|+
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 765 7999999999999 9999987764321 1111 111211 12367888888874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-13 Score=115.28 Aligned_cols=122 Identities=25% Similarity=0.312 Sum_probs=89.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++...+++. +...++..+.+||+|+++...+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~--- 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILAN--- 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHH---
Confidence 7899999999999999887765 3456999999999999999886544431 0001111122699999864432
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
....+++++.++|||||.+++.+.... ..+++.+.+++.||++++....+
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~----------------~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEE----------------QADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHh----------------hHHHHHHHHHHCCCEEEEEEEeC
Confidence 234688999999999999999764321 35678899999999988776643
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=121.91 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=83.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------CCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
.+.+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++... .+++++..|..+. +..++||+|+|+-
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP 306 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP 306 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc
Confidence 34699999999999999999999999999999999999999987421 2578888887552 3445799999986
Q ss_pred ccccc---CC--HHHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYW---PD--PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~---~~--~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.+|.. .+ ..++++.+.++|+|||.++++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 66533 21 24789999999999999999853
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=109.67 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=114.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
...++||||+|.|..+..++..+ .+|++.|.|+.|....+++ +.+.+ |..+..-.+.+||+|.|.+++....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k----g~~vl--~~~~w~~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK----GFTVL--DIDDWQQTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC----CCeEE--ehhhhhccCCceEEEeehhhhhccC
Confidence 45789999999999999999985 5799999999998888754 33332 3333333445799999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEc--cCCCc--------hhHhhhhHHHhhcC-CCHHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 190 DPQRGIREAYRVLKLGGKACIIG--PVYPT--------FWLSRYFADVWMLF-PKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~--~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
+|..+|+.+++.|+|+|.+++.- |..+. ....+.++.....+ -..+.+.+.|+.+||+++...+.+.-+
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PYLc 245 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPYLC 245 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCccc
Confidence 99999999999999999998852 11110 01111111000000 023456689999999999999999888
Q ss_pred ccccccccceeeeEEEEec
Q 022929 259 YRGVRRHGLIMGCSVTGVK 277 (290)
Q Consensus 259 ~~~~~~~~~~~~~~~~a~k 277 (290)
...+...-+.+.+.|.=.|
T Consensus 246 EGD~~~~~Y~L~DavfVL~ 264 (265)
T PF05219_consen 246 EGDLYQSYYVLDDAVFVLR 264 (265)
T ss_pred cCcccCceEEeeeEEEEec
Confidence 7777777777766554433
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=109.91 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=85.4
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~ 171 (290)
.+...+++.+.. .++.+|||||||+|..+..+++..+ ..+|+++|+++++++.++++.. ..+++++.+|......
T Consensus 63 ~~~~~~~~~l~~-~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 63 HMVAIMCELLDL-KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHcCC-CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 444455555554 3789999999999999999888753 4799999999999999988743 3578999999876555
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
+.++||+|++.....++ .+.+.+.|||||.+++.
T Consensus 142 ~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEE
Confidence 56789999998766543 34677789999998874
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-13 Score=116.78 Aligned_cols=123 Identities=20% Similarity=0.247 Sum_probs=92.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC----ceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++...++ +.+...+.. +..+++||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILA 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCH
Confidence 6799999999999999888765 45699999999999999998754332 444555432 2335579999997653
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+ ....++.++.++|+|||.+++...... ..+++.+.+++. |+++++.+.+
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~~~----------------~~~~v~~~~~~~-f~~~~~~~~~ 285 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGILET----------------QAQSVCDAYEQG-FTVVEIRQRE 285 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCcHh----------------HHHHHHHHHHcc-CceeeEeccC
Confidence 3 235789999999999999999764321 346777888776 9888766543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=108.85 Aligned_cols=108 Identities=21% Similarity=0.233 Sum_probs=83.6
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~ 172 (290)
+...+++.+.. .++.+|||||||+|.++..+++..+ ..+|+++|+++++++.|+++.. ..+++++.+|..+....
T Consensus 65 ~~~~~~~~l~~-~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 65 MVAMMTELLEL-KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHhCC-CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 34455555544 3789999999999999999998853 3579999999999999988743 34689999999765434
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
..+||+|++.....++ .+.+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 4579999987665443 35678899999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.1e-12 Score=110.77 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=78.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCC-CCCCCC----CccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-LPFPTD----YADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~-l~~~~~----~~D~i 179 (290)
++.+|||+|||+|..+..+++..+ +.+|+++|+|++|++.++++... .++.++++|+.+ +++... ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 568999999999999999998865 58999999999999999876432 236678999975 333332 23345
Q ss_pred EecCcccccCC--HHHHHHHHHhccCCCCEEEEE
Q 022929 180 VSAGSIEYWPD--PQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 180 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~ 211 (290)
++...+++++. ...+++++++.|+|||.+++.
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 55567777754 346999999999999999874
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.9e-13 Score=118.23 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=83.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC--ceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
...+|||+|||+|.++..+++..|..+++++|+|+.+++.++++...++ .+++..|+... . .++||+|+|+..+|+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-~-~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-I-KGRFDMIISNPPFHD 273 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-c-CCCccEEEECCCccC
Confidence 3468999999999999999999888899999999999999998754433 45677777552 2 457999999988876
Q ss_pred cC-----CHHHHHHHHHhccCCCCEEEEEccC
Q 022929 188 WP-----DPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 188 ~~-----~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.. ..+++++++.++|+|||.++++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 42 2368999999999999999987654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-12 Score=104.75 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=85.7
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCC-CC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-LP 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~-l~ 170 (290)
.+.+..+++.+.. .++.+|||+|||+|.++..+++..++.+++++|+|+++++.++++.. ..+++++.+|+.+ ++
T Consensus 26 ~~v~~~l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 26 REVRLLLISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA 104 (196)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh
Confidence 3344445555544 37889999999999999999887777899999999999999988642 2468899988854 22
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.....+|.++... ..+...+++++.++|+|||.+++....
T Consensus 105 ~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 105 QLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred hCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 2222367766532 234578999999999999999888643
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-13 Score=109.59 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=100.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CC-ceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KE-CKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~-v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
...+.||+|+|-|..+..++... -.+|-.+|+++..++.|++.... .+ .++++..++++....++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999998876654 57899999999999999987654 22 5778888877654556899999999999
Q ss_pred ccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh-hcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 187 YWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW-MLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 187 ~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
|++|.+ ++|+++...|+|+|.+++-+....... ..++... +..++.+.+.++|++||++++..+.-
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~--~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF--DEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE--EEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC--cccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 999875 899999999999999999765543211 0111111 12357899999999999999987764
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-12 Score=104.06 Aligned_cols=134 Identities=12% Similarity=0.018 Sum_probs=101.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---------------CCCCCceEEEcCCCCCCCC--
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---------------EPLKECKIVEGDAEDLPFP-- 172 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---------------~~~~~v~~~~~d~~~l~~~-- 172 (290)
++.+||+.|||.|..+..|++. +.+|+|+|+|+.+++.+.+. ....+++++++|+.+++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 5689999999999999999998 88999999999999997552 1123689999999998632
Q ss_pred -CCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 173 -TDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 173 -~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
.++||+|+-..++++++.. .+..+.+.++|+|||.++++....+... -...+ ..+.+++.+++.. +|++.
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~----~GPPf--~v~~~e~~~lf~~-~~~i~ 193 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKS----QTPPY--SVTQAELIKNFSA-KIKFE 193 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCC----CCCCC--cCCHHHHHHhccC-CceEE
Confidence 2579999999999999754 4799999999999999988765332110 00011 1367888888864 45544
Q ss_pred EEE
Q 022929 250 QLK 252 (290)
Q Consensus 250 ~~~ 252 (290)
.+.
T Consensus 194 ~l~ 196 (226)
T PRK13256 194 LID 196 (226)
T ss_pred Eee
Confidence 444
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=112.61 Aligned_cols=109 Identities=22% Similarity=0.242 Sum_probs=87.5
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc---eEEEcCCCCCCCCCCCccE
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC---KIVEGDAEDLPFPTDYADR 178 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v---~~~~~d~~~l~~~~~~~D~ 178 (290)
++.+... .+.+|||+|||.|.+++.+++..|..+++-+|.|..+++.++++...+++ +++..|+.+ +..+ +||+
T Consensus 151 l~~l~~~-~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~ 227 (300)
T COG2813 151 LETLPPD-LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDL 227 (300)
T ss_pred HHhCCcc-CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccE
Confidence 3344433 34599999999999999999999999999999999999999998665433 567777765 4444 7999
Q ss_pred EEecCcccccCCH-----HHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDP-----QRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
|+|+--+|--.+. +++++...+.|++||.|.++..
T Consensus 228 IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 228 IISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9998887744322 3799999999999999999866
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=115.11 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=87.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC--CCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~ 184 (290)
.+..+||||||+|.++..++...|...++|+|+++.+++.+.++.. ..|+.++++|+..+ .++++++|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 5679999999999999999999999999999999999998876632 35789999998653 467888999998755
Q ss_pred ccccCCH------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 185 IEYWPDP------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 185 l~~~~~~------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
..|.... ..+++++.++|+|||.+.+.+...
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 4433222 479999999999999999976544
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-13 Score=116.44 Aligned_cols=137 Identities=26% Similarity=0.305 Sum_probs=95.2
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc--eEEEcCCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--KIVEGDAEDLPF 171 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v--~~~~~d~~~l~~ 171 (290)
+..+--..+.... .++.+|||+|||||.+++..++. +..+|+|+|+++.+++.|++|...+++ .+......+ .
T Consensus 147 TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~ 221 (295)
T PF06325_consen 147 TTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--L 221 (295)
T ss_dssp HHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--T
T ss_pred HHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--c
Confidence 3444444444443 37889999999999999999887 456899999999999999988554332 222222222 2
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
...+||+|+++-...- ...++..+.++|+|||.++++..... ..+++.+.+++ ||++++.
T Consensus 222 ~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~----------------~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 222 VEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILEE----------------QEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHT-TEEEEEE
T ss_pred ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------HHHHHHHHHHC-CCEEEEE
Confidence 3477999998754432 23577888999999999999865432 35678888877 9998877
Q ss_pred EEcC
Q 022929 252 KRIG 255 (290)
Q Consensus 252 ~~~~ 255 (290)
...+
T Consensus 282 ~~~~ 285 (295)
T PF06325_consen 282 REEG 285 (295)
T ss_dssp EEET
T ss_pred EEEC
Confidence 7643
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-12 Score=102.78 Aligned_cols=148 Identities=14% Similarity=0.081 Sum_probs=109.0
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCc-eEEEcCCCCC--CC------CCCCccEE
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKEC-KIVEGDAEDL--PF------PTDYADRY 179 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v-~~~~~d~~~l--~~------~~~~~D~i 179 (290)
.+|||||||+|..+..+++.+|.....-.|+++..+...+.. ....|+ .-+..|+... +. ..++||+|
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 369999999999999999999999999999998886555433 122232 2345566443 22 24579999
Q ss_pred EecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCch----hHhhhhHHHh------hcCCCHHHHHHHHHHCCCc
Q 022929 180 VSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTF----WLSRYFADVW------MLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 180 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~ll~~aGf~ 247 (290)
+|.+++|-.+- -+.+++.+.++|++||.|++-.+..... .....++... ...++.+++.++.+++||+
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 99999986653 3579999999999999999988765421 1222222221 2356889999999999999
Q ss_pred EEEEEEcCcccc
Q 022929 248 DVQLKRIGPKWY 259 (290)
Q Consensus 248 ~v~~~~~~~~~~ 259 (290)
.++...++.+-.
T Consensus 187 l~~~~~MPANN~ 198 (204)
T PF06080_consen 187 LEEDIDMPANNL 198 (204)
T ss_pred cCcccccCCCCe
Confidence 999999987643
|
The function of this family is unknown. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.1e-12 Score=106.12 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=97.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
...+|||+|||+|.++..++...++.+++++|+++.+++.++++. .+++++++|+.++.. +.+||+|+++-.+.+.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcc-cCCCcEEEEcCCccccC
Confidence 457999999999999999888765689999999999999999875 378899999987653 45799999977766643
Q ss_pred CH--------------------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 190 DP--------------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 190 ~~--------------------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
.. .+.+.....+|+|+|.+++.-...+. ++.-.+.+++..+++++||..
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~----------y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY----------YDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc----------ccccCCHHHHHHHHHhcCcEe
Confidence 21 34667778899999987776222221 122347899999999999964
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9e-13 Score=110.05 Aligned_cols=149 Identities=20% Similarity=0.185 Sum_probs=111.7
Q ss_pred hhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccC---CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEE
Q 022929 64 PRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPAD---LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTIL 140 (290)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v 140 (290)
..+.||+-+...|.+..-..-+.+++|+++++++++.+++.+. +. .+..|||+|||+|.++..++..+|...++++
T Consensus 100 r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~-~~~~ildlgtGSGaIslsll~~L~~~~v~Ai 178 (328)
T KOG2904|consen 100 RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHS-KHTHILDLGTGSGAISLSLLHGLPQCTVTAI 178 (328)
T ss_pred cCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhc-ccceEEEecCCccHHHHHHHhcCCCceEEEE
Confidence 4456777777777776677777899999999999998887643 22 4568999999999999999999999999999
Q ss_pred eCCHHHHHHHhhhCCC----CCceEEEcCCC-----CCCCCCCCccEEEecCccc--------------ccCC-------
Q 022929 141 DQSPHQLAKAKQKEPL----KECKIVEGDAE-----DLPFPTDYADRYVSAGSIE--------------YWPD------- 190 (290)
Q Consensus 141 D~s~~~~~~a~~~~~~----~~v~~~~~d~~-----~l~~~~~~~D~i~~~~~l~--------------~~~~------- 190 (290)
|.|+.++..|.+|... .+++.++.+++ ..+...+++|+++|+--.- |.+.
T Consensus 179 D~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~ 258 (328)
T KOG2904|consen 179 DVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGL 258 (328)
T ss_pred eccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhcccc
Confidence 9999999999988542 45666655442 2235668899999952211 1111
Q ss_pred -----HHHHHHHHHhccCCCCEEEEEcc
Q 022929 191 -----PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 191 -----~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
...++.-+.|+|+|||.+.+...
T Consensus 259 eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 259 EGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred chhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 11466677899999999988754
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.9e-13 Score=99.89 Aligned_cols=102 Identities=30% Similarity=0.391 Sum_probs=82.0
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC--CCCCCccEEEecCc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~--~~~~~~D~i~~~~~ 184 (290)
|.+|||+|||+|.++..+++.. ..+++|+|+++.+++.++.+... .+++++++|+.+.. +.+++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999995 68999999999999999987542 45899999997654 66788999999755
Q ss_pred ccccC--------CHHHHHHHHHhccCCCCEEEEEcc
Q 022929 185 IEYWP--------DPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 185 l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..... ....+++++.++|+|||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 54321 124789999999999999988753
|
... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.7e-12 Score=90.60 Aligned_cols=98 Identities=32% Similarity=0.403 Sum_probs=82.1
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCCC-CCCCccEEEecCcccc-
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPF-PTDYADRYVSAGSIEY- 187 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~~-~~~~~D~i~~~~~l~~- 187 (290)
+|+|+|||.|.++..+++ .+..+++++|+++.++..+++. ....++.++..|..+... ...++|+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999999988 4578999999999999988732 233468889999877553 4567999999999988
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEE
Q 022929 188 WPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677789999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-11 Score=98.54 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccEE
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~i 179 (290)
.++.+|||+|||+|.++..+++.. +..+++++|+|+.+ ...++++++.|+.+.+ ++.++||+|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 478999999999999999998875 45689999999864 1246788888986642 345679999
Q ss_pred EecCccc----c-cCC------HHHHHHHHHhccCCCCEEEEEc
Q 022929 180 VSAGSIE----Y-WPD------PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 180 ~~~~~l~----~-~~~------~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
++....+ + ... .+.+++.+.++|+|||.+++..
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9864321 1 111 2578999999999999999864
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=101.51 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=81.8
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~ 172 (290)
.+...++..+.. .++.+|||+|||+|..+..+++.. .+++++|+++++++.++++.. ..++++..+|..+....
T Consensus 65 ~~~~~l~~~l~~-~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 65 YMVARMTELLEL-KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc
Confidence 344444544444 378999999999999998887773 589999999999999987643 34688999998553223
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.++||+|++....+++ .+.+.+.|+|||.+++..
T Consensus 142 ~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 142 YAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEE
Confidence 4679999998766544 456789999999998854
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-11 Score=105.80 Aligned_cols=137 Identities=15% Similarity=0.081 Sum_probs=98.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----------CCCCCceEEEcCCCC-CCCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EPLKECKIVEGDAED-LPFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----------~~~~~v~~~~~d~~~-l~~~~~~~D~ 178 (290)
.+.+||+||||.|..+..+++..+..+++++|+++++++.|++. ...++++++.+|..+ +....++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 56799999999999999998875568999999999999999962 124678999999865 3334567999
Q ss_pred EEecCcccc---cCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 179 YVSAGSIEY---WPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 179 i~~~~~l~~---~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
|++...-.. ... -..+++.+.+.|+|||.+++....... . .. ....+.+.++++||.+.....
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~--~----~~------~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD--A----PL------VYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh--h----HH------HHHHHHHHHHHhCCceEEEEE
Confidence 998732110 011 146899999999999998776432210 0 00 013467889999998887777
Q ss_pred cCccc
Q 022929 254 IGPKW 258 (290)
Q Consensus 254 ~~~~~ 258 (290)
.-+.+
T Consensus 298 ~vPsy 302 (374)
T PRK01581 298 IVPSF 302 (374)
T ss_pred ecCCC
Confidence 65554
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=101.33 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=99.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---------------CCCceEEEcCCCCCCCCC-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------LKECKIVEGDAEDLPFPT- 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---------------~~~v~~~~~d~~~l~~~~- 173 (290)
++.+||..|||.|..+..|+++ +.+|+|+|+|+.+++.+.+... ..+++++++|+.+++...
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 6789999999999999999998 8899999999999999843211 135789999999876433
Q ss_pred CCccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 174 DYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
++||+|+=...++.++. ..+..+.+.++|+|||.+++.+...+..... ...+ ..+.+++.+++. .+|++...
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~---GPPf--~v~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME---GPPF--SVTEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS---SSS------HHHHHHHHT-TTEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC---CcCC--CCCHHHHHHHhc-CCcEEEEE
Confidence 47999999988888853 3579999999999999955544322211000 1111 136789999999 79998887
Q ss_pred EE
Q 022929 252 KR 253 (290)
Q Consensus 252 ~~ 253 (290)
+.
T Consensus 189 ~~ 190 (218)
T PF05724_consen 189 EE 190 (218)
T ss_dssp EE
T ss_pred ec
Confidence 76
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-11 Score=97.25 Aligned_cols=135 Identities=22% Similarity=0.258 Sum_probs=87.1
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF 171 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~ 171 (290)
.|...-.+.+++.+....+...|.|+|||.+.++..+.. ...|...|+.. .+-.+..+|+..+|+
T Consensus 54 ~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva------------~n~~Vtacdia~vPL 118 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA------------PNPRVTACDIANVPL 118 (219)
T ss_dssp TSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-------------SSTTEEES-TTS-S-
T ss_pred cCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccC------------CCCCEEEecCccCcC
Confidence 355555556666555444567999999999999866543 35899999932 133578899999999
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+++++|+++++.+|. -.+...+++++.|+|||||.|.|.+... ++.+.+.+.+.++..||+....
T Consensus 119 ~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~S--------------Rf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 119 EDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVKS--------------RFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp -TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGG--------------G-S-HHHHHHHHHCTTEEEEEE
T ss_pred CCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEecc--------------cCcCHHHHHHHHHHCCCeEEec
Confidence 999999999887775 3567889999999999999999987432 2346788999999999998876
Q ss_pred EEcCc
Q 022929 252 KRIGP 256 (290)
Q Consensus 252 ~~~~~ 256 (290)
...+.
T Consensus 184 d~~n~ 188 (219)
T PF05148_consen 184 DESNK 188 (219)
T ss_dssp E--ST
T ss_pred ccCCC
Confidence 55443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5e-11 Score=97.31 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=87.0
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~ 173 (290)
+...+++.+... ++.+|||||||+|..+.-+++. ..+|+.+|..++..+.|++++ ...|+.+.++|...-.-+.
T Consensus 60 ~vA~m~~~L~~~-~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLELK-PGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCCC-CCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 455556666554 8999999999999999999998 459999999999999999874 4457999999996643345
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.+||.|+.......+| +.+.+.|++||++++-.
T Consensus 137 aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 137 APYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEE
Confidence 7899999988877666 46778899999998854
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=95.08 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=98.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--------------------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------------------------------- 157 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 157 (290)
.+..+|||||.+|.++..+++.+....+.|+||++..++.|+++....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 578999999999999999999998889999999999999999863210
Q ss_pred ------CceEEEcCC----C-CCCCCCCCccEEEecCccccc--C--C--HHHHHHHHHhccCCCCEEEEEccCCCchhH
Q 022929 158 ------ECKIVEGDA----E-DLPFPTDYADRYVSAGSIEYW--P--D--PQRGIREAYRVLKLGGKACIIGPVYPTFWL 220 (290)
Q Consensus 158 ------~v~~~~~d~----~-~l~~~~~~~D~i~~~~~l~~~--~--~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 220 (290)
++.|...+. . -+.+....||+|+|-.+-.|+ . | ...+++++.++|.|||+|++.-..+..+..
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~k 217 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKK 217 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHH
Confidence 111111111 0 011234569999997665433 2 2 358999999999999999998666654432
Q ss_pred hhh-----hHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 221 SRY-----FADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 221 ~~~-----~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
... ..+....+..++.+..++.+.+.-...++.+
T Consensus 218 aar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~ 256 (288)
T KOG2899|consen 218 AARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDL 256 (288)
T ss_pred HHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccc
Confidence 222 1122334467899999999874333344443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-12 Score=102.75 Aligned_cols=142 Identities=17% Similarity=0.141 Sum_probs=112.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+....++||||+-|.+...+.... ..+++-+|.|-.|++.+++.... -.+.....|-+.+++.++++|+|+++..+||
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 356889999999999999998884 57899999999999999876432 1356788899999999999999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH------------HHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA------------DVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
.++....+.++...|||+|.++-.-...+.....+..- .....+....++-++|.+|||....+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 99999999999999999999977655555443332211 11123345678889999999986554
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=103.46 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=81.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-CCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-PFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~~~~~~~D~i~~~~~ 184 (290)
++.+|||||||.|.++..+++..|+.+++++|+++++++.|++++. .++++++.+|..+. ....++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 5689999999999999999999889999999999999999998854 25688999998442 222356999997531
Q ss_pred cc-ccC---CHHHHHHHHHhccCCCCEEEEEc
Q 022929 185 IE-YWP---DPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 185 l~-~~~---~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-. ..+ ....+++++.+.|+|||.+++..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 11 111 12589999999999999998854
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=96.59 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=104.0
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~ 174 (290)
.++...... ++++|+|.|+|||.++..++... |..+|+.+|+.++..+.|++|+.. +++++..+|+.+.-+.+
T Consensus 85 ~I~~~~gi~-pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~- 162 (256)
T COG2519 85 YIVARLGIS-PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE- 162 (256)
T ss_pred HHHHHcCCC-CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-
Confidence 334445553 89999999999999999999754 458999999999999999998532 34888999997755554
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.||+|+. .+++|-..++.+.++|+|||.+++-.++... .+...+.|++.||..++..++
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ----------------v~kt~~~l~~~g~~~ie~~E~ 221 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ----------------VEKTVEALRERGFVDIEAVET 221 (256)
T ss_pred ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH----------------HHHHHHHHHhcCccchhhhee
Confidence 6999985 5789999999999999999999987765432 345556777778876666544
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-11 Score=102.97 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=80.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------CCCceEEEcCCCCC-CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAEDL-PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~~v~~~~~d~~~l-~~~~~~~D~i~ 180 (290)
++.+||+||||.|..+..+++..+..+|+++|+++.+++.|++.+. .++++++.+|.... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 5689999999999999999887556799999999999999998642 35789999998542 23456799999
Q ss_pred ecCcccccCCH----HHHHHHHHhccCCCCEEEEE
Q 022929 181 SAGSIEYWPDP----QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 181 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~ 211 (290)
+...-.+.+.. ..+++.+.+.|+|||.+++.
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 86543332221 46889999999999998875
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=106.28 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCC--CCCCCccEEEecC-
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLP--FPTDYADRYVSAG- 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~--~~~~~~D~i~~~~- 183 (290)
.++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++.... +++++++|+.+++ +..++||.|++.-
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3789999999999999999999876679999999999999999875432 3678899997653 3356799999522
Q ss_pred -----ccc------ccCCH----------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 184 -----SIE------YWPDP----------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 184 -----~l~------~~~~~----------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
++. +...+ .++++.+.++|||||.++++++..... .+.+.+...++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------------Ene~~v~~~l~ 389 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-------------ENEQQIKAFLA 389 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------------hCHHHHHHHHH
Confidence 111 11111 268999999999999999887644221 13445556666
Q ss_pred HC-CCcEEE
Q 022929 243 KA-GFKDVQ 250 (290)
Q Consensus 243 ~a-Gf~~v~ 250 (290)
+. +|+++.
T Consensus 390 ~~~~~~~~~ 398 (427)
T PRK10901 390 RHPDAELLD 398 (427)
T ss_pred hCCCCEEec
Confidence 54 576544
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=101.80 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=81.9
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~ 172 (290)
+...+++.+... ++.+|||||||+|.++..+++..+. ..|+++|+++++++.|+++.. ..++.++.+|..+....
T Consensus 68 l~a~ll~~L~i~-~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 68 LMALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHhcCCC-CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 444455554443 7789999999999999999987643 579999999999999987632 34688899998665444
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.++||+|++...+... ...+.+.|+|||.+++.
T Consensus 147 ~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 4679999987655433 34567899999998874
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=100.28 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=106.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
.-...+|+|.|.|..+..+...+|. +-+++.+...+..++.... ++|+.+.+|+..- .|. -|+|++.+++|||+
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 3478999999999999999998765 6666666666555555554 5699999999764 554 58999999999999
Q ss_pred CHH--HHHHHHHhccCCCCEEEEEccCCCc-hhHhhh------hHHHh-------hcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 190 DPQ--RGIREAYRVLKLGGKACIIGPVYPT-FWLSRY------FADVW-------MLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 190 ~~~--~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~~~------~~~~~-------~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
|.+ ++|+++...|+|||.+++.+...+. ...... ..+.. ..-++..+++.++.++||.+.++..
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~ 330 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVAL 330 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEe
Confidence 876 8999999999999999999875543 111110 00111 1125789999999999999888876
Q ss_pred cCcc
Q 022929 254 IGPK 257 (290)
Q Consensus 254 ~~~~ 257 (290)
.+..
T Consensus 331 ~~~~ 334 (342)
T KOG3178|consen 331 TAYS 334 (342)
T ss_pred ccCc
Confidence 6543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.7e-11 Score=96.76 Aligned_cols=96 Identities=30% Similarity=0.385 Sum_probs=73.9
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--C--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--K--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
..++|+|||+|..++.+++. ..+|+|+|+|+.|++.|++.... . ...+...++.++--.+++.|+|++..++||
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 38999999999999999988 46899999999999999976432 1 123333344444334788999999999987
Q ss_pred cCCHHHHHHHHHhccCCCCEEEE
Q 022929 188 WPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
+. .+++.+++.++||++|.++.
T Consensus 113 Fd-le~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 113 FD-LERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hc-hHHHHHHHHHHcCCCCCEEE
Confidence 65 57789999999988774443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=92.46 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=94.8
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCCCccEE
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
+++.+... ++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++.+|+.++++++.+||.|
T Consensus 5 i~~~~~~~-~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 5 IVRAANLR-PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHHhcCCC-CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE
Confidence 33444432 6789999999999999999988 6799999999999999998864 347899999999888777679999
Q ss_pred EecCcccccCCHHHHHHHHHhc--cCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 180 VSAGSIEYWPDPQRGIREAYRV--LKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~--L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
+++--.+ +. ..++..+.+. +.++|.+++...... +.........+ ....++.+.=|++..+.++++.
T Consensus 82 i~n~Py~-~~--~~~i~~~l~~~~~~~~~~l~~q~e~a~-----rl~~~~~~~~y---~~lsv~~~~~~~~~~~~~v~~~ 150 (169)
T smart00650 82 VGNLPYN-IS--TPILFKLLEEPPAFRDAVLMVQKEVAR-----RLAAKPGSKDY---GRLSVLLQPYFDVKILFKVPPE 150 (169)
T ss_pred EECCCcc-cH--HHHHHHHHhcCCCcceEEEEEEHHHhH-----HhcCCCCCCcc---cHHHHHHHHHeeEEEEEEEChh
Confidence 9865443 22 2344444433 346777776532211 11111110011 2223444555667777777765
Q ss_pred cc
Q 022929 258 WY 259 (290)
Q Consensus 258 ~~ 259 (290)
..
T Consensus 151 ~F 152 (169)
T smart00650 151 AF 152 (169)
T ss_pred hC
Confidence 44
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=107.09 Aligned_cols=127 Identities=20% Similarity=0.147 Sum_probs=92.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----------CCCCceEEEcCCCCC-CCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----------PLKECKIVEGDAEDL-PFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----------~~~~v~~~~~d~~~l-~~~~~~~D~ 178 (290)
++++|||||||+|..+..+++..+..+++++|+++++++.++++. ..++++++.+|..+. ....++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 568999999999999999987632379999999999999999842 235788999998652 223457999
Q ss_pred EEecCcccccCCH-----HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 179 YVSAGSIEYWPDP-----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 179 i~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
|++...-...+.. +++++.+.+.|+|||.+++..... ... .+ ...++.+.+++.||.+
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~-~~~-~~----------~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP-YFA-PK----------AFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc-ccc-hH----------HHHHHHHHHHHcCCEE
Confidence 9997543332221 368899999999999998864321 110 00 1246888999999943
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-11 Score=98.00 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=81.5
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~ 170 (290)
..+...+++.+... ++.+|||||||+|..+..++...+ ...|+++|..+...+.|+++.. ..++.++.+|...-.
T Consensus 58 P~~~a~~l~~L~l~-pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDLK-PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC--TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhcC-CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 34555666666654 899999999999999999988753 3579999999999999998743 457899999986533
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
-...+||.|++......++ ..+.+.|++||++++-
T Consensus 137 ~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEE
Confidence 3446799999988776443 4577789999999884
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=95.95 Aligned_cols=134 Identities=20% Similarity=0.271 Sum_probs=100.1
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP 172 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~ 172 (290)
|...-.+.+++.+........|.|+|||.+.++. .. ...|+.+|+- ..+-.++.+|+.++|++
T Consensus 163 WP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~------------a~~~~V~~cDm~~vPl~ 225 (325)
T KOG3045|consen 163 WPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLV------------AVNERVIACDMRNVPLE 225 (325)
T ss_pred CCCChHHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeee------------cCCCceeeccccCCcCc
Confidence 3333444555555444467889999999998865 22 3578999981 12446789999999999
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
+++.|+++++.+|. -.+...+++++.|+|++||.++|.+... .|.+...+...+...||.+....
T Consensus 226 d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~S--------------Rf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 226 DESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKS--------------RFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred cCcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhh--------------hcccHHHHHHHHHHcCCeeeehh
Confidence 99999999877765 4577889999999999999999987432 24466778899999999877766
Q ss_pred EcCccc
Q 022929 253 RIGPKW 258 (290)
Q Consensus 253 ~~~~~~ 258 (290)
....++
T Consensus 291 ~~n~~F 296 (325)
T KOG3045|consen 291 VSNKYF 296 (325)
T ss_pred hhcceE
Confidence 555433
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-10 Score=95.91 Aligned_cols=133 Identities=23% Similarity=0.328 Sum_probs=99.1
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCC---
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP--- 172 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~--- 172 (290)
++..+... +|.+|||.|+|+|.++..++... |.++|+..|..++..+.|++++. ..++++.+.|+.+..+.
T Consensus 32 I~~~l~i~-pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 32 ILMRLDIR-PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHcCCC-CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 34444543 99999999999999999999764 56899999999999999998732 35789999999643332
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhcc-CCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVL-KLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+..+|.|+. .+++|-..+..+.+.| ++||.+++-.++... .....+.|++.||..+++
T Consensus 111 ~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ----------------v~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 111 ESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQ----------------VQKTVEALREHGFTDIET 169 (247)
T ss_dssp TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHH----------------HHHHHHHHHHTTEEEEEE
T ss_pred cCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHH----------------HHHHHHHHHHCCCeeeEE
Confidence 246999885 5788888999999999 899999887765432 345567788899988887
Q ss_pred EEcC
Q 022929 252 KRIG 255 (290)
Q Consensus 252 ~~~~ 255 (290)
.++-
T Consensus 170 ~Evl 173 (247)
T PF08704_consen 170 VEVL 173 (247)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-10 Score=104.35 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc----eEEEcCCCCCCC--CCCCccEEEec
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC----KIVEGDAEDLPF--PTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v----~~~~~d~~~l~~--~~~~~D~i~~~ 182 (290)
.++.+|||+|||+|..+..+++..+..+++++|+++.+++.++++....++ .+..+|....+. ..++||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 378999999999999999999987668999999999999999888653332 335566554432 45679999962
Q ss_pred ------CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 183 ------GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 183 ------~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.++...++ ..++++++.++|||||.++++++...
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 34444443 24699999999999999999877653
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-10 Score=102.73 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC----CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP----FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~----~~~~~~D~i~ 180 (290)
.++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++.. ..++++++.|...++ ...++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3789999999999999999998753 4699999999999999988743 246889999997765 3356799999
Q ss_pred ec------CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHH
Q 022929 181 SA------GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238 (290)
Q Consensus 181 ~~------~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
+. .++.+.++ ..++++++.++|||||.++.+++..... -+.+.+.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-------------Ene~~v~ 397 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-------------ENEAQIE 397 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------------hHHHHHH
Confidence 63 33443333 2368999999999999998887654221 0234566
Q ss_pred HHHHHC-CCcEE
Q 022929 239 EWFQKA-GFKDV 249 (290)
Q Consensus 239 ~ll~~a-Gf~~v 249 (290)
.++++. +|++.
T Consensus 398 ~~l~~~~~~~~~ 409 (434)
T PRK14901 398 QFLARHPDWKLE 409 (434)
T ss_pred HHHHhCCCcEec
Confidence 666665 57643
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-10 Score=110.47 Aligned_cols=128 Identities=18% Similarity=0.138 Sum_probs=94.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----CCceEEEcCCCCCC-CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLP-FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~~~d~~~l~-~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+.. .+++++++|+.+.- -..++||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5789999999999999999986 345799999999999999988542 35789999985521 1145799999842
Q ss_pred c-----------ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 184 S-----------IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 184 ~-----------l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
- .....+...++..+.++|+|||.+++...... .....+.+.++|+.+..++
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-----------------~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-----------------FKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-----------------CChhHHHHHhCCCeEEEEe
Confidence 1 11122345788899999999999988654321 1122678888999888877
Q ss_pred EcC
Q 022929 253 RIG 255 (290)
Q Consensus 253 ~~~ 255 (290)
..+
T Consensus 680 ~~~ 682 (702)
T PRK11783 680 AKT 682 (702)
T ss_pred cCC
Confidence 654
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=101.37 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=95.6
Q ss_pred HhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----CCCC
Q 022929 82 IVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLK 157 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----~~~~ 157 (290)
.+.+.++.+...+...+..++..-.+. +++.|||+|||+|.++...++.. ..+|+++|-|.-+ +.|.+. ....
T Consensus 33 ~iheeML~D~VRt~aYr~~i~~n~~lf-~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ 109 (346)
T KOG1499|consen 33 GIHEEMLKDSVRTLAYRNAILQNKHLF-KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLED 109 (346)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcchhhc-CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccc
Confidence 456667777766777777766655444 89999999999999999999983 6899999986644 666554 3334
Q ss_pred CceEEEcCCCCCCCCCCCccEEEecCccccc---CCHHHHHHHHHhccCCCCEEEE
Q 022929 158 ECKIVEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 158 ~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i 210 (290)
.++++.+.++++.+|.+++|+|++-++-.++ +..+.++-.--++|+|||.++=
T Consensus 110 ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 110 VITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred eEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 5889999998877776789999997665544 4456677777899999998753
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=102.52 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=98.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---------CC----CceEEEcCCCCCC----CC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LK----ECKIVEGDAEDLP----FP 172 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---------~~----~v~~~~~d~~~l~----~~ 172 (290)
++.+|||+|||.|..+.-+... .-..++|+|++.+.++.|+++.. .. ...|+.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7899999999999998888776 35899999999999999998761 11 2567888885421 22
Q ss_pred --CCCccEEEecCcccccCC----HHHHHHHHHhccCCCCEEEEEccCCCchh--Hh----------------------h
Q 022929 173 --TDYADRYVSAGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFW--LS----------------------R 222 (290)
Q Consensus 173 --~~~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~----------------------~ 222 (290)
..+||+|-|..++|+.=. ...+++++...|+|||+++...+...... .. .
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 348999999999998733 23699999999999999998755322110 00 0
Q ss_pred ----hhHHHh------------hcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 223 ----YFADVW------------MLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 223 ----~~~~~~------------~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.++..+ ......+.+.+++++.||+++....+.+
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~e 270 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHE 270 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHH
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHH
Confidence 000000 0113578999999999999998877754
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=94.37 Aligned_cols=105 Identities=27% Similarity=0.329 Sum_probs=78.6
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCC-C--CCCCCccEEEecCc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL-P--FPTDYADRYVSAGS 184 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l-~--~~~~~~D~i~~~~~ 184 (290)
...+||||||.|.++..+|...|+..++|+|++...+..+.++ ....|+.++++|+..+ . ++++++|.|+..+-
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3489999999999999999999999999999999988887655 2457899999999762 2 45678999987543
Q ss_pred ccccCCH--------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 185 IEYWPDP--------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 185 l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
=-|.... ..+++.+.++|+|||.+.+.+...
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 3322211 379999999999999999987543
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=94.75 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCCCCCCCccEEEec--
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSA-- 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~~~~~~~D~i~~~-- 182 (290)
+++.+|||+|||+|..+..+++..+ ...|+++|+++.+++.++++... .+++++..|...++...++||.|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3789999999999999999988764 36899999999999999887533 35788888987665445569999962
Q ss_pred ----CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 183 ----GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 183 ----~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.++..-++ ..++++.+.++|||||+|+.+++...
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12222111 12589999999999999998876543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.6e-10 Score=101.66 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC-CCCCCccEEEec-
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSA- 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~-~~~~~~D~i~~~- 182 (290)
.++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.++++... .++++...|...++ ...++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 378899999999999999999875 357999999999999999987543 35788999987765 345679999972
Q ss_pred -----CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 183 -----GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 183 -----~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.++..-++ ..+++.++.+.|||||.++.+++...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 12221121 13579999999999999999887653
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=101.10 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC--CCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP--FPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~--~~~~~~D~i~~~ 182 (290)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++... .+++++++|+.++. +. ++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 367899999999999999999875 457999999999999999887432 35889999997653 33 569999974
Q ss_pred C------cccccCC----------------HHHHHHHHHhccCCCCEEEEEccCC
Q 022929 183 G------SIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 183 ~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
- ++.+.++ ...+++.+.++|||||.++..++..
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 2 1111111 1258999999999999999876544
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.3e-10 Score=102.40 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=96.0
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC-
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL- 169 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l- 169 (290)
++.+...+++.+... ++.+|||+|||+|.++..+++. ..+++|+|+|+++++.|+++.. ..+++++.+|+.+.
T Consensus 282 ~e~l~~~vl~~l~~~-~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDPQ-PGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcCC-CCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence 355566666655433 6789999999999999999988 4799999999999999998753 24689999998542
Q ss_pred ---CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC
Q 022929 170 ---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 170 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 246 (290)
++.+++||+|++.---.- ....++.+.+ ++|++.++++.... +. ..++ ..|.+.||
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~-tl---------------aRDl-~~L~~~gY 417 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPA-TL---------------ARDA-GVLVEAGY 417 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChH-Hh---------------hccH-HHHhhCCc
Confidence 244567999997532211 2345555555 68888888875211 10 1122 34456899
Q ss_pred cEEEEEEcC
Q 022929 247 KDVQLKRIG 255 (290)
Q Consensus 247 ~~v~~~~~~ 255 (290)
++.++..+.
T Consensus 418 ~l~~i~~~D 426 (443)
T PRK13168 418 RLKRAGMLD 426 (443)
T ss_pred EEEEEEEec
Confidence 988887653
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=94.27 Aligned_cols=103 Identities=22% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCEEEEEcCccch----hHHHHHhhC----C-CCeEEEEeCCHHHHHHHhhhC----------------------C---
Q 022929 110 RNMLVVDVGGGTGF----TTLGIVKHV----D-AKNVTILDQSPHQLAKAKQKE----------------------P--- 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~----~~~~l~~~~----~-~~~v~~vD~s~~~~~~a~~~~----------------------~--- 155 (290)
+.-+|+..||++|. ++..+.+.. + ..+++|+|+|+.+++.|++-. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45799999999996 444444411 1 369999999999999998620 0
Q ss_pred ------CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEc
Q 022929 156 ------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 156 ------~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~ 212 (290)
..++.|...|+.+.+...+.||+|+|.+|+-++... .++++.+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 135889999998733345679999999999999765 479999999999999999863
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-10 Score=92.44 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=87.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhC---CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++.. ++.++..|+...++ +++||+|+++--..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--~~~~~~~D~~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--EATWINADALTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--CCEEEEcchhcccc-cCCccEEEECCCCC
Confidence 46799999999999999998763 24699999999999999998864 58899999976554 45799999963322
Q ss_pred cc--CC----------HHHHHHHHHhccCCCCEEEE-EccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 187 YW--PD----------PQRGIREAYRVLKLGGKACI-IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 187 ~~--~~----------~~~~l~~~~~~L~pgG~l~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
-. .+ ...+++.+.+++++|+. ++ .....-.+....++.. ..-.+..+...+.++.|+..
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQ--DESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceee--ccCcccHHHHHHHHhcCeee
Confidence 11 11 23588888886666664 33 1111111101111100 01124567778889999853
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-10 Score=103.11 Aligned_cols=104 Identities=19% Similarity=0.058 Sum_probs=77.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----CCceEEEcCCCCCC----CCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLP----FPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~~~d~~~l~----~~~~~~D~i~ 180 (290)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|+++... .+++++++|+.+.- ...++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 6789999999999998876654 346999999999999999988542 25789999986531 1245799999
Q ss_pred ecCccccc---------CCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 181 SAGSIEYW---------PDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 181 ~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+.--...- .+...+++.+.++|+|||.++..++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 86322111 12345667788999999999987654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=93.74 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=100.3
Q ss_pred HHhHHhHhhhcccCCCcccHHHHHhhccccCCCC--CCCEEEEEcCccch----hHHHHHhhCC-----CCeEEEEeCCH
Q 022929 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSN--RNMLVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQSP 144 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vLDiG~G~G~----~~~~l~~~~~-----~~~v~~vD~s~ 144 (290)
+.+....--..++...+..+.+...++..+.... ..-+|+-.||++|. ++..+.+..+ ..+|+|+|+|.
T Consensus 60 ~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~ 139 (268)
T COG1352 60 FLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL 139 (268)
T ss_pred HHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH
Confidence 4444444444566666666777777776443221 36799999999995 6666666654 48999999999
Q ss_pred HHHHHHhhhC-C-------------------------------CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCH-
Q 022929 145 HQLAKAKQKE-P-------------------------------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP- 191 (290)
Q Consensus 145 ~~~~~a~~~~-~-------------------------------~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~- 191 (290)
.+++.|+.-. . ...|.|...|+...+...+.||+|+|.+|+.++..+
T Consensus 140 ~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~ 219 (268)
T COG1352 140 SVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET 219 (268)
T ss_pred HHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH
Confidence 9999998521 0 124788888986655244559999999999999765
Q ss_pred -HHHHHHHHhccCCCCEEEEE
Q 022929 192 -QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 192 -~~~l~~~~~~L~pgG~l~i~ 211 (290)
.++++.++..|+|||.|++.
T Consensus 220 q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 220 QERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEc
Confidence 47999999999999999885
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=91.67 Aligned_cols=141 Identities=21% Similarity=0.311 Sum_probs=107.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC--CeEEEEeCCHHHHHHHhhhCCC---CC-ceEEEcCCCCCC---CCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL---KE-CKIVEGDAEDLP---FPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~-v~~~~~d~~~l~---~~~~~~D~i~ 180 (290)
...+||||.||.|..........|. ..+...|.|+..++..++.... .+ ++|.++|+.+.. -.+...|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 6689999999999999999988876 7899999999999988866332 33 499999997632 1233489999
Q ss_pred ecCcccccCCHH---HHHHHHHhccCCCCEEEEEccCCCc-hh-HhhhhH------HHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 181 SAGSIEYWPDPQ---RGIREAYRVLKLGGKACIIGPVYPT-FW-LSRYFA------DVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 181 ~~~~l~~~~~~~---~~l~~~~~~L~pgG~l~i~~~~~~~-~~-~~~~~~------~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
.+...+.++|.+ ..++.+.+.+.|||+++.....+.+ .. ..+... ...+..++..++.++++++||+.+
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 999999998854 5788999999999999987643322 21 222222 223456899999999999999844
Q ss_pred E
Q 022929 250 Q 250 (290)
Q Consensus 250 ~ 250 (290)
+
T Consensus 295 ~ 295 (311)
T PF12147_consen 295 D 295 (311)
T ss_pred h
Confidence 3
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=96.19 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=79.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC--CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL--PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l--~~~~~~~D~i~ 180 (290)
++++||+||||.|..+..+++..+..+++.+|+++.+++.+++.+. .++++++.+|.... ..++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 5789999999999999999887445789999999999999998642 35799999997432 12345799999
Q ss_pred ecCcccccCC----HHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+...-.+.+. ...+++.+.+.|+|||.++...
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 8543332222 2368999999999999997653
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.8e-09 Score=91.79 Aligned_cols=144 Identities=20% Similarity=0.206 Sum_probs=108.4
Q ss_pred cCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC---ceEEEc
Q 022929 88 INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE---CKIVEG 164 (290)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---v~~~~~ 164 (290)
+.|......+++.+++..... +|..|||-=||||.+++.+.-. |.+++|+|++..|++-|+.|+..-+ ..+...
T Consensus 176 ~~p~s~~P~lAR~mVNLa~v~-~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~ 252 (347)
T COG1041 176 FRPGSMDPRLARAMVNLARVK-RGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV 252 (347)
T ss_pred cCcCCcCHHHHHHHHHHhccc-cCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEe
Confidence 344555566777777766654 8999999999999999998777 8999999999999999999876433 334444
Q ss_pred -CCCCCCCCCCCccEEEecCcccc-----cCC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCH
Q 022929 165 -DAEDLPFPTDYADRYVSAGSIEY-----WPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (290)
Q Consensus 165 -d~~~l~~~~~~~D~i~~~~~l~~-----~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (290)
|+..+|+++.++|.|++.--.-- ... ..++++.+.++|++||.+++..+.
T Consensus 253 ~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-------------------- 312 (347)
T COG1041 253 LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-------------------- 312 (347)
T ss_pred cccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC--------------------
Confidence 99999998888999998321110 111 357999999999999999887651
Q ss_pred HHHHHHHHHCCCcEEEEEEcC
Q 022929 235 EEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~~~ 255 (290)
.....+++.||.++......
T Consensus 313 -~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 313 -DPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred -cchhhHhhcCceEEEEEEEe
Confidence 12245677899988776643
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=100.87 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCCCCCCCccEEEec--
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSA-- 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~~~~~~~D~i~~~-- 182 (290)
.++.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++... .+++++.+|+..++ ++.+||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 3788999999999999988887653 46999999999999999877532 35789999997765 44579999962
Q ss_pred ----CcccccC------C----------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 183 ----GSIEYWP------D----------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 183 ----~~l~~~~------~----------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.++...+ + ..+++.++.++|+|||.+++.++...
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1111111 1 12589999999999999999887653
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=94.68 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=78.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC-CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l-~~~~~~~D~i~~ 181 (290)
.+.+||+||||+|..+..+++..+..+++++|+++++++.+++... ..+++++..|.... ....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999999999887556789999999999999998642 24577777776431 222457999998
Q ss_pred cCcccccCC----HHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.......+. ...+++.+.+.|+|||.+++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654322222 3478899999999999998863
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=88.10 Aligned_cols=119 Identities=12% Similarity=0.034 Sum_probs=81.4
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL 169 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l 169 (290)
.++.+++.+++.+....++.+|||+|||+|.++..++... ..+|+++|.++++++.++++.. ..+++++++|+.+.
T Consensus 36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~ 114 (199)
T PRK10909 36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF 114 (199)
T ss_pred CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH
Confidence 3445544455444322257899999999999998765553 5799999999999999998743 23688999998542
Q ss_pred -CCCCCCccEEEecCcccccCCHHHHHHHHHh--ccCCCCEEEEEcc
Q 022929 170 -PFPTDYADRYVSAGSIEYWPDPQRGIREAYR--VLKLGGKACIIGP 213 (290)
Q Consensus 170 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~~~ 213 (290)
+....+||+|++.--.. ..-...+++.+.. +|+|++.+++...
T Consensus 115 l~~~~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 115 LAQPGTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HhhcCCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 22234699999865422 1223455565554 4789998888754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-09 Score=91.45 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=87.2
Q ss_pred hcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccch----hHHHHHhhCC----CCeEEEEeCCHHHHHHHhhhC--
Q 022929 85 DHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGF----TTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE-- 154 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~----~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~-- 154 (290)
..++......+.++..+... ...-+|+..||.+|. ++..+.+..+ ..+|+|+|+|+.+++.|++..
T Consensus 94 T~FFRd~~~f~~L~~~~~~~----~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 94 TAFFREAHHFPILAEHARRR----SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCccCCcHHHHHHHHHHHhc----CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 34444444444454443211 134799999999996 4444444322 368999999999999998641
Q ss_pred ----------------C----------------CCCceEEEcCCCCCCCC-CCCccEEEecCcccccCCH--HHHHHHHH
Q 022929 155 ----------------P----------------LKECKIVEGDAEDLPFP-TDYADRYVSAGSIEYWPDP--QRGIREAY 199 (290)
Q Consensus 155 ----------------~----------------~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~ 199 (290)
. ...|.|...|+.+.+++ .+.||+|+|.+++.|++.. .++++++.
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~ 249 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFV 249 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHH
Confidence 0 02478889999764432 4679999999999999654 57999999
Q ss_pred hccCCCCEEEEE
Q 022929 200 RVLKLGGKACII 211 (290)
Q Consensus 200 ~~L~pgG~l~i~ 211 (290)
+.|+|||+|++.
T Consensus 250 ~~L~pgG~L~lG 261 (287)
T PRK10611 250 PLLKPDGLLFAG 261 (287)
T ss_pred HHhCCCcEEEEe
Confidence 999999998775
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.1e-09 Score=84.82 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=97.2
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC---CCCCccEEEecCcccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSAGSIEY 187 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~---~~~~~D~i~~~~~l~~ 187 (290)
..++|||||=+....... .+-..|+.||+++. .-.+.+.|+.+.|+ ++++||+|.++.||.+
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC------------CCCceeeccccCCCCCCcccceeEEEEEEEEee
Confidence 369999999876554333 23467999999541 23467788877665 3568999999999999
Q ss_pred cCCHH---HHHHHHHhccCCCCE-----EEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 188 WPDPQ---RGIREAYRVLKLGGK-----ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 188 ~~~~~---~~l~~~~~~L~pgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
+|++. ++++.+.+.|+|+|. |+++-|..-. ....|.+.+.|..+|+..||..++.++...-.|
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv---------~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y 187 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV---------TNSRYMTEERLREIMESLGFTRVKYKKSKKLAY 187 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh---------hcccccCHHHHHHHHHhCCcEEEEEEecCeEEE
Confidence 99986 699999999999999 8887654321 123466889999999999999999988776555
Q ss_pred ccc
Q 022929 260 RGV 262 (290)
Q Consensus 260 ~~~ 262 (290)
.-+
T Consensus 188 ~l~ 190 (219)
T PF11968_consen 188 WLF 190 (219)
T ss_pred EEE
Confidence 333
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=89.64 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=80.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCC-C-----CCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL-P-----FPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l-~-----~~~~~~D~ 178 (290)
++.+|||||||+|..+..++...+ +.+++++|+++++++.|+++... .+++++.+|+.+. + .+.++||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 678999999999999888888754 58999999999999999987432 4688999998553 1 12457999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
|++... -+.+..+++.+.+.|+|||.+++....+
T Consensus 148 VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 148 AFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 997532 1345678999999999999988765443
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-10 Score=93.06 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=116.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
..+.++||+|+|.|.++..++..+ .+|++.++|..|+.+.++..- + ++ ...+..-.+-++|+|.|.+++.-.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~y--n--Vl--~~~ew~~t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKNY--N--VL--TEIEWLQTDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcCC--c--ee--eehhhhhcCceeehHHHHHHHHhh
Confidence 356899999999999999998884 579999999999998875421 1 11 111111123359999999999988
Q ss_pred CCHHHHHHHHHhccCC-CCEEEEEc--c-------CCC--chhHhhhhHHHhhcC-CCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 189 PDPQRGIREAYRVLKL-GGKACIIG--P-------VYP--TFWLSRYFADVWMLF-PKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~p-gG~l~i~~--~-------~~~--~~~~~~~~~~~~~~~-~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
-++-++++.++.+|+| +|.+++.- + +.. ......+.......+ .....+.++|+.+||.+....+++
T Consensus 183 ~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 183 FDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLP 262 (288)
T ss_pred cChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence 8999999999999999 88887641 1 111 111111222111111 023456789999999999889999
Q ss_pred cccccccccccceeeeEEEEecCCC
Q 022929 256 PKWYRGVRRHGLIMGCSVTGVKPAS 280 (290)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~a~k~~~ 280 (290)
.-+...+.++-+++.+.|.-.||..
T Consensus 263 YLCEGDm~ns~Y~L~Daifvlkp~~ 287 (288)
T KOG3987|consen 263 YLCEGDMHNSFYWLIDAIFVLKPKT 287 (288)
T ss_pred eecccccccceEEecceEEEecCCC
Confidence 8888888888888888877777753
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-09 Score=91.77 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=93.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC-----CceEEE-cCCCCCC----CCCCCccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVE-GDAEDLP----FPTDYADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~-~d~~~l~----~~~~~~D~i 179 (290)
++.++||||||+|.+...++...++++++|+|+++.+++.|+++...+ ++++.. .|...+. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999999999888888777899999999999999999886543 355543 3332221 235679999
Q ss_pred EecCcccccCCH-----HHHHHH----------------HHhccCCCCEEEEEccCCCchhHhh----hhHHHhhcCCCH
Q 022929 180 VSAGSIEYWPDP-----QRGIRE----------------AYRVLKLGGKACIIGPVYPTFWLSR----YFADVWMLFPKE 234 (290)
Q Consensus 180 ~~~~~l~~~~~~-----~~~l~~----------------~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~ 234 (290)
+|+--++.-... ..-.+. ..+++.+||.+.++........... ++..+....-+.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l 273 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENL 273 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCH
Confidence 997554422211 111222 2355668888776655433221000 001111122478
Q ss_pred HHHHHHHHHCCCcEEEEEEc
Q 022929 235 EEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~~ 254 (290)
..+.+.|++.|...+.+.++
T Consensus 274 ~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 274 PPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred HHHHHHHHHcCCceEEEEEE
Confidence 99999999999987777776
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.2e-09 Score=95.24 Aligned_cols=135 Identities=23% Similarity=0.298 Sum_probs=91.4
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC----
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL---- 169 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l---- 169 (290)
+...++..+.. .++.+|||+|||+|.++..+++. ..+|+|+|+++++++.|++++. ..+++++.+|+.+.
T Consensus 280 l~~~~~~~l~~-~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 280 LVDRALEALEL-QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHHhcc-CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 34444444433 25689999999999999999987 5689999999999999998753 34789999998542
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
+..+++||+|++.---. .-...+++.+.+ ++|++.++++.. . . |...-...|.+.||++.
T Consensus 357 ~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~-p-~---------------tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSCN-P-A---------------TLARDLEFLCKEGYGIT 416 (431)
T ss_pred HhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCC-H-H---------------HHHHHHHHHHHCCeeEE
Confidence 23345699999643211 112456666554 789887777532 1 1 12222345667899877
Q ss_pred EEEEc
Q 022929 250 QLKRI 254 (290)
Q Consensus 250 ~~~~~ 254 (290)
.+..+
T Consensus 417 ~~~~~ 421 (431)
T TIGR00479 417 WVQPV 421 (431)
T ss_pred EEEEe
Confidence 77654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-09 Score=87.38 Aligned_cols=133 Identities=23% Similarity=0.273 Sum_probs=96.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhC-----CCCCceEEEcCCCCC--CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE-----PLKECKIVEGDAEDL--PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~v~~~~~d~~~l--~~~~~~~D~i~~ 181 (290)
.+.+|||.+.|-|..++..+++ ++ +|+.++-++..++.|+-|- ...+++++.+|+.++ .+++.+||+|+-
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 6899999999999999999998 55 9999999999999998662 123578999998553 478889999984
Q ss_pred cCcccccC---CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 182 AGSIEYWP---DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 182 ~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
.---.... -.+++.+++.|+|||||.++--.-....- +...--...+.+.|+++||++++...
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------yrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------YRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------cccCChhHHHHHHHHhcCceeeeeeh
Confidence 21111111 12478999999999999997643222110 11111356888999999998776543
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=88.20 Aligned_cols=134 Identities=22% Similarity=0.255 Sum_probs=90.6
Q ss_pred HHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHH
Q 022929 71 KEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150 (290)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a 150 (290)
...+.||++...-.+.+-+.- .+......++...... .++.|||+|||+|.++...+.. +..+|++++- .+|.+.|
T Consensus 140 ~~YF~~YG~L~~QQNMmQDYV-RTgTY~~Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEA-S~MAqyA 215 (517)
T KOG1500|consen 140 SQYFQFYGYLSQQQNMMQDYV-RTGTYQRAILENHSDF-QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEA-SEMAQYA 215 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhccccc-CCcEEEEecCCccHHHHHHHHh-CcceEEEEeh-hHHHHHH
Confidence 345677887766555433221 2223333444443333 7899999999999999888877 4689999997 6677778
Q ss_pred hhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcccccCC---HHHHHHHHHhccCCCCEEEE
Q 022929 151 KQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD---PQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 151 ~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i 210 (290)
++... ..++.++.+-++++.++++ .|+|++.-+-.-+-+ .+.. -..+++|+|+|.++-
T Consensus 216 ~~Lv~~N~~~~rItVI~GKiEdieLPEk-~DviISEPMG~mL~NERMLEsY-l~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 216 RKLVASNNLADRITVIPGKIEDIELPEK-VDVIISEPMGYMLVNERMLESY-LHARKWLKPNGKMFP 280 (517)
T ss_pred HHHHhcCCccceEEEccCccccccCchh-ccEEEeccchhhhhhHHHHHHH-HHHHhhcCCCCcccC
Confidence 76643 3458889999999888775 999998543332222 2222 245699999999864
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-09 Score=87.61 Aligned_cols=104 Identities=22% Similarity=0.191 Sum_probs=82.6
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC---CCCCCCccEEEecCcc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL---PFPTDYADRYVSAGSI 185 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l---~~~~~~~D~i~~~~~l 185 (290)
..+||||||.|.++..+|+..|...++|+|+....+..|.+... .+|+.+++.|+..+ -+++++.|-|+.++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 68999999999999999999999999999999988888876532 23788899998543 1445589999876544
Q ss_pred cccCCH--------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 186 EYWPDP--------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 186 ~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
-|.... ..+++.+.+.|+|||.+.+.+...
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 333222 269999999999999999987544
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.6e-09 Score=86.59 Aligned_cols=131 Identities=19% Similarity=0.100 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHH-HhhhCCCCCc-eEEEcCCCC-----CCCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-AKQKEPLKEC-KIVEGDAED-----LPFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~v-~~~~~d~~~-----l~~~~~~~D~i~~ 181 (290)
.++.+|||+|||+|.++..+++. +..+|+|+|+++.++.. .+++ .++ .+-..|+.. ++..-..+|++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 37889999999999999999987 45789999999987765 3332 122 122233332 2211124676665
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-------hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+..+ ++..+...|+| |.+++.- .|.+...+ ...+...+..-.+++...+.+.||++..+...
T Consensus 150 S~~~--------~l~~i~~~l~~-~~~~~L~--KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 150 SLIS--------ILPELDLLLNP-NDLTLLF--KPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred ehHh--------HHHHHHHHhCc-CeEEEEc--ChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence 4433 58889999999 7766542 22221111 01111111123567788888899998877654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=90.00 Aligned_cols=121 Identities=12% Similarity=0.020 Sum_probs=82.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCC-CCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF-PTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~-~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++.. ..+++|+++|+.++.. ..++||+|++.---
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 4689999999999999999986 6799999999999999988743 2468999999976432 23469999986321
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
. .-...+++ +...++|++.++++.... . -..++..+ .||++.++..+
T Consensus 251 ~--G~~~~~~~-~l~~~~~~~ivyvsc~p~-t---------------~~rd~~~l---~~y~~~~~~~~ 297 (315)
T PRK03522 251 R--GIGKELCD-YLSQMAPRFILYSSCNAQ-T---------------MAKDLAHL---PGYRIERVQLF 297 (315)
T ss_pred C--CccHHHHH-HHHHcCCCeEEEEECCcc-c---------------chhHHhhc---cCcEEEEEEEe
Confidence 1 11122333 334467777777654322 1 12334333 58988877664
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-09 Score=91.16 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=67.3
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~ 175 (290)
.+...+++.+... ++.+|||||||+|.++..+++.. .+++++|+++.+++.++++....+++++++|+.++++++-.
T Consensus 29 ~i~~~i~~~l~~~-~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 29 NILDKIVDAAGPQ-PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHHhcCCC-CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcC
Confidence 3455555555443 77899999999999999999984 49999999999999999876556899999999887765422
Q ss_pred ccEEEecC
Q 022929 176 ADRYVSAG 183 (290)
Q Consensus 176 ~D~i~~~~ 183 (290)
+|.|+++-
T Consensus 106 ~~~vv~Nl 113 (272)
T PRK00274 106 PLKVVANL 113 (272)
T ss_pred cceEEEeC
Confidence 47777653
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.1e-09 Score=84.31 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=99.8
Q ss_pred cccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCe---------EEEEeCCHHHHHHHhhhCCC
Q 022929 86 HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKN---------VTILDQSPHQLAKAKQKEPL 156 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~---------v~~vD~s~~~~~~a~~~~~~ 156 (290)
....+.+..+.++..++...... ++..|||.-||+|.++++.+....... ++|+|+++.+++.|++|+..
T Consensus 5 ~~~~~a~L~~~lA~~ll~la~~~-~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 5 PFFGPAPLRPTLAAALLNLAGWR-PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp TSSSSTSS-HHHHHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHhCCC-CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 34455667777887777776654 789999999999999998877655555 89999999999999988532
Q ss_pred ----CCceEEEcCCCCCCCCCCCccEEEecCccccc-CC-------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhh
Q 022929 157 ----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYW-PD-------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF 224 (290)
Q Consensus 157 ----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~-~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 224 (290)
..+.+.+.|+.++++.++++|.|+++--.-.- .. +..+++++.++|++ ..+++...
T Consensus 84 ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~----------- 151 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS----------- 151 (179)
T ss_dssp TT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES-----------
T ss_pred cccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC-----------
Confidence 34788999999998777789999996333211 11 23678899999998 44444332
Q ss_pred HHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 225 ADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 225 ~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
..++...+...+++..+....
T Consensus 152 ---------~~~~~~~~~~~~~~~~~~~~~ 172 (179)
T PF01170_consen 152 ---------NRELEKALGLKGWRKRKLYNG 172 (179)
T ss_dssp ---------CCCHHHHHTSTTSEEEEEEET
T ss_pred ---------CHHHHHHhcchhhceEEEEEe
Confidence 134556777777776666554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-09 Score=90.55 Aligned_cols=150 Identities=18% Similarity=0.157 Sum_probs=105.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----C----CceEEEcCCCC------CCCCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECKIVEGDAED------LPFPT 173 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~----~v~~~~~d~~~------l~~~~ 173 (290)
+++..++|+|||.|..++-+-+. +-..++|+|+++..++.|+++... . .+.|+.+|... +++++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 37889999999999998888766 247899999999999999987431 1 26788998854 23455
Q ss_pred CCccEEEecCcccccC-C---HHHHHHHHHhccCCCCEEEEEccCCCchh----Hh---hhhHHHh--------------
Q 022929 174 DYADRYVSAGSIEYWP-D---PQRGIREAYRVLKLGGKACIIGPVYPTFW----LS---RYFADVW-------------- 228 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~-~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----~~---~~~~~~~-------------- 228 (290)
.+||+|-|.+++|+.- . .+.+++++.+.|+|||+++-..|...... .. .+-++++
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~ 274 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDV 274 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCC
Confidence 5699999999999652 2 34699999999999999988655432110 00 0000110
Q ss_pred -------h-----------cCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 229 -------M-----------LFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 229 -------~-----------~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
. ....-..+..++++.|++++....+.+-+.
T Consensus 275 p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~df~~ 323 (389)
T KOG1975|consen 275 PPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFADFYE 323 (389)
T ss_pred CCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHHHHH
Confidence 0 001346788999999999998887755433
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-08 Score=77.84 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=92.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCc--
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGS-- 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~-- 184 (290)
....++|||||+|..+..+++.. |+..+.++|+++.+.+..++.+..+ +++.++.|+.+ .+..++.|+++.+--
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcC
Confidence 36789999999999999998875 4578999999999998876654433 46678888855 233377998887421
Q ss_pred cccc---------------CC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 185 IEYW---------------PD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 185 l~~~---------------~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
.... .+ .++++.++..+|.|.|.+++...... .++++..+++.-|
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------~p~ei~k~l~~~g 185 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------KPKEILKILEKKG 185 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------------CHHHHHHHHhhcc
Confidence 1100 01 23677788889999999998754332 4678888999999
Q ss_pred CcEEEEEE
Q 022929 246 FKDVQLKR 253 (290)
Q Consensus 246 f~~v~~~~ 253 (290)
|.+.....
T Consensus 186 ~~~~~~~~ 193 (209)
T KOG3191|consen 186 YGVRIAMQ 193 (209)
T ss_pred cceeEEEE
Confidence 98666544
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-08 Score=77.93 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=85.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
.+.+|+|+|||+|.+++.++-. +...|+|+|+++++++.+++|... .+++|+..|+.++. ..+|.++++--+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 6789999999999999998876 358999999999999999988653 46899999998864 34888888643332
Q ss_pred c---CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 188 W---PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 188 ~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
. .| ..++..+.+.. -.++-. +. ..+.+-++...+++|+.+....+.
T Consensus 121 ~~rhaD-r~Fl~~Ale~s---~vVYsi-H~----------------a~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 121 QRRHAD-RPFLLKALEIS---DVVYSI-HK----------------AGSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred ccccCC-HHHHHHHHHhh---heEEEe-ec----------------cccHHHHHHHHHhcCCeEEEEEEE
Confidence 2 22 23444444433 122211 11 115678889999999988877543
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.4e-08 Score=81.83 Aligned_cols=141 Identities=21% Similarity=0.128 Sum_probs=99.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---------------------------------C-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------------------------P- 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------------------------------~- 155 (290)
...+||--|||-|.++..++.. +..+.|.|.|--|+-...--+ +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 5689999999999999999999 889999999988754432100 0
Q ss_pred ---------CCCceEEEcCCCCCCCCC---CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh
Q 022929 156 ---------LKECKIVEGDAEDLPFPT---DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (290)
Q Consensus 156 ---------~~~v~~~~~d~~~l~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~ 223 (290)
..+.....+|+.++..++ ++||+|+..+.+...++.-..++.|.++|||||.-+=..|..=.+....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~- 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS- 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC-
Confidence 013445666665543333 6899999998888888888999999999999995443333221111000
Q ss_pred hHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
.......-.+.+++..+.++.||++++.+.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000111235889999999999999988777
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.4e-09 Score=84.13 Aligned_cols=105 Identities=19% Similarity=0.143 Sum_probs=72.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC------CCCceEEEcCCCCCC----CCCCCccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLP----FPTDYADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~l~----~~~~~~D~i 179 (290)
++.+|||+|||+|..++.++...+..+|+..|.++ .++..+.|.. ..++.+...|..+.. ....+||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 78999999999999999999886678999999988 8888877643 245677777664311 234579999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
++..++......+.+++.+.++|+++|.+++.....
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999987777899999999999999977765544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=87.96 Aligned_cols=85 Identities=26% Similarity=0.324 Sum_probs=68.7
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~ 174 (290)
.+...+++.+... ++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++++|+.+++++
T Consensus 16 ~~~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 16 RVVDRIVEYAEDT-DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHHHhcCCC-CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--
Confidence 4455555555443 6789999999999999999998 5699999999999999998764 35799999999887765
Q ss_pred CccEEEecCcc
Q 022929 175 YADRYVSAGSI 185 (290)
Q Consensus 175 ~~D~i~~~~~l 185 (290)
.+|.|+++.-.
T Consensus 91 ~~d~Vv~NlPy 101 (258)
T PRK14896 91 EFNKVVSNLPY 101 (258)
T ss_pred hceEEEEcCCc
Confidence 38999886554
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=83.64 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=82.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC----CCceEEE-cCCCC-CC-CCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVE-GDAED-LP-FPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~-~d~~~-l~-~~~~~~D~i~~ 181 (290)
..++|||||++.|.-++.++...| +.+++.+|.+++..+.|++++.. .+++.+. +|..+ +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 678999999999999999999988 78999999999999999988542 3477777 46633 22 34678999996
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
-.. -.++..+++.+.++|+|||.+++-....+
T Consensus 139 Dad---K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 139 DAD---KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred eCC---hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 432 13456899999999999999987654443
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.2e-09 Score=87.45 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=87.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-------------------------------CC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------------------------------KE 158 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------------------~~ 158 (290)
++.++||||||+-..-..-+... -.+++..|.++..++..++.... ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 57899999999865432222221 36799999999888765543110 00
Q ss_pred c-eEEEcCCCCC-CCCC-----CCccEEEecCcccccC-C---HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH
Q 022929 159 C-KIVEGDAEDL-PFPT-----DYADRYVSAGSIEYWP-D---PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227 (290)
Q Consensus 159 v-~~~~~d~~~l-~~~~-----~~~D~i~~~~~l~~~~-~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 227 (290)
| .++..|+... |+.. .+||+|++..+++... + ....++++.++|||||.|++.............. ..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~-~F 213 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH-KF 213 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE-EE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE-ec
Confidence 2 2667888553 3332 2499999999998764 3 3479999999999999999986654332111000 00
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 228 WMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 228 ~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
.....+.+.+.+.++++||++.+.+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1123478999999999999988888
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-08 Score=92.51 Aligned_cols=106 Identities=9% Similarity=0.094 Sum_probs=82.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCC--CCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~ 184 (290)
....+||||||.|.++..+|...|...++|+|++...+..+.+. ....|+.++..|+..+ -++++++|.|+.++-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 56789999999999999999999999999999999877766544 2335777887777432 267778999998655
Q ss_pred ccccCCH--------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 185 IEYWPDP--------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 185 l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
=-|.... ..+++.+.+.|+|||.+.+.+...
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 4443221 379999999999999999987543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-07 Score=77.52 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=91.9
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHH---HHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH---QLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~---~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.+++|||+|.|.-++.++-.+|..+++.+|.+.. .++.+.......|+++++..+++ +....+||+|++..+-
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 3899999999999999999999999999999985 44445555666789999999987 4455679999998664
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
....+++-+...+++||.+++.--.... . ..++....++..|.+...+..+.
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~KG~~~~-------~-------El~~~~~~~~~~~~~~~~v~~~~ 177 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYKGPDAE-------E-------ELEEAKKAWKKLGLKVLSVPEFE 177 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEESS--H-------H-------HHHTHHHHHHCCCEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEcCCChH-------H-------HHHHHHhHHHHhCCEEeeecccc
Confidence 4667889999999999998775211100 0 23455667777888877777663
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.6e-08 Score=86.68 Aligned_cols=122 Identities=10% Similarity=-0.003 Sum_probs=84.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC-CCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~-~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..++.. +.+++|+|+++.+++.|+++... .+++++.+|+.+.. ....+||+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4679999999999999999976 67999999999999999987532 36889999986532 112359999875332
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
. .-...+++.+. .++|++.++++... .+. ..++..+ .||++.++..+.
T Consensus 311 ~--G~~~~~l~~l~-~~~p~~ivyvsc~p-~Tl---------------aRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 311 R--GIGKELCDYLS-QMAPKFILYSSCNA-QTM---------------AKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred C--CCcHHHHHHHH-hcCCCeEEEEEeCH-HHH---------------HHHHHHh---cCceEEEEEEec
Confidence 1 11234555554 47898888887421 110 1233333 699888877653
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-08 Score=88.50 Aligned_cols=130 Identities=17% Similarity=0.049 Sum_probs=93.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCC-----CceEEEcCCCCC----CCCCCCccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLK-----ECKIVEGDAEDL----PFPTDYADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~~d~~~l----~~~~~~~D~i 179 (290)
+|++|||+-|-||.++..++.. ++ +|+.||+|..+++.|++|...+ +..++++|+.+. .-...+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 5899999999999999999887 55 9999999999999999996543 367999999653 1234479999
Q ss_pred Eec---------CcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 180 VSA---------GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 180 ~~~---------~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
++. ....-..++..++..+.++|+|||.++++++...-. ... -.+.+...+..+|.....
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-~~~----------f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-SDL----------FLEIIARAAAAAGRRAQE 363 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-HHH----------HHHHHHHHHHhcCCcEEE
Confidence 982 111112334579999999999999999987654321 000 123455566666665555
Q ss_pred EE
Q 022929 251 LK 252 (290)
Q Consensus 251 ~~ 252 (290)
+.
T Consensus 364 ~~ 365 (393)
T COG1092 364 IE 365 (393)
T ss_pred ee
Confidence 43
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.8e-08 Score=85.13 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=78.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC-CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l-~~~~~~~D~i~~ 181 (290)
...+||.||+|.|..+..+++..+..+++.+|+++++++.|++... .++++++.+|.... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999999887656889999999999999998753 35788999998542 334567999998
Q ss_pred cCccccc---CC----HHHHHH-HHHhccCCCCEEEEE
Q 022929 182 AGSIEYW---PD----PQRGIR-EAYRVLKLGGKACII 211 (290)
Q Consensus 182 ~~~l~~~---~~----~~~~l~-~~~~~L~pgG~l~i~ 211 (290)
... ... +. ...+++ .+.+.|+|||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 632 211 11 135777 899999999998765
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-08 Score=83.27 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=80.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCC-CC-C----CCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LP-F----PTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~-l~-~----~~~~~D~ 178 (290)
+.++||||||++|..++.++...+ +.+++.+|.+++..+.|+++.. ..+++++.+|+.+ ++ + ..++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 578999999999999999998764 5789999999999999988743 2468899999844 22 1 1357999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
|+...- -.++...++.+.++|+|||.+++-...+
T Consensus 198 VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 198 AFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 997542 2345678999999999999988765443
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-08 Score=81.88 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=81.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-----CCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-----FPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-----~~~~~~D~ 178 (290)
+..+||||||+.|.-+..+++..| +.+++.+|++++..+.|++++. ..+++++.+|..+. + ...++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 568999999999999999998876 5899999999999999987643 24689999998542 1 11357999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
|+.... -.++...++.+.++|+|||.+++-.....
T Consensus 125 VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 125 VFIDAD---KRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEEST---GGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred EEEccc---ccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 997543 23566788999999999999988765543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-08 Score=86.14 Aligned_cols=83 Identities=29% Similarity=0.421 Sum_probs=65.8
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~ 171 (290)
.+...+++..... ++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++.+|+.+.++
T Consensus 23 ~i~~~Iv~~~~~~-~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 23 LVLDKIVEKAAIK-PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHhcCCC-CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 3455555555443 7889999999999999999987 5789999999999999998743 3579999999977655
Q ss_pred CCCCccEEEecC
Q 022929 172 PTDYADRYVSAG 183 (290)
Q Consensus 172 ~~~~~D~i~~~~ 183 (290)
+ .||.|+++.
T Consensus 100 ~--~~d~VvaNl 109 (294)
T PTZ00338 100 P--YFDVCVANV 109 (294)
T ss_pred c--ccCEEEecC
Confidence 3 489888753
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=80.62 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=65.9
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~ 174 (290)
.+...+++.+... ++.+|||||||+|.++..+++.. .+++++|+++.+++.++++.. ..+++++.+|+..++++
T Consensus 16 ~i~~~i~~~~~~~-~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 16 SVIQKIVEAANVL-EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHHHhcCCC-CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--
Confidence 4555566655543 67899999999999999999984 579999999999999988754 35789999999887765
Q ss_pred Ccc---EEEecCc
Q 022929 175 YAD---RYVSAGS 184 (290)
Q Consensus 175 ~~D---~i~~~~~ 184 (290)
.+| +|+++..
T Consensus 91 ~~d~~~~vvsNlP 103 (253)
T TIGR00755 91 DFPKQLKVVSNLP 103 (253)
T ss_pred HcCCcceEEEcCC
Confidence 366 6666543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.5e-08 Score=78.65 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=71.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCC-C-C--CCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL-P-F--PTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l-~-~--~~~~~D~i~~ 181 (290)
.+.+|||++||+|.++..++.+. ..+++++|.++.+++.++++... .+++++..|+.+. . . ....+|+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999999983 35899999999999999887432 3578899998442 1 1 1223788876
Q ss_pred cCcccccCCHHHHHHHHH--hccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAY--RVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~ 213 (290)
.--... .....+++.+. .+|+++|.+++...
T Consensus 128 DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 433321 22344555443 46888888877643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.9e-08 Score=87.09 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=77.4
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+.+|||++||+|..++.++...+..+|+++|+++.+++.+++|...+ ++++.+.|+..+-...++||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999988765568999999999999999886433 45688888855321135699999753 1
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..+..++..+.+.+++||.+++...
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 3456788887888999999999843
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=71.66 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=55.5
Q ss_pred CCCEEEEEcCccch-hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~ 183 (290)
++.+|||||||+|. ++..|++. +.+|+++|+++.+++.++++ .++++.+|+.+.++. -+.+|+|++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----GLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 56899999999996 88888876 78999999999999999865 468999999875432 24599999754
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-07 Score=70.76 Aligned_cols=118 Identities=22% Similarity=0.294 Sum_probs=93.9
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-- 170 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-- 170 (290)
...+.+.+.+..... .+.-|||+|.|+|.++..++.+ .+...++++|.|++......+... .+.++.+|+.++.
T Consensus 33 Ss~lA~~M~s~I~pe-sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--~~~ii~gda~~l~~~ 109 (194)
T COG3963 33 SSILARKMASVIDPE-SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--GVNIINGDAFDLRTT 109 (194)
T ss_pred cHHHHHHHHhccCcc-cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--CccccccchhhHHHH
Confidence 344555656655543 6789999999999999999887 345789999999999999988765 5568899987764
Q ss_pred ---CCCCCccEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccC
Q 022929 171 ---FPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 171 ---~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
..+..||.|+|.--+-.++... ++++.+...|.+||.++..+..
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 4556799999988777777543 7999999999999999887654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.7e-08 Score=84.68 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=74.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCC-C--CCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDL-P--FPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l-~--~~~~~~D~i~~ 181 (290)
++++|||+-|-+|.++...+.. +..+|+.||.|..+++.+++|+. ..+++++..|+.+. . -..++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 6899999999999999988775 24589999999999999998843 24578999998542 1 12357999998
Q ss_pred c------CcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 182 A------GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 182 ~------~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
. ....-..++.+++..+.++|+|||.|+++++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 2 111111245578999999999999998876543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.2e-08 Score=88.24 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=72.6
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEE---eCCHHHHHHHhhhCCCCCceEEEc--CCCCCCCCCCCccEEEecCccc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTIL---DQSPHQLAKAKQKEPLKECKIVEG--DAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~v~~~~~--d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
..+||||||.|.++..++++ +..+..+ |..+..++.|.++.- -.+.+ ....+|+++..||+|.|..++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRGv----pa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERGV----PAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcCc----chhhhhhccccccCCccchhhhhcccccc
Confidence 47899999999999999998 4444333 344456777766532 22222 2367899999999999988877
Q ss_pred ccC-CHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 187 YWP-DPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 187 ~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.+. +...+|-++.|+|+|||+++++.+..
T Consensus 193 ~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cchhcccceeehhhhhhccCceEEecCCcc
Confidence 664 33468889999999999999987654
|
; GO: 0008168 methyltransferase activity |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.9e-07 Score=76.89 Aligned_cols=93 Identities=16% Similarity=0.015 Sum_probs=73.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------CCCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
+.++||=||.|.|..++++++. + .+|+.||+++++++.+++.. ..++++++.. +.+ ...++||+|++.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 6799999999999999999998 3 49999999999999999843 3456666652 211 123579999987
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. ....+.+.+.+.|+|||.++...
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 43 23568899999999999998864
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=75.24 Aligned_cols=97 Identities=24% Similarity=0.250 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC--CCeEEEEeCCHHHHHHHhhhCC-------------CCCceEEEcCCCCCCCCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEP-------------LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~-------------~~~v~~~~~d~~~l~~~~ 173 (290)
+++.+.||+|+|+|.++..++.... +...+|||.-++.++.++++.. ..++.++.+|.....-+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 4899999999999999988886543 3445999999999999988743 235778899998877677
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+||.|.+.... .++.+++...|++||.+++-
T Consensus 161 a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 889999987332 34667888889999999873
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=85.86 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=69.1
Q ss_pred CCEEEEEcCccchhHHHHHhhC----CCCeEEEEeCCHHHHHHHhhh----CCCCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQK----EPLKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~----~~~~v~~vD~s~~~~~~a~~~----~~~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
+..|+|||||+|.++...++.. ...+|++||-|+.+....+++ .-.++|+++.+|++++..+. ++|+|||-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 6789999999999987776552 247999999998877655432 22357999999999988766 59999996
Q ss_pred CcccccCC--HHHHHHHHHhccCCCCEEE
Q 022929 183 GSIEYWPD--PQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 183 ~~l~~~~~--~~~~l~~~~~~L~pgG~l~ 209 (290)
..-....+ ..+.+....+.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 55433322 2357888899999998765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-06 Score=71.22 Aligned_cols=131 Identities=19% Similarity=0.164 Sum_probs=97.0
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHH---HHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH---QLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~---~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+.+++|||+|.|.-++.++-.+|+.+++-+|.... .++.+.+....+|++++++.++++......||+|++..+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 58999999999999999998888999999999874 5555666677788999999998875321119999987654
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
+...+++-+..++++||.++..-... . . -...+........|+.+..+.....+..
T Consensus 146 --~L~~l~e~~~pllk~~g~~~~~k~~~-------~-~------~e~~e~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 146 --SLNVLLELCLPLLKVGGGFLAYKGLA-------G-K------DELPEAEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred --chHHHHHHHHHhcccCCcchhhhHHh-------h-h------hhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence 34567788889999998874321000 0 0 0235667777888999999888765544
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-07 Score=79.38 Aligned_cols=104 Identities=25% Similarity=0.273 Sum_probs=83.7
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCcc
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D 177 (290)
+..+++... .+..++|+|||.|..+ ...|...++|+|++...+..+++.. .......|+..+|+.+.+||
T Consensus 36 v~qfl~~~~---~gsv~~d~gCGngky~----~~~p~~~~ig~D~c~~l~~~ak~~~---~~~~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 36 VRQFLDSQP---TGSVGLDVGCGNGKYL----GVNPLCLIIGCDLCTGLLGGAKRSG---GDNVCRADALKLPFREESFD 105 (293)
T ss_pred HHHHHhccC---CcceeeecccCCcccC----cCCCcceeeecchhhhhccccccCC---CceeehhhhhcCCCCCCccc
Confidence 334455443 5889999999999874 2336778999999999988887432 12578889999999999999
Q ss_pred EEEecCcccccCCH---HHHHHHHHhccCCCCEEEEE
Q 022929 178 RYVSAGSIEYWPDP---QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 178 ~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+++..++||+... ..+++++.+.|+|||..++-
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999999765 47999999999999997664
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.53 E-value=8e-08 Score=78.27 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=83.1
Q ss_pred cccHHHHHhhccccCCC-CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCC
Q 022929 92 HWTEDMRDDALEPADLS-NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDA 166 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~ 166 (290)
+.+..+++.+++.+... -++.++||+-||+|.++.+.+.+ +..+|+.||.++.++...++|... .+++.+..|.
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA 101 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH
Confidence 44566666666665532 37899999999999999999888 357999999999999999988431 2477888886
Q ss_pred CC-CC---CCCCCccEEEecCcccccCCHHHHHHHHH--hccCCCCEEEEEccCC
Q 022929 167 ED-LP---FPTDYADRYVSAGSIEYWPDPQRGIREAY--RVLKLGGKACIIGPVY 215 (290)
Q Consensus 167 ~~-l~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~ 215 (290)
.. +. ....+||+|++.--.........+++.+. .+|+++|.+++.....
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 32 21 13567999998533221111356777776 7999999998876443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-06 Score=76.37 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=79.9
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC-CCCCCCccEEEecC
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTDYADRYVSAG 183 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l-~~~~~~~D~i~~~~ 183 (290)
++||-||.|.|..+..+.+..+..+++.||+++..++.+++.+. .++++++..|..+. .-...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999999878999999999999999998743 25688888888543 22233699999854
Q ss_pred cccccCC----HHHHHHHHHhccCCCCEEEEE
Q 022929 184 SIEYWPD----PQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 184 ~l~~~~~----~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.=.--+. ...+++.+.+.|+++|.++..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4331111 157999999999999999887
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.8e-07 Score=76.80 Aligned_cols=131 Identities=17% Similarity=0.147 Sum_probs=89.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC-CCCCC-CccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTD-YADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l-~~~~~-~~D~i~ 180 (290)
+.++||-||.|.|..+..+.+..+..+++.||+++.+++.+++.+. .++++++..|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 6799999999999999999988656899999999999999987643 35788999998432 11223 799999
Q ss_pred ecCcccccCC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
....-...+. ...+++.+.+.|+|||.+++........ .. ....+.+.+++... .+....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~--~~----------~~~~i~~tl~~~F~-~v~~~~ 219 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH--PE----------LFKSILKTLRSVFP-QVKPYT 219 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT--HH----------HHHHHHHHHHTTSS-EEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc--hH----------HHHHHHHHHHHhCC-ceEEEE
Confidence 8433221111 2479999999999999998865222110 00 13456677777766 444433
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-06 Score=79.55 Aligned_cols=134 Identities=14% Similarity=0.061 Sum_probs=85.2
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCC-C
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL-P 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l-~ 170 (290)
+.+...+.+.+.. .+.+|||++||+|.++..+++. ..+|+++|.++.+++.+++|... .+++++.+|+.+. +
T Consensus 193 e~l~~~v~~~~~~--~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 193 EKMLEWALDATKG--SKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHhhc--CCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 3344444443332 2357999999999999988887 46899999999999999988532 3688999998552 1
Q ss_pred -CC--------------CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHH
Q 022929 171 -FP--------------TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235 (290)
Q Consensus 171 -~~--------------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (290)
+. ..+||+|+..--- ..-.+++++.+.+ |++.++++... .+. ..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC~p-~tl---------------ar 327 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISCNP-ETL---------------CE 327 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEeCH-HHH---------------HH
Confidence 10 1258999874221 1112345555544 67777776432 110 23
Q ss_pred HHHHHHHHCCCcEEEEEEcC
Q 022929 236 EYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 236 ~~~~ll~~aGf~~v~~~~~~ 255 (290)
++..+. + ||++.++..+.
T Consensus 328 Dl~~L~-~-gY~l~~v~~~D 345 (362)
T PRK05031 328 NLETLS-Q-THKVERFALFD 345 (362)
T ss_pred HHHHHc-C-CcEEEEEEEcc
Confidence 344443 3 99888877653
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.5e-07 Score=74.63 Aligned_cols=96 Identities=25% Similarity=0.279 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.++.+|+|..||-|.+++.+++..+...|+++|++|.+++..+++.. ..++..+++|..++.. ...+|.|++..-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 37899999999999999999996557899999999999999887743 3457889999987654 667999998643
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEE
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~ 209 (290)
- ....++..+..++++||.+.
T Consensus 179 ~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 E----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEE
T ss_pred H----HHHHHHHHHHHHhcCCcEEE
Confidence 2 22358888999999998874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.9e-07 Score=76.92 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=79.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-C-----CCCCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-F-----PTDYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-~-----~~~~~D 177 (290)
+.++|||||++.|.-++.++...+ +.+++.+|.+++..+.|+++.. ..+++++.+|..+. + + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 568999999999999999988764 6899999999999999987743 35799999988442 2 1 125799
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+|+...- -..+...++.+.++|+|||.+++-...
T Consensus 159 ~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 159 FIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred EEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 9997533 223457888889999999998775443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7e-08 Score=74.84 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=103.7
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC------CceEEEcCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------ECKIVEGDAE 167 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~v~~~~~d~~ 167 (290)
+.+...+++..... .+.+|||+|.| +|..++.++...|...|+..|-+++.++..++-...+ .+..+..+..
T Consensus 15 eala~~~l~~~n~~-rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~ 93 (201)
T KOG3201|consen 15 EALAWTILRDPNKI-RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW 93 (201)
T ss_pred HHHHHHHHhchhHH-hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh
Confidence 44555555554433 67899999999 5777788888888899999999999998887643211 1111111110
Q ss_pred --CCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 168 --DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 168 --~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
........||.|++..++..-.....+.+.+..+|+|.|.-++..|-... +++.+.+.....|
T Consensus 94 ~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~---------------sL~kF~de~~~~g 158 (201)
T KOG3201|consen 94 GAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ---------------SLQKFLDEVGTVG 158 (201)
T ss_pred hhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc---------------hHHHHHHHHHhce
Confidence 00122347999999999876666668999999999999998887765543 6788888999999
Q ss_pred CcEEEEEEcCc
Q 022929 246 FKDVQLKRIGP 256 (290)
Q Consensus 246 f~~v~~~~~~~ 256 (290)
|.+.-.++..+
T Consensus 159 f~v~l~enyde 169 (201)
T KOG3201|consen 159 FTVCLEENYDE 169 (201)
T ss_pred eEEEecccHhH
Confidence 98776655543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-06 Score=75.07 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCC-C---ceEEEcCCC-CCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLK-E---CKIVEGDAE-DLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~---v~~~~~d~~-~l~~~~~~~D~i~~~~ 183 (290)
.+.+|||+|||+|..+..+.+.++ -.+++++|.|+.+++.++...... + ......... ..++. ..|+|++.+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEeh
Confidence 567999999999988777777665 368999999999999988653311 1 111111111 11222 249999999
Q ss_pred cccccCCH--HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 184 SIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 184 ~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
+|..+++. ..+++++.+.+++ .|+++++..+.
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 99988873 2466666666655 88888887654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=78.26 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=71.4
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC--
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-- 170 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~-- 170 (290)
.+...+++.+.. .+.+|||++||+|.++..+++.. .+|+|+|+++++++.|+++... .+++++.+|+.++-
T Consensus 185 ~l~~~v~~~~~~--~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 185 KMLEWACEVTQG--SKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHhhc--CCCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 344444444332 23479999999999999998884 5999999999999999988543 36889999985521
Q ss_pred ------C---C-----CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 171 ------F---P-----TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 171 ------~---~-----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+ . ...||+|+..--- ..-...+++.+.+ |++.++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR--~G~~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPR--AGLDPDTCKLVQA---YERILYISC 311 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCC--CCCcHHHHHHHHc---CCcEEEEEc
Confidence 0 0 1137988863221 1112345555543 778887764
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.2e-07 Score=75.17 Aligned_cols=85 Identities=22% Similarity=0.345 Sum_probs=70.8
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~ 173 (290)
..+.+.+++..... +++.|||||+|.|.++..+++. +.+|+++|+++..++..++... ..+++++.+|+...+++.
T Consensus 16 ~~v~~kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 16 KNVIDKIVEAANIS-PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHHhcCCC-CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 34566777776665 5899999999999999999999 6789999999999999998864 678999999998887765
Q ss_pred C-CccEEEec
Q 022929 174 D-YADRYVSA 182 (290)
Q Consensus 174 ~-~~D~i~~~ 182 (290)
- .++.|+++
T Consensus 93 l~~~~~vVaN 102 (259)
T COG0030 93 LAQPYKVVAN 102 (259)
T ss_pred hcCCCEEEEc
Confidence 2 47888765
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-06 Score=77.29 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC-CCCCCccEEEe--
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP-FPTDYADRYVS-- 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~-~~~~~~D~i~~-- 181 (290)
.++.+|||++||+|.-+..++...++ ..++++|+++.-++..+++.. ..++.+...|...+. ...+.||.|+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 48899999999999999999988643 689999999998888887643 356777888876543 22346999994
Q ss_pred --c--CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 182 --A--GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 182 --~--~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
+ .++..-++ ..++|..+.++|||||.|+.+++....
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 2 22222111 136899999999999999988876543
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=73.77 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=81.5
Q ss_pred CEEEEEcCcc--chhHHHHH-hhCCCCeEEEEeCCHHHHHHHhhhCCC-CC--ceEEEcCCCCCC-----------CCCC
Q 022929 112 MLVVDVGGGT--GFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQKEPL-KE--CKIVEGDAEDLP-----------FPTD 174 (290)
Q Consensus 112 ~~vLDiG~G~--G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~--v~~~~~d~~~l~-----------~~~~ 174 (290)
...||||||- -...-.++ +..|..+|+.+|.++-.+..++..+.. .+ ..++.+|+.+.. +.-+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 6799999993 23344444 446889999999999999998876443 34 789999997632 1112
Q ss_pred CccEEEecCcccccCC---HHHHHHHHHhccCCCCEEEEEccCCCchhHh-hhhHHH------hhcCCCHHHHHHHHHHC
Q 022929 175 YADRYVSAGSIEYWPD---PQRGIREAYRVLKLGGKACIIGPVYPTFWLS-RYFADV------WMLFPKEEEYIEWFQKA 244 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~ll~~a 244 (290)
+.=.+++..++||+++ +..+++.+...|.||.+|.++.......... ...... ....+|.+++..+|.
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~-- 227 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD-- 227 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--
Confidence 2336778899999965 5689999999999999999986655432111 111111 123578999999988
Q ss_pred CCcEEE
Q 022929 245 GFKDVQ 250 (290)
Q Consensus 245 Gf~~v~ 250 (290)
||++++
T Consensus 228 g~elve 233 (267)
T PF04672_consen 228 GLELVE 233 (267)
T ss_dssp TSEE-T
T ss_pred CCccCC
Confidence 898664
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.1e-07 Score=78.15 Aligned_cols=84 Identities=18% Similarity=0.284 Sum_probs=65.8
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCC--CCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLP--FPT 173 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~--~~~ 173 (290)
...+++.+.. .++..+||++||.|.++..+++..+ ..+|+|+|.++++++.++++... .+++++++|+.++. .++
T Consensus 8 l~Evl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 8 LDEVVDALAI-KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 3445555543 3778999999999999999999975 58999999999999999987643 57899999997653 222
Q ss_pred --CCccEEEec
Q 022929 174 --DYADRYVSA 182 (290)
Q Consensus 174 --~~~D~i~~~ 182 (290)
.++|.|++.
T Consensus 87 ~~~~vDgIl~D 97 (296)
T PRK00050 87 GLGKVDGILLD 97 (296)
T ss_pred CCCccCEEEEC
Confidence 269999873
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.1e-06 Score=65.57 Aligned_cols=122 Identities=15% Similarity=0.076 Sum_probs=86.0
Q ss_pred cccHHHHHhhccccCC-CCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCC
Q 022929 92 HWTEDMRDDALEPADL-SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDA 166 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~ 166 (290)
+.+..+++.+++.+.. .-.+.++||+-+|||.++.+.+.+ +...++.+|.+..+....++|.. ..+++++..|.
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da 102 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA 102 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH
Confidence 4456666677766654 237899999999999999999998 36899999999999999998843 24577788887
Q ss_pred CCC-CCCCC--CccEEEecCccc-ccCCHHHHHHH--HHhccCCCCEEEEEccC
Q 022929 167 EDL-PFPTD--YADRYVSAGSIE-YWPDPQRGIRE--AYRVLKLGGKACIIGPV 214 (290)
Q Consensus 167 ~~l-~~~~~--~~D~i~~~~~l~-~~~~~~~~l~~--~~~~L~pgG~l~i~~~~ 214 (290)
... +.... +||+|+..--.+ .+-+....+.. -..+|+|+|.+++....
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 532 11222 499999854444 11112223333 45789999999987543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.3e-07 Score=68.02 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=61.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.+++++|+|||.|-+...... +....|+|+|+++++++.+..|+.. -++++.++|+.++.+..+.||.++.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 789999999999999854443 3467899999999999999988653 357889999988877778899999865443
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=62.93 Aligned_cols=101 Identities=31% Similarity=0.397 Sum_probs=73.2
Q ss_pred EEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCCCC--C-ceEEEcCCCC--CCCCC-CCccEEEecCccc
Q 022929 114 VVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLK--E-CKIVEGDAED--LPFPT-DYADRYVSAGSIE 186 (290)
Q Consensus 114 vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~-v~~~~~d~~~--l~~~~-~~~D~i~~~~~l~ 186 (290)
++|+|||+|... .+....+. ..++++|+++.++..++...... . +.+...|... +++.. ..||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 33343222 48999999999998865543211 1 5778888765 67766 4799994444444
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
+.. ....+.++.+.++|+|.+++......
T Consensus 131 ~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444 78899999999999999988766543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-06 Score=71.25 Aligned_cols=83 Identities=27% Similarity=0.386 Sum_probs=68.4
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~ 170 (290)
..+.+.+++..... +.+.|||||.|+|.++..+.+. +.+|+++|+++.++....++... ...+++.+|+...+
T Consensus 44 p~v~~~I~~ka~~k-~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 44 PLVIDQIVEKADLK-PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHHhccCCC-CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 34566667776664 8899999999999999999999 89999999999999999888542 45889999997765
Q ss_pred CCCCCccEEEec
Q 022929 171 FPTDYADRYVSA 182 (290)
Q Consensus 171 ~~~~~~D~i~~~ 182 (290)
++. ||.++++
T Consensus 121 ~P~--fd~cVsN 130 (315)
T KOG0820|consen 121 LPR--FDGCVSN 130 (315)
T ss_pred Ccc--cceeecc
Confidence 543 9999874
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.2e-06 Score=74.99 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=94.6
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP 170 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~ 170 (290)
.+.+...+++.+... ++.++||+=||.|.+++.+++. ..+|+|+|+++++++.|++++.. .|++|..++.+++.
T Consensus 278 ~ekl~~~a~~~~~~~-~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 278 AEKLYETALEWLELA-GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence 344555556655543 6789999999999999999977 68999999999999999988543 45889999997764
Q ss_pred CC---CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 171 FP---TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 171 ~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
.. ...+|.|+..---.-. .+.+++.+ ..++|...++++.... |...=...|.+.|++
T Consensus 355 ~~~~~~~~~d~VvvDPPR~G~--~~~~lk~l-~~~~p~~IvYVSCNP~-----------------TlaRDl~~L~~~gy~ 414 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPRAGA--DREVLKQL-AKLKPKRIVYVSCNPA-----------------TLARDLAILASTGYE 414 (432)
T ss_pred hhccccCCCCEEEECCCCCCC--CHHHHHHH-HhcCCCcEEEEeCCHH-----------------HHHHHHHHHHhCCeE
Confidence 22 2468999853111100 12344444 4456778888875321 233334677778987
Q ss_pred EEEEEEcC
Q 022929 248 DVQLKRIG 255 (290)
Q Consensus 248 ~v~~~~~~ 255 (290)
+.++..+.
T Consensus 415 i~~v~~~D 422 (432)
T COG2265 415 IERVQPFD 422 (432)
T ss_pred EEEEEEec
Confidence 76666543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.4e-06 Score=80.27 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=87.2
Q ss_pred CCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC----C-------------------------------
Q 022929 89 NPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV----D------------------------------- 133 (290)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----~------------------------------- 133 (290)
.+.+..+.++..++.......++..++|.+||+|.++++.+... |
T Consensus 169 ~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 169 GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 44567788888888776653467899999999999998886531 0
Q ss_pred -------CCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCC--CCCccEEEecCccc-ccC---CHHHHHH
Q 022929 134 -------AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP--TDYADRYVSAGSIE-YWP---DPQRGIR 196 (290)
Q Consensus 134 -------~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~--~~~~D~i~~~~~l~-~~~---~~~~~l~ 196 (290)
..+++|+|+++.+++.|++|... ..+++.++|+.+++.+ .+++|+|+++--.. .+. +...+.+
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYS 328 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence 13699999999999999998543 2478999999877543 34699999973321 111 2233444
Q ss_pred HHHhccC---CCCEEEEEcc
Q 022929 197 EAYRVLK---LGGKACIIGP 213 (290)
Q Consensus 197 ~~~~~L~---pgG~l~i~~~ 213 (290)
.+.+.++ +|+.+++.+.
T Consensus 329 ~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 329 QLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHhCCCCeEEEEeC
Confidence 4444443 8888877654
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=70.25 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhC----CCCeEEEEeCCHHHHHHHhhhCC-C--CCceE--EEcCCCC----CCC--CCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEP-L--KECKI--VEGDAED----LPF--PTD 174 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~----~~~~v~~vD~s~~~~~~a~~~~~-~--~~v~~--~~~d~~~----l~~--~~~ 174 (290)
++..|+|+|||+|.-+..+++.+ ....|+++|+|.++++.+.++.. . +.+++ +++|..+ ++- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 66789999999998766655543 24789999999999999988765 2 34554 7777744 221 122
Q ss_pred CccEEEe-cCcccccCCHH--HHHHHHHh-ccCCCCEEEEEc
Q 022929 175 YADRYVS-AGSIEYWPDPQ--RGIREAYR-VLKLGGKACIIG 212 (290)
Q Consensus 175 ~~D~i~~-~~~l~~~~~~~--~~l~~~~~-~L~pgG~l~i~~ 212 (290)
...+++. .+++.+++..+ .+|+++++ .|+|||.+++..
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 3455554 45777776554 69999999 999999988854
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.6e-06 Score=66.57 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=84.3
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC--ceEEEcCCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTD 174 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--v~~~~~d~~~l~~~~~ 174 (290)
+.+.+++.-... .+++|||+|+|+|..++..++. +...|+..|+.+.....++-|...+. +.+...|.-. .+.
T Consensus 67 lAR~i~~~PetV-rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~ 141 (218)
T COG3897 67 LARYIDDHPETV-RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPP 141 (218)
T ss_pred HHHHHhcCcccc-ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCc
Confidence 344445544433 7899999999999999988887 35789999999888888877766554 5566666644 344
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF 218 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 218 (290)
.||+++...++..-+-..+++.-..++...|-.+++-++.....
T Consensus 142 ~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 142 AFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred ceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 59999999888766666677775555555666677777766554
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-06 Score=71.13 Aligned_cols=115 Identities=19% Similarity=0.216 Sum_probs=68.3
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----------C--CCCCceEEEc
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------E--PLKECKIVEG 164 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----------~--~~~~v~~~~~ 164 (290)
....+++.+... +++..+|+|||.|.....++...+-.+.+|||+.+...+.|+.. . ....+++..+
T Consensus 30 ~~~~il~~~~l~-~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 30 FVSKILDELNLT-PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHhCCC-CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 344555666553 78999999999999988888776556799999999877776542 1 1235778888
Q ss_pred CCCCCCCCC---CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 165 DAEDLPFPT---DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 165 d~~~l~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
|+.+.++.. ...|+|++++... -++....+.+....||+|.+++-..+
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred CccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 886533111 2379999988753 23344556777788898888765433
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-05 Score=66.31 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=83.9
Q ss_pred EEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCC-CccEEEecCccccc
Q 022929 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTD-YADRYVSAGSIEYW 188 (290)
Q Consensus 114 vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~-~~D~i~~~~~l~~~ 188 (290)
|.||||..|.+...|.+.....+++++|+++.-++.|+++.. ..++++..+|-.+ ++..+ ..|.|+...+-..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHHH
Confidence 689999999999999999655789999999999999987733 3469999999654 22333 37888876654321
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..+++++....++....+++.. .. ....++.+|.+.||.+++..-+.+
T Consensus 80 --I~~ILe~~~~~~~~~~~lILqP-~~-----------------~~~~LR~~L~~~gf~I~~E~lv~e 127 (205)
T PF04816_consen 80 --IIEILEAGPEKLSSAKRLILQP-NT-----------------HAYELRRWLYENGFEIIDEDLVEE 127 (205)
T ss_dssp --HHHHHHHTGGGGTT--EEEEEE-SS------------------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --HHHHHHhhHHHhccCCeEEEeC-CC-----------------ChHHHHHHHHHCCCEEEEeEEEeE
Confidence 2357777777776655666543 22 457899999999999988877643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.7e-05 Score=61.64 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=94.7
Q ss_pred ccHHHHHhhccccC--CCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCH----HHHHHHhhhCCCCCceEEEcC
Q 022929 93 WTEDMRDDALEPAD--LSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSP----HQLAKAKQKEPLKECKIVEGD 165 (290)
Q Consensus 93 ~~~~~~~~~l~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~----~~~~~a~~~~~~~~v~~~~~d 165 (290)
+...+...++..+. ...++.+||-+|+.+|....+++.-.+ .+.|++|+.|+ +.+..|++ +.|+--+..|
T Consensus 54 ~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~D 130 (229)
T PF01269_consen 54 FRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILED 130 (229)
T ss_dssp TT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-
T ss_pred hhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeecc
Confidence 34455555544432 224899999999999999999999865 68999999999 45555664 3578778899
Q ss_pred CCCCC---CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 166 AEDLP---FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 166 ~~~l~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
+.... ..-+.+|+|++.-. .-.+.+-++.++...||+||.+++.--... .......... ..+-.+.|+
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~s-iD~t~~p~~v------f~~e~~~L~ 201 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARS-IDSTADPEEV------FAEEVKKLK 201 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHH-H-SSSSHHHH------HHHHHHHHH
T ss_pred CCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCc-ccCcCCHHHH------HHHHHHHHH
Confidence 86521 12236999997432 112223577888899999999988632100 0000000000 133456778
Q ss_pred HCCCcEEEEEEcCccc
Q 022929 243 KAGFKDVQLKRIGPKW 258 (290)
Q Consensus 243 ~aGf~~v~~~~~~~~~ 258 (290)
+.||++.+...+.+..
T Consensus 202 ~~~~~~~e~i~LePy~ 217 (229)
T PF01269_consen 202 EEGFKPLEQITLEPYE 217 (229)
T ss_dssp CTTCEEEEEEE-TTTS
T ss_pred HcCCChheEeccCCCC
Confidence 8899999998886643
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.9e-05 Score=67.95 Aligned_cols=109 Identities=22% Similarity=0.274 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCccchhHHHHHhhCCC--CeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC---CCCCCccEE
Q 022929 108 SNRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP---FPTDYADRY 179 (290)
Q Consensus 108 ~~~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~---~~~~~~D~i 179 (290)
..++.+|||..++.|.=+..+++..++ ..|+++|.++.-+...+++.. ..++.....|...++ ...++||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 358899999999999999999988654 567999999988888877644 345667777775443 222359999
Q ss_pred Ee------cCcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 180 VS------AGSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 180 ~~------~~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
+. ..++.--|+ ..++|+.+.++|||||.|+.+++...
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 87 233322222 12689999999999999999887653
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.6e-06 Score=75.42 Aligned_cols=103 Identities=26% Similarity=0.282 Sum_probs=87.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++..++|+|||.|.....++.. ....++|+|.++..+..+..... .+...++..|+-.-|+++..||.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 6678999999999998888776 46899999999988877765421 223345788888889999999999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+|.++....++++.++++|||..+..+.
T Consensus 189 ~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 189 CHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 9999999999999999999999988654
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-05 Score=69.61 Aligned_cols=142 Identities=23% Similarity=0.194 Sum_probs=100.2
Q ss_pred cccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC----CceE
Q 022929 86 HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKI 161 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~v~~ 161 (290)
-++.|+..++..+ ++... .+|.+|||.=||-|.+++.+++.. ...|+++|++|.+++..++|...+ .+..
T Consensus 169 v~Fsprl~~ER~R--va~~v---~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~ 242 (341)
T COG2520 169 VYFSPRLSTERAR--VAELV---KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEP 242 (341)
T ss_pred eEECCCchHHHHH--HHhhh---cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeE
Confidence 4555554444432 23333 268999999999999999999983 334999999999999999886543 3778
Q ss_pred EEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHH
Q 022929 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWF 241 (290)
Q Consensus 162 ~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 241 (290)
+++|..........+|-|++...- +.+.++..+.+.+++||.+..-+......... .....+.+..
T Consensus 243 i~gD~rev~~~~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~----------~~~~~i~~~~ 308 (341)
T COG2520 243 ILGDAREVAPELGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE----------RPEKRIKSAA 308 (341)
T ss_pred EeccHHHhhhccccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccchhhccc----------chHHHHHHHH
Confidence 999998776554669999987543 34568888999999999987765544321100 1245666777
Q ss_pred HHCCCc
Q 022929 242 QKAGFK 247 (290)
Q Consensus 242 ~~aGf~ 247 (290)
.+.|++
T Consensus 309 ~~~~~~ 314 (341)
T COG2520 309 RKGGYK 314 (341)
T ss_pred hhccCc
Confidence 777764
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.2e-05 Score=65.34 Aligned_cols=131 Identities=19% Similarity=0.264 Sum_probs=92.6
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCCCCCCC--CC
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFP--TD 174 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~~l~~~--~~ 174 (290)
+..+.. .++.+|||-|+|+|.++..+++.. |..+++.+|+-+.-.+.|.+.+ -..++++..-|++..-|. +.
T Consensus 98 ~~~L~i-~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 98 LSMLEI-RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHhcC-CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 444444 389999999999999999999885 4589999999877666666543 246789999999765433 45
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCE-EEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~-l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
.+|.|+. .++.|...+-.+..+||.+|. ++-.+++... .+.-.+.|+++||..++..+
T Consensus 177 ~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSPCIEQ----------------vqrtce~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 177 KADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQ----------------VQRTCEALRSLGFIEIETVE 235 (314)
T ss_pred ccceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccHHHHH----------------HHHHHHHHHhCCCceEEEEE
Confidence 6888885 467777777888889998774 4333332211 12334678888997666655
Q ss_pred c
Q 022929 254 I 254 (290)
Q Consensus 254 ~ 254 (290)
+
T Consensus 236 v 236 (314)
T KOG2915|consen 236 V 236 (314)
T ss_pred e
Confidence 4
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-06 Score=70.11 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------C--C--CCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------P--F--PTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~--~--~~~~~D~ 178 (290)
++.+|||+||++|.++..+.++. +..+|+|+|+.+.. ..+++.++++|+.+. . + ..+++|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------cccceeeeecccchhhHHHhhhhhccccccCcce
Confidence 45899999999999999999985 45899999997651 113444445554221 1 1 1257999
Q ss_pred EEecCcccccCCH-----------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 179 YVSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 179 i~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
|+|........+. ...+.-+...|+|||.+++....... . +++...++. .|+
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~---------------~-~~~~~~l~~-~F~ 157 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE---------------I-EELIYLLKR-CFS 157 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT---------------S-HHHHHHHHH-HHH
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc---------------H-HHHHHHHHh-CCe
Confidence 9997644333221 13455566789999988876543221 1 245555554 566
Q ss_pred EEEEEEc
Q 022929 248 DVQLKRI 254 (290)
Q Consensus 248 ~v~~~~~ 254 (290)
.+.+.+.
T Consensus 158 ~v~~~Kp 164 (181)
T PF01728_consen 158 KVKIVKP 164 (181)
T ss_dssp HEEEEE-
T ss_pred EEEEEEC
Confidence 6666553
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.9e-05 Score=62.30 Aligned_cols=131 Identities=21% Similarity=0.211 Sum_probs=88.1
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------- 170 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-------- 170 (290)
++.+...+..++..|+|+|+-+|.++..+++..+. ..|+++|+.+-. ...++.++++|+...+
T Consensus 35 el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------~~~~V~~iq~d~~~~~~~~~l~~~ 106 (205)
T COG0293 35 ELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------PIPGVIFLQGDITDEDTLEKLLEA 106 (205)
T ss_pred HHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------cCCCceEEeeeccCccHHHHHHHH
Confidence 33444555568999999999999999999988643 559999994422 2246899999997643
Q ss_pred CCCCCccEEEecCcc---ccc--CCH------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHH
Q 022929 171 FPTDYADRYVSAGSI---EYW--PDP------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIE 239 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l---~~~--~~~------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
+....+|+|+|...- .+. .++ ...+.-+..+|+|||.+++-.+-.. ..+++.+
T Consensus 107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~----------------~~~~~l~ 170 (205)
T COG0293 107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE----------------DFEDLLK 170 (205)
T ss_pred cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC----------------CHHHHHH
Confidence 444557999974332 111 111 2466677789999999988755433 2344555
Q ss_pred HHHHCCCcEEEEEEcC
Q 022929 240 WFQKAGFKDVQLKRIG 255 (290)
Q Consensus 240 ll~~aGf~~v~~~~~~ 255 (290)
.+++ .|+.+++....
T Consensus 171 ~~~~-~F~~v~~~KP~ 185 (205)
T COG0293 171 ALRR-LFRKVKIFKPK 185 (205)
T ss_pred HHHH-hhceeEEecCc
Confidence 5554 58877776643
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-05 Score=69.15 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-------CCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCCCCC--CC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-------DAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPFP--TD 174 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-------~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l~~~--~~ 174 (290)
.++.+|+|.+||+|.++..+.+.. +...++|+|+++.+...++-+.. ..+..+..+|....+.. ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 367799999999999998887742 57899999999999998876521 12245778887544322 46
Q ss_pred CccEEEecCccccc--C------------------CH-HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCC
Q 022929 175 YADRYVSAGSIEYW--P------------------DP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233 (290)
Q Consensus 175 ~~D~i~~~~~l~~~--~------------------~~-~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (290)
+||+|+++--+... . +. -.++..+.+.|++||++.++.+..- .+.. ..
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~------L~~~-----~~ 193 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF------LFSS-----SS 193 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH------HHGS-----TH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh------hhcc-----ch
Confidence 79999994211111 0 01 1578889999999999877654210 0000 01
Q ss_pred HHHHHHHHHHCCCcEEEEEEcCcccccc
Q 022929 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (290)
Q Consensus 234 ~~~~~~ll~~aGf~~v~~~~~~~~~~~~ 261 (290)
...+++.|-+.+. +..+..++......
T Consensus 194 ~~~iR~~ll~~~~-i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 194 EKKIRKYLLENGY-IEAVISLPSNLFKP 220 (311)
T ss_dssp HHHHHHHHHHHEE-EEEEEE--TTSSSS
T ss_pred HHHHHHHHHhhch-hhEEeecccceecc
Confidence 3567766666544 67778887655444
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-05 Score=68.38 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=89.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----------CCCCCceEEEcCCCCC-CCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EPLKECKIVEGDAEDL-PFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----------~~~~~v~~~~~d~~~l-~~~~~~~D~ 178 (290)
...+||-+|.|.|..+..+.+.-+..+++-+|++|.|++.++++ ...++++++..|.... .-..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 45789999999999999998873368999999999999999854 2235688888888653 223346999
Q ss_pred EEecCcccccCCH----------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 179 YVSAGSIEYWPDP----------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 179 i~~~~~l~~~~~~----------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
|+.. ++|| .++..-+.+.|+++|.+++.....-. ..+ .--.+...++++||.+
T Consensus 369 vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~--tp~----------vfw~i~aTik~AG~~~ 431 (508)
T COG4262 369 VIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF--TPR----------VFWRIDATIKSAGYRV 431 (508)
T ss_pred EEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc--CCc----------eeeeehhHHHhCccee
Confidence 9863 2332 25778889999999999886422100 000 1123456788899876
Q ss_pred EEEEE
Q 022929 249 VQLKR 253 (290)
Q Consensus 249 v~~~~ 253 (290)
.-...
T Consensus 432 ~Pyhv 436 (508)
T COG4262 432 WPYHV 436 (508)
T ss_pred eeeEE
Confidence 55544
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00031 Score=56.98 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=100.5
Q ss_pred cccHHHHHhhccccC--CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh-CCCCCceEEEcCCCC
Q 022929 92 HWTEDMRDDALEPAD--LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAED 168 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~v~~~~~d~~~ 168 (290)
++...+...++.-+. ..+++.+||=+|+-+|....+++.-.+...+++++.|+......-.. ..++|+--+..|+..
T Consensus 56 p~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~ 135 (231)
T COG1889 56 PRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARK 135 (231)
T ss_pred cchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCC
Confidence 345666666666543 23589999999999999999999998878999999998654433222 124677778889866
Q ss_pred CC---CCCCCccEEEecCcccccCCH---HHHHHHHHhccCCCCEEEEEccCC--Cch-hHhhhhHHHhhcCCCHHHHHH
Q 022929 169 LP---FPTDYADRYVSAGSIEYWPDP---QRGIREAYRVLKLGGKACIIGPVY--PTF-WLSRYFADVWMLFPKEEEYIE 239 (290)
Q Consensus 169 l~---~~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (290)
.. .--+..|+|+.. +..+ +-+..++...||+||.+++.--.. +.. ..... ..+-.+
T Consensus 136 P~~Y~~~Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~v----------f~~ev~ 200 (231)
T COG1889 136 PEKYRHLVEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEV----------FKDEVE 200 (231)
T ss_pred cHHhhhhcccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHH----------HHHHHH
Confidence 32 222458999853 3233 247788999999999877752211 100 00111 123346
Q ss_pred HHHHCCCcEEEEEEcCcc
Q 022929 240 WFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 240 ll~~aGf~~v~~~~~~~~ 257 (290)
.|++.||++.+...+.+.
T Consensus 201 kL~~~~f~i~e~~~LePy 218 (231)
T COG1889 201 KLEEGGFEILEVVDLEPY 218 (231)
T ss_pred HHHhcCceeeEEeccCCc
Confidence 678889999999888653
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.2e-05 Score=60.94 Aligned_cols=162 Identities=19% Similarity=0.103 Sum_probs=100.3
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHH----------HHHHhhhCCCCCceEEEcCCCCCC
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQ----------LAKAKQKEPLKECKIVEGDAEDLP 170 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~----------~~~a~~~~~~~~v~~~~~d~~~l~ 170 (290)
|...++. ++.+|+|+-.|.|.++.-+....+ ...|+++-..+.. -..+++ ....|++.+..+...+.
T Consensus 41 L~FaGlk-pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 41 LAFAGLK-PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVYANVEVIGKPLVALG 118 (238)
T ss_pred eEEeccC-CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-hhhhhhhhhCCcccccC
Confidence 4444554 899999999999999999888753 3567776543321 111111 11235555555555554
Q ss_pred CCCCCccEEEecCccccc-------CCHHHHHHHHHhccCCCCEEEEEccCCCc-hhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 171 FPTDYADRYVSAGSIEYW-------PDPQRGIREAYRVLKLGGKACIIGPVYPT-FWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
+....|+++....-|.+ ....++...+.+.|||||.+.++++.... ..... .....+.+...++...+
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d---t~~~~ri~~a~V~a~ve 194 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD---TITLHRIDPAVVIAEVE 194 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh---hhhhcccChHHHHHHHH
Confidence 33447777664333222 22457899999999999999999876543 11111 11223457888999999
Q ss_pred HCCCcEEEEEEcC--ccccccccccccee
Q 022929 243 KAGFKDVQLKRIG--PKWYRGVRRHGLIM 269 (290)
Q Consensus 243 ~aGf~~v~~~~~~--~~~~~~~~~~~~~~ 269 (290)
.+||...-..++. +.--.++|.++-+.
T Consensus 195 aaGFkl~aeS~ilaNp~D~~~i~v~dp~~ 223 (238)
T COG4798 195 AAGFKLEAESEILANPDDPRGIWVFDPTI 223 (238)
T ss_pred hhcceeeeeehhhcCCCCCCceeecCccc
Confidence 9999887776664 33334555554443
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=71.85 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=78.1
Q ss_pred CCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCC-CCCCCccEEEecCcc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~-~~~~~~D~i~~~~~l 185 (290)
+.+|||..||+|..++.++...+ ..+|+++|+++++++.+++|...+ ++++++.|+..+- ....+||+|...- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 36899999999999999998753 478999999999999999886433 4678888886532 1234699998743 2
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..+..++..+.+.++++|.|++...
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 3445799999999999999999744
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00011 Score=64.71 Aligned_cols=87 Identities=22% Similarity=0.204 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.++.++||+||++|.++..+++. +.+|++||..+ +- ......++|..+..|........+.+|.++|..+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l~---~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve--- 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-MA---QSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE--- 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-cC---HhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---
Confidence 47899999999999999999998 77999999644 22 22233467888888875543225679999987664
Q ss_pred CCHHHHHHHHHhccCCC
Q 022929 189 PDPQRGIREAYRVLKLG 205 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pg 205 (290)
.|.++++-+.++|..|
T Consensus 281 -~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 -KPARVAELMAQWLVNG 296 (357)
T ss_pred -CHHHHHHHHHHHHhcC
Confidence 5778888888888766
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.2e-05 Score=67.81 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=76.0
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~ 173 (290)
..+.+.+++.+... ++..|||||+|.|.++..+++. +.+++++|+++...+..++... ..+++++.+|+.++....
T Consensus 16 ~~~~~~Iv~~~~~~-~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 16 PNIADKIVDALDLS-EGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHHTCG-TTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHHhcCCC-CCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence 45666777766654 7899999999999999999999 4899999999999999998765 568999999998876543
Q ss_pred ---CCccEEEecCcccccCCHHHHHHHHHhccCC
Q 022929 174 ---DYADRYVSAGSIEYWPDPQRGIREAYRVLKL 204 (290)
Q Consensus 174 ---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 204 (290)
.....|+++--. ++ ...++.++...-+.
T Consensus 93 ~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp HCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred hhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 234456654222 22 23566666663333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.8e-05 Score=73.87 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=51.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC--------CCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCC-----CCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDL-----PFPT 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l-----~~~~ 173 (290)
...+|||.|||+|.++..+++..+ ...++|+|+++.++..++.+.... .+.+...|.... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 356999999999999999887653 257899999999999998774321 234444443211 1112
Q ss_pred CCccEEEec
Q 022929 174 DYADRYVSA 182 (290)
Q Consensus 174 ~~~D~i~~~ 182 (290)
+.||+|+++
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 469999985
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-06 Score=65.07 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=59.1
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHH
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ 192 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~ 192 (290)
-.+-||||. .+..|++..+-++-.+ .+.+++-.....+|.+++.|+|++.++++|+.-.+
T Consensus 5 ~kv~ig~G~-------~r~npgWi~~d~ed~~-------------~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E 64 (185)
T COG4627 5 EKVKIGAGG-------KRVNPGWIITDVEDRP-------------EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE 64 (185)
T ss_pred eEEEEeccc-------cccCCCceeeehhccc-------------ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH
Confidence 467789997 3445666655333211 23333333345578899999999999999996543
Q ss_pred --HHHHHHHhccCCCCEEEEEccCC
Q 022929 193 --RGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 193 --~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
..++++++.|||||+|-+..+..
T Consensus 65 g~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 65 GTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred HHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 79999999999999999986643
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.4e-05 Score=62.37 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=68.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----------CCCceEEEcCCCC-CCCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----------LKECKIVEGDAED-LPFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----------~~~v~~~~~d~~~-l~~~~~~~D~ 178 (290)
+...+.|||||.|.++..++..+|+.-+.|.+|--.+.+..+++.. ..|+.....+... +| +-|.-
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~k 136 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFEK 136 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc---chhhh
Confidence 3467999999999999999999999999999997766666655411 2345555554432 12 11222
Q ss_pred EEecCcccccCCHH-------------HHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQ-------------RGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~-------------~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
-...-.+...++++ .++.+..-+|++||.++.++...
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 22222333344442 47888889999999999886543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.8e-05 Score=65.97 Aligned_cols=122 Identities=16% Similarity=0.082 Sum_probs=88.1
Q ss_pred CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC--------------------------------C--
Q 022929 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA--------------------------------K-- 135 (290)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--------------------------------~-- 135 (290)
+.+..+.++..++...+-. ++..++|-=||+|.++++.+...++ .
T Consensus 172 ~ApLketLAaAil~lagw~-~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~ 250 (381)
T COG0116 172 PAPLKETLAAAILLLAGWK-PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR 250 (381)
T ss_pred CCCchHHHHHHHHHHcCCC-CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence 4466778888877776654 6679999999999999998876431 1
Q ss_pred -----eEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCccc-ccCC-------HHHHHHHH
Q 022929 136 -----NVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIE-YWPD-------PQRGIREA 198 (290)
Q Consensus 136 -----~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~-~~~~-------~~~~l~~~ 198 (290)
.++|+|+++.+++.|+.|+.. .-|+|.+.|+..++-+-+.+|+|+|+--.- -+.+ +..+.+.+
T Consensus 251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence 378999999999999988543 348999999988764435699999963211 1111 12455566
Q ss_pred HhccCCCCEEEEEc
Q 022929 199 YRVLKLGGKACIIG 212 (290)
Q Consensus 199 ~~~L~pgG~l~i~~ 212 (290)
.+.++.-+..++++
T Consensus 331 k~~~~~ws~~v~tt 344 (381)
T COG0116 331 KRLLAGWSRYVFTT 344 (381)
T ss_pred HHHhcCCceEEEEc
Confidence 67777667777764
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.4e-05 Score=62.19 Aligned_cols=146 Identities=22% Similarity=0.201 Sum_probs=94.5
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCce-EEEcCCCCCC---CCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECK-IVEGDAEDLP---FPTDY 175 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~-~~~~d~~~l~---~~~~~ 175 (290)
.+++......++..+||||+.+|.++..+.++ +..+|+++|.....+..--++- +++. +-..|+..+. +.+ .
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~d--~rV~~~E~tN~r~l~~~~~~~-~ 144 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRND--PRVIVLERTNVRYLTPEDFTE-K 144 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhcC--CcEEEEecCChhhCCHHHccc-C
Confidence 44555555568999999999999999999988 4689999999876665543322 2322 3334554332 333 5
Q ss_pred ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh-------hHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY-------FADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
.|+++|.-++-. ...+|..+..+++|++.++...- |.+...+- ..+...+..-..++.+++.+.||++
T Consensus 145 ~d~~v~DvSFIS---L~~iLp~l~~l~~~~~~~v~LvK--PQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 145 PDLIVIDVSFIS---LKLILPALLLLLKDGGDLVLLVK--PQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred CCeEEEEeehhh---HHHHHHHHHHhcCCCceEEEEec--chhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 889998765543 34689999999999998876421 11111110 1111111113578889999999998
Q ss_pred EEEEEc
Q 022929 249 VQLKRI 254 (290)
Q Consensus 249 v~~~~~ 254 (290)
..+...
T Consensus 220 ~gl~~S 225 (245)
T COG1189 220 KGLIKS 225 (245)
T ss_pred eeeEcc
Confidence 887654
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.6e-05 Score=63.01 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=79.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCC-CC-----CCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LP-----FPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~-l~-----~~~~~~D~ 178 (290)
.++++||||.=+|.-++.++...| +++|+++|++++..+.+..... ...+++++++..+ ++ ...+.||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 578999999999999999988877 4899999999999988865422 3468888887743 21 34567999
Q ss_pred EEecCccccc-CCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 179 YVSAGSIEYW-PDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 179 i~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
++.. ++ .++....+++.+++++||.+++-...++
T Consensus 153 aFvD----adK~nY~~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 153 AFVD----ADKDNYSNYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred EEEc----cchHHHHHHHHHHHhhcccccEEEEeccccC
Confidence 9853 33 3445788999999999999988654433
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.9e-05 Score=62.06 Aligned_cols=101 Identities=22% Similarity=0.224 Sum_probs=79.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCC--CCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDL--PFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~l 185 (290)
++.+||+||-|-|.....+.+..| .+-+.++..++.+++.++..- ..|+..+.+-.++. .++++.||-|+...--
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 799999999999999888887754 566789999999999998743 34666666655432 3677889999976655
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+-.+...+.+.+.++|||+|++-..
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 66666677888999999999998654
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00017 Score=62.28 Aligned_cols=168 Identities=17% Similarity=0.097 Sum_probs=101.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHH-------HhhhCC----------------CC---------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-------AKQKEP----------------LK--------- 157 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-------a~~~~~----------------~~--------- 157 (290)
...+||--|||.|.++..++.. +..+-|-+.|--|+-- .+.... .+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 4678999999999999999988 6667777776554422 111000 00
Q ss_pred -----------CceEEEcCCCCC---CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh
Q 022929 158 -----------ECKIVEGDAEDL---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (290)
Q Consensus 158 -----------~v~~~~~d~~~l---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~ 223 (290)
....-.+|+.+. +-..+.||+|+.++.+....+.-..++.+..+|||||+-+=..|..-.+....-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 011122444221 111246999998877777777778999999999999987655443211100000
Q ss_pred hHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccccccccc--cceeeeEEEEecCC
Q 022929 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRH--GLIMGCSVTGVKPA 279 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~--~~~~~~~~~a~k~~ 279 (290)
..+.-..-.+.+++..+++..||++++.+.+...+...-++. ..+....++.||+.
T Consensus 308 ~~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~nprsm~~~~Y~~~yw~~rk~~ 365 (369)
T KOG2798|consen 308 VENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGTNPRSMMENRYQCHYWVLRKPC 365 (369)
T ss_pred CcccccccccHHHHHHHHHhcCcEEEEeeeeecccCCCHHHHhhhcccceeEEEeccc
Confidence 000111124789999999999999998886654443221111 22334456777764
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.6e-05 Score=67.85 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=83.2
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
+++.+|||.-.+...+.+. +...++.+|+|+..++....+.. .....+...|+..+.|++++||+|+....++++-.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999999888887 35789999999999988876542 34478889999999999999999999988887732
Q ss_pred H----------HHHHHHHHhccCCCCEEEEEcc
Q 022929 191 P----------QRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 191 ~----------~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...+.++.++|++||+++....
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2 2467899999999999877655
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.2e-05 Score=61.78 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=76.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
..+.+.|+|+|+|.++...++. ..+|++++.++...+.|.+|.. ..+++++.+|+.+..|. ..|+|+|-..=.
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe--~ADvvicEmlDT 107 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE--NADVVICEMLDT 107 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc--ccceeHHHHhhH
Confidence 3478999999999999888887 6799999999999999999843 35799999999988873 389999853322
Q ss_pred cc--CCHHHHHHHHHhccCCCCEEEEE
Q 022929 187 YW--PDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 187 ~~--~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+ .....+++.+...|+.++.++-.
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCccccH
Confidence 11 22236888888899999888643
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.7e-05 Score=59.63 Aligned_cols=103 Identities=20% Similarity=0.102 Sum_probs=69.8
Q ss_pred cCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-CCCCC--------CCCCC
Q 022929 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDL--------PFPTD 174 (290)
Q Consensus 105 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d~~~l--------~~~~~ 174 (290)
..+.+++.+|||+||-+|.++....++. |...|.|||+-. -.+..++.++++ |+.+. .+++.
T Consensus 64 y~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 64 YRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------IEPPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred ccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------ccCCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 4455689999999999999999988886 889999999821 122345666665 66542 15667
Q ss_pred CccEEEecCccccc----CCHH-------HHHHHHHhccCCCCEEEEEccCC
Q 022929 175 YADRYVSAGSIEYW----PDPQ-------RGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 175 ~~D~i~~~~~l~~~----~~~~-------~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+.|+|++.+.-... .|-. ..+.-....++|+|.++.-....
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 89999985443211 1111 24444456778999998865443
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.8e-05 Score=62.77 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=50.3
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCC--CCCCC-ccEEEe
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP--FPTDY-ADRYVS 181 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~--~~~~~-~D~i~~ 181 (290)
..|+|+.||.|..++.+++. ..+|+++|+++..++.|+.|+. ..+++++++|..++. +.... +|+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 36999999999999999999 5689999999999999998832 457999999996542 22122 799997
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.9e-05 Score=67.93 Aligned_cols=71 Identities=32% Similarity=0.454 Sum_probs=51.5
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED 168 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~ 168 (290)
.+.+...+++.+... ++ .|||+-||.|.++..+++. ..+|+|+|+++++++.|++++.. .|++|+.+++++
T Consensus 182 ~~~l~~~~~~~l~~~-~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 182 NEKLYEQALEWLDLS-KG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHHCTT--TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHHhhcC-CC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 345555666666543 33 8999999999999999998 57999999999999999988543 468898877643
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00028 Score=60.81 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=62.8
Q ss_pred CCEEEEEcCcc-chhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 111 NMLVVDVGGGT-GFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 111 ~~~vLDiG~G~-G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
+.+|+=||||+ -..++.+++. .++..++++|+++++.+.+++... ..++.|+.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999997 4445555554 346789999999999999987533 3578999999877654435699998765
Q ss_pred ccc-ccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 184 SIE-YWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 184 ~l~-~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
... .-.+..++++++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 443 3346678999999999999999875
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=63.23 Aligned_cols=106 Identities=23% Similarity=0.286 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCC--CCCCCCccEEEe-
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL--PFPTDYADRYVS- 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l--~~~~~~~D~i~~- 181 (290)
.++.+|||++++.|.-+..+++..+ ...+++.|+++.-+...+++ ....++.....|.... ......||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 4789999999999999999999876 58999999999988887765 4445666676676543 122335999987
Q ss_pred -----cCcccccCCH----------------HHHHHHHHhcc----CCCCEEEEEccC
Q 022929 182 -----AGSIEYWPDP----------------QRGIREAYRVL----KLGGKACIIGPV 214 (290)
Q Consensus 182 -----~~~l~~~~~~----------------~~~l~~~~~~L----~pgG~l~i~~~~ 214 (290)
..++..-++. .++|+.+.+.+ ||||.++.+++.
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 1222222321 26899999999 999999998764
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=62.54 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=65.4
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC----
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP---- 170 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~---- 170 (290)
+.+.+++.+.. .++..++|.-+|.|..+..+++..+..+++|+|.++.+++.++++... .++++++++..++.
T Consensus 8 ll~Evl~~L~~-~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 8 LLDEVVEGLNI-KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hHHHHHHhcCc-CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 34455555544 377899999999999999999987678999999999999999887542 46888998886542
Q ss_pred -CCCCCccEEEe
Q 022929 171 -FPTDYADRYVS 181 (290)
Q Consensus 171 -~~~~~~D~i~~ 181 (290)
....++|.|+.
T Consensus 87 ~~~~~~vDgIl~ 98 (305)
T TIGR00006 87 ELLVTKIDGILV 98 (305)
T ss_pred hcCCCcccEEEE
Confidence 22346888887
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=56.98 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=45.9
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCC
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED 168 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~ 168 (290)
+++|||||.|.++..+++..+..+++++|+++.+.+.++++... .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999987778999999999999999877432 346777666543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=53.56 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=89.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
.+.++.||||..+.+...+.+..+...+++.|+++..++.|.+++.. .+++...+|....=-.++.+|+|+...+-
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 56669999999999999999998889999999999999999877553 34667777774422234469999876654
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.. -...++++-.+.|+.=-.+++. |.. ...+++++|...+|++....-+.+
T Consensus 96 G~--lI~~ILee~~~~l~~~~rlILQ-Pn~-----------------~~~~LR~~L~~~~~~I~~E~ileE 146 (226)
T COG2384 96 GT--LIREILEEGKEKLKGVERLILQ-PNI-----------------HTYELREWLSANSYEIKAETILEE 146 (226)
T ss_pred HH--HHHHHHHHhhhhhcCcceEEEC-CCC-----------------CHHHHHHHHHhCCceeeeeeeecc
Confidence 31 1235666666666533344443 322 456888999999998776555443
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0014 Score=59.33 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=84.8
Q ss_pred CCEEEEEcCccchhHHHHHh--------h-------CCCCeEEEEeCCHH-HHHHHh------hhC---------CCCCc
Q 022929 111 NMLVVDVGGGTGFTTLGIVK--------H-------VDAKNVTILDQSPH-QLAKAK------QKE---------PLKEC 159 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~--------~-------~~~~~v~~vD~s~~-~~~~a~------~~~---------~~~~v 159 (290)
..+|+|+|||+|..+..+.. + .|..++..-|+-.. .-...+ +.. ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999977654421 1 23467777777421 111111 000 00011
Q ss_pred eEE---EcCCCCCCCCCCCccEEEecCcccccCCH--------------------------------------HHHHHHH
Q 022929 160 KIV---EGDAEDLPFPTDYADRYVSAGSIEYWPDP--------------------------------------QRGIREA 198 (290)
Q Consensus 160 ~~~---~~d~~~l~~~~~~~D~i~~~~~l~~~~~~--------------------------------------~~~l~~~ 198 (290)
-|+ .+++..--||.++.+++++.+++||++.. ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 23333334888999999999999998631 0244444
Q ss_pred HhccCCCCEEEEEccCCCc-----------hh---HhhhhHHHh----------------hcCCCHHHHHHHHHHCC-Cc
Q 022929 199 YRVLKLGGKACIIGPVYPT-----------FW---LSRYFADVW----------------MLFPKEEEYIEWFQKAG-FK 247 (290)
Q Consensus 199 ~~~L~pgG~l~i~~~~~~~-----------~~---~~~~~~~~~----------------~~~~~~~~~~~ll~~aG-f~ 247 (290)
.+-|.|||.+++.....+. .+ ....+.++. ..+++.+|+++.+++.| |+
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 5778899999997544321 00 111111111 12468999999999888 67
Q ss_pred EEEEEEcCc
Q 022929 248 DVQLKRIGP 256 (290)
Q Consensus 248 ~v~~~~~~~ 256 (290)
+.+++.+..
T Consensus 304 I~~le~~~~ 312 (386)
T PLN02668 304 IDKLEVFKG 312 (386)
T ss_pred eeeeEEeec
Confidence 766666543
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00042 Score=58.40 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=86.6
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPF 171 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~ 171 (290)
.+.+-..++..++ +..+|+|||||---++..+....++..|+|+|++..+++....... ..+.+....|+..-+
T Consensus 92 Ld~fY~~if~~~~---~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~- 167 (251)
T PF07091_consen 92 LDEFYDEIFGRIP---PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP- 167 (251)
T ss_dssp HHHHHHHHCCCS------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-
T ss_pred HHHHHHHHHhcCC---CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-
Confidence 4444445555443 5799999999999999888888778999999999999988876532 235567777886643
Q ss_pred CCCCccEEEecCcccccCCHHH-HHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQR-GIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~-~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
+....|+.+..-+++.+...+. .--++.+.+. .-.++++.+...-..-..-+...+ ...+.+++.+.|+. ++
T Consensus 168 ~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~y-----~~~fe~~~~~~~~~-~~ 240 (251)
T PF07091_consen 168 PKEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQTY-----SAWFEALAAERGWI-VD 240 (251)
T ss_dssp TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHHCH-----HHHHHHHCCTTCEE-EE
T ss_pred CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccccccCH-----HHHHHHhcccCCce-ee
Confidence 3455999998877776643321 1122222232 234555555443222222222211 36778888888887 44
Q ss_pred EEEcC
Q 022929 251 LKRIG 255 (290)
Q Consensus 251 ~~~~~ 255 (290)
...++
T Consensus 241 ~~~~~ 245 (251)
T PF07091_consen 241 RLTFG 245 (251)
T ss_dssp EEEET
T ss_pred eeecc
Confidence 44443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00012 Score=67.18 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=49.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAED 168 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~ 168 (290)
.+..++|+.||+|.+++.+++. ..+|+|++++++++..|++++..+ |.+|+++-.++
T Consensus 383 ~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 6789999999999999999998 689999999999999999987654 57899985544
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.48 E-value=1.6e-05 Score=58.71 Aligned_cols=96 Identities=19% Similarity=0.313 Sum_probs=41.2
Q ss_pred EEEcCccchhHHHHHhhCCC---CeEEEEeCCH---HHHHHHhhhCCCCCceEEEcCCCCC--CCCCCCccEEEecCccc
Q 022929 115 VDVGGGTGFTTLGIVKHVDA---KNVTILDQSP---HQLAKAKQKEPLKECKIVEGDAEDL--PFPTDYADRYVSAGSIE 186 (290)
Q Consensus 115 LDiG~G~G~~~~~l~~~~~~---~~v~~vD~s~---~~~~~a~~~~~~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~l~ 186 (290)
||||+..|..+..+++..+. .+++++|..+ ...+..++.....+++++.++..+. .+..+++|+++.-.. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 69999999988888776543 3799999998 4444444322235689999988432 133457999997543 2
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
..+.....++.+.+.|+|||.+++-
T Consensus 80 ~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2233446788899999999998774
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00039 Score=54.17 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCccchhHHHHHh-----hCCCCeEEEEeCCHHHHHHHhhhCC------CCCceEEEcCCCCCCCCCCCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVK-----HVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~-----~~~~~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~l~~~~~~~D 177 (290)
.+..+|+|+|||.|.++..++. . ++.+|+++|.++..++.+.++.. ..+..+...+..+... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 3678999999999999999998 5 57999999999998888876532 1345555555543222 33467
Q ss_pred EEEecCcccccCCH-HHHHHHHHhccCCCCEEE
Q 022929 178 RYVSAGSIEYWPDP-QRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 178 ~i~~~~~l~~~~~~-~~~l~~~~~~L~pgG~l~ 209 (290)
+++.-+. -.+. ..+++.+.+ ++-..+
T Consensus 102 ~~vgLHa---CG~Ls~~~l~~~~~---~~~~~l 128 (141)
T PF13679_consen 102 ILVGLHA---CGDLSDRALRLFIR---PNARFL 128 (141)
T ss_pred EEEEeec---ccchHHHHHHHHHH---cCCCEE
Confidence 7775333 2332 245555444 444443
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=56.56 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=62.8
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC---
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--- 170 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~--- 170 (290)
+...++..+... ++...+|.--|.|..+..+++.++. .+++|+|-++.+++.|++.... .++.+++.++.++.
T Consensus 11 Ll~E~i~~L~~~-~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 11 LLNEVVELLAPK-PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHHHhcccC-CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHH
Confidence 444555555543 7799999999999999999999875 5699999999999999987542 46788887775442
Q ss_pred --CCCCCccEEEe
Q 022929 171 --FPTDYADRYVS 181 (290)
Q Consensus 171 --~~~~~~D~i~~ 181 (290)
...+++|.|+.
T Consensus 90 ~~~~i~~vDGiL~ 102 (314)
T COG0275 90 KELGIGKVDGILL 102 (314)
T ss_pred HhcCCCceeEEEE
Confidence 22345666665
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00075 Score=55.50 Aligned_cols=138 Identities=11% Similarity=0.075 Sum_probs=68.5
Q ss_pred CCCEEEEEcCccchhHHHHHh---hC-CCCeEEEEeCCHHHHHHH-hh-hCCCCCceEEEcCCCCCC----C--CCCCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVK---HV-DAKNVTILDQSPHQLAKA-KQ-KEPLKECKIVEGDAEDLP----F--PTDYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~---~~-~~~~v~~vD~s~~~~~~a-~~-~~~~~~v~~~~~d~~~l~----~--~~~~~D 177 (290)
+++.|+|+|.-.|.-+..++. .. +..+|+|+|++-...... .+ .--..+++++++|..+.. . .....+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 678999999999887776654 33 568999999954333222 22 112368999999986642 1 111122
Q ss_pred -EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhc-CCCHHHHHHHHHHCC-Cc
Q 022929 178 -RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML-FPKEEEYIEWFQKAG-FK 247 (290)
Q Consensus 178 -~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~aG-f~ 247 (290)
++++-.+-|...+..+.|+....++++|+++++.+...........-...|.. --....+.+.|++.. |+
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~ 184 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFE 184 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEE
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcE
Confidence 34445555555677788889999999999999987654332222111111111 113567778888765 53
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00035 Score=57.41 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=65.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC----CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL----PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l----~~~~~~~D~i~~ 181 (290)
....|+|.-||-|..++.++.. +..|+++|+++.-+..|+.|+. .++++|+++|+.++ .+....+|+++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4578999999999999998888 5689999999999999999854 35799999999653 344444666665
Q ss_pred cCcccccCCHHHHHHHHHhccCCCC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGG 206 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG 206 (290)
.--...-.-...-+..+...++|.|
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhH
Confidence 3322211111233444555555554
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.01 Score=53.17 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=77.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhC----------------CCCeEEEEeCCH-HHHHHHhhh-------CCCCCc--eEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV----------------DAKNVTILDQSP-HQLAKAKQK-------EPLKEC--KIVE 163 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~----------------~~~~v~~vD~s~-~~~~~a~~~-------~~~~~v--~~~~ 163 (290)
..-+|+|+||.+|..+..+.... |..+|+.-|+-. +.-...+.. ....++ .-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 55799999999999887664321 235788888732 111111110 001222 2244
Q ss_pred cCCCCCCCCCCCccEEEecCcccccCCH---------------------------------------HHHHHHHHhccCC
Q 022929 164 GDAEDLPFPTDYADRYVSAGSIEYWPDP---------------------------------------QRGIREAYRVLKL 204 (290)
Q Consensus 164 ~d~~~l~~~~~~~D~i~~~~~l~~~~~~---------------------------------------~~~l~~~~~~L~p 204 (290)
+.+..--+|+++.|++++.+++||++.. ..+|+.=.+-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 5665545888999999999999998530 0345555577889
Q ss_pred CCEEEEEccCCCch--------h----HhhhhHHHh----------------hcCCCHHHHHHHHHHCC-CcEEEEEEcC
Q 022929 205 GGKACIIGPVYPTF--------W----LSRYFADVW----------------MLFPKEEEYIEWFQKAG-FKDVQLKRIG 255 (290)
Q Consensus 205 gG~l~i~~~~~~~~--------~----~~~~~~~~~----------------~~~~~~~~~~~ll~~aG-f~~v~~~~~~ 255 (290)
||.+++.....+.. . +...+.++. ..+++.+|+.+.+++.| |++.+.+.+.
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~ 255 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFE 255 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEe
Confidence 99999875443321 1 111111111 13468999999998877 6666666554
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00048 Score=60.02 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCEEEEEcCccchh-HHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----CCceEEEcCC----CC-CCCCCCCccEE
Q 022929 111 NMLVVDVGGGTGFT-TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDA----ED-LPFPTDYADRY 179 (290)
Q Consensus 111 ~~~vLDiG~G~G~~-~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~~~d~----~~-l~~~~~~~D~i 179 (290)
..++||||||...+ .+..++.+ +++++|+|+++..++.|+++... .+|+++...- .. +...++.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999998654 33334444 89999999999999999987443 3576654422 11 22234579999
Q ss_pred EecCcccc
Q 022929 180 VSAGSIEY 187 (290)
Q Consensus 180 ~~~~~l~~ 187 (290)
+|+--++.
T Consensus 182 mCNPPFy~ 189 (299)
T PF05971_consen 182 MCNPPFYS 189 (299)
T ss_dssp EE-----S
T ss_pred ecCCcccc
Confidence 99765553
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=58.19 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=69.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhh---hCCCCCceEEEcCC----CCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQ---KEPLKECKIVEGDA----EDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~---~~~~~~v~~~~~d~----~~l~~~~~~~D~i~~ 181 (290)
+.++|||+|.|.|.-+..+-..+|. ..++.++.|+..-+.... +...........|+ .++|.. +.|++++.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhhh
Confidence 5678999999999988888777776 457778888866555443 32222222333333 333432 23666665
Q ss_pred cCcccccCCH---HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 182 AGSIEYWPDP---QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 182 ~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
.+-+-+..+. ...++.+..++.|||.+++++...+.
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 4444333322 34888999999999999999887654
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0014 Score=50.47 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=67.3
Q ss_pred eEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC--CCCCCccEEEecCcccccCC--------HH---HHHHHH
Q 022929 136 NVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAGSIEYWPD--------PQ---RGIREA 198 (290)
Q Consensus 136 ~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~--~~~~~~D~i~~~~~l~~~~~--------~~---~~l~~~ 198 (290)
+|+|+|+.+++++..+++... .+++++..+-+.+. .+++++|+++.+. -++|. ++ ..++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999987432 36888887776553 3334699988653 34443 22 588899
Q ss_pred HhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 199 YRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 199 ~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.++|+|||.+.+...........+.- ...+|.+-|....|.+....-++.
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~--------av~~~~~~L~~~~~~V~~~~~~N~ 128 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESE--------AVEEFLASLDQKEFNVLKYQFINQ 128 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHH--------HHHHHHHTS-TTTEEEEEEEESS-
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHH--------HHHHHHHhCCcceEEEEEEEccCC
Confidence 99999999998875442221111110 134455555556788887777654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00033 Score=51.28 Aligned_cols=88 Identities=13% Similarity=0.193 Sum_probs=44.6
Q ss_pred CccEEEecCccccc--CC----HHHHHHHHHhccCCCCEEEEEccCCCchhHh-----hhhHHHhhcCCCHHHHHHHHHH
Q 022929 175 YADRYVSAGSIEYW--PD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLS-----RYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 175 ~~D~i~~~~~l~~~--~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
+||+|+|..+..|+ .. ...+++.+.+.|+|||.+++.-..+..+... ....+....-..++.+.++|.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 48999999887755 21 3479999999999999999985543322211 1111111222356678888887
Q ss_pred --CCCcEEEEEEcCccccccc
Q 022929 244 --AGFKDVQLKRIGPKWYRGV 262 (290)
Q Consensus 244 --aGf~~v~~~~~~~~~~~~~ 262 (290)
.||...+......+-..++
T Consensus 81 ~evGF~~~e~~~~~~~~~~gF 101 (110)
T PF06859_consen 81 PEVGFSSVEELGVPENSSKGF 101 (110)
T ss_dssp TTT---EEEEE----------
T ss_pred cccceEEEEEcccCCCCCCCC
Confidence 5999887655544333333
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0081 Score=53.36 Aligned_cols=95 Identities=19% Similarity=0.314 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC-CCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-AEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d-~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++++|+=+|+| .|.++..+++.. +.+|+++|.|++-.+.|++.... .++... .....--.+.||+|+..-.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd---~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGAD---HVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCc---EEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 378999999888 467888899976 59999999999999999977431 233322 1111111123999986543
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
...++...+.|+++|.+++....
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 34678899999999999998765
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0022 Score=54.29 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=55.8
Q ss_pred CCC--EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------------CCceEEEcCCCCC-CCCCC
Q 022929 110 RNM--LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------KECKIVEGDAEDL-PFPTD 174 (290)
Q Consensus 110 ~~~--~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~v~~~~~d~~~l-~~~~~ 174 (290)
++. +|||.-+|+|..+..++.. +++|+++|-++.+....+++... .+++++.+|..+. .-...
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 444 9999999999999999998 77899999999877776654221 3577777777432 21223
Q ss_pred CccEEEecCcccc
Q 022929 175 YADRYVSAGSIEY 187 (290)
Q Consensus 175 ~~D~i~~~~~l~~ 187 (290)
+||+|+..-.+.+
T Consensus 164 ~fDVVYlDPMfp~ 176 (250)
T PRK10742 164 RPQVVYLDPMFPH 176 (250)
T ss_pred CCcEEEECCCCCC
Confidence 6999998665554
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.022 Score=47.96 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=68.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCC---CCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFP---TDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~---~~~~D~i~~~~~ 184 (290)
.+++||-+|=+. ..++.++...+..+|+.+|+++..++..++.+.. -+++.+..|+.. |++ .++||++++.-.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeCCC
Confidence 689999999554 4444555444578999999999999888755432 238888999965 333 357999997421
Q ss_pred ccccCCHHHHHHHHHhccCCCC-EEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 185 IEYWPDPQRGIREAYRVLKLGG-KACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
- ......-++.+....||..| ..++.-...+.. . . ...++++.+.+.||.+.++..
T Consensus 122 y-T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s-~-----~------~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 122 Y-TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS-P-----D------KWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp S-SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---H-----H------HHHHHHHHHHTS--EEEEEEE
T ss_pred C-CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc-H-----H------HHHHHHHHHHHCCcCHHHHHh
Confidence 1 11223468889999998766 444432222110 0 0 123677888899997776643
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0023 Score=56.11 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=58.7
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCC-----C
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP-----F 171 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~-----~ 171 (290)
..+++.+.. .++..++|.--|.|..+..+++.+++.+++|+|.++++++.++++.. ..++.++..++.++. .
T Consensus 10 ~Evl~~L~~-~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 10 KEVLEALNP-KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHhhCc-CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 344444443 37889999999999999999999888999999999999999998865 457889999886653 2
Q ss_pred -CCCCccEEEe
Q 022929 172 -PTDYADRYVS 181 (290)
Q Consensus 172 -~~~~~D~i~~ 181 (290)
...++|.|+.
T Consensus 89 ~~~~~~dgiL~ 99 (310)
T PF01795_consen 89 NGINKVDGILF 99 (310)
T ss_dssp TTTS-EEEEEE
T ss_pred cCCCccCEEEE
Confidence 3346888887
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.005 Score=55.47 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=77.9
Q ss_pred CCCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC---CCCCCccEEE
Q 022929 108 SNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP---FPTDYADRYV 180 (290)
Q Consensus 108 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~---~~~~~~D~i~ 180 (290)
++++.+|||..+-.|.-+.+++....+ ..|++.|.+..-+...+.+.. -.+......|..++| ++. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 458999999999999888887776543 789999999988888877643 345666777776655 444 799998
Q ss_pred e----cC--ccc------ccCC----------HHHHHHHHHhccCCCCEEEEEccCC
Q 022929 181 S----AG--SIE------YWPD----------PQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 181 ~----~~--~l~------~~~~----------~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
. +. ++. .... .+++|..+..++++||+|+.+++..
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 5 22 211 1111 1268888999999999999987654
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0042 Score=52.66 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=69.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---------CceEEEcCCCC---CCCCCCC-c
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------ECKIVEGDAED---LPFPTDY-A 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------~v~~~~~d~~~---l~~~~~~-~ 176 (290)
...+|||+|+|+|..++.++... ..+|+..|+. ..+...+.+...+ .+.....+-.. ..+-... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 45689999999998777777753 7899999984 4333333321111 12222222211 1122223 8
Q ss_pred cEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
|+|++..++.....++.+...+...|..++.+++..+...
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999999888889999999999999997777655443
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=50.81 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC--CCC------CCCCCCccEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA--EDL------PFPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~--~~l------~~~~~~~D~i 179 (290)
+++.+||-+|+|+ |..+...++..+..+|+.+|+++.-++.|++ +....+....... .++ -+....+|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 3789999999997 8888899999988999999999999999998 4322222211111 110 1233458888
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
+....++ ..++.....++.||.+++......
T Consensus 247 ~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence 8665543 567788899999999888765443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.033 Score=52.51 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=71.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-----------CC------
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-----------LP------ 170 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-----------l~------ 170 (290)
.++++|+=+|||. |..+...++.. +..|+++|.+++.++.+++.. .++...|..+ ..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslG----A~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMG----AEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC----CeEEEeccccccccccchhhhcchhHHHH
Confidence 3789999999996 88888888887 568999999999999998742 2332222111 00
Q ss_pred ----CCC--CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 171 ----FPT--DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 171 ----~~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+.+ +.+|+|+.......-+.+..+.++..+.+||||.++....
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3599999776554434454556999999999999887654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.004 Score=57.43 Aligned_cols=118 Identities=18% Similarity=0.129 Sum_probs=79.1
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCH----HHHHHHhhhCCCCCceEEEcCC-CCCCCCCCCccEEEecCcc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP----HQLAKAKQKEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~----~~~~~a~~~~~~~~v~~~~~d~-~~l~~~~~~~D~i~~~~~l 185 (290)
--.|+|..+|.|.++..|.+. | |+.....+ ..+...-++ +.-=...|. +.++.-...||+|.+..++
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydR----GLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDR----GLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhc----ccchhccchhhccCCCCcchhheehhhhh
Confidence 357999999999999999776 2 33333322 233333322 111123344 4455445679999999888
Q ss_pred cccCCH---HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 186 EYWPDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 186 ~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
....+. ..++-++-|+|+|+|.+++-+... ...+++.++....++..-...
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------------vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------------VLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------HHHHHHHHHHhCcceEEEEec
Confidence 877553 579999999999999999876422 256788888888887554443
|
; GO: 0008168 methyltransferase activity |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.16 Score=44.23 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=77.6
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC--CCCccEEEecCcccc---
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP--TDYADRYVSAGSIEY--- 187 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~--~~~~D~i~~~~~l~~--- 187 (290)
+++|+-||.|.+...+.+. +...++++|+++.+++..+.|... ..+..|+.++... ...+|+++...--..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~---~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ 77 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN---KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSI 77 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC---CCccCccccCchhhcCCCCCEEEeCCCChhhhH
Confidence 6899999999998888776 234578899999999999988642 2567777665422 245999987432111
Q ss_pred ------cCCHH-HHHHHHH---hccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 188 ------WPDPQ-RGIREAY---RVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 188 ------~~~~~-~~l~~~~---~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..+.. .++.++. +.++|. +++.+....-.... .-.....+.+.|++.||.+ ....+..
T Consensus 78 ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~--------~~~~~~~i~~~l~~~GY~~-~~~~l~a 145 (275)
T cd00315 78 AGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHD--------NGNTLKVILNTLEELGYNV-YWKLLNA 145 (275)
T ss_pred HhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccC--------chHHHHHHHHHHHhCCcEE-EEEEEEH
Confidence 12222 2333333 333444 44444433221100 0013567888999999974 4444443
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.024 Score=51.12 Aligned_cols=101 Identities=25% Similarity=0.333 Sum_probs=71.0
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC-C-CCC-CCC-CCCccEEEecCc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-A-EDL-PFP-TDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d-~-~~l-~~~-~~~~D~i~~~~~ 184 (290)
++.+|+=+|||+ |.++..+++..+..+|+.+|.+++-++.|++......+.....+ . ... ... ...+|+++-...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 445999999997 88989999998889999999999999999985432211111111 0 000 111 225999986544
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
....++.+.++++|+|.+.+......
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 23478899999999999998765543
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.021 Score=51.24 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=63.6
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC-ceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++++||=+|||. |..+..+++..+..+++++|.+++.++.+++... .. +.....++.+.....+.+|+|+-...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa-~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA-DKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC-cEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 678999999884 7788888888644479999999999999886432 11 11011112111111234898875422
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...++.+.+.|++||.+++...
T Consensus 245 --~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467788899999999998764
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.099 Score=41.85 Aligned_cols=131 Identities=19% Similarity=0.097 Sum_probs=83.5
Q ss_pred EcCccchhHHHHHhhCC-CCeEEEEeCC--HHHHHHHh---hh---CCCCCceE-EEcCCCCCC----CCCCCccEEEec
Q 022929 117 VGGGTGFTTLGIVKHVD-AKNVTILDQS--PHQLAKAK---QK---EPLKECKI-VEGDAEDLP----FPTDYADRYVSA 182 (290)
Q Consensus 117 iG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~~a~---~~---~~~~~v~~-~~~d~~~l~----~~~~~~D~i~~~ 182 (290)
||=|.=.++..|++..+ ...+++.-++ ++..+.-. ++ +...++.+ ...|+.++. .....||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 56677778888888876 5667665443 33332222 11 12233333 344665553 355789999976
Q ss_pred Ccccc--cCC-----------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 183 GSIEY--WPD-----------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 183 ~~l~~--~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
+-..- ..+ ...+++.+..+|+++|.+.+.-..... ++...+.++.+++||.++
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------y~~W~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------YDSWNIEELAAEAGLVLV 148 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------CccccHHHHHHhcCCEEE
Confidence 43322 001 126888999999999999887544332 245677899999999999
Q ss_pred EEEEcCcccccc
Q 022929 250 QLKRIGPKWYRG 261 (290)
Q Consensus 250 ~~~~~~~~~~~~ 261 (290)
+...+....|++
T Consensus 149 ~~~~F~~~~ypg 160 (166)
T PF10354_consen 149 RKVPFDPSDYPG 160 (166)
T ss_pred EEecCCHHHCCC
Confidence 998887766643
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.083 Score=45.55 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=86.1
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC------CCCceEEEcCCCC-C-------CCCCCCcc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAED-L-------PFPTDYAD 177 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~-l-------~~~~~~~D 177 (290)
..|+.+|||--.-...+... ++..++=+|. +++++.-++... ..+..++..|+.+ + .+..+..-
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 46999999975555444222 2456666776 555554443332 3467788888852 1 12223355
Q ss_pred EEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCC-CchhH----hhh---h----HHHhhcCCCHHHHHHHHHH
Q 022929 178 RYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVY-PTFWL----SRY---F----ADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 178 ~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~-~~~~~----~~~---~----~~~~~~~~~~~~~~~ll~~ 243 (290)
++++-.++.|++.. .++++.+.+...||+.+++..... ..... ... . ...+...++.+++.++|++
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAE 240 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHH
Confidence 88889999999765 479999999888999988764332 11000 000 0 0111223578999999999
Q ss_pred CCCcEEEE
Q 022929 244 AGFKDVQL 251 (290)
Q Consensus 244 aGf~~v~~ 251 (290)
.||++.+.
T Consensus 241 ~Gw~~~~~ 248 (260)
T TIGR00027 241 RGWRASEH 248 (260)
T ss_pred CCCeeecC
Confidence 99987765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.013 Score=51.35 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=51.3
Q ss_pred CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC
Q 022929 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
|.+....+.+.++.... .+++.|||.-||+|..+....+. +.+++|+|++++..+.|+++..
T Consensus 190 Pt~kP~~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 190 PTQKPEALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred cccChHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 34455677777776654 48999999999999999888887 8899999999999999998853
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.012 Score=49.10 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=44.7
Q ss_pred CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh
Q 022929 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (290)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 152 (290)
+......+.+.++.... .+++.|||.-||+|..+..+.+. +.+++|+|++++..+.|++
T Consensus 173 ~~~kP~~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhhh--ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 44555677777776654 47999999999999999998888 7899999999999998874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.034 Score=50.79 Aligned_cols=102 Identities=24% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-----C-C-CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-----L-P-FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-----l-~-~~~~~~D~i~ 180 (290)
.++.+||.+|||. |..+..+++..+..+++++|.+++..+.+++... ..++...-.+ + . .....+|+|+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG---AETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---cEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 3788999999998 8899999998744469999999999999887532 1222211110 0 1 1223599988
Q ss_pred ecCc---------------ccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGS---------------IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~---------------l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-.-. ++...+....++++.+.++++|.+++...
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 6431 11223445688999999999999988754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.048 Score=53.54 Aligned_cols=127 Identities=22% Similarity=0.251 Sum_probs=80.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-------C-----CCeEEEEeCC---HHHHHHHhhhC--------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-------D-----AKNVTILDQS---PHQLAKAKQKE-------------------- 154 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-------~-----~~~v~~vD~s---~~~~~~a~~~~-------------------- 154 (290)
+.-+|+|+|=|+|.......+.+ + ..+++.+|.. .+.+..+.+..
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45789999999998666555433 2 3588999953 33333332110
Q ss_pred ------CCC--CceEEEcCCCC-CCCCCCCccEEEecCcccccCCH----HHHHHHHHhccCCCCEEEEEccCCCchhHh
Q 022929 155 ------PLK--ECKIVEGDAED-LPFPTDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLS 221 (290)
Q Consensus 155 ------~~~--~v~~~~~d~~~-l~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 221 (290)
... .+++..+|+.+ ++-....+|+++.... .--.+| +.+++.+.++++|||.+.--+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF-APAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC-CCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 011 23456677643 2212245999986432 222233 479999999999999986422
Q ss_pred hhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 222 RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
+...++.-|.++||++.+..-.+.+
T Consensus 207 -----------~a~~vr~~l~~~GF~v~~~~~~g~k 231 (662)
T PRK01747 207 -----------SAGFVRRGLQEAGFTVRKVKGFGRK 231 (662)
T ss_pred -----------hHHHHHHHHHHcCCeeeecCCCchh
Confidence 4567889999999988776655543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.029 Score=46.95 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=74.8
Q ss_pred cHHHHHhhcc---ccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCH----HHHHHHhhhCCCCCceEEEcC
Q 022929 94 TEDMRDDALE---PADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSP----HQLAKAKQKEPLKECKIVEGD 165 (290)
Q Consensus 94 ~~~~~~~~l~---~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~----~~~~~a~~~~~~~~v~~~~~d 165 (290)
...++..++- .+.. +++.+||-+|+++|....++.... |...|++++.|. +.+..|+++ .|+--+..|
T Consensus 138 rSKLAA~I~gGvdnihi-kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiED 213 (317)
T KOG1596|consen 138 RSKLAAGILGGVDNIHI-KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIED 213 (317)
T ss_pred HHHHHHHhhcCccceee-cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeecc
Confidence 4445555543 3333 589999999999999988888775 457899999986 566666653 466677778
Q ss_pred CCCCC---CCCCCccEEEecCcccccCCHH---HHHHHHHhccCCCCEEEEEc
Q 022929 166 AEDLP---FPTDYADRYVSAGSIEYWPDPQ---RGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 166 ~~~l~---~~~~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~l~i~~ 212 (290)
+.... +.-.-.|+|++. ++.++ -+.-++...||+||.+++.-
T Consensus 214 ArhP~KYRmlVgmVDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 214 ARHPAKYRMLVGMVDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred CCCchheeeeeeeEEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 75521 112236777653 22332 35568889999999998863
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.069 Score=41.34 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=77.1
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAE 167 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~ 167 (290)
+-+.+..+.+++.+.. ++..+.+|+|+|.|.+....++.. -...+|+++++-.+..++-+. -...+.|..-|+-
T Consensus 55 pAtteQv~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdlw 132 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLW 132 (199)
T ss_pred CccHHHHHHHHHHccC-CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhh
Confidence 3455566667776654 366789999999999988888872 478899999998777766431 1245678888887
Q ss_pred CCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 168 DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 168 ~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
+..+.+-++-+|+ .+-.-+++ +-.++..-+..|..++-.-+..+.
T Consensus 133 K~dl~dy~~vviF--gaes~m~d---Le~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 133 KVDLRDYRNVVIF--GAESVMPD---LEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred hccccccceEEEe--ehHHHHhh---hHHHHHhhCcCCCeEEEEecCCCc
Confidence 7666553333333 33222233 334555566777777666544444
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.027 Score=48.65 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=77.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------CCCCceEEEcCCCCC--CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDL--PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~v~~~~~d~~~l--~~~~~~~D~i~ 180 (290)
..+++|-||.|.|.......++-.-..+..+|+++..++..++.. ..+++.+..+|-..+ ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 678999999999999999888844578999999999998888753 235688888887433 24467799998
Q ss_pred ecCcccccCC----HHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....=--.+. .+.++..+.+.||++|+++....
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 6432111111 13578888999999999988763
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.05 Score=41.03 Aligned_cols=71 Identities=13% Similarity=-0.025 Sum_probs=49.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
.+++|+|||++-|.-++.++-+ +...|++++.++...+..+++....++-=......+.+-.-+.||+.++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 6899999999999999988877 3678999999999999998875433211001111123323345887765
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.018 Score=47.78 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=65.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhC----C--C---CeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV----D--A---KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FP 172 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~----~--~---~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~ 172 (290)
.-.+++|+.+-.|.++..+.+++ + + ..+++||+.+ | +.-.++.-+++|+.... |.
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M-------aPI~GV~qlq~DIT~~stae~Ii~hfg 112 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M-------APIEGVIQLQGDITSASTAEAIIEHFG 112 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C-------CccCceEEeecccCCHhHHHHHHHHhC
Confidence 34789999999999998887653 1 1 2399999832 2 23456778889987643 66
Q ss_pred CCCccEEEecCc-----ccccCCHH------HHHHHHHhccCCCCEEEEE
Q 022929 173 TDYADRYVSAGS-----IEYWPDPQ------RGIREAYRVLKLGGKACII 211 (290)
Q Consensus 173 ~~~~D~i~~~~~-----l~~~~~~~------~~l~~~~~~L~pgG~l~i~ 211 (290)
..+.|+|+|... +|.+..+- ..|+-...+|+|||.++--
T Consensus 113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 678999999543 44443331 4556667899999998754
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.029 Score=47.20 Aligned_cols=74 Identities=24% Similarity=0.250 Sum_probs=44.0
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh-------hCCC-----CCceEEEcCCCC-CCCCCCCccE
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------KEPL-----KECKIVEGDAED-LPFPTDYADR 178 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-------~~~~-----~~v~~~~~d~~~-l~~~~~~~D~ 178 (290)
.+|||.-+|-|..+..++.. |.+|+++|-|+-+....++ .... .+++++.+|..+ +..++.+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 49999999999999999876 7899999999865444332 1111 358899999865 4455678999
Q ss_pred EEecCcccc
Q 022929 179 YVSAGSIEY 187 (290)
Q Consensus 179 i~~~~~l~~ 187 (290)
|+..-++.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 998766654
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.027 Score=46.45 Aligned_cols=103 Identities=14% Similarity=0.058 Sum_probs=62.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC--CeEEEEeCCHHHHHHHhhhCCC-------------------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL------------------------------- 156 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~------------------------------- 156 (290)
.+.++.|-.||+|.++..+.-.++. ..+++.|+++++++.|++|+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 5679999999999988777655433 6899999999999999987311
Q ss_pred --------------CCceEEEcCCCCCC-----CCCCCccEEEec----CcccccCC-----HHHHHHHHHhccCCCCEE
Q 022929 157 --------------KECKIVEGDAEDLP-----FPTDYADRYVSA----GSIEYWPD-----PQRGIREAYRVLKLGGKA 208 (290)
Q Consensus 157 --------------~~v~~~~~d~~~l~-----~~~~~~D~i~~~----~~l~~~~~-----~~~~l~~~~~~L~pgG~l 208 (290)
......+.|+++.. ......|+|+.. ...+|..+ ...+++.+..+|.+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 11346777877621 112236888873 22333321 137999999999656666
Q ss_pred EEEc
Q 022929 209 CIIG 212 (290)
Q Consensus 209 ~i~~ 212 (290)
.+++
T Consensus 211 ~v~~ 214 (246)
T PF11599_consen 211 AVSD 214 (246)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6643
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.031 Score=47.96 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=48.3
Q ss_pred CCEEEEEcCccchhHHHHHhhCC--------CCeEEEEeCCHHHHHHHhhhCCC---------CCceEEEcCCCCCCCCC
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPL---------KECKIVEGDAEDLPFPT 173 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~--------~~~v~~vD~s~~~~~~a~~~~~~---------~~v~~~~~d~~~l~~~~ 173 (290)
..+|+|+|+|+|.++..+++... ..+|+.+|+|+.+.+.-++++.. .++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 47999999999999988876543 35899999999988888877653 12333 33444433
Q ss_pred CCccEEEecCcccccC
Q 022929 174 DYADRYVSAGSIEYWP 189 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~ 189 (290)
..-+|+++.++..+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 245667777666665
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.047 Score=46.06 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC
Q 022929 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (290)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~ 154 (290)
|.+....+.+.++.... .+++.|||.-||+|..+....+. +.+++|+|++++..+.+.++.
T Consensus 145 p~~kP~~l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 145 PTEKPVTSLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCCcHHHHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHH
Confidence 44555667777665443 37899999999999999888877 789999999999999998764
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.046 Score=50.79 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=79.4
Q ss_pred cHHHHHhhccccCCCCC--CCEEEEEcCccchhHHHHHhh----CCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEc
Q 022929 94 TEDMRDDALEPADLSNR--NMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEG 164 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~ 164 (290)
.+.+...+++......+ ...|+-+|+|-|-+.....+. ....++++++-+|.++...+..-- ..+++++..
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~ 428 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISS 428 (649)
T ss_pred HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEec
Confidence 34444455555443322 456788899999876554432 124789999999998877765311 356999999
Q ss_pred CCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEE
Q 022929 165 DAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 165 d~~~l~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i 210 (290)
|+.+++-+..+.|++++-..-..-.+. .+.|..+.+.|||+|.-+=
T Consensus 429 DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 429 DMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred cccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 999988555789999975433322222 3688999999999987654
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.048 Score=48.57 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=76.0
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCC-CCCCCccEEEecCccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLP-FPTDYADRYVSAGSIE 186 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~-~~~~~~D~i~~~~~l~ 186 (290)
..+|+|-=+|+|.=++..+...+..+++.-|+|+++.+.+++|...+ +...+..|...+- -....||+|= +.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----iD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----ID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----cC
Confidence 68899999999999999999877679999999999999999997655 4555556654321 1124588774 33
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....|-.++..+.+.++.||.|.+.-.
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 444566789999999999999998643
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.88 Score=43.03 Aligned_cols=138 Identities=16% Similarity=0.068 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC----CCeEEEEeCCHHHHHHHhhhCCCCCc----eEEEcCCCCCC-C----CCCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPLKEC----KIVEGDAEDLP-F----PTDY 175 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~v----~~~~~d~~~l~-~----~~~~ 175 (290)
.+..+|.|..||+|.+.....+.+. ...++|.|+++.....|+-+.-..++ ....+|...-| . ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 3667999999999998887776653 26799999999999999987543333 33444443223 2 3356
Q ss_pred ccEEEecCccc---ccC---------------------CH-HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhc
Q 022929 176 ADRYVSAGSIE---YWP---------------------DP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML 230 (290)
Q Consensus 176 ~D~i~~~~~l~---~~~---------------------~~-~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 230 (290)
||.|+++--.. +.. .. ...++.+...|+|||+..++-+..-.+.-.
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~--------- 335 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGG--------- 335 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCC---------
Confidence 99988842211 110 01 368899999999998766654433211000
Q ss_pred CCCHHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 231 FPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 231 ~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
....++..+-+ ...+..+..++...
T Consensus 336 --~e~~IR~~l~~-~~~~~~ii~lp~~l 360 (489)
T COG0286 336 --AEKDIRKDLLE-DNLLEAIIGLPTGL 360 (489)
T ss_pred --chHHHHHHHHh-ccceEEeeeCChhh
Confidence 23455555555 43344555555543
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.02 Score=49.21 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh-h------CC---CCC---ceEEEcCCCCCC--CCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-K------EP---LKE---CKIVEGDAEDLP--FPT 173 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~------~~---~~~---v~~~~~d~~~l~--~~~ 173 (290)
..+++|||+|||+|...+...... ...+...|.|.+.++.-.- + .. ... ......++.+.. ...
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 478999999999999988887772 3788899998887732221 0 00 000 111222111111 111
Q ss_pred -CCccEEEecCcccccCCHHHH-HHHHHhccCCCCEEEEE
Q 022929 174 -DYADRYVSAGSIEYWPDPQRG-IREAYRVLKLGGKACII 211 (290)
Q Consensus 174 -~~~D~i~~~~~l~~~~~~~~~-l~~~~~~L~pgG~l~i~ 211 (290)
-+||+|.++..+...+..+.+ ......+++++|.+++.
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 269999988888777666655 66667778889988775
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.7 Score=41.39 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC----CCeEEEEeCCHHHHHHHhh---hCCCCCceEEEcCCCCCC---------CC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQ---KEPLKECKIVEGDAEDLP---------FP 172 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~---~~~~~~v~~~~~d~~~l~---------~~ 172 (290)
+++.+|||..+-.|.-+..+.+..- ...+++-|.+..-+..... +....+......|+...| ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 4899999999999998877766631 2378999998865555443 333333333444443222 12
Q ss_pred CCCccEEEec------CcccccCC----------------H-HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 173 TDYADRYVSA------GSIEYWPD----------------P-QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 173 ~~~~D~i~~~------~~l~~~~~----------------~-~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
...||-|++. ..+.+.++ . -.++.+..++||+||.++.+++...+
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 2358988871 11111111 1 15888999999999999999876654
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.017 Score=42.20 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~ 142 (290)
+....+|||||+|.+.--|... +..-+|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 5678999999999998777776 778889997
|
; GO: 0008168 methyltransferase activity |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.14 Score=48.36 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=67.4
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC--------------------
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-------------------- 168 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-------------------- 168 (290)
++.+|+=+|+|. |..+..+++.. +..|+++|.+++.++.+++. +.+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----GAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCeEEeccccccccccccceeecCHHHHHHH
Confidence 678999999996 67777777776 57899999999988888863 22333323211
Q ss_pred ---CCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEE
Q 022929 169 ---LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 169 ---l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
++-.-..+|+|+..-.+..-+.|.-+.++..+.+|||+.++=
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 010024599998776555555555678889999999998764
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.2 Score=42.30 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=48.8
Q ss_pred eEEEcCCCCC--CCCCCCccEEEec--Ccc--cc-----c--CC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhh
Q 022929 160 KIVEGDAEDL--PFPTDYADRYVSA--GSI--EY-----W--PD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (290)
Q Consensus 160 ~~~~~d~~~l--~~~~~~~D~i~~~--~~l--~~-----~--~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 222 (290)
+++++|..++ .++++++|+|+.. +.+ .. + .+ ....++++.++|||||.+++.....
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------- 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------- 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-------
Confidence 4566666443 4667778888764 110 00 0 01 1368899999999999887632111
Q ss_pred hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 223 YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
....+...++++||.+.+..-+.
T Consensus 76 ----------~~~~~~~al~~~GF~l~~~IiW~ 98 (227)
T PRK13699 76 ----------RVDRFMAAWKNAGFSVVGHLVFT 98 (227)
T ss_pred ----------cHHHHHHHHHHCCCEEeeEEEEE
Confidence 12456678889999877765553
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.06 Score=47.07 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=68.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--------------------CCCeEEEEeCCH--HHHHHHhhhCC------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--------------------DAKNVTILDQSP--HQLAKAKQKEP------------ 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--------------------~~~~v~~vD~s~--~~~~~a~~~~~------------ 155 (290)
+..+||-||.|.|.=...++..+ +...++.||+.+ ..+........
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987666555443 125899999964 34443332211
Q ss_pred --------CCCceEEEcCCCCCCCCC-------CCccEEEecCccccc-----CCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 156 --------LKECKIVEGDAEDLPFPT-------DYADRYVSAGSIEYW-----PDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 156 --------~~~v~~~~~d~~~l~~~~-------~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.-++.|.+.|+..+..++ ...|+|...+.+.-+ +.-.++|.++...++||..|+|++-.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 113788999987654221 246777665554422 23347999999999999999998643
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.048 Score=42.87 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=72.8
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHH-hhhCCCCCceEEEcCCC-CCCCCCCCccEEEecCccccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-KQKEPLKECKIVEGDAE-DLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a-~~~~~~~~v~~~~~d~~-~l~~~~~~~D~i~~~~~l~~~ 188 (290)
+++.+-+|+.. -+...++-.++..++..+|.++--++.- +.+. ..+...|+. +...-.++||.+.|.++++|.
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~----ssi~p~df~~~~~~y~~~fD~~as~~siEh~ 76 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL----SSILPVDFAKNWQKYAGSFDFAASFSSIEHF 76 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCccccccc----ccccHHHHHHHHHHhhccchhhheechhccc
Confidence 46677777764 2333334444567788888754221111 1110 011111211 011123469999999999877
Q ss_pred C-----C---H---HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 189 P-----D---P---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 189 ~-----~---~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
. | + .+.+.++.++|||||.|++..|..... ...+.+ +.+....+.-++ .||+.+.....
T Consensus 77 GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~----i~fNah-RiYg~~rL~mm~--~gfe~i~tfs~ 146 (177)
T PF03269_consen 77 GLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA----IQFNAH-RIYGPIRLAMMF--YGFEWIDTFSG 146 (177)
T ss_pred cccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc----eEEecc-eeecHhHHHHHh--CCcEEEeeecc
Confidence 2 2 1 367889999999999999988765421 111111 123444454444 49998887554
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.3 Score=43.87 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=61.4
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeC---CHHHHHHHhhhCCCCCceEEE---cCCCCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQ---SPHQLAKAKQKEPLKECKIVE---GDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~---s~~~~~~a~~~~~~~~v~~~~---~d~~~l~~~~~~~D~i~~~ 182 (290)
++.+||-+|+|. |.++..+++.. +.++++++. +++-.+.+++... +++. .+..+.. ..+.+|+|+-.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga----~~v~~~~~~~~~~~-~~~~~d~vid~ 245 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGA----TYVNSSKTPVAEVK-LVGEFDLIIEA 245 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCC----EEecCCccchhhhh-hcCCCCEEEEC
Confidence 678999999985 77888888876 568999986 6777777775422 2221 1111101 12358988854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.. . ...+....+.|+++|.+++....
T Consensus 246 ~g-----~-~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 246 TG-----V-PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred cC-----C-HHHHHHHHHHccCCcEEEEEecC
Confidence 32 1 23678888999999999876543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.26 Score=39.98 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=85.1
Q ss_pred CCCEEEEEcCccchhHHHHHhh---C-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-------CCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH---V-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~---~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-------~~~~~~D~ 178 (290)
.+..|+|+|.-.|.-++..+.. . ...+|+++|++-..++.+... .+++.|+.++-.+.. ..++.--+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--VPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--CCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 5688999999998877666543 1 237999999976554443322 358999999887642 22333345
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
.+|-.+-|+..+--+.++-+..+|..|-++++.+......+-........ --..+.+...+++.+
T Consensus 147 fvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g--~gP~~AVe~ylr~~p 211 (237)
T COG3510 147 FVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFG--GGPYEAVEAYLREFP 211 (237)
T ss_pred EEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcC--CChHHHHHHHHHhCC
Confidence 56667777766667788888999999999999876654432111110000 012456667777665
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.12 Score=46.17 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=36.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhC----C----CCeEEEEeCCHHHHHHHhhhCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV----D----AKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~----~----~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
....++|||.|.|.++..+++.. | ..++..|++|++..+.=++++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 35689999999999988776543 2 5899999999998887776543
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.11 Score=47.30 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=70.1
Q ss_pred CCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCC-----CceEEEcCCCCCC-CCCCCccEEEecC
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLK-----ECKIVEGDAEDLP-FPTDYADRYVSAG 183 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~~d~~~l~-~~~~~~D~i~~~~ 183 (290)
+.+|||.=+|+|.=++..+...+ ..+|+.-|+|+++++.+++|...+ .++....|+..+= .....||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-- 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-- 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe--
Confidence 46899999999999998888854 478999999999999999884322 3566777774431 24556999863
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.....+-.++..+.+.++.||.|++...
T Consensus 128 --DPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 --DPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred --CCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 3445567899999999999999999754
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.36 Score=43.22 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
+++++||=+|||. |.++..+++. .++.+++++|.+++-++.+++ ... .....+. . ....+|+|+-.-.-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---~~~~~~~---~-~~~g~d~viD~~G~- 232 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---TYLIDDI---P-EDLAVDHAFECVGG- 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---eeehhhh---h-hccCCcEEEECCCC-
Confidence 3789999999885 6666666664 455789999999988888875 221 1111111 1 11148988843221
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+.....++...++|+++|.+++...
T Consensus 233 --~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 --RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --CccHHHHHHHHHhCcCCcEEEEEee
Confidence 0123467888999999999988654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.95 Score=39.96 Aligned_cols=94 Identities=21% Similarity=0.235 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~ 181 (290)
.++.+||..|+|. |..+..+++.. +.++++++.+++..+.+++.. +..+..+-... ....+.+|+++.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG----ADEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC----CCEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 4678899888874 78888888886 678999999999888886532 12222111110 123446898885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.... ...++++.+.|+++|.++....
T Consensus 239 ~~g~------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 239 FVGT------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCCC------HHHHHHHHHHhhcCCEEEEECC
Confidence 4221 3477889999999999987653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.23 Score=37.63 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=49.1
Q ss_pred ceEEEcCCCC-CCCCCCCccEEEecCcccccCCH----HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCC
Q 022929 159 CKIVEGDAED-LPFPTDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233 (290)
Q Consensus 159 v~~~~~d~~~-l~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (290)
+++..+|+.+ ++--...+|+|+... +..-.++ ..+++.+.++++|||.+..-+ .
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------~ 91 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------S 91 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------c
Confidence 4455666632 221124588888653 2222333 479999999999999885422 3
Q ss_pred HHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 234 EEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 234 ~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
...++..|.++||.+.+..-.+.+.
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred hHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 4568899999999988887776654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.61 Score=41.10 Aligned_cols=88 Identities=23% Similarity=0.260 Sum_probs=59.1
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++.+||=+|||. |.++..+++..+...+.++|.+++.++.+.+.. .+ |..+. ....+|+|+-...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------~i--~~~~~--~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------VL--DPEKD--PRRDYRAIYDASG---- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------cc--Chhhc--cCCCCCEEEECCC----
Confidence 567888889885 788888888875445778899888777665321 11 11110 1235898885422
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...++.+.+.|+++|.+++...
T Consensus 210 -~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 -D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 2467888899999999998654
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.084 Score=48.75 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=76.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCCCCC----ceEEEcCCCCC----CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDAEDL----PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----v~~~~~d~~~l----~~~~~~~D~i~ 180 (290)
++.+|||.=|++|.-++..++..++ .++++.|.++.++...+++...+. ++....|+..+ +.....||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 5679999999999999999999876 689999999999999998866543 33344555321 23346799886
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
. .....+..+|..+.+.++.||.|++....
T Consensus 189 L----DPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 189 L----DPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred c----CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 3 33344567999999999999999997553
|
|
| >COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.47 Score=41.74 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=51.5
Q ss_pred CCCCEEEEEccCCCchhHhhhhH----HH----hh-----cCCCHHHHHHHHHHCCCcEEEEEEcCccccccccccccee
Q 022929 203 KLGGKACIIGPVYPTFWLSRYFA----DV----WM-----LFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIM 269 (290)
Q Consensus 203 ~pgG~l~i~~~~~~~~~~~~~~~----~~----~~-----~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~ 269 (290)
+|||.-.++++.....-..-+.. +. .. .--+.+.|..+++++|-+.+++-.........-..+..+.
T Consensus 151 ~pgg~TaVs~cGANPGmvswFVKqaLvdlAad~~ld~~ep~~ddr~gwAkLmkK~GVkgiHiaeRdTqra~~Pkp~n~fw 230 (481)
T COG5310 151 NPGGPTAVSTCGANPGMVSWFVKQALVDLAADLGLDFEEPAQDDREGWAKLMKKAGVKGIHIAERDTQRAKKPKPFNGFW 230 (481)
T ss_pred CCCCCeeeeecCCCchHHHHHHHHHHHHHHHHhCcCccCCcchhhHHHHHHHHHcCCceEEEEeeccccCCCCCCCcccc
Confidence 68898888877655422221111 11 10 1125689999999999999998776543332223334444
Q ss_pred eeEEEEecCCCCCCCccccc
Q 022929 270 GCSVTGVKPASGDSPLQVTI 289 (290)
Q Consensus 270 ~~~~~a~k~~~~~~~~~~~~ 289 (290)
+.+.+.-..+.|.+|..+|+
T Consensus 231 ntWsveGfi~EG~qPaElgW 250 (481)
T COG5310 231 NTWSVEGFITEGLQPAELGW 250 (481)
T ss_pred cceeeeeeccCCCChhhhcc
Confidence 45555545567778877664
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.97 Score=40.22 Aligned_cols=91 Identities=16% Similarity=0.098 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+++.+||=.|+|. |..+..+++.. +.++++++.+++-.+.+++.... .+ .|..+. ..+.+|+++-....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~----~v-i~~~~~--~~~~~d~~i~~~~~-- 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAA----SA-GGAYDT--PPEPLDAAILFAPA-- 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCc----ee-cccccc--CcccceEEEECCCc--
Confidence 4789999999864 66677777776 56899999999988888875321 11 111111 12347876543221
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
...+....+.|++||.+++...
T Consensus 234 ----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ----HHHHHHHHHhhCCCcEEEEEec
Confidence 1367888899999999988664
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.74 Score=39.00 Aligned_cols=96 Identities=24% Similarity=0.341 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
.++.+||..|+|+ |..+..+++.. +.++++++.+++..+.+++... . .++...-... ....+.+|+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGA-D--HVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCC-c--eeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 3788999999996 77777777775 5899999999888887765421 1 1111110000 0123459999854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
..- ...+..+.+.|+++|.++.....
T Consensus 209 ~~~------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 209 VGG------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CCC------HHHHHHHHHhcccCCEEEEEccC
Confidence 221 14567788899999999876543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.8 Score=38.12 Aligned_cols=129 Identities=18% Similarity=0.204 Sum_probs=77.4
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecCccc---
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGSIE--- 186 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~~l~--- 186 (290)
+++|+-||-|.+...+.+.. ...+.++|+++.+.+.-+.|.. ....+|+.++. ++. .+|+++...--.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFS 75 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT----EEEESHGGGCHHHHHHH-T-SEEEEE---TTTS
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc----ccccccccccccccccc-cceEEEeccCCceEe
Confidence 68999999999999998872 3568889999999999998875 77888887764 443 499998732111
Q ss_pred ------ccCCHH-HHH---HHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 187 ------YWPDPQ-RGI---REAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 187 ------~~~~~~-~~l---~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
...+.. .++ -++.+.++|.- ++.+....-...... ...+.+.+.|++.|+.+ ....+..
T Consensus 76 ~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~--~~~ENV~~l~~~~~~--------~~~~~i~~~l~~lGY~v-~~~vlna 144 (335)
T PF00145_consen 76 IAGKRKGFDDPRNSLFFEFLRIVKELKPKY--FLLENVPGLLSSKNG--------EVFKEILEELEELGYNV-QWRVLNA 144 (335)
T ss_dssp TTSTHHCCCCHTTSHHHHHHHHHHHHS-SE--EEEEEEGGGGTGGGH--------HHHHHHHHHHHHTTEEE-EEEEEEG
T ss_pred ccccccccccccchhhHHHHHHHhhccceE--EEecccceeeccccc--------cccccccccccccceee-hhccccH
Confidence 112222 122 33344556743 333333221110000 12477889999999964 4555554
Q ss_pred cc
Q 022929 257 KW 258 (290)
Q Consensus 257 ~~ 258 (290)
..
T Consensus 145 ~~ 146 (335)
T PF00145_consen 145 AD 146 (335)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.19 Score=45.07 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=36.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 152 (290)
.-+.|+|+|.|.|.++..+.-.+ +..|.+||-|+...+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 56789999999999999998887 7899999999887777764
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.14 Score=45.32 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh-------hCC----C-CCceEEEcCCCCCCC-CCCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------KEP----L-KECKIVEGDAEDLPF-PTDY 175 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-------~~~----~-~~v~~~~~d~~~l~~-~~~~ 175 (290)
++|+.|.|--.|+|.++...+.- |+.|.|.||+-.++...+. |+. . .-+.++.+|....+. ....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred CCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 48999999999999999988887 8999999998877764322 111 1 125567778766542 2457
Q ss_pred ccEEEec------------------------CcccccCCH---------HHHHHHHHhccCCCCEEEEEcc
Q 022929 176 ADRYVSA------------------------GSIEYWPDP---------QRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 176 ~D~i~~~------------------------~~l~~~~~~---------~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
||.|+|. ....|.|.. ..++.-..+.|..||++++.-+
T Consensus 285 fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 9999991 112233221 2466677899999999988654
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.3 Score=40.94 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=65.1
Q ss_pred HHhhccccCCCCCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCc
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~ 176 (290)
.+.+++.....-++++|+=+|+|. |......++.. +.+|+.+|.++.-...|+.. +.+.. +..+ .. ..+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----G~~~~--~~~e-~v--~~a 258 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----GYEVM--TMEE-AV--KEG 258 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----CCEEc--cHHH-HH--cCC
Confidence 344444444434789999999997 66666666665 56899999999887777753 22221 1111 11 237
Q ss_pred cEEEecCcccccCCHHHHHH-HHHhccCCCCEEEEEccC
Q 022929 177 DRYVSAGSIEYWPDPQRGIR-EAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~i~~~~ 214 (290)
|+|+... ... ..+. ...+.+++||.++.....
T Consensus 259 DVVI~at-----G~~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 259 DIFVTTT-----GNK-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CEEEECC-----CCH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 9998642 222 3444 458899999999887643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.54 Score=35.38 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=60.7
Q ss_pred ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEecCcccccCCHHH
Q 022929 120 GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVSAGSIEYWPDPQR 193 (290)
Q Consensus 120 G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~~~~l~~~~~~~~ 193 (290)
|-|..+..+++..+ .+++++|.++.-++.+++... ..++..+-.++ ...+..+|+|+-.-. -..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------SHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcc---cccccccccccccccccccccccceEEEEecC------cHH
Confidence 45788889999885 999999999999999987531 12222222111 123346999985432 146
Q ss_pred HHHHHHhccCCCCEEEEEccCC
Q 022929 194 GIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 194 ~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.++....+|+++|.+++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8899999999999999987654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.84 Score=40.52 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=60.7
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcC---CCCCCCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGD---AEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d---~~~l~~~~~~~D~i~~~~~ 184 (290)
++.+||-.|||. |..+..+++.. +. ++++++.+++..+.+++.. .. .++..+ ..........+|+++....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g-~~--~vi~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMG-AD--ETVNLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcC-CC--EEEcCCchhhhhhhccCCCccEEEECCC
Confidence 678898888876 77777788876 55 7999999988888666532 11 122111 1111112234899986432
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
. ...++.+.+.|+++|.++...
T Consensus 241 ~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 A------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 235778889999999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.5 Score=39.13 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=79.9
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecCcccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGSIEY 187 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~~l~~ 187 (290)
..+++|+-||.|.+..-+.... -.-+.++|+++.+++.-+.+... ..+...|+..+. +....+|+++...--..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~--~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~ 79 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH--GDIILGDIKELDGEALRKSDVDVLIGGPPCQD 79 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC--CceeechHhhcChhhccccCCCEEEeCCCCcc
Confidence 4679999999999998887762 35677899999999999888753 455666765433 11115899987322221
Q ss_pred ---------cCCHH----HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 188 ---------WPDPQ----RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 188 ---------~~~~~----~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
..|+. --+.++...++| .+++.+....-... .-...+.+.+.|++.||.
T Consensus 80 FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~---------~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 80 FSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS---------KGQTFDEIKKELEELGYG 141 (328)
T ss_pred hhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc---------CchHHHHHHHHHHHcCCc
Confidence 22222 234456666777 55555544332111 122568999999999997
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.8 Score=38.46 Aligned_cols=127 Identities=16% Similarity=0.062 Sum_probs=75.0
Q ss_pred EEEEcCccchhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecCcccc----
Q 022929 114 VVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY---- 187 (290)
Q Consensus 114 vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~---- 187 (290)
|+|+-||.|.+..-+.+. +.+ +.++|+++.+.+.-+.|... .++.+|+.++... -..+|+++...--..
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~---~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~a 75 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN---KVPFGDITKISPSDIPDFDILLGGFPCQPFSIA 75 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC---CCCccChhhhhhhhCCCcCEEEecCCCcccchh
Confidence 589999999999988776 455 56799999999999888753 4456777665421 124899876321111
Q ss_pred -----cCCHH-HHHHHHHhc---cCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 188 -----WPDPQ-RGIREAYRV---LKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 188 -----~~~~~-~~l~~~~~~---L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..+.. .++.++.++ ++|. +++.+....-.... .-.....+.+.|++.||.+. ...+..
T Consensus 76 g~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~--------~~~~~~~i~~~l~~~GY~v~-~~~l~a 142 (315)
T TIGR00675 76 GKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHD--------KGRTFKVIIETLEELGYKVY-YKVLNA 142 (315)
T ss_pred cccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcc--------cchHHHHHHHHHHhCCCEEE-EEEEcH
Confidence 12222 334444444 4554 44444433211100 01134678888999999753 444443
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.3 Score=38.97 Aligned_cols=138 Identities=13% Similarity=0.178 Sum_probs=88.5
Q ss_pred CCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC------CCceEEEcCCCCCC----CC-----CC
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLP----FP-----TD 174 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~------~~v~~~~~d~~~l~----~~-----~~ 174 (290)
...|+-+|||--.-+-.+ ..| +.+|+=+|. |+.++.=++.+.. .+..++..|+.+.. +. ..
T Consensus 93 ~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDTRAYRL--DWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccccceeec--CCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 478999999864332222 222 467777887 7777665554332 25788999997422 22 33
Q ss_pred CccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHh-------hhh-------HHHhhcCCCHHHHH
Q 022929 175 YADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLS-------RYF-------ADVWMLFPKEEEYI 238 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~ 238 (290)
.--++++-.++.+++.. ++++..+...+.||..++............ ... ...+....+..++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 34478889999999865 479999999999999888765322111111 001 11222234689999
Q ss_pred HHHHHCCCcEEEE
Q 022929 239 EWFQKAGFKDVQL 251 (290)
Q Consensus 239 ~ll~~aGf~~v~~ 251 (290)
.++.+.||.....
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999986655
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.6 Score=37.00 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=66.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC----CeEEEEeCCHHHHHHHhhhC--CCCC--ceEEEcCCCC-CC-CCCCCcc-E
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA----KNVTILDQSPHQLAKAKQKE--PLKE--CKIVEGDAED-LP-FPTDYAD-R 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~----~~v~~vD~s~~~~~~a~~~~--~~~~--v~~~~~d~~~-l~-~~~~~~D-~ 178 (290)
.+...+|+|+|+..-+..+...+.. .+++.+|+|...+....+.. ..++ +.-+++|.+. +. .+..+-- .
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4688999999999877777665433 78999999998776544331 1233 3345666632 11 1122112 2
Q ss_pred EEecCcccccCCH--HHHHHHHHhccCCCCEEEEE
Q 022929 179 YVSAGSIEYWPDP--QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 179 i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 211 (290)
++....+..+... ..++.+++..|+||-++++.
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3345556665432 36999999999999999885
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.37 Score=42.19 Aligned_cols=99 Identities=22% Similarity=0.188 Sum_probs=73.3
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++.+|.-||.|. |..+..++-.. +..|+.+|+|.+-+......+. .+++.+..+...+.-.-.+.|+++..-.+--.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~-~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG-GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC-ceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 456788899985 77777777765 7899999999988887776654 34666666554443233458999976555555
Q ss_pred CCHHHHHHHHHhccCCCCEEEE
Q 022929 189 PDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i 210 (290)
..|.-+.+++...+|||+.++=
T Consensus 245 kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEE
Confidence 6677789999999999998863
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.66 Score=41.75 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~ 181 (290)
.++++||-.|+|. |..+..+++..+..+|+++|.+++-.+.+++... . .++...-.+. ......+|+|+-
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~i~~~~~~~g~d~vid 251 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA-T--HTVNSSGTDPVEAIRALTGGFGADVVID 251 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c--eEEcCCCcCHHHHHHHHhCCCCCCEEEE
Confidence 4789999999875 7777888887633369999999999988875422 1 1121111110 012235898884
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... . ...++...+.++++|.+++...
T Consensus 252 ~~g-----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 252 AVG-----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCC-----C-HHHHHHHHHHhccCCEEEEECC
Confidence 322 2 2356777889999999988754
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.38 Score=40.26 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=48.9
Q ss_pred CCCEEEEEcCccchhHHHH-HhhCCCCeEEEEeCCHHHHHHHhhhCCCC-----CceEEEc-CCCC----CCCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGI-VKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVEG-DAED----LPFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~~-d~~~----l~~~~~~~D~ 178 (290)
+..++||||.|.-.+--.+ ...+ +++.+|.|+++..++.|+.....+ .+++... |-.. +--..+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 5678999999975432111 1222 789999999999999998764322 2444322 2211 1112467999
Q ss_pred EEecCcccc
Q 022929 179 YVSAGSIEY 187 (290)
Q Consensus 179 i~~~~~l~~ 187 (290)
.+|+--+|.
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999877763
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.28 Score=44.84 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=48.3
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCC-CCCccEEEe
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP-TDYADRYVS 181 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~-~~~~D~i~~ 181 (290)
...|||||+|+|.++...+... +-.|++++.-..|.+.|++-... +++.++.....++... ..+.|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 3579999999999998888874 56799999999999999865332 3455555443333211 223566554
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.09 E-value=4.7 Score=35.44 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=86.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCC------------------------CCceEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPL------------------------KECKIVE 163 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~------------------------~~v~~~~ 163 (290)
....|+.+|||.-.+...+.... +...++=||.++.....+...-.. .+-..+.
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g 166 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIG 166 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeeec
Confidence 56889999999988887777765 457788888877666655211000 0112223
Q ss_pred cCCCCCC----------CCCCCccEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh---
Q 022929 164 GDAEDLP----------FPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW--- 228 (290)
Q Consensus 164 ~d~~~l~----------~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~--- 228 (290)
.|+.++. ....-.-++++-.++.+++..+ .+++.+.........+ .-++..+...+...+....
T Consensus 167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv-~YEQi~~~D~Fg~vM~~nlk~r 245 (335)
T KOG2918|consen 167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFV-NYEQINPNDRFGKVMLANLKRR 245 (335)
T ss_pred cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEE-EEeccCCCChHHHHHHHHHHhc
Confidence 3333211 1111233455566666665433 4666666666555544 4444444444444433222
Q ss_pred -------hcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 229 -------MLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 229 -------~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..|.|.++.++-+.++||+-+.+.++-.
T Consensus 246 ~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~e 280 (335)
T KOG2918|consen 246 GCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNE 280 (335)
T ss_pred CCCCchhhhcccHHHHHHHHHhcCCceeehhhHHH
Confidence 2357899999999999999888877653
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.71 Score=41.79 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
+++.+||=.|+|. |..+..+++..+..+|+++|.+++-++.+++... . .++..+-.++ ....+.+|+|+-.
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~--~~i~~~~~~~~~~i~~~~~~g~d~vid~ 266 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA-T--ATVNAGDPNAVEQVRELTGGGVDYAFEM 266 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC-c--eEeCCCchhHHHHHHHHhCCCCCEEEEC
Confidence 3778898899875 7777778887633379999999999998875422 1 1111111110 0112258988853
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.. . ...+....+.|+++|.+++...
T Consensus 267 ~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 267 AG-----S-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CC-----C-hHHHHHHHHHHhcCCEEEEEcc
Confidence 21 1 2466778889999999987654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.77 Score=39.78 Aligned_cols=94 Identities=22% Similarity=0.266 Sum_probs=61.2
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-CC----CCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DA----EDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d~----~~l~~~~~~~D~i~~~~ 183 (290)
++.+||=+|+|. |..+..+++..+..+++++|.+++-++.+++... . .++.. +. ..+ .....+|+++-..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~--~~i~~~~~~~~~~~~-~~~~g~d~vid~~ 195 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA-T--ALAEPEVLAERQGGL-QNGRGVDVALEFS 195 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-c--EecCchhhHHHHHHH-hCCCCCCEEEECC
Confidence 678999999875 7777778887633459999999988888876432 1 11110 10 001 1223489887532
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ....++.+.+.|+++|.+++...
T Consensus 196 G------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 196 G------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred C------ChHHHHHHHHHhcCCCEEEEecc
Confidence 1 12467788999999999988764
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.82 Score=40.64 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=60.4
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCC---CC-C-CCCCCccEEEec
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAE---DL-P-FPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~---~l-~-~~~~~~D~i~~~ 182 (290)
++.+||=+|+|. |..+..+++.. +.+ ++++|.+++-.+.+++... . .++...-. .+ . .....+|+|+-.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga-~--~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGA-D--FVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-C--EEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 688999998874 66777778776 455 9999999998888875432 1 11111100 00 0 122359998843
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.. ....+....+.|+++|.+++...
T Consensus 239 ~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 SG------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 22 12355677889999999987654
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=9.1 Score=36.00 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=43.0
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCC
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDL 169 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l 169 (290)
..+++|+-||.|.+...+... +...+.++|+++.+.+.-+.|... +....+..|+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhC
Confidence 569999999999999988766 345667899999998888887631 2334455666554
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.37 Score=43.40 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=80.0
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----------CCC--CCceE
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EPL--KECKI 161 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----------~~~--~~v~~ 161 (290)
..+.+..+.+.+... +++...|+|+|-|.....++.......-+|+++....-+.+..+ ++. ..++.
T Consensus 177 ~~~ql~si~dEl~~g-~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLG-PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hHHHHHHHHHHhccC-CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 344555667777765 88999999999999999888876556778888776444443322 222 23667
Q ss_pred EEcCCCCCC---CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 162 VEGDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 162 ~~~d~~~l~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
++++..+.. .-....++|+++++... ++...-++++..-+++|-+++-..+..+
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 777775422 12235889998887753 2223344588888899998876655544
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.87 Score=44.18 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=62.0
Q ss_pred CEEEEEcCccchhHHHHHhhCC----CCeEEEEeCCHHHHHHHhhhC----CC--------CCceEEEcCCCCCCCCC--
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE----PL--------KECKIVEGDAEDLPFPT-- 173 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~----~~--------~~v~~~~~d~~~l~~~~-- 173 (290)
..|+-+|+|-|-+.....+... ..++++||-++.+....+.+. .. ..|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4689999999987665544321 368999999966443333221 11 23899999998864321
Q ss_pred ---------CCccEEEecCcccccCCH--HHHHHHHHhccCC----CCE
Q 022929 174 ---------DYADRYVSAGSIEYWPDP--QRGIREAYRVLKL----GGK 207 (290)
Q Consensus 174 ---------~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p----gG~ 207 (290)
+++|+||+-..-.+-.+. .+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999985433322222 2677888888876 675
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=90.93 E-value=3.2 Score=30.45 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=60.5
Q ss_pred CccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCcccccCCHH
Q 022929 119 GGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSIEYWPDPQ 192 (290)
Q Consensus 119 ~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~l~~~~~~~ 192 (290)
||.|.++..+++.+ .+..++.+|.+++.++.+++.. +.++.+|..+.. ..-.++|.+++..- +..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----VEVIYGDATDPEVLERAGIEKADAVVILTD-----DDE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----SEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----cccccccchhhhHHhhcCccccCEEEEccC-----CHH
Confidence 34445555554432 2468999999999999888643 678999987642 22235787776432 332
Q ss_pred --HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 193 --RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 193 --~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
..+....+-+.|...++.... ..+..+.|+++|.+.+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~--------------------~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVN--------------------DPENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEES--------------------SHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC--------------------CHHHHHHHHHCCcCEE
Confidence 233345566667777766532 2344567777776543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.3 Score=40.85 Aligned_cols=106 Identities=16% Similarity=0.083 Sum_probs=67.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC--CCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcC-C---CCCCCCC-CCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPL--KECKIVEGD-A---EDLPFPT-DYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d-~---~~l~~~~-~~~D~i~ 180 (290)
..+.++|+|.|.|.-...+....+ ...++.||.|..|......+... ..-+.+... . ..+|... ..||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 457788998887655444444433 36799999999999888766443 111111111 1 1123333 3499999
Q ss_pred ecCcccccCCHH---HHH-HHHHhccCCCCEEEEEccCC
Q 022929 181 SAGSIEYWPDPQ---RGI-REAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 181 ~~~~l~~~~~~~---~~l-~~~~~~L~pgG~l~i~~~~~ 215 (290)
+.+.++++.+.. ... .-+....++|+.+++++...
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999999987653 233 34456678899999886643
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.66 E-value=1.3 Score=39.65 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=60.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC---C--CCCCCCcc-EEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED---L--PFPTDYAD-RYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~---l--~~~~~~~D-~i~~ 181 (290)
.++.+||=.|+|. |..+..+++..+...+++++.+++-.+.+++... . .++..+-.. + ......+| +|+-
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA-M--QTFNSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-c--eEecCcccCHHHHHHHhcCCCCCeEEEE
Confidence 3678999999875 7777778887643347899999998888765321 1 111111000 0 01223477 5542
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
. ... ...+....+.|++||.+++....
T Consensus 236 ~-----~G~-~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 236 T-----AGV-PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred C-----CCC-HHHHHHHHHHhhcCCEEEEEccC
Confidence 2 111 34678888999999999987543
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.51 Score=40.58 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=41.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-----CCCeEEEEeCCHHHHHHHhhh-CCC--CCceEEEcCCCCCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQK-EPL--KECKIVEGDAEDLP 170 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-----~~~~v~~vD~s~~~~~~a~~~-~~~--~~v~~~~~d~~~l~ 170 (290)
.++..++|+|||.|.++..++... +...++.||-...-...-.+. ... ..++-+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 477899999999999999999887 457899999854222111111 111 24556667776654
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.8 Score=39.29 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC-----CCC-C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-----AED-L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d-----~~~-l-~~~~~~~D~i~ 180 (290)
.++++||=+|+|. |..+..+++..+..+|+++|.+++-++.+++... . .++..+ ..+ + ....+.+|+|+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~--~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI-T--DFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC-c--EEEecccccchHHHHHHHHhCCCCCEEE
Confidence 4789999999885 7777788888643379999999999998876422 1 122111 100 0 01122589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...++.....+++| |.+++...
T Consensus 274 d~~G-----~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 274 ECAG-----N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred ECCC-----C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 5332 1 24667777888886 98877654
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=90.00 E-value=2.8 Score=38.25 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=59.1
Q ss_pred CCCEEEEEcCccch----hHHHHHhhC---CCCeEEEEeC----CHHHHHHHhhhCC----CCC--ceEEE---cCCCCC
Q 022929 110 RNMLVVDVGGGTGF----TTLGIVKHV---DAKNVTILDQ----SPHQLAKAKQKEP----LKE--CKIVE---GDAEDL 169 (290)
Q Consensus 110 ~~~~vLDiG~G~G~----~~~~l~~~~---~~~~v~~vD~----s~~~~~~a~~~~~----~~~--v~~~~---~d~~~l 169 (290)
+.-+|+|+|.|.|. +...++.+. |..++|+++. +...++.+.+++. .-+ .+|.. .+.+++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 56799999999996 444444442 3589999999 7777776665521 123 33333 233333
Q ss_pred C-----CCCCCccEEEecCcccccCC-------HHHHHHHHHhccCCCCEEEEE
Q 022929 170 P-----FPTDYADRYVSAGSIEYWPD-------PQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 170 ~-----~~~~~~D~i~~~~~l~~~~~-------~~~~l~~~~~~L~pgG~l~i~ 211 (290)
. ...+.+=+|-|...+|++.+ +...+-...+.|+|.-.+++.
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 1 22232334445666777752 223344555678998666664
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=89.98 E-value=3.8 Score=35.07 Aligned_cols=93 Identities=20% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++......+..... . ......+|+++.....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~~~d~vl~~~~~- 169 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVAADTA---D-EIGGRGADVVIEASGS- 169 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccccccch---h-hhcCCCCCEEEEccCC-
Confidence 3788899889875 77777788876 456 9999999988887775431111110000 1 1123458988853211
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...+....+.|+++|.++...
T Consensus 170 -----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 170 -----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred -----hHHHHHHHHHhcCCcEEEEEe
Confidence 236678888999999998764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.12 Score=44.79 Aligned_cols=97 Identities=27% Similarity=0.364 Sum_probs=64.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCce----EEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECK----IVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~----~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
.+..|+|+=+|-|+++....-..+...|+++|.++..++..+.++..+++. .+.+|-.. +-++...|-|....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnLGL-- 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNLGL-- 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheeecc--
Confidence 458899999999999984433335689999999999999988877655543 33444433 33345577776432
Q ss_pred cccCCHHHHHHHHHhccCCCCE-EEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGK-ACII 211 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~-l~i~ 211 (290)
+|.-++-.-.+..+|+|.|- ++-+
T Consensus 271 --lPSse~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 271 --LPSSEQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred --ccccccchHHHHHHhhhcCCcEEEE
Confidence 34444444556777887544 4433
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.57 E-value=2.2 Score=38.26 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC-ceEEEcCCCCC----C--CCCCCcc---
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDAEDL----P--FPTDYAD--- 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-v~~~~~d~~~l----~--~~~~~~D--- 177 (290)
+++.+||-.|+|. |..+..+++.. +.+++++|.+++-++.+++... .. +.....+..++ . .....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGA-DLTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCC-ceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 3789999999976 77778888886 5689999999999988876422 11 10001000000 0 1112354
Q ss_pred -EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 178 -RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 178 -~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+|+- .... ...++...++|++||++++....
T Consensus 243 d~v~d-----~~g~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 243 WKIFE-----CSGS-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CEEEE-----CCCC-hHHHHHHHHHHhcCCeEEEECcC
Confidence 4442 1211 24566778899999999887643
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.49 E-value=2 Score=37.07 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=62.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCCCCC---CCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPFPT---DYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~~~~---~~~D~i~~~~ 183 (290)
.++.|+-+| ..-..++.++-..-..++..+|+++..+....+- ...+|++.+..|+.+ |+++ .+||+++..
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTD- 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITD- 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecC-
Confidence 678899999 4444444444332257899999999887776543 455678999999976 5544 469988732
Q ss_pred cccccCCHHHHHHHHHhccCCC---CEEEEE
Q 022929 184 SIEYWPDPQRGIREAYRVLKLG---GKACII 211 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pg---G~l~i~ 211 (290)
--..++....++.+=...||.- |++.+.
T Consensus 229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 229 PPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred chhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 1122222334555555666655 566554
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.59 Score=35.34 Aligned_cols=88 Identities=24% Similarity=0.211 Sum_probs=45.2
Q ss_pred CCCEEEEEcCccc-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~ 187 (290)
+..+|+|||-|.= ..+..|.+. +..|+++|+.+. .+ . .++.++..|+.+..+. -...|+|++...-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a----~-~g~~~v~DDif~P~l~iY~~a~lIYSiRPP-- 80 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KA----P-EGVNFVVDDIFNPNLEIYEGADLIYSIRPP-- 80 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------STTEE---SSS--HHHHTTEEEEEEES----
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---cc----c-cCcceeeecccCCCHHHhcCCcEEEEeCCC--
Confidence 3459999999974 455666666 699999999887 12 2 4778999999873311 1348999975432
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
++.+..+.++.+.+ |.-+++..
T Consensus 81 -~El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 81 -PELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp -TTSHHHHHHHHHHH--T-EEEEE-
T ss_pred -hHHhHHHHHHHHHh--CCCEEEEC
Confidence 23334444444433 44555543
|
; PDB: 2K4M_A. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=89.37 E-value=5.8 Score=36.35 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc---CCCC-CC--CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG---DAED-LP--FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~---d~~~-l~--~~~~~~D~i~~ 181 (290)
.++++||=.|+|. |..+..+++..+...++.+|.+++-++.+++... . .+... +..+ +. .....+|+++-
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga-~--~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC-E--TVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC-e--EEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 3678887788875 7777778887644456677898888888886432 1 11111 1100 00 12235898885
Q ss_pred cCcccc--------cCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 182 AGSIEY--------WPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 182 ~~~l~~--------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
...... ..+....+++..+++++||.+++....
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 433210 011234788899999999999987653
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.37 E-value=1.6 Score=39.78 Aligned_cols=96 Identities=21% Similarity=0.193 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-----CCCC-C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-----DAED-L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-----d~~~-l-~~~~~~~D~i~ 180 (290)
.++.+||-.|+|. |..+..+++..+...++++|.+++..+.+++... . .++.. +... + ....+.+|+|+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa-~--~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV-T--DFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-c--EEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 4789999999875 7777778887644468999999998888875422 1 11211 1100 0 01122589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...+....+.+++| |.+++...
T Consensus 269 d~~G-----~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 269 ECVG-----D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ECCC-----C-hHHHHHHHHhhccCCCEEEEECC
Confidence 5322 1 23567788889998 99987643
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.86 Score=42.29 Aligned_cols=106 Identities=18% Similarity=0.022 Sum_probs=71.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCC-------CCCCCCCccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAED-------LPFPTDYADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~-------l~~~~~~~D~i 179 (290)
.+..+|-+|-|.|.+...+...+|..+++++++++++++.|+.++... +......|..+ ..-.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 456788999999999999999999899999999999999999875421 11122222211 01134568988
Q ss_pred EecC-c--ccccCCH------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 180 VSAG-S--IEYWPDP------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 180 ~~~~-~--l~~~~~~------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
...- . .+-...+ +.++..+...|.|.|.+++---..
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 7521 1 2222211 368889999999999997754443
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.25 Score=44.87 Aligned_cols=58 Identities=28% Similarity=0.237 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC-----CceEEEcCC
Q 022929 107 LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVEGDA 166 (290)
Q Consensus 107 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~~d~ 166 (290)
..+++..|.|+-||-|-++..++.. ++.|++-|+++++++..+.+...+ +++.+..|.
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 3458999999999999999999988 699999999999999999886543 355555555
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.4 Score=32.70 Aligned_cols=85 Identities=21% Similarity=0.146 Sum_probs=53.2
Q ss_pred CCEEEEEcCccc-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecCccccc
Q 022929 111 NMLVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEYW 188 (290)
Q Consensus 111 ~~~vLDiG~G~G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~~ 188 (290)
..+|+|+|-|-= ..+..++++ +..++++|+++. +.. .++.++..|+.+.... -...|+|+|.-
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~-~g~~~v~DDitnP~~~iY~~A~lIYSiR----- 78 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP-EGLRFVVDDITNPNISIYEGADLIYSIR----- 78 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc-ccceEEEccCCCccHHHhhCccceeecC-----
Confidence 358999999864 345556665 689999999776 222 5788999999874311 13378888632
Q ss_pred CCHHHHHHHHHhccCC-CCEEEEE
Q 022929 189 PDPQRGIREAYRVLKL-GGKACII 211 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~p-gG~l~i~ 211 (290)
.+.++.+.+.++.+. |.-+++.
T Consensus 79 -pppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 79 -PPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred -CCHHHHHHHHHHHHhhCCCEEEE
Confidence 233444444444433 3445444
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=88.86 E-value=7.6 Score=35.78 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
-++++|+=+|+|. |......++.+ +.+|+++|.++.-...+... +.... ++.+. . ...|+|+...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~----G~~v~--~leea-l--~~aDVVItaT---- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD----GFRVM--TMEEA-A--KIGDIFITAT---- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc----CCEeC--CHHHH-H--hcCCEEEECC----
Confidence 3789999999997 66655566655 67999999888654444321 22221 22221 1 2479988642
Q ss_pred cCCHHHHHH-HHHhccCCCCEEEEEccC
Q 022929 188 WPDPQRGIR-EAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 188 ~~~~~~~l~-~~~~~L~pgG~l~i~~~~ 214 (290)
.. ..++. +....+|+|+.++.....
T Consensus 259 -G~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 -GN-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred -CC-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 22 33444 588899999999887654
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=88.28 E-value=3 Score=33.70 Aligned_cols=95 Identities=21% Similarity=0.146 Sum_probs=56.6
Q ss_pred EEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--------------------CCceEEEcCCCCCC
Q 022929 113 LVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------KECKIVEGDAEDLP 170 (290)
Q Consensus 113 ~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------------~~v~~~~~d~~~l~ 170 (290)
+|.=||+|. | .++..++.. +.+|+.+|.+++.++.++++... .++. ...|+.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh
Confidence 366789986 4 344445554 89999999999988887654210 1122 344544432
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
..|+|+=. +.+.++-.+++++++.+++.|+-.+.-.+...
T Consensus 78 ----~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 78 ----DADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp ----TESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred ----hhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 37887732 33344445689999999999999887754433
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.25 E-value=3 Score=37.64 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++.+||-.|+|. |..+..+++.. +.++++++.+++....+.+..... .++. .+...+....+.+|+++-...
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~--~vi~~~~~~~~~~~~~~~D~vid~~g-- 256 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGAD--SFLVSTDPEKMKAAIGTMDYIIDTVS-- 256 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCc--EEEcCCCHHHHHhhcCCCCEEEECCC--
Confidence 3678888899885 77878888886 568888887765443332222211 1111 110011000124888884322
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...++...+.|+++|.++....
T Consensus 257 ---~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 ---A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ---C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 1 2356778899999999987653
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.18 E-value=4.3 Score=36.51 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++.+|+-.|+|. |..+..+++.. +.++++++.+++....+.+..... ..+. .+...+.-....+|+++-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga~--~~i~~~~~~~~~~~~~~~D~vid~~g-- 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGAD--DYLVSSDAAEMQEAADSLDYIIDTVP-- 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCCc--EEecCCChHHHHHhcCCCcEEEECCC--
Confidence 4678888888774 77777788876 567888888877666554433321 1111 110011000124788874321
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...++.+.+.|+++|.++....
T Consensus 254 ---~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 ---V-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---c-hHHHHHHHHHhccCCEEEEECC
Confidence 1 2366778899999999988754
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.71 E-value=8.6 Score=33.81 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l----~~~~~~~D~i~~~ 182 (290)
.++.+||-+|+|. |..+..+++.. +.+ +++++.+++..+.+++... . .++..+-.+. ....+.+|+++..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKLGA-T--ETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC-e--EEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 3778999998763 67777778876 455 8899999988887764321 1 1222111110 1133459999854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. ....+..+.+.|+++|.++...
T Consensus 234 ~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 234 TG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 21 1246778889999999998764
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.3 Score=40.25 Aligned_cols=100 Identities=19% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++.+|+=+|+|. |..+...+... +.+|+.+|.+++..+.+...... .+.....+...+.-.-..+|+|+..-....-
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCc-eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 456799999984 67777777766 56899999998877766544321 1111111111111001248999975322111
Q ss_pred CCHHHHHHHHHhccCCCCEEEEE
Q 022929 189 PDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
+.+.-+-++..+.++|++.++-.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEE
Confidence 11222335566778999877653
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=87.63 E-value=3 Score=36.89 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=60.8
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHH-HHHhhhCCCCCceEEEc-CCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~v~~~~~-d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|+-||+|. |......+...+..+++.+|.+++-. +.+++. .. ..... |..+. . ..+|+|++...-.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g~---~~~~~~~~~~~-l--~~aDvVi~at~~~ 249 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-GG---NAVPLDELLEL-L--NEADVVISATGAP 249 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-CC---eEEeHHHHHHH-H--hcCCEEEECCCCC
Confidence 678999999985 55444444443356899999997754 444432 21 22221 11111 1 2389999865543
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
+. ...+..+......++.+ +.+...+.........-.....++.++|.++.++
T Consensus 250 ~~---~~~~~~~~~~~~~~~~~-viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 250 HY---AKIVERAMKKRSGKPRL-IVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred ch---HHHHHHHHhhCCCCCeE-EEEeCCCCCCchhhccCCCcEEEEHHHhHHHHHH
Confidence 32 33334433333223444 4444433221111111011123467777776554
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=87.61 E-value=5.1 Score=35.27 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-CCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-FPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-~~~~~~D~i~~~~~l~ 186 (290)
.++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++.. .. .++...-.... ...+.+|+++....-
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g-~~--~~~~~~~~~~~~~~~~~~d~vi~~~~~- 235 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLG-AD--EVVDSGAELDEQAAAGGADVILVTVVS- 235 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhC-Cc--EEeccCCcchHHhccCCCCEEEECCCc-
Confidence 367889999987 577777777775 678999999998888875432 11 11111100000 012358988854211
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
...+..+.+.|+++|.++....
T Consensus 236 -----~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 236 -----GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -----HHHHHHHHHhcccCCEEEEECC
Confidence 2356778899999999987653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.53 E-value=2.4 Score=37.82 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCc--cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-C--CCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L--PFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G--~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l--~~~~~~~D~i~~~~ 183 (290)
+++.+||=.|+. -|.+++.+++..+. .++++--+++-.+.+++.....-+.+...|+.+ + ......+|+|+..-
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 368999999843 47899999999744 777777777777777665432223333333311 1 12233699999543
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.- ..+.+....|+++|.++......
T Consensus 220 G~-------~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 220 GG-------DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CH-------HHHHHHHHHhccCCEEEEEecCC
Confidence 32 46777889999999998875543
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=87.47 E-value=3.1 Score=37.12 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----C-CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~-~~~~~~D~i~~ 181 (290)
+++.+||-.|+|. |..+..+++..+...++++|.+++..+.+++... . .++..+-.++ . .....+|+++.
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~-~--~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA-T--DIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-c--eEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 3678999888874 7777778887644469999999888888775321 1 1111111110 0 12345898885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... . ...+..+.+.|+++|.++....
T Consensus 242 ~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 242 AGG-----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 322 1 2467888999999999887543
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=87.12 E-value=3.1 Score=35.53 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=64.2
Q ss_pred CCEEEEEcCccchhHHHHHh---hC--CCCeEEEEeCCH--------------------------HHHHHHhhhCC----
Q 022929 111 NMLVVDVGGGTGFTTLGIVK---HV--DAKNVTILDQSP--------------------------HQLAKAKQKEP---- 155 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~---~~--~~~~v~~vD~s~--------------------------~~~~~a~~~~~---- 155 (290)
+..|+|+||-.|..+..++. .+ ++.++++.|.=+ ...+..+++..
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 46799999999986655433 22 356788887521 13344444433
Q ss_pred -CCCceEEEcCCC-CCC-CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCC
Q 022929 156 -LKECKIVEGDAE-DLP-FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFP 232 (290)
Q Consensus 156 -~~~v~~~~~d~~-~l~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 232 (290)
..++.++.+.+. .+| .+..++-++..- ...-......|+.+...|.|||.+++-+...+.
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD--~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~g--------------- 217 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLD--CDLYESTKDALEFLYPRLSPGGIIIFDDYGHPG--------------- 217 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTTHH---------------
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEe--ccchHHHHHHHHHHHhhcCCCeEEEEeCCCChH---------------
Confidence 246888888873 233 222223222221 111122346899999999999999987765511
Q ss_pred CHHHHHHHHHHCCCc
Q 022929 233 KEEEYIEWFQKAGFK 247 (290)
Q Consensus 233 ~~~~~~~ll~~aGf~ 247 (290)
..+.+.+.+++.|.+
T Consensus 218 cr~AvdeF~~~~gi~ 232 (248)
T PF05711_consen 218 CRKAVDEFRAEHGIT 232 (248)
T ss_dssp HHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCC
Confidence 235566778888875
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.81 E-value=7.9 Score=33.88 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
.++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++. ... ... +.... .....+|+++-...
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~-g~~---~~~-~~~~~-~~~~~~d~vid~~g--- 223 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRL-GVE---TVL-PDEAE-SEGGGFDVVVEATG--- 223 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHc-CCc---EEe-Ccccc-ccCCCCCEEEECCC---
Confidence 3678898888764 56666667765 67799999999988888863 211 111 11111 23345999985421
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
....+..+.+.|+++|.++...
T Consensus 224 ---~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 224 ---SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ---ChHHHHHHHHHhhcCCEEEEEc
Confidence 1345677888999999998743
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.48 E-value=7.2 Score=34.84 Aligned_cols=96 Identities=24% Similarity=0.288 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc----CCCC--CCCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG----DAED--LPFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~----d~~~--l~~~~~~~D~i~~ 181 (290)
+++.+|.-+|||- |..++.-++..+..+++++|++++-++.|++... .+++.. |+-+ ....+...|..+
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA---T~~vn~~~~~~vv~~i~~~T~gG~d~~~- 259 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA---THFVNPKEVDDVVEAIVELTDGGADYAF- 259 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC---ceeecchhhhhHHHHHHHhcCCCCCEEE-
Confidence 4789999999985 7777777787777899999999999999997633 222222 1100 012233466664
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+...+. ..++.....+.++|..+++..
T Consensus 260 ----e~~G~~-~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 260 ----ECVGNV-EVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred ----EccCCH-HHHHHHHHHHhcCCeEEEEec
Confidence 222333 377888888888999888643
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.34 E-value=4.2 Score=36.74 Aligned_cols=96 Identities=20% Similarity=0.289 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cC----CCC-C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GD----AED-L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d----~~~-l-~~~~~~~D~i~ 180 (290)
+++.+||=.|+|. |..+..+++..+..+|+++|.+++-++.+++... .. .+. .+ ..+ + ....+.+|+++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga-~~--~i~~~~~~~~~~~~v~~~~~~g~d~vi 260 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA-TD--CVNPNDYDKPIQEVIVEITDGGVDYSF 260 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-Ce--EEcccccchhHHHHHHHHhCCCCCEEE
Confidence 4789999999875 7777888888643479999999999998876432 11 111 11 000 0 01112588887
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...+....+.++++ |.+++...
T Consensus 261 d~~G-----~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 261 ECIG-----N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred ECCC-----C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 4322 1 23567778889886 98887654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.30 E-value=1 Score=41.11 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=54.0
Q ss_pred HHHHHHhhhCCCCCceEEEcCCCCC--CCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 145 HQLAKAKQKEPLKECKIVEGDAEDL--PFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 145 ~~~~~a~~~~~~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
+..+..+++. .+++++.+++.+. ..+++++|.++....+.|.++. .+.++++.+.++|||++++-+...+.
T Consensus 265 e~f~~lr~~~--drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 265 ENFEALRARL--DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred hHHHHHhcCC--CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 4444444444 5788899888653 2457789999999999999764 47999999999999999997665543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=86.27 E-value=14 Score=34.02 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=59.7
Q ss_pred CCCCEEEEEc-Cc-cchhHHHHHhhCC--CCeEEEEeCCHHHHHHHhhhCCCC----CceEEEcCCC---CC-----C-C
Q 022929 109 NRNMLVVDVG-GG-TGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLK----ECKIVEGDAE---DL-----P-F 171 (290)
Q Consensus 109 ~~~~~vLDiG-~G-~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~----~v~~~~~d~~---~l-----~-~ 171 (290)
+++.+|+=+| +| -|..+..+++..+ ..+++++|.+++-++.+++..... +......|.. ++ . .
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 3678898887 45 4788888887752 247999999999999988752210 2221111211 11 0 1
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
....+|+++.... . ...+....+.++++|.+++.
T Consensus 254 ~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 2235898885321 1 24677788999988876543
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.13 E-value=7.1 Score=35.67 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=48.1
Q ss_pred CEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEec
Q 022929 112 MLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSA 182 (290)
Q Consensus 112 ~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~ 182 (290)
.+||=||||. |......+......+|+..|-|.+..+.+..... .+++..+.|+.+.+ .-.+ +|+|++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-~~v~~~~vD~~d~~al~~li~~-~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-GKVEALQVDAADVDALVALIKD-FDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-ccceeEEecccChHHHHHHHhc-CCEEEEe
Confidence 4799999974 5444444333334899999999999888876643 27888999987753 2223 6988863
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=15 Score=33.91 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=55.3
Q ss_pred CEEEEEcCccc--hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCce-----EE-EcCCCCCCCCCCCccEEE
Q 022929 112 MLVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECK-----IV-EGDAEDLPFPTDYADRYV 180 (290)
Q Consensus 112 ~~vLDiG~G~G--~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~-----~~-~~d~~~l~~~~~~~D~i~ 180 (290)
.+|.=||.|.- .++..+++. +.+|+++|.+++.++....... .++++ .. .+.+.. ....+..|+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~-~~~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRA-TTTPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceee-ecccccCCEEE
Confidence 56888898863 344445555 6899999999998886432110 00000 00 000000 00012378877
Q ss_pred ecCccc-------ccCCHHHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 181 SAGSIE-------YWPDPQRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 181 ~~~~l~-------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
..---. .+......++.+...+++|..+++.+...+.
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 532221 1112235677888889888877776655543
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.97 E-value=4.5 Score=36.27 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=62.4
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc----CCCC-C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG----DAED-L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~----d~~~-l-~~~~~~~D~i~ 180 (290)
.++.+||=.|+ | .|..+..+++.. +.++++++.+++-.+.+++..... ..+.. +..+ + ....+.+|+++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~--~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFD--EAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCC--EEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 47899999997 4 588888888886 678999999998888776433222 12211 1100 0 01123589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-.-. ...+....+.|+++|.+++...
T Consensus 234 d~vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 234 DNVG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred ECCC-------HHHHHHHHHHhccCCEEEEECc
Confidence 4322 1367788899999999987653
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=85.64 E-value=4 Score=35.99 Aligned_cols=93 Identities=17% Similarity=0.055 Sum_probs=61.0
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-CCC-----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL-----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~~l-----~~~~~~~D~i~ 180 (290)
.++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++.. .. .++..+- ... ....+.+|+++
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~lG-a~--~vi~~~~~~~~~~~~~~~~~~gvdvv~ 212 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKLG-FD--VAFNYKTVKSLEETLKKASPDGYDCYF 212 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcC-CC--EEEeccccccHHHHHHHhCCCCeEEEE
Confidence 47889998884 3588888888886 678999999998888886532 21 1121111 010 11223589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-.. .. ..+....++|+++|.++...
T Consensus 213 d~~-----G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 213 DNV-----GG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred ECC-----CH--HHHHHHHHHhCcCcEEEEec
Confidence 432 11 24578889999999998764
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=85.39 E-value=19 Score=32.24 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC--------C-CCCCCcc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--------P-FPTDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l--------~-~~~~~~D 177 (290)
.++.+||=.|+|. |..+..+++.. +. ++++++.+++..+.+++.. .. .++..+-... . .....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g-~~--~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREFG-AD--ATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcC-CC--eEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 3678888888764 66777777876 55 8999999888877776432 11 1111111000 0 1223589
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+++-...- ...+....+.|+++|+++....
T Consensus 252 ~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 252 VVIEASGH------PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EEEECCCC------hHHHHHHHHHhccCCEEEEEcC
Confidence 98853211 2356778899999999987653
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=85.39 E-value=4.6 Score=35.81 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~ 181 (290)
.++.+||..|+|. |..+..+++..+...+++++.++...+.+++... . .++...-.++ ....+.+|+++.
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~-~--~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA-T--DIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC-c--EEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 3678888888763 7777888887632478888888877777665421 1 1111111110 012245998885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...- ...+....+.|+++|.++...
T Consensus 243 ~~g~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVGF------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 3211 246788889999999988654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=16 Score=33.50 Aligned_cols=99 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred EEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------------CCceEEE-cCCCCCCCCCCCccE
Q 022929 113 LVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------KECKIVE-GDAEDLPFPTDYADR 178 (290)
Q Consensus 113 ~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~v~~~~-~d~~~l~~~~~~~D~ 178 (290)
+|-=||.|. |.-...+... +.+|+++|++++.++.+.+.... .+..+.. .|..+ . ....|+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~--~-~~~ad~ 76 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE--A-YRDADY 76 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh--h-hcCCCE
Confidence 456678884 5433334333 57899999999999888763211 1112211 11111 0 123687
Q ss_pred EEecCccc-c----cCC---HHHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 179 YVSAGSIE-Y----WPD---PQRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 179 i~~~~~l~-~----~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
|+..-.-. . ..+ .++.++.+.+ +++|..+++.+...+.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg 122 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG 122 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 77542211 0 112 2356677777 6777766666555543
|
|
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=85.14 E-value=2.1 Score=37.43 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=40.8
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
+.||+|+......|.-.+. +..+++|+|.|++...-.-.....+.... -.+.+.++++++||+.+.
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~------F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQE------FVKKVKELAKAAGFKPVT 286 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHH------HHHHHHHHHHHCCCcccc
Confidence 4699998765554443333 77889999999988642211000011111 146888999999997543
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.13 E-value=4.7 Score=36.37 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC--CC----C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA--ED----L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~--~~----l-~~~~~~~D~i~ 180 (290)
.++.+||=+|+|. |..+..+++..+..+|+++|.+++-.+.+++... .. ++...- .+ + ....+.+|+|+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga-~~--~i~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA-TD--FINPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-Cc--EeccccccchHHHHHHHHhCCCCCEEE
Confidence 4788999999874 6677777887643479999999998888865321 11 111100 00 0 01123589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...+....+.++++ |.+++...
T Consensus 260 d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 260 ECTG-----N-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ECCC-----C-hHHHHHHHHhcccCCCEEEEEcC
Confidence 4321 1 24667788889885 99887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.10 E-value=4.6 Score=35.76 Aligned_cols=94 Identities=22% Similarity=0.335 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC----C--CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED----L--PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~----l--~~~~~~~D~i~~ 181 (290)
.++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++.. .. +++...-.+ + ...+..+|+++.
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g-~~--~v~~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELG-AD--DTINVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhC-CC--EEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence 3778999998874 77888888886 688999988888888776432 11 111111011 0 022345899986
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...- ...+..+.+.|+++|.++...
T Consensus 234 ~~g~------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 234 ATGN------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 5211 245778889999999988654
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.08 E-value=0.84 Score=39.86 Aligned_cols=55 Identities=29% Similarity=0.357 Sum_probs=36.6
Q ss_pred CceEEEcCCCCC--CCCCCCccEEEec--Ccc--c---c---c------CCHHHHHHHHHhccCCCCEEEEEc
Q 022929 158 ECKIVEGDAEDL--PFPTDYADRYVSA--GSI--E---Y---W------PDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 158 ~v~~~~~d~~~l--~~~~~~~D~i~~~--~~l--~---~---~------~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+..++++|+.+. .+++++||+|++. +.. . . + .-....+.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 446777887553 3566789999983 211 0 0 0 001368899999999999998863
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=84.71 E-value=4.9 Score=36.27 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-CCC-CC-----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAE-DL-----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d~~-~l-----~~~~~~~D~i~ 180 (290)
+++.+||=+|+|. |..+..+++..+..+++++|.+++-++.+++... . .++.. +.. ++ ....+.+|+|+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa-~--~~i~~~~~~~~~~~~v~~~~~~g~d~vi 261 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA-T--DCVNPKDHDKPIQQVLVEMTDGGVDYTF 261 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-C--EEEcccccchHHHHHHHHHhCCCCcEEE
Confidence 4788999999874 6777777887643379999999999888875321 1 11211 100 00 01123589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...+....+.|+++ |.+++...
T Consensus 262 d~~g-----~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 262 ECIG-----N-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred ECCC-----C-hHHHHHHHHhhccCCCeEEEEcc
Confidence 5321 1 24667788899887 98887654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=84.55 E-value=2.3 Score=34.47 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=49.1
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------CCceEEEcCCCCCC---------CCCCCc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLP---------FPTDYA 176 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~v~~~~~d~~~l~---------~~~~~~ 176 (290)
..|+.+|||--.....+....++.+++-+|. +++++.-++.... .+.+++..|+.+.. +..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 4899999998888777777655678888888 6666555444221 23567888987521 333445
Q ss_pred cEEEecCcccccCCH
Q 022929 177 DRYVSAGSIEYWPDP 191 (290)
Q Consensus 177 D~i~~~~~l~~~~~~ 191 (290)
-++++-.++.|++..
T Consensus 159 tl~i~Egvl~Yl~~~ 173 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPE 173 (183)
T ss_dssp EEEEEESSGGGS-HH
T ss_pred eEEEEcchhhcCCHH
Confidence 688888888888753
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.44 E-value=8 Score=34.45 Aligned_cols=92 Identities=16% Similarity=0.057 Sum_probs=55.3
Q ss_pred CCEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------C---------CCceEEEcCCCCCCCC
Q 022929 111 NMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------L---------KECKIVEGDAEDLPFP 172 (290)
Q Consensus 111 ~~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~---------~~v~~~~~d~~~l~~~ 172 (290)
-.+|.=||+|. | .++..++.. +.+|+..|.+++.++.+++... . .++++. .|+.+ ..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~-av- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA-CV- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH-Hh-
Confidence 36788999985 3 455555555 8999999999988776554211 0 011111 11111 01
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 209 (290)
...|+|+-+ +.+.+.-.+.+++++.+.++|+..|.
T Consensus 82 -~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 82 -ADADFIQES-APEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred -cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 236777743 44434444578899999999987443
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=84.31 E-value=14 Score=32.80 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=58.9
Q ss_pred CEEEEEcC--ccchhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEecC
Q 022929 112 MLVVDVGG--GTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSAG 183 (290)
Q Consensus 112 ~~vLDiG~--G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~~ 183 (290)
.+||=.|+ |.|..+..+++.. +. ++++++.+++..+.+++...... ++..+-.++ ...++.+|+|+-..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~--vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDA--AINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcE--EEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 78998886 4688888888886 55 79999999888887765433221 222111111 01124599988532
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
. . ..+....+.|+++|.++...
T Consensus 233 g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred C-----c--HHHHHHHHHhccCCEEEEEe
Confidence 2 1 23577889999999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.23 E-value=5.5 Score=34.23 Aligned_cols=123 Identities=19% Similarity=0.146 Sum_probs=78.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++..-+|+|+-.|.++-.+.++ +-.|++||--+ | |........++....|-....-.....|-.+|..| .
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~-m---a~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV----E 280 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGP-M---AQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV----E 280 (358)
T ss_pred CCceeeecccCCCccchhhhhc--ceEEEEeccch-h---hhhhhcccceeeeeccCcccccCCCCCceEEeehh----c
Confidence 7899999999999999999998 78999999743 3 23333445688888888776434556998888765 3
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
.|.++-..+..+|..|=.--.+ ..-..++.+-+..... .++.+.+.+.+.|+.
T Consensus 281 kP~rv~~li~~Wl~nGwCre~I--fNLKLPMKkRy~Ev~~---~L~~~~~~l~~~g~~ 333 (358)
T COG2933 281 KPARVAALIAKWLVNGWCRETI--FNLKLPMKKRYEEVRL---CLARLEEQLDEHGIN 333 (358)
T ss_pred CcHHHHHHHHHHHHcchHHHHH--HhccCchHHHHHHHHH---HHHHHHHHHHhcCCc
Confidence 4666767777777544110000 0001112222222221 456777888888986
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=84.10 E-value=11 Score=30.58 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=60.2
Q ss_pred EEEEEcCcc-ch-hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCC-----------ceE-EEcCCCCCCCCCCC
Q 022929 113 LVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKE-----------CKI-VEGDAEDLPFPTDY 175 (290)
Q Consensus 113 ~vLDiG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~-----------v~~-~~~d~~~l~~~~~~ 175 (290)
+|-=||.|. |. .+..+++. +.+|+|+|++++.++...+-.. .++ -.+ ...|...- -..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~a---i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEA---IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHH---HHH
T ss_pred EEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhh---hhc
Confidence 566788885 53 33444454 7899999999998887764311 111 011 11222110 123
Q ss_pred ccEEEecCcccc----cCC---HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 176 ADRYVSAGSIEY----WPD---PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 176 ~D~i~~~~~l~~----~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
.|+++..--... .+| ..+.++.+...++++-.+++.+...+.. +.+.+..++++.+
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt--------------t~~~~~~ile~~~ 139 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT--------------TEELLKPILEKRS 139 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH--------------HHHHHHHHHHHHC
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee--------------ehHhhhhhhhhhc
Confidence 677665321111 112 3578899999999977777776666543 3335566777655
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria | Back alignment and domain information |
|---|
Probab=83.95 E-value=14 Score=27.88 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=53.8
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
-.|+|+.-+.-.. .+....|-.+.+.|..+|.+.+.+|..... .+.++.++.+....+|+.......+
T Consensus 45 vvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~gr~-----------g~V~~~~I~eaA~taGL~~t~~~~v 112 (127)
T PF11253_consen 45 VVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAGRP-----------GHVEPSDIREAAPTAGLVQTKSCAV 112 (127)
T ss_pred cccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCCCC-----------CCCCHHHHHHHHhhcCCeeeeeecc
Confidence 4888876433221 244567778889999999999998765431 2347789999999999998888888
Q ss_pred Ccccc
Q 022929 255 GPKWY 259 (290)
Q Consensus 255 ~~~~~ 259 (290)
+..|.
T Consensus 113 ~~dWs 117 (127)
T PF11253_consen 113 GDDWS 117 (127)
T ss_pred CCCcc
Confidence 87764
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=83.93 E-value=10 Score=37.84 Aligned_cols=136 Identities=13% Similarity=0.054 Sum_probs=81.6
Q ss_pred CEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------C------------CCceEEEcCCCCC
Q 022929 112 MLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAEDL 169 (290)
Q Consensus 112 ~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~------------~~v~~~~~d~~~l 169 (290)
.+|.-||+|+ | .++..++.. +..|+.+|.+++.++.+.++.. . .++++ ..|+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDYAG- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH-
Confidence 5799999998 3 455555555 8999999999999887654311 0 11221 223322
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh------------hHHHhh--------
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY------------FADVWM-------- 229 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~------------~~~~~~-------- 229 (290)
+ ...|+|+= .+.+.+.-.+++++++.++++|+..|.-.+...+...+... +...+.
T Consensus 390 -~--~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~ 465 (715)
T PRK11730 390 -F--ERVDVVVE-AVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (715)
T ss_pred -h--cCCCEEEe-cccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeC
Confidence 1 23787773 35555555668999999999999877654433322111111 111000
Q ss_pred -cCC---CHHHHHHHHHHCCCcEEEEEEcC
Q 022929 230 -LFP---KEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 230 -~~~---~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
... +.+...++++..|...+.+.+.+
T Consensus 466 g~~T~~~~~~~~~~~~~~lgk~pv~v~d~p 495 (715)
T PRK11730 466 GEKTSDETIATVVAYASKMGKTPIVVNDCP 495 (715)
T ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCcC
Confidence 001 24667788899999988886544
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=83.91 E-value=5.1 Score=35.47 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~~ 184 (290)
.++.+||=.|+|. |..+..+++.. +.+++.++.+++-.+.+++... . .++...-.++. .....+|+++....
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~--~~i~~~~~~~~~~~~~~~~~d~vi~~~g 237 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKLGA-H--HYIDTSKEDVAEALQELGGAKLILATAP 237 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcCC-c--EEecCCCccHHHHHHhcCCCCEEEECCC
Confidence 3678999999764 77777778876 5789999999888888865321 1 11111111100 00124888885311
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....+....+.|+++|.++....
T Consensus 238 ------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 238 ------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ------chHHHHHHHHHcccCCEEEEEec
Confidence 12467778899999999987643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.89 E-value=19 Score=31.95 Aligned_cols=94 Identities=22% Similarity=0.313 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-------C--CCCCCCcc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAED-------L--PFPTDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-------l--~~~~~~~D 177 (290)
.++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++. ... .++..+-.. + ......+|
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~-g~~--~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL-GAT--HTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc-CCc--EEeccccccchhHHHHHHHHhCCCCCC
Confidence 3788888888875 77888888886 455 89998888887777553 211 111111111 0 12334599
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+|+-...- ...+....+.|+++|.++...
T Consensus 237 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 237 VVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 99854321 236778899999999988764
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=83.89 E-value=2 Score=32.90 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=44.6
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++.++|=||+|- |......+...+..+++.+.-+.+-.+...+.....++++... .++.-.-..+|+|+......+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~--~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPL--EDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEG--GGHCHHHHTESEEEE-SSTTST
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeH--HHHHHHHhhCCeEEEecCCCCc
Confidence 689999999984 4433333333344669999998775555444443334444443 3332112349999987655443
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.84 E-value=2.3 Score=33.20 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=24.5
Q ss_pred EEcCccc--hhHHHHH--hhCCCCeEEEEeCCHHHHHHHhhh
Q 022929 116 DVGGGTG--FTTLGIV--KHVDAKNVTILDQSPHQLAKAKQK 153 (290)
Q Consensus 116 DiG~G~G--~~~~~l~--~~~~~~~v~~vD~s~~~~~~a~~~ 153 (290)
|||++.| .....+. ...+..+++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 345678999999999988887766
|
; PDB: 2PY6_A. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=83.23 E-value=20 Score=31.36 Aligned_cols=93 Identities=17% Similarity=0.074 Sum_probs=61.3
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~ 181 (290)
.++.+||=.|+ |.|..+..+++.. +.++++++.+++-.+.+++.. .. .++..+-.++ ......+|+|+-
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~G-a~--~vi~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELG-FD--AVFNYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcC-CC--EEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence 37889988874 4578888888886 678999999998888887632 21 1222111111 112245898884
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
... ...+....+.|+++|.++...
T Consensus 218 ~~g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 NVG-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCC-------HHHHHHHHHhhccCCEEEEEc
Confidence 321 145688899999999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.14 E-value=5.3 Score=36.33 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=56.7
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHH-HHHHhhhCCCCCceEEEc-CCCCC-CCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQ-LAKAKQKEPLKECKIVEG-DAEDL-PFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~-~~~a~~~~~~~~v~~~~~-d~~~l-~~~~~~~D~i~~~~~l 185 (290)
++.+||-.|+|. |..+..+++.. +.++++++.+++. .+.+++. ... .++.. +...+ ... +.+|+++-...
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~l-Ga~--~~i~~~~~~~v~~~~-~~~D~vid~~G- 251 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRL-GAD--SFLVTTDSQKMKEAV-GTMDFIIDTVS- 251 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhC-CCc--EEEcCcCHHHHHHhh-CCCcEEEECCC-
Confidence 678899899875 77778888886 5789999887654 4555432 111 11111 10000 011 23888875321
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...+....+.++++|.++....
T Consensus 252 ----~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 ----A-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ----c-HHHHHHHHHhhcCCCEEEEEcc
Confidence 1 2356778889999999987653
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.71 E-value=9 Score=33.87 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCCCCC-ceEEEcCCC-CCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDAE-DLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-v~~~~~d~~-~l~~~~~~~D~i~~~~~ 184 (290)
.++.+||=.|+|. |..+..+++. .+...++++|.+++..+.+++... .. +.....+.. .+.-....+|+++....
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~~~~~g~~~d~vid~~g 237 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGA-DWVINNAQEPLGEALEEKGIKPTLIIDAAC 237 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCC-cEEecCccccHHHHHhcCCCCCCEEEECCC
Confidence 3788999999764 5666666664 344468889999988888875432 11 010011110 01101112557664321
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...+....+.|+++|.++....
T Consensus 238 -----~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 -----H-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2357788899999999988654
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=82.45 E-value=16 Score=36.37 Aligned_cols=138 Identities=17% Similarity=0.019 Sum_probs=81.2
Q ss_pred CCEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------C------------CCceEEEcCCCC
Q 022929 111 NMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAED 168 (290)
Q Consensus 111 ~~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~------------~~v~~~~~d~~~ 168 (290)
-.+|.-||+|+ | .++..++.. .+..|+.+|.+++.++.+.++.. . .++++. .|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK-AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 36899999997 3 455555523 27899999999998888754321 0 112221 22221
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH------------HHhh-------
Q 022929 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA------------DVWM------- 229 (290)
Q Consensus 169 l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~------------~~~~------- 229 (290)
+ ...|+|+=. +.+.+.-.++++.++.++++|+..|.-.+...+...+..... ..+.
T Consensus 387 --~--~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv 461 (708)
T PRK11154 387 --F--KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVI 461 (708)
T ss_pred --h--ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEE
Confidence 2 237887733 555555566899999999999988865443333221111111 0000
Q ss_pred --cCC---CHHHHHHHHHHCCCcEEEEEEcC
Q 022929 230 --LFP---KEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 230 --~~~---~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
... +.+...+++++.|...+.+.+.+
T Consensus 462 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p 492 (708)
T PRK11154 462 PHAKTSAETIATTVALAKKQGKTPIVVRDGA 492 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEEeccC
Confidence 001 24566788888999888776543
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.40 E-value=7.8 Score=34.91 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-C-CC-----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-E-DL-----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~-~l-----~~~~~~~D~i~ 180 (290)
.++.+||=.|+|. |..+..+++..+..+++++|.+++..+.+++... . .++..+- . .+ ....+.+|+++
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV-T--EFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c--eEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 4789999999874 6777778887643489999999999888876422 1 1121110 0 00 01122588887
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...+....+.++++ |.+++...
T Consensus 263 d~~G-----~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 263 ECTG-----N-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred ECCC-----C-hHHHHHHHHHhhcCCCEEEEECc
Confidence 4321 1 24566778888996 99887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.16 E-value=7.7 Score=34.58 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~ 180 (290)
.++.+||=.|+|. |..+..+++.. +. ++++++.+++..+.+++... . .++...-.++ ......+|+++
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~ga-~--~~i~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEELGA-T--IVLDPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-C--EEECCCccCHHHHHHHHhCCCCCCEEE
Confidence 3678888888763 66777777776 45 89999999988888865321 1 1111110110 01223489998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-.... ...++.+.+.|+++|.++....
T Consensus 247 d~~g~------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 247 DCAGV------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred ECCCC------HHHHHHHHHhccCCCEEEEEcc
Confidence 54221 2357788899999999987654
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=81.98 E-value=8 Score=34.24 Aligned_cols=94 Identities=23% Similarity=0.339 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCC---CC-C-CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAE---DL-P-FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~---~l-~-~~~~~~D~i~~ 181 (290)
.++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++... . .++..+-. .+ . .....+|+++.
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGA-D--DTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-C--EEecCccccHHHHHHHhCCCCCCEEEE
Confidence 3678899998775 77777788876 555 9999988888777754321 1 12211100 00 1 12234899985
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. .....+..+.+.|+++|.++...
T Consensus 234 ~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 234 AA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 41 12346778899999999988765
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.72 E-value=22 Score=27.40 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=39.8
Q ss_pred CCCEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|+-+|||. | ..+..+++. +...++.+|.+++..+...+......+.....|..+. -+.+|+|++.-...
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Dvvi~~~~~~ 92 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL---LAEADLIINTTPVG 92 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc---cccCCEEEeCcCCC
Confidence 568999999974 2 233333333 2367999999987665544332211111122232221 23489999864443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=81.37 E-value=18 Score=31.77 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
.++.+||=.|||. |..+..+++.. +.+++.++.+++..+.+++. . +.... +.... .++.+|+++....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~-g---~~~~~-~~~~~--~~~~vD~vi~~~~--- 234 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAREL-G---ADWAG-DSDDL--PPEPLDAAIIFAP--- 234 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHh-C---CcEEe-ccCcc--CCCcccEEEEcCC---
Confidence 3677888888774 55666666765 68999999888887777542 2 11111 11111 2345888774321
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....++.+.+.|+++|.++....
T Consensus 235 ---~~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 235 ---VGALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred ---cHHHHHHHHHHhhcCCEEEEEcC
Confidence 12468889999999999987653
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=81.34 E-value=2.4 Score=33.04 Aligned_cols=99 Identities=17% Similarity=0.067 Sum_probs=47.2
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-CCC---CCCCccEEEecCccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LPF---PTDYADRYVSAGSIE 186 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l~~---~~~~~D~i~~~~~l~ 186 (290)
..-|||+|=|+|..--++.+.+|+.+++.+|-.-..-.. .. .+.-.++.+|+.+ ++. ...+.-++.+....+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~---~~-P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g 104 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPS---ST-PPEEDLILGDIRETLPALARFGAGAALAHADIGTG 104 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GG---G----GGGEEES-HHHHHHHHHHH-S-EEEEEE----S
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCC---CC-CchHheeeccHHHHhHHHHhcCCceEEEEeecCCC
Confidence 366999999999999999999999999999973221111 11 1223467777633 221 111222332222222
Q ss_pred ccCCHH----HHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQ----RGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~----~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+-.+.. .+-.-+..+|.|||.++-..+
T Consensus 105 ~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 105 DKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp -HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred CcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 111111 233456688899998865433
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.33 E-value=11 Score=34.91 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=57.1
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.+++|+=+|+|. |......++.. +.+|+.+|.++.....+... +.+. .++.+. . ..+|+|+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~----G~~v--~~l~ea-l--~~aDVVI~aT----- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD----GFRV--MTMEEA-A--ELGDIFVTAT----- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc----CCEe--cCHHHH-H--hCCCEEEECC-----
Confidence 789999999996 55555555555 67999999988655444321 2221 122221 1 2489998643
Q ss_pred CCHHHHHH-HHHhccCCCCEEEEEccCC
Q 022929 189 PDPQRGIR-EAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 189 ~~~~~~l~-~~~~~L~pgG~l~i~~~~~ 215 (290)
.+. .++. .....+|+|+.++......
T Consensus 276 G~~-~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GNK-DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CCH-HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 222 3444 6888999999998776543
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=81.05 E-value=15 Score=33.36 Aligned_cols=96 Identities=22% Similarity=0.257 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc------CC----CCCCCCCCCcc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG------DA----EDLPFPTDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~------d~----~~l~~~~~~~D 177 (290)
.++.+||=.|+|. |..+..+++..+..++++++.+++..+.+++... .. ++.. +. ..+ .....+|
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~-~~--~v~~~~~~~~~~~~~v~~~-~~g~gvD 277 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGA-DY--VFNPTKMRDCLSGEKVMEV-TKGWGAD 277 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-CE--EEcccccccccHHHHHHHh-cCCCCCC
Confidence 3678888888874 6667777777643379999998887766665321 11 1111 10 011 2234589
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+|+... ......+....+.|+++|.++....
T Consensus 278 vvld~~-----g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 278 IQVEAA-----GAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred EEEECC-----CCcHHHHHHHHHHHHcCCEEEEECC
Confidence 888542 2234567788899999999987643
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=80.93 E-value=11 Score=37.65 Aligned_cols=137 Identities=12% Similarity=0.055 Sum_probs=82.5
Q ss_pred CCEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------C------------CCceEEEcCCCC
Q 022929 111 NMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAED 168 (290)
Q Consensus 111 ~~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~------------~~v~~~~~d~~~ 168 (290)
-.+|.-||+|+ | .++..++.. +..|+.+|.+++.++.++++.. . .+++. ..|...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 389 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP-TLSYAG 389 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH
Confidence 35789999997 3 455555555 8999999999999887765421 0 11211 122211
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh------------hHHHhh-------
Q 022929 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY------------FADVWM------- 229 (290)
Q Consensus 169 l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~------------~~~~~~------- 229 (290)
+ ...|+|+= .+.+.+.-.+++++++..+++|+..|.-.+...+...+... ++..+.
T Consensus 390 --~--~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv 464 (714)
T TIGR02437 390 --F--DNVDIVVE-AVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVI 464 (714)
T ss_pred --h--cCCCEEEE-cCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeec
Confidence 2 23788873 36666666678999999999999887654433322111111 100000
Q ss_pred --cC---CCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 230 --LF---PKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 230 --~~---~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
.. -+.+...+++++.|...+.+.+.+
T Consensus 465 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 495 (714)
T TIGR02437 465 RGEKSSDETIATVVAYASKMGKTPIVVNDCP 495 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeCCcc
Confidence 00 124566788889999888876543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=80.85 E-value=15 Score=30.60 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=61.2
Q ss_pred hccccCCCCCCCEEEEEcCccc----hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCC-CC-CC
Q 022929 101 ALEPADLSNRNMLVVDVGGGTG----FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDA-ED-LP 170 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G----~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~-~~-l~ 170 (290)
+++.+....+...|+++.|+-| .+++..+.+.-+.++++|-++++.+...++... .+.++|+.++. ++ ++
T Consensus 32 fISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~ 111 (218)
T PF07279_consen 32 FISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMP 111 (218)
T ss_pred HHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHh
Confidence 3444333345678999966543 344555555567899999888776655554432 23468888875 32 22
Q ss_pred CCCCCccEEEecCcccccCCHH-HHHHHHHhccCCCCEEEEEccC
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQ-RGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.- ..+|.++...-. .+.. ++|+.+. +.|.|-+++....
T Consensus 112 ~~-~~iDF~vVDc~~---~d~~~~vl~~~~--~~~~GaVVV~~Na 150 (218)
T PF07279_consen 112 GL-KGIDFVVVDCKR---EDFAARVLRAAK--LSPRGAVVVCYNA 150 (218)
T ss_pred hc-cCCCEEEEeCCc---hhHHHHHHHHhc--cCCCceEEEEecc
Confidence 22 348888754332 2323 3444322 4456777776544
|
The function of this family is unknown. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.84 E-value=25 Score=31.59 Aligned_cols=96 Identities=18% Similarity=0.266 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
.++.+||-.|+|. |..+..+++..+...++++|.+++..+.+++... . .++..+-.++ ......+|+|+-.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-~--~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-T--HVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-c--EEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 3678899888875 7777778888744479999999988887765321 1 1121111110 0113458988853
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..- ...+..+.+.|+++|.++....
T Consensus 262 ~g~------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 262 TGV------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CCC------cHHHHHHHHHhccCCEEEEeCc
Confidence 211 2357788999999999987653
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.82 E-value=27 Score=28.83 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=58.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhC-CCCCceEEEcCCCCCC-C---------CCCCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAEDLP-F---------PTDYA 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~-~~~~v~~~~~d~~~l~-~---------~~~~~ 176 (290)
++++||-.|++. .++..+++.+ .+.+|++++-+++..+...+.. ...++.++..|+.+.. . .-+.+
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 467899999764 3333333322 2689999999887665543221 1235778888886532 0 01246
Q ss_pred cEEEecCcccccC---C--------------HHHHHHHHHhccCCCCEEEEEcc
Q 022929 177 DRYVSAGSIEYWP---D--------------PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 177 D~i~~~~~l~~~~---~--------------~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
|.++......... + .-.+++.+...++++|.+++...
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 8877654322111 1 11235556666777887777653
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=80.77 E-value=27 Score=27.80 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=59.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC---CC--CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED---LP--FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~---l~--~~~~~~D~i~~~~~ 184 (290)
.+.+|+-|||=+-.....- ...+..+++..|++...-.... + +|..-|... +| + .++||+|++.--
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~------~-~F~fyD~~~p~~~~~~l-~~~~d~vv~DPP 95 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGG------D-EFVFYDYNEPEELPEEL-KGKFDVVVIDPP 95 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCC------c-ceEECCCCChhhhhhhc-CCCceEEEECCC
Confidence 5689999999774443322 1335789999999877644222 2 466666643 22 3 457999998544
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+-..+-..+..+.+..++++++.+++.+
T Consensus 96 Fl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 96 FLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 4211112356677777778999998874
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.61 E-value=18 Score=30.56 Aligned_cols=73 Identities=12% Similarity=-0.010 Sum_probs=45.7
Q ss_pred CEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CC------CCCccE
Q 022929 112 MLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP------TDYADR 178 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~------~~~~D~ 178 (290)
+++|-.|++. .++..+++.+ .+.+|+.++.+++.++...+.....++.++..|+.+.. +. .+++|+
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 4577777654 4443333321 26899999998887766655443346788899986532 00 345899
Q ss_pred EEecCcc
Q 022929 179 YVSAGSI 185 (290)
Q Consensus 179 i~~~~~l 185 (290)
++.+...
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 8875443
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=80.57 E-value=11 Score=33.35 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=62.1
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc----CCCC-C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG----DAED-L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~----d~~~-l-~~~~~~~D~i~ 180 (290)
.++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++...... ++.. +..+ + ......+|+|+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~i~~~~~~gvd~v~ 226 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDD--AFNYKEEPDLDAALKRYFPNGIDIYF 226 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCce--eEEcCCcccHHHHHHHhCCCCcEEEE
Confidence 47899999886 3578888888886 6789999988988888876333221 1211 1100 0 01124589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-... ...+....+.|+++|.++...
T Consensus 227 d~~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 227 DNVG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred ECCC-------HHHHHHHHHHhccCcEEEEec
Confidence 4321 146778899999999998764
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=80.56 E-value=8.1 Score=36.24 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=62.7
Q ss_pred HHHhhccccCCCCCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~ 175 (290)
..+.+++.....-.+++|+=+|+|. |......++.+ +.+|+++|.++.....+... +..+. ++.+. . ..
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~----G~~vv--~leEa-l--~~ 309 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME----GYQVL--TLEDV-V--SE 309 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc----CCeec--cHHHH-H--hh
Confidence 3444444433333789999999997 65555555555 67999999988654444322 11211 22221 1 23
Q ss_pred ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.|+|+.... +..-+..+....+|+|+.++-....
T Consensus 310 ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 310 ADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCEEEECCC-----CccchHHHHHhcCCCCCEEEEcCCC
Confidence 799986322 2222347788899999999887653
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=80.52 E-value=12 Score=33.20 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=58.6
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC-ceEEEcCC----CCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDA----EDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-v~~~~~d~----~~l~~~~~~~D~i~~~~ 183 (290)
++.+||=.|+|. |..+..+++..+..++++++.++.....+++... .. +.....+. ..+ .....+|+++...
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~~ 243 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA-THTVNSAKGDAIEQVLEL-TDGRGVDVVIEAV 243 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-CceeccccccHHHHHHHH-hCCCCCCEEEECC
Confidence 677877788764 6666777777643788999998887777765321 11 11111111 011 1234599988532
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. ...+..+.+.|+++|.++...
T Consensus 244 -----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 244 -----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred -----CC-HHHHHHHHHhccCCcEEEEec
Confidence 22 235788889999999998754
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 290 | ||||
| 3dlc_A | 219 | Crystal Structure Of A Putative S-Adenosyl-L-Methio | 4e-08 | ||
| 1vlm_A | 219 | Crystal Structure Of Sam-Dependent Methyltransferas | 4e-05 | ||
| 3l8d_A | 242 | Crystal Structure Of Methyltransferase From Bacillu | 3e-04 |
| >pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219 | Back alignment and structure |
|
| >pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase, Possible Histamine N-Methyltransferase (Tm1293) From Thermotoga Maritima At 2.20 A Resolution Length = 219 | Back alignment and structure |
|
| >pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 8e-38
Identities = 43/217 (19%), Positives = 83/217 (38%), Gaps = 24/217 (11%)
Query: 67 IQHKKEAFW--FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFT 124
+ K+ F + + + + P + + ++ + ++ +D+G G G
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIY--PIIAENIINRFGITAGT--CIDIGSGPGAL 57
Query: 125 TLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKE-CKIVEGDAEDLPFPTDYADRYV 180
++ + K D + LD S H A + L + +IV+GD ++P +YAD V
Sbjct: 58 SIALAKQSDFS-IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIV 116
Query: 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW------------ 228
S GS+ +W D RE YR+LK GGK I G A++
Sbjct: 117 SRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRK 176
Query: 229 -MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRR 264
+ E + + G ++ ++ + +
Sbjct: 177 NISQENVERFQNVLDEIGISSYEIILGDEGFWIIISK 213
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-36
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 13/160 (8%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDA 166
N V+DV G G V K V D + L A+ ++ + V+GDA
Sbjct: 37 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA 94
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
E +PF + + ++P+P + EAYRVLK GG+ ++ P F +
Sbjct: 95 EQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN 154
Query: 227 VWML--------FPKEEEYIEWFQKAGFKDVQLKRIGPKW 258
K+ ++++ ++AGF+ +L +
Sbjct: 155 YVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTF 194
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 6e-36
Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 20/193 (10%)
Query: 68 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLG 127
H + + Y+ + A++ R V++G GTG +
Sbjct: 8 HHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGR---GVEIGVGTGRFAV- 63
Query: 128 IVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187
K ++ S A+++ +++G AE+LP + D + +I +
Sbjct: 64 -----PLKIKIGVEPSERMAEIARKRG----VFVLKGTAENLPLKDESFDFALMVTTICF 114
Query: 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW-------MLFPKEEEYIEW 240
DP+R ++EAYR+LK GG + +F Y + F EE ++
Sbjct: 115 VDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDL 174
Query: 241 FQKAGFKDVQLKR 253
+KAGF++ ++ +
Sbjct: 175 MRKAGFEEFKVVQ 187
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-34
Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 7/205 (3%)
Query: 68 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLG 127
+ A + + ++ + + V+DVG G G+ T
Sbjct: 11 NWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYK 70
Query: 128 IVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187
+ + +D S + K K++ + ++GD LPF + + ++ S+E+
Sbjct: 71 LSRTG--YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128
Query: 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTF-----WLSRYFADVWMLFPKEEEYIEWFQ 242
+P R + E RVLK G ACI + Y DV E+ + +
Sbjct: 129 TEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVK 188
Query: 243 KAGFKDVQLKRIGPKWYRGVRRHGL 267
+ GFK V + + L
Sbjct: 189 EQGFKVVDGIGVYKRGVNEKMLGQL 213
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 8e-33
Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 18/179 (10%)
Query: 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150
E + V++ G G G T+ + K+ +T +D SP L KA
Sbjct: 19 SEQAETLEKLLHHDTVYP-PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKA 77
Query: 151 KQK---EPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
++ +K K ++ + LPF D +E+ P+ ++ +VLK GG
Sbjct: 78 RENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGT 137
Query: 208 ACIIGPVYPTFW--------------LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
+I + + + L R A + + Q++GF+ ++++
Sbjct: 138 ITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVE 196
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 6e-32
Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDA 166
V+D+G G G T L +V + +D + + A + ++ + +G A
Sbjct: 21 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 78
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
E LPFP D D + ++ D ++ +RE RVLK G+ ++ P + F +
Sbjct: 79 ESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN 138
Query: 227 VWML--------FPKEEEYIEWFQKAGFKDVQLKR 253
E+ F +++
Sbjct: 139 HLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 173
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-27
Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 14/180 (7%)
Query: 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143
Y + + + +L + ++ D+G GTG ++ + V ++ S
Sbjct: 12 YSQT-RVPDI--RIVNAIINLLNL-PKGSVIADIGAGTGGYSVALANQ--GLFVYAVEPS 65
Query: 144 PHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK 203
+A ++ G AE+L P D +S +I ++ ++ +E R+++
Sbjct: 66 IVMRQQAVVHPQVE---WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR 122
Query: 204 LGGKACII--GPVYPTFWLSRYFADVW---MLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258
G + + WL YF +W + F +E I Q+ + V+
Sbjct: 123 DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPH 182
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-26
Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECKIVEGD 165
M V+DVG G GF + K V K V +D + A +K LK ++++ +
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSE 96
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
+P P + D A + +P + + E RV K II
Sbjct: 97 ENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPE 156
Query: 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRH 265
+V+ E E + AG + ++ +G +
Sbjct: 157 EVY----SEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMI 192
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-26
Identities = 29/185 (15%), Positives = 65/185 (35%), Gaps = 30/185 (16%)
Query: 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAK 149
+ + + + + + +VD G G G+ L ++ + T +D LA+
Sbjct: 7 DDYVSFLVNTVWKI----TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE 62
Query: 150 AKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
A++ L +EGDA ++ D D + + + P+ +++ +K GGK
Sbjct: 63 ARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGK 121
Query: 208 ACIIGPVYPTFWLSRYF-----------ADVWMLFPKEEEYI-----------EWFQKAG 245
P + + S + LF + + + + G
Sbjct: 122 IICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELG 181
Query: 246 FKDVQ 250
K+++
Sbjct: 182 VKNIE 186
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 1e-25
Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 13/151 (8%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED 168
+ ++VD G G GF +++ + +D + L + K+K V ++
Sbjct: 16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK-----FDSVITLSDP 68
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
P + D + A S D Q I E R+LK G+ II
Sbjct: 69 KEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTG----IGPPL 124
Query: 229 MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259
+ E++Y+ WF + F + P +
Sbjct: 125 SIRMDEKDYMGWF--SNFVVEKRFNPTPYHF 153
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 2e-25
Identities = 45/212 (21%), Positives = 76/212 (35%), Gaps = 33/212 (15%)
Query: 70 KKEAFWFYRFLSIVYDHVIN---PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTL 126
E + +S YD P +D ++ A + N ++D+G GTG +
Sbjct: 3 LSEIKRKFDAVSGKYDEQRRKFIPCF--DDFYGVSVSIASVDTENPDILDLGAGTGLLSA 60
Query: 127 GIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185
+++ T++D S L AK + + K +E D F Y D VSA SI
Sbjct: 61 FLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKY-DMVVSALSI 119
Query: 186 EYWPDPQRG--IREAYRVLKLGGKACI----------IGPVYPTFW-------------- 219
+ D + + +Y +LK G I + T W
Sbjct: 120 HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEI 179
Query: 220 LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251
+ Y + + + W ++AGF+DV
Sbjct: 180 AAGYERSKLDKDIEMNQQLNWLKEAGFRDVSC 211
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 1e-24
Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 10/174 (5%)
Query: 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE 158
L +L N N V+D+G G G + I + A + +D + + A ++
Sbjct: 45 KKILSDIEL-NENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNN 102
Query: 159 -CKIVEGDAEDLPFPTDYADRYVSAGSIEY--WPDPQRGIREAYRVLKLGGKA-----CI 210
D FP + D S +I + + ++ Y+ LK G C
Sbjct: 103 KIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162
Query: 211 IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRR 264
Y EEY + FK+V K + W + +
Sbjct: 163 TEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLSDYWNQLLEV 216
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 1e-24
Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 39/188 (20%)
Query: 102 LEPADLSN--RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK------ 153
L P + + ++D+G G+G +L + +VT +D + + A+
Sbjct: 20 LYPIIHNYLQEDDEILDIGCGSGKISLELASKG--YSVTGIDINSEAIRLAETAARSPGL 77
Query: 154 --EPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ---RGIREAYRVLKLGGKA 208
+ + + +A L F D V + PDP+ R I+E +RVLK G
Sbjct: 78 NQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYL 137
Query: 209 CII---GPVYPTFWLSRYF---------------------ADVWMLFPKEEEYIEWFQKA 244
++ + + RY + E+E +
Sbjct: 138 YLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDC 197
Query: 245 GFKDVQLK 252
F+ +
Sbjct: 198 RFEIDYFR 205
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 99.8 bits (248), Expect = 3e-24
Identities = 44/238 (18%), Positives = 77/238 (32%), Gaps = 34/238 (14%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-D 133
+ L+ + D V+ + L V+D+G GTG K V +
Sbjct: 53 SHRKILADIADEVLEKFY----GCGSTLPADGSLE-GATVLDLGCGTGRDVYLASKLVGE 107
Query: 134 AKNVTILDQSPHQLAKAKQKEPLKECKI-----------VEGDAEDL------PFPTDYA 176
V +D +QL A++ K ++G E+L P
Sbjct: 108 HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSV 167
Query: 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML------ 230
D +S + +E +RVL+ GG+ D +
Sbjct: 168 DIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGG 227
Query: 231 FPKEEEYIEWFQKAGFKDVQLKRIGP-----KWYRGVRRHGLIMGCSVTGVKPASGDS 283
E++ +AGF+DV+L +GP R + C+ K A+ ++
Sbjct: 228 ALYLEDFRRLVAEAGFRDVRLVSVGPVDVSDPQLRKLVPDVQFYSCTFRCFKVATLEA 285
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 4e-24
Identities = 42/213 (19%), Positives = 69/213 (32%), Gaps = 27/213 (12%)
Query: 78 RFLSIVYDHVINPGHWTEDMRDDALEPADLS-----------NRNMLVVDVGGGTGFTTL 126
+ ++ ++ G+W + D +++ A V+DVG G G +
Sbjct: 18 DPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAV 77
Query: 127 GIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKE-CKIVEGDAEDLPFPTDYADRYVSA 182
+ D VT + S Q+ +A L DA DLPF D +
Sbjct: 78 RLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWAL 136
Query: 183 GSIEYWPDPQRGIREAYRVLKLGGKA-----CIIGPVYPTF-WLSRYFADVWML--FPKE 234
S+ + PD R +RE RVL+ GG ++ PV F +
Sbjct: 137 ESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGI 196
Query: 235 EEYIEWFQKAGFKDVQLKRIGP---KWYRGVRR 264
+EY ++A I
Sbjct: 197 DEYESDVRQAELVVTSTVDISAQARPSLVKTAE 229
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 5e-24
Identities = 39/183 (21%), Positives = 73/183 (39%), Gaps = 10/183 (5%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
+ + F+ + + G + + A+ + + + D+G GTG TL + +V
Sbjct: 11 FDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG 70
Query: 135 KNVTILDQSPHQLAKAKQ---KEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
+ +T +D P + + K + K + G ++LPF + D S G+I Y
Sbjct: 71 Q-ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI-YNIG 128
Query: 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWM----LFPKEEEYIEWFQKAGF 246
+RG+ E + LK GG + + T D WM I+ ++AG+
Sbjct: 129 FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGY 188
Query: 247 KDV 249
Sbjct: 189 TPT 191
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 8e-24
Identities = 39/201 (19%), Positives = 63/201 (31%), Gaps = 24/201 (11%)
Query: 84 YD----HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTI 139
YD H A+ P +++G GTG L ++
Sbjct: 12 YDRLRAHPPEVAGQIATAMASAVHPKGEEPV---FLELGVGTGRIALPLIAR--GYRYIA 66
Query: 140 LDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIRE 197
LD L +QK + K+ V+ DA +P P + + PD + + E
Sbjct: 67 LDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAE 126
Query: 198 AYRVLKLGGKACII---GPVYPTFWLSRYFADVW----------MLFPKEEEYIEWFQKA 244
A RVLK GG P + L + + + +E E ++
Sbjct: 127 AIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186
Query: 245 GFKDVQLKRIGPKWYRGVRRH 265
G K + + R R
Sbjct: 187 GLKPRTREVARWREERTPREA 207
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 1e-23
Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 25/166 (15%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL 169
V+D+GGGTG +L + + V ++D S L A++K +VE AEDL
Sbjct: 54 NPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREK---GVKNVVEAKAEDL 108
Query: 170 PFPTDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
PFP+ + ++ G + Y + + E RVL G + TF D W
Sbjct: 109 PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAW 168
Query: 229 MLFPK--------EEEYIEWF-----------QKAGFKDVQLKRIG 255
+ + F GF+ V ++ IG
Sbjct: 169 DQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIRGIG 214
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 2e-23
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 12/168 (7%)
Query: 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
PG ++ AL D L+ D+G GTG T+ + HV + VT LD +
Sbjct: 28 PGSPEVTLK--ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFLSGFIDI 84
Query: 150 AKQ---KEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLG 205
+ + L+ + G +DLPF + D S G+I Y +RG+ E + LK G
Sbjct: 85 FNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI-YNIGFERGLNEWRKYLKKG 143
Query: 206 GKACIIGPVYPTFWLSRYFADVWM----LFPKEEEYIEWFQKAGFKDV 249
G + + T D WM + KAG+ V
Sbjct: 144 GYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPV 191
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 3e-23
Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 18/178 (10%)
Query: 84 YDHV--INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILD 141
Y+ G + + AL+ L +++VG GTG+ + + ++
Sbjct: 10 YEAWYGTPLGAYVIAEEERALKG--LLPPGESLLEVGAGTGYWL----RRLPYPQKVGVE 63
Query: 142 QSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRV 201
S LA +++ P E V E LPFP + D + ++E+ D +R + EA RV
Sbjct: 64 PSEAMLAVGRRRAP--EATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRV 121
Query: 202 LKLGGKACI--------IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251
L+ GG + +Y F E+ + +
Sbjct: 122 LRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLGPPEAEGEAV 179
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 6e-23
Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 14/185 (7%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
E + + L R +D+G G G +V+ ++ L+ +P Q + +
Sbjct: 65 RTDEWLASELAMTGVL-QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNE 122
Query: 152 Q---KEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
+ + L + + G ++P + D S + + PD + +E RVLK G
Sbjct: 123 EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV 182
Query: 208 ACIIGPVY---PTFWLSRYFADVWML--FPKEEEYIEWFQKAGFKDVQLKRIG---PKWY 259
I P+ + D L Y ++ G ++ Y
Sbjct: 183 MAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHY 242
Query: 260 RGVRR 264
V+
Sbjct: 243 SKVKA 247
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 7e-23
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 21/176 (11%)
Query: 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--KEPL 156
L+ + SN + V+D G G L I ++ S QL KA+ +E
Sbjct: 12 YRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN 70
Query: 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYW--PDPQRGIREAYRVLKLGGKACIIGPV 214
+ I +GD LPF + S G+I + D + I E RVLK GG ACI
Sbjct: 71 FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130
Query: 215 YP-------------TFWLSRYFADVWMLFPKEEEYIEWFQKAGF---KDVQLKRI 254
F V + EE ++F+ +D ++RI
Sbjct: 131 TKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVERI 186
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 1e-22
Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 20/161 (12%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
V++ G GTG T ++ + V ++ S AK+K P KE I EGD PT
Sbjct: 49 VLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSFEVPT 105
Query: 174 DYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACIIGPVYPT---------FWLSR 222
D VS + + D ++ I + ++L GGK ++ R
Sbjct: 106 SI-DTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQR 164
Query: 223 YFADVW-----MLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258
F + + + F+ GF + W
Sbjct: 165 GFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVW 205
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 91.5 bits (227), Expect = 5e-22
Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 31/198 (15%)
Query: 84 YDHV-INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142
Y + + L+ V+D+G G G+ + +H AK V +D
Sbjct: 17 YSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDL 75
Query: 143 SPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVL 202
S L +AK+K + ED+ D + +S+ ++ Y ++ Y L
Sbjct: 76 SERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINL 135
Query: 203 KLGGKACII--GPVYPT----------------FWLSRYF-----------ADVWMLFPK 233
K G PV+ + + RYF DV
Sbjct: 136 KSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRT 195
Query: 234 EEEYIEWFQKAGFKDVQL 251
YI+ K GF+ +
Sbjct: 196 VTTYIQTLLKNGFQINSV 213
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 8e-22
Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 18/197 (9%)
Query: 76 FYRFLSIVYDHVINP-GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
+YR D E + ++ + V+D+ G G + + +
Sbjct: 6 YYRVFPTYTDINSQEYRSRIETLEPLLMK---YMKKRGKVLDLACGVGGFSFLLEDYG-- 60
Query: 135 KNVTILDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAGSIEYWP--D 190
V +D S + KA++ +E + + GDA L F D + SI ++ +
Sbjct: 61 FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLE 120
Query: 191 PQRGIREAYRVLKLGGKACI-------IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243
+ +E RVLK GK + + P + + + P +EE +
Sbjct: 121 LNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTV-VIE 179
Query: 244 AGFKDVQLKRIGPKWYR 260
+ + W +
Sbjct: 180 FKSEQDSFRVRFNVWGK 196
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 2e-20
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 19/151 (12%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
++D+G GTG T I + V D + + KA+Q P DA +
Sbjct: 61 ILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNYP--HLHFDVADARNFRVDK 116
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACIIGPVYPTFWLSRYFADVW---- 228
D S + + +P+ I ++ LK GG+ G ++ +
Sbjct: 117 PL-DAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLG 175
Query: 229 ---------MLFPKEEEYIEWFQKAGFKDVQ 250
FP EY+ +K GF
Sbjct: 176 IHNPQALNPWYFPSIGEYVNILEKQGFDVTY 206
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 4e-20
Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 38/188 (20%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
+VD+G G G+ +H A V LD S LA+A+ P D + L P
Sbjct: 47 IVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQ 105
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII-----------------GPVYP 216
D D S+ ++ Y D R R ++ L GG
Sbjct: 106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRR 165
Query: 217 TFWLSRYFADVWMLFPKE-----------EEYIEWFQKAGFKDVQL---------KRIGP 256
T+ + RY + + ++GF + P
Sbjct: 166 TWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEFCPTDAQITARP 225
Query: 257 KWYRGVRR 264
+ + R
Sbjct: 226 ELAEELDR 233
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 5e-20
Identities = 40/218 (18%), Positives = 68/218 (31%), Gaps = 26/218 (11%)
Query: 68 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLG 127
+ +YR + YD + + ALE N V+++ GTG+ T
Sbjct: 6 GLIESQLSYYRARASEYDAT--FVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRH 63
Query: 128 IVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187
+ A VT LD S +A+A + L + + D D + D A + +
Sbjct: 64 LSGL--ADRVTALDGSAEMIAEAGRH-GLDNVEFRQQDLFDWTPDRQW-DAVFFAHWLAH 119
Query: 188 WPDPQRG--IREAYRVLKLGGKACIIGPVY------------PTFWLSRYFAD-----VW 228
PD + + GG + P + R D +
Sbjct: 120 VPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIV 179
Query: 229 MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHG 266
+F E E G+ + + P + R G
Sbjct: 180 KVFRSPAELTERLTALGW-SCSVDEVHPGFLYATCRPG 216
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 84.3 bits (208), Expect = 1e-19
Identities = 25/162 (15%), Positives = 44/162 (27%), Gaps = 10/162 (6%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGD 165
+D G G G T ++ + + V ++D + L +AK E +
Sbjct: 78 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG 136
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223
+D D D I + D +R L+ G I + +
Sbjct: 137 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD 196
Query: 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG--PKWYRGVR 263
+ AG + +R P V
Sbjct: 197 VDSSVC--RDLDVVRRIICSAGLSLLAEERQENLPDEIYHVY 236
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 3e-19
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 5/149 (3%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDA 166
+ +D G G G T ++ + +L+ H L +AK++ + K +
Sbjct: 91 GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASM 149
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYF 224
E P + D V + Y D + + + L G
Sbjct: 150 ETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDK 209
Query: 225 ADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253
D + + Y F ++G + V+
Sbjct: 210 EDSSLTRS-DIHYKRLFNESGVRVVKEAF 237
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 1e-18
Identities = 36/200 (18%), Positives = 54/200 (27%), Gaps = 42/200 (21%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKE-CKIVEG 164
+V V G L + + +D P L A + L +
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ 177
Query: 165 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGI---REAYRVLKLGGKACIIGPVYPTFW-- 219
DA L + D S G Y PD R R ++ LK GG P
Sbjct: 178 DAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSP 236
Query: 220 --------------------LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259
+R W + ++AGF D++ +
Sbjct: 237 DSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLR--------F 288
Query: 260 RGVRRHGLIMGCSVTGVKPA 279
R + +V KPA
Sbjct: 289 EDDRAR---LFPTVIARKPA 305
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 9e-18
Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 21/179 (11%)
Query: 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
GH+ + + L+ + +L D+G +G I ++ V+ ++ P +
Sbjct: 14 SGHYYNAVNPNLLKHIKKEWKEVL--DIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQ 69
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-- 207
AK+K L + + + D+P+ + D + +E+ DP I + +K G
Sbjct: 70 AKEK--LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVIL 127
Query: 208 ------------ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
A ++ + + F E + F KAG+ ++ R+
Sbjct: 128 ASIPNVSHISVLAPLLAGNWTYTEYGLLDKT-HIRFFTFNEMLRMFLKAGYSISKVDRV 185
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-17
Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 24/186 (12%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
+++ ALE + L+ D+GG TG V++ VTI+D P QL +
Sbjct: 162 FYSDQSFGKALEIVFSHHPKRLL-DIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMR 219
Query: 152 QKEPLKE----CKIVEGD--AEDLPFPTDYADRYVSAGSIEYWPDPQ-RGI-REAYRVLK 203
++ + D+PFPT D + ++ + + + I + +
Sbjct: 220 KQTAGLSGSERIHGHGANLLDRDVPFPTG-FDAVWMSQFLDCFSEEEVISILTRVAQSIG 278
Query: 204 LGGKACIIGPVY------PTFWLSRYFA-DVWML------FPKEEEYIEWFQKAGFKDVQ 250
K I+ ++ + + + ++ I + AG + +
Sbjct: 279 KDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEE 338
Query: 251 LKRIGP 256
++
Sbjct: 339 IQDNIG 344
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 6e-17
Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 34/197 (17%)
Query: 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE 158
LE A L ++ DVGGG G + ++KH + TIL+ P + + K
Sbjct: 180 QLLLEEAKLDGVKKMI-DVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG 237
Query: 159 ----CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-RGI-REAYRVLKLGGKACIIG 212
+ + D +P AD + + + + ++A+ ++ GG+ I+
Sbjct: 238 VADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295
Query: 213 PVYPT------FWLSRYFADVWMLFPK-----EEEYIEWFQKAGFKDVQLKRIGPKWYRG 261
V +LS Y M F + Y E + G+KDV + R
Sbjct: 296 MVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKYDHL--- 352
Query: 262 VRRHGLIMGCSVTGVKP 278
V VKP
Sbjct: 353 ----------LVQAVKP 359
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 8e-17
Identities = 31/204 (15%), Positives = 67/204 (32%), Gaps = 30/204 (14%)
Query: 72 EAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH 131
E+F + S + + + + + + + ++ +GGG G L I+
Sbjct: 17 ESFRRFLNHSTEHQCMQE---FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSK 73
Query: 132 VDAK------NVTILDQSPHQLAKAKQK----EPLKECKIV--EGDAEDL------PFPT 173
V A+ N +++ S Q+AK K+ L+ K + + +
Sbjct: 74 VQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL 133
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
D + Y D ++ + +L K II + W + + FP+
Sbjct: 134 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW-DKLWKKYGSRFPQ 192
Query: 234 E--------EEYIEWFQKAGFKDV 249
+ ++ + G K
Sbjct: 193 DDLCQYITSDDLTQMLDNLGLKYE 216
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 7e-15
Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 25/187 (13%)
Query: 91 GHWTEDMRDDALEPADLS----NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 146
H + R + A L + V+D+G G G+ + +D
Sbjct: 29 RHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTL 86
Query: 147 LAKAKQK--EPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKL 204
+ A+ + + +P DY D + ++ D + +L
Sbjct: 87 VDAARAAGAGEVHLASYAQLAEAKVPVGKDY-DLICANFALL-HQDIIELLSAMRTLLVP 144
Query: 205 GGKACI--IGPV------YPTFWLSRYFADVWML-------FPKEEEYIEWFQKAGFKDV 249
GG I + P Y W FA F ++ AG + V
Sbjct: 145 GGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204
Query: 250 QLKRIGP 256
L+
Sbjct: 205 SLQEPQH 211
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 7e-15
Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 19/150 (12%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
D+G G G +T + +T +D L KA + P + D
Sbjct: 37 GYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP--NTNFGKADLATWKPAQ 94
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP-------------VYPTFWL 220
D + ++ PD + + L+ GG + P
Sbjct: 95 KA-DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPW 153
Query: 221 SRYFADVWML---FPKEEEYIEWFQKAGFK 247
F+ + P +Y +
Sbjct: 154 KDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 1e-14
Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 29/169 (17%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQ-----KEPLKECKIV 162
L+VDVG G G TL + + + + + D S + A+ + K
Sbjct: 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFK 94
Query: 163 EGDAEDLPF------PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216
++D F D + +W D ++ R AY L+ G I G
Sbjct: 95 ISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEKFQRSAYANLRKDGTIAIWG---- 149
Query: 217 TFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRH 265
+FP E+ + + + + +GP W + R
Sbjct: 150 ---------YADPIFPDYPEFDDLMIEVPYGK---QGLGPYWEQPGRSR 186
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-14
Identities = 30/199 (15%), Positives = 60/199 (30%), Gaps = 33/199 (16%)
Query: 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEP 155
D E + V+D+ GG G +++ I D P A++
Sbjct: 169 DVVSELGVFARAR-TVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD 226
Query: 156 LKE-CKIVEGDA-EDLPFPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACII 211
L + E + + F AD + + Y+ + I A ++K GG I+
Sbjct: 227 LGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLIL 286
Query: 212 GPVYPTFWLSRYFA---DVWMLFPK-------EEEYIEWFQKAGFKDVQLKRIGPKWYRG 261
++ + + M+ + AG + R
Sbjct: 287 TMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE---------RS 337
Query: 262 VRRHGLIMGCSVTGVKPAS 280
+ R+ L + G + +
Sbjct: 338 IGRYTL-----LIGQRSSG 351
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 2e-14
Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 7/156 (4%)
Query: 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155
+ D L + + +++DVG GTG T + + L+ + + A+Q P
Sbjct: 27 EDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHP 84
Query: 156 LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY--WPDPQRGIREAYRVLKLGGKACIIGP 213
G DL ++ S+ + + + ++ GG +
Sbjct: 85 --SVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF 142
Query: 214 VYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249
P+ + +P E + + AGF+
Sbjct: 143 SGPSLEPMYHPVATAYRWP-LPELAQALETAGFQVT 177
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 3e-14
Identities = 37/186 (19%), Positives = 54/186 (29%), Gaps = 37/186 (19%)
Query: 65 RFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFT 124
R Q EAF Y W D +++V D G G
Sbjct: 27 RLFQEDPEAFLLYHRG-----FQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRL 81
Query: 125 TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGS 184
I V ++ LD ++ D +P + D V S
Sbjct: 82 ASSIRNPVHCFDLASLDP-----------------RVTVCDMAQVPLEDESVDVAVFCLS 124
Query: 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA 244
+ + + + EA RVLK GG + A+V F ++ K
Sbjct: 125 L-MGTNIRDFLEEANRVLKPGGLLKV--------------AEVSSRFEDVRTFLRAVTKL 169
Query: 245 GFKDVQ 250
GFK V
Sbjct: 170 GFKIVS 175
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 5e-14
Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKE-CKIVEGDA 166
++D+G G+G + T +D S A+AK++ + E + DA
Sbjct: 37 GTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 95
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
D G+ + LK GG I P + + A
Sbjct: 96 AGYVANEKC-DVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ 154
Query: 227 VWMLFPKEE-----EYIEWFQKAGFKDVQLKRIGPKWYRGVRRHG 266
+ + + F G+ V++ G R+
Sbjct: 155 ACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQ---EGWDRYE 196
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 1e-13
Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 17/189 (8%)
Query: 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML-----VVDVGGGTGFTTLGIVK 130
Y L+ YD + E ++ + ++ + V+D+ GTG TL + +
Sbjct: 4 LYTLLAEYYDTIYR--RRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE 61
Query: 131 HVDAKNVTILDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAG-SIEY 187
V LD L A++K + KI ++GD ++ F ++ D +I Y
Sbjct: 62 R--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF-DAVTMFFSTIMY 118
Query: 188 W--PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245
+ D ++ + LK GG F+ R VW EE+ + +
Sbjct: 119 FDEEDLRKLFSKVAEALKPGGVFITD--FPCWFYGGRDGPVVWNEQKGEEKLVIMDWREV 176
Query: 246 FKDVQLKRI 254
VQ R
Sbjct: 177 EPAVQKLRF 185
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 2e-13
Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 15/162 (9%)
Query: 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154
D+ +A ++ R ++D G G G + K +V D P + AKQ
Sbjct: 31 NDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF 88
Query: 155 PLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIREAYRVLKLGGKACI- 210
P E + V GD D VSAG++ + + + +R L G+A I
Sbjct: 89 P--EARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIG 146
Query: 211 ----IGPVYPTF--WLSRYFADVWMLFPKEEEYIEWFQKAGF 246
G V+ F R ++ F + + Q + F
Sbjct: 147 FGAGRGWVFGDFLEVAERVGLELENAFES-WDLKPFVQGSEF 187
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 2e-13
Identities = 27/163 (16%), Positives = 41/163 (25%), Gaps = 21/163 (12%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFP 172
V++ G G G D SP L A+ P + E + +LP
Sbjct: 52 VLEAGCGHGPDAARFGPQAAR--WAAYDFSPELLKLARANAP--HADVYEWNGKGELPAG 107
Query: 173 TDYA-DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231
VS P I + +GP + A V
Sbjct: 108 LGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDI 161
Query: 232 PKEEE---------YIEWFQKAGFKDVQLKRIGPKWYRGVRRH 265
E+ + +W + F +R VR
Sbjct: 162 VAEDHVSVLAHAPTWEDWQMRGEFMGKLARRADWDAEATVRGM 204
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-13
Identities = 28/183 (15%), Positives = 59/183 (32%), Gaps = 22/183 (12%)
Query: 94 TEDMRDDA---LEPADLSN-RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
+ M + A + + + + V+D+ G + + +H + +D L
Sbjct: 145 SPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDW-ASVLEV 203
Query: 150 AKQ---KEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLK 203
AK+ + + + G A ++ + D D + + ++ +R+ L
Sbjct: 204 AKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALA 262
Query: 204 LGGKACIIGPVYP---TFWLSRYFADVWMLFPK-------EEEYIEWFQKAGFKDVQLKR 253
+ GK + + + ML EY F AGF QL
Sbjct: 263 VEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS 322
Query: 254 IGP 256
+
Sbjct: 323 LPT 325
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 5e-13
Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 19/174 (10%)
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKE-CKIVEGDAE 167
+VD G G G + + + ++ V + S Q + + + + + +
Sbjct: 119 DTLVDAGCGRGGSMVMAHRRFGSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML 177
Query: 168 DLPFPTDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKA----CIIGPVY--PTFW 219
D PF ++ + E D E R LK+GG+ P Y P+ W
Sbjct: 178 DTPFDK---GAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKW 234
Query: 220 LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP---KWYRGVRRHGLIMG 270
+S+ A EY+ + + P ++ L+ G
Sbjct: 235 VSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVTG 288
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 39/183 (21%), Positives = 60/183 (32%), Gaps = 26/183 (14%)
Query: 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150
+ + E + +VDVGGGTG T I + T+ DQ P +
Sbjct: 174 ASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNL 232
Query: 151 KQKEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKL 204
E V GD + +P AD + + W D Q + +EA
Sbjct: 233 TGNE---NLNFVGGDMFKSIPS----ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGK 285
Query: 205 GGKACIIGPVYP------TFWLSRYFADVWMLFPK------EEEYIEWFQKAGFKDVQLK 252
GK II + D+ ML ++E+ + AGF ++
Sbjct: 286 DGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT 345
Query: 253 RIG 255
I
Sbjct: 346 PIS 348
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-12
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 18/181 (9%)
Query: 77 YRFLSIVYDHVINPGHWTEDMR--DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
Y + VYD ++ + E + + +EP + D+G GTG TL + H +
Sbjct: 4 YEQFAYVYDELMQDVPYPEWVAWVLEQVEP------GKRIADIGCGTGTATLLLADHYE- 56
Query: 135 KNVTILDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAGSIEY---WP 189
VT +D S L A++K + D +L P + S+ Y
Sbjct: 57 --VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEA 114
Query: 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249
D ++ A R+L GGK V+ + + F E+ WF G + +
Sbjct: 115 DVKQTFDSAARLLTDGGKLLF--DVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPL 172
Query: 250 Q 250
Sbjct: 173 S 173
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-12
Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 11/179 (6%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEP--ADLSNRNMLVVDVGGGTGFTTLGIVKHV 132
+ + VYD + + ++DV GTG K
Sbjct: 3 MYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF 62
Query: 133 DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP- 191
+ L+ S L A+++ L + + +GD D ++ S+ Y
Sbjct: 63 G--DTAGLELSEDMLTHARKR--LPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTE 118
Query: 192 --QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248
+ L+ GG + +P + + + ++ + + +
Sbjct: 119 ELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADV--VRRDGRTVARVSHSVREG 175
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 3e-12
Identities = 19/189 (10%), Positives = 43/189 (22%), Gaps = 33/189 (17%)
Query: 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE-- 154
R E + ++++G G G + + V + +VT +D +
Sbjct: 32 RLAIAEAWQV-KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQA 90
Query: 155 ----------PLKECKIVEGDAEDL-PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK 203
++DL P + DR V A S+ Y+ +
Sbjct: 91 WNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAA 150
Query: 204 LGGKACI---------------IGPVYPTFWLSRYFADVWM---LFPKEEEYIEWFQKAG 245
+ + + L + +
Sbjct: 151 VCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNT 210
Query: 246 FKDVQLKRI 254
+ +
Sbjct: 211 WTYTAGTIV 219
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 5e-12
Identities = 35/182 (19%), Positives = 53/182 (29%), Gaps = 18/182 (9%)
Query: 71 KEAFWFYR-FLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIV 129
E R FL + + + E D V+D+G G G+ T
Sbjct: 52 AEMMQARRAFLDAGHYQ-----PLRDAIVAQLRERLDDKATA--VLDIGCGEGYYTHAFA 104
Query: 130 KHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189
+ LD S + A ++ P + + LPF D + Y P
Sbjct: 105 DALPEITTFGLDVSKVAIKAAAKRYP--QVTFCVASSHRLPFSDTSMDAIIRI----YAP 158
Query: 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSRYFADVWMLFPKEEEYIEWFQKAGFKD 248
E RV+K GG P L + L E +E F +
Sbjct: 159 ---CKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAE 215
Query: 249 VQ 250
+
Sbjct: 216 LC 217
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 9e-12
Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 15/181 (8%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML----VVDVGGGTGFTTLGIVK 130
+ ++ +YD V +D +A + A L R+ ++DV GTG +
Sbjct: 13 DYSGEIAELYDLVHQ--GKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLAD 70
Query: 131 HVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
V L+ S LA A+++ P + + GD D ++ SI +
Sbjct: 71 S--FGTVEGLELSADMLAIARRRNP--DAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126
Query: 191 P---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247
+ + G + +P + Y A + + +
Sbjct: 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGT--VEAGGTTVTRVSHSSRE 184
Query: 248 D 248
Sbjct: 185 G 185
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-11
Identities = 23/192 (11%), Positives = 53/192 (27%), Gaps = 11/192 (5%)
Query: 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK 135
++ + V+ + + D L N + ++D G G T + +
Sbjct: 22 YWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF--P 79
Query: 136 NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----PFPTDYADRYVSAGSIEYW--- 188
V LD S L A ++ D ++ D + + +
Sbjct: 80 RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPV 139
Query: 189 PDPQRGIREAYRVLKLGGKACI--IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246
+ + +L G + +G F+ S + + + F
Sbjct: 140 EKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIF 199
Query: 247 KDVQLKRIGPKW 258
++ P +
Sbjct: 200 TAEDIELYFPDF 211
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 6e-11
Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 25/188 (13%)
Query: 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143
Y + + A P N+L ++G G T + +H ++T ++ S
Sbjct: 20 YAYNFDF-DVMHPFMVRAFTP-FFRPGNLL--ELGSFKGDFTSRLQEH--FNDITCVEAS 73
Query: 144 PHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAY-RVL 202
++ A+ + + ED P Y D V +E+ DP ++ L
Sbjct: 74 EEAISHAQGRLKDG-ITYIHSRFEDAQLPRRY-DNIVLTHVLEHIDDPVALLKRINDDWL 131
Query: 203 KLGGKACIIGP--------VYPTFWLSRYFADVWML--------FPKEEEYIEWFQKAGF 246
GG+ ++ P + + + + V + +AG
Sbjct: 132 AEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191
Query: 247 KDVQLKRI 254
+ I
Sbjct: 192 QVTYRSGI 199
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 9e-11
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 16/173 (9%)
Query: 77 YRFLSIVYDHVINPG----HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV 132
Y + +YD +I W++ + + +L + L D+ GTG T +
Sbjct: 3 YNKFAHIYDKLIRADVDYKKWSDFIIE-KCVENNLVFDDYL--DLACGTGNLTENLCPK- 58
Query: 133 DAKNVTILDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
KN +D S L++A+ K + K D +L + S Y D
Sbjct: 59 -FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIID 117
Query: 191 P---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240
++ + LK GG + + LS+ + + +E + W
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIF--DINSYYKLSQVLGNNDFNYDDDEVFYYW 168
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 1e-10
Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 14/177 (7%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
++ + Y +I T + R+ A + V+++ G G T +
Sbjct: 50 FYDEGAADTYRDLIQDADGTSEAREFATR---TGPVSGPVLELAAGMGRLTFPFLDL--G 104
Query: 135 KNVTILDQSPHQLAKAKQK------EPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188
VT L+ S LA +++ + C +V+GD + +S+GSI
Sbjct: 105 WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSINEL 164
Query: 189 PDPQRG--IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243
+ R L+ GGK ++ S L + +
Sbjct: 165 DEADRRGLYASVREHLEPGGKF-LLSLAMSEAAESEPLERKQELPGRSGRRYVLHVR 220
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 26/159 (16%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDA-EDLP 170
V DVGGG G L +++ +LD+ +A+ + P K+VEGD ++P
Sbjct: 188 VADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVARHRLDAPDVAGRWKVVEGDFLREVP 246
Query: 171 FPTDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGGKACIIGPVYP---TFWLSR 222
+AD +V + W D R + G+ +I V P S+
Sbjct: 247 ----HADVHVLKRILHNWGDEDSVRILTNCRRV---MPAHGRVLVIDAVVPEGNDAHQSK 299
Query: 223 YFADVWML-FPK-----EEEYIEWFQKAGFKDVQLKRIG 255
D ML E F AG + ++
Sbjct: 300 EM-DFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTS 337
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 1e-10
Identities = 37/159 (23%), Positives = 55/159 (34%), Gaps = 25/159 (15%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFP 172
+VDVGGGTG T I + + D+ P + V GD +P
Sbjct: 192 IVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSN---NLTYVGGDMFTSIPN- 246
Query: 173 TDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGGKACIIGPVYP------TFWLS 221
AD + + W D + +EA GK II V
Sbjct: 247 ---ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQI 303
Query: 222 RYFADVWMLFPK-----EEEYIEWFQKAGFKDVQLKRIG 255
+ DV M EEE+ + F +AGF+ ++ +
Sbjct: 304 KLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLT 342
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 1e-10
Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 23/189 (12%)
Query: 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK 135
+Y + E ++ V+D+G G G L + K +
Sbjct: 13 YYFLFEEKFRGS------RELVKARLRRYIPYFKGCRRVLDIGCGRGEF-LELCKEEGIE 65
Query: 136 NVTILDQSPHQLAKAKQKEPLKECKIVEGDAED--LPFPTDYADRYVSAGSIEYWPDPQ- 192
++ + D + + + K +V+ DA + P Y D + + +E+ +
Sbjct: 66 SIGV-DINEDMIKFCEGK-----FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERL 119
Query: 193 -RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV---WMLFPKEEEYIEWF-QKAGFK 247
+ Y +K I P + + F E +++ + GF+
Sbjct: 120 FELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPET--LKFILEYLGFR 177
Query: 248 DVQLKRIGP 256
DV+++
Sbjct: 178 DVKIEFFEE 186
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-10
Identities = 36/161 (22%), Positives = 53/161 (32%), Gaps = 24/161 (14%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDA-ED 168
VVDVGGG+G ++ + + T+LD + A ++ ++V G +
Sbjct: 173 VVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP 231
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223
LP A YV + + W D R EA GG +I V
Sbjct: 232 LP---AGAGGYVLSAVLHDWDDLSAVAILRRCAEA---AGSGGVVLVIEAVAGDEHAGTG 285
Query: 224 FADVWMLFPK------EEEYIEWFQKAGFKDVQLKRIGPKW 258
D+ ML E E +AG I
Sbjct: 286 M-DLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISYVS 325
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 5e-10
Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 24/159 (15%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDA-ED 168
VD+GGG G ++ T+L++ P +A++ + C+I+ GD E
Sbjct: 206 AVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET 264
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGGKACIIGPVYP-TFWLSR 222
+P D AD Y+ + W D R I A +K + +I + S
Sbjct: 265 IP---DGADVYLIKHVLHDWDDDDVVRILRRIATA---MKPDSRLLVIDNLIDERPAAST 318
Query: 223 YFADVWMLFPK------EEEYIEWFQKAGFKDVQLKRIG 255
F D+ +L E E+ +K+G + + G
Sbjct: 319 LFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCG 357
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 9e-10
Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 23/161 (14%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDA-ED 168
V+DVGGG G I T+++ +A+++ + EGD +
Sbjct: 186 VLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP 244
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQ-RGI-REAYRVLKLGGKACIIGPVYP-----TFWLS 221
LP AD + + + W D I R R L+ GG+ ++ + S
Sbjct: 245 LP---VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFS 301
Query: 222 RYFADVWMLFPK------EEEYIEWFQKAGFKDVQLKRIGP 256
D+ ML +E ++ AG + G
Sbjct: 302 TLL-DLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGS 341
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-09
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKECKIVEGDAEDLP 170
+D+G G G +L + + +V D++ +A ++ E L D +L
Sbjct: 36 TLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT 93
Query: 171 FPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACII---------GPVYPTFW 219
F Y D +S + + I R K GG I+ V F
Sbjct: 94 FDRQY-DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFA 152
Query: 220 -----LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258
L RY+ W + +Y E + D RI ++
Sbjct: 153 FKEGELRRYYEG-W----ERVKYNEDVGELHRTDANGNRIKLRF 191
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-09
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 16/138 (11%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
++++G G G+ ++ +V D SP A+A ++ + L
Sbjct: 47 ILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLG---RPVRTMLFHQLDAID 101
Query: 174 DYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACI---IGPVYPTFWLSRYFADVW 228
Y D + + + P + ++ +R LK GG G L+RY+
Sbjct: 102 AY-DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYN--- 157
Query: 229 MLFPKEEEYIEWFQKAGF 246
+P EE + +AG
Sbjct: 158 --YPSEEWLRARYAEAGT 173
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 5e-09
Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 23/173 (13%)
Query: 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE 158
+ D R+ VDVGGG+G T I++ + +LD+ L A+
Sbjct: 158 HEIPRLLDFRGRS--FVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL 214
Query: 159 ----CKIVEGDA-EDLPFPTDYADRYVSAGSIEYWPDPQ-RGI-REAYRVLKLGGKACII 211
+V GD +++P D Y+ + I + + + G+ +I
Sbjct: 215 AGERVSLVGGDMLQEVP---SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVI 271
Query: 212 GPVYP---TFWLSRYFADVWMLFP---KE---EEYIEWFQKAGFKDVQLKRIG 255
+S + DV + + EE ++ + GF ++ +
Sbjct: 272 ERTISASEPSPMSVLW-DVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLP 323
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 6e-09
Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 20/158 (12%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDA-ED 168
V+DVGGG G I + + T+L+ + A+ + +VEGD E
Sbjct: 187 VLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP 245
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQ-RGI-REAYRVLKLGGKACIIGPVYP---TFWLSRY 223
LP AD + + + WPD I L+ GG+ I +F
Sbjct: 246 LPRK---ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFT 302
Query: 224 FADVWMLFP---KE---EEYIEWFQKAGFKDVQLKRIG 255
D+ ML E++ AG +++++
Sbjct: 303 ELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLP 340
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 8e-09
Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKECKIVEGD 165
R V +GGG T ++ HV V +++ P +++ + ++ GD
Sbjct: 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGD 180
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
+ ++ V+A + +R R +R + + +Y T+ R
Sbjct: 181 ETVIDGL-EFDVLMVAALA----EPKRRVFRNIHRYVDTETRI-----IYRTYTGMRAI- 229
Query: 226 DVWMLFPKEEEYIEWFQK 243
+ P ++ I F++
Sbjct: 230 ---LYAPVSDDDITGFRR 244
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 1e-08
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 17/136 (12%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAE 167
++ +G G + + NVT +D S +A + + + + D
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGG-FPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR 99
Query: 168 DLPFPTDYAD---------------RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212
L FP+ D R S E + + E RVL GG+ +
Sbjct: 100 KLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159
Query: 213 PVYPTFWLSRYFADVW 228
P F Y +
Sbjct: 160 SAAPHFRTRHYAQAYY 175
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-08
Identities = 38/162 (23%), Positives = 57/162 (35%), Gaps = 25/162 (15%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFP 172
+VDVGGG G T I H D PH +++A Q V GD +++P
Sbjct: 205 LVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFP---GVTHVGGDMFKEVPS- 259
Query: 173 TDYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACIIGPVYP------TFWLSRYF 224
D + + W D ++ Y L GK ++ + P +
Sbjct: 260 ---GDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFH 316
Query: 225 ADVWMLFPK-------EEEYIEWFQKAGFKDVQLKRI-GPKW 258
D+ ML E E+ + AGF V+ I W
Sbjct: 317 VDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAW 358
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-08
Identities = 37/181 (20%), Positives = 57/181 (31%), Gaps = 25/181 (13%)
Query: 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150
+ T M LE + +VDVGGGTG IV + N D PH + A
Sbjct: 185 SNSTITM-KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDA 242
Query: 151 KQKEPLKECKIVEGD-AEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGK 207
+ + GD + +P D W D + ++ Y L GK
Sbjct: 243 PAFS---GVEHLGGDMFDGVPK----GDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGK 295
Query: 208 ACIIGPVYP------TFWLSRYFADVWMLFPK-------EEEYIEWFQKAGFKDVQLKRI 254
+ + P D ML E+E+ +GF+ ++
Sbjct: 296 VIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASC 355
Query: 255 G 255
Sbjct: 356 A 356
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-07
Identities = 32/135 (23%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 114 VVDVGGGTG-----FTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--KEPLKECKIVEGDA 166
++ + G G +LG VT +DQS LAKAKQ +E + V+ +
Sbjct: 33 ILCLAEGEGRNACFLASLGY-------EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL 85
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
D D + VS Q+ + Y+ LK GG + G +
Sbjct: 86 ADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPK 145
Query: 227 VWMLFPKEEEYIEWF 241
L PK E
Sbjct: 146 DLDLLPKLETLQSEL 160
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 2e-07
Identities = 34/220 (15%), Positives = 64/220 (29%), Gaps = 37/220 (16%)
Query: 67 IQHKKEAFWFYRFLSIVYDHVIN---PGHWTEDMRDDALE-PADLSNRNMLVVDVGGGTG 122
K F F ++ V+ +I PG+ ++ + V D+G G
Sbjct: 13 PIAKLGDFIFDENVAEVFPDMIQRSVPGY--SNIITAIGMLAERFVTADSNVYDLGCSRG 70
Query: 123 FTTLGIVKHVDAKNVTI--LDQSPHQLAKAKQK-EPLKECKIVE-GDAEDLPFPTDYADR 178
TL ++++ NV I +D S + + +Q VE + A
Sbjct: 71 AATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASM 130
Query: 179 YVSAGSIEYWPDPQRG--IREAYRVLKLGG------KACIIGPVYPTFWLSRYFADVW-- 228
+ ++++ P R + + Y L G K + +
Sbjct: 131 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRAN 190
Query: 229 -----------------MLFPKEEEYIEWFQKAGFKDVQL 251
M E + + GF V+L
Sbjct: 191 GYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVEL 230
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-07
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 20/151 (13%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
+ + V+ I L + V+DV GTG ++ +V+
Sbjct: 22 YADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE--G 79
Query: 135 KNVTILDQSPHQLAKAKQK--EPLKECKIVEGDAEDLPFPTDYADRYVSAG--------- 183
+VT +D S L A ++ KE + E+ + T D G
Sbjct: 80 FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGN 139
Query: 184 SIEYWPDPQRG-------IREAYRVLKLGGK 207
S + PD + ++ +++ GG
Sbjct: 140 SFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 4e-07
Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 31/189 (16%)
Query: 74 FWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD 133
F+ + + H + P V+D+G G G +L +
Sbjct: 91 FYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCK-------VLDLGCGQGRNSLYLSLL-- 141
Query: 134 AKNVTILDQSPHQLAKAKQ---KEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
+VT D + + +A + KE L D +Y D VS +
Sbjct: 142 GYDVTSWDHNENSIAFLNETKEKENLN-ISTALYDINAANIQENY-DFIVSTVVFMFLNR 199
Query: 191 PQRG--IREAYRVLKLGGKACII---------GPVYPTFW-----LSRYFADVWMLFPKE 234
+ I+ +GG I+ P+ +F L Y+ D W
Sbjct: 200 ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD-WEFLEYN 258
Query: 235 EEYIEWFQK 243
E E +
Sbjct: 259 ENMGELHKT 267
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 4e-07
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 22/163 (13%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK--------EPLKECKIVEGD 165
V+D+G G G ++K + +T +D S L +AK + K + +
Sbjct: 33 VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS 92
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACII-------GPVYP 216
D IE+ + + + + + I+ Y
Sbjct: 93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQT--VIVSTPNKEYNFHYG 150
Query: 217 TFWLSRYFADVWMLFPKEEEYIEWFQKAGFK---DVQLKRIGP 256
+ +E+ W K K V+ +IG
Sbjct: 151 NLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGE 193
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 5e-07
Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 24/190 (12%)
Query: 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 146
+I G T D+ D L + + + +D+G G G + + +D
Sbjct: 2 LILKGTKTVDLSKDELT-EIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKEN 60
Query: 147 LAKAKQKEPLKECK-------IVEGDAEDLPFPTDYADRYVSAGSIEY-WPDPQRG---- 194
L +K K K V AE LPF + SI + W
Sbjct: 61 LFDISKKIIKKPSKGGLSNVVFVIAAAESLPF---ELKNIADSISILFPWGTLLEYVIKP 117
Query: 195 ----IREAYRVLKLGGKACIIGPV----YPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246
+ + K + R + + E+Y +GF
Sbjct: 118 NRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGF 177
Query: 247 KDVQLKRIGP 256
+ +K +
Sbjct: 178 RIDDVKELDN 187
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 5e-07
Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 22/163 (13%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--------KIVEGD 165
V+D+G G G ++K + +T +D S L A+++ ++++G
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACII-------GPVYP 216
D IE+ + G R + + I+ +
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKI--VIVTTPNIEYNVKFA 150
Query: 217 TFWLSRYFADVWMLFPKEEEYIEWFQKAGFK---DVQLKRIGP 256
+ ++ W K + +VQ + IG
Sbjct: 151 NLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGE 193
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 7e-07
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQK----EPLKECKIVEGD 165
VVD G G T + V V D +A +K + +++
Sbjct: 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDG 82
Query: 166 AEDLPFPTD-------YADRYVSAG---SIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215
+++ D + Y+ +G + + +A +L GG ++ +Y
Sbjct: 83 HQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV--IY 140
Query: 216 P 216
Sbjct: 141 Y 141
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 29/155 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFP 172
+VDVGGG+G I+ D P + A PL + V GD +P
Sbjct: 213 LVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP---PLSGIEHVGGDMFASVP-- 266
Query: 173 TDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGGKACII------GPVYPTFWLS 221
D + W D + +A L GK I+ P
Sbjct: 267 --QGDAMILKAVCHNWSDEKCIEFLSNCHKA---LSPNGKVIIVEFILPEEPNTSEESKL 321
Query: 222 RYFADVWML-FPK-----EEEYIEWFQKAGFKDVQ 250
D M E++Y + + +GF Q
Sbjct: 322 VSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 356
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-06
Identities = 48/298 (16%), Positives = 81/298 (27%), Gaps = 97/298 (32%)
Query: 10 ETFTLIRGMTPKGSSFLASD----------FHGK---------HIPKLSLIAKPRTVQSI 50
LI G+ G +++A D K + P+ L + + I
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 51 KCSLSATSRPASQPRFIQHKKEAFWFYRFLS--------IVYDHVINPGHWTEDMRDDAL 102
+ ++ S +S + H +A R L +V +V N W +A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAW------NAF 262
Query: 103 EPADLS------NRNMLVVDVGGGTGFTTLGIVKHVD-----------AKNVTILDQS-P 144
+LS R V D T + + H K + Q P
Sbjct: 263 ---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 145 HQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-----RGIREAY 199
+ P + I+ AE + D + W I +
Sbjct: 320 RE---VLTTNPRR-LSII---AESIR---DGLAT------WDNWKHVNCDKLTTIIESSL 363
Query: 200 RVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE----EEYIE--WFQKAGFKDVQL 251
VL+ P + F + +FP + WF DV +
Sbjct: 364 NVLE---------PAE----YRKMFDRL-SVFPPSAHIPTILLSLIWFDVI-KSDVMV 406
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 9e-06
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 112 MLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK------EPLKECKIVEG 164
V++ G G+G TL +++ V A V +Q A++ +P ++V
Sbjct: 101 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 160
Query: 165 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213
D D P DR ++ P + R+L GG +
Sbjct: 161 DLADSELPDGSVDR-----AVLDMLAPWEVLDAVSRLLVAGGVLMVYVA 204
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 4e-05
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 114 VVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---------EPLKECKIVE 163
+VD G G+G ++ + + + +D SP LA+A + +K + +
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784
Query: 164 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLK 203
G + D IE+ + Q + +
Sbjct: 785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFH 826
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 8e-05
Identities = 24/149 (16%), Positives = 42/149 (28%), Gaps = 15/149 (10%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECKIVE 163
+ R V+D+G G G L + +D + + A+ + + +
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 120
Query: 164 GDAEDLPFPTDYADRYVSA-GSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTF 218
D+ +S+ S Y R R L+ GG I+
Sbjct: 121 QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGY-FIMTVPSRDV 179
Query: 219 WLSRYFADVWMLFPKEEEYIEWFQKAGFK 247
L RY + Y +K
Sbjct: 180 ILERYKQGRM----SNDFYKIELEKMEDV 204
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 1e-04
Identities = 29/147 (19%), Positives = 43/147 (29%), Gaps = 8/147 (5%)
Query: 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143
Y NP ED R L+P R++L D+G G TL I + LD
Sbjct: 24 YYGYRNPSC--EDGRLRVLKPEWFRGRDVL--DLGCNVGHLTLSIACKWGPSRMVGLDID 79
Query: 144 PHQLAKAK---QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD-PQRGIREAY 199
+ A+ + +E ++ E P + A
Sbjct: 80 SRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAA 139
Query: 200 RVLKLGGKACIIGPVYPTFWLSRYFAD 226
+ L G + P F Y D
Sbjct: 140 PQVPLDGADTSVFPNNVVFVTGNYVLD 166
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 29/144 (20%)
Query: 89 NPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA 148
P H + D + L+ + VVD G G T + +K V D L
Sbjct: 7 RPIHMSHDFLAEVLDDESI------VVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALG 58
Query: 149 KAKQK---EPLKECKIVEGDAEDLPFPTDYADRYVSA--GSIEYWPDP-----------Q 192
K Q+ ++ +++ E+L Y + A ++ Y P
Sbjct: 59 KTSQRLSDLGIENTELILDGHENLD---HYVREPIRAAIFNLGYLPSADKSVITKPHTTL 115
Query: 193 RGIREAYRVLKLGGKACIIGPVYP 216
I + L++GG+ I+ +Y
Sbjct: 116 EAIEKILDRLEVGGRLAIM--IYY 137
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236 | Back alignment and structure |
|---|
Score = 40.3 bits (93), Expect = 3e-04
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 10/112 (8%)
Query: 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--KEPLKECKIV 162
A S++ V++VG G + + I++ + + + + +
Sbjct: 55 AAASSKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPL 113
Query: 163 EGDAED-LPFPTD------YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
+G ED P D D Y + + A+R+LK GG
Sbjct: 114 KGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 165
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 6e-04
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDL 169
M +++VG G+G + I+ ++ K +T++++ L KA + V D+
Sbjct: 112 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 171
Query: 170 P--FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF 218
D I PDP +++ ++K G A P +
Sbjct: 172 ADFISDQMYDAV-----IADIPDPWNHVQKIASMMKPGSVATFYLPNFDQS 217
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 8e-04
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTI-LDQSPHQLAKAKQK-EPLKECKIVEGDAEDL-- 169
+V+ G G+G TL + V + + + A + + V +D+
Sbjct: 97 IVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213
+ D + P P+R + A + LK GG P
Sbjct: 157 GIEEENVDHVILDL-----PQPERVVEHAAKALKPGGFFVAYTP 195
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.9 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.89 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.89 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.89 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.88 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.88 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.88 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.88 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.88 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.88 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.87 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.87 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.87 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.87 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.87 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.87 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.87 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.86 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.86 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.86 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.86 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.85 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.85 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.85 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.85 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.85 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.85 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.85 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.85 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.85 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.84 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.84 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.84 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.84 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.84 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.84 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.84 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.83 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.83 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.83 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.83 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.83 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.83 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.82 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.82 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.82 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.82 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.82 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.82 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.81 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.81 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.81 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.81 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.81 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.81 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.81 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.81 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.81 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.8 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.8 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.8 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.79 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.79 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.79 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.79 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.79 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.79 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.79 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.78 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.78 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.78 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.78 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.77 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.77 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.77 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.77 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.77 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.77 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.77 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.76 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.76 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.76 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.76 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.76 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.76 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.75 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.75 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.74 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.74 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.74 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.73 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.73 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.73 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.73 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.73 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.72 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.72 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.71 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.71 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.7 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.7 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.7 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.7 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.7 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.69 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.69 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.69 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.69 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.69 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.69 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.69 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.67 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.67 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.66 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.66 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.66 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.66 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.65 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.65 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.65 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.64 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.64 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.64 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.64 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.63 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.63 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.63 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.63 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.63 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.63 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.62 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.62 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.61 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.61 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.61 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.61 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.61 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.61 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.61 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.61 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.6 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.6 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.6 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.59 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.59 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.59 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.59 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.59 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.58 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.57 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.57 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.57 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.57 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.56 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.56 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.55 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.55 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.54 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.53 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.52 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.52 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.52 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.52 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.52 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.51 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.51 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.51 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.51 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.51 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.5 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.5 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.5 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.5 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.49 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.49 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.49 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.49 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.48 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.48 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.48 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.47 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.46 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.46 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.46 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.46 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.45 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.45 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.45 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.45 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.45 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.44 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.44 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.43 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.43 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.43 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.43 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.42 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.42 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.42 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.42 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.41 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.41 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.41 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.4 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.4 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.4 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.4 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.4 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.38 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.38 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.37 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.37 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.37 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.36 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.35 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.35 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.35 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.34 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.34 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.34 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.34 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.33 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.32 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.32 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.32 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.31 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.31 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.3 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.3 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.29 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.29 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.28 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.27 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.26 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.23 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.23 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.22 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.22 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.22 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.22 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.21 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.21 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.2 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.2 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.18 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.17 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.14 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.13 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.11 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.09 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.09 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.05 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.04 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.03 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.02 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.01 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.0 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.0 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.97 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.96 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.95 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.93 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.88 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.87 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.87 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.85 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.82 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.8 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.79 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.74 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.74 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.7 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.67 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.63 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.58 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.57 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.56 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.53 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.53 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.53 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.49 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.46 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.46 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.39 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.36 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.34 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.3 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.3 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.18 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.17 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.09 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.08 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.06 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.04 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.96 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.76 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.71 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.71 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.68 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.63 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.47 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.3 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.2 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.18 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.0 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.0 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.93 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.75 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.71 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.07 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.05 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.03 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.98 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.86 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.85 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.82 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.74 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.62 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.56 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.31 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.25 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.25 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.22 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.15 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.05 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.04 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.03 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.01 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.89 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.85 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.79 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.59 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.51 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.48 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.3 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.24 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.2 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.97 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 93.94 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.92 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.9 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.9 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.76 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.75 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.72 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.69 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.51 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.5 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.42 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.26 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.21 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.19 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.15 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.13 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.02 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.94 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 92.87 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 92.81 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.73 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.73 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.59 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.48 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.23 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.17 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.06 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.02 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 91.75 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.66 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 91.64 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 91.58 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 91.46 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 91.41 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 91.24 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 91.14 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.99 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 90.91 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 90.7 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 90.32 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.19 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.1 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 90.09 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 90.07 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 89.78 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 89.68 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 89.57 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 89.55 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 89.41 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.34 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 89.1 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 89.06 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 88.36 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 87.96 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 87.57 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 87.24 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 86.86 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 86.62 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 86.37 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 86.17 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 85.84 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 85.54 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 85.51 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 85.43 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 84.73 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 84.62 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 83.27 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 83.15 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 83.13 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 82.89 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 82.61 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 82.44 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 82.16 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 82.16 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 81.95 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 81.87 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 81.4 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 80.4 |
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=169.05 Aligned_cols=145 Identities=22% Similarity=0.223 Sum_probs=119.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. .+++++.+|+.+++++ ++||+|++..+++|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC-TTCCEESCCSSSCCCC-SCCSEEEEESCGGGSC
T ss_pred CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC-CceEEEeCChhhcCCC-CCeEEEEECcchhcCC
Confidence 6789999999999999999998 6899999999999999999876 6899999999998877 7899999999999999
Q ss_pred CHHH--HHHHHHhccCCCCEEEEEccCCCchhHhhhh-------------H-HHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 190 DPQR--GIREAYRVLKLGGKACIIGPVYPTFWLSRYF-------------A-DVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 190 ~~~~--~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
++.. +++++.++|||||.+++.++........... . .....+++.+++.++|+++||+++.+..
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 200 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRL 200 (220)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeec
Confidence 9876 9999999999999999998665432211100 0 1112456899999999999998777765
Q ss_pred cCccc
Q 022929 254 IGPKW 258 (290)
Q Consensus 254 ~~~~~ 258 (290)
.+..|
T Consensus 201 ~~~~w 205 (220)
T 3hnr_A 201 NHFVW 205 (220)
T ss_dssp SSSEE
T ss_pred cceEE
Confidence 54333
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-22 Score=170.48 Aligned_cols=179 Identities=21% Similarity=0.234 Sum_probs=142.1
Q ss_pred HHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC
Q 022929 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
.++.+...|+......+........++..+....++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~ 90 (267)
T 3kkz_A 12 ELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNAR 90 (267)
T ss_dssp HHHHHHHHHHTSSCSSSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccCCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHH
Confidence 34455666666655555566666666776654457899999999999999999998 67799999999999999987732
Q ss_pred ----CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC----chhHhhhhHHH
Q 022929 156 ----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP----TFWLSRYFADV 227 (290)
Q Consensus 156 ----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~----~~~~~~~~~~~ 227 (290)
.++++++.+|+.++++++++||+|++..+++|+ ++..+++++.++|||||.+++.++... .......+...
T Consensus 91 ~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 169 (267)
T 3kkz_A 91 QSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDA 169 (267)
T ss_dssp HTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHH
T ss_pred HcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHh
Confidence 246999999999988888899999999999999 889999999999999999999876422 12222233233
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 228 WMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 228 ~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
+..+++.+++.++|+++||+++++..++.
T Consensus 170 ~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 198 (267)
T 3kkz_A 170 YPEIDTIPNQVAKIHKAGYLPVATFILPE 198 (267)
T ss_dssp CTTCEEHHHHHHHHHHTTEEEEEEEECCG
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEEECCH
Confidence 33456899999999999999999998874
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=169.37 Aligned_cols=176 Identities=19% Similarity=0.247 Sum_probs=138.5
Q ss_pred HhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----
Q 022929 80 LSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---- 155 (290)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---- 155 (290)
....|+......+........++..+....++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.++++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~ 94 (257)
T 3f4k_A 16 ICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANC 94 (257)
T ss_dssp HHHHHTTSSCSSSCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCccccCCCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCC
Confidence 344555544444556666667777664445788999999999999999999975 499999999999999987732
Q ss_pred CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC----chhHhhhhHHHhhcC
Q 022929 156 LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP----TFWLSRYFADVWMLF 231 (290)
Q Consensus 156 ~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~----~~~~~~~~~~~~~~~ 231 (290)
..+++++++|+.++++++++||+|++..+++|+ ++..+++++.++|+|||.+++.++... .......+......+
T Consensus 95 ~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (257)
T 3f4k_A 95 ADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEI 173 (257)
T ss_dssp TTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTC
T ss_pred CCceEEEECChhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCC
Confidence 234899999999999888899999999999999 789999999999999999999875421 112222333333446
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 232 PKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 232 ~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
.+.+++.++|+++||+++++..++..
T Consensus 174 ~~~~~~~~~l~~aGf~~v~~~~~~~~ 199 (257)
T 3f4k_A 174 SVIPTCIDKMERAGYTPTAHFILPEN 199 (257)
T ss_dssp CBHHHHHHHHHHTTEEEEEEEECCGG
T ss_pred CCHHHHHHHHHHCCCeEEEEEECChh
Confidence 78999999999999999999887753
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=169.94 Aligned_cols=163 Identities=19% Similarity=0.225 Sum_probs=134.2
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFP 172 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~ 172 (290)
.......+++.+... ++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++... .+++++.+|+.+++++
T Consensus 40 ~~~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~ 117 (266)
T 3ujc_A 40 GLEATKKILSDIELN-ENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFP 117 (266)
T ss_dssp HHHHHHHHTTTCCCC-TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCC
T ss_pred hHHHHHHHHHhcCCC-CCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCC
Confidence 345566777776553 78899999999999999999986 68999999999999999988654 5899999999998888
Q ss_pred CCCccEEEecCccccc--CCHHHHHHHHHhccCCCCEEEEEccCCCc-----hhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 173 TDYADRYVSAGSIEYW--PDPQRGIREAYRVLKLGGKACIIGPVYPT-----FWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
+++||+|++..+++|+ +++..+++++.++|||||.+++.++.... .............+++.+++.++++++|
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 197 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACN 197 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTT
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcC
Confidence 8899999999999999 77889999999999999999998765433 1112222222334679999999999999
Q ss_pred CcEEEEEEcCccc
Q 022929 246 FKDVQLKRIGPKW 258 (290)
Q Consensus 246 f~~v~~~~~~~~~ 258 (290)
|++++++.+..++
T Consensus 198 f~~~~~~~~~~~~ 210 (266)
T 3ujc_A 198 FKNVVSKDLSDYW 210 (266)
T ss_dssp CEEEEEEECHHHH
T ss_pred CeEEEEEeCCHHH
Confidence 9999999876544
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-22 Score=166.04 Aligned_cols=156 Identities=22% Similarity=0.229 Sum_probs=123.4
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCCCCcc
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~~~~D 177 (290)
..++..+....++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.++++... .+++++.+|+.+++++ ++||
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD 111 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYD 111 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCce
Confidence 3444444433478999999999999999999998889999999999999999988653 3799999999998877 7799
Q ss_pred EEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhH-hhhhHH-----------------------HhhcC
Q 022929 178 RYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFAD-----------------------VWMLF 231 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~~~-----------------------~~~~~ 231 (290)
+|++..+++|++++. .+++++.++|||||.+++.+...+.... ...... .....
T Consensus 112 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 999999999998766 5999999999999999998765443211 111000 11124
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 232 PKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 232 ~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
++.+++.++|+++||+.+++....
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~ 215 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKY 215 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cCHHHHHHHHHHcCCCceeeeeee
Confidence 678999999999999999886543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-22 Score=167.54 Aligned_cols=143 Identities=24% Similarity=0.316 Sum_probs=123.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+++++.+|+.++++++++||+|++..+++|++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 6789999999999999999998 67999999999999999998766789999999999888888999999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH-----hhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV-----WMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++..+++++.++|+|||.+++.+...........+... ....++.+++.++++++||++++...+
T Consensus 131 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 131 EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 99999999999999999999987655433222222222 123468999999999999999998865
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=171.29 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=112.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
+++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.|++.|+++.. ..+++++++|+.+++++ +||+|++.
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~ 146 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 146 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceee
Confidence 488999999999999999999875 46799999999999999998732 34689999999998864 49999999
Q ss_pred CcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCch-hHhhhhH------------------------HHhhcCCCHH
Q 022929 183 GSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFA------------------------DVWMLFPKEE 235 (290)
Q Consensus 183 ~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~~~~------------------------~~~~~~~~~~ 235 (290)
.+++|+++. ..++++++++|||||.+++.+...... .....+. ......++.+
T Consensus 147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~ 226 (261)
T 4gek_A 147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 226 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHH
T ss_pred eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHH
Confidence 999999765 368999999999999999987654321 1111100 0011235789
Q ss_pred HHHHHHHHCCCcEEEEE
Q 022929 236 EYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 236 ~~~~ll~~aGf~~v~~~ 252 (290)
++.++|+++||+.+++.
T Consensus 227 ~~~~~L~~AGF~~ve~~ 243 (261)
T 4gek_A 227 THKARLHKAGFEHSELW 243 (261)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 99999999999987763
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-22 Score=167.84 Aligned_cols=141 Identities=17% Similarity=0.116 Sum_probs=118.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... +++++++|+.++ .++++||+|++.++++|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~-~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD-GITYIHSRFEDA-QLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS-CEEEEESCGGGC-CCSSCEEEEEEESCGGGCS
T ss_pred CCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC-CeEEEEccHHHc-CcCCcccEEEEhhHHHhhc
Confidence 6778999999999999999987 45899999999999999988765 899999999876 4567899999999999999
Q ss_pred CHHHHHHHHH-hccCCCCEEEEEccCCCchhHhhh----------------hHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 190 DPQRGIREAY-RVLKLGGKACIIGPVYPTFWLSRY----------------FADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 190 ~~~~~l~~~~-~~L~pgG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
++..+++++. ++|||||.+++.++.......... ....+..+++.+++.++|+++||+++++.
T Consensus 118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 118 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 9999999999 999999999999876553321110 01112245799999999999999999987
Q ss_pred Ec
Q 022929 253 RI 254 (290)
Q Consensus 253 ~~ 254 (290)
.+
T Consensus 198 ~~ 199 (250)
T 2p7i_A 198 GI 199 (250)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=162.25 Aligned_cols=160 Identities=24% Similarity=0.365 Sum_probs=126.3
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL 169 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l 169 (290)
...+...+++..... ++ +|||||||+|.++..+++. ++.+++|+|+|+.+++.|+++.. ..+++++++|+.++
T Consensus 29 ~~~~~~~~~~~~~~~-~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 105 (219)
T 3dlc_A 29 YPIIAENIINRFGIT-AG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI 105 (219)
T ss_dssp HHHHHHHHHHHHCCC-EE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC
T ss_pred cHHHHHHHHHhcCCC-CC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC
Confidence 344555666655542 34 9999999999999999998 67899999999999999988732 24789999999998
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH----------H---HhhcCCCHHH
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA----------D---VWMLFPKEEE 236 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~----------~---~~~~~~~~~~ 236 (290)
++++++||+|++..+++|++++..+++++.++|+|||.+++.+............. . .....++.++
T Consensus 106 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
T 3dlc_A 106 PIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVER 185 (219)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHH
T ss_pred CCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHH
Confidence 88888999999999999999999999999999999999999876554321111100 0 1122347799
Q ss_pred HHHHHHHCCCcEEEEEEcCc
Q 022929 237 YIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 237 ~~~ll~~aGf~~v~~~~~~~ 256 (290)
+.++|+++||+++++.....
T Consensus 186 ~~~~l~~aGf~~v~~~~~~~ 205 (219)
T 3dlc_A 186 FQNVLDEIGISSYEIILGDE 205 (219)
T ss_dssp HHHHHHHHTCSSEEEEEETT
T ss_pred HHHHHHHcCCCeEEEEecCC
Confidence 99999999999998876543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=167.59 Aligned_cols=141 Identities=16% Similarity=0.071 Sum_probs=118.6
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC-
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP- 189 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~- 189 (290)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. +++++.+|+.++++++++||+|++..+++|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 117 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHP--SVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGP 117 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCT--TSEEECCCGGGGGGSCCCEEEEEEESSSTTCCT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCC--CCeEEeCcccccccCCCCeEEEEehhhHhcCCH
Confidence 689999999999999999998 6799999999999999998853 78999999998888888999999999999997
Q ss_pred -CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 190 -DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 190 -~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
+...+++++.++|+|||.+++..+.......... ......+++.+++.++|+++||+++++...+.
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYH-PVATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECC-SSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhc-hhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 7889999999999999999998765543110000 00012246899999999999999999998765
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=163.38 Aligned_cols=146 Identities=22% Similarity=0.198 Sum_probs=123.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++..++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 116 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTF 116 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCG
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhh
Confidence 77899999999999999999985 56899999999999999987742 247999999999988888899999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
+|++++..+++++.++|+|||.+++.+......... .....+++.+++.++++++||+++++..++..++
T Consensus 117 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 186 (219)
T 3dh0_A 117 HELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKG----PPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCF 186 (219)
T ss_dssp GGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS----CCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEE
T ss_pred hhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccC----CchhcccCHHHHHHHHHHCCCEEEEEEeeCCceE
Confidence 999999999999999999999999987654432111 1123356899999999999999999988765443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=165.80 Aligned_cols=161 Identities=23% Similarity=0.234 Sum_probs=129.2
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~ 171 (290)
.+...+++.+... ++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++.. ..+++++.+|+.++++
T Consensus 48 ~~~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (273)
T 3bus_A 48 RLTDEMIALLDVR-SGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF 125 (273)
T ss_dssp HHHHHHHHHSCCC-TTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred HHHHHHHHhcCCC-CCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC
Confidence 3445555555543 78999999999999999999876 6899999999999999987632 2468999999999998
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCc---hhHhhhhHH----H-hhcCCCHHHHHHHHHH
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT---FWLSRYFAD----V-WMLFPKEEEYIEWFQK 243 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~---~~~~~~~~~----~-~~~~~~~~~~~~ll~~ 243 (290)
++++||+|++..+++|++++..+++++.++|||||.+++.+..... ......... . ...+++.+++.+++++
T Consensus 126 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 205 (273)
T 3bus_A 126 EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQ 205 (273)
T ss_dssp CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHH
Confidence 8889999999999999999999999999999999999998754321 111111111 1 2345789999999999
Q ss_pred CCCcEEEEEEcCccc
Q 022929 244 AGFKDVQLKRIGPKW 258 (290)
Q Consensus 244 aGf~~v~~~~~~~~~ 258 (290)
+||++++++.++.++
T Consensus 206 aGf~~~~~~~~~~~~ 220 (273)
T 3bus_A 206 AELVVTSTVDISAQA 220 (273)
T ss_dssp TTCEEEEEEECHHHH
T ss_pred cCCeEEEEEECcHhH
Confidence 999999999886543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=164.89 Aligned_cols=144 Identities=22% Similarity=0.230 Sum_probs=118.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++.+|||||||+|.++..+++. +. +++|+|+|+.+++.++++....+++++.+|+.++++++++||+|++..+++|+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccccc
Confidence 6789999999999999999987 44 99999999999999999877668999999998888877889999999999999
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccCCCc-------h----------hHh----------hhhH-HHhhcCCCHHHHHHH
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPVYPT-------F----------WLS----------RYFA-DVWMLFPKEEEYIEW 240 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-------~----------~~~----------~~~~-~~~~~~~~~~~~~~l 240 (290)
+++..+++++.++|+|||.+++..+.... + ... .... .....+++.+++.++
T Consensus 121 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 200 (243)
T 3bkw_A 121 EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNA 200 (243)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHH
T ss_pred chHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHH
Confidence 99999999999999999999997643110 0 000 0000 011123589999999
Q ss_pred HHHCCCcEEEEEEcC
Q 022929 241 FQKAGFKDVQLKRIG 255 (290)
Q Consensus 241 l~~aGf~~v~~~~~~ 255 (290)
|+++||+++++....
T Consensus 201 l~~aGF~~~~~~~~~ 215 (243)
T 3bkw_A 201 LIRSGFAIEHVEEFC 215 (243)
T ss_dssp HHHTTCEEEEEEECC
T ss_pred HHHcCCEeeeeccCC
Confidence 999999999998764
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=167.36 Aligned_cols=169 Identities=18% Similarity=0.314 Sum_probs=127.2
Q ss_pred HHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC
Q 022929 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
+|+..+..|+..... ...+...+++.+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.
T Consensus 4 ~y~~~a~~y~~~~~~---~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~- 76 (261)
T 3ege_A 4 IYNSIGKQYSQTRVP---DIRIVNAIINLLNL-PKGSVIADIGAGTGGYSVALANQ--GLFVYAVEPSIVMRQQAVVHP- 76 (261)
T ss_dssp ---------CCSBCC---CHHHHHHHHHHHCC-CTTCEEEEETCTTSHHHHHHHTT--TCEEEEECSCHHHHHSSCCCT-
T ss_pred HHHHHHHHHhhcccc---cHHHHHHHHHHhCC-CCCCEEEEEcCcccHHHHHHHhC--CCEEEEEeCCHHHHHHHHhcc-
Confidence 566667777765433 23455566665554 37899999999999999999984 789999999999999888665
Q ss_pred CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCc---hhHhhh----hHHHh
Q 022929 156 LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT---FWLSRY----FADVW 228 (290)
Q Consensus 156 ~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~---~~~~~~----~~~~~ 228 (290)
+++++.+|+.++++++++||+|++..+++|++++..+++++.++|| ||.+++.+..... .+.... .....
T Consensus 77 --~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (261)
T 3ege_A 77 --QVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDAL 153 (261)
T ss_dssp --TEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHH
T ss_pred --CCEEEECchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhh
Confidence 8999999999999888899999999999999999999999999999 9988887664321 111111 22223
Q ss_pred hcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 229 MLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 229 ~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
..+++.+++. +|+++||+.+++..+.
T Consensus 154 ~~~~~~~~~~-~l~~aGF~~v~~~~~~ 179 (261)
T 3ege_A 154 RFLPLDEQIN-LLQENTKRRVEAIPFL 179 (261)
T ss_dssp TSCCHHHHHH-HHHHHHCSEEEEEECC
T ss_pred hhCCCHHHHH-HHHHcCCCceeEEEec
Confidence 4566788899 9999999999988874
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=161.35 Aligned_cols=179 Identities=21% Similarity=0.170 Sum_probs=129.3
Q ss_pred HHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh
Q 022929 74 FWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 153 (290)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 153 (290)
..+|+..+..|+..+.+.. ......+++.+....++.+|||||||+|.++..+++. +.+++|+|+|+.+++.+++.
T Consensus 12 ~~~~~~~a~~y~~~~~~~~--~~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~ 87 (218)
T 3ou2_A 12 LSYYRARASEYDATFVPYM--DSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRH 87 (218)
T ss_dssp HHHHHHHGGGHHHHHHHHH--TTTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhc
Confidence 3566666666655332211 1112233333332336789999999999999999998 67999999999999999983
Q ss_pred CCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHH-----
Q 022929 154 EPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD----- 226 (290)
Q Consensus 154 ~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~----- 226 (290)
. ..+++++.+|+.++ +++++||+|++..+++|++++ ..+++++.++|+|||.+++.+...+..........
T Consensus 88 ~-~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 165 (218)
T 3ou2_A 88 G-LDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVA 165 (218)
T ss_dssp C-CTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CE
T ss_pred C-CCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccc
Confidence 3 36799999999887 677889999999999999986 78999999999999999999876543222221110
Q ss_pred ------------HhhcCCCHHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 227 ------------VWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 227 ------------~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
....+++.+++.++|+++||++...+..+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~ 209 (218)
T 3ou2_A 166 VRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEVHPGFL 209 (218)
T ss_dssp EEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEEEETTEE
T ss_pred eeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeeeccccce
Confidence 01235689999999999999966665544433
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=166.95 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=128.8
Q ss_pred CcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCC
Q 022929 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDA 166 (290)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~ 166 (290)
.+........++..+.. .++.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|+++.. ..+++++.+|+
T Consensus 18 ~~~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~ 95 (256)
T 1nkv_A 18 NPFTEEKYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 95 (256)
T ss_dssp SSCCHHHHHHHHHHTCC-CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CCCCHHHHHHHHHhcCC-CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh
Confidence 34556666677766654 378999999999999999999986 6799999999999999987642 24799999999
Q ss_pred CCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH-----HHhhcCCCHHHHHHHH
Q 022929 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA-----DVWMLFPKEEEYIEWF 241 (290)
Q Consensus 167 ~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ll 241 (290)
.++++ +++||+|++..+++|++++..+++++.++|||||.+++.++..........+. .....+++.+++.++|
T Consensus 96 ~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (256)
T 1nkv_A 96 AGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAF 174 (256)
T ss_dssp TTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHH
T ss_pred HhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHH
Confidence 98887 67899999999999999999999999999999999999875432211111111 1122467899999999
Q ss_pred HHCCCcEEEEEEcC
Q 022929 242 QKAGFKDVQLKRIG 255 (290)
Q Consensus 242 ~~aGf~~v~~~~~~ 255 (290)
+++||+++++...+
T Consensus 175 ~~aGf~~~~~~~~~ 188 (256)
T 1nkv_A 175 DDLGYDVVEMVLAD 188 (256)
T ss_dssp HTTTBCCCEEEECC
T ss_pred HHCCCeeEEEEeCC
Confidence 99999998876644
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=160.80 Aligned_cols=171 Identities=18% Similarity=0.181 Sum_probs=133.3
Q ss_pred HHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh
Q 022929 72 EAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151 (290)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 151 (290)
....+|+..+..|...... ......++..+. ++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++
T Consensus 12 ~~~~~~~~~~~~y~~~~~~----~~~~~~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 82 (211)
T 3e23_A 12 DTLRFYRGNATAYAERQPR----SATLTKFLGELP---AGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEAS 82 (211)
T ss_dssp HHHHHHHHSHHHHTTCCCC----CHHHHHHHTTSC---TTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccch----hHHHHHHHHhcC---CCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHH
Confidence 3456777777778776554 223334444432 6789999999999999999988 679999999999999999
Q ss_pred hhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC--CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhh
Q 022929 152 QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWM 229 (290)
Q Consensus 152 ~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 229 (290)
++. ++.+..+|+..++ .+++||+|++..+++|++ +...+++++.++|||||.+++..+........ .. ....
T Consensus 83 ~~~---~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~-~~~~ 156 (211)
T 3e23_A 83 RRL---GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRD-KL-ARYY 156 (211)
T ss_dssp HHH---TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC-TT-SCEE
T ss_pred Hhc---CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccc-cc-chhc
Confidence 876 5778899998888 677899999999999998 66789999999999999999986544321110 01 1122
Q ss_pred cCCCHHHHHHHHHHCC-CcEEEEEEcCcc
Q 022929 230 LFPKEEEYIEWFQKAG-FKDVQLKRIGPK 257 (290)
Q Consensus 230 ~~~~~~~~~~ll~~aG-f~~v~~~~~~~~ 257 (290)
.+++.+++.++|+++| |+++++......
T Consensus 157 ~~~~~~~~~~~l~~aG~f~~~~~~~~~~~ 185 (211)
T 3e23_A 157 NYPSEEWLRARYAEAGTWASVAVESSEGK 185 (211)
T ss_dssp CCCCHHHHHHHHHHHCCCSEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHhCCCcEEEEEEeccCC
Confidence 4569999999999999 999999876543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=163.28 Aligned_cols=143 Identities=25% Similarity=0.357 Sum_probs=117.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||||||+|.++..+++.. .+++|+|+|+.+++.|+++. ...+++++.+|+.++++++++||+|++..+++
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~ 114 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH 114 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence 78899999999999999999984 59999999999999998763 23478999999999998888999999999999
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhH-hhhhHH-------HhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFAD-------VWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
|++++..+++++.++|||||.+++.+...+.... ...... ....+++.+++.++|+++||+++++...
T Consensus 115 ~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 115 HFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 9999999999999999999999998654432211 111111 1124568999999999999998887665
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=163.66 Aligned_cols=166 Identities=22% Similarity=0.236 Sum_probs=127.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....+++++.+|+.++++++++||+|++..+++|++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 122 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCCEEEEECCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence 78999999999999999999883 23999999999999999998876789999999999888888999999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCch------------------hHhhhhH-----------HHhhcCCCHHHHHHH
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTF------------------WLSRYFA-----------DVWMLFPKEEEYIEW 240 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~------------------~~~~~~~-----------~~~~~~~~~~~~~~l 240 (290)
++..+++++.++|+|||.+++..+..... ....++. ......++.+++.++
T Consensus 123 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 202 (253)
T 3g5l_A 123 SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQT 202 (253)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHH
Confidence 99999999999999999999974321100 0000000 001112489999999
Q ss_pred HHHCCCcEEEEEEcCcc-------cccccccccceeeeEEEEecC
Q 022929 241 FQKAGFKDVQLKRIGPK-------WYRGVRRHGLIMGCSVTGVKP 278 (290)
Q Consensus 241 l~~aGf~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~a~k~ 278 (290)
|+++||+++++.+..+. .+....+.|.++ .+.++|.
T Consensus 203 l~~aGF~~~~~~e~~~~~~~~~~~~~~~~~~~P~fl--~~~~~~~ 245 (253)
T 3g5l_A 203 LLKNGFQINSVIEPEPAPELKDLPEMQDEYRRPMML--LISATKQ 245 (253)
T ss_dssp HHHTTEEEEEEECCCCCGGGSSCGGGGGGGTSCCEE--EEEEEEC
T ss_pred HHHcCCeeeeeecCCCchhhccChhHHHhhcCceEE--EEEEecc
Confidence 99999999999876432 112333445555 4666554
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=166.91 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=126.1
Q ss_pred HHHhhcccc---CCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC
Q 022929 97 MRDDALEPA---DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL 169 (290)
Q Consensus 97 ~~~~~l~~~---~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l 169 (290)
....++..+ ....++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++.. ..+++++.+|+.++
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 344555555 122478999999999999999999876 5699999999999999987632 25799999999999
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh----HhhhhHHH-hhcCCCHHHHHHHHHHC
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW----LSRYFADV-WMLFPKEEEYIEWFQKA 244 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~ll~~a 244 (290)
|+++++||+|++..+++|++++..+++++.++|||||.+++.++...... ....+... ...+.+.+++.++|+++
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 224 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKEC 224 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHT
T ss_pred CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHC
Confidence 98888999999999999999999999999999999999999876533211 11111111 12356899999999999
Q ss_pred CCcEEEEEEcC
Q 022929 245 GFKDVQLKRIG 255 (290)
Q Consensus 245 Gf~~v~~~~~~ 255 (290)
||+++++..+.
T Consensus 225 Gf~~~~~~~~~ 235 (297)
T 2o57_A 225 GLVTLRTFSRP 235 (297)
T ss_dssp TEEEEEEEECH
T ss_pred CCeEEEEEECc
Confidence 99999998865
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-21 Score=164.44 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=120.5
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
.++.+|||||||+|.++..+++..|+.+++++|+|+.+++.++++. ...+++++..|+.++++++++||+|++..++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 4789999999999999999999988899999999999999998773 2347999999999988888899999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCc-------hhHhhhhH-------HHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPT-------FWLSRYFA-------DVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+|++++..+++++.++|+|||.+++.++.... ......+. .......+..++.++|+++||+++++
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~ 195 (276)
T 3mgg_A 116 EHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRV 195 (276)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEE
T ss_pred hhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEE
Confidence 99999999999999999999999998754321 11111111 11112346689999999999999998
Q ss_pred EEcC
Q 022929 252 KRIG 255 (290)
Q Consensus 252 ~~~~ 255 (290)
+...
T Consensus 196 ~~~~ 199 (276)
T 3mgg_A 196 EPRM 199 (276)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 8653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=166.46 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=110.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecC-ccccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAG-SIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~-~l~~~ 188 (290)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. +++++.+|+.++++ +++||+|++.. +++|+
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP--DAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT--TSEEEECCTTTCCC-SCCEEEEEECTTGGGGS
T ss_pred CCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--CCEEEECChHHCCc-cCCcCEEEEcCchhhhc
Confidence 5689999999999999999988 5799999999999999998865 78999999999887 56799999998 99999
Q ss_pred CC---HHHHHHHHHhccCCCCEEEEEccCCCchhHhh-------------------------------------------
Q 022929 189 PD---PQRGIREAYRVLKLGGKACIIGPVYPTFWLSR------------------------------------------- 222 (290)
Q Consensus 189 ~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~------------------------------------------- 222 (290)
++ ...+++++.++|+|||.+++.....+......
T Consensus 125 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
T 3pfg_A 125 AGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGIT 204 (263)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEE
Confidence 64 45789999999999999999643222110000
Q ss_pred -hhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 223 -YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 223 -~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
........+++.+++.++|+++||+++++.
T Consensus 205 ~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~ 235 (263)
T 3pfg_A 205 HHEESHRITLFTREQYERAFTAAGLSVEFMP 235 (263)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEES
T ss_pred EEEEEEEEEeecHHHHHHHHHHCCCEEEEee
Confidence 000001235789999999999999988773
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=160.54 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=123.9
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC--CCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--PFP 172 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l--~~~ 172 (290)
+.+...+...+....++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++ ++++..|+.+. +++
T Consensus 26 ~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-----~~~~~~d~~~~~~~~~ 98 (240)
T 3dli_A 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK-----FNVVKSDAIEYLKSLP 98 (240)
T ss_dssp HHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT-----SEEECSCHHHHHHTSC
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh-----cceeeccHHHHhhhcC
Confidence 3444455555554457899999999999999999988 67899999999999999975 78888888664 677
Q ss_pred CCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhh-h-hHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 173 TDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSR-Y-FADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
+++||+|++..+++|++++ ..+++++.++|||||.+++..+......... . .......+++.+++.++++++||++
T Consensus 99 ~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 178 (240)
T 3dli_A 99 DKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRD 178 (240)
T ss_dssp TTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEE
T ss_pred CCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeE
Confidence 8889999999999999955 8999999999999999999887755432211 1 1112234578999999999999999
Q ss_pred EEEEEcCc
Q 022929 249 VQLKRIGP 256 (290)
Q Consensus 249 v~~~~~~~ 256 (290)
+++....+
T Consensus 179 ~~~~~~~~ 186 (240)
T 3dli_A 179 VKIEFFEE 186 (240)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 99888763
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=169.26 Aligned_cols=145 Identities=22% Similarity=0.237 Sum_probs=118.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC-----------CCCCceEEEcCCCCC------CC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE-----------PLKECKIVEGDAEDL------PF 171 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----------~~~~v~~~~~d~~~l------~~ 171 (290)
++.+|||||||+|.++..+++.. ++.+|+|+|+|+.+++.|+++. ...+++++.+|+.++ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 78899999999999999999886 5789999999999999999873 236899999999887 88
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh------hhHHHhhcCCCHHHHHHHHHHCC
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR------YFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
++++||+|++..++++++++..+++++.++|||||.+++.+.......... .+.......++.++|.++|+++|
T Consensus 163 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 242 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAG 242 (383)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTT
T ss_pred CCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCC
Confidence 888999999999999999999999999999999999999865433211000 11111223468899999999999
Q ss_pred CcEEEEEEc
Q 022929 246 FKDVQLKRI 254 (290)
Q Consensus 246 f~~v~~~~~ 254 (290)
|+++++...
T Consensus 243 F~~v~~~~~ 251 (383)
T 4fsd_A 243 FRDVRLVSV 251 (383)
T ss_dssp CCCEEEEEE
T ss_pred CceEEEEec
Confidence 998877654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=163.53 Aligned_cols=156 Identities=15% Similarity=0.064 Sum_probs=120.7
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLPFP 172 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~~~ 172 (290)
.+...++.......++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.|+++.... +++++..|+.+++++
T Consensus 65 ~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 143 (241)
T 2ex4_A 65 KFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE 143 (241)
T ss_dssp HHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC
T ss_pred HHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCC
Confidence 3344444444333368899999999999999988875 569999999999999999886543 588999999888877
Q ss_pred CCCccEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHH-HhhcCCCHHHHHHHHHHCCCcEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-VWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
+++||+|++..+++|++++. .+++++.++|+|||.+++.++..... ..+.. .....++.+++.++|+++||+++
T Consensus 144 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 144 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---VILDDVDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---EEEETTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---ceecccCCcccCCHHHHHHHHHHcCCeEE
Confidence 77899999999999998855 89999999999999999987654320 00100 01123478999999999999999
Q ss_pred EEEEcC
Q 022929 250 QLKRIG 255 (290)
Q Consensus 250 ~~~~~~ 255 (290)
+++...
T Consensus 221 ~~~~~~ 226 (241)
T 2ex4_A 221 AEERQE 226 (241)
T ss_dssp EEEECC
T ss_pred EeeecC
Confidence 988764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=157.68 Aligned_cols=152 Identities=20% Similarity=0.305 Sum_probs=122.6
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCcc
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D 177 (290)
.++.+... ++.+|||||||+|.++..+++. +.+++++|+|+.+++.++++.. ..+++++.+|+.++++++++||
T Consensus 13 ~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 89 (239)
T 1xxl_A 13 MIKTAECR-AEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFD 89 (239)
T ss_dssp HHHHHTCC-TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEE
T ss_pred HHHHhCcC-CCCEEEEEccCcCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEE
Confidence 34444443 7899999999999999999988 4599999999999999987642 2478999999999998888999
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh-hhhH-------HHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-RYFA-------DVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
+|++..+++|++++..+++++.++|+|||.+++.+...+..... .... ......++.++|.++|+++||+++
T Consensus 90 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~ 169 (239)
T 1xxl_A 90 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ 169 (239)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEE
T ss_pred EEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEE
Confidence 99999999999999999999999999999999987654332211 1111 111245689999999999999988
Q ss_pred EEEEcC
Q 022929 250 QLKRIG 255 (290)
Q Consensus 250 ~~~~~~ 255 (290)
++....
T Consensus 170 ~~~~~~ 175 (239)
T 1xxl_A 170 DIQKWN 175 (239)
T ss_dssp EEEEEE
T ss_pred EEEeec
Confidence 887753
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=162.43 Aligned_cols=157 Identities=23% Similarity=0.249 Sum_probs=124.9
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCC
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~ 174 (290)
..++..+.. .++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|+++.. ..+++++.+|+.++ ++
T Consensus 62 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~ 136 (302)
T 3hem_A 62 KLALDKLNL-EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DE 136 (302)
T ss_dssp HHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CC
T ss_pred HHHHHHcCC-CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CC
Confidence 345555544 3788999999999999999999875 799999999999999987742 23689999999876 56
Q ss_pred CccEEEecCcccccCCH---------HHHHHHHHhccCCCCEEEEEccCCCchhHhh---------------hhHH---H
Q 022929 175 YADRYVSAGSIEYWPDP---------QRGIREAYRVLKLGGKACIIGPVYPTFWLSR---------------YFAD---V 227 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~---------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~---------------~~~~---~ 227 (290)
+||+|++..+++|++++ ..+++++.++|||||.+++.+.......... ++.. .
T Consensus 137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 216 (302)
T 3hem_A 137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP 216 (302)
T ss_dssp CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCT
T ss_pred CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCC
Confidence 79999999999999765 6899999999999999999877655332111 1111 0
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEcCccccc
Q 022929 228 WMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYR 260 (290)
Q Consensus 228 ~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~ 260 (290)
...+++.+++.++++++||++++++.++.++..
T Consensus 217 ~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~ 249 (302)
T 3hem_A 217 GGRLPRISQVDYYSSNAGWKVERYHRIGANYVP 249 (302)
T ss_dssp TCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHH
T ss_pred CCCCCCHHHHHHHHHhCCcEEEEEEeCchhHHH
Confidence 113568999999999999999999998877543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=157.09 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=120.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--------CceEEEcCCCCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.... ++++...|+..+++++++||+|++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 7789999999999999999998 679999999999999999876543 368999999998888889999999
Q ss_pred cCcccccCCHH---HHHHHHHhccCCCCEEEEEccCCCchh--Hhhhh-HH---------------------HhhcCCCH
Q 022929 182 AGSIEYWPDPQ---RGIREAYRVLKLGGKACIIGPVYPTFW--LSRYF-AD---------------------VWMLFPKE 234 (290)
Q Consensus 182 ~~~l~~~~~~~---~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~~~~-~~---------------------~~~~~~~~ 234 (290)
..+++|++++. .+++++.++|+|||.+++.++...... ..... .. ....+++.
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTE 187 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCH
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCH
Confidence 99999999987 899999999999999999876543211 11110 00 01235789
Q ss_pred HHHHHHHHHCCCcEEEEEEcCccc
Q 022929 235 EEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
+++.++|+++||+++++.......
T Consensus 188 ~~l~~ll~~aGf~~~~~~~~~~~~ 211 (235)
T 3sm3_A 188 KELVFLLTDCRFEIDYFRVKELET 211 (235)
T ss_dssp HHHHHHHHTTTEEEEEEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEEecceee
Confidence 999999999999999998765433
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=157.84 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=120.0
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCc
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~ 176 (290)
....++..+... ++.+|||||||+|.++..+++..|+.+++++|+|+.+++.++++. .+++++.+|+.+++ ++++|
T Consensus 21 ~~~~l~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~--~~~~~~~~d~~~~~-~~~~f 96 (259)
T 2p35_A 21 PARDLLAQVPLE-RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL--PNTNFGKADLATWK-PAQKA 96 (259)
T ss_dssp HHHHHHTTCCCS-CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS--TTSEEEECCTTTCC-CSSCE
T ss_pred HHHHHHHhcCCC-CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--CCcEEEECChhhcC-ccCCc
Confidence 344555555443 678999999999999999999988889999999999999999883 57899999999888 67789
Q ss_pred cEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh----hh---------H---HHhhcCCCHHHHHHH
Q 022929 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR----YF---------A---DVWMLFPKEEEYIEW 240 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----~~---------~---~~~~~~~~~~~~~~l 240 (290)
|+|++..+++|++++..+++++.++|+|||.+++..+......... .. . .....+++.+++.++
T Consensus 97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 97 DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp EEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred CEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 9999999999999999999999999999999999876442211111 00 0 012245789999999
Q ss_pred HHHCCCcEEE
Q 022929 241 FQKAGFKDVQ 250 (290)
Q Consensus 241 l~~aGf~~v~ 250 (290)
|+++||++..
T Consensus 177 l~~aGf~v~~ 186 (259)
T 2p35_A 177 LSPKSSRVDV 186 (259)
T ss_dssp HGGGEEEEEE
T ss_pred HHhcCCceEE
Confidence 9999997543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=153.17 Aligned_cols=137 Identities=22% Similarity=0.290 Sum_probs=115.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++ ..++++...| .++++++||+|++..+++|++
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~--~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK--FDSVITLSDP---KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH--CTTSEEESSG---GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh--CCCcEEEeCC---CCCCCCceEEEEEccchhccc
Confidence 67899999999999999999985 4999999999999999988 4589999998 567778899999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
++..+++++.++|+|||.+++.+......... ......++.+++.++++ ||+++++..+++..+
T Consensus 90 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~ 153 (170)
T 3i9f_A 90 DKQHVISEVKRILKDDGRVIIIDWRKENTGIG----PPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHF 153 (170)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS----SCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEE
T ss_pred CHHHHHHHHHHhcCCCCEEEEEEcCccccccC----chHhhhcCHHHHHHHHh--CcEEEEccCCCCceE
Confidence 99999999999999999999987654432111 11233468999999999 999999988775443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=166.18 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=125.2
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~ 175 (290)
.+++.+....++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++.. ..+++++.+|+.++++++++
T Consensus 107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (312)
T 3vc1_A 107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGA 185 (312)
T ss_dssp HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCC
Confidence 345555523478999999999999999999885 6799999999999999987632 24699999999999888889
Q ss_pred ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh-----HhhhhH-HHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-----LSRYFA-DVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
||+|++..+++|+ ++..+++++.++|||||.+++.++...... ....+. .....+++.+++.++|+++||+++
T Consensus 186 fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~ 264 (312)
T 3vc1_A 186 VTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPH 264 (312)
T ss_dssp EEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEE
T ss_pred EeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEE
Confidence 9999999999999 589999999999999999999875433211 111111 222245789999999999999999
Q ss_pred EEEEcCc
Q 022929 250 QLKRIGP 256 (290)
Q Consensus 250 ~~~~~~~ 256 (290)
+++.++.
T Consensus 265 ~~~~~~~ 271 (312)
T 3vc1_A 265 TIVDLTP 271 (312)
T ss_dssp EEEECHH
T ss_pred EEEeCCH
Confidence 9999875
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=163.71 Aligned_cols=144 Identities=18% Similarity=0.289 Sum_probs=118.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC-CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP-FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~-~~~~~~D~i~~~~~ 184 (290)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .+++++.+|+.+++ +.+++||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4689999999999999999998 78999999999999999987432 46889999998877 67788999999999
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhh----H-------------HHhhcCCCHHHHHHHHHHCCCc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF----A-------------DVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~----~-------------~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
++|++++..+++++.++|||||.+++.++........... . ..+..+++.+++.++|+++||+
T Consensus 146 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 225 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQ 225 (285)
T ss_dssp GGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCE
T ss_pred hhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCc
Confidence 9999999999999999999999999987654322111110 0 0011346889999999999999
Q ss_pred EEEEEEcC
Q 022929 248 DVQLKRIG 255 (290)
Q Consensus 248 ~v~~~~~~ 255 (290)
++++..+.
T Consensus 226 v~~~~~~~ 233 (285)
T 4htf_A 226 IMGKTGVR 233 (285)
T ss_dssp EEEEEEES
T ss_pred eeeeeeEE
Confidence 99988864
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-20 Score=152.93 Aligned_cols=135 Identities=25% Similarity=0.357 Sum_probs=112.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|.++..+++. +++|+|+.+++.++++ +++++.+|+.++++++++||+|++..+++|++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----GVFVLKGTAENLPLKDESFDFALMVTTICFVD 116 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----CCEEEEcccccCCCCCCCeeEEEEcchHhhcc
Confidence 3789999999999999887654 9999999999999976 68899999988888888899999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHH-------HhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-------VWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++..+++++.++|+|||.+++.++............. ....+++.+++.++|+++||+++++...
T Consensus 117 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 117 DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 9999999999999999999998776543321111100 1123468999999999999999988775
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-21 Score=160.64 Aligned_cols=175 Identities=19% Similarity=0.127 Sum_probs=125.2
Q ss_pred HhHHhHhhhcccCCCcccHHHHHhhccccCC-CCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC
Q 022929 77 YRFLSIVYDHVINPGHWTEDMRDDALEPADL-SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
|+.++..|+...........+...+.+.+.. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++..
T Consensus 3 y~~~a~~yd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~ 80 (246)
T 1y8c_A 3 YNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFR 80 (246)
T ss_dssp HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHh
Confidence 5566666665544122223333333333221 126789999999999999999988 6799999999999999987743
Q ss_pred C--CCceEEEcCCCCCCCCCCCccEEEecC-ccccc---CCHHHHHHHHHhccCCCCEEEEEccCCCchhHh--------
Q 022929 156 L--KECKIVEGDAEDLPFPTDYADRYVSAG-SIEYW---PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-------- 221 (290)
Q Consensus 156 ~--~~v~~~~~d~~~l~~~~~~~D~i~~~~-~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-------- 221 (290)
. .+++++.+|+.+++++ ++||+|++.. +++|+ .+...+++++.++|+|||.+++..+........
T Consensus 81 ~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~ 159 (246)
T 1y8c_A 81 SQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNY 159 (246)
T ss_dssp HTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEE
T ss_pred hcCCCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEe
Confidence 2 2689999999888776 6799999998 99999 455689999999999999999854432110000
Q ss_pred ------hhh---------------------------HHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 222 ------RYF---------------------------ADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 222 ------~~~---------------------------~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
..+ ......+++.+++.++|+++||+++++...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 160 DDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred cCCcEEEEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 000 001124579999999999999999988654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=163.85 Aligned_cols=147 Identities=19% Similarity=0.232 Sum_probs=113.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---------------------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------------------- 156 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------------------------- 156 (290)
++.+|||||||+|.++..+++.+++.+|+|+|+|+.+++.|+++...
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 67899999999999999999998889999999999999999987432
Q ss_pred ----------------------------CCceEEEcCCCCCC-----CCCCCccEEEecCcccccC------CHHHHHHH
Q 022929 157 ----------------------------KECKIVEGDAEDLP-----FPTDYADRYVSAGSIEYWP------DPQRGIRE 197 (290)
Q Consensus 157 ----------------------------~~v~~~~~d~~~l~-----~~~~~~D~i~~~~~l~~~~------~~~~~l~~ 197 (290)
.+++|.++|+...+ +..++||+|+|..+++|+. +..+++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 47999999997644 4567899999999997764 56789999
Q ss_pred HHhccCCCCEEEEEccCCCchhHh-----hhhHHHhhcCCCHHHHHHHHHH--CCCcEEEEEEcCc
Q 022929 198 AYRVLKLGGKACIIGPVYPTFWLS-----RYFADVWMLFPKEEEYIEWFQK--AGFKDVQLKRIGP 256 (290)
Q Consensus 198 ~~~~L~pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~--aGf~~v~~~~~~~ 256 (290)
+.++|+|||.|++....+..+... ..........+.++++.++|.+ +||+.+++.....
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~~ 271 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPH 271 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC----
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEeccCC
Confidence 999999999999976543322111 1122222334568899999999 9999888776543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-20 Score=158.02 Aligned_cols=158 Identities=22% Similarity=0.192 Sum_probs=123.4
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~ 172 (290)
....+++.+... ++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++.. ..++++..+|+.+++
T Consensus 52 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-- 127 (287)
T 1kpg_A 52 KIDLALGKLGLQ-PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 127 (287)
T ss_dssp HHHHHHTTTTCC-TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHcCCC-CcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--
Confidence 344555555543 78899999999999999999665 5699999999999999988743 247899999998765
Q ss_pred CCCccEEEecCccccc--CCHHHHHHHHHhccCCCCEEEEEccCCCchhH---------------hhhhHHH---hhcCC
Q 022929 173 TDYADRYVSAGSIEYW--PDPQRGIREAYRVLKLGGKACIIGPVYPTFWL---------------SRYFADV---WMLFP 232 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---------------~~~~~~~---~~~~~ 232 (290)
++||+|++..+++|+ +++..+++++.++|||||.+++.++....... ...+... ...++
T Consensus 128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (287)
T 1kpg_A 128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 206 (287)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCC
Confidence 679999999999999 67789999999999999999998765443211 0001000 12346
Q ss_pred CHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 233 KEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 233 ~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
+.+++.++++++||++++++.++.++.
T Consensus 207 s~~~~~~~l~~aGf~~~~~~~~~~~y~ 233 (287)
T 1kpg_A 207 SIPMVQECASANGFTVTRVQSLQPHYA 233 (287)
T ss_dssp CHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred CHHHHHHHHHhCCcEEEEEEeCcHhHH
Confidence 899999999999999999998876544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=156.69 Aligned_cols=138 Identities=16% Similarity=0.152 Sum_probs=110.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC---CCC-CCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL---PFP-TDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l---~~~-~~~~D~i~~~~~l 185 (290)
++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++ .++.+...|+.++ ++. +.+||+|++..++
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l 126 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA---GAGEVHLASYAQLAEAKVPVGKDYDLICANFAL 126 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT---CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh---cccccchhhHHhhcccccccCCCccEEEECchh
Confidence 5699999999999999999988 67999999999999999987 4677888887654 433 3459999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh--------h-------HHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY--------F-------ADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
+ ..++..+++++.++|+|||.+++.++.......... + ......+++.++|.++|+++||++++
T Consensus 127 ~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 127 L-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp C-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred h-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 9 888999999999999999999998765432211100 0 01112346899999999999999998
Q ss_pred EEE
Q 022929 251 LKR 253 (290)
Q Consensus 251 ~~~ 253 (290)
+..
T Consensus 206 ~~~ 208 (227)
T 3e8s_A 206 LQE 208 (227)
T ss_dssp EEC
T ss_pred Eec
Confidence 876
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=163.95 Aligned_cols=146 Identities=21% Similarity=0.195 Sum_probs=117.2
Q ss_pred CCCCEEEEEcCccchhHHHHH-hhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
.++.+|||||||+|.++..++ ...++.+|+|+|+|+.+++.|+++... .+++++++|+.+++++ ++||+|++..
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 378999999999999999986 456788999999999999999988543 3489999999998877 7899999999
Q ss_pred cccccCCHHH---HHHHHHhccCCCCEEEEEccCCCchhHh-------h-----------hhHH----HhhcCCCHHHHH
Q 022929 184 SIEYWPDPQR---GIREAYRVLKLGGKACIIGPVYPTFWLS-------R-----------YFAD----VWMLFPKEEEYI 238 (290)
Q Consensus 184 ~l~~~~~~~~---~l~~~~~~L~pgG~l~i~~~~~~~~~~~-------~-----------~~~~----~~~~~~~~~~~~ 238 (290)
+++|++++.. +++++.++|||||.+++.+...+..... . .+.. .+..+++.+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 9999998875 7999999999999999987543211000 0 0011 112347899999
Q ss_pred HHHHHCCCcEEEEEEcC
Q 022929 239 EWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 239 ~ll~~aGf~~v~~~~~~ 255 (290)
++|+++||+++++....
T Consensus 276 ~~l~~aGF~~v~~~~~~ 292 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDR 292 (305)
T ss_dssp HHHHHTTCEEEEEECCT
T ss_pred HHHHHCCCEEEEEEccc
Confidence 99999999999888643
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-20 Score=156.42 Aligned_cols=143 Identities=21% Similarity=0.233 Sum_probs=114.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC--CCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++. ...++++..+|+.++++++++||+|++..+++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 37889999999999999999987 689999999999999999885 23579999999999888888899999999999
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCC-ch---h---HhhhhHHHh------hcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYP-TF---W---LSRYFADVW------MLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~-~~---~---~~~~~~~~~------~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
|++++..+++++.++|+|||.+++.....+ .. . ......... ..+++.+++.++|+++||+++.+..
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 195 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTREV 195 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceEEE
Confidence 999999999999999999999988722111 11 0 111111110 1134678999999999999776644
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.8e-20 Score=157.93 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=121.2
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~ 173 (290)
+...+++.+....++.+|||||||+|.++..+++.+| +.+|+|+|+|+.+++.++++.. ..+++++++|+.+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~- 87 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN- 87 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-
Confidence 3334444433334789999999999999999999987 4899999999999999998743 23789999999998875
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC-----c------h-------hHhhhhH----HHhhcC
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP-----T------F-------WLSRYFA----DVWMLF 231 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~-----~------~-------~~~~~~~----~~~~~~ 231 (290)
++||+|++..+++|++++..+++++.++|||||.+++.++... . . .....+. .....+
T Consensus 88 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (284)
T 3gu3_A 88 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDG 167 (284)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCT
T ss_pred CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccc
Confidence 5799999999999999999999999999999999999877610 0 0 0001111 111224
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEc
Q 022929 232 PKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 232 ~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.+..++.++|+++||+.+++...
T Consensus 168 ~~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 168 NIGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp TGGGTHHHHHHHTTCEEEEEEEC
T ss_pred cHHHHHHHHHHHcCCCeEEEEEc
Confidence 46678999999999998877543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=158.41 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=120.6
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCCCCcc
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~~~~D 177 (290)
..++..+.. .++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.++++... .+++++.+|+.++++++++||
T Consensus 83 ~~~l~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLPG-HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhcc-cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 344444433 368899999999999999998874 56899999999999999988653 468999999988888888899
Q ss_pred EEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 178 RYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 178 ~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+|++..+++|+++ ...+++++.++|+|||.+++.++......... .......+++.+++.++|+++||+++++....
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV-DKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE-ETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccccee-cccCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence 9999999999954 67899999999999999999875332110000 00011224588999999999999999887753
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=156.19 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=116.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++. .++.+..+|+.++++ +++||+|++..+++|++
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY--PHLHFDVADARNFRV-DKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC--TTSCEEECCTTTCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC--CCCEEEECChhhCCc-CCCcCEEEEcchhhhCc
Confidence 678999999999999999998 4789999999999999999886 578999999999887 46799999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCch-hHhhhhH----HH---------hhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFA----DV---------WMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~~~~----~~---------~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
++..+++++.++|+|||.+++..+..... .....+. .. ...+++.+++.++|+++||++++++...
T Consensus 132 d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 211 (279)
T 3ccf_A 132 EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFN 211 (279)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEEEec
Confidence 99999999999999999999987654431 1111111 10 0135689999999999999998877653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=161.31 Aligned_cols=167 Identities=13% Similarity=0.091 Sum_probs=117.2
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC-------------------------------
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------------------------------- 157 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 157 (290)
.++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.|+++....
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 36789999999999887766655 1247999999999999998753211
Q ss_pred -Cce-EEEcCCCCC-CC---CCCCccEEEecCccccc-C---CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH
Q 022929 158 -ECK-IVEGDAEDL-PF---PTDYADRYVSAGSIEYW-P---DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227 (290)
Q Consensus 158 -~v~-~~~~d~~~l-~~---~~~~~D~i~~~~~l~~~-~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 227 (290)
++. ++.+|+.+. |+ ..++||+|++..+++|+ + +...+++++.++|||||.+++.+........... ...
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~-~~~ 211 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK-REF 211 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT-EEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCC-eEe
Confidence 122 889999763 43 25689999999999986 3 3458999999999999999998654332110000 001
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEcCcccccccccccceeeeEEEEecCC
Q 022929 228 WMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPA 279 (290)
Q Consensus 228 ~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~k~~ 279 (290)
....++.+++.++|+++||+++++......+.......+.++ .++|+|+.
T Consensus 212 ~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~--~~~a~K~~ 261 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVC--CIVARKKP 261 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEE--EEEEEECC
T ss_pred eccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceE--EEEEEecC
Confidence 122458999999999999999999887644333332222232 47888863
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=155.00 Aligned_cols=139 Identities=9% Similarity=-0.030 Sum_probs=110.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---------------CCCceEEEcCCCCCCCCC-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------LKECKIVEGDAEDLPFPT- 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---------------~~~v~~~~~d~~~l~~~~- 173 (290)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++.. ..+++++++|+.++++.+
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 6789999999999999999998 6899999999999999987743 357999999999988764
Q ss_pred CCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
++||+|++..++++++.. ..+++++.++|||||.+++......... ... .....+.+++.+++++ ||+++.+
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~---~~~--~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---LEG--PPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS---SSS--CCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc---cCC--CCCCCCHHHHHHHhcC-CcEEEEe
Confidence 679999999999998754 4689999999999998555443322110 000 0112578999999998 9998888
Q ss_pred EEcCc
Q 022929 252 KRIGP 256 (290)
Q Consensus 252 ~~~~~ 256 (290)
+....
T Consensus 174 ~~~~~ 178 (203)
T 1pjz_A 174 GGQDT 178 (203)
T ss_dssp EESSC
T ss_pred ccccc
Confidence 77653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=151.76 Aligned_cols=140 Identities=18% Similarity=0.067 Sum_probs=115.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .+++++.+|+.+++ ++++||+|++..++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFF 142 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESST
T ss_pred CCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhh
Confidence 4469999999999999999875 78999999999999999988653 35899999998876 44579999999999
Q ss_pred cccC--CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 186 EYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 186 ~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
++++ +...+++++.++|+|||.+++.+......... ....++.+++.++|+++||++++++......
T Consensus 143 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 211 (235)
T 3lcc_A 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG------PPYKVDVSTFEEVLVPIGFKAVSVEENPHAI 211 (235)
T ss_dssp TTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC------SSCCCCHHHHHHHHGGGTEEEEEEEECTTCC
T ss_pred hcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC------CCccCCHHHHHHHHHHcCCeEEEEEecCCcc
Confidence 9998 77899999999999999999876644321100 1123588999999999999999999876543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-20 Score=160.81 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=108.7
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHH----HHHhhCCCCeE--EEEeCCHHHHHHHhhhCC----CCCceE--EEcCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTL----GIVKHVDAKNV--TILDQSPHQLAKAKQKEP----LKECKI--VEGDAE 167 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~----~l~~~~~~~~v--~~vD~s~~~~~~a~~~~~----~~~v~~--~~~d~~ 167 (290)
.++..+....++.+|||||||+|.++. .++...++..+ +++|+|++|++.|+++.. ..++.+ ...+..
T Consensus 42 ~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~ 121 (292)
T 2aot_A 42 GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS 121 (292)
T ss_dssp HHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHH
T ss_pred hHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchh
Confidence 334433323467899999999997654 34444456644 999999999999987742 234444 344444
Q ss_pred CCC------CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH--------hhcCCC
Q 022929 168 DLP------FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV--------WMLFPK 233 (290)
Q Consensus 168 ~l~------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~ 233 (290)
+++ +++++||+|++.++++|++++.+.++++.++|||||.+++........+. ..+... ...+++
T Consensus 122 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 200 (292)
T 2aot_A 122 EYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD-KLWKKYGSRFPQDDLCQYIT 200 (292)
T ss_dssp HHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHH-HHHHHHGGGSCCCTTCCCCC
T ss_pred hhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHH-HHHHHHHHhccCCCcccCCC
Confidence 332 45678999999999999999999999999999999999998655432211 111111 124578
Q ss_pred HHHHHHHHHHCCCcEEEEE
Q 022929 234 EEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 234 ~~~~~~ll~~aGf~~v~~~ 252 (290)
.++|.++|+++||+++...
T Consensus 201 ~~~~~~~l~~aGf~~~~~~ 219 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYECYD 219 (292)
T ss_dssp HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHCCCceEEEE
Confidence 9999999999999987643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=149.71 Aligned_cols=128 Identities=23% Similarity=0.270 Sum_probs=107.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|.++..+ +..+++++|+|+.+++.++++. .+++++.+|+.++++++++||+|++..+++|++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA--PEATWVRAWGEALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC--TTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC--CCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence 6789999999999998777 2239999999999999999887 578999999999888888899999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH--------HHhhcCCCHHHHHHHHHHCC
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA--------DVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ll~~aG 245 (290)
++.++++++.++|||||.+++.++.....+...... .....+++.+++.++|+ |
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 110 DVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 999999999999999999999987765433211110 11234679999999999 7
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-20 Score=156.84 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=108.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEe-cCccccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS-AGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~-~~~l~~~ 188 (290)
++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.++++. .+++++.+|+.++++ +++||+|+| ..+++|+
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~--~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~ 114 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL--PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYL 114 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC--TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGC
T ss_pred CCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC--CCCEEEECCHHHccc-CCCCcEEEEcCchHhhc
Confidence 67899999999999999999984 49999999999999999886 368999999988877 567999996 5599998
Q ss_pred CCH---HHHHHHHHhccCCCCEEEEEccCCCchhHhh---------------------------------hhH-------
Q 022929 189 PDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSR---------------------------------YFA------- 225 (290)
Q Consensus 189 ~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~---------------------------------~~~------- 225 (290)
+++ ..+++++.++|+|||.+++.++..+...... ...
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (239)
T 3bxo_A 115 KTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVR 194 (239)
T ss_dssp CSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcce
Confidence 653 5799999999999999999765433211000 000
Q ss_pred ----HHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 226 ----DVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 226 ----~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
..+..+++.+++.++|+++||+++.+.
T Consensus 195 ~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~ 225 (239)
T 3bxo_A 195 HFSDVHLITLFHQAEYEAAFTAAGLRVEYLE 225 (239)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEES
T ss_pred EEEEEEEeeecCHHHHHHHHHHCCCEEEEeE
Confidence 001245799999999999999766554
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=157.84 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=124.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC-------------------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE------------------------------- 158 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------------------------------- 158 (290)
++.+|||||||+|.++..++.... .+|+|+|+|+.+++.++++....+
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 678999999999999998887732 499999999999999988755433
Q ss_pred -c-eEEEcCCCCCC-CCC---CCccEEEecCccc----ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh
Q 022929 159 -C-KIVEGDAEDLP-FPT---DYADRYVSAGSIE----YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228 (290)
Q Consensus 159 -v-~~~~~d~~~l~-~~~---~~~D~i~~~~~l~----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~ 228 (290)
+ .+...|+.+.+ +++ ++||+|++..+++ +.+++..+++++.++|||||.+++.+.......... .....
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~-~~~~~ 213 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIG-EQKFS 213 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET-TEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcC-Ccccc
Confidence 6 89999997753 344 7899999999999 555677899999999999999999875433211100 00012
Q ss_pred hcCCCHHHHHHHHHHCCCcEEEEEEcCcccccccccccceeeeEEEEecCC
Q 022929 229 MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPA 279 (290)
Q Consensus 229 ~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~k~~ 279 (290)
...++.+++.++|+++||+++++.....++...+.....+. .++|+|+.
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~--~~~a~K~~ 262 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLF--SLVGRKPG 262 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEE--EEEEECCC
T ss_pred ccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEE--EEEecccc
Confidence 23458899999999999999999987755544443333332 57888864
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9e-20 Score=151.76 Aligned_cols=146 Identities=12% Similarity=0.015 Sum_probs=110.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--------CCceEEEcCCCCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++... .+++++.+|+...+...++||+|++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 67899999999999999999986668999999999999999987532 1689999999877766678999999
Q ss_pred cCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCch-----hHhhhhHHHhhcCCCHHHHH----HHHHHCCCcEEE
Q 022929 182 AGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF-----WLSRYFADVWMLFPKEEEYI----EWFQKAGFKDVQ 250 (290)
Q Consensus 182 ~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~ll~~aGf~~v~ 250 (290)
..+++|++++ ..+++++.++|||||.+++........ .........+...++.+++. ++++++||+++
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~- 187 (217)
T 3jwh_A 109 IEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQ- 187 (217)
T ss_dssp ESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEE-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEE-
Confidence 9999999866 789999999999999766654311000 00001111122335888888 99999999754
Q ss_pred EEEcCc
Q 022929 251 LKRIGP 256 (290)
Q Consensus 251 ~~~~~~ 256 (290)
...++.
T Consensus 188 ~~~~g~ 193 (217)
T 3jwh_A 188 FQPIGE 193 (217)
T ss_dssp ECCCSC
T ss_pred EEecCC
Confidence 344443
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=158.30 Aligned_cols=157 Identities=22% Similarity=0.274 Sum_probs=123.5
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~ 172 (290)
....+++.+... ++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++... .++++..+|+.+++
T Consensus 78 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 153 (318)
T 2fk8_A 78 KVDLNLDKLDLK-PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-- 153 (318)
T ss_dssp HHHHHHTTSCCC-TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--
T ss_pred HHHHHHHhcCCC-CcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--
Confidence 344555555543 78899999999999999999886 57999999999999999887432 45899999998765
Q ss_pred CCCccEEEecCccccc--CCHHHHHHHHHhccCCCCEEEEEccCCCchhHh---------------hhhHHH---hhcCC
Q 022929 173 TDYADRYVSAGSIEYW--PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS---------------RYFADV---WMLFP 232 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---------------~~~~~~---~~~~~ 232 (290)
++||+|++..+++|+ +++..+++++.++|||||.+++.++........ ..+... ...++
T Consensus 154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 232 (318)
T ss_dssp -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCC
Confidence 569999999999999 567899999999999999999988766543211 111100 12346
Q ss_pred CHHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 233 KEEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 233 ~~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
+.+++.++++++||++++++.++.++
T Consensus 233 s~~~~~~~l~~aGf~~~~~~~~~~~y 258 (318)
T 2fk8_A 233 STEMMVEHGEKAGFTVPEPLSLRPHY 258 (318)
T ss_dssp CHHHHHHHHHHTTCBCCCCEECHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEecchhH
Confidence 89999999999999999988876543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-19 Score=156.72 Aligned_cols=164 Identities=26% Similarity=0.362 Sum_probs=127.7
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCc
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~ 176 (290)
.++...... +..+|||||||+|.++..+++.+|+.+++..|+ +.+++.|+++.. ..+++++.+|+.+.+.+ .+
T Consensus 170 ~~~~~~~~~-~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~ 245 (353)
T 4a6d_A 170 SVLTAFDLS-VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EA 245 (353)
T ss_dssp HHHHSSCGG-GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CC
T ss_pred HHHHhcCcc-cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--Cc
Confidence 344444433 568999999999999999999999999999998 899999988754 35799999999876654 38
Q ss_pred cEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCch----hHhhhhHHHh------hcCCCHHHHHHHHHHC
Q 022929 177 DRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTF----WLSRYFADVW------MLFPKEEEYIEWFQKA 244 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~ll~~a 244 (290)
|++++.+++|++++.+ ++|+++++.|+|||++++.+...+.. .....+ +.. ..-+|.++|.++|+++
T Consensus 246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~-dl~ml~~~~g~ert~~e~~~ll~~A 324 (353)
T 4a6d_A 246 DLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLY-SLNMLVQTEGQERTPTHYHMLLSSA 324 (353)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHH-HHHHHHSSSCCCCCHHHHHHHHHHH
T ss_pred eEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHH-HHHHHHhCCCcCCCHHHHHHHHHHC
Confidence 9999999999999874 68999999999999999998764421 111111 111 1236899999999999
Q ss_pred CCcEEEEEEcCcccccccccccceeeeEEEEecCCC
Q 022929 245 GFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPAS 280 (290)
Q Consensus 245 Gf~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~k~~~ 280 (290)
||+.+++.+.+..+ . .|+|+|.+-
T Consensus 325 Gf~~v~v~~~~~~~---------~---~i~ArKgt~ 348 (353)
T 4a6d_A 325 GFRDFQFKKTGAIY---------D---AILARKGTH 348 (353)
T ss_dssp TCEEEEEECCSSSC---------E---EEEEECCCC
T ss_pred CCceEEEEEcCCce---------E---EEEEEecCc
Confidence 99999988765322 1 478888764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-21 Score=173.32 Aligned_cols=226 Identities=16% Similarity=0.135 Sum_probs=145.8
Q ss_pred eecccCCCCCccccCCcCCCCCCccccccCCceeeeeecccccCCCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcc
Q 022929 14 LIRGMTPKGSSFLASDFHGKHIPKLSLIAKPRTVQSIKCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHW 93 (290)
Q Consensus 14 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (290)
+--|..|.+..|....... ..+.+.+ +...|..|.+.......+...... ..+.++......+.. .
T Consensus 26 ~~~~~~p~~~~~~~~~~~~-~~~~~~l----~~~~C~~Cg~v~~~~~~~~~~~y~---~~y~~~~~~~~~~~~------~ 91 (416)
T 4e2x_A 26 LDLGRQPLSDRFRKPDELD-DEFTYRL----AVGRCDSCEMVQLTEEVPRDLMFH---EVYPYHSSGSSVMRE------H 91 (416)
T ss_dssp EEEEEEECTTCCBCTTSCS-CCCEEEE----EEEEETTTCCEEESSCCCHHHHSS---TTCCCCGGGCHHHHH------H
T ss_pred eECCCCCccccCCChhhcC-ccceecc----eEEECCCCCceeecCcCCHHHhcc---CCccCcCcCCHHHHH------H
Confidence 3445666666666554433 3333333 334777787774433332222111 011111111111111 1
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc-eEEEcCCCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-KIVEGDAEDLPFP 172 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v-~~~~~d~~~l~~~ 172 (290)
...+...+++.+... ++.+|||||||+|.++..+++. +.+++|+|+|+.+++.|+++...... .+...+...++++
T Consensus 92 ~~~~~~~l~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 92 FAMLARDFLATELTG-PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRT 168 (416)
T ss_dssp HHHHHHHHHHTTTCS-SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccC
Confidence 233455555655543 7889999999999999999987 67999999999999999976221111 1222333444555
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH---hhcCCCHHHHHHHHHHCCCcEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV---WMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~aGf~~v 249 (290)
+++||+|++.++++|++++..+++++.++|||||.+++..+..........+... +..+++.+++.++++++||+++
T Consensus 169 ~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~ 248 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELV 248 (416)
T ss_dssp HCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEE
T ss_pred CCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEE
Confidence 6789999999999999999999999999999999999987654332222222221 2235799999999999999999
Q ss_pred EEEEcCc
Q 022929 250 QLKRIGP 256 (290)
Q Consensus 250 ~~~~~~~ 256 (290)
+++.++.
T Consensus 249 ~~~~~~~ 255 (416)
T 4e2x_A 249 DVQRLPV 255 (416)
T ss_dssp EEEEECG
T ss_pred EEEEccC
Confidence 9988753
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=151.32 Aligned_cols=146 Identities=15% Similarity=0.063 Sum_probs=110.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--------CCceEEEcCCCCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++... .+++++.+|+...+..+++||+|++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 108 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV 108 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence 67899999999999999999987668999999999999999987532 1789999999887777778999999
Q ss_pred cCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCC-----chhHhhhhHHHhhcCCCHHHHH----HHHHHCCCcEEE
Q 022929 182 AGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP-----TFWLSRYFADVWMLFPKEEEYI----EWFQKAGFKDVQ 250 (290)
Q Consensus 182 ~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~ll~~aGf~~v~ 250 (290)
..+++|++++ ..+++++.++|||||.++....... ...........+...++.+++. ++++++||++.
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~- 187 (219)
T 3jwg_A 109 IEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVR- 187 (219)
T ss_dssp ESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEE-
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEE-
Confidence 9999999866 6899999999999996655432111 0111111111122335888888 88999999654
Q ss_pred EEEcCc
Q 022929 251 LKRIGP 256 (290)
Q Consensus 251 ~~~~~~ 256 (290)
...++.
T Consensus 188 ~~~~g~ 193 (219)
T 3jwg_A 188 FLQIGE 193 (219)
T ss_dssp EEEESC
T ss_pred EEecCC
Confidence 444544
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=148.67 Aligned_cols=149 Identities=20% Similarity=0.105 Sum_probs=114.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++ +|||||||+|.++..+++. +.+++++|+|+.+++.++++... .++.++.+|+.++++++++||+|++.....+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 106 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLP 106 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCC
Confidence 55 9999999999999999887 67999999999999999877431 2688999999988887788999999543222
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccccccc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVR 263 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~ 263 (290)
..+...+++++.++|+|||.+++.++.................+++.+++.++|+ ||++++++........+..
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g~~ 180 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEGAY 180 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCSSS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCCCC
Confidence 2356789999999999999999988765443211111111234679999999999 9999999887665444433
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=148.12 Aligned_cols=142 Identities=22% Similarity=0.268 Sum_probs=117.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC--CCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED--LPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~--l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ++..+|+.+ .++++++||+|++..+++|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~ 105 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKLD----HVVLGDIETMDMPYEEEQFDCVIFGDVLEH 105 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTSS----EEEESCTTTCCCCSCTTCEEEEEEESCGGG
T ss_pred CCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCC----cEEEcchhhcCCCCCCCccCEEEECChhhh
Confidence 7889999999999999999988 4899999999999999997653 788999876 5677778999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-hhH------------HHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-YFA------------DVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++++..+++++.++|+|||.+++..+......... ... ..+..+++.+++.++++++||+++++..+
T Consensus 106 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 106 LFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp SSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEec
Confidence 99999999999999999999999877654332111 111 11124568999999999999999999886
Q ss_pred Ccc
Q 022929 255 GPK 257 (290)
Q Consensus 255 ~~~ 257 (290)
...
T Consensus 186 ~~~ 188 (230)
T 3cc8_A 186 YVD 188 (230)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=154.18 Aligned_cols=153 Identities=22% Similarity=0.174 Sum_probs=120.5
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~ 175 (290)
.++...... +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++.. ..++++..+|+.+ +++. +
T Consensus 160 ~~~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~-~ 235 (332)
T 3i53_A 160 GIAAKYDWA-ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPA-G 235 (332)
T ss_dssp TGGGSSCCG-GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCC-S
T ss_pred HHHHhCCCC-CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCC-C
Confidence 344444432 568999999999999999999999999999999 999999987632 3579999999973 5555 6
Q ss_pred ccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCch----hHhhh-hHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 176 ADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF----WLSRY-FADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
||+|++.+++|+++++ .+++++++++|+|||++++.+...+.. ..... +.......++.++|.++|+++||++
T Consensus 236 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 315 (332)
T 3i53_A 236 AGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAV 315 (332)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEE
T ss_pred CcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEE
Confidence 9999999999999986 689999999999999999988765542 11100 1111223579999999999999999
Q ss_pred EEEEEcCc
Q 022929 249 VQLKRIGP 256 (290)
Q Consensus 249 v~~~~~~~ 256 (290)
+++...+.
T Consensus 316 ~~~~~~~~ 323 (332)
T 3i53_A 316 RAAHPISY 323 (332)
T ss_dssp EEEEECSS
T ss_pred EEEEECCC
Confidence 99987654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-19 Score=149.31 Aligned_cols=143 Identities=14% Similarity=-0.017 Sum_probs=114.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCC-----CCccEEEecC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT-----DYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~-----~~~D~i~~~~ 183 (290)
.++.+|||||||+|.++..+++.. .+|+|+|+|+.+++.++++....+++++++|+.+++... ..||+|++..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHS--SCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhC--CCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 478899999999999999999984 499999999999999999987678999999998865322 2489999999
Q ss_pred cccccC--CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH-----------HHh-----hcCCCHHHHHHHHHHCC
Q 022929 184 SIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA-----------DVW-----MLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 184 ~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~-----------~~~-----~~~~~~~~~~~ll~~aG 245 (290)
++++++ +...+++++.++|||||.+++.+............. ... ...++.+++.+++ +|
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aG 210 (245)
T 3ggd_A 133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PD 210 (245)
T ss_dssp SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TT
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CC
Confidence 999998 678999999999999999999887655322111100 000 1235889999999 89
Q ss_pred CcEEEEEEcC
Q 022929 246 FKDVQLKRIG 255 (290)
Q Consensus 246 f~~v~~~~~~ 255 (290)
|++++...+.
T Consensus 211 f~~~~~~~~~ 220 (245)
T 3ggd_A 211 FEILSQGEGL 220 (245)
T ss_dssp EEEEEEECCB
T ss_pred CEEEeccccc
Confidence 9999887664
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=155.32 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=120.6
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCC
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~ 174 (290)
..+++..... +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++.. ..++++..+|+. .+++.
T Consensus 192 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~- 267 (369)
T 3gwz_A 192 GQVAAAYDFS-GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD- 267 (369)
T ss_dssp HHHHHHSCCT-TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-
T ss_pred HHHHHhCCCc-cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-
Confidence 3444444433 678999999999999999999999999999999 999999987632 357999999998 35655
Q ss_pred CccEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchh--HhhhhH-----HHhhcCCCHHHHHHHHHHCC
Q 022929 175 YADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFW--LSRYFA-----DVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~ll~~aG 245 (290)
+||+|++.+++|++++.. ++++++.+.|+|||++++.+...+... .....+ ......++.++|.++|+++|
T Consensus 268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 347 (369)
T 3gwz_A 268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSG 347 (369)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTT
T ss_pred CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCC
Confidence 699999999999999876 799999999999999999876654311 111111 11123478999999999999
Q ss_pred CcEEEEEEc
Q 022929 246 FKDVQLKRI 254 (290)
Q Consensus 246 f~~v~~~~~ 254 (290)
|+++++...
T Consensus 348 f~~~~~~~~ 356 (369)
T 3gwz_A 348 LRVERSLPC 356 (369)
T ss_dssp EEEEEEEEC
T ss_pred CeEEEEEEC
Confidence 999999773
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=151.24 Aligned_cols=170 Identities=24% Similarity=0.315 Sum_probs=121.9
Q ss_pred HHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC
Q 022929 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
.|+.++..|+....... ...+...+...+. ++.+|||+|||+|.++..+++. .+++|+|+|+.+++.|+++..
T Consensus 3 ~y~~~a~~yd~~~~~~~-~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~ 75 (243)
T 3d2l_A 3 AYEQFAYVYDELMQDVP-YPEWVAWVLEQVE---PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAM 75 (243)
T ss_dssp ---CTTHHHHHHTTTCC-HHHHHHHHHHHSC---TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccc-HHHHHHHHHHHcC---CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhh
Confidence 45566667776554332 2344444444443 5689999999999999999876 699999999999999987743
Q ss_pred --CCCceEEEcCCCCCCCCCCCccEEEecC-cccccCC---HHHHHHHHHhccCCCCEEEEEccCCCchh----------
Q 022929 156 --LKECKIVEGDAEDLPFPTDYADRYVSAG-SIEYWPD---PQRGIREAYRVLKLGGKACIIGPVYPTFW---------- 219 (290)
Q Consensus 156 --~~~v~~~~~d~~~l~~~~~~~D~i~~~~-~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~---------- 219 (290)
..+++++.+|+.+++++ ++||+|++.. +++|+.+ ...+++++.++|+|||.+++..+......
T Consensus 76 ~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~ 154 (243)
T 3d2l_A 76 ETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYAT 154 (243)
T ss_dssp HTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEE
T ss_pred hcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeE
Confidence 24689999999887766 6799999986 9999844 45799999999999999988543211000
Q ss_pred ---------Hh------h-------hh----H--------HHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 220 ---------LS------R-------YF----A--------DVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 220 ---------~~------~-------~~----~--------~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
.. . .+ . .....+++.+++.++|+++||+++++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 222 (243)
T 3d2l_A 155 HAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTG 222 (243)
T ss_dssp ECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEec
Confidence 00 0 00 0 0112357999999999999999988865
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=158.76 Aligned_cols=175 Identities=17% Similarity=0.189 Sum_probs=120.0
Q ss_pred HHhHHh-HhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC
Q 022929 76 FYRFLS-IVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (290)
Q Consensus 76 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~ 154 (290)
+|+... ..|+....... .......++..+.. ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.
T Consensus 50 ~y~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~--~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~ 124 (299)
T 3g2m_A 50 FYDEGAADTYRDLIQDAD-GTSEAREFATRTGP--VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRL 124 (299)
T ss_dssp CC--------------CC-CHHHHHHHHHHHCC--CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHhcccC-ccHHHHHHHHhhCC--CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHH
Confidence 344443 55555544221 23344445555443 4459999999999999999998 689999999999999999875
Q ss_pred CC------CCceEEEcCCCCCCCCCCCccEEEec-CcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHh----
Q 022929 155 PL------KECKIVEGDAEDLPFPTDYADRYVSA-GSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLS---- 221 (290)
Q Consensus 155 ~~------~~v~~~~~d~~~l~~~~~~~D~i~~~-~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---- 221 (290)
.. .+++++++|+.++++ +++||+|++. .++++++. ...+++++.++|+|||.+++..+........
T Consensus 125 ~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 203 (299)
T 3g2m_A 125 AEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLER 203 (299)
T ss_dssp HTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC
T ss_pred hhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhc
Confidence 43 468999999999887 5679999865 55666653 4689999999999999999987654322000
Q ss_pred ---------h---hh--------------------------HHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 222 ---------R---YF--------------------------ADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 222 ---------~---~~--------------------------~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
. .. ......+++.+++.++|+++||+++++..+..
T Consensus 204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~ 276 (299)
T 3g2m_A 204 KQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFAS 276 (299)
T ss_dssp -------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECT
T ss_pred cceeecCCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCC
Confidence 0 00 00011246999999999999999999998764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-19 Score=150.16 Aligned_cols=138 Identities=12% Similarity=0.002 Sum_probs=109.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------------------CCCceEEEcCCCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------------------LKECKIVEGDAEDL 169 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------------------~~~v~~~~~d~~~l 169 (290)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++.. ..+++++++|+.++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 6789999999999999999988 7899999999999999986642 25789999999998
Q ss_pred CCCC-CCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC
Q 022929 170 PFPT-DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 170 ~~~~-~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 246 (290)
+..+ ++||+|++..++++++.. ..+++++.++|||||.+++.+........ .. .....+.+++.++++. +|
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~----~g-~~~~~~~~el~~~l~~-~f 219 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH----AG-PPFYVPSAELKRLFGT-KC 219 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC----CC-SSCCCCHHHHHHHHTT-TE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC----CC-CCCCCCHHHHHHHhhC-Ce
Confidence 8653 689999999999988643 57999999999999999765433221100 00 0112588999999987 59
Q ss_pred cEEEEEEcC
Q 022929 247 KDVQLKRIG 255 (290)
Q Consensus 247 ~~v~~~~~~ 255 (290)
+++..+...
T Consensus 220 ~v~~~~~~~ 228 (252)
T 2gb4_A 220 SMQCLEEVD 228 (252)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeccc
Confidence 988887654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-19 Score=157.88 Aligned_cols=144 Identities=21% Similarity=0.270 Sum_probs=114.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++.. ..+++++.+|+.+ +++.+ ||+|++.+++
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~vl 258 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-ADVVLLSFVL 258 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EEEEEEESCG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CCEEEEeccc
Confidence 678999999999999999999988899999999 999999987632 2379999999976 44444 9999999999
Q ss_pred cccCCHH--HHHHHHHhccCCCCEEEEEcc--CCCch---hHhhhhHHH-----hhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 186 EYWPDPQ--RGIREAYRVLKLGGKACIIGP--VYPTF---WLSRYFADV-----WMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 186 ~~~~~~~--~~l~~~~~~L~pgG~l~i~~~--~~~~~---~~~~~~~~~-----~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
|++++.. .+++++.++|+|||.+++.+. ..+.. ......... ....++.++|.++|+++||+++++..
T Consensus 259 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~ 338 (374)
T 1qzz_A 259 LNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERT 338 (374)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 9998875 899999999999999999887 43221 111111111 12347999999999999999999988
Q ss_pred cCc
Q 022929 254 IGP 256 (290)
Q Consensus 254 ~~~ 256 (290)
.+.
T Consensus 339 ~~~ 341 (374)
T 1qzz_A 339 SGS 341 (374)
T ss_dssp ECC
T ss_pred CCC
Confidence 753
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=151.58 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=98.4
Q ss_pred HhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC
Q 022929 77 YRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 156 (290)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 156 (290)
|+..+..|+.. +|. +...+.+.+.+... ...+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++ .
T Consensus 11 F~~~a~~Y~~~-Rp~-yp~~l~~~l~~~~~---~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~---~ 80 (257)
T 4hg2_A 11 FTPVADAYRAF-RPR-YPRALFRWLGEVAP---ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR---H 80 (257)
T ss_dssp ---------CC-CCC-CCHHHHHHHHHHSS---CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC---C
T ss_pred HHHHHHHHHHH-CCC-cHHHHHHHHHHhcC---CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh---c
Confidence 44556666653 222 34555555554443 4679999999999999999988 6799999999999998874 3
Q ss_pred CCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 157 ~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.+++++++|++++++++++||+|++..++||. +++++++++.++|||||.|++.+...
T Consensus 81 ~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 81 PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp TTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCceeehhhhhhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 57999999999999999999999999999776 57889999999999999999876544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=154.21 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=117.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||||||+|.++..+++.+|+.+++++|++ .+++.|+++.. ..+++++.+|+.+.+++++ ||+|++.+++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l 242 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFL 242 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchh
Confidence 6789999999999999999999888999999999 99999987632 2469999999988776655 9999999999
Q ss_pred cccCCH--HHHHHHHHhccCCCCEEEEEccCCCch----hHhhhhHH---H---hhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 186 EYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF----WLSRYFAD---V---WMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 186 ~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~----~~~~~~~~---~---~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+++++. .++++++.++|+|||.+++.+...+.. .....+.- . ....++.++|.++++++||+++++..
T Consensus 243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~ 322 (335)
T 2r3s_A 243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS 322 (335)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEE
Confidence 999655 589999999999999999987765421 11111110 0 22457899999999999999999877
Q ss_pred cC
Q 022929 254 IG 255 (290)
Q Consensus 254 ~~ 255 (290)
++
T Consensus 323 ~~ 324 (335)
T 2r3s_A 323 LP 324 (335)
T ss_dssp CT
T ss_pred CC
Confidence 64
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-19 Score=145.76 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=110.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ..+++++..|+.++++ +++||+|++..+++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGG
T ss_pred CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhh
Confidence 5679999999999999999988 6799999999999999987632 2368999999988877 67899999999999
Q ss_pred ccC--CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 187 YWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 187 ~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
|++ +...+++++.++|+|||.+++.+......... .......++.+++.+++++ |++++.++.
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---TVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC---CSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC---CCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 997 67899999999999999988876543221100 0112234588999999986 999888765
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=152.69 Aligned_cols=156 Identities=11% Similarity=0.041 Sum_probs=119.2
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHH------HHHHHhhhCCC----CCceEEEcC---
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPH------QLAKAKQKEPL----KECKIVEGD--- 165 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~------~~~~a~~~~~~----~~v~~~~~d--- 165 (290)
.+++.+.. .++.+|||||||+|.++..+++.. +..+|+|+|+|+. +++.|+++... .+++++.+|
T Consensus 34 ~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQV-KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHTC-CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 34444443 378999999999999999999985 4589999999997 88888877432 468999998
Q ss_pred CCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh---Hhh----hhHH-----------H
Q 022929 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW---LSR----YFAD-----------V 227 (290)
Q Consensus 166 ~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~---~~~----~~~~-----------~ 227 (290)
...+++++++||+|++..+++|++++..+++.+.++++|||.+++.+....... ... .... .
T Consensus 113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVAN 192 (275)
T ss_dssp TCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCS
T ss_pred hccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccccc
Confidence 345566778899999999999999998888888888888999999876543211 001 0000 1
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 228 WMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 228 ~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
...+++.+++.++++++||++++++.+..
T Consensus 193 ~~~~~s~~~l~~~l~~aGf~~~~~~~~~~ 221 (275)
T 3bkx_A 193 IRTLITPDTLAQIAHDNTWTYTAGTIVED 221 (275)
T ss_dssp CCCCCCHHHHHHHHHHHTCEEEECCCBCC
T ss_pred ccccCCHHHHHHHHHHCCCeeEEEEEecC
Confidence 11357899999999999999998887743
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=154.78 Aligned_cols=144 Identities=21% Similarity=0.224 Sum_probs=106.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--------------------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------------------------------- 157 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 157 (290)
++.+|||||||+|.....++.. ++.+|+|+|+|+.+++.|+++....
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 6789999999999955444443 3679999999999999988753211
Q ss_pred -CceEEEcCCCC-CCC-----CCCCccEEEecCcccc----cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHH
Q 022929 158 -ECKIVEGDAED-LPF-----PTDYADRYVSAGSIEY----WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226 (290)
Q Consensus 158 -~v~~~~~d~~~-l~~-----~~~~~D~i~~~~~l~~----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 226 (290)
.++++.+|+.+ +|+ ++++||+|++..++++ .+++..+++++.++|||||.+++.......+.... ...
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~-~~~ 228 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG-EAR 228 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET-TEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcC-Cee
Confidence 03466678876 553 3456999999999999 55678999999999999999999753322211000 000
Q ss_pred HhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 227 VWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 227 ~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
....+++.+++.++|+++||+++++..+.
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 11235689999999999999999988776
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=155.99 Aligned_cols=143 Identities=16% Similarity=0.207 Sum_probs=114.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCC--CCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL--PFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l--~~~~~~~D~i~~~~ 183 (290)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++... .+++++.+|+.+. |++ ++||+|++.+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 568999999999999999999999999999999 9999999987442 3699999999875 455 5699999999
Q ss_pred cccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhh-----hhHHH--------hhcCCCHHHHHHHHHHCCCcE
Q 022929 184 SIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSR-----YFADV--------WMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 184 ~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~ll~~aGf~~ 248 (290)
++|++++.+ ++++++.++|+|||.+++.+...+...... ..... ....++.++|.++|+++||++
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~ 336 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEV 336 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeE
Confidence 999998764 789999999999999999887654321110 00000 112468999999999999998
Q ss_pred EEEEEc
Q 022929 249 VQLKRI 254 (290)
Q Consensus 249 v~~~~~ 254 (290)
+++...
T Consensus 337 v~~~~~ 342 (363)
T 3dp7_A 337 EEIQDN 342 (363)
T ss_dssp SCCCCC
T ss_pred EEEEeC
Confidence 877643
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=152.80 Aligned_cols=150 Identities=18% Similarity=0.135 Sum_probs=116.3
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCC--CCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP--FPT 173 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~--~~~ 173 (290)
.+++.+.....+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. ..+++++.+|+.+.+ .+
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~- 246 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG- 246 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT-
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC-
Confidence 3444444432378999999999999999999999999999999 889988887632 246999999998765 44
Q ss_pred CCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchh----HhhhhHH------HhhcCCCHHHHHHHH
Q 022929 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFW----LSRYFAD------VWMLFPKEEEYIEWF 241 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~----~~~~~~~------~~~~~~~~~~~~~ll 241 (290)
++||+|++.+++|++++. ..+++++.++|+|||.+++.+...+... ....+.- .....++.++|.++|
T Consensus 247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 326 (352)
T 3mcz_A 247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVV 326 (352)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHH
T ss_pred CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHH
Confidence 459999999999999876 6899999999999999999876543211 1111110 012357899999999
Q ss_pred HHCCCcEEEE
Q 022929 242 QKAGFKDVQL 251 (290)
Q Consensus 242 ~~aGf~~v~~ 251 (290)
+++||++++.
T Consensus 327 ~~aGf~~~~~ 336 (352)
T 3mcz_A 327 RDAGLAVGER 336 (352)
T ss_dssp HHTTCEEEEE
T ss_pred HHCCCceeee
Confidence 9999998873
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-18 Score=151.06 Aligned_cols=151 Identities=22% Similarity=0.232 Sum_probs=118.0
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccE
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR 178 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~ 178 (290)
..++..+....+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ .+++++.+|+.+ +++.+ |+
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~p~~--D~ 264 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF---SGVEHLGGDMFD-GVPKG--DA 264 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CCCCC--SE
T ss_pred HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc---CCCEEEecCCCC-CCCCC--CE
Confidence 34455444223678999999999999999999999999999999 8888877643 579999999987 66654 99
Q ss_pred EEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchh-------HhhhhH--HH----hhcCCCHHHHHHHHHH
Q 022929 179 YVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFW-------LSRYFA--DV----WMLFPKEEEYIEWFQK 243 (290)
Q Consensus 179 i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~-------~~~~~~--~~----~~~~~~~~~~~~ll~~ 243 (290)
|++.+++|++++.+ +++++++++|+|||++++.+...+... ....++ .. ....++.++|.++|++
T Consensus 265 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~ 344 (368)
T 3reo_A 265 IFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMA 344 (368)
T ss_dssp EEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHH
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHH
Confidence 99999999998765 799999999999999999887643211 001111 00 1234689999999999
Q ss_pred CCCcEEEEEEcCc
Q 022929 244 AGFKDVQLKRIGP 256 (290)
Q Consensus 244 aGf~~v~~~~~~~ 256 (290)
+||+++++.....
T Consensus 345 AGF~~v~~~~~~~ 357 (368)
T 3reo_A 345 SGFRGFKVASCAF 357 (368)
T ss_dssp TTCCEEEEEEEET
T ss_pred CCCeeeEEEEeCC
Confidence 9999999887653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-19 Score=152.58 Aligned_cols=165 Identities=22% Similarity=0.285 Sum_probs=127.9
Q ss_pred hhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHH
Q 022929 69 HKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA 148 (290)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~ 148 (290)
+..+...|++....+....+.+++.++.+...+++.+. .++.+|||+|||+|.++..+++..|+.+++++|+|+.+++
T Consensus 70 ~i~g~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~ 147 (276)
T 2b3t_A 70 HLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVS 147 (276)
T ss_dssp HHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHH
T ss_pred HeeeeeEECCceEEeCCCCcccCchHHHHHHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 33333345554444556677888888989888887765 3678999999999999999998888899999999999999
Q ss_pred HHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEec-------------CcccccC------------CHHHHHHHHHh
Q 022929 149 KAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSA-------------GSIEYWP------------DPQRGIREAYR 200 (290)
Q Consensus 149 ~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~-------------~~l~~~~------------~~~~~l~~~~~ 200 (290)
.++++.. ..+++++++|+.+ ++++++||+|+++ .+++|.+ ....+++++.+
T Consensus 148 ~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~ 226 (276)
T 2b3t_A 148 LAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRN 226 (276)
T ss_dssp HHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHH
Confidence 9998742 2468999999976 3445679999997 3444443 23578999999
Q ss_pred ccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 201 VLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 201 ~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+|+|||.+++... +.+.+++.++++++||+.+++..
T Consensus 227 ~LkpgG~l~~~~~-----------------~~~~~~~~~~l~~~Gf~~v~~~~ 262 (276)
T 2b3t_A 227 ALVSGGFLLLEHG-----------------WQQGEAVRQAFILAGYHDVETCR 262 (276)
T ss_dssp GEEEEEEEEEECC-----------------SSCHHHHHHHHHHTTCTTCCEEE
T ss_pred hcCCCCEEEEEEC-----------------chHHHHHHHHHHHCCCcEEEEEe
Confidence 9999999998742 22568899999999998766554
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-18 Score=150.28 Aligned_cols=152 Identities=22% Similarity=0.277 Sum_probs=118.9
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~ 175 (290)
.+++.+.. .++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. .++++++.+|+.+.++++
T Consensus 181 ~l~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-- 256 (359)
T 1x19_A 181 LLLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-- 256 (359)
T ss_dssp HHHHHCCC-TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC--
T ss_pred HHHHhcCC-CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC--
Confidence 34444443 3678999999999999999999998899999999 999999987632 245999999998877654
Q ss_pred ccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCch---hHhhhhHH---Hh-h----cCCCHHHHHHHHH
Q 022929 176 ADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTF---WLSRYFAD---VW-M----LFPKEEEYIEWFQ 242 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~~---~~-~----~~~~~~~~~~ll~ 242 (290)
+|+|++.++++++++ ..++++++.++|+|||.+++.+...+.. .....+.. .. . .+++.++|.++|+
T Consensus 257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~ 336 (359)
T 1x19_A 257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILE 336 (359)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHH
T ss_pred CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHH
Confidence 499999999999987 5789999999999999999887554321 01111100 00 1 2378999999999
Q ss_pred HCCCcEEEEEEcC
Q 022929 243 KAGFKDVQLKRIG 255 (290)
Q Consensus 243 ~aGf~~v~~~~~~ 255 (290)
++||+++++..++
T Consensus 337 ~aGf~~v~~~~~~ 349 (359)
T 1x19_A 337 SLGYKDVTMVRKY 349 (359)
T ss_dssp HHTCEEEEEEEET
T ss_pred HCCCceEEEEecC
Confidence 9999999988765
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.8e-18 Score=136.28 Aligned_cols=127 Identities=22% Similarity=0.195 Sum_probs=110.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEec-Cccccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSA-GSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~-~~l~~~ 188 (290)
++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. +++++..|+.++++++++||+|++. .++++.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~--~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP--EARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT--TSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC--CCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 7789999999999999999988 6799999999999999998874 6899999998888777889999998 788887
Q ss_pred CC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 189 PD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 189 ~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+. ...+++++.++|+|||.+++..+.... ++.+++.++++++||++++....
T Consensus 122 ~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~--------------~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 122 AEDGREPALANIHRALGADGRAVIGFGAGRG--------------WVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEETTSS--------------CCHHHHHHHHHHHTEEEEEEESS
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCC--------------cCHHHHHHHHHHcCCEEeeeecc
Confidence 43 468999999999999999997654322 37889999999999998877654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.3e-18 Score=149.39 Aligned_cols=153 Identities=19% Similarity=0.234 Sum_probs=120.2
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~ 173 (290)
...+++..... + .+|||||||+|..+..+++.+|+.+++++|+ +.+++.++++.. ..+++++.+|+.+ +++
T Consensus 157 ~~~~~~~~~~~-~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~- 231 (334)
T 2ip2_A 157 FHEIPRLLDFR-G-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP- 231 (334)
T ss_dssp HHHHHHHSCCT-T-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred HHHHHHhCCCC-C-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence 34445544443 4 8999999999999999999998899999999 999999988753 2579999999977 555
Q ss_pred CCccEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCc---hhHhhhhHH-----HhhcCCCHHHHHHHHHH
Q 022929 174 DYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPT---FWLSRYFAD-----VWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~ll~~ 243 (290)
++||+|++.+++|++++.. ++++++.++|+|||.+++.+...+. ......++. .....++.++|.+++++
T Consensus 232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 311 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGR 311 (334)
T ss_dssp SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHH
Confidence 4699999999999998776 8999999999999999998765432 111111110 11234689999999999
Q ss_pred CCCcEEEEEEcC
Q 022929 244 AGFKDVQLKRIG 255 (290)
Q Consensus 244 aGf~~v~~~~~~ 255 (290)
+||+++++...+
T Consensus 312 aGf~~~~~~~~~ 323 (334)
T 2ip2_A 312 GGFAVERIVDLP 323 (334)
T ss_dssp TTEEEEEEEEET
T ss_pred CCCceeEEEECC
Confidence 999999887754
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6e-19 Score=153.40 Aligned_cols=148 Identities=17% Similarity=0.105 Sum_probs=116.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCC-CCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF-PTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~-~~~~~D~i~~~~~ 184 (290)
++.+|||||||+|.++..+++. +..+++|+|+|+.+++.|+++... .++.++.+|+.++++ .+++||+|++..+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 7889999999999999998887 356999999999999999987433 357999999998887 5778999999999
Q ss_pred ccc----cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh---------------------h-------------hhHH
Q 022929 185 IEY----WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS---------------------R-------------YFAD 226 (290)
Q Consensus 185 l~~----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---------------------~-------------~~~~ 226 (290)
++| ..+...+++++.++|+|||.+++..+........ . ....
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 222 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNN 222 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSS
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcC
Confidence 977 3456789999999999999999987653221100 0 0000
Q ss_pred HhhcCCCHHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 227 VWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 227 ~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
....+++.+++.++|+++||+++++..+...+
T Consensus 223 ~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~~ 254 (298)
T 1ri5_A 223 CIEYFVDFTRMVDGFKRLGLSLVERKGFIDFY 254 (298)
T ss_dssp EEEECCCHHHHHHHHHTTTEEEEEEEEHHHHH
T ss_pred CcccccCHHHHHHHHHHcCCEEEEecCHHHHH
Confidence 11235688999999999999999998876543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-19 Score=154.85 Aligned_cols=119 Identities=22% Similarity=0.199 Sum_probs=97.9
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----C---CCCceEEEcC
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----P---LKECKIVEGD 165 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~---~~~v~~~~~d 165 (290)
..+.+...+...+... ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++. . ..++.+..+|
T Consensus 41 ~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d 117 (293)
T 3thr_A 41 RTAEYKAWLLGLLRQH-GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117 (293)
T ss_dssp BCHHHHHHHHHHHHHT-TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred hHHHHHHHHHHHhccc-CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecC
Confidence 3445555555544432 6789999999999999999998 669999999999999998753 1 1357888999
Q ss_pred CCCCC---CCCCCccEEEec-CcccccCC-------HHHHHHHHHhccCCCCEEEEEccC
Q 022929 166 AEDLP---FPTDYADRYVSA-GSIEYWPD-------PQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 166 ~~~l~---~~~~~~D~i~~~-~~l~~~~~-------~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+.+++ +++++||+|++. ++++|+++ ...+++++.++|||||.+++..+.
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 88776 677889999998 89999999 889999999999999999987543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-18 Score=151.31 Aligned_cols=150 Identities=24% Similarity=0.245 Sum_probs=117.2
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEE
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
.++..+....+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|
T Consensus 191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~v 263 (364)
T 3p9c_A 191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF---PGVTHVGGDMFK-EVPSG--DTI 263 (364)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CCCCC--SEE
T ss_pred HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc---CCeEEEeCCcCC-CCCCC--CEE
Confidence 3444443233678999999999999999999999999999999 8888877643 579999999987 76654 999
Q ss_pred EecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCch------hHh-hhhHH------HhhcCCCHHHHHHHHHHC
Q 022929 180 VSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTF------WLS-RYFAD------VWMLFPKEEEYIEWFQKA 244 (290)
Q Consensus 180 ~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~------~~~-~~~~~------~~~~~~~~~~~~~ll~~a 244 (290)
++.+++|++++.+ +++++++++|+|||++++.+...+.. ... ...+- .....++.++|.++|+++
T Consensus 264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~A 343 (364)
T 3p9c_A 264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGA 343 (364)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHT
T ss_pred EehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHC
Confidence 9999999997654 79999999999999999987654321 000 11111 112346899999999999
Q ss_pred CCcEEEEEEcCc
Q 022929 245 GFKDVQLKRIGP 256 (290)
Q Consensus 245 Gf~~v~~~~~~~ 256 (290)
||+.+++..+..
T Consensus 344 GF~~v~~~~~~~ 355 (364)
T 3p9c_A 344 GFTGVKSTYIYA 355 (364)
T ss_dssp TCCEEEEEEEET
T ss_pred CCceEEEEEcCC
Confidence 999999987654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=145.46 Aligned_cols=145 Identities=20% Similarity=0.165 Sum_probs=111.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEecCc--c
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGS--I 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~~~--l 185 (290)
++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++..+ +
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 57899999999999999999884 499999999999999987642 25789999999988877778999999999 5
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh---------hhh-----HHH------------h------hcCCC
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS---------RYF-----ADV------------W------MLFPK 233 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---------~~~-----~~~------------~------~~~~~ 233 (290)
++.++...+++++.++|+|||.+++.++........ ... ... . .....
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 195 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG 195 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc
Confidence 555567789999999999999999986642211000 000 000 0 00111
Q ss_pred HHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 234 EEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 234 ~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
.++.++|+++||+.+++..++..
T Consensus 196 -~~~~~~l~~~GF~~v~~~~~~~~ 218 (227)
T 1ve3_A 196 -KTGVELLAKLYFTKEAEEKVGNY 218 (227)
T ss_dssp -HHHHHHHHTTTEEEEEEEEETTT
T ss_pred -hHHHHHHHHHhhhHHHHHHhCCc
Confidence 47899999999999999998754
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=141.85 Aligned_cols=115 Identities=23% Similarity=0.239 Sum_probs=97.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.++.+|||||||+|.++..++ .+++++|+|+. ++.+..+|+.++++++++||+|++..++| .
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~ 127 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-G 127 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------STTEEESCTTSCSCCTTCEEEEEEESCCC-S
T ss_pred CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------CceEEEeccccCCCCCCCEeEEEEehhcc-c
Confidence 367899999999999987762 68999999877 56789999998888888899999999997 4
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
.++..+++++.++|+|||.+++.+... .+.+.+++.++++++||++++....+
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~i~~~~~--------------~~~~~~~~~~~l~~~Gf~~~~~~~~~ 180 (215)
T 2zfu_A 128 TNIRDFLEEANRVLKPGGLLKVAEVSS--------------RFEDVRTFLRAVTKLGFKIVSKDLTN 180 (215)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEECGG--------------GCSCHHHHHHHHHHTTEEEEEEECCS
T ss_pred cCHHHHHHHHHHhCCCCeEEEEEEcCC--------------CCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 888999999999999999999986532 12378999999999999988765433
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-18 Score=150.91 Aligned_cols=144 Identities=21% Similarity=0.261 Sum_probs=115.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||||||+|.++..+++..|+.+++++|+ +.+++.++++.. ..+++++.+|+.+ +++.+ ||+|++.+++
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~vl 259 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRK-ADAIILSFVL 259 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSC-EEEEEEESCG
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCC-ccEEEEcccc
Confidence 678999999999999999999988899999999 999999987632 2379999999976 44444 9999999999
Q ss_pred cccCCHH--HHHHHHHhccCCCCEEEEEccC-CCch---hHhhhhHH-----HhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 186 EYWPDPQ--RGIREAYRVLKLGGKACIIGPV-YPTF---WLSRYFAD-----VWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 186 ~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~-~~~~---~~~~~~~~-----~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
|++++.+ ++++++.++|+|||.+++.+.. .+.. .....+.. .....++.++|.++|+++||+++++...
T Consensus 260 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 339 (360)
T 1tw3_A 260 LNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQL 339 (360)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeC
Confidence 9998774 7999999999999999998876 3321 11111111 1124579999999999999999998876
Q ss_pred Cc
Q 022929 255 GP 256 (290)
Q Consensus 255 ~~ 256 (290)
+.
T Consensus 340 ~~ 341 (360)
T 1tw3_A 340 PS 341 (360)
T ss_dssp EC
T ss_pred CC
Confidence 53
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-17 Score=133.38 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=110.3
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~ 171 (290)
+.++..++..+... ++.+|||+|||+|.++..+++..|..+++++|+|+.+++.|+++.. ..+++++.+|+.+...
T Consensus 26 ~~i~~~~l~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 104 (204)
T 3e05_A 26 QEVRAVTLSKLRLQ-DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD 104 (204)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT
T ss_pred HHHHHHHHHHcCCC-CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh
Confidence 44545555555543 7899999999999999999999777999999999999999987642 2578999999965433
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
...+||+|++..+++ +...+++++.++|+|||.+++...... +.+++.++++++|| .+++
T Consensus 105 ~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------~~~~~~~~l~~~g~-~~~~ 164 (204)
T 3e05_A 105 DLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD----------------TLTKAVEFLEDHGY-MVEV 164 (204)
T ss_dssp TSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH----------------HHHHHHHHHHHTTC-EEEE
T ss_pred cCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc----------------cHHHHHHHHHHCCC-ceeE
Confidence 335699999988775 778999999999999999999764321 35678899999999 5555
Q ss_pred EEc
Q 022929 252 KRI 254 (290)
Q Consensus 252 ~~~ 254 (290)
..+
T Consensus 165 ~~~ 167 (204)
T 3e05_A 165 ACV 167 (204)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=148.97 Aligned_cols=146 Identities=20% Similarity=0.297 Sum_probs=113.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC-----CCCCceEEEcCCCCCCCCC------CCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE-----PLKECKIVEGDAEDLPFPT------DYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----~~~~v~~~~~d~~~l~~~~------~~~D 177 (290)
++.+|||||||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++. ...+++++++|+.++++.+ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 78999999999999999999875 7899999999999999998873 2458999999999988766 7899
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC---CCc-hhHhhhhHHHh-------hcC--CCHHHHHHHHHHC
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV---YPT-FWLSRYFADVW-------MLF--PKEEEYIEWFQKA 244 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~---~~~-~~~~~~~~~~~-------~~~--~~~~~~~~ll~~a 244 (290)
+|++..+++|+ ++..+++++.++|+|||.+++.+.. ... ......+.... ..+ +..+.+.+.++++
T Consensus 116 ~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~ 194 (299)
T 3g5t_A 116 MITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDS 194 (299)
T ss_dssp EEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTTC
T ss_pred EEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhchhhHHHHHhhhcc
Confidence 99999999999 9999999999999999999884322 111 11112222111 112 3556778999999
Q ss_pred CC-----cEEEEEEcCc
Q 022929 245 GF-----KDVQLKRIGP 256 (290)
Q Consensus 245 Gf-----~~v~~~~~~~ 256 (290)
|| +.++...+..
T Consensus 195 gfp~~~f~~v~~~~~~~ 211 (299)
T 3g5t_A 195 HLDPELFHDIQVSYFCA 211 (299)
T ss_dssp CCCTTTEEEEEEEEECG
T ss_pred CCChHHcCcceEEEecc
Confidence 99 4555555543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=142.73 Aligned_cols=139 Identities=16% Similarity=0.080 Sum_probs=108.7
Q ss_pred CCCEEEEEcCcc---chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCC-----------CCCC
Q 022929 110 RNMLVVDVGGGT---GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLP-----------FPTD 174 (290)
Q Consensus 110 ~~~~vLDiG~G~---G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~-----------~~~~ 174 (290)
...+|||||||+ |.++..+.+..|+.+|+++|+|+.+++.|+++.. ..+++++.+|+.+.+ ++..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 9988777777788999999999999999998753 357999999997531 2224
Q ss_pred CccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCc-hhHh---hhhHHH--hhcCCCHHHHHHHHHHCCC
Q 022929 175 YADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPT-FWLS---RYFADV--WMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~---~~~~~~--~~~~~~~~~~~~ll~~aGf 246 (290)
+||+|++..++||+++ ...+++++.++|+|||.|++.+..... .... ..+... ...+++.+++.++| .||
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l--~G~ 234 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQF--GDF 234 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTT--TTC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHh--CCC
Confidence 6999999999999987 789999999999999999998776532 1111 111111 12356999999999 599
Q ss_pred cEEE
Q 022929 247 KDVQ 250 (290)
Q Consensus 247 ~~v~ 250 (290)
++++
T Consensus 235 ~l~~ 238 (274)
T 2qe6_A 235 ELVE 238 (274)
T ss_dssp EECT
T ss_pred eEcc
Confidence 8765
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=137.51 Aligned_cols=130 Identities=19% Similarity=0.257 Sum_probs=104.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.+++ ++++||+|++..+++|
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHh
Confidence 36789999999999999999988 57999999999999999988653 47999999999887 5678999999999999
Q ss_pred cCCH---HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 188 WPDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 188 ~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
++++ ..+++++.++|+|||.+++.++..... ..+......+.+..++.+ ++..+
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~ 183 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATC-------RRWGHVAGAETVITILTE-ALTEV 183 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH-------HHTTCSCCHHHHHHHHHH-HSEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcc-------hhhhhhhhHHHHHHHHHh-hccce
Confidence 9987 467999999999999999977643211 112223456666666665 35443
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=145.56 Aligned_cols=138 Identities=28% Similarity=0.407 Sum_probs=109.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW- 188 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~- 188 (290)
++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++.. . .++.+|+.++++++++||+|++..++.|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~-~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-K--NVVEAKAEDLPFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-S--CEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC-C--CEEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence 6789999999999999999987 6799999999999999998865 2 28899999988888889999998876665
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccCCCchhHh----h-------hhHHH-----------hhcCCCHHHHHHHHHHCCC
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS----R-------YFADV-----------WMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~----~-------~~~~~-----------~~~~~~~~~~~~ll~~aGf 246 (290)
+++..+++++.++|+|||.+++..+........ . ..... ...+++.+++.++ +||
T Consensus 129 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---aGf 205 (260)
T 2avn_A 129 ENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---EGF 205 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---TTE
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---cCc
Confidence 788999999999999999999986653211100 0 00000 0125688888877 999
Q ss_pred cEEEEEEcC
Q 022929 247 KDVQLKRIG 255 (290)
Q Consensus 247 ~~v~~~~~~ 255 (290)
+++++..+.
T Consensus 206 ~~~~~~~~~ 214 (260)
T 2avn_A 206 ETVDIRGIG 214 (260)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEECCC
Confidence 999888764
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-17 Score=146.65 Aligned_cols=147 Identities=24% Similarity=0.270 Sum_probs=112.0
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~ 175 (290)
.+++..... ++.+|||||||+|.++..+++.+|+.+++++|+ +.++. +++.. ..+++++.+|+.+ +++ +
T Consensus 175 ~~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p--~ 247 (348)
T 3lst_A 175 ILARAGDFP-ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP--H 247 (348)
T ss_dssp HHHHHSCCC-SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC--C
T ss_pred HHHHhCCcc-CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CCC--C
Confidence 334444433 678999999999999999999999999999999 55555 33221 2469999999963 444 6
Q ss_pred ccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCch---hHhhhhH-----HHhhcCCCHHHHHHHHHHCC
Q 022929 176 ADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF---WLSRYFA-----DVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~ll~~aG 245 (290)
||+|++.+++|++++. .+++++++++|||||++++.+...+.. ......+ ......++.++|.++|+++|
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 327 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAG 327 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTT
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCC
Confidence 9999999999999988 589999999999999999987654321 1111111 11123468999999999999
Q ss_pred CcEEEEEE
Q 022929 246 FKDVQLKR 253 (290)
Q Consensus 246 f~~v~~~~ 253 (290)
|+++++..
T Consensus 328 f~~~~~~~ 335 (348)
T 3lst_A 328 LRLDRVVG 335 (348)
T ss_dssp EEEEEEEE
T ss_pred CceEEEEE
Confidence 99999887
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-19 Score=144.39 Aligned_cols=143 Identities=26% Similarity=0.235 Sum_probs=110.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|..+..++.. ++.+++|+|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++..+++|
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 6789999999999985444444 36799999999999999987642 24688999999998888888999999999999
Q ss_pred c--CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-------------hhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 188 W--PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 188 ~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
+ .+...+++++.++|+|||.+++.+.......... .....+..+++.+++.+++.++||...+..
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~ 181 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDR 181 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeeee
Confidence 9 5667899999999999999999876543321100 000112245689999999999999766654
Q ss_pred E
Q 022929 253 R 253 (290)
Q Consensus 253 ~ 253 (290)
.
T Consensus 182 ~ 182 (209)
T 2p8j_A 182 V 182 (209)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=134.16 Aligned_cols=141 Identities=20% Similarity=0.213 Sum_probs=105.2
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCC----CCCCCCCc
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAED----LPFPTDYA 176 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~----l~~~~~~~ 176 (290)
++.+... ++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++... .++.++.+|+.. .++. ++|
T Consensus 67 l~~~~~~-~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~ 144 (230)
T 1fbn_A 67 LKVMPIK-RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKV 144 (230)
T ss_dssp CCCCCCC-TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCE
T ss_pred ccccCCC-CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccE
Confidence 5544443 78899999999999999999997668999999999999999887543 578999999987 6666 679
Q ss_pred cEEEecCcccccCCH---HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 177 DRYVSAGSIEYWPDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 177 D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
|+|+ ++++++ ..+++++.++|+|||.+++..... ........... ..+++. +|+++||++++...
T Consensus 145 D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~~~~~~-----~~~~l~-~l~~~Gf~~~~~~~ 212 (230)
T 1fbn_A 145 DVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKAR-SIDVTKDPKEI-----FKEQKE-ILEAGGFKIVDEVD 212 (230)
T ss_dssp EEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGG-GTCSSSCHHHH-----HHHHHH-HHHHHTEEEEEEEE
T ss_pred EEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecC-CCCCCCCHHHh-----hHHHHH-HHHHCCCEEEEEEc
Confidence 9999 344555 678999999999999999862110 00000000000 236777 89999999998887
Q ss_pred cCc
Q 022929 254 IGP 256 (290)
Q Consensus 254 ~~~ 256 (290)
+.+
T Consensus 213 ~~~ 215 (230)
T 1fbn_A 213 IEP 215 (230)
T ss_dssp CTT
T ss_pred cCC
Confidence 654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=150.45 Aligned_cols=148 Identities=22% Similarity=0.229 Sum_probs=116.0
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEE
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
.++..+....++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. .+++++.+|+.+ +++. ||+|
T Consensus 199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~--~D~v 271 (372)
T 1fp1_D 199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL---SGIEHVGGDMFA-SVPQ--GDAM 271 (372)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CCCC--EEEE
T ss_pred HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc---CCCEEEeCCccc-CCCC--CCEE
Confidence 3444443123678999999999999999999998899999999 9999887753 469999999987 6654 9999
Q ss_pred EecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchh-------HhhhhHH-----HhhcCCCHHHHHHHHHHCC
Q 022929 180 VSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFW-------LSRYFAD-----VWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 180 ~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~ll~~aG 245 (290)
++.+++|++++++ .+++++.++|+|||.+++.+...+... .....+. .....++.++|.++|+++|
T Consensus 272 ~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 351 (372)
T 1fp1_D 272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSG 351 (372)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTT
T ss_pred EEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCC
Confidence 9999999999887 899999999999999999865432110 1111111 1123468999999999999
Q ss_pred CcEEEEEEc
Q 022929 246 FKDVQLKRI 254 (290)
Q Consensus 246 f~~v~~~~~ 254 (290)
|+++++...
T Consensus 352 f~~~~~~~~ 360 (372)
T 1fp1_D 352 FSKFQVACR 360 (372)
T ss_dssp CSEEEEEEE
T ss_pred CceEEEEEc
Confidence 999988774
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-18 Score=143.05 Aligned_cols=101 Identities=25% Similarity=0.289 Sum_probs=83.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEecC-ccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAG-SIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~~-~l~ 186 (290)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++.. ..+++++++|+.+++++ ++||+|++.. .++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchh
Confidence 6789999999999999999987 6799999999999999987643 23689999999887765 5699999864 444
Q ss_pred ccC--CHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWP--DPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+.+ +...+++++.++|+|||.+++..+
T Consensus 118 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 443 346899999999999999987643
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=145.17 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=107.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... +++++.+|+.+++. +++||+|++..+++|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence 6789999999999999999998 679999999999999998774322 78999999988776 667999999999999
Q ss_pred cCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 188 WPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 188 ~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++++ ..+++++.++|+|||.+++........... .......++.+++.++++ +|+++..++.
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~--~~~~~~~~~~ 260 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC---PLPFSFTFAENELKEYYK--DWEFLEYNEN 260 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC---SSCCSCCBCTTHHHHHTT--TSEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC---CCCccccCCHHHHHHHhc--CCEEEEEEcc
Confidence 9654 489999999999999987765433221000 111123457788999886 4988887644
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=146.42 Aligned_cols=138 Identities=24% Similarity=0.325 Sum_probs=111.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.+ +++. ||+|++.+++|+++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS---NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWT 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB---TTEEEEECCTTT-CCCC--CSEEEEESCGGGSC
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC---CCcEEEeccccC-CCCC--ccEEEeehhhccCC
Confidence 668999999999999999999998899999999 9999888753 469999999976 5553 99999999999999
Q ss_pred CHH--HHHHHHHhccCC---CCEEEEEccCCCchh-------HhhhhHH----HhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 190 DPQ--RGIREAYRVLKL---GGKACIIGPVYPTFW-------LSRYFAD----VWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 190 ~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+.+ ++++++.++||| ||++++.+...+... ....++. .....++.++|.++|+++||+++++..
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 887 899999999999 999999876543211 1111110 012346889999999999999998876
Q ss_pred c
Q 022929 254 I 254 (290)
Q Consensus 254 ~ 254 (290)
.
T Consensus 341 ~ 341 (352)
T 1fp2_A 341 L 341 (352)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=138.25 Aligned_cols=135 Identities=19% Similarity=0.088 Sum_probs=108.9
Q ss_pred CcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-CCC
Q 022929 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL 169 (290)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~~l 169 (290)
++..+.+...++.... .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ ..+++++++|+ ..+
T Consensus 31 ~~~~~~l~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~d~~~~~ 104 (226)
T 3m33_A 31 GPDPELTFDLWLSRLL--TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN--APHADVYEWNGKGEL 104 (226)
T ss_dssp SSCTTHHHHHHHHHHC--CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH--CTTSEEEECCSCSSC
T ss_pred CCCHHHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh--CCCceEEEcchhhcc
Confidence 3445556555554432 37899999999999999999998 68999999999999999988 34799999999 567
Q ss_pred CCC-CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 170 PFP-TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 170 ~~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
|++ +++||+|++. .++..+++++.++|||||.++.. ..+.+.+++.+.++++||+.
T Consensus 105 ~~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~-----------------~~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 105 PAGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYV-----------------GPRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp CTTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEE-----------------ESSSCCTHHHHHHHHTTCEE
T ss_pred CCcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEe-----------------CCcCCHHHHHHHHHHCCCeE
Confidence 777 7889999987 45667899999999999999811 11235678999999999998
Q ss_pred EEEEEc
Q 022929 249 VQLKRI 254 (290)
Q Consensus 249 v~~~~~ 254 (290)
+++...
T Consensus 162 ~~~~~~ 167 (226)
T 3m33_A 162 VAEDHV 167 (226)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 887654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=149.37 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=106.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---------CceEEEcCCC------CC--CCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------ECKIVEGDAE------DL--PFP 172 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------~v~~~~~d~~------~l--~~~ 172 (290)
++.+|||||||+|..+..++.. ++.+|+|+|+|+.+++.|+++.... +++|.+.|+. ++ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 5789999999999877766654 3579999999999999999874321 2567788872 22 245
Q ss_pred CCCccEEEecCccccc---CCHHHHHHHHHhccCCCCEEEEEccCCCchhH----------------h------------
Q 022929 173 TDYADRYVSAGSIEYW---PDPQRGIREAYRVLKLGGKACIIGPVYPTFWL----------------S------------ 221 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~----------------~------------ 221 (290)
+++||+|+|..++||. .+...+++++.++|||||.+++.++....... .
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 6789999999999875 34578999999999999999987653211000 0
Q ss_pred --hhhH-----HHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 222 --RYFA-----DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 222 --~~~~-----~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.+.. +....+.+.+++.++++++||++++...+..
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~~ 248 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFAT 248 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHHH
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChHH
Confidence 0000 0011246789999999999999999987754
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-17 Score=129.27 Aligned_cols=138 Identities=20% Similarity=0.161 Sum_probs=109.1
Q ss_pred ccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC
Q 022929 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA 166 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~ 166 (290)
++.|++.++.+.+. +.... .++.+|||+|||+|.++..+++. + +++|+|+|+.+++. ..+++++++|+
T Consensus 3 v~~P~~~~~~l~~~-l~~~~--~~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~------~~~~~~~~~d~ 70 (170)
T 3q87_B 3 WYEPGEDTYTLMDA-LEREG--LEMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES------HRGGNLVRADL 70 (170)
T ss_dssp SCCCCHHHHHHHHH-HHHHT--CCSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT------CSSSCEEECST
T ss_pred ccCcCccHHHHHHH-HHhhc--CCCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc------ccCCeEEECCh
Confidence 44566656666555 33321 25679999999999999999998 4 99999999999987 35789999999
Q ss_pred CCCCCCCCCccEEEecCcccccCCH---------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHH
Q 022929 167 EDLPFPTDYADRYVSAGSIEYWPDP---------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEY 237 (290)
Q Consensus 167 ~~l~~~~~~~D~i~~~~~l~~~~~~---------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
.+ ++++++||+|+++..+++.++. ..+++++.+.| |||.+++...... +.+++
T Consensus 71 ~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~----------------~~~~l 132 (170)
T 3q87_B 71 LC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN----------------RPKEV 132 (170)
T ss_dssp TT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG----------------CHHHH
T ss_pred hh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC----------------CHHHH
Confidence 87 6666789999999888765544 46888888888 9999998764321 56889
Q ss_pred HHHHHHCCCcEEEEEEc
Q 022929 238 IEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 238 ~~ll~~aGf~~v~~~~~ 254 (290)
.++++++||+.+.+...
T Consensus 133 ~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 133 LARLEERGYGTRILKVR 149 (170)
T ss_dssp HHHHHHTTCEEEEEEEE
T ss_pred HHHHHHCCCcEEEEEee
Confidence 99999999998887764
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=134.50 Aligned_cols=127 Identities=15% Similarity=0.109 Sum_probs=102.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCC---CCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFP---TDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~---~~~~D~i~~~~ 183 (290)
++.+|||||||+|..+..++...++.+|+++|+|+.+++.|+++. ...+++++++|+.++++. +++||+|++..
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 678999999999999999998777889999999999999998763 224699999999776643 56799999876
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+.+...+++.+.++|+|||.+++........ ..+++.+.++++||++.++..+
T Consensus 150 ----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~--------------~~~~~~~~l~~~g~~~~~~~~~ 202 (240)
T 1xdz_A 150 ----VARLSVLSELCLPLVKKNGLFVALKAASAEE--------------ELNAGKKAITTLGGELENIHSF 202 (240)
T ss_dssp ----CSCHHHHHHHHGGGEEEEEEEEEEECC-CHH--------------HHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----cCCHHHHHHHHHHhcCCCCEEEEEeCCCchH--------------HHHHHHHHHHHcCCeEeEEEEE
Confidence 3678899999999999999998863221110 2356778899999998887765
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=131.78 Aligned_cols=127 Identities=22% Similarity=0.133 Sum_probs=103.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC--CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~--~~~~~~D~i~~~~~ 184 (290)
++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.|+++.. ..++.++.+|+.+++ +++++||+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 6789999999999999999999888999999999999999987642 257999999998876 66778999999865
Q ss_pred ccccC--------CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 185 IEYWP--------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 185 l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
..+.. ....+++++.++|+|||.+++.+.... ..+.+.+.++++||+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG----------------LFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH----------------HHHHHHHHHHHHTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH----------------HHHHHHHHHHHCCCeeeecc
Confidence 43322 125799999999999999998753211 12566778889999887765
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=131.14 Aligned_cols=143 Identities=11% Similarity=0.057 Sum_probs=106.7
Q ss_pred ccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCC---CCCCCCccE
Q 022929 104 PADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDL---PFPTDYADR 178 (290)
Q Consensus 104 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l---~~~~~~~D~ 178 (290)
.+.. ++|.+|||+|||+|.++..+++.. |..+|+|+|+++++++.++++.. ..|+..+..|.... +...+.+|+
T Consensus 72 ~l~i-kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 72 ELPV-KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCCC-CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred hcCC-CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 3444 499999999999999999999985 56899999999999999988865 35788899888553 455677999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
|++. +.+..+...++.++.+.|||||.+++............. .. ..++..+.|+++||++++...+.+
T Consensus 151 Vf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~-~~------~~~~ev~~L~~~GF~l~e~i~L~p 219 (233)
T 4df3_A 151 LYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEP-SE------VYKREIKTLMDGGLEIKDVVHLDP 219 (233)
T ss_dssp EEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCC-CH------HHHHHHHHHHHTTCCEEEEEECTT
T ss_pred EEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCCh-HH------HHHHHHHHHHHCCCEEEEEEccCC
Confidence 9864 344456678999999999999999987433221100000 00 123445778899999999888755
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-16 Score=127.64 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=105.2
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCC-CceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLK-ECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~-~v~~~~~d~~~l~~ 171 (290)
.++..++..+... ++.+|||+|||+|.++..+++. +.+|+++|+|+++++.|+++. ... +++++.+|+.+...
T Consensus 42 ~~~~~~l~~l~~~-~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 118 (204)
T 3njr_A 42 PMRALTLAALAPR-RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA 118 (204)
T ss_dssp HHHHHHHHHHCCC-TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT
T ss_pred HHHHHHHHhcCCC-CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc
Confidence 4444455555443 7899999999999999999998 789999999999999998873 233 79999999977322
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
...+||+|++...+ +.. +++++.++|+|||.+++...... +..++.+++++.|+++.++
T Consensus 119 ~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~----------------~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 119 DLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE----------------SETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp TSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH----------------HHHHHHHHHHHHCSEEEEE
T ss_pred cCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc----------------cHHHHHHHHHhCCCcEEEE
Confidence 23469999987754 456 99999999999999998765421 3467788999999988776
Q ss_pred EE
Q 022929 252 KR 253 (290)
Q Consensus 252 ~~ 253 (290)
..
T Consensus 178 ~~ 179 (204)
T 3njr_A 178 DI 179 (204)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-18 Score=139.17 Aligned_cols=152 Identities=18% Similarity=0.103 Sum_probs=102.0
Q ss_pred hcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEE
Q 022929 85 DHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIV 162 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~ 162 (290)
..++.|++.++.+...+++.+....++.+|||+|||+|.++..+++..++.+++|+|+|+.+++.++++.... +++++
T Consensus 5 ~~~~~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 84 (215)
T 4dzr_A 5 PDCLIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWA 84 (215)
T ss_dssp GGGGSCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CC
T ss_pred CCccCCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEE
Confidence 4566777778888888887765434789999999999999999999988889999999999999999886543 57778
Q ss_pred EcCCCCCCCCC-----CCccEEEecCcccccCCH--------------------------HHHHHHHHhccCCCCEEEEE
Q 022929 163 EGDAEDLPFPT-----DYADRYVSAGSIEYWPDP--------------------------QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 163 ~~d~~~l~~~~-----~~~D~i~~~~~l~~~~~~--------------------------~~~l~~~~~~L~pgG~l~i~ 211 (290)
++|+.+ ++++ ++||+|+++...++..+. ..+++++.++|+|||.+++.
T Consensus 85 ~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 85 AADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp HHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred EcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 888866 4444 779999996444322211 67888999999999994444
Q ss_pred ccCCCchhHhhhhHHHhhcCCCHHHHHHHHH--HCCCcEEEEEE
Q 022929 212 GPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ--KAGFKDVQLKR 253 (290)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~aGf~~v~~~~ 253 (290)
.... ...+++.++++ ++||..+++..
T Consensus 164 ~~~~----------------~~~~~~~~~l~~~~~gf~~~~~~~ 191 (215)
T 4dzr_A 164 EVGH----------------NQADEVARLFAPWRERGFRVRKVK 191 (215)
T ss_dssp ECTT----------------SCHHHHHHHTGGGGGGTEECCEEE
T ss_pred EECC----------------ccHHHHHHHHHHhhcCCceEEEEE
Confidence 3321 14678888999 99997766554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-17 Score=129.35 Aligned_cols=136 Identities=14% Similarity=0.147 Sum_probs=104.9
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---C-CceEEEcCCCC-CC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---K-ECKIVEGDAED-LP 170 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~-~v~~~~~d~~~-l~ 170 (290)
.++..++..+.. .++.+|||+|||+|.++..+++..++.+++++|+|+.+++.|+++... . ++ ++..|..+ ++
T Consensus 12 ~~~~~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~ 89 (178)
T 3hm2_A 12 HVRALAISALAP-KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFD 89 (178)
T ss_dssp HHHHHHHHHHCC-CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGG
T ss_pred HHHHHHHHHhcc-cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhh
Confidence 344455555544 377899999999999999999998889999999999999999977322 2 56 78888743 33
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
...++||+|++..++++ ..+++++.++|+|||.+++.+.... +...+..++++.|+++.+
T Consensus 90 ~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 90 DVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE----------------SEQMLWALRKQFGGTISS 149 (178)
T ss_dssp GCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH----------------HHHHHHHHHHHHCCEEEE
T ss_pred ccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc----------------cHHHHHHHHHHcCCeeEE
Confidence 33267999999999887 5689999999999999998765432 245677888999988776
Q ss_pred EEE
Q 022929 251 LKR 253 (290)
Q Consensus 251 ~~~ 253 (290)
+..
T Consensus 150 ~~~ 152 (178)
T 3hm2_A 150 FAI 152 (178)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-18 Score=145.03 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=104.6
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCC-
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDL- 169 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l- 169 (290)
|...+...+.+... .++.+|||||||+|..+..+++.. ..+++++|+|+.+++.|+++... .++.++.+|..++
T Consensus 45 we~~~m~~~a~~~~--~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~ 121 (236)
T 3orh_A 45 WETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp GGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHHHhhc--cCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhc
Confidence 44444433333332 378999999999999999998875 46899999999999999987543 3477788887543
Q ss_pred -CCCCCCccEEEe-----cCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 170 -PFPTDYADRYVS-----AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 170 -~~~~~~~D~i~~-----~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
++++++||.|+. ...++|.++...+++++.++|||||++.+.+................. ...+.+...|.+
T Consensus 122 ~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~e 199 (236)
T 3orh_A 122 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITI--MFEETQVPALLE 199 (236)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHH--HHHHHTHHHHHH
T ss_pred ccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhh--hhHHHHHHHHHH
Confidence 467788999975 455667778889999999999999999875321100000000000000 013456677889
Q ss_pred CCCcEEEE
Q 022929 244 AGFKDVQL 251 (290)
Q Consensus 244 aGf~~v~~ 251 (290)
+||+++.+
T Consensus 200 aGF~~~~i 207 (236)
T 3orh_A 200 AGFRRENI 207 (236)
T ss_dssp HTCCGGGE
T ss_pred cCCeEEEE
Confidence 99986544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=129.62 Aligned_cols=127 Identities=19% Similarity=0.141 Sum_probs=100.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCC--CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~--~~~~~~D~i~~~~~ 184 (290)
++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.|+++. ...+++++.+|+.+++ +++++||.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 578999999999999999999988899999999999999998763 2357999999998765 66778999987654
Q ss_pred ccccCC--------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 185 IEYWPD--------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 185 l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
..+... ...+++++.++|+|||.+++.+.... ..+.+.+.++++||....+.
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~----------------~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG----------------LFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH----------------HHHHHHHHHHHHTCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCcccccc
Confidence 332221 25789999999999999998753211 12455677888899876654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-17 Score=135.24 Aligned_cols=149 Identities=14% Similarity=0.132 Sum_probs=99.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCC-HHHHHHH---hhhC---CCCCceEEEcCCCCCCCC-CCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS-PHQLAKA---KQKE---PLKECKIVEGDAEDLPFP-TDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s-~~~~~~a---~~~~---~~~~v~~~~~d~~~l~~~-~~~~D~i~~ 181 (290)
++.+|||||||+|.++..+++..++.+|+|+|+| +.+++.| +++. ...++.+..+|+.++|.. .+.+|.|++
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 6789999999999999999987778999999999 6676666 6543 234789999999887531 133455544
Q ss_pred cCcccc-----cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCC-----HHHHHHHHHHCCCcEEEE
Q 022929 182 AGSIEY-----WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK-----EEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 182 ~~~l~~-----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~aGf~~v~~ 251 (290)
.....+ ..+...+++++.++|||||.+++................ ....++ .+++.++++++||++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~el~~~l~~aGf~v~~~ 182 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKR-GLPLLSKAYFLSEQYKAELSNSGFRIDDV 182 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC---------------CCHHHHHSHHHHHHHHHHTCEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhc-CCCCCChhhcchHHHHHHHHHcCCCeeee
Confidence 332211 123356899999999999999984433322110000000 001112 234899999999999999
Q ss_pred EEcCcccc
Q 022929 252 KRIGPKWY 259 (290)
Q Consensus 252 ~~~~~~~~ 259 (290)
+.++.++.
T Consensus 183 ~~~~~~~~ 190 (225)
T 3p2e_A 183 KELDNEYV 190 (225)
T ss_dssp EEECHHHH
T ss_pred eecCHHHH
Confidence 99886654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=141.41 Aligned_cols=139 Identities=24% Similarity=0.276 Sum_probs=111.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ +||+|++.+++|+++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~ 265 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---NENLNFVGGDMFK-SIP--SADAVLLKWVLHDWN 265 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---CSSEEEEECCTTT-CCC--CCSEEEEESCGGGSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---CCCcEEEeCccCC-CCC--CceEEEEcccccCCC
Confidence 568999999999999999999999899999999 788877765 2469999999987 665 399999999999999
Q ss_pred CHH--HHHHHHHhccCC---CCEEEEEccCCCch-------hHhhhhHH-----HhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 190 DPQ--RGIREAYRVLKL---GGKACIIGPVYPTF-------WLSRYFAD-----VWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 190 ~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
+.+ ++++++.++|+| ||++++.+...+.. .....++- .....++.++|.++|+++||+++++.
T Consensus 266 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 345 (358)
T 1zg3_A 266 DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT 345 (358)
T ss_dssp HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEE
Confidence 877 999999999999 99999987653321 11111110 11234689999999999999999887
Q ss_pred EcC
Q 022929 253 RIG 255 (290)
Q Consensus 253 ~~~ 255 (290)
..+
T Consensus 346 ~~~ 348 (358)
T 1zg3_A 346 PIS 348 (358)
T ss_dssp EET
T ss_pred ecC
Confidence 743
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-17 Score=136.44 Aligned_cols=146 Identities=18% Similarity=0.133 Sum_probs=105.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHH----hhh---CCCCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA----KQK---EPLKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a----~~~---~~~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
++.+|||||||+|.++..+++..|+.+|+|+|+|+.+++.+ +++ ....+++++++|+.++++.++. |.|+..
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 77899999999999999999998889999999999977753 322 2234799999999999887665 776632
Q ss_pred C---cc--cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCC----CHHHHHHHHHHCCCcEEEEEE
Q 022929 183 G---SI--EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFP----KEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 183 ~---~l--~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~aGf~~v~~~~ 253 (290)
. .+ +|++++..+++++.++|||||.+++............... ..... ..+.+.++++++||++.+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~ 183 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVG--EHPEPTPDSADEWLAPRYAEAGWKLADCRY 183 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGT--TCCCCCHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccc--cCCccchHHHHHHHHHHHHHcCCCceeeec
Confidence 2 22 2667778999999999999999998532211100000000 00011 134588899999999999988
Q ss_pred cCccc
Q 022929 254 IGPKW 258 (290)
Q Consensus 254 ~~~~~ 258 (290)
+....
T Consensus 184 ~~~~~ 188 (218)
T 3mq2_A 184 LEPEE 188 (218)
T ss_dssp ECHHH
T ss_pred cchhh
Confidence 76543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=139.28 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=102.5
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCC-
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDL- 169 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l- 169 (290)
|...+...+..... .++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|+++... .+++++.+|+.++
T Consensus 45 ~~~~~~~~l~~~~~--~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~ 121 (236)
T 1zx0_A 45 WETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp GGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHHhhcC--CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhh
Confidence 44444444333322 367899999999999999997752 45899999999999999987532 4688999999877
Q ss_pred -CCCCCCccEEEe-cCcccccC-----CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 170 -PFPTDYADRYVS-AGSIEYWP-----DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 170 -~~~~~~~D~i~~-~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
++++++||+|++ .+.+ +.+ +.+.+++++.++|||||.+++.+................. ...+.....|.
T Consensus 122 ~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 198 (236)
T 1zx0_A 122 PTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITI--MFEETQVPALL 198 (236)
T ss_dssp GGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHH--HHHHHTHHHHH
T ss_pred cccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhh--hccHHHHHHHH
Confidence 788889999999 5554 222 2346799999999999999887543110000000000000 01245567889
Q ss_pred HCCCcE
Q 022929 243 KAGFKD 248 (290)
Q Consensus 243 ~aGf~~ 248 (290)
++||+.
T Consensus 199 ~aGF~~ 204 (236)
T 1zx0_A 199 EAGFRR 204 (236)
T ss_dssp HTTCCG
T ss_pred HCCCCC
Confidence 999984
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=132.80 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=100.5
Q ss_pred CCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCC-CCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDL-PFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l-~~~~~~~D~i~~~~~ 184 (290)
.++.+|||+||| +|.++..+++.. +.+|+|+|+|+.+++.|+++.... +++++.+|+..+ ++++++||+|+++..
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 378999999999 999999999885 689999999999999999874322 689999997433 355678999999866
Q ss_pred ccccCC-------------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 185 IEYWPD-------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 185 l~~~~~-------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
.++.++ ...+++++.++|+|||.+++..+.... ..+++.+++++.|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---------------~~~~~~~~l~~~g 197 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK---------------LLNVIKERGIKLG 197 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH---------------HHHHHHHHHHHTT
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh---------------HHHHHHHHHHHcC
Confidence 554332 367999999999999999987543211 3578889999999
Q ss_pred CcEEEEEE
Q 022929 246 FKDVQLKR 253 (290)
Q Consensus 246 f~~v~~~~ 253 (290)
|++..+..
T Consensus 198 ~~~~~~~~ 205 (230)
T 3evz_A 198 YSVKDIKF 205 (230)
T ss_dssp CEEEEEEE
T ss_pred CceEEEEe
Confidence 97666543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=135.86 Aligned_cols=130 Identities=18% Similarity=0.291 Sum_probs=105.6
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCc
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~ 176 (290)
+..+.. .++.+|||+|||+|.++..+++. .|+.+++++|+++.+++.|+++.. ..+++++.+|+.+ ++++++|
T Consensus 103 ~~~~~~-~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~f 180 (275)
T 1yb2_A 103 IMRCGL-RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMY 180 (275)
T ss_dssp ---CCC-CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCE
T ss_pred HHHcCC-CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCc
Confidence 333433 37889999999999999999987 567899999999999999998743 3478999999987 5666789
Q ss_pred cEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
|+|++ +.+++..+++++.++|+|||.+++.++... ..+++.+.++++||..+++.+.
T Consensus 181 D~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----------------~~~~~~~~l~~~Gf~~~~~~~~ 237 (275)
T 1yb2_A 181 DAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD----------------QSEKTVLSLSASGMHHLETVEL 237 (275)
T ss_dssp EEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH----------------HHHHHHHHSGGGTEEEEEEEEE
T ss_pred cEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCeEEEEEEE
Confidence 99998 567788999999999999999999875421 2356778888999998888764
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=133.85 Aligned_cols=128 Identities=17% Similarity=0.142 Sum_probs=103.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCC---CCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFP---TDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~---~~~~D~i~~~~ 183 (290)
++.+|||||||+|..+..++...|+.+|+++|+|+.+++.|+++. ...+++++++|+++++.. +++||+|++..
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a 159 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA 159 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence 678999999999999999999988899999999999999999774 234699999999776542 46799999975
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+ .+...+++.+.++|||||.+++........ ...++.+.+++.||++.++..+.
T Consensus 160 ~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~--------------e~~~~~~~l~~~G~~~~~~~~~~ 213 (249)
T 3g89_A 160 V----APLCVLSELLLPFLEVGGAAVAMKGPRVEE--------------ELAPLPPALERLGGRLGEVLALQ 213 (249)
T ss_dssp S----CCHHHHHHHHGGGEEEEEEEEEEECSCCHH--------------HHTTHHHHHHHHTEEEEEEEEEE
T ss_pred c----CCHHHHHHHHHHHcCCCeEEEEEeCCCcHH--------------HHHHHHHHHHHcCCeEEEEEEee
Confidence 4 456789999999999999998764322111 23456778888999999888764
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.8e-16 Score=126.13 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=104.1
Q ss_pred cccHHHHHhhccccCCCC--CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCC
Q 022929 92 HWTEDMRDDALEPADLSN--RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDA 166 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~ 166 (290)
+..+.+...+++.+.... ++.+|||+|||+|.++..++...|+.+++++|+|+.+++.++++. ...+++++.+|+
T Consensus 45 ~~~~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 124 (207)
T 1jsx_A 45 DPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV 124 (207)
T ss_dssp ---CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT
T ss_pred CHHHHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecch
Confidence 344445555555433211 478999999999999999999888899999999999999998763 233589999999
Q ss_pred CCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC
Q 022929 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 167 ~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 246 (290)
.+.+ +.++||+|++.. ..+...+++.+.++|+|||.+++.... ...+++.++++ ||
T Consensus 125 ~~~~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~-----------------~~~~~~~~~~~--g~ 180 (207)
T 1jsx_A 125 EEFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALKGQ-----------------MPEDEIALLPE--EY 180 (207)
T ss_dssp TTSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEESS-----------------CCHHHHHTSCT--TE
T ss_pred hhCC-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEeCC-----------------CchHHHHHHhc--CC
Confidence 8865 456799999754 356788999999999999999887432 13456666655 99
Q ss_pred cEEEEEEc
Q 022929 247 KDVQLKRI 254 (290)
Q Consensus 247 ~~v~~~~~ 254 (290)
+++++..+
T Consensus 181 ~~~~~~~~ 188 (207)
T 1jsx_A 181 QVESVVKL 188 (207)
T ss_dssp EEEEEEEE
T ss_pred ceeeeeee
Confidence 88876643
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=129.12 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=91.9
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
.++.+|||+|||+|.++..+++..+ .+++++|+|+.+++.++++... .+++++.+|+.++++++++||+|++..++++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 3778999999999999999998832 3899999999999999988653 5789999999988888888999999888876
Q ss_pred cC---------------CHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 188 WP---------------DPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 188 ~~---------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+. +...+++++.++|+|||.+++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 54 44689999999999999999988654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=121.66 Aligned_cols=133 Identities=23% Similarity=0.306 Sum_probs=106.0
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP 170 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~ 170 (290)
.+.+...+++.+... ++.+|||+|||+|.++..+++ ++.+++++|+|+.+++.++++.. ..+++++.+|+.+ +
T Consensus 20 ~~~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~ 95 (183)
T 2yxd_A 20 KEEIRAVSIGKLNLN-KDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V 95 (183)
T ss_dssp CHHHHHHHHHHHCCC-TTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H
T ss_pred HHHHHHHHHHHcCCC-CCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c
Confidence 455555555555443 778999999999999999988 57899999999999999998742 2468999999876 5
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
+++++||+|++..+ .+...+++++.++ |||.+++..+... +..++.+.++++||++..
T Consensus 96 ~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~----------------~~~~~~~~l~~~g~~~~~ 153 (183)
T 2yxd_A 96 LDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE----------------NAAKIINEFESRGYNVDA 153 (183)
T ss_dssp GGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH----------------HHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc----------------cHHHHHHHHHHcCCeEEE
Confidence 56667999999888 6778899999998 9999999875422 246788999999997665
Q ss_pred EE
Q 022929 251 LK 252 (290)
Q Consensus 251 ~~ 252 (290)
+.
T Consensus 154 ~~ 155 (183)
T 2yxd_A 154 VN 155 (183)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-16 Score=128.76 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=102.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++.. ..+++++.+|+.+.+ +++||+|++...++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFDLIVANILAE 136 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEEEEEEESCHH
T ss_pred CCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCceEEEECCcHH
Confidence 6789999999999999998875 55799999999999999998732 234899999997643 46799999988776
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+ ...+++++.++|+|||.+++.+.... +.+++.++++++||+++++...+
T Consensus 137 ~---~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~~~~Gf~~~~~~~~~ 186 (205)
T 3grz_A 137 I---LLDLIPQLDSHLNEDGQVIFSGIDYL----------------QLPKIEQALAENSFQIDLKMRAG 186 (205)
T ss_dssp H---HHHHGGGSGGGEEEEEEEEEEEEEGG----------------GHHHHHHHHHHTTEEEEEEEEET
T ss_pred H---HHHHHHHHHHhcCCCCEEEEEecCcc----------------cHHHHHHHHHHcCCceEEeeccC
Confidence 5 36789999999999999998754332 35788999999999988877643
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-15 Score=124.56 Aligned_cols=133 Identities=17% Similarity=0.056 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCC----CCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDL----PFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l----~~~~~~~D~i~~~~ 183 (290)
+++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.+... ..++.++.+|+... ++. ++||+|++..
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQDI 134 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence 37889999999999999999998766799999999986644332211 24788888898763 444 6799999872
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHH----HHHHHCCCcEEEEEEcCc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI----EWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ll~~aGf~~v~~~~~~~ 256 (290)
.+ ..+...+++++.++|||||.+++...... .....+.+++. +.++++ |++++.....+
T Consensus 135 -~~-~~~~~~~l~~~~r~LkpgG~l~i~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p 197 (210)
T 1nt2_A 135 -AQ-KNQIEILKANAEFFLKEKGEVVIMVKARS-----------IDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMP 197 (210)
T ss_dssp -CS-TTHHHHHHHHHHHHEEEEEEEEEEEEHHH-----------HCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTT
T ss_pred -cC-hhHHHHHHHHHHHHhCCCCEEEEEEecCC-----------ccccCCHHHHHHHHHHHHHhh-cEEeeeecCCC
Confidence 21 12233468999999999999998732210 00111334432 337888 99999888754
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=130.11 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=108.5
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCCCCCCCC
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~~l~~~~ 173 (290)
..++..+.. .++.+|||+|||+|.++..+++. .|+.+++++|+++.+++.|+++. ...++++...|+.+.++++
T Consensus 86 ~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLDL-APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcCC-CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 344444444 37899999999999999999998 45789999999999999999874 3457999999998877777
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
++||+|++ +.+++..+++++.++|+|||.+++..+... ...++.+.++++||..+++.+
T Consensus 165 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT----------------QVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp TCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH----------------HHHHHHHHHTTTTEEEEEEEE
T ss_pred CCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCceEEEEE
Confidence 78999997 456777899999999999999999875431 135677788889999887766
Q ss_pred c
Q 022929 254 I 254 (290)
Q Consensus 254 ~ 254 (290)
.
T Consensus 224 ~ 224 (258)
T 2pwy_A 224 V 224 (258)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=123.47 Aligned_cols=135 Identities=16% Similarity=0.238 Sum_probs=103.1
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCC--ceEEEcCCCCCCCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKE--CKIVEGDAEDLPFP 172 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~--v~~~~~d~~~l~~~ 172 (290)
...+++.+... ++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.. ..+ ++++.+|+.+ +..
T Consensus 41 ~~~l~~~~~~~-~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~ 116 (194)
T 1dus_A 41 TKILVENVVVD-KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVK 116 (194)
T ss_dssp HHHHHHHCCCC-TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCT
T ss_pred HHHHHHHcccC-CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccc
Confidence 33444444443 7789999999999999999988 7899999999999999988742 233 8999999977 444
Q ss_pred CCCccEEEecCcccc-cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 173 TDYADRYVSAGSIEY-WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+++||+|++...+++ ..+...+++++.++|+|||.+++..+.... ..++.+.+++. |..+++
T Consensus 117 ~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~----------------~~~~~~~l~~~-~~~~~~ 179 (194)
T 1dus_A 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG----------------AKSLAKYMKDV-FGNVET 179 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH----------------HHHHHHHHHHH-HSCCEE
T ss_pred cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC----------------hHHHHHHHHHH-hcceEE
Confidence 667999999888776 345668999999999999999998765422 23466677766 544444
Q ss_pred EE
Q 022929 252 KR 253 (290)
Q Consensus 252 ~~ 253 (290)
..
T Consensus 180 ~~ 181 (194)
T 1dus_A 180 VT 181 (194)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-16 Score=132.46 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=84.7
Q ss_pred CCCEEEEEcCccch----hHHHHHhhCC----CCeEEEEeCCHHHHHHHhhhC---------------------C---C-
Q 022929 110 RNMLVVDVGGGTGF----TTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE---------------------P---L- 156 (290)
Q Consensus 110 ~~~~vLDiG~G~G~----~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~---------------------~---~- 156 (290)
++.+|+|+|||+|. ++..+++..+ +.+|+|+|+|+.+++.|+++. . .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 6666766644 469999999999999999763 0 0
Q ss_pred ---------CCceEEEcCCCCCCCC-CCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEE
Q 022929 157 ---------KECKIVEGDAEDLPFP-TDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 157 ---------~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 211 (290)
.++.|.+.|+.+.+++ .++||+|+|.++++|+++. .++++++.+.|+|||.|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2588999999886554 4679999999999999766 68999999999999999884
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-16 Score=136.31 Aligned_cols=145 Identities=19% Similarity=0.136 Sum_probs=110.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----------CCCceEEEcCCCCCC----CC--C
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----------LKECKIVEGDAEDLP----FP--T 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----------~~~v~~~~~d~~~l~----~~--~ 173 (290)
++.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.. ..+++++++|+.+++ ++ +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 6789999999999999999875 47899999999999999987642 236899999998865 43 4
Q ss_pred CCccEEEecCccccc-CC---HHHHHHHHHhccCCCCEEEEEccCCCchhHh-------hh--------hH---------
Q 022929 174 DYADRYVSAGSIEYW-PD---PQRGIREAYRVLKLGGKACIIGPVYPTFWLS-------RY--------FA--------- 225 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~-~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-------~~--------~~--------- 225 (290)
++||+|++..++||. .+ ...+++++.++|+|||.+++..+........ .. +.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 192 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG 192 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence 489999999999987 44 4589999999999999999986643211000 00 00
Q ss_pred -----------HHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 226 -----------DVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 226 -----------~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+......+.+++.+++++.||++++...+.
T Consensus 193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f~ 233 (313)
T 3bgv_A 193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFL 233 (313)
T ss_dssp CEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEHH
T ss_pred ceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCHH
Confidence 000122467899999999999999988764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=145.68 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=116.5
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC---------CCCCceEEEcC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---------PLKECKIVEGD 165 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~---------~~~~v~~~~~d 165 (290)
.....+++.+... ++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++. ...+++++++|
T Consensus 708 qRle~LLelL~~~-~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGD 786 (950)
T 3htx_A 708 QRVEYALKHIRES-SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGS 786 (950)
T ss_dssp HHHHHHHHHHHHS-CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESC
T ss_pred HHHHHHHHHhccc-CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECc
Confidence 3344444444332 68899999999999999999985 3479999999999999998731 23479999999
Q ss_pred CCCCCCCCCCccEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhh-----------------HH
Q 022929 166 AEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYF-----------------AD 226 (290)
Q Consensus 166 ~~~l~~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-----------------~~ 226 (290)
+.++++.+++||+|++..+++|++++. .+++++.++|||| .+++.++..........+ ..
T Consensus 787 a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh 865 (950)
T 3htx_A 787 ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRN 865 (950)
T ss_dssp TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSC
T ss_pred hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccc
Confidence 999998888999999999999999866 5999999999999 877777654321111110 00
Q ss_pred H-hhcCCCHHHHHH----HHHHCCCcEEEEEEcCcc
Q 022929 227 V-WMLFPKEEEYIE----WFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 227 ~-~~~~~~~~~~~~----ll~~aGf~~v~~~~~~~~ 257 (290)
. +...++.+++.. +.++.||+ ++...++..
T Consensus 866 ~DHrFEWTReEFr~Wae~LAer~GYs-VefvGVGDg 900 (950)
T 3htx_A 866 HDHKFEWTREQFNQWASKLGKRHNYS-VEFSGVGGS 900 (950)
T ss_dssp SSCSCCBCHHHHHHHHHHHHHHTTEE-EEEEEESSC
T ss_pred cCcceeecHHHHHHHHHHHHHhcCcE-EEEEccCCC
Confidence 0 011235666666 77788996 456667654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-15 Score=129.72 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCccchhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCC---C-CCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP---L-KECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~---~-~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
.++.+|||+|||+|.++..+++. .|..+++++|+|+.+++.|+++.. . .+++++.+|+.+. +++++||+|++
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~-- 187 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFL-- 187 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEE--
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEE--
Confidence 37889999999999999999998 457899999999999999998742 1 4688999998775 55667999998
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+.+++..+++++.++|+|||.+++..+... ...++.+.|++.||..+++.+.
T Consensus 188 ---~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----------------~~~~~~~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 188 ---DVPDPWNYIDKCWEALKGGGRFATVCPTTN----------------QVQETLKKLQELPFIRIEVWES 239 (277)
T ss_dssp ---CCSCGGGTHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHSSEEEEEEECC
T ss_pred ---CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCceeEEEEE
Confidence 346777899999999999999999875321 2356777888899998877654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=122.98 Aligned_cols=136 Identities=26% Similarity=0.314 Sum_probs=105.4
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---C-CCceEEEcCCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-KECKIVEGDAE 167 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~-~~v~~~~~d~~ 167 (290)
...+.++..++..+... ++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++.. . .++++..+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 92 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEPG-KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 (192)
T ss_dssp CCCHHHHHHHHHHHCCC-TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred CChHHHHHHHHHhcCCC-CCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence 34455666666655543 78899999999999999999884 899999999999999987632 2 47889999886
Q ss_pred CCCCCC-CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC
Q 022929 168 DLPFPT-DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 168 ~l~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 246 (290)
+ +++. ++||+|++..+++ +...+++++.++|+|||.+++...... +..++.+.+++.||
T Consensus 93 ~-~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~----------------~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 93 E-ALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILLE----------------TKFEAMECLRDLGF 152 (192)
T ss_dssp H-HHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH----------------HHHHHHHHHHHTTC
T ss_pred H-hcccCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCcc----------------hHHHHHHHHHHCCC
Confidence 5 2222 4699999987765 457899999999999999998765321 24678899999999
Q ss_pred cEEE
Q 022929 247 KDVQ 250 (290)
Q Consensus 247 ~~v~ 250 (290)
.+..
T Consensus 153 ~~~~ 156 (192)
T 1l3i_A 153 DVNI 156 (192)
T ss_dssp CCEE
T ss_pred ceEE
Confidence 5433
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-15 Score=127.11 Aligned_cols=136 Identities=17% Similarity=0.120 Sum_probs=108.7
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPF 171 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~ 171 (290)
....++..+.. .++.+|||+|||+|.++..+++. .|+.+++++|+|+.+++.|+++.. .++++++.+|+.+. +
T Consensus 81 ~~~~i~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 158 (255)
T 3mb5_A 81 DAALIVAYAGI-SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-I 158 (255)
T ss_dssp HHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-C
T ss_pred HHHHHHHhhCC-CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-c
Confidence 33444555544 37899999999999999999998 668999999999999999998742 23489999999763 6
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC--CcEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG--FKDV 249 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG--f~~v 249 (290)
++++||+|++ +.+++..+++++.++|+|||.+++..+... ..+++.+.+++.| |..+
T Consensus 159 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~l~~~g~~f~~~ 217 (255)
T 3mb5_A 159 EEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSN----------------QVMRLHEKLREFKDYFMKP 217 (255)
T ss_dssp CCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHTGGGBSCC
T ss_pred CCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH----------------HHHHHHHHHHHcCCCcccc
Confidence 6778999997 456777899999999999999998765421 2467788999999 9888
Q ss_pred EEEEcC
Q 022929 250 QLKRIG 255 (290)
Q Consensus 250 ~~~~~~ 255 (290)
++.+..
T Consensus 218 ~~~e~~ 223 (255)
T 3mb5_A 218 RTINVL 223 (255)
T ss_dssp EEECCC
T ss_pred EEEEEe
Confidence 876654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=128.64 Aligned_cols=128 Identities=19% Similarity=0.216 Sum_probs=101.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCC--CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP--FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~--~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.|+++.. ..+++++++|+.+++ +++++||+|+++-
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 578999999999999999999854 499999999999999998743 235899999997764 4567899999964
Q ss_pred ccccc--------------------CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 184 SIEYW--------------------PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 184 ~l~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
..... .+...+++.+.++|+|||.++++.... ...++.+.+++
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------~~~~~~~~l~~ 190 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE-----------------RLLDIIDIMRK 190 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT-----------------THHHHHHHHHH
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH-----------------HHHHHHHHHHH
Confidence 43322 113469999999999999999864321 45778899999
Q ss_pred CCCcEEEEEEcC
Q 022929 244 AGFKDVQLKRIG 255 (290)
Q Consensus 244 aGf~~v~~~~~~ 255 (290)
.||....+..+.
T Consensus 191 ~~~~~~~~~~v~ 202 (259)
T 3lpm_A 191 YRLEPKRIQFVH 202 (259)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCCceEEEEEee
Confidence 999988877653
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-15 Score=126.52 Aligned_cols=128 Identities=18% Similarity=0.242 Sum_probs=100.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---C----CceEEEcCCCCC-------CCCCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---K----ECKIVEGDAEDL-------PFPTDY 175 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~----~v~~~~~d~~~l-------~~~~~~ 175 (290)
++.+|||+|||+|.++..+++..++.+++++|+++.+++.|+++... . +++++++|+.+. ++++++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 67899999999999999999998888999999999999999998765 2 488999999876 255678
Q ss_pred ccEEEecCccccc------------------CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHH
Q 022929 176 ADRYVSAGSIEYW------------------PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEY 237 (290)
Q Consensus 176 ~D~i~~~~~l~~~------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
||+|+++-..... .....+++.+.++|+|||.++++.... ...++
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------~~~~~ 178 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ-----------------SVAEI 178 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG-----------------GHHHH
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH-----------------HHHHH
Confidence 9999997332211 235689999999999999998864321 23567
Q ss_pred HHHHHHCCCcEEEEEEcC
Q 022929 238 IEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 238 ~~ll~~aGf~~v~~~~~~ 255 (290)
.+.+++. |...++..+.
T Consensus 179 ~~~l~~~-~~~~~i~~v~ 195 (260)
T 2ozv_A 179 IAACGSR-FGGLEITLIH 195 (260)
T ss_dssp HHHHTTT-EEEEEEEEEE
T ss_pred HHHHHhc-CCceEEEEEc
Confidence 7777764 8777666543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-16 Score=124.97 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=96.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC---CCCCccEEEecCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSAGSI 185 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~---~~~~~D~i~~~~~l 185 (290)
.++.+|||+|||. +++|+|+.|++.|+++... ++++.++|+.++++ ++++||+|++..++
T Consensus 11 ~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN-EGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT-TSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc-CcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 3789999999986 2399999999999988643 58999999988876 77889999999999
Q ss_pred ccc-CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 186 EYW-PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 186 ~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+|+ ++...+++++.++|||||.+++..+...... . ....++.+++.++|+++|| +. +...
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~------~-~~~~~~~~~~~~~l~~aGf-i~-~~~~ 134 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD------N-NSKVKTASKLCSALTLSGL-VE-VKEL 134 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC------S-SSSSCCHHHHHHHHHHTTC-EE-EEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc------c-ccccCCHHHHHHHHHHCCC-cE-eecC
Confidence 999 8999999999999999999999654321100 0 1123478999999999999 44 5443
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=126.57 Aligned_cols=144 Identities=16% Similarity=0.088 Sum_probs=98.3
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCC---CCCCCCCc
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAED---LPFPTDYA 176 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~---l~~~~~~~ 176 (290)
++.+.. .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.+.++... .+++++.+|+.+ +++.+++|
T Consensus 70 l~~~~~-~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 70 VDQIHI-KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp CSCCCC-CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCE
T ss_pred HheecC-CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcE
Confidence 334433 378899999999999999999986 458999999998765555443221 579999999977 34456689
Q ss_pred cEEEecCcccccCCH-HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 177 DRYVSAGSIEYWPDP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 177 D~i~~~~~l~~~~~~-~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
|+|++... .++. ..++.++.++|||||.+++..... ........... +. .+ .++|+++||++++...+.
T Consensus 149 D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~-~~~~~~~~~~~----~~-~~-~~~l~~~Gf~~~~~~~~~ 218 (233)
T 2ipx_A 149 DVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKAN-CIDSTASAEAV----FA-SE-VKKMQQENMKPQEQLTLE 218 (233)
T ss_dssp EEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHH-HHCSSSCHHHH----HH-HH-HHTTGGGTEEEEEEEECT
T ss_pred EEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEccc-ccccCCCHHHH----HH-HH-HHHHHHCCCceEEEEecC
Confidence 99998544 2222 456889999999999999953221 00000000000 01 23 588999999998877664
Q ss_pred c
Q 022929 256 P 256 (290)
Q Consensus 256 ~ 256 (290)
+
T Consensus 219 ~ 219 (233)
T 2ipx_A 219 P 219 (233)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-16 Score=126.05 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=94.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC-CCCCCccEEEecC-c
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP-FPTDYADRYVSAG-S 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~-~~~~~~D~i~~~~-~ 184 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..+++++..|...++ +.+++||+|+++. .
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 7899999999999999999988 7899999999999999988743 257899987776643 3466799998863 2
Q ss_pred ccc-------c-CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 185 IEY-------W-PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 185 l~~-------~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+++ . .+....++++.++|||||.+++............. ....++.+.+...+|.+.....+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEK--------DAVLEYVIGLDQRVFTAMLYQPLN 170 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHH--------HHHHHHHHHSCTTTEEEEEEEESS
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHH--------HHHHHHHHhCCCceEEEEEehhhc
Confidence 221 1 22346889999999999999987653221100000 012445555556678877776543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=128.79 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=85.2
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC--CCCCCCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED--LPFPTDY 175 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~--l~~~~~~ 175 (290)
...+++.+... ++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++.....+.....++.. ....+++
T Consensus 34 ~~~il~~l~l~-~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLENIV-PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTTCC-TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcCCC-CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 34445555543 7899999999999999999987 68999999999999999998764433322223221 0112457
Q ss_pred ccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEcc
Q 022929 176 ADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
||+|++..+++|+.. ....++++.++| |||.+++...
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 999999999998864 356999999999 9999998754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=133.05 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=102.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------CCCCceEEEcCCCCCCC--CCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDLPF--PTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~v~~~~~d~~~l~~--~~~~~D~i~ 180 (290)
++.+|||||||+|.++..+++..+..+++++|+|+.+++.|+++. ...+++++.+|+.+... .+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 568999999999999999998866789999999999999999876 23579999999866432 356799999
Q ss_pred ecCcccccCCH----HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 181 SAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 181 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+.....+.+.. .++++++.++|+|||.+++....... . ....+++.+.++++||..++.....
T Consensus 175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~---~---------~~~~~~~~~~l~~~GF~~v~~~~~~ 241 (304)
T 3bwc_A 175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL---D---------LELIEKMSRFIRETGFASVQYALMH 241 (304)
T ss_dssp EECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT---C---------HHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc---c---------hHHHHHHHHHHHhCCCCcEEEEEee
Confidence 97665544332 57999999999999999987543200 0 0135678899999999988877654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-15 Score=127.17 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=104.9
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC----C--CCCceEEEcCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE----P--LKECKIVEGDAEDL 169 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~----~--~~~v~~~~~d~~~l 169 (290)
....++..+.. .++.+|||+|||+|.++..+++.. ++.+++++|+++.+++.|+++. . ..++++..+|+.+.
T Consensus 87 ~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 87 DAAQIVHEGDI-FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHcCC-CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 33444554444 378899999999999999999863 5689999999999999998874 2 35799999999887
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH-CCCcE
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK-AGFKD 248 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-aGf~~ 248 (290)
++++++||+|++ +.+++..+++++.++|+|||.+++..+... ...++.+.+++ .||..
T Consensus 166 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----------------~~~~~~~~l~~~~~f~~ 224 (280)
T 1i9g_A 166 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVT----------------QLSRIVEALRAKQCWTE 224 (280)
T ss_dssp CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHHSSBCC
T ss_pred CCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH----------------HHHHHHHHHHhcCCcCC
Confidence 777778999998 445777899999999999999999875431 12344555665 78876
Q ss_pred EEEEEc
Q 022929 249 VQLKRI 254 (290)
Q Consensus 249 v~~~~~ 254 (290)
+++.+.
T Consensus 225 ~~~~~~ 230 (280)
T 1i9g_A 225 PRAWET 230 (280)
T ss_dssp CEEECC
T ss_pred cEEEEE
Confidence 666543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-14 Score=119.40 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=94.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC-CCCCceEEEcCCCCCC---CCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~ 183 (290)
+++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++...+.. ...|+.++.+|+.... ...++||+|++..
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI 154 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence 489999999999999999999874 3679999999998754322111 1258999999987532 1235799999875
Q ss_pred cccccCCHHHH-HHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 184 SIEYWPDPQRG-IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 184 ~l~~~~~~~~~-l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
.. ++...+ ...+.++|||||.+++....... +.........++..+.|+++||++++...+.+.
T Consensus 155 a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~-------d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~ 219 (232)
T 3id6_C 155 AQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSI-------DVTKDPKEIYKTEVEKLENSNFETIQIINLDPY 219 (232)
T ss_dssp CC---TTHHHHHHHHHHHHEEEEEEEEEEEC--------------CCSSSSTTHHHHHHHHTTEEEEEEEECTTT
T ss_pred CC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCc-------ccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence 43 444444 45666699999999987322110 000000112245667888999999999888654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=134.91 Aligned_cols=136 Identities=15% Similarity=0.201 Sum_probs=102.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++.... +++++.+|+.+.+.++++||+|+++..+++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 6789999999999999999998 679999999999999999875422 488999999887766678999999988887
Q ss_pred -----cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 188 -----WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 188 -----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..+...+++++.++|+|||.++++......+ ...+...+. ++..+ ++.||++.+..+.++
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~--~~~l~~~f~------~v~~l-~~~gF~Vl~a~~~~~ 375 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKY--EPLLEEKFG------AFQTL-KVAEYKVLFAEKRGR 375 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCH--HHHHHHHHS------CCEEE-EESSSEEEEEECC--
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCCh--HHHHHHhhc------cEEEE-eCCCEEEEEEEEecc
Confidence 3445689999999999999999986544321 111111111 11123 667887777766544
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=126.14 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=84.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---------CCCCCceEEEcCCCC-CC--CCCCCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---------EPLKECKIVEGDAED-LP--FPTDYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---------~~~~~v~~~~~d~~~-l~--~~~~~~D 177 (290)
++.+|||||||+|.++..+++..|+..++|+|+|+.+++.|+++ ....++.++.+|+.+ ++ +++++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 56799999999999999999998889999999999999988754 224579999999986 55 6778899
Q ss_pred EEEecCcccccCC--------HHHHHHHHHhccCCCCEEEEEcc
Q 022929 178 RYVSAGSIEYWPD--------PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 178 ~i~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.|++...-.+... ...+++++.++|+|||.+++.+.
T Consensus 126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 9987544322211 13699999999999999998764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=130.69 Aligned_cols=133 Identities=19% Similarity=0.178 Sum_probs=102.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|.++..+++..++.+++|+|+|+.+++.|+++. .++.+...|+.++++++++||+|++..+..
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~--- 159 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--PQVTFCVASSHRLPFSDTSMDAIIRIYAPC--- 159 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--TTSEEEECCTTSCSBCTTCEEEEEEESCCC---
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--CCcEEEEcchhhCCCCCCceeEEEEeCChh---
Confidence 678999999999999999999877789999999999999999886 468899999998888888899999876633
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
.++++.++|+|||.+++.++......... ...+........ ..+..+||++++.+.+.
T Consensus 160 ----~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~gf~~~~~~~~~ 217 (269)
T 1p91_A 160 ----KAEELARVVKPGGWVITATPGPRHLMELK--GLIYNEVHLHAP--HAEQLEGFTLQQSAELC 217 (269)
T ss_dssp ----CHHHHHHHEEEEEEEEEEEECTTTTHHHH--TTTCSSCCCCCC--CCCCCTTEEEEEEEEEE
T ss_pred ----hHHHHHHhcCCCcEEEEEEcCHHHHHHHH--HHhhcccccccc--hhhHhcCCcEEEEEEEE
Confidence 57899999999999999987765432211 111111100000 24456799988877664
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-17 Score=136.58 Aligned_cols=178 Identities=10% Similarity=-0.030 Sum_probs=113.0
Q ss_pred HHHhHHhHhhhcccCCC----cccHHHHHhhccccCCC-CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHH
Q 022929 75 WFYRFLSIVYDHVINPG----HWTEDMRDDALEPADLS-NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149 (290)
Q Consensus 75 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~ 149 (290)
.|++....+....+.|+ +.+..+...++...... .++.+|||+|||+|.++..++...++.+++|+|+|+.+++.
T Consensus 25 ~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~ 104 (254)
T 2h00_A 25 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY 104 (254)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred HcCCeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 34444444445555554 34455555555544321 25789999999999999999888667899999999999999
Q ss_pred HhhhCC----CCCceEEEcCCCCC---CCC---CCCccEEEecCcccccC---------------CHHHHHHHHHhccCC
Q 022929 150 AKQKEP----LKECKIVEGDAEDL---PFP---TDYADRYVSAGSIEYWP---------------DPQRGIREAYRVLKL 204 (290)
Q Consensus 150 a~~~~~----~~~v~~~~~d~~~l---~~~---~~~~D~i~~~~~l~~~~---------------~~~~~l~~~~~~L~p 204 (290)
|+++.. .++++++++|+.+. +++ +++||+|+++...++.. ....++.++.++|||
T Consensus 105 a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp 184 (254)
T 2h00_A 105 AKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE 184 (254)
T ss_dssp HHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHH
T ss_pred HHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec
Confidence 998742 23489999997652 344 25799999985544332 012456788899999
Q ss_pred CCEEEEEccCCCchhHhhhhHHH------hhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 205 GGKACIIGPVYPTFWLSRYFADV------WMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 205 gG~l~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
||.+.+....... ........ .....+.+++.++|+++||+.+++..+
T Consensus 185 gG~l~~~~~~~~~--~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 185 GGELEFVKRIIHD--SLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp HTHHHHHHHHHHH--HHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEEEHHHHHH--HHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEE
Confidence 9988765431110 00000000 011234578999999999998887765
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-16 Score=134.06 Aligned_cols=143 Identities=20% Similarity=0.175 Sum_probs=112.5
Q ss_pred hHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCH
Q 022929 65 RFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP 144 (290)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~ 144 (290)
.+.++..+...||+....+....+.|++.++.+.+.+++.+... ++.+|||+|||+|.++..+++. ++.+|+|+|+|+
T Consensus 79 ~p~~yi~g~~~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~-~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~ 156 (284)
T 1nv8_A 79 YPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY-GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSS 156 (284)
T ss_dssp CCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH-TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCH
T ss_pred CCCeEEeeeeEECCeEEEeCCCceecChhHHHHHHHHHHHhccc-CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCH
Confidence 45566666667777777777788889999999988888765432 5679999999999999999999 889999999999
Q ss_pred HHHHHHhhhCC---C-CCceEEEcCCCCCCCCCCCc---cEEEec------------CcccccCC--------HHHHHHH
Q 022929 145 HQLAKAKQKEP---L-KECKIVEGDAEDLPFPTDYA---DRYVSA------------GSIEYWPD--------PQRGIRE 197 (290)
Q Consensus 145 ~~~~~a~~~~~---~-~~v~~~~~d~~~l~~~~~~~---D~i~~~------------~~l~~~~~--------~~~~l~~ 197 (290)
.+++.|+++.. . ++++++++|+.+ +++ ++| |+|+++ .+. |.+. ...++++
T Consensus 157 ~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~ 233 (284)
T 1nv8_A 157 KAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYRE 233 (284)
T ss_dssp HHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHH
Confidence 99999998743 2 248999999976 333 468 999996 222 3322 1268999
Q ss_pred HH-hccCCCCEEEEEc
Q 022929 198 AY-RVLKLGGKACIIG 212 (290)
Q Consensus 198 ~~-~~L~pgG~l~i~~ 212 (290)
+. +.|+|||.+++..
T Consensus 234 i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 234 FFGRYDTSGKIVLMEI 249 (284)
T ss_dssp HHHHCCCTTCEEEEEC
T ss_pred HHHhcCCCCCEEEEEE
Confidence 99 9999999999864
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=127.08 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
.++.+|||||||+|.++..++...++.+|+|+|+|+++++.|+++.. ..+++++++|+.+++ +++||+|++...
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~- 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL- 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT-
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC-
Confidence 48999999999999876555455568999999999999999998732 268999999998875 567999998654
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.++..++++++.++|||||.+++.+.
T Consensus 198 --~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 --AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 57888999999999999999998763
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=136.38 Aligned_cols=120 Identities=17% Similarity=0.272 Sum_probs=96.0
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC------------CCCCceEE
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------PLKECKIV 162 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------------~~~~v~~~ 162 (290)
......+++.+... ++.+|||||||+|.++..++...+..+++|+|+|+.+++.|+++. ...+++|+
T Consensus 159 ~~~i~~il~~l~l~-~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi 237 (438)
T 3uwp_A 159 FDLVAQMIDEIKMT-DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 237 (438)
T ss_dssp HHHHHHHHHHHCCC-TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEE
T ss_pred HHHHHHHHHhcCCC-CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 34455666666554 889999999999999999998876667999999999999887642 12579999
Q ss_pred EcCCCCCCCCC--CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 163 EGDAEDLPFPT--DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 163 ~~d~~~l~~~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
++|+.++++.+ ..||+|++++.+ +.++....|.++.+.|||||.|++.+...+
T Consensus 238 ~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 238 RGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp ECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred ECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 99999887643 359999998776 456777888999999999999999865543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-16 Score=125.27 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=100.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC-CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP-FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~-~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.|+++... .+++++++|+.+++ +.+++||+|++..
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 78899999999999999999985 457999999999999999987432 47899999987765 5557899999876
Q ss_pred cccc---------cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 184 SIEY---------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 184 ~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.+.. ..+...+++++.++|+|||.+++............. . ...++...+...+|++.....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~-~-------~~~~~~~~l~~~~~~v~~~~~~ 173 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEK-E-------KVLEFLKGVDQKKFIVQRTDFI 173 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHH-H-------HHHHHHTTSCTTTEEEEEEEET
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHH-H-------HHHHHHHhCCCCcEEEEEEEec
Confidence 5411 112357999999999999999988643221100000 0 1233444445567888777665
Q ss_pred Cc
Q 022929 255 GP 256 (290)
Q Consensus 255 ~~ 256 (290)
..
T Consensus 174 ~~ 175 (197)
T 3eey_A 174 NQ 175 (197)
T ss_dssp TC
T ss_pred cC
Confidence 43
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=122.57 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=87.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC--CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~--~~~~~~D~i~~~~~ 184 (290)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++.. ..+++++++|+.+++ +++++||+|++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 6789999999999999988775 45689999999999999998742 247899999987653 34567999999888
Q ss_pred cccc-CCHHHHHHHHHh--ccCCCCEEEEEccCC
Q 022929 185 IEYW-PDPQRGIREAYR--VLKLGGKACIIGPVY 215 (290)
Q Consensus 185 l~~~-~~~~~~l~~~~~--~L~pgG~l~i~~~~~ 215 (290)
+++. ++...+++.+.+ +|+|||.+++.....
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 7764 567789999999 999999999976543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-16 Score=130.63 Aligned_cols=145 Identities=21% Similarity=0.129 Sum_probs=94.0
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------CCceEEE-cCCCCCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVE-GDAEDLPFP 172 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~v~~~~-~d~~~l~~~ 172 (290)
.+++.+....++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.++++... .++.+.. .|+..
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~---- 101 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ---- 101 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS----
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc----
Confidence 34444444446789999999999999999988 336999999999999998775431 1222222 22221
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-hh------HHHhhcCCCHHHHHHHHHHCC
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-YF------ADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~ll~~aG 245 (290)
..+|.+.+..++.++ ..+++++.++|||||.+++.. .+.+.... .. .+......+.+++.++++++|
T Consensus 102 -~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aG 175 (232)
T 3opn_A 102 -GRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLG 175 (232)
T ss_dssp -CCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCC
Confidence 124554444444433 579999999999999998863 11111000 00 011111236789999999999
Q ss_pred CcEEEEEEcC
Q 022929 246 FKDVQLKRIG 255 (290)
Q Consensus 246 f~~v~~~~~~ 255 (290)
|+++.+...+
T Consensus 176 f~v~~~~~~p 185 (232)
T 3opn_A 176 FSVKGLTFSP 185 (232)
T ss_dssp EEEEEEEECS
T ss_pred CEEEEEEEcc
Confidence 9988887654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=128.67 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=101.2
Q ss_pred CCCEEEEEcCcc--chhHHHH-HhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC----CC--CCCcc
Q 022929 110 RNMLVVDVGGGT--GFTTLGI-VKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP----FP--TDYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~--G~~~~~l-~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~----~~--~~~~D 177 (290)
...+|||||||. +..+..+ ....|+.+|+++|.|+.|++.|++++.. .+++++++|+.+++ .+ .+.||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 346899999996 3344444 4456889999999999999999987543 35899999998742 01 23355
Q ss_pred -----EEEecCcccccCC---HHHHHHHHHhccCCCCEEEEEccCCCch-hHhhhhHHHh------hcCCCHHHHHHHHH
Q 022929 178 -----RYVSAGSIEYWPD---PQRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFADVW------MLFPKEEEYIEWFQ 242 (290)
Q Consensus 178 -----~i~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~ll~ 242 (290)
.|+++.+|||+++ +..+++++.+.|+|||+|++.+...+.. .........+ ..+++.+++..+|.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~f~ 237 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEFFE 237 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHTTT
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHHhC
Confidence 6889999999988 4689999999999999999987655421 1111111111 23579999999995
Q ss_pred HCCCcEEE
Q 022929 243 KAGFKDVQ 250 (290)
Q Consensus 243 ~aGf~~v~ 250 (290)
||++++
T Consensus 238 --Glelve 243 (277)
T 3giw_A 238 --GLELVE 243 (277)
T ss_dssp --TSEECT
T ss_pred --CCcccC
Confidence 998654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-14 Score=117.56 Aligned_cols=136 Identities=18% Similarity=0.067 Sum_probs=97.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCC---CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLP---FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~---~~~~~~D~i~~~~~ 184 (290)
++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.++++... .+++++.+|+.+.. ...++||+|++...
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 152 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence 78899999999999999999885 357999999999999888776543 57999999997631 12347999997654
Q ss_pred ccccCCHH-HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 185 IEYWPDPQ-RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 185 l~~~~~~~-~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.++.. .+++++.++|+|||.+++..... ......... ....+++.++ +++ |++++...+.+
T Consensus 153 ---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~-----~~~~~~l~~l-~~~-f~~~~~~~~~~ 214 (227)
T 1g8a_A 153 ---QPTQAKILIDNAEVYLKRGGYGMIAVKSR-SIDVTKEPE-----QVFREVEREL-SEY-FEVIERLNLEP 214 (227)
T ss_dssp ---STTHHHHHHHHHHHHEEEEEEEEEEEEGG-GTCTTSCHH-----HHHHHHHHHH-HTT-SEEEEEEECTT
T ss_pred ---CHhHHHHHHHHHHHhcCCCCEEEEEEecC-CCCCCCChh-----hhhHHHHHHH-Hhh-ceeeeEeccCc
Confidence 23333 45999999999999998872211 100000000 0134567666 777 99998888754
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=129.73 Aligned_cols=124 Identities=22% Similarity=0.240 Sum_probs=99.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC--ceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++...++ +++..+|+.+ ++++++||+|+++...++
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL 196 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHHH
Confidence 7889999999999999998887 4499999999999999998743222 7888888865 234567999998765443
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
...+++++.++|+|||.+++.+.... +.+++.+.++++||+++++...+
T Consensus 197 ---~~~~l~~~~~~LkpgG~lils~~~~~----------------~~~~v~~~l~~~Gf~~~~~~~~~ 245 (254)
T 2nxc_A 197 ---HAALAPRYREALVPGGRALLTGILKD----------------RAPLVREAMAGAGFRPLEEAAEG 245 (254)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHHTTCEEEEEEEET
T ss_pred ---HHHHHHHHHHHcCCCCEEEEEeeccC----------------CHHHHHHHHHHCCCEEEEEeccC
Confidence 45799999999999999999754321 36789999999999998877643
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=124.63 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=105.4
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeC-CHHHHHHHhhhC-----CC--------CCc
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ-SPHQLAKAKQKE-----PL--------KEC 159 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~-s~~~~~~a~~~~-----~~--------~~v 159 (290)
++.+.+.+...... .++.+|||+|||+|.++..+++. +..+|+++|+ |+.+++.|+++. .. .++
T Consensus 64 ~~~l~~~l~~~~~~-~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v 141 (281)
T 3bzb_A 64 ARALADTLCWQPEL-IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP 141 (281)
T ss_dssp HHHHHHHHHHCGGG-TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred HHHHHHHHHhcchh-cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence 34445554444332 26789999999999999988886 3359999999 899999999876 32 257
Q ss_pred eEEEcCCCCCC--C----CCCCccEEEecCcccccCCHHHHHHHHHhccC---C--CCEEEEEccCCCchhHhhhhHHHh
Q 022929 160 KIVEGDAEDLP--F----PTDYADRYVSAGSIEYWPDPQRGIREAYRVLK---L--GGKACIIGPVYPTFWLSRYFADVW 228 (290)
Q Consensus 160 ~~~~~d~~~l~--~----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~---p--gG~l~i~~~~~~~~~~~~~~~~~~ 228 (290)
++...|..+.. + .+++||+|++..++++.++...+++.+.++|+ | ||.+++.........
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~--------- 212 (281)
T 3bzb_A 142 KVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHL--------- 212 (281)
T ss_dssp EEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------------
T ss_pred EEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeeccc---------
Confidence 77766654421 1 35679999999999999899999999999999 9 998877533221100
Q ss_pred hcCCCHHHHHHHHHHCC-CcEEEEEE
Q 022929 229 MLFPKEEEYIEWFQKAG-FKDVQLKR 253 (290)
Q Consensus 229 ~~~~~~~~~~~ll~~aG-f~~v~~~~ 253 (290)
.....++.+.++++| |++.++..
T Consensus 213 --~~~~~~~~~~l~~~G~f~v~~~~~ 236 (281)
T 3bzb_A 213 --AERDLAFFRLVNADGALIAEPWLS 236 (281)
T ss_dssp -----CTHHHHHHHHSTTEEEEEEEC
T ss_pred --chhHHHHHHHHHhcCCEEEEEecc
Confidence 012356777889999 99887754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-15 Score=125.11 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=86.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCC-C--CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDL-P--FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l-~--~~~~~~D~i~~~~ 183 (290)
++.+|||||||+|.++..+++..|+..|+|+|+|+.+++.|+++. ...|+.++.+|+.++ + +++++||.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 578999999999999999999988899999999999999998773 345799999998763 3 6678899999875
Q ss_pred cccccCCH--------HHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYWPDP--------QRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
...+.... ..+++++.++|||||.+++.+.
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 54433222 2599999999999999999864
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-15 Score=128.96 Aligned_cols=150 Identities=17% Similarity=0.089 Sum_probs=99.8
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEE-EcCCCCCC---CCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIV-EGDAEDLP---FPTDY 175 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~-~~d~~~l~---~~~~~ 175 (290)
.+++.+....++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.+.++. .++... ..|+..++ ++..+
T Consensus 75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~--~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQD--DRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTC--TTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--cccceecccCceecchhhCCCCC
Confidence 34444444446789999999999999999887 4569999999999998854432 122222 22332222 33445
Q ss_pred ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc---cCCCchhHh--hhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG---PVYPTFWLS--RYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
||+|++..+++++ ..++.++.++|+|||.+++.. +-....... ....+...+....+++.++++++||.+..
T Consensus 152 fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~ 228 (291)
T 3hp7_A 152 PSFASIDVSFISL---NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKG 228 (291)
T ss_dssp CSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999998877654 679999999999999998862 111111100 01111111223678999999999999888
Q ss_pred EEEcC
Q 022929 251 LKRIG 255 (290)
Q Consensus 251 ~~~~~ 255 (290)
+...+
T Consensus 229 ~~~sp 233 (291)
T 3hp7_A 229 LDFSP 233 (291)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 77654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-15 Score=135.77 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=99.7
Q ss_pred HHHHhHHhHhhhc--ccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh
Q 022929 74 FWFYRFLSIVYDH--VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151 (290)
Q Consensus 74 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 151 (290)
..||+.++..|.. ++.+......+...++..... .++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+
T Consensus 26 ~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~-~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~ 102 (376)
T 3r0q_C 26 AQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHH-FEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHAR 102 (376)
T ss_dssp --CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTT-TTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHH
T ss_pred HHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhcccc-CCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHH
Confidence 3455555555543 344443445555555554443 37899999999999999999988 34599999999 9999988
Q ss_pred hhCC----CCCceEEEcCCCCCCCCCCCccEEEecCccccc---CCHHHHHHHHHhccCCCCEEEEE
Q 022929 152 QKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 152 ~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
++.. ..+++++.+|+.+++++ ++||+|++..+.+++ .....+++.+.++|+|||.+++.
T Consensus 103 ~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 103 ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 7642 24589999999988776 679999996655544 55778999999999999999764
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-15 Score=134.26 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=84.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCc-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS- 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~- 184 (290)
++.+|||||||+|.++..+++. +..+|+|+|+| ++++.|+++.. .++++++.+|+.++++++++||+|++..+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 7899999999999999999988 55699999999 58888887632 23489999999998888888999999765
Q ss_pred --ccccCCHHHHHHHHHhccCCCCEEEE
Q 022929 185 --IEYWPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 185 --l~~~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
+.+..+...+++.+.++|||||.++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 44557788999999999999999864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.6e-16 Score=123.52 Aligned_cols=139 Identities=10% Similarity=-0.059 Sum_probs=98.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc--eEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--KIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v--~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+..+|||+|||+|.++..++...|+.+|+++|+|+.+++.+++++...++ .+...|.... .+.++||+|++..++|+
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHh
Confidence 67899999999999999999998899999999999999999988543221 2334666443 34567999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
+++.+..+.++.+.|+|||.++-.. ...-......+.. .-...|++.+.+ .+.+++..+++.
T Consensus 128 L~~~~~al~~v~~~L~pggvfISfp-tksl~Gr~~gm~~-----~Y~~~~~~~~~~-~~~~~~~~~~~n 189 (200)
T 3fzg_A 128 LKQQDVNILDFLQLFHTQNFVISFP-IKSLSGKEKGMEE-----NYQLWFESFTKG-WIKILDSKVIGN 189 (200)
T ss_dssp HHHTTCCHHHHHHTCEEEEEEEEEE-CCCCC--CTTCCC-----CHHHHHHHHTTT-TSCEEEEEEETT
T ss_pred hhhhHHHHHHHHHHhCCCCEEEEeC-hHHhcCCCcchhh-----hHHHHHHHhccC-cceeeeeeeeCc
Confidence 9666667779999999999886554 1110000001111 113567777744 555676666654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=132.45 Aligned_cols=110 Identities=24% Similarity=0.285 Sum_probs=88.6
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~ 172 (290)
+...+...... .++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++.. ..+++++.+|+.+++++
T Consensus 52 ~~~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (340)
T 2fyt_A 52 YRDFIYQNPHI-FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP 128 (340)
T ss_dssp HHHHHHHCGGG-TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS
T ss_pred HHHHHHhhhhh-cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC
Confidence 33444444333 37889999999999999999887 446999999996 8888887632 25789999999998888
Q ss_pred CCCccEEEecC---cccccCCHHHHHHHHHhccCCCCEEE
Q 022929 173 TDYADRYVSAG---SIEYWPDPQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 173 ~~~~D~i~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~ 209 (290)
+++||+|++.. .+.+..+...+++++.++|||||.++
T Consensus 129 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 129 VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 77899999876 45555667789999999999999987
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=118.55 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=91.0
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFP 172 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~ 172 (290)
.+...++..+.. .++.+|||||||+|.++..+++. +.+|+++|+|+.+++.|+++. ...+++++.+|..+....
T Consensus 64 ~~~~~~~~~l~~-~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 140 (210)
T 3lbf_A 64 YMVARMTELLEL-TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA 140 (210)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcCC-CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc
Confidence 344455555544 37899999999999999999998 689999999999999999874 234789999999776555
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+++||+|++..+++++++ .+.++|+|||.+++....
T Consensus 141 ~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 678999999999999885 588999999999997654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=123.06 Aligned_cols=125 Identities=19% Similarity=0.153 Sum_probs=99.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..+++.... +|+|+|+|+.+++.|+++.. .++++++++|+.+++. +++||+|++...
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p- 201 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV- 201 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc-
Confidence 6899999999999999999998433 79999999999999998743 2348899999988765 667999998533
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
.....+++++.++|+|||.+++.+....... .-...+++.+.++++||++..
T Consensus 202 ---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 ---VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM----------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT----------TTTTHHHHHHHHHHTTCEEEE
T ss_pred ---hhHHHHHHHHHHHCCCCeEEEEEEeeccccc----------cccHHHHHHHHHHHcCCeeEE
Confidence 3345789999999999999999776532110 012457888999999998766
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=117.04 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=99.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCC-CccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTD-YADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~-~~D~i~~~~~ 184 (290)
++.+|+|||||+|.+++.+++..|..+|+++|+++.+++.|+++.. .+++++..+|..+ +++.+ +||+|+...+
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AFEETDQVSVITIAGM 93 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hcccCcCCCEEEEcCC
Confidence 7789999999999999999998777899999999999999998743 2358999999854 22322 5999987654
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
... -...++......|+++|.+++... . ..+.++++|.+.||.+++..-+
T Consensus 94 Gg~--~i~~Il~~~~~~L~~~~~lVlq~~-~-----------------~~~~vr~~L~~~Gf~i~~e~lv 143 (225)
T 3kr9_A 94 GGR--LIARILEEGLGKLANVERLILQPN-N-----------------REDDLRIWLQDHGFQIVAESIL 143 (225)
T ss_dssp CHH--HHHHHHHHTGGGCTTCCEEEEEES-S-----------------CHHHHHHHHHHTTEEEEEEEEE
T ss_pred ChH--HHHHHHHHHHHHhCCCCEEEEECC-C-----------------CHHHHHHHHHHCCCEEEEEEEE
Confidence 321 135789999999999999888643 1 3578899999999998887644
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=118.21 Aligned_cols=126 Identities=10% Similarity=0.051 Sum_probs=101.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.++.+|+|||||+|.+++.+++..+..+|+++|+++.+++.|+++.. .+++++..+|..+...++++||+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 37789999999999999999998667799999999999999998743 24699999999775544446999887655
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.. .-...++......|+++|.+++.... ..+.++++|.+.||.+++..-+
T Consensus 100 Gg--~lI~~IL~~~~~~l~~~~~lIlqp~~------------------~~~~lr~~L~~~Gf~i~~E~lv 149 (230)
T 3lec_A 100 GG--RLIADILNNDIDKLQHVKTLVLQPNN------------------REDDLRKWLAANDFEIVAEDIL 149 (230)
T ss_dssp CH--HHHHHHHHHTGGGGTTCCEEEEEESS------------------CHHHHHHHHHHTTEEEEEEEEE
T ss_pred ch--HHHHHHHHHHHHHhCcCCEEEEECCC------------------ChHHHHHHHHHCCCEEEEEEEE
Confidence 43 12346888899999999999887532 3578999999999998887755
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=114.88 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=95.8
Q ss_pred CCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccE
Q 022929 108 SNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (290)
Q Consensus 108 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~ 178 (290)
..++.+|||+|||+|.++..+++.+ ++.+++++|+++ +++. .++++...|+.+.+ +++++||+
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------VGVDFLQGDFRDELVMKALLERVGDSKVQV 91 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------TTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------CcEEEEEcccccchhhhhhhccCCCCceeE
Confidence 3478899999999999999999985 468999999998 6432 57899999998865 66678999
Q ss_pred EEecCcccccCCH-----------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 179 YVSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 179 i~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
|++...+++..+. ..+++++.++|+|||.+++...... +..++.+.+++. |.
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~~~~-~~ 154 (180)
T 1ej0_A 92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE----------------GFDEYLREIRSL-FT 154 (180)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST----------------THHHHHHHHHHH-EE
T ss_pred EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC----------------cHHHHHHHHHHh-hh
Confidence 9999988887765 6899999999999999998765443 234566666664 76
Q ss_pred EEEEE
Q 022929 248 DVQLK 252 (290)
Q Consensus 248 ~v~~~ 252 (290)
.+++.
T Consensus 155 ~~~~~ 159 (180)
T 1ej0_A 155 KVKVR 159 (180)
T ss_dssp EEEEE
T ss_pred hEEee
Confidence 66554
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-15 Score=119.02 Aligned_cols=119 Identities=11% Similarity=0.030 Sum_probs=87.6
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCC-C
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-L 169 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~-l 169 (290)
+.+...+++.+....++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++... .+++++.+|+.+ +
T Consensus 16 ~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 16 DKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI 94 (177)
T ss_dssp --CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH
Confidence 3344444444432236789999999999999999887 557999999999999999987532 358899999866 3
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHH--hccCCCCEEEEEccCC
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAY--RVLKLGGKACIIGPVY 215 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~ 215 (290)
+..+++||+|++...++ .......++.+. ++|+|||.+++.....
T Consensus 95 ~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 95 DCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HhhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 33345699999986653 233456777776 9999999999986554
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=117.90 Aligned_cols=111 Identities=21% Similarity=0.170 Sum_probs=89.9
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC-CceEEEcCCCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-ECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~v~~~~~d~~~l~~~~~ 174 (290)
.+...+++.+.. .++.+|||||||+|.++..+++. +.+|+++|+|+.+++.++++.... +++++.+|+.+....++
T Consensus 57 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~ 133 (231)
T 1vbf_A 57 NLGIFMLDELDL-HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEK 133 (231)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGC
T ss_pred HHHHHHHHhcCC-CCCCEEEEEcCCCCHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCC
Confidence 444455555544 37889999999999999999998 479999999999999999885433 78999999976322356
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+||+|++..++++++ +++.++|+|||.+++.....
T Consensus 134 ~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 134 PYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred CccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 799999999999876 36889999999999986544
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=122.70 Aligned_cols=143 Identities=20% Similarity=0.185 Sum_probs=108.6
Q ss_pred CcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCC
Q 022929 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDA 166 (290)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~ 166 (290)
.+..+.+...++...... ++.+|||+|||+|.++..++... +..+++|+|+|+.+++.|+++.. ..++++.++|+
T Consensus 185 a~l~~~la~~l~~~~~~~-~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~ 263 (354)
T 3tma_A 185 GSLTPVLAQALLRLADAR-PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA 263 (354)
T ss_dssp CSCCHHHHHHHHHHTTCC-TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCG
T ss_pred CCcCHHHHHHHHHHhCCC-CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCCh
Confidence 344556666666655543 78899999999999999999986 66899999999999999998743 22689999999
Q ss_pred CCCCCCCCCccEEEecCcccccC--------CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHH
Q 022929 167 EDLPFPTDYADRYVSAGSIEYWP--------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238 (290)
Q Consensus 167 ~~l~~~~~~~D~i~~~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
.+++.+.+.||+|+++-...... .+..+++++.++|+|||.+++.++ +.+.+.
T Consensus 264 ~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-------------------~~~~~~ 324 (354)
T 3tma_A 264 RHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL-------------------RPALLK 324 (354)
T ss_dssp GGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES-------------------CHHHHH
T ss_pred hhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC-------------------CHHHHH
Confidence 98876666799999964433211 125789999999999999999864 234455
Q ss_pred HHHHHCCCcEEEEEEc
Q 022929 239 EWFQKAGFKDVQLKRI 254 (290)
Q Consensus 239 ~ll~~aGf~~v~~~~~ 254 (290)
++++ .||+..+...+
T Consensus 325 ~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 325 RALP-PGFALRHARVV 339 (354)
T ss_dssp HHCC-TTEEEEEEEEC
T ss_pred HHhh-cCcEEEEEEEE
Confidence 5555 89987766554
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-14 Score=117.57 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=100.5
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.++.+|||||||+|.+++.+++..+..+|+++|+++.+++.|+++.. .+++++..+|..+...++.+||+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 37789999999999999999998666799999999999999998843 24589999999775443335999987554
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.. .-...++.+....|++++.+++.... ..+.++++|.+.||.+++..-+
T Consensus 100 Gg--~lI~~IL~~~~~~L~~~~~lIlq~~~------------------~~~~lr~~L~~~Gf~i~~E~lv 149 (244)
T 3gnl_A 100 GG--TLIRTILEEGAAKLAGVTKLILQPNI------------------AAWQLREWSEQNNWLITSEAIL 149 (244)
T ss_dssp CH--HHHHHHHHHTGGGGTTCCEEEEEESS------------------CHHHHHHHHHHHTEEEEEEEEE
T ss_pred ch--HHHHHHHHHHHHHhCCCCEEEEEcCC------------------ChHHHHHHHHHCCCEEEEEEEE
Confidence 32 11346888999999999999887532 3578899999999998877654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=117.46 Aligned_cols=121 Identities=9% Similarity=0.026 Sum_probs=90.3
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCC
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED 168 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~ 168 (290)
..+.+...+++.+....++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++... .+++++.+|+.+
T Consensus 27 ~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 105 (187)
T 2fhp_A 27 TTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 105 (187)
T ss_dssp CCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence 344454444444422236789999999999999988875 457999999999999999877432 368999999865
Q ss_pred CC----CCCCCccEEEecCcccccCCHHHHHHHH--HhccCCCCEEEEEccCC
Q 022929 169 LP----FPTDYADRYVSAGSIEYWPDPQRGIREA--YRVLKLGGKACIIGPVY 215 (290)
Q Consensus 169 l~----~~~~~~D~i~~~~~l~~~~~~~~~l~~~--~~~L~pgG~l~i~~~~~ 215 (290)
.. ..+++||+|++...++ .......++.+ .++|+|||.+++.....
T Consensus 106 ~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 106 ALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 21 2256799999987743 45566777777 88999999999876554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=127.31 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=89.4
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------CCceEEEcCCCCCCCCCCC
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~v~~~~~d~~~l~~~~~~ 175 (290)
++.+... ++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++... .+++++..|+.+ ++++++
T Consensus 215 l~~l~~~-~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~ 292 (375)
T 4dcm_A 215 MQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFR 292 (375)
T ss_dssp HHTCCCS-CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTC
T ss_pred HHhCccc-CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCC
Confidence 4444332 56899999999999999999998889999999999999999987532 247889999987 566678
Q ss_pred ccEEEecCcccccCC-----HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 176 ADRYVSAGSIEYWPD-----PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
||+|+++..+++... ..++++++.++|+|||.++++.....
T Consensus 293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 999999988875322 23689999999999999999765443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-14 Score=116.83 Aligned_cols=105 Identities=14% Similarity=0.233 Sum_probs=84.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCC-CC-CC----CCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LP-FP----TDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~-l~-~~----~~~~D~ 178 (290)
++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++.. .++++++.+|+.+ ++ +. .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 678999999999999999999764 7899999999999999998642 2358999999743 22 22 257999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
|++....++..+...+++.+ ++|+|||.+++.+...
T Consensus 138 V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 138 VFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 99988777766666777777 9999999998876554
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=120.70 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=83.6
Q ss_pred CCCEEEEEcCccchhHHHHHhh--CCCCeEEEEeCCHHHHHHHhhhCCCC-------C----------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH--VDAKNVTILDQSPHQLAKAKQKEPLK-------E---------------------- 158 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~-------~---------------------- 158 (290)
++.+|||+|||+|.++..+++. .++.+|+|+|+|+.+++.|+++.... +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5689999999999999999987 56789999999999999999764332 1
Q ss_pred ---ce-------------EEEcCCCCCCC-----CCCCccEEEecCcccccCC---------HHHHHHHHHhccCCCCEE
Q 022929 159 ---CK-------------IVEGDAEDLPF-----PTDYADRYVSAGSIEYWPD---------PQRGIREAYRVLKLGGKA 208 (290)
Q Consensus 159 ---v~-------------~~~~d~~~l~~-----~~~~~D~i~~~~~l~~~~~---------~~~~l~~~~~~L~pgG~l 208 (290)
++ +.++|+.+... ...+||+|+++..+.+..+ ...+++++.++|+|||.+
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 56 99999977321 3447999999876554433 347999999999999999
Q ss_pred EEEccC
Q 022929 209 CIIGPV 214 (290)
Q Consensus 209 ~i~~~~ 214 (290)
++....
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 986443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=128.95 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=95.4
Q ss_pred HHhHHhHhhhcccCC-CcccHHHHHhhccccCCCCCCCEEEEEcCc------cchhHHHHHhh-CCCCeEEEEeCCHHHH
Q 022929 76 FYRFLSIVYDHVINP-GHWTEDMRDDALEPADLSNRNMLVVDVGGG------TGFTTLGIVKH-VDAKNVTILDQSPHQL 147 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G------~G~~~~~l~~~-~~~~~v~~vD~s~~~~ 147 (290)
.++..+..|..-... ..+...+.+.++..+. .++.+||||||| +|..+..+++. +|+.+|+|+|+|+.+.
T Consensus 183 ~fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~ 260 (419)
T 3sso_A 183 DLSELSSRYFTPKFGFLHWFTPHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH 260 (419)
T ss_dssp CHHHHHHHTTCTTBSSSCBCHHHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG
T ss_pred cHHHHHHHhCCCcccccchHHHHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh
Confidence 355556666532222 2333444555555543 257899999999 66666666654 5789999999999973
Q ss_pred HHHhhhCCCCCceEEEcCCCCCCCC------CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 148 AKAKQKEPLKECKIVEGDAEDLPFP------TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 148 ~~a~~~~~~~~v~~~~~d~~~l~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
....+++++++|+.++++. +++||+|++.. .++..+....++++.++|||||.+++.+..
T Consensus 261 ------~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 261 ------VDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp ------GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ------hcCCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 1346899999999988766 57899999875 466677789999999999999999998765
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-14 Score=127.37 Aligned_cols=120 Identities=11% Similarity=0.092 Sum_probs=92.3
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHH-------hhhC---C--CCCceEE
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-------KQKE---P--LKECKIV 162 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a-------~~~~---~--~~~v~~~ 162 (290)
..+...+++.+... ++.+|||||||+|.++..+++..+..+|+|+|+++.+++.| +++. . ..+++++
T Consensus 228 p~~v~~ml~~l~l~-~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i 306 (433)
T 1u2z_A 228 PNFLSDVYQQCQLK-KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 306 (433)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred HHHHHHHHHhcCCC-CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence 44555666666543 78999999999999999999987667899999999998888 6552 2 3578898
Q ss_pred EcCCCCC--CC--CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 163 EGDAEDL--PF--PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 163 ~~d~~~l--~~--~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.+|.... ++ ..++||+|++++++ +.++....++++.+.|||||.+++.++..+
T Consensus 307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 307 LKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred EcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 8765321 12 23579999998776 446677889999999999999999865543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=115.23 Aligned_cols=130 Identities=16% Similarity=0.165 Sum_probs=99.8
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~ 175 (290)
.++..... .++.+|||+|||+|.++..+++. +.+++++|+++.+++.|+++.. ..++++...|+.+...++++
T Consensus 82 ~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLNL-NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcCC-CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 34444443 37889999999999999999998 7899999999999999998732 25788999999874435667
Q ss_pred ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
||+|++ +.+++..+++++.++|+|||.+++..+... ...++.+.+++. |..++....
T Consensus 159 ~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~l~~~-f~~~~~~~~ 215 (248)
T 2yvl_A 159 FHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPTAN----------------QVIKLLESIENY-FGNLEVVEI 215 (248)
T ss_dssp BSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESSHH----------------HHHHHHHHSTTT-EEEEEEEEE
T ss_pred ccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHhh-CCcceEEEe
Confidence 999997 345677899999999999999999875421 124555666666 876666544
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=113.27 Aligned_cols=118 Identities=13% Similarity=0.184 Sum_probs=88.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC--CCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----------------
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---------------- 170 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---------------- 170 (290)
.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.. ...+++++++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~ 92 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNN 92 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------CCTTCEEEECCTTTTSSCCC-----------C
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------CCCCceEEEccccchhhhhhccccccccccch
Confidence 4778999999999999999999887 6899999999831 2357899999998765
Q ss_pred ---------CCCCCccEEEecCcccccC----CH-------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhc
Q 022929 171 ---------FPTDYADRYVSAGSIEYWP----DP-------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML 230 (290)
Q Consensus 171 ---------~~~~~~D~i~~~~~l~~~~----~~-------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 230 (290)
+++.+||+|++...+++.. +. ..+++++.++|+|||.+++......
T Consensus 93 ~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~-------------- 158 (201)
T 2plw_A 93 SVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS-------------- 158 (201)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST--------------
T ss_pred hhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC--------------
Confidence 4566899999988776542 11 1378899999999999988643321
Q ss_pred CCCHHHHHHHHHHCCCcEEEE
Q 022929 231 FPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 231 ~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+..++...++. .|..+.+
T Consensus 159 --~~~~l~~~l~~-~f~~v~~ 176 (201)
T 2plw_A 159 --QTNNLKTYLKG-MFQLVHT 176 (201)
T ss_dssp --THHHHHHHHHT-TEEEEEE
T ss_pred --CHHHHHHHHHH-HHheEEE
Confidence 23456666665 4665544
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-14 Score=118.85 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=83.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---C--CCceEEEcCCCCCC--CCCCC-ccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L--KECKIVEGDAEDLP--FPTDY-ADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~--~~v~~~~~d~~~l~--~~~~~-~D~i~~ 181 (290)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++.. . .+++++.+|+.++. ..+++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 56899999999999999877762 4699999999999999998742 2 47899999986542 23568 999999
Q ss_pred cCcccccCCHHHHHHHH--HhccCCCCEEEEEccCC
Q 022929 182 AGSIEYWPDPQRGIREA--YRVLKLGGKACIIGPVY 215 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~--~~~L~pgG~l~i~~~~~ 215 (290)
...++ ..+...+++.+ .++|+|||.+++.....
T Consensus 132 ~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 87754 55667788888 67899999999876543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-14 Score=118.43 Aligned_cols=122 Identities=12% Similarity=0.031 Sum_probs=94.0
Q ss_pred CCCEEEEEcCccchhHHHHHhh----CCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC---CCC-CCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL---PFP-TDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l---~~~-~~~~D~i~~ 181 (290)
++.+|||||||+|..+..+++. .++.+|+++|+|+.+++.|+.. ..+++++++|+.+. +.. +.+||+|++
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~--~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--MENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--CTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc--CCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 4679999999999999999987 5678999999999999888743 35799999999874 433 336999998
Q ss_pred cCcccccCCHHHHHHHHHh-ccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHC--CCcE
Q 022929 182 AGSIEYWPDPQRGIREAYR-VLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA--GFKD 248 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~-~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a--Gf~~ 248 (290)
... | .+...+++++.+ +|||||.+++.+.. ..... ++.+.+.+++++. +|++
T Consensus 159 d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~~--------~~~~~----~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 159 DNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDMI--------PYWYR----YAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp ESS--C-SSHHHHHHHHHHHTCCTTCEEEECSCH--------HHHHH----HCHHHHHHHHHTTTTTEEE
T ss_pred CCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeCc--------ccccc----cCHHHHHHHHHhCcccEEE
Confidence 665 2 367789999997 99999999997651 00001 1345788888887 5754
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-14 Score=133.92 Aligned_cols=119 Identities=17% Similarity=0.195 Sum_probs=92.0
Q ss_pred cCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEE
Q 022929 88 INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVE 163 (290)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~ 163 (290)
+.+...++.+...+++.+... ++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++.. ..+++++.
T Consensus 137 L~d~~~t~~~~~~il~~l~~~-~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~ 213 (480)
T 3b3j_A 137 MQDYVRTGTYQRAILQNHTDF-KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIP 213 (480)
T ss_dssp HHHHHHHHHHHHHHHHTGGGT-TTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEE
T ss_pred hcChHhHHHHHHHHHHhhhhc-CCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEE
Confidence 333344555566666655433 6789999999999999998885 567999999998 8888876632 25799999
Q ss_pred cCCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEE
Q 022929 164 GDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 164 ~d~~~l~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i 210 (290)
+|+.+++++ ++||+|++..+++++.+. ...+.++.++|+|||.+++
T Consensus 214 ~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 214 GKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp SCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred CchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999887765 469999998877777544 4677788999999999985
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=121.76 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=90.1
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~ 171 (290)
.+...++..+... ++.+|||||||+|.++..+++..+ ..+|+++|+|+++++.|+++. ...++++..+|+.+.+.
T Consensus 62 ~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~ 140 (317)
T 1dl5_A 62 SLMALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP 140 (317)
T ss_dssp HHHHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred HHHHHHHHhcCCC-CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc
Confidence 4455555555443 789999999999999999998865 367999999999999999874 23468999999977544
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.+++||+|++..++++++ +++.+.|||||.+++...
T Consensus 141 ~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 141 EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred cCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 456799999999999887 578889999999999754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-14 Score=123.70 Aligned_cols=99 Identities=26% Similarity=0.292 Sum_probs=82.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCc-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS- 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~- 184 (290)
++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++.. .++++++.+|+.++++++++||+|++..+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 6789999999999999999887 45699999999 58888887632 24689999999998887778999999754
Q ss_pred --ccccCCHHHHHHHHHhccCCCCEEEE
Q 022929 185 --IEYWPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 185 --l~~~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
+.+......++.++.++|+|||.++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 44556678899999999999999973
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=117.17 Aligned_cols=104 Identities=15% Similarity=0.206 Sum_probs=82.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-----------CCCCceEEEcCCCC-CC--CCCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----------PLKECKIVEGDAED-LP--FPTDY 175 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~v~~~~~d~~~-l~--~~~~~ 175 (290)
++.+|||||||+|.++..+++..+...++|+|+|+.+++.++++. ...++.++.+|+.+ ++ ++.++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 678999999999999999999987789999999999999987652 33579999999976 55 66778
Q ss_pred ccEEEecCcccccCC--------HHHHHHHHHhccCCCCEEEEEcc
Q 022929 176 ADRYVSAGSIEYWPD--------PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+|.|++...-.+... ...+++++.++|+|||.+++.+.
T Consensus 129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 999985432111100 14799999999999999998653
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-14 Score=125.30 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=89.1
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~ 170 (290)
..+...+++.+... ++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++.. ..+++++.+|+.+++
T Consensus 36 ~~y~~~i~~~l~~~-~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 112 (348)
T 2y1w_A 36 GTYQRAILQNHTDF-KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS 112 (348)
T ss_dssp HHHHHHHHHTGGGT-TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred HHHHHHHHhccccC-CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC
Confidence 34445555555443 7889999999999999999886 457999999996 7788876532 257999999999887
Q ss_pred CCCCCccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEE
Q 022929 171 FPTDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~ 211 (290)
++ ++||+|++..+++|+.. ....+.++.++|||||.+++.
T Consensus 113 ~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 113 LP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 65 46999999988887753 457888899999999999854
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.9e-14 Score=124.25 Aligned_cols=130 Identities=22% Similarity=0.223 Sum_probs=95.5
Q ss_pred HHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh--
Q 022929 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-- 153 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-- 153 (290)
+|++.. ++..++.+...+..+...+....... ++++|||||||+|.++..+++. +..+|+|||.|+ +++.|++.
T Consensus 51 sY~~~~-iH~~ML~D~~Rt~aY~~Ai~~~~~~~-~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~ 126 (376)
T 4hc4_A 51 CYSDVS-VHEEMIADRVRTDAYRLGILRNWAAL-RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVR 126 (376)
T ss_dssp CHHHHH-HHHHHHHCHHHHHHHHHHHHTTHHHH-TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHH
T ss_pred hccCcH-HHHHHhCCHHHHHHHHHHHHhCHHhc-CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHH
Confidence 344433 44455665555566665555433322 7899999999999998887776 457899999985 66777654
Q ss_pred --CCCCCceEEEcCCCCCCCCCCCccEEEec---CcccccCCHHHHHHHHHhccCCCCEEEE
Q 022929 154 --EPLKECKIVEGDAEDLPFPTDYADRYVSA---GSIEYWPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 154 --~~~~~v~~~~~d~~~l~~~~~~~D~i~~~---~~l~~~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
....+++++.+|++++.+++ ++|+|++. ..+.+......++....++|+|||.++-
T Consensus 127 ~n~~~~~i~~i~~~~~~~~lpe-~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 127 FNGLEDRVHVLPGPVETVELPE-QVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp HTTCTTTEEEEESCTTTCCCSS-CEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred HcCCCceEEEEeeeeeeecCCc-cccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 33456999999999988775 59999984 4455666778899999999999998764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=113.59 Aligned_cols=112 Identities=23% Similarity=0.233 Sum_probs=88.2
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~ 171 (290)
.+...++..+.. .++.+|||||||+|.++..+++.. +..+|+++|+|+.+++.++++.. ..++++..+|+.....
T Consensus 64 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 64 HMVGMMCELLDL-KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE 142 (215)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG
T ss_pred HHHHHHHHhhCC-CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 344445554443 378899999999999999999986 34799999999999999987642 2468899999854222
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
..++||+|++..++++++ +++.++|+|||.+++....
T Consensus 143 ~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred CCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence 256799999999999877 4889999999999987643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-14 Score=115.75 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=82.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCC-CCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-LPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~-l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|+++.. ..+++++++|+.+ ++..+++||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 56899999999999999877762 3599999999999999998743 2478999999865 45555679999998764
Q ss_pred cccCCHHHHHHHHHh--ccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYR--VLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~--~L~pgG~l~i~~~ 213 (290)
+ ......+++.+.+ +|+|||.+++...
T Consensus 133 ~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 133 R-RGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp S-TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred C-CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 3 5566778888866 5999999998754
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-15 Score=116.11 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=81.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCC-C-C--CCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDL-P-F--PTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l-~-~--~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++.... +++++.+|+.+. + . ..++||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5789999999999999999988 455999999999999999864321 688999998652 2 1 123699999987
Q ss_pred cccccCCHHHHHHHHH--hccCCCCEEEEEccCCC
Q 022929 184 SIEYWPDPQRGIREAY--RVLKLGGKACIIGPVYP 216 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~~ 216 (290)
.++ .+....++.+. ++|+|||.+++......
T Consensus 119 ~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 765 55566777777 99999999999876544
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-14 Score=123.32 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=80.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CC--CceEEEcCCCCCCC----CCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LK--ECKIVEGDAEDLPF----PTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~--~v~~~~~d~~~l~~----~~~~~D~i~ 180 (290)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++.. .. +++++++|+.++.. ..++||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 6789999999999999999987 5599999999999999998743 12 48899999866421 145799999
Q ss_pred ecCc----------ccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 181 SAGS----------IEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 181 ~~~~----------l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+.-- .++..+...+++.+.++|+|||.+++.....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 8432 1223345689999999999999987765443
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=119.89 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=98.2
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCCCCccEEEec--
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYADRYVSA-- 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~~~~D~i~~~-- 182 (290)
.++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++. ...+++++++|+.+++..+++||+|++.
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 3788999999999999999998864 489999999999999998874 2346899999998765445579999983
Q ss_pred ----CcccccCCH----------------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 183 ----GSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 183 ----~~l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
.++.+.++. ..+++++.++|||||.+++.++..... .+.+.+..+++
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~-------------Ene~~v~~~l~ 263 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE-------------ENEFVIQWALD 263 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG-------------GTHHHHHHHHH
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH-------------HhHHHHHHHHh
Confidence 223332221 478999999999999999987654221 03345667888
Q ss_pred HCCCcEEEEE
Q 022929 243 KAGFKDVQLK 252 (290)
Q Consensus 243 ~aGf~~v~~~ 252 (290)
+.||+++.+.
T Consensus 264 ~~~~~~~~~~ 273 (315)
T 1ixk_A 264 NFDVELLPLK 273 (315)
T ss_dssp HSSEEEECCC
T ss_pred cCCCEEecCC
Confidence 8898776543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=115.32 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=84.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCC-CCCC--CCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LPFP--TDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~-l~~~--~~~~D~i~~ 181 (290)
++.+|||||||+|..+..+++.+| +.+|+++|+|+.+++.|+++.. ..+++++.+|+.+ ++.. .++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 678999999999999999999987 7899999999999999998742 2479999999854 2322 347999998
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
... ..+...+++++.++|+|||.+++.+....
T Consensus 143 d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 143 DAD---KPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp CSC---GGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred CCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 653 44566799999999999999988766543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.2e-13 Score=108.79 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=89.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++.. +++++++|+.+++ ++||+|+++..+++..
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~ 124 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG--GVNFMVADVSEIS---GKYDTWIMNPPFGSVV 124 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT--TSEEEECCGGGCC---CCEEEEEECCCC----
T ss_pred CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC--CCEEEECcHHHCC---CCeeEEEECCCchhcc
Confidence 6789999999999999999887 44589999999999999999876 7899999998865 5699999999988886
Q ss_pred C--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 190 D--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 190 ~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+ ...+++++.+.+ |.+++..... +...+.+.++++| ++..+...
T Consensus 125 ~~~~~~~l~~~~~~~---g~~~~~~~~~-----------------~~~~~~~~~~~~g-~~~~~~~~ 170 (200)
T 1ne2_A 125 KHSDRAFIDKAFETS---MWIYSIGNAK-----------------ARDFLRREFSARG-DVFREEKV 170 (200)
T ss_dssp ---CHHHHHHHHHHE---EEEEEEEEGG-----------------GHHHHHHHHHHHE-EEEEEEEE
T ss_pred CchhHHHHHHHHHhc---CcEEEEEcCc-----------------hHHHHHHHHHHCC-CEEEEEEE
Confidence 4 246888898888 4444443110 2345677888888 65555443
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=6e-14 Score=124.68 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=86.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++..|..+++++|+|+.+++.++++.... .++++.+|+.+.+ +++||+|+++..+++
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFHD 273 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCCS
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCccc
Confidence 567999999999999999999977789999999999999999875322 3677888887643 567999999998875
Q ss_pred c-----CCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 188 W-----PDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 188 ~-----~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
. .+...+++++.++|+|||.+++.....
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 2 345689999999999999999986544
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.2e-14 Score=116.20 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=88.4
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---C--CCceEEEcCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---L--KECKIVEGDAE 167 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~--~~v~~~~~d~~ 167 (290)
...+...++..... +++.+|||||||+|..+..+++..+ +.+|+++|+|+++++.|+++.. . .+++++.+|+.
T Consensus 41 ~~~~l~~l~~~~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~ 119 (221)
T 3dr5_A 41 TGQLLTTLAATTNG-NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPL 119 (221)
T ss_dssp HHHHHHHHHHHSCC-TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHH
T ss_pred HHHHHHHHHHhhCC-CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHH
Confidence 34444444433322 1345999999999999999999865 7899999999999999988742 2 47999999885
Q ss_pred CC-C-CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 168 DL-P-FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 168 ~l-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+. + +.+++||+|++... ..+...+++++.++|+|||.+++.+..
T Consensus 120 ~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 120 DVMSRLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp HHGGGSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred HHHHHhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 43 2 33567999998653 345667999999999999999986544
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-13 Score=119.32 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=105.3
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAE 167 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~ 167 (290)
+..+.+...++... . .++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++... .++++.++|+.
T Consensus 201 ~l~~~la~~l~~~~-~-~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~ 278 (373)
T 3tm4_A 201 HLKASIANAMIELA-E-LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT 278 (373)
T ss_dssp CCCHHHHHHHHHHH-T-CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred CccHHHHHHHHHhh-c-CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 34566666666555 3 478999999999999999999985445999999999999999988432 36899999999
Q ss_pred CCCCCCCCccEEEecCccccc----CC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHH
Q 022929 168 DLPFPTDYADRYVSAGSIEYW----PD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIE 239 (290)
Q Consensus 168 ~l~~~~~~~D~i~~~~~l~~~----~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
+++.++++||+|+++-..... .. ...+++.+.++| +|.+++... +.+.+.+
T Consensus 279 ~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------------~~~~~~~ 337 (373)
T 3tm4_A 279 QLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------------EKKAIEE 337 (373)
T ss_dssp GGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------------CHHHHHH
T ss_pred hCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------------CHHHHHH
Confidence 988777789999996543321 11 256888899988 455444432 4577888
Q ss_pred HHHHCCCcEEEEEEc
Q 022929 240 WFQKAGFKDVQLKRI 254 (290)
Q Consensus 240 ll~~aGf~~v~~~~~ 254 (290)
.+++.||+..+...+
T Consensus 338 ~~~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 338 AIAENGFEIIHHRVI 352 (373)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHcCCEEEEEEEE
Confidence 999999998776554
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=114.04 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-~~~~~~D~i~~~~ 183 (290)
++.+|||||||+|..+..+++..++.+|+++|+++.+++.|+++.. ..+++++.+|+.+. + ..+++||+|++..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 6789999999999999999997778999999999999999998742 24799999999663 3 2356799999764
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
. ..+...+++.+.++|+|||.+++.+...
T Consensus 151 ~---~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 151 A---KAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp T---SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred c---HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 3 4566789999999999999998865544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-15 Score=127.53 Aligned_cols=139 Identities=13% Similarity=0.034 Sum_probs=102.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... .+++++++|+.+++ ++++||+|++...+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 6789999999999999999997 58999999999999999877431 36899999997765 45679999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
++..+....+.++.++|+|||.+++...... ............+.+++..++...|.-.++.....
T Consensus 155 ~~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~----~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~~~ 220 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPDGFEIFRLSKKI----TNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLN 220 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSCHHHHHHHHHHH----CSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEEET
T ss_pred CCcchhhhHHHHHHhhcCCcceeHHHHHHhh----CCceEEECCCCCCHHHHHHHhccCCCEEEEehhhc
Confidence 9887777677889999999998654321000 00000000112367788888888776555444433
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=118.43 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=86.0
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC--------------CCCceEEEcC
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------------LKECKIVEGD 165 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~--------------~~~v~~~~~d 165 (290)
++..+.. .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++.. ..+++++.+|
T Consensus 97 ~l~~l~~-~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d 175 (336)
T 2b25_A 97 ILSMMDI-NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175 (336)
T ss_dssp HHHHHTC-CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHhcCC-CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence 3443333 378999999999999999999974 45899999999999999998743 2579999999
Q ss_pred CCCC--CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh-HhhhhHH----------------
Q 022929 166 AEDL--PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSRYFAD---------------- 226 (290)
Q Consensus 166 ~~~l--~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-~~~~~~~---------------- 226 (290)
+.+. ++++++||+|++.. +++..+++++.++|+|||.+++..+...... ....+..
T Consensus 176 ~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 250 (336)
T 2b25_A 176 ISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVR 250 (336)
T ss_dssp TTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCCCC
T ss_pred hHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccceEEEeccc
Confidence 9876 45666799999843 3444589999999999999998766433211 1111111
Q ss_pred HhhcC---CCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 227 VWMLF---PKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 227 ~~~~~---~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.|... ....++.+.|+++||+.+++....+
T Consensus 251 ~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~~~ 283 (336)
T 2b25_A 251 DWLVCLAKQKNGILAQKVESKINTDVQLDSQEK 283 (336)
T ss_dssp CEEECC---------------------------
T ss_pred ceEEEeecccccchhhhhccccccccccccccc
Confidence 01111 1123788999999999998877653
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=111.30 Aligned_cols=132 Identities=17% Similarity=0.070 Sum_probs=96.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------CCCCceEEEcCCCC-CCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAED-LPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~v~~~~~d~~~-l~~~~~~~D~i~~ 181 (290)
++.+|||||||+|.++..+++..+..+++++|+++.+++.|+++. ..++++++.+|..+ ++..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998766789999999999999999875 23579999999854 2333567999999
Q ss_pred cCcccccCC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.......+. ...+++.+.++|+|||.+++...... . ... ....+.+.+++. |..+.....
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~-~-~~~----------~~~~~~~~l~~~-F~~v~~~~~ 218 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW-F-TPE----------LITNVQRDVKEI-FPITKLYTA 218 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT-T-CHH----------HHHHHHHHHHTT-CSEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcc-c-cHH----------HHHHHHHHHHHh-CCCeEEEEE
Confidence 654332221 25799999999999999988743210 0 000 134566677776 776665543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=113.15 Aligned_cols=103 Identities=11% Similarity=0.173 Sum_probs=86.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-CCC--CCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-PFP--TDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~~~--~~~~D~i~~~ 182 (290)
++.+|||||||+|..+..+++..|+.+|+++|+++.+++.|+++.. ..+++++.+|+.+. +.. +++||+|++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 6789999999999999999999888999999999999999998732 24689999998663 322 4679999987
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
... .+...+++.+.++|+|||.+++.+...
T Consensus 134 ~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 134 AAK---GQYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp GGG---SCHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred CCH---HHHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 664 367789999999999999999976544
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=113.17 Aligned_cols=112 Identities=27% Similarity=0.375 Sum_probs=88.1
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPF 171 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~ 171 (290)
..+...+++.+.. .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|+++. ...++++..+|. ..++
T Consensus 77 ~~~~~~~~~~l~~-~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~ 153 (235)
T 1jg1_A 77 PHMVAIMLEIANL-KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGF 153 (235)
T ss_dssp HHHHHHHHHHHTC-CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCC
T ss_pred HHHHHHHHHhcCC-CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCC
Confidence 3445555555544 3788999999999999999999865 89999999999999998873 234688999997 2244
Q ss_pred CC-CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 172 PT-DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 172 ~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
++ .+||+|++..++++++ +++.+.|+|||.+++.....
T Consensus 154 ~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 154 PPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 33 3499999999988776 37889999999999976543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=111.28 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC--------CCCceEEEcCCCCCCCCCCCccEE
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~--------~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
.++.+|||||||+|..+..+++.. +..+|+++|+++.+++.++++.. ..+++++..|+...+...++||+|
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 155 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 155 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence 478999999999999999999875 34699999999999999987643 247899999987655455679999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
++...++++. +++.++|||||.+++....
T Consensus 156 ~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 156 HVGAAAPVVP------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred EECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence 9988876553 6889999999999987543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=112.80 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=84.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-CCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-PFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~~~~~~~D~i~~~~ 183 (290)
++.+|||||||+|..+..+++..+ +.+|+++|+|+.+++.|+++.. .++++++.+|..+. +..++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 568999999999999999999877 7899999999999999987643 23588999998543 44446 99999873
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
. ..+...+++++.++|+|||.+++.+...
T Consensus 135 ~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D---VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp T---TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred C---hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 2 4567789999999999999998876544
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=115.29 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=96.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCC-CCC-CCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-LPF-PTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~-l~~-~~~~~D~i~~~~~ 184 (290)
++.+|||+| |+|.++..++...+..+|+++|+|+.+++.|+++.. ..+++++.+|+.+ ++. .+++||+|+++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 578999999 999999999988655799999999999999998742 2379999999987 663 3457999999876
Q ss_pred ccccCCHHHHHHHHHhccCCCCEE-EEEccCCCchhHhhhhHHHhhcCCCH---HHHHHHHH-HCCCcEEEEEE
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKA-CIIGPVYPTFWLSRYFADVWMLFPKE---EEYIEWFQ-KAGFKDVQLKR 253 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l-~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ll~-~aGf~~v~~~~ 253 (290)
++... ...+++++.++|+|||.+ ++....... +. ..+.+.+. +.||.+..+..
T Consensus 251 ~~~~~-~~~~l~~~~~~LkpgG~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~g~~~~~~~~ 308 (373)
T 2qm3_A 251 ETLEA-IRAFVGRGIATLKGPRCAGYFGITRRES---------------SLDKWREIQKLLLNEFNVVITDIIR 308 (373)
T ss_dssp SSHHH-HHHHHHHHHHTBCSTTCEEEEEECTTTC---------------CHHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred CchHH-HHHHHHHHHHHcccCCeEEEEEEecCcC---------------CHHHHHHHHHHHHHhcCcchhhhhh
Confidence 54332 578999999999999954 444322111 23 45667777 89998766543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=114.10 Aligned_cols=103 Identities=21% Similarity=0.156 Sum_probs=82.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-------CCceEEEcCCCCC-CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------KECKIVEGDAEDL-PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~v~~~~~d~~~l-~~~~~~~D~i~~ 181 (290)
++.+|||||||+|.++..+++..+..+++++|+|+.+++.|+++... .+++++.+|+.+. +..+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 56899999999999999999886778999999999999999988653 4689999998542 223467999998
Q ss_pred cCcccccC--CH--HHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWP--DP--QRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~--~~--~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...-...+ .. ..+++++.++|+|||.+++..
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 64322111 11 689999999999999999864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=112.19 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-----CCCeEEEEeCCHHHHHHHhhhCC--------CCCceEEEcCCCCCC----C
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAEDLP----F 171 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-----~~~~v~~vD~s~~~~~~a~~~~~--------~~~v~~~~~d~~~l~----~ 171 (290)
.++.+|||||||+|.++..+++.. +..+|+++|+++.+++.|+++.. ..+++++.+|+.+.. .
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 478999999999999999999885 34699999999999999987732 357899999997654 4
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..++||+|++...++++ ++++.++|+|||.+++...
T Consensus 159 ~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence 45679999999888765 4788999999999998754
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-13 Score=111.39 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=83.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-C---CCCCccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-F---PTDYADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-~---~~~~~D~i 179 (290)
++.+|||||||+|..+..+++.+| +.+++++|+++.+++.|+++.. .++++++.+|+.+. + + ..++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 678999999999999999999987 7899999999999999987642 23589999998542 1 1 11569999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
++... .+....+++.+.++|+|||.+++.+....
T Consensus 138 ~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 138 FIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EECSC---GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 98755 33456899999999999999988766543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=112.69 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCC------CeEEEEeCCHHHHHHHhhhCC--------CCCceEEEcCCCCCCCCC-
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDA------KNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAEDLPFPT- 173 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~------~~v~~vD~s~~~~~~a~~~~~--------~~~v~~~~~d~~~l~~~~- 173 (290)
.++.+|||||||+|.++..+++..+. .+|+++|+++.+++.++++.. ..+++++.+|... ++++
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 161 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPN 161 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGG
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcC
Confidence 47889999999999999999986532 599999999999999987743 2478999999876 4443
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++||+|++...++++. +++.+.|||||.+++...
T Consensus 162 ~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 6799999999988765 688999999999998754
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-13 Score=117.71 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=83.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC--CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL--PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l--~~~~~~~D~i~ 180 (290)
++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|+++.. ..+++++.+|+.+. ..++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 5689999999999999999998777899999999999999998763 35799999998553 23456799999
Q ss_pred ecCccccc--CC--HHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYW--PD--PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~--~~--~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+....... .+ ...+++.+.++|+|||.+++..
T Consensus 200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 86542111 11 3689999999999999999863
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=112.43 Aligned_cols=132 Identities=14% Similarity=0.022 Sum_probs=94.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCC-CCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~-l~~~~~~~D~i~~ 181 (290)
++.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++.. ..+++++.+|+.+ ++..+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 5689999999999999999988667899999999999999998762 3579999999754 2333567999998
Q ss_pred cCcccccC-----CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 182 AGSIEYWP-----DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 182 ~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
...-.+.. ...++++++.++|+|||.+++...... . ... ...++.+.+++. |..+.....
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~-~-~~~----------~~~~~~~~l~~~-F~~v~~~~~ 234 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF-Y-DIG----------WFKLAYRRISKV-FPITRVYLG 234 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT-T-THH----------HHHHHHHHHHHH-CSEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcc-c-CHH----------HHHHHHHHHHHH-CCceEEEEe
Confidence 53321121 125799999999999999998743211 0 000 124555666666 766665543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=106.29 Aligned_cols=98 Identities=21% Similarity=0.153 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCC---------CeEEEEeCCHHHHHHHhhhCCCCCceEE-EcCCCCCC--------
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDA---------KNVTILDQSPHQLAKAKQKEPLKECKIV-EGDAEDLP-------- 170 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~---------~~v~~vD~s~~~~~~a~~~~~~~~v~~~-~~d~~~l~-------- 170 (290)
.++.+|||+|||+|.++..+++..+. .+++++|+|+.. ...+++++ .+|+...+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------PLEGATFLCPADVTDPRTSQRILEV 92 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------CCTTCEEECSCCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------cCCCCeEEEeccCCCHHHHHHHHHh
Confidence 47899999999999999999998754 799999999831 12467888 88886543
Q ss_pred CCCCCccEEEecCccccc----CCH-------HHHHHHHHhccCCCCEEEEEccC
Q 022929 171 FPTDYADRYVSAGSIEYW----PDP-------QRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+++++||+|++...++.. .+. ..+++++.++|+|||.+++....
T Consensus 93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 334579999996654432 222 47899999999999999987653
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-13 Score=130.74 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=86.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCC--CCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l--~~~~~~~D~i~~~~~ 184 (290)
++.+|||||||.|.++..+++. +..|+|+|+|+.+++.|+..+.. .+++|.+++++++ ++.+++||+|+|..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 5689999999999999999998 89999999999999999876432 3589999999876 456678999999999
Q ss_pred ccccCCHHH--HHHHHHhccCCCCEEEEEccCC
Q 022929 185 IEYWPDPQR--GIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 185 l~~~~~~~~--~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
++|++++.. .+..+.+.|+++|..++.....
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 999998763 3456777788888777665443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.3e-13 Score=113.25 Aligned_cols=102 Identities=23% Similarity=0.273 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
.++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|+++.. ..++.++.+|+.+.+. .++||+|++....
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 37899999999999999999998766799999999999999998743 2468899999987643 5679999987654
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+...++..+.+.|+|||.+++.+...
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 55678999999999999999876543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.2e-13 Score=114.81 Aligned_cols=102 Identities=14% Similarity=0.071 Sum_probs=83.5
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCC--CCCCCCccEEEecCccc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL--PFPTDYADRYVSAGSIE 186 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l--~~~~~~~D~i~~~~~l~ 186 (290)
.+|||||||+|.++..+++.+|+.+++++|+++.+++.|++++.. .+++++.+|..+. .+++++||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 499999999999999999988889999999999999999998753 4799999998653 24456799999864333
Q ss_pred ccCC----HHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPD----PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~----~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.... ...+++.+.++|+|||.+++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 2211 25799999999999999988654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=100.65 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=93.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++.... +++++.+|+.+++ .+||+|+++..++.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 6789999999999999999887 3458999999999999999886533 6899999998864 36999999887766
Q ss_pred cC--CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 188 WP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 188 ~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.. ....+++.+.+++ |+ +++....... +.+.+.+.+++.||++..+...
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~-~~~~~~~~~~---------------~~~~~~~~l~~~g~~~~~~~~~ 175 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DV-VYSIHLAKPE---------------VRRFIEKFSWEHGFVVTHRLTT 175 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SE-EEEEEECCHH---------------HHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--Cc-EEEEEeCCcC---------------CHHHHHHHHHHCCCeEEEEEEE
Confidence 64 2357888888888 44 4443311110 2355677889999987766554
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=109.10 Aligned_cols=135 Identities=9% Similarity=-0.027 Sum_probs=100.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+..+|||||||+|-++..++...|..+|+++|+++.+++.+++++.. .+..+...|+..-+ +..+||++++.-++++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHH
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHH
Confidence 57899999999999999999988899999999999999999988543 34677888886644 4456999999999999
Q ss_pred cCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 188 WPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 188 ~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
+.+.+ ..+ ++.+.|+++|.++-... ..-..-...+...+ .+.|.+.+.+.|+.+.+.+
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~-ksl~Grs~gm~~~Y-----~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPT-KSLGQRSKGMFQNY-----SQSFESQARERSCRIQRLE 270 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEEC-C-------CHHHHH-----HHHHHHHHHHHTCCEEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccc-hhhcCCCcchhhHH-----HHHHHHHHHhcCCceeeee
Confidence 97653 355 89999999998865443 11001111122222 4678899999999554444
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.6e-13 Score=111.00 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=84.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-CC----CCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-FP----TDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-~~----~~~~D~ 178 (290)
++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++.. .++++++.+|+.+. + +. .++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 678999999999999999999877 7899999999999999987742 24589999998442 1 11 157999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
|++... ..+...+++.+.++|+|||.+++.+....
T Consensus 144 v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 144 IYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 996543 34567899999999999999998776543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=105.10 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=86.5
Q ss_pred CCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC--------C---CC
Q 022929 106 DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF--------P---TD 174 (290)
Q Consensus 106 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~--------~---~~ 174 (290)
...+++.+|||+|||+|.++..+++. +.+|+|+|+++.. ...+++++++|+.+.+. . .+
T Consensus 21 ~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~--------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 21 RVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME--------EIAGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp CCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC--------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred CCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc--------cCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 33447899999999999999999988 7899999998641 23579999999987542 1 03
Q ss_pred CccEEEecCcccccCC-----------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 175 YADRYVSAGSIEYWPD-----------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
+||+|++......... .+.+++.+.++|||||.+++....... ..++...++.
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~----------------~~~~~~~l~~ 154 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM----------------TNDFIAIWRK 154 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH----------------HHHHHHHHGG
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC----------------HHHHHHHHHH
Confidence 7999999654322211 136788899999999999886543321 2455566654
Q ss_pred CCCcEEEEEE
Q 022929 244 AGFKDVQLKR 253 (290)
Q Consensus 244 aGf~~v~~~~ 253 (290)
.|..+++.+
T Consensus 155 -~F~~v~~~k 163 (191)
T 3dou_A 155 -NFSSYKISK 163 (191)
T ss_dssp -GEEEEEEEC
T ss_pred -hcCEEEEEC
Confidence 587665544
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-12 Score=115.45 Aligned_cols=130 Identities=21% Similarity=0.229 Sum_probs=99.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCC--CCCCCccEEEe-
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLP--FPTDYADRYVS- 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~--~~~~~~D~i~~- 181 (290)
.++.+|||+|||+|..+..+++..++ .+++++|+++.+++.++++. ...+++++++|+.+++ +++++||+|++
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 37889999999999999999998766 89999999999999998773 3347899999998765 55467999996
Q ss_pred -----cCcccccCCH----------------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHH
Q 022929 182 -----AGSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240 (290)
Q Consensus 182 -----~~~l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (290)
..++.+.++. ..+++++.++|||||.+++.++..... .+.+.+..+
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~-------------ene~~v~~~ 404 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE-------------ENEKNIRWF 404 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG-------------GTHHHHHHH
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------------hHHHHHHHH
Confidence 2344444442 468999999999999999987754321 033456667
Q ss_pred HHHC-CCcEEEE
Q 022929 241 FQKA-GFKDVQL 251 (290)
Q Consensus 241 l~~a-Gf~~v~~ 251 (290)
+++. ||+.+.+
T Consensus 405 l~~~~~~~~~~~ 416 (450)
T 2yxl_A 405 LNVHPEFKLVPL 416 (450)
T ss_dssp HHHCSSCEECCC
T ss_pred HHhCCCCEEeec
Confidence 7775 7876543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.9e-13 Score=115.99 Aligned_cols=132 Identities=20% Similarity=0.144 Sum_probs=96.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------CCCceEEEcCCCC-CCCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAED-LPFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~~v~~~~~d~~~-l~~~~~~~D~i~ 180 (290)
++.+|||||||+|..+..+++..+..+++++|+++.+++.|+++.. ..+++++.+|+.+ ++..+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 5689999999999999999998667899999999999999998753 3579999999865 233456799999
Q ss_pred ecCcccc---cCC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 181 SAGSIEY---WPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 181 ~~~~l~~---~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+....+. .+. ...+++++.++|+|||.+++......... ......+.+.+++. |..+....
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~-----------~~~~~~~~~~l~~~-F~~v~~~~ 224 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTH-----------HRVHPVVHRTVREA-FRYVRSYK 224 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC--------------CHHHHHHHHHHTT-CSEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccC-----------HHHHHHHHHHHHHH-CCceEEEE
Confidence 9765543 111 25899999999999999988632211000 01234556667766 66555543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.3e-13 Score=112.29 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=84.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-C-----CCCCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-F-----PTDYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-~-----~~~~~D 177 (290)
++.+|||||||+|..+..+++..| +.+++++|+|+.+++.|+++.. ..+++++.+|..+. + + ..++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 568999999999999999999877 7899999999999999997642 24688999998542 2 1 146799
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+|++... ..+...+++.+.++|+|||.+++.+...
T Consensus 159 ~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 159 FIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp EEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 9998643 3467789999999999999998865443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-13 Score=116.11 Aligned_cols=103 Identities=22% Similarity=0.193 Sum_probs=80.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCC-CCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~-l~~~~~~~D~i~~ 181 (290)
++.+|||||||+|..+..+++..+..+++++|+++.+++.|+++.. ..+++++.+|+.+ ++..+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 5689999999999999999988777899999999999999998864 3468999999854 2234567999998
Q ss_pred cCcccccCCH----HHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDP----QRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~ 212 (290)
....+..+.. ..+++++.++|+|||.+++..
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 6532221221 578999999999999999875
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=113.32 Aligned_cols=104 Identities=21% Similarity=0.154 Sum_probs=83.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC-CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l-~~~~~~~D~i~~ 181 (290)
++.+|||||||+|..+..+++..+..+++++|+++.+++.|+++.. .++++++.+|+.+. +..+++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 5689999999999999999988667899999999999999998864 35789999998552 222567999998
Q ss_pred cCcccccCCH----HHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDP----QRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.......+.. ..+++.+.++|+|||.+++...
T Consensus 158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 5443322221 5899999999999999988743
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-13 Score=115.26 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=83.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-CCC-----CCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-PFP-----TDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~~~-----~~~~D~ 178 (290)
++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++.. ..+++++.+|+.+. +.. .++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 578999999999999999999875 7899999999999888877632 24799999998553 211 367999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
|++... ..+...+++++.++|+|||.+++.+...
T Consensus 140 V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 140 IFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp EEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred EEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 998654 3456678999999999999999976654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.3e-13 Score=114.96 Aligned_cols=103 Identities=21% Similarity=0.231 Sum_probs=81.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCC-CCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~-l~~~~~~~D~i~~ 181 (290)
++.+|||||||+|..+..+++..+..+++++|+++.+++.|+++.. ..+++++.+|..+ ++..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 5689999999999999999988667899999999999999998753 3578999999854 2334567999998
Q ss_pred cCcccccCC----HHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
....+..+. ...+++++.++|+|||.+++..
T Consensus 175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 654322211 2468999999999999998865
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-13 Score=113.13 Aligned_cols=99 Identities=18% Similarity=0.101 Sum_probs=75.3
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----CCceEE--EcCCCCCCCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIV--EGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~--~~d~~~l~~~~~~~D~i~~ 181 (290)
.++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... .++.++ ++|+.+++ +++||+|+|
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC 154 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence 47889999999999999999887 5899999998 54333322111 168899 88998866 567999999
Q ss_pred cCcccccCCHH-------HHHHHHHhccCCCC--EEEEEccC
Q 022929 182 AGSIEYWPDPQ-------RGIREAYRVLKLGG--KACIIGPV 214 (290)
Q Consensus 182 ~~~l~~~~~~~-------~~l~~~~~~L~pgG--~l~i~~~~ 214 (290)
..+ ++..++. .+++.+.++|+||| .+++....
T Consensus 155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 877 5444421 37889999999999 88886544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=112.02 Aligned_cols=100 Identities=13% Similarity=-0.006 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----CCceEE--EcCCCCCCCCCCCccEEE
Q 022929 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIV--EGDAEDLPFPTDYADRYV 180 (290)
Q Consensus 108 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~--~~d~~~l~~~~~~~D~i~ 180 (290)
..++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.... .++.++ ++|+.+++ +++||+|+
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~ 145 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM 145 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence 347899999999999999999887 5899999998 43333222111 168889 89998876 56799999
Q ss_pred ecCcccccCCHH-------HHHHHHHhccCCCC--EEEEEccC
Q 022929 181 SAGSIEYWPDPQ-------RGIREAYRVLKLGG--KACIIGPV 214 (290)
Q Consensus 181 ~~~~l~~~~~~~-------~~l~~~~~~L~pgG--~l~i~~~~ 214 (290)
|..+ ++..++. .+++.+.++|+||| .+++....
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9877 5444431 37889999999999 88886544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=111.19 Aligned_cols=106 Identities=11% Similarity=0.075 Sum_probs=83.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCC----CCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPF----PTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~----~~~~~D~i~~ 181 (290)
++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++. ...+++++.+|+.+++. ..++||+|++
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 162 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILL 162 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEE
Confidence 7889999999999999999997665 89999999999999998773 23478999999876543 2457999998
Q ss_pred c------Cccc------------ccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 182 A------GSIE------------YWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 182 ~------~~l~------------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
. .++. ......++++++.++|||||.+++.++..
T Consensus 163 d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 163 DAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 5 2221 11344689999999999999999987654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=109.59 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=83.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCC----CCCCC--CCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED----LPFPT--DYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~----l~~~~--~~~D~ 178 (290)
++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|+++.. ..+++++.+|+.+ ++..+ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 568999999999999999999876 6899999999999999987642 2468899998743 22222 57999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
|++... ..+...+++++.++|+|||.+++.+...
T Consensus 152 V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 998754 3456789999999999999999876554
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=111.75 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=80.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------------CCCCceEEEcCCCCC-CCCCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------------PLKECKIVEGDAEDL-PFPTDY 175 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------------~~~~v~~~~~d~~~l-~~~~~~ 175 (290)
++.+|||||||+|.++..+++. +..+++++|+++.+++.|+++. ...+++++.+|..+. +. +++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 5689999999999999999998 7789999999999999999886 235689999997542 22 457
Q ss_pred ccEEEecCcccccC--C--HHHHHHHHHhccCCCCEEEEEc
Q 022929 176 ADRYVSAGSIEYWP--D--PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 176 ~D~i~~~~~l~~~~--~--~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
||+|++....+..+ . ...+++.+.++|+|||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999865432211 1 2578999999999999998864
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=109.71 Aligned_cols=93 Identities=15% Similarity=-0.026 Sum_probs=79.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
.+.+|||||||+|..+..+++. + .+++++|+++.+++.|++++. .++++++.+|..+.. ++||+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 5689999999999999999988 6 899999999999999998753 247899999987754 679999986
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.+++..+++.+.+.|+|||.+++..
T Consensus 147 -----~~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 -----QEPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----SCCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CCChHHHHHHHHHhcCCCcEEEEEc
Confidence 3456679999999999999998863
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=111.02 Aligned_cols=115 Identities=13% Similarity=0.036 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCcc------chhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCCCceE-EEcCCCCCCCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT------GFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKI-VEGDAEDLPFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~------G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~v~~-~~~d~~~l~~~~~~~D~i~ 180 (290)
+++.+|||+|||+ |. ..+++..+ +.+|+|+|+|+. + .++++ +++|+.++++. ++||+|+
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------~~v~~~i~gD~~~~~~~-~~fD~Vv 128 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------SDADSTLIGDCATVHTA-NKWDLII 128 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------CSSSEEEESCGGGCCCS-SCEEEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------CCCEEEEECccccCCcc-CcccEEE
Confidence 3789999999944 66 44556655 589999999988 1 36889 99999887654 5699999
Q ss_pred ecCcccc--------c---CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 181 SAGSIEY--------W---PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 181 ~~~~l~~--------~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
++...+. . ...+.+++++.++|||||.+++...... ..+++.+++++.||..+
T Consensus 129 sn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~----------------~~~~l~~~l~~~GF~~v 192 (290)
T 2xyq_A 129 SDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----------------WNADLYKLMGHFSWWTA 192 (290)
T ss_dssp ECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS----------------CCHHHHHHHTTEEEEEE
T ss_pred EcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC----------------CHHHHHHHHHHcCCcEE
Confidence 9643221 1 1124789999999999999998654322 23578889999999876
Q ss_pred EEE
Q 022929 250 QLK 252 (290)
Q Consensus 250 ~~~ 252 (290)
++.
T Consensus 193 ~~~ 195 (290)
T 2xyq_A 193 FVT 195 (290)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-12 Score=107.00 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=83.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---C-CCceEEEcCCCCC-C-------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---L-KECKIVEGDAEDL-P------------- 170 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~-~~v~~~~~d~~~l-~------------- 170 (290)
++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++.. . ++++++.+|+.+. +
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 678999999999999999999976 6899999999999999998742 2 3488999987441 1
Q ss_pred -CCC--CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 171 -FPT--DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 171 -~~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+++ ++||+|++.... .+...+++++.++|+|||.+++.+...
T Consensus 140 ~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp TTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred cccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 222 679999987543 445688999999999999999876544
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=109.30 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=100.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC-----CeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA-----KNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~-----~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.+.. ..++.++++|.... ...++||+|+++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~N 208 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD 208 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEEC
Confidence 5689999999999999999887543 789999999999999987632 12578999998663 345679999998
Q ss_pred CcccccCCHH------------------HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHC
Q 022929 183 GSIEYWPDPQ------------------RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA 244 (290)
Q Consensus 183 ~~l~~~~~~~------------------~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 244 (290)
-.+.+++..+ .+++.+.+.|+|||.++++.+.. . . . -.....+.+.+.+.
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~--~-~----~-----~~~~~~ir~~l~~~ 276 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA--M-F----G-----TSDFAKVDKFIKKN 276 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG--G-G----G-----STTHHHHHHHHHHH
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch--h-c----C-----CchHHHHHHHHHhC
Confidence 7765554322 57999999999999998887532 1 0 0 01346788888888
Q ss_pred CCcEEEEEEcCcccc
Q 022929 245 GFKDVQLKRIGPKWY 259 (290)
Q Consensus 245 Gf~~v~~~~~~~~~~ 259 (290)
|+ +..+..++....
T Consensus 277 ~~-~~~ii~lp~~~F 290 (344)
T 2f8l_A 277 GH-IEGIIKLPETLF 290 (344)
T ss_dssp EE-EEEEEECCGGGS
T ss_pred Ce-EEEeeeCChhhc
Confidence 87 344555655433
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.1e-12 Score=109.35 Aligned_cols=86 Identities=22% Similarity=0.351 Sum_probs=69.5
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~ 170 (290)
..+...+++.+... ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++.+|+.+++
T Consensus 14 ~~i~~~i~~~~~~~-~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~ 90 (285)
T 1zq9_A 14 PLIINSIIDKAALR-PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 90 (285)
T ss_dssp HHHHHHHHHHTCCC-TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhcCCC-CCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc
Confidence 34555666655543 7889999999999999999998 57999999999999999987532 46899999998876
Q ss_pred CCCCCccEEEecCcc
Q 022929 171 FPTDYADRYVSAGSI 185 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l 185 (290)
++ +||+|+++...
T Consensus 91 ~~--~fD~vv~nlpy 103 (285)
T 1zq9_A 91 LP--FFDTCVANLPY 103 (285)
T ss_dssp CC--CCSEEEEECCG
T ss_pred ch--hhcEEEEecCc
Confidence 65 59999996443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=105.00 Aligned_cols=127 Identities=19% Similarity=0.163 Sum_probs=95.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
+++.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.+++|.. .++++++++|..+++. .+.||.|++...
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p 201 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC
Confidence 37899999999999999999987 35799999999999999998743 3458899999988764 456999997633
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+....++..+.++|++||.+.+-+....... .-...+.+.++.++.|+++..+
T Consensus 202 ----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~----------~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 202 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM----------PREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT----------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred ----CcHHHHHHHHHHHcCCCCEEEEEeeeccccc----------chhHHHHHHHHHHHcCCcEEEE
Confidence 2345678888999999999866433221100 0113467788899999976443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-12 Score=106.51 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=83.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-CC--C--CCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-FP--T--DYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-~~--~--~~~D~ 178 (290)
++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|+++.. ..+++++.+|+.+. + +. . ++||+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 678999999999999999999876 6899999999999999987732 24789999988542 1 11 1 56999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
|++... ..+...+++++.++|+|||.+++.+...
T Consensus 149 v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 149 AVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 998654 3456789999999999999999876543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-12 Score=115.91 Aligned_cols=137 Identities=14% Similarity=0.029 Sum_probs=96.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CC--CceEEEcCCCCC-C-C--CCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LK--ECKIVEGDAEDL-P-F--PTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~--~v~~~~~d~~~l-~-~--~~~~~D~i~ 180 (290)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++.. .. +++++++|+.+. + . ...+||+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 6789999999999999999986 23589999999999999998743 22 789999998652 2 1 234799999
Q ss_pred ecCcc-----cccCC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 181 SAGSI-----EYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 181 ~~~~l-----~~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+.-.. ....+ ..++++.+.++|+|||.+++........ .. . -.+.+.+.+.++|.++++.
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-~~-~---------~~~~i~~~~~~~g~~~~~~ 359 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VS-Q---------FKKQIEKGFGKQKHTYLDL 359 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HH-H---------HHHHHHHHHTTCCCEEEEE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-HH-H---------HHHHHHHHHHHcCCcEEEe
Confidence 84322 12222 3457888899999999999886543221 00 0 0244566777889986655
Q ss_pred EEcCccc
Q 022929 252 KRIGPKW 258 (290)
Q Consensus 252 ~~~~~~~ 258 (290)
...++.+
T Consensus 360 ~~~~~D~ 366 (385)
T 2b78_A 360 QQLPSDF 366 (385)
T ss_dssp ECCCTTS
T ss_pred CCCCCCC
Confidence 5555443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-12 Score=106.38 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=83.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-C-----CCCCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-F-----PTDYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-~-----~~~~~D 177 (290)
++.+|||||||+|..+..+++..| +.+++++|+++.+++.|+++.. .++++++.+|..+. + + ..++||
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 568999999999999999999876 6899999999999999987642 23588999998542 2 1 146799
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+|++... ..+...+++.+.++|+|||.+++.+...
T Consensus 150 ~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 150 FGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred EEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 9998643 3456789999999999999998865443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.6e-11 Score=108.24 Aligned_cols=137 Identities=19% Similarity=0.170 Sum_probs=97.0
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCC--
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-- 168 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~-- 168 (290)
++.+...+++.+... ++.+|||+|||+|.++..+++. ..+|+|+|+|+++++.|+++.. ..+++|+.+|+.+
T Consensus 271 ~e~l~~~~~~~l~~~-~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l 347 (433)
T 1uwv_A 271 NQKMVARALEWLDVQ-PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHTCC-TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred HHHHHHHHHHhhcCC-CCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHh
Confidence 445566666555432 6789999999999999999988 6899999999999999998742 2478999999976
Q ss_pred --CCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC
Q 022929 169 --LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 169 --l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 246 (290)
+++.+++||+|++.--.... ..+++.+.. ++|++.+++..... +...-...|.+.||
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc~p~-----------------tlard~~~l~~~Gy 406 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNPA-----------------TLARDSEALLKAGY 406 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCHH-----------------HHHHHHHHHHHTTC
T ss_pred hhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEECChH-----------------HHHhhHHHHHHCCc
Confidence 23445679999985332211 245555543 78888888764211 11222356677899
Q ss_pred cEEEEEEc
Q 022929 247 KDVQLKRI 254 (290)
Q Consensus 247 ~~v~~~~~ 254 (290)
++.++..+
T Consensus 407 ~~~~~~~~ 414 (433)
T 1uwv_A 407 TIARLAML 414 (433)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 98876654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-12 Score=123.07 Aligned_cols=124 Identities=17% Similarity=0.161 Sum_probs=92.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----CCceEEEcCCCC-CCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAED-LPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~~~d~~~-l~~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++... .+++++++|+.+ ++...++||+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 6889999999999999999885 345799999999999999987421 368899999866 333446799999853
Q ss_pred -----------cccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 184 -----------SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 184 -----------~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+.....+...+++.+.++|+|||.+++........ .+ .+.+++.||+...+
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~-------------~~----~~~l~~~g~~~~~i 679 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFR-------------MD----LDGLAKLGLKAQEI 679 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCC-------------CC----HHHHHHTTEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-------------cC----HHHHHHcCCceeee
Confidence 22333445678999999999999999876542110 01 35777889874444
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=110.73 Aligned_cols=132 Identities=15% Similarity=-0.027 Sum_probs=91.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC--ceEEEcCCCCC-CCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDL-PFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--v~~~~~d~~~l-~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||+|||+|.++..++.. +..|+++|+|+.+++.|+++...++ ..+.++|+.+. +...+.||+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 5899999999999999999987 5669999999999999998854322 35678888653 11123499999863321
Q ss_pred c---------cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 187 Y---------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 187 ~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
. ..+...+++.+.++|+|||.+++.++...... ..+ .+.+.+.+.++|.+...++..
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~-~~f----------~~~v~~a~~~~g~~~~i~~~~ 357 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRL-EDL----------LEVARRAAADLGRRLRVHRVT 357 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH-HHH----------HHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCH-HHH----------HHHHHHHHHHhCCeEEEEEEc
Confidence 1 12235788999999999999997765543210 000 134556677778765555444
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-11 Score=99.25 Aligned_cols=136 Identities=13% Similarity=-0.053 Sum_probs=93.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||||||.|.++..+. +..+|+++|+++.+++.++++... .+..+...|....+.++ ++|+|++.-++|+
T Consensus 105 ~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~ 180 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPL 180 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHH
T ss_pred CCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHH
Confidence 67899999999999999887 588999999999999999988532 45678889998767555 6999999999998
Q ss_pred cCCHH-HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 188 WPDPQ-RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 188 ~~~~~-~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
+.+.+ ...-++...|+++|.++-. +...-..-...+...+ ...|++.+.+ .+.+++..+++.
T Consensus 181 LE~q~~~~~~~ll~aL~~~~vvVsf-Ptksl~Gr~~gm~~~Y-----~~~~e~~~~~-~~~~~~~~~~~n 243 (253)
T 3frh_A 181 LEREQAGSAMALLQSLNTPRMAVSF-PTRSLGGRGKGMEANY-----AAWFEGGLPA-EFEIEDKKTIGT 243 (253)
T ss_dssp HHHHSTTHHHHHHHHCBCSEEEEEE-ECC-----------CH-----HHHHHHHSCT-TEEEEEEEEETT
T ss_pred hhhhchhhHHHHHHHhcCCCEEEEc-ChHHhcCCCcchhhHH-----HHHHHHHhhc-cchhhhheecCc
Confidence 86543 2333888899998776544 3221111111111111 3556666644 455666666654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=113.23 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=95.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC-CCCCCccEEEec--
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP-FPTDYADRYVSA-- 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~-~~~~~~D~i~~~-- 182 (290)
++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.++++.. .. +.++++|+.+++ ...++||+|++.
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D~P 179 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLDAP 179 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEECC
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEECCC
Confidence 7899999999999999999988754 799999999999999998743 23 788888886654 234679999962
Q ss_pred ----CcccccCCH----------------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 183 ----GSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 183 ----~~l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
.++...++. .++++++.++|||||.|+++++..... .+.+.+..+++
T Consensus 180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e-------------Ene~vv~~~l~ 246 (464)
T 3m6w_A 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE-------------ENEGVVAHFLK 246 (464)
T ss_dssp CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG-------------GTHHHHHHHHH
T ss_pred cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh-------------cCHHHHHHHHH
Confidence 222222221 568999999999999999987654321 03455666777
Q ss_pred HC-CCcEEEEE
Q 022929 243 KA-GFKDVQLK 252 (290)
Q Consensus 243 ~a-Gf~~v~~~ 252 (290)
+. +|+++.+.
T Consensus 247 ~~~~~~l~~~~ 257 (464)
T 3m6w_A 247 AHPEFRLEDAR 257 (464)
T ss_dssp HCTTEEEECCC
T ss_pred HCCCcEEEecc
Confidence 76 57766543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=110.21 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC--CCCCCccEEEec--
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--FPTDYADRYVSA-- 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~--~~~~~~D~i~~~-- 182 (290)
.++.+|||+|||+|..+..+++..++.+++++|+++.+++.++++... .+++++.+|+.+++ +++++||+|++.
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 324 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 324 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCC
Confidence 478899999999999999999997768999999999999999877432 24788999998765 455679999962
Q ss_pred ----CcccccCCH----------------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 183 ----GSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 183 ----~~l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.++.+.++. ..+++++.++|||||.+++.++..
T Consensus 325 csg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 325 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 334444442 378999999999999999987654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=6e-11 Score=109.54 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=83.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCC-CCCCccEEEec--
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF-PTDYADRYVSA-- 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~-~~~~~D~i~~~-- 182 (290)
++.+|||+|||+|..+..+++..+ ...|+++|+|+.+++.++++.. ..+++++++|+..++. ..++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 688999999999999999999864 4799999999999999988743 3478899999987653 34579999972
Q ss_pred ----CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCC
Q 022929 183 ----GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 183 ----~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.++...++ ..++++++.++|||||.|+++++..
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 22222222 1368999999999999999987654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-11 Score=108.29 Aligned_cols=105 Identities=17% Similarity=0.090 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeC----CHHHHHHHh-hhCCCCCceEEEc-CCCCCCCCCCCccEE
Q 022929 106 DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ----SPHQLAKAK-QKEPLKECKIVEG-DAEDLPFPTDYADRY 179 (290)
Q Consensus 106 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~----s~~~~~~a~-~~~~~~~v~~~~~-d~~~l~~~~~~~D~i 179 (290)
...+++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++.+. +....+++.++++ |+..++ ..+||+|
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V 152 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTL 152 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEE
Confidence 33347899999999999999999887 48999999 554332111 1111246888888 887765 4579999
Q ss_pred EecCccc---ccCCHH---HHHHHHHhccCCCCEEEEEccCC
Q 022929 180 VSAGSIE---YWPDPQ---RGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 180 ~~~~~l~---~~~~~~---~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+|....+ +..+.. .+++.+.++|||||.+++.....
T Consensus 153 ~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 153 LCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp EECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred EECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 9976653 222222 47888999999999988865433
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-11 Score=109.47 Aligned_cols=132 Identities=17% Similarity=0.021 Sum_probs=95.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---C-C-CceEEEcCCCCCCC----CCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-K-ECKIVEGDAEDLPF----PTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~-~-~v~~~~~d~~~l~~----~~~~~D~i~ 180 (290)
++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|+++.. . . +++++.+|+.+... ...+||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 67899999999999999999872 4699999999999999998743 2 2 68899999865421 135699999
Q ss_pred ecCc---------ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 181 SAGS---------IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 181 ~~~~---------l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+.-- .........++.++.+.|+|||.+++.+...... .. . ..+.+.+.+.++|++...+
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~-~---------~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT-SD-L---------FQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC-HH-H---------HHHHHHHHHHHHTCCEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-HH-H---------HHHHHHHHHHHcCCeEEEE
Confidence 8532 2222445689999999999999999876543221 00 0 0234556777888655444
Q ss_pred EE
Q 022929 252 KR 253 (290)
Q Consensus 252 ~~ 253 (290)
+.
T Consensus 368 ~~ 369 (396)
T 3c0k_A 368 EQ 369 (396)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=109.44 Aligned_cols=132 Identities=19% Similarity=0.058 Sum_probs=94.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCC----CCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF----PTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~----~~~~~D~i~~~ 182 (290)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|+++.. ..+++++++|+.+... .+.+||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5689999999999999999998 6799999999999999998743 2348999999865421 14579999984
Q ss_pred Ccccc---------cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 183 GSIEY---------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 183 ~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
--... ..+...++..+.++|+|||.+++.+....... . . -.+.+.+.+.++|.....+..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~-~---------~~~~i~~~~~~~g~~~~~i~~ 355 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTE-P-L---------FYAMVAEAAQDAHRLLRVVEK 355 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH-H-H---------HHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCH-H-H---------HHHHHHHHHHHcCCeEEEEEc
Confidence 32211 12345789999999999999999876432210 0 0 023455677788865544444
Q ss_pred c
Q 022929 254 I 254 (290)
Q Consensus 254 ~ 254 (290)
.
T Consensus 356 ~ 356 (382)
T 1wxx_A 356 R 356 (382)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-11 Score=105.45 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=89.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++.. ++ +..+|+++|+|+.+++.++++.. ..+++++++|+.+.. ++||+|++....
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK 268 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence 788999999999999999 77 37899999999999999998743 246899999998765 669999985321
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHC-CCcEEEEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA-GFKDVQLKR 253 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a-Gf~~v~~~~ 253 (290)
....+++.+.++|+|||.+++.+.... .+.+.+.++++ |+++..+..
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------~~~~~~~l~~~~~~~i~~~~~ 316 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTIGKD-----------------FDKAIKLFEKKCDCEVLEKRI 316 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEEESS-----------------SHHHHHHHHHHSEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEeecC-----------------chHHHHHHHHhcCCcEEEEEE
Confidence 123688999999999999988765543 12344455555 777655444
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=112.87 Aligned_cols=131 Identities=12% Similarity=0.101 Sum_probs=97.3
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC-CCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP-FPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~-~~~~~~D~i~~~~ 183 (290)
.++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.++++.. ..++.+++.|..+++ ..+++||+|++.-
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence 37899999999999999999987543 799999999999999988743 346888888886653 2345799999732
Q ss_pred ------cccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHH
Q 022929 184 ------SIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWF 241 (290)
Q Consensus 184 ------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 241 (290)
++..-++ ..++++++.++|||||.|+.+++..... -+.+.+..++
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e-------------Ene~vv~~~l 250 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE-------------ENEEIISWLV 250 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG-------------GTHHHHHHHH
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc-------------cCHHHHHHHH
Confidence 1211111 1268999999999999999987655321 1456677888
Q ss_pred HHCCCcEEEEE
Q 022929 242 QKAGFKDVQLK 252 (290)
Q Consensus 242 ~~aGf~~v~~~ 252 (290)
++.||+++.+.
T Consensus 251 ~~~~~~l~~~~ 261 (456)
T 3m4x_A 251 ENYPVTIEEIP 261 (456)
T ss_dssp HHSSEEEECCC
T ss_pred HhCCCEEEecc
Confidence 88887766654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.3e-12 Score=112.98 Aligned_cols=105 Identities=20% Similarity=0.066 Sum_probs=82.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---C-CceEEEcCCCCCCC----CCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---K-ECKIVEGDAEDLPF----PTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~-~v~~~~~d~~~l~~----~~~~~D~i~~ 181 (290)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++... . +++++.+|+.+... ...+||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999987 346999999999999999987532 2 68899999865421 2457999998
Q ss_pred cCcccc---------cCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 182 AGSIEY---------WPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 182 ~~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.-.... ..+...++.++.++|+|||.+++.++..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 532211 1334578899999999999998887654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-11 Score=102.61 Aligned_cols=84 Identities=17% Similarity=0.272 Sum_probs=66.7
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPT 173 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~ 173 (290)
..+...+++.+... ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.++++++
T Consensus 16 ~~~~~~i~~~~~~~-~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 16 KHNIDKIMTNIRLN-EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHHHHHTTCCCC-TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHHhCCCC-CCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc
Confidence 44556666666543 7889999999999999999998 58999999999999999988643 57999999998887764
Q ss_pred -CCccEEEec
Q 022929 174 -DYADRYVSA 182 (290)
Q Consensus 174 -~~~D~i~~~ 182 (290)
..| .|+++
T Consensus 93 ~~~~-~vv~n 101 (244)
T 1qam_A 93 NQSY-KIFGN 101 (244)
T ss_dssp SCCC-EEEEE
T ss_pred CCCe-EEEEe
Confidence 334 44544
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=105.52 Aligned_cols=130 Identities=15% Similarity=0.031 Sum_probs=92.0
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~ 175 (290)
+.+.+++.+.. .++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.| .+++++++|+.+... .++
T Consensus 27 l~~~~~~~~~~-~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~~~~~~~~D~~~~~~-~~~ 98 (421)
T 2ih2_A 27 VVDFMVSLAEA-PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------PWAEGILADFLLWEP-GEA 98 (421)
T ss_dssp HHHHHHHHCCC-CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------TTEEEEESCGGGCCC-SSC
T ss_pred HHHHHHHhhcc-CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------CCCcEEeCChhhcCc-cCC
Confidence 34444444432 256799999999999999999875 468999999999998766 468899999977543 457
Q ss_pred ccEEEecCcccc----------cCC-------------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHH
Q 022929 176 ADRYVSAGSIEY----------WPD-------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226 (290)
Q Consensus 176 ~D~i~~~~~l~~----------~~~-------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 226 (290)
||+|+++--... +++ ...+++.+.++|+|||.++++.+..-. .
T Consensus 99 fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l-------~- 170 (421)
T 2ih2_A 99 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWL-------V- 170 (421)
T ss_dssp EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGG-------T-
T ss_pred CCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHh-------c-
Confidence 999999522211 111 125688999999999999988654210 0
Q ss_pred HhhcCCCHHHHHHHHHHCCC
Q 022929 227 VWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 227 ~~~~~~~~~~~~~ll~~aGf 246 (290)
-...+.+++.+.+.|+
T Consensus 171 ----~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 171 ----LEDFALLREFLAREGK 186 (421)
T ss_dssp ----CGGGHHHHHHHHHHSE
T ss_pred ----CccHHHHHHHHHhcCC
Confidence 0023678888888887
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.9e-10 Score=100.66 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=75.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC--ceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++...++ ++|+.+|+.++.. . +||+|++.-....
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPRAG 365 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCTTC
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCccc
Confidence 6789999999999999999987 6799999999999999998753222 8899999988643 2 6999998543211
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
....+++.+. .|+|+|.+++..
T Consensus 366 --~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 --LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp --SCHHHHHHHH-HHCCSEEEEEES
T ss_pred --hHHHHHHHHH-hcCCCcEEEEEC
Confidence 1234666654 489999998875
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=100.35 Aligned_cols=86 Identities=23% Similarity=0.356 Sum_probs=64.6
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFP 172 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~ 172 (290)
.+...+++.+... ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ...+++++.+|+.+++++
T Consensus 29 ~i~~~i~~~~~~~-~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIK-SSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHHHHHHHCCC-TTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC
T ss_pred HHHHHHHHhcCCC-CcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc
Confidence 3445555555443 7889999999999999999987 679999999999999998764 235789999999887654
Q ss_pred CCCccEEEecCccc
Q 022929 173 TDYADRYVSAGSIE 186 (290)
Q Consensus 173 ~~~~D~i~~~~~l~ 186 (290)
+||+|+++...+
T Consensus 106 --~~D~Vv~n~py~ 117 (299)
T 2h1r_A 106 --KFDVCTANIPYK 117 (299)
T ss_dssp --CCSEEEEECCGG
T ss_pred --cCCEEEEcCCcc
Confidence 699999865443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.09 E-value=6.2e-13 Score=112.55 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=78.8
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCC-CCc
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT-DYA 176 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~-~~~ 176 (290)
..+++.+.. .++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++.. ..+++++++|+.+++++. ++|
T Consensus 19 ~~i~~~~~~-~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLNL-KETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCCC-CSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcCC-CCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 344444443 26789999999999999999998 5899999999999999987754 346899999999887763 568
Q ss_pred cEEEecCcc-----------cccCCHHHHH----HHHHhccCCCCEEEEE
Q 022929 177 DRYVSAGSI-----------EYWPDPQRGI----REAYRVLKLGGKACII 211 (290)
Q Consensus 177 D~i~~~~~l-----------~~~~~~~~~l----~~~~~~L~pgG~l~i~ 211 (290)
.|+++--. .|.......+ +.+.++|+|||.+.+.
T Consensus 96 -~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 96 -KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp -EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred -EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 56654221 1122222334 6688888888877654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=99.62 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=72.8
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~ 173 (290)
..+...+++.+... ++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.. ..+++++++|+.++++++
T Consensus 36 ~~i~~~Iv~~l~~~-~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~ 112 (295)
T 3gru_A 36 KNFVNKAVESANLT-KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNK 112 (295)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGG
T ss_pred HHHHHHHHHhcCCC-CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCccc
Confidence 34555666665553 7889999999999999999998 6899999999999999988752 357999999999888777
Q ss_pred CCccEEEecCcc
Q 022929 174 DYADRYVSAGSI 185 (290)
Q Consensus 174 ~~~D~i~~~~~l 185 (290)
.+||+|+++...
T Consensus 113 ~~fD~Iv~NlPy 124 (295)
T 3gru_A 113 LDFNKVVANLPY 124 (295)
T ss_dssp SCCSEEEEECCG
T ss_pred CCccEEEEeCcc
Confidence 779999977444
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-09 Score=95.90 Aligned_cols=148 Identities=15% Similarity=0.138 Sum_probs=101.9
Q ss_pred CCEEEEEcCccchhHHHHHhh-----------------CCCCeEEEEeCC-----------HHHHHHHhhhCC-CCCceE
Q 022929 111 NMLVVDVGGGTGFTTLGIVKH-----------------VDAKNVTILDQS-----------PHQLAKAKQKEP-LKECKI 161 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~-----------------~~~~~v~~vD~s-----------~~~~~~a~~~~~-~~~v~~ 161 (290)
..+|+|+||++|..+..+... .|..+|+..|+- +...+.+++... ..+.-|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999988877654 356889999997 444444433322 123355
Q ss_pred EEcCCC---CCCCCCCCccEEEecCcccccCCHH---------------------------------------HHHHHHH
Q 022929 162 VEGDAE---DLPFPTDYADRYVSAGSIEYWPDPQ---------------------------------------RGIREAY 199 (290)
Q Consensus 162 ~~~d~~---~l~~~~~~~D~i~~~~~l~~~~~~~---------------------------------------~~l~~~~ 199 (290)
+.+... .-.++++++|+|+++.++||+++.. .+|+...
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 3458899999999999999986532 1266668
Q ss_pred hccCCCCEEEEEccCCCch--------hHhhhhHHH----------------hhcCCCHHHHHHHHHHCC-CcEEEEEEc
Q 022929 200 RVLKLGGKACIIGPVYPTF--------WLSRYFADV----------------WMLFPKEEEYIEWFQKAG-FKDVQLKRI 254 (290)
Q Consensus 200 ~~L~pgG~l~i~~~~~~~~--------~~~~~~~~~----------------~~~~~~~~~~~~ll~~aG-f~~v~~~~~ 254 (290)
+.|+|||.+++.....+.. .....+..+ -..+++.+++..+++++| |++.+++.+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~ 292 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETF 292 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 9999999999987665443 222222211 123478999999999985 898888776
Q ss_pred Cccc
Q 022929 255 GPKW 258 (290)
Q Consensus 255 ~~~~ 258 (290)
...|
T Consensus 293 ~~~~ 296 (384)
T 2efj_A 293 NAPY 296 (384)
T ss_dssp EEET
T ss_pred eecc
Confidence 5444
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.6e-10 Score=99.09 Aligned_cols=121 Identities=13% Similarity=-0.025 Sum_probs=88.4
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC-------------------------------------
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA------------------------------------- 134 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~------------------------------------- 134 (290)
+..+.++..++...... ++..|||++||+|.+++.++....+
T Consensus 184 pl~e~lAa~ll~l~~~~-~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 262 (393)
T 3k0b_A 184 PIKETMAAALVLLTSWH-PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ 262 (393)
T ss_dssp SCCHHHHHHHHHHSCCC-TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CCcHHHHHHHHHHhCCC-CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence 45667777777666553 6789999999999999988865322
Q ss_pred -CeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCccc-cc---CCHHHHHHHHHhccCC-
Q 022929 135 -KNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIE-YW---PDPQRGIREAYRVLKL- 204 (290)
Q Consensus 135 -~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~-~~---~~~~~~l~~~~~~L~p- 204 (290)
.+++|+|+|+.+++.|+++.. ..++++.++|+.+++.+. +||+|+++--.. .+ .+...+.+.+.+.|++
T Consensus 263 ~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~ 341 (393)
T 3k0b_A 263 PLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTED-EYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM 341 (393)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCC-CSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCC-CCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence 469999999999999998743 235899999998877654 699999973322 11 1223456666666665
Q ss_pred -CCEEEEEccC
Q 022929 205 -GGKACIIGPV 214 (290)
Q Consensus 205 -gG~l~i~~~~ 214 (290)
||.+++.+..
T Consensus 342 ~g~~~~iit~~ 352 (393)
T 3k0b_A 342 PTWSVYVLTSY 352 (393)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEECC
Confidence 8998887653
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=97.05 Aligned_cols=122 Identities=11% Similarity=-0.007 Sum_probs=90.6
Q ss_pred CcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC------------------------------------
Q 022929 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA------------------------------------ 134 (290)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~------------------------------------ 134 (290)
.+..+.++..++...... ++..|||.+||+|.+++.++....+
T Consensus 176 Apl~e~LAaall~l~~~~-~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 254 (384)
T 3ldg_A 176 APIKENMAAAIILLSNWF-PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYD 254 (384)
T ss_dssp CCCCHHHHHHHHHHTTCC-TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred CCCcHHHHHHHHHHhCCC-CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhcc
Confidence 345677777777766653 7789999999999999988865322
Q ss_pred --CeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCccc-ccC---CHHHHHHHHHhccCC
Q 022929 135 --KNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIE-YWP---DPQRGIREAYRVLKL 204 (290)
Q Consensus 135 --~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~-~~~---~~~~~l~~~~~~L~p 204 (290)
.+++|+|+++.+++.|++|.. ...+++.++|+.+++.++ +||+|+++--.. .+. +...+.+.+.+.||+
T Consensus 255 ~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 255 IQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAP 333 (384)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence 469999999999999998743 235899999998877654 699999973322 122 234566777777776
Q ss_pred --CCEEEEEccC
Q 022929 205 --GGKACIIGPV 214 (290)
Q Consensus 205 --gG~l~i~~~~ 214 (290)
||.+++.+..
T Consensus 334 ~~g~~~~iit~~ 345 (384)
T 3ldg_A 334 LKTWSQFILTND 345 (384)
T ss_dssp CTTSEEEEEESC
T ss_pred CCCcEEEEEECC
Confidence 9999888653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.8e-10 Score=96.55 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=70.4
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~ 174 (290)
..+.+.+++.+... ++ +|||||||+|.++..+++. +.+|+++|+++++++.++++....+++++++|+.++++++.
T Consensus 33 ~~i~~~Iv~~~~~~-~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~ 108 (271)
T 3fut_A 33 EAHLRRIVEAARPF-TG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEV 108 (271)
T ss_dssp HHHHHHHHHHHCCC-CS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGS
T ss_pred HHHHHHHHHhcCCC-CC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhc
Confidence 44566666666554 67 9999999999999999998 57999999999999999998776789999999988776532
Q ss_pred -CccEEEecCc
Q 022929 175 -YADRYVSAGS 184 (290)
Q Consensus 175 -~~D~i~~~~~ 184 (290)
.+|.|+++.-
T Consensus 109 ~~~~~iv~NlP 119 (271)
T 3fut_A 109 PQGSLLVANLP 119 (271)
T ss_dssp CTTEEEEEEEC
T ss_pred cCccEEEecCc
Confidence 5888887643
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.9e-10 Score=93.81 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=66.6
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~ 173 (290)
..+...+++.+... ++.+|||||||+|.++..+++. +.+|+++|+++++++.++++.. ..+++++++|+.++++++
T Consensus 15 ~~i~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQ-KTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSS 91 (255)
T ss_dssp HHHHHHHHHHHCCC-TTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGG
T ss_pred HHHHHHHHHhcCCC-CcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHH
Confidence 34555566665543 7889999999999999999998 5799999999999999998754 357999999998887542
Q ss_pred ----CCccEEEec
Q 022929 174 ----DYADRYVSA 182 (290)
Q Consensus 174 ----~~~D~i~~~ 182 (290)
++|| |+++
T Consensus 92 ~~~~~~~~-vv~N 103 (255)
T 3tqs_A 92 VKTDKPLR-VVGN 103 (255)
T ss_dssp SCCSSCEE-EEEE
T ss_pred hccCCCeE-EEec
Confidence 4577 5543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-09 Score=93.74 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=97.0
Q ss_pred CCCEEEEEcCccchhHHHHH--------hhC-------CCCeEEEEeCCHHHHHHHhhhCC---------------CCCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIV--------KHV-------DAKNVTILDQSPHQLAKAKQKEP---------------LKEC 159 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~--------~~~-------~~~~v~~vD~s~~~~~~a~~~~~---------------~~~v 159 (290)
...+|+|+|||+|..+..+. +.+ |..+|...|+-.......=+.+. ..+.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 35799999999999888762 222 56889999985533221111111 0011
Q ss_pred eE---EEcCCCCCCCCCCCccEEEecCcccccCCH--------------------------------------HHHHHHH
Q 022929 160 KI---VEGDAEDLPFPTDYADRYVSAGSIEYWPDP--------------------------------------QRGIREA 198 (290)
Q Consensus 160 ~~---~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~--------------------------------------~~~l~~~ 198 (290)
-| +.+....-.++++++|+|+|+.++||+++. ..+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 334444445888999999999999999732 2468888
Q ss_pred HhccCCCCEEEEEccCCCch--------------hHhhhhHHH----------------hhcCCCHHHHHHHHH-HCCCc
Q 022929 199 YRVLKLGGKACIIGPVYPTF--------------WLSRYFADV----------------WMLFPKEEEYIEWFQ-KAGFK 247 (290)
Q Consensus 199 ~~~L~pgG~l~i~~~~~~~~--------------~~~~~~~~~----------------~~~~~~~~~~~~ll~-~aGf~ 247 (290)
.+.|+|||.+++.....+.. .....+.+. -..+++.+++.++++ +.||+
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcE
Confidence 99999999999986554321 011111110 112478999999998 59999
Q ss_pred EEEEEEcCccc
Q 022929 248 DVQLKRIGPKW 258 (290)
Q Consensus 248 ~v~~~~~~~~~ 258 (290)
+..++.+...|
T Consensus 292 I~~le~~~~~~ 302 (374)
T 3b5i_A 292 IDKLVVYKGGS 302 (374)
T ss_dssp EEEEEEEECCC
T ss_pred EEEEEEEeecC
Confidence 98888765443
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-09 Score=96.51 Aligned_cols=121 Identities=11% Similarity=0.029 Sum_probs=89.0
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC-------------------------------------
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA------------------------------------- 134 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~------------------------------------- 134 (290)
+..+.++..++...... ++.+|||++||+|.+++.++....+
T Consensus 178 pl~e~lAa~ll~~~~~~-~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 256 (385)
T 3ldu_A 178 PIRETLAAGLIYLTPWK-AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES 256 (385)
T ss_dssp CCCHHHHHHHHHTSCCC-TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred CCcHHHHHHHHHhhCCC-CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence 44566777766666553 7789999999999999998765211
Q ss_pred -CeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCccc-cc---CCHHHHHHHHHhccCC-
Q 022929 135 -KNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIE-YW---PDPQRGIREAYRVLKL- 204 (290)
Q Consensus 135 -~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~-~~---~~~~~~l~~~~~~L~p- 204 (290)
.+|+|+|+++.+++.|+++... .++++.+.|+.+++.+ ++||+|+++--.. .+ .+...+.+++.+.|++
T Consensus 257 ~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 257 KFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence 5799999999999999987432 3589999999887654 4799999965432 11 2234566777777766
Q ss_pred -CCEEEEEccC
Q 022929 205 -GGKACIIGPV 214 (290)
Q Consensus 205 -gG~l~i~~~~ 214 (290)
|+.+++.+..
T Consensus 336 ~g~~~~iit~~ 346 (385)
T 3ldu_A 336 KNWSYYLITSY 346 (385)
T ss_dssp BSCEEEEEESC
T ss_pred CCCEEEEEECC
Confidence 8888887653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=100.03 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=85.4
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-------------CCCeEEEEeCCHHHHHHHhhhCC---CC--
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-------------DAKNVTILDQSPHQLAKAKQKEP---LK-- 157 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------~~~~v~~vD~s~~~~~~a~~~~~---~~-- 157 (290)
.+...+++.+.. .++.+|+|+|||+|.++..+++.. +..+++|+|+++.+++.|+.+.. ..
T Consensus 158 ~v~~~mv~~l~~-~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~ 236 (445)
T 2okc_A 158 PLIQAMVDCINP-QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD 236 (445)
T ss_dssp HHHHHHHHHHCC-CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHhCC-CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcC
Confidence 344444444433 367899999999999999888753 24689999999999999987632 11
Q ss_pred CceEEEcCCCCCCCCCCCccEEEecCcccccCC-----------------HHHHHHHHHhccCCCCEEEEEcc
Q 022929 158 ECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD-----------------PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 158 ~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~-----------------~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++.+.++|....+... +||+|+++-.+..... ...+++.+.++|+|||++.++.+
T Consensus 237 ~~~i~~gD~l~~~~~~-~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 237 RSPIVCEDSLEKEPST-LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CCSEEECCTTTSCCSS-CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEeeCCCCCCcccC-CcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 5678999987765443 6999999754443211 13689999999999999988765
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=97.21 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=79.0
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC-
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP- 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~- 170 (290)
+.+...+++.... .+.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++.. ..+++++.+|+.++.
T Consensus 200 ~~l~~~~~~~~~~--~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~ 275 (369)
T 3bt7_A 200 IQMLEWALDVTKG--SKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 275 (369)
T ss_dssp HHHHHHHHHHTTT--CCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH
T ss_pred HHHHHHHHHHhhc--CCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence 4445555555443 3578999999999999999886 5799999999999999998743 247899999986531
Q ss_pred -CCC--------------CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 171 -FPT--------------DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 171 -~~~--------------~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+.. .+||+|++.---. .+..++.+.|+++|.+++.++.
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~------g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRS------GLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTT------CCCHHHHHHHTTSSEEEEEESC
T ss_pred HHhhccccccccccccccCCCCEEEECcCcc------ccHHHHHHHHhCCCEEEEEECC
Confidence 111 2699998642211 2345566777789988887664
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-09 Score=88.73 Aligned_cols=76 Identities=24% Similarity=0.390 Sum_probs=63.4
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~ 173 (290)
..+...+++.+... ++.+|||||||+|.++..+++. +..+++++|+++.+++.++++ ...+++++++|+.++++++
T Consensus 17 ~~i~~~iv~~~~~~-~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 17 EGVLKKIAEELNIE-EGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-GDERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-CCTTEEEECSCTTTCCGGG
T ss_pred HHHHHHHHHhcCCC-CcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-cCCCeEEEEcchhhCChhH
Confidence 44556666666553 7889999999999999999987 358999999999999999988 5568999999999887654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.8e-10 Score=95.40 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=68.1
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC--CC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--FP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~--~~ 172 (290)
+...+++.+.. .++.+|||+|||+|.++..+++..++.+|+|+|+|+.+++.|+++... .+++++++|+.+++ +.
T Consensus 14 Ll~e~l~~L~~-~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 14 MVREVIEFLKP-EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 92 (301)
T ss_dssp THHHHHHHHCC-CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHHhcCC-CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 33444444443 378899999999999999999998778999999999999999988643 57999999987764 11
Q ss_pred ---CCCccEEEecC
Q 022929 173 ---TDYADRYVSAG 183 (290)
Q Consensus 173 ---~~~~D~i~~~~ 183 (290)
..+||.|++..
T Consensus 93 ~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 93 TLGIEKVDGILMDL 106 (301)
T ss_dssp HTTCSCEEEEEEEC
T ss_pred hcCCCCCCEEEEcC
Confidence 14699999754
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-08 Score=86.45 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCC---CCccEEEe
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPT---DYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~---~~~D~i~~ 181 (290)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++. ...+++++.+|+.+++... .+||.|++
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence 378999999999999999999875 3589999999999999998874 3357899999987764321 46999997
Q ss_pred c------CcccccC-----------CH-------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 182 A------GSIEYWP-----------DP-------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 182 ~------~~l~~~~-----------~~-------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
. .++...+ +. .++++.+.++++ ||.|+..++..
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 2 1221111 11 246777888886 99988877654
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=97.10 Aligned_cols=99 Identities=21% Similarity=0.146 Sum_probs=78.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------------------CCceEEEcCCCCCC-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------------KECKIVEGDAEDLP- 170 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------------~~v~~~~~d~~~l~- 170 (290)
++.+|||+|||+|..++.++...++.+|+++|+++++++.+++|... .+++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 57899999999999999999987778899999999999999987432 23788999985532
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...++||+|++.- . .....+++.+.+.|++||.+++..
T Consensus 127 ~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1134699999542 1 234678999999999999888864
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.85 E-value=5.6e-09 Score=92.42 Aligned_cols=149 Identities=14% Similarity=0.106 Sum_probs=101.1
Q ss_pred CCCEEEEEcCccchhHHHHHhh----------------CCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEE---cCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH----------------VDAKNVTILDQSPHQLAKAKQKEPL----KECKIVE---GDA 166 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~----------------~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~---~d~ 166 (290)
..-+|+|+||++|..+..+... .|..+|+..|+.......+-+.+.. .+.-|+. +.+
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4578999999999876654433 3568899999977666666555432 1233444 344
Q ss_pred CCCCCCCCCccEEEecCcccccCCHH---------------------------------HHHHHHHhccCCCCEEEEEcc
Q 022929 167 EDLPFPTDYADRYVSAGSIEYWPDPQ---------------------------------RGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 167 ~~l~~~~~~~D~i~~~~~l~~~~~~~---------------------------------~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....++++++|+|+|+.++||+++.. .+|+...+.|+|||.+++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 44568899999999999999986411 358888999999999998755
Q ss_pred CCCch------------hHhhhhHHH----------------hhcCCCHHHHHHHHHHCCC-cEEEEEEcCccc
Q 022929 214 VYPTF------------WLSRYFADV----------------WMLFPKEEEYIEWFQKAGF-KDVQLKRIGPKW 258 (290)
Q Consensus 214 ~~~~~------------~~~~~~~~~----------------~~~~~~~~~~~~ll~~aGf-~~v~~~~~~~~~ 258 (290)
..+.. .+...+.++ -..+++.+++..++++.|+ ++.+.+.+...|
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~ 284 (359)
T 1m6e_X 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYW 284 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEET
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeecc
Confidence 44321 122222111 1135789999999999964 888777664444
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-09 Score=96.11 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=78.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCCC----CC-ceEEEcCCCCC-C-CCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL----KE-CKIVEGDAEDL-P-FPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~----~~-v~~~~~d~~~l-~-~~~~~~D~i~~ 181 (290)
++.+|||++||+|.+++.++...++ .+|+++|+++.+++.+++|... ++ ++++.+|+.++ . ...++||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 6789999999999999999997544 6899999999999999988542 23 78899998542 1 11346999998
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.- ...+..+++.+.+.|++||.|++..
T Consensus 132 DP----~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP----FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 64 1234578999999999999888865
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.7e-09 Score=90.17 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=60.2
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC--CeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~ 173 (290)
.+...+++.+... ++.+|||||||+|.++..+++..+. .+|+++|+++.+++.++++. ..+++++++|+.++++++
T Consensus 29 ~i~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 29 GVIDAIVAAIRPE-RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-GELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHHHHCCC-TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-GGGEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCC-CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-CCCcEEEECChhcCChhH
Confidence 3455555555543 7889999999999999999988421 33999999999999999874 457999999998877543
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.5e-08 Score=84.12 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=82.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC--------CCCCceEEEcCCCCC-CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLKECKIVEGDAEDL-PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--------~~~~v~~~~~d~~~l-~~~~~~~D~i~ 180 (290)
+.++||-||.|.|..+..+++..+..+++.||+++.+++.+++.+ ..++++++.+|.... ....++||+|+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi 162 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence 578999999999999999999877789999999999999998764 246799999999653 34456799999
Q ss_pred ecCcccccCC----HHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
....-..-+. -..+++.+.+.|+|||.++...
T Consensus 163 ~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 163 SDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp ESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 7532111111 1378999999999999998853
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-08 Score=96.34 Aligned_cols=122 Identities=10% Similarity=0.003 Sum_probs=85.7
Q ss_pred CcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC--------------------------------------
Q 022929 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-------------------------------------- 132 (290)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------------------------------- 132 (290)
.+..+.++..++...... ++..|||.+||+|.+++.++...
T Consensus 172 apl~e~LAa~ll~~~~~~-~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~ 250 (703)
T 3v97_A 172 APIKETLAAAIVMRSGWQ-PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARK 250 (703)
T ss_dssp CSSCHHHHHHHHHHTTCC-TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhCCC-CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhh
Confidence 456677877777776553 67899999999999999887641
Q ss_pred ----CCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC--CCCCCccEEEecCccc-ccC---CHHHHHHHH
Q 022929 133 ----DAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAGSIE-YWP---DPQRGIREA 198 (290)
Q Consensus 133 ----~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~--~~~~~~D~i~~~~~l~-~~~---~~~~~l~~~ 198 (290)
+..+++|+|+++.+++.|+.|+.. ..+++.++|+.++. ...++||+|+++--.. .+. +...+.+.+
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l 330 (703)
T 3v97_A 251 GLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLL 330 (703)
T ss_dssp HHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHH
T ss_pred ccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHH
Confidence 125899999999999999988432 23789999997763 3333799999973322 111 223344444
Q ss_pred H---hccCCCCEEEEEcc
Q 022929 199 Y---RVLKLGGKACIIGP 213 (290)
Q Consensus 199 ~---~~L~pgG~l~i~~~ 213 (290)
. +.+.|||.+++.+.
T Consensus 331 ~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 331 GRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHHHHCTTCEEEEEES
T ss_pred HHHHHhhCCCCeEEEEeC
Confidence 4 44458999998754
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.8e-09 Score=87.72 Aligned_cols=127 Identities=21% Similarity=0.236 Sum_probs=84.3
Q ss_pred CCCEEEEEcCccchhHHHHHhh-------CCC-----CeEEEEeCCH---HHHHH-----------HhhhC---------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH-------VDA-----KNVTILDQSP---HQLAK-----------AKQKE--------- 154 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~-------~~~-----~~v~~vD~s~---~~~~~-----------a~~~~--------- 154 (290)
+..+|||||+|+|..+..+++. .|. .+++++|..+ +.+.. +++..
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 5679999999999988876654 453 5899999765 44443 33321
Q ss_pred ------C--CCCceEEEcCCCC-CCCC-C---CCccEEEecC-cccccCC--HHHHHHHHHhccCCCCEEEEEccCCCch
Q 022929 155 ------P--LKECKIVEGDAED-LPFP-T---DYADRYVSAG-SIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTF 218 (290)
Q Consensus 155 ------~--~~~v~~~~~d~~~-l~~~-~---~~~D~i~~~~-~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 218 (290)
. ..+++++.+|+.+ ++.. + ..||+|+... .-..-++ ...+++.+.++|+|||.++.-+
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys------ 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------ 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC------
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe------
Confidence 1 1246788899854 3322 2 2699999842 2211222 2579999999999999987522
Q ss_pred hHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 219 WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
....+...|.++||++.+..-.+.
T Consensus 214 --------------aa~~vrr~L~~aGF~v~~~~g~~~ 237 (257)
T 2qy6_A 214 --------------SAGFVRRGLQEAGFTMQKRKGFGR 237 (257)
T ss_dssp --------------CBHHHHHHHHHHTEEEEEECCSTT
T ss_pred --------------CCHHHHHHHHHCCCEEEeCCCCCC
Confidence 123567888889999776655543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=9.4e-08 Score=80.64 Aligned_cols=107 Identities=11% Similarity=0.037 Sum_probs=73.2
Q ss_pred CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 107 LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 107 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
..+++.+|||+|||+|.++..+++..+...++++|++.+.......... ..++..+..+++...+.+++||+|+|..+.
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~ap 150 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGE 150 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCcc
Confidence 3457889999999999999998887555688899987443100110000 014555677765556777789999998766
Q ss_pred cccCCH-----H--HHHHHHHhccCCC-CEEEEEccC
Q 022929 186 EYWPDP-----Q--RGIREAYRVLKLG-GKACIIGPV 214 (290)
Q Consensus 186 ~~~~~~-----~--~~l~~~~~~L~pg-G~l~i~~~~ 214 (290)
+ .... . .+++.+.++|+|| |.+++-.+.
T Consensus 151 n-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 151 S-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp C-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred C-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 5 3221 1 3568889999999 999885443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-08 Score=86.12 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=61.1
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~~ 174 (290)
.+...+++.+... ++.+|||||||+|.++. +. ..+..+|+++|+++.+++.++++... .+++++++|+.++++++.
T Consensus 8 ~i~~~iv~~~~~~-~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 8 FVIDSIVSAINPQ-KGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHHHHCCC-TTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH
T ss_pred HHHHHHHHhcCCC-CcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHh
Confidence 3444555555443 77899999999999999 64 42222399999999999999987643 479999999988765321
Q ss_pred -----CccEEEecC
Q 022929 175 -----YADRYVSAG 183 (290)
Q Consensus 175 -----~~D~i~~~~ 183 (290)
..|.|+++.
T Consensus 85 ~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 85 AEKMGQPLRVFGNL 98 (252)
T ss_dssp HHHHTSCEEEEEEC
T ss_pred hcccCCceEEEECC
Confidence 235666553
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.4e-08 Score=92.61 Aligned_cols=138 Identities=14% Similarity=0.041 Sum_probs=92.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC------------------CCeEEEEeCCHHHHHHHhhhCC---CCC-----ceEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD------------------AKNVTILDQSPHQLAKAKQKEP---LKE-----CKIVE 163 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~------------------~~~v~~vD~s~~~~~~a~~~~~---~~~-----v~~~~ 163 (290)
++.+|+|.+||+|.++..+++... ...++|+|+++.+++.|+.+.. ... +.+.+
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 678999999999999988876531 2479999999999999987632 222 67889
Q ss_pred cCCCCCC-CCCCCccEEEecCcccccC-------------C-HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh
Q 022929 164 GDAEDLP-FPTDYADRYVSAGSIEYWP-------------D-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228 (290)
Q Consensus 164 ~d~~~l~-~~~~~~D~i~~~~~l~~~~-------------~-~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~ 228 (290)
+|....+ ....+||+|+++--+.... + ...++..+.+.|+|||++.++.+... .. ..
T Consensus 249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~---L~---~~-- 320 (541)
T 2ar0_A 249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV---LF---EG-- 320 (541)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH---HH---CC--
T ss_pred CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcc---ee---cC--
Confidence 9886533 3345799999964433221 1 23689999999999999988754210 00 00
Q ss_pred hcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 229 MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 229 ~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
.....+++.|.+.+ .+..+..++....
T Consensus 321 ---~~~~~iR~~L~~~~-~l~~ii~Lp~~~F 347 (541)
T 2ar0_A 321 ---GKGTDIRRDLMDKC-HLHTILRLPTGIF 347 (541)
T ss_dssp ---THHHHHHHHHHHHE-EEEEEEECCSSCS
T ss_pred ---cHHHHHHHHHhhcC-CEEEEEEcCcCcc
Confidence 01245666665544 4566677776543
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.58 E-value=9e-07 Score=82.76 Aligned_cols=139 Identities=13% Similarity=0.055 Sum_probs=97.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC---CCCeEEEEeCCHHHHHHHhhhCC---C--CCceEEEcCCCCC--C-CCCCCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEP---L--KECKIVEGDAEDL--P-FPTDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~---~--~~v~~~~~d~~~l--~-~~~~~~D 177 (290)
.++.+|+|.+||+|.++..+++.. +...++|+|+++.+...|+.+.. . .++.+.++|.... | ....+||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 367899999999999999888874 25789999999999999987632 1 3467899998654 3 3456799
Q ss_pred EEEecCcc--cc-----------------cC---C-HHHHHHHHHhccC-CCCEEEEEccCCCchhHhhhhHHHhhcCCC
Q 022929 178 RYVSAGSI--EY-----------------WP---D-PQRGIREAYRVLK-LGGKACIIGPVYPTFWLSRYFADVWMLFPK 233 (290)
Q Consensus 178 ~i~~~~~l--~~-----------------~~---~-~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (290)
+|+++--. .+ ++ + .-.++..+.+.|+ |||++.++.+..- .. .. ..
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~---Lf---~~-----~~ 368 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGV---LF---RG-----NA 368 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHH---HH---CC-----TH
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchH---hh---CC-----ch
Confidence 99985111 11 10 1 1248899999999 9999988765321 00 00 01
Q ss_pred HHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 234 EEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 234 ~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
...+++.|-+.+. +..+..++.+..
T Consensus 369 ~~~iRk~Lle~~~-l~~II~LP~~lF 393 (542)
T 3lkd_A 369 EGTIRKALLEEGA-IDTVIGLPANIF 393 (542)
T ss_dssp HHHHHHHHHHTTC-EEEEEECCSSCS
T ss_pred hHHHHHHHHhCCc-eeEEEEcccccc
Confidence 3567777777655 667777876544
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-08 Score=86.92 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCH-------HHHHHHhhhCCC----CCceEEEcCCCCC-C-CCC--C
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP-------HQLAKAKQKEPL----KECKIVEGDAEDL-P-FPT--D 174 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~-------~~~~~a~~~~~~----~~v~~~~~d~~~l-~-~~~--~ 174 (290)
++.+|||+|||+|.++..++.. +.+|+++|+|+ ++++.|+++... ++++++++|+.++ + +++ +
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 5689999999999999999997 67999999999 999999876421 3589999998663 2 333 5
Q ss_pred CccEEEecCcccc
Q 022929 175 YADRYVSAGSIEY 187 (290)
Q Consensus 175 ~~D~i~~~~~l~~ 187 (290)
+||+|++.-.+.+
T Consensus 161 ~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 161 KPDIVYLDPMYPE 173 (258)
T ss_dssp CCSEEEECCCC--
T ss_pred CccEEEECCCCCC
Confidence 6999999776654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.7e-08 Score=94.05 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=70.9
Q ss_pred CCCEEEEEcCccchhHHHHHhh---C----------CCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCCCC-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH---V----------DAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPFP- 172 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~---~----------~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~~~- 172 (290)
.+..|||||||+|.++...+.. . ...+|++||-|+.++...+.. .-.+.|+++.+|++++..+
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccc
Confidence 3568999999999996432211 1 134999999999766554432 2235699999999987662
Q ss_pred ----CCCccEEEecCcccccCC--HHHHHHHHHhccCCCCEEE
Q 022929 173 ----TDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 173 ----~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~ 209 (290)
.+++|+|+|-..-....+ ....|..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 456999999766443322 2367888889999999864
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-07 Score=87.89 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=68.6
Q ss_pred CCCEEEEEcCccchhHHHH---HhhCC-CCeEEEEeCCHHHHHHHhhh----CCCCCceEEEcCCCCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGI---VKHVD-AKNVTILDQSPHQLAKAKQK----EPLKECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l---~~~~~-~~~v~~vD~s~~~~~~a~~~----~~~~~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
....|||+|||+|.+.... ++... ..+|++||-|+.+. .+++. .-.++|+++.+|++++..++ ++|+|+|
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVtVI~gd~eev~LPE-KVDIIVS 434 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVTVVSSDMREWVAPE-KADIIVS 434 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEEEEESCTTTCCCSS-CEEEEEC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEEEEeCcceeccCCc-ccCEEEE
Confidence 4468999999999984444 33321 13789999998543 34332 22356999999999988775 5999998
Q ss_pred cCcc---cccCCHHHHHHHHHhccCCCCEEE
Q 022929 182 AGSI---EYWPDPQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 182 ~~~l---~~~~~~~~~l~~~~~~L~pgG~l~ 209 (290)
-.+- .+...+ .++....++|||||.++
T Consensus 435 EwMG~fLl~E~ml-evL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 435 ELLGSFADNELSP-ECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCBTTBGGGCHH-HHHHHHGGGEEEEEEEE
T ss_pred EcCcccccccCCH-HHHHHHHHhcCCCcEEc
Confidence 5443 233333 67888899999999864
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.7e-08 Score=87.99 Aligned_cols=71 Identities=23% Similarity=0.370 Sum_probs=59.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCC-CC-CCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDL-PF-PTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l-~~-~~~~~D~i~~~ 182 (290)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|++|.. ..+++++++|+.+. +. .+++||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4799999999999999999887 6799999999999999998843 24689999999763 32 23469999984
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=82.21 Aligned_cols=137 Identities=13% Similarity=0.024 Sum_probs=92.2
Q ss_pred CEEEEEcCccchhHHHHHhhCC---------------CCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC-C
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVD---------------AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP-F 171 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~---------------~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~-~ 171 (290)
.+|+|.+||+|.++..+++... ...++|+|+++.++..|+.+... .++.+.++|....+ .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999988765421 35899999999999999876321 22333677765443 4
Q ss_pred CCCCccEEEecCcccc-------------------------cC---CH-HHHHHHHHhccCCCCEEEEEccCCCchhHhh
Q 022929 172 PTDYADRYVSAGSIEY-------------------------WP---DP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~-------------------------~~---~~-~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 222 (290)
...+||+|+++--... .+ +. -.++..+.+.|+|||++.++.+..-. .
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L---~- 401 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSM---S- 401 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHH---H-
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhh---h-
Confidence 4568999999522221 11 11 25889999999999999887643210 0
Q ss_pred hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 223 YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
.. -.....+++.|.+.+. +..+..++.+..
T Consensus 402 --~~----~~~~~~iRk~Lle~~~-l~aII~LP~~lF 431 (544)
T 3khk_A 402 --SN----TNNEGEIRKTLVEQDL-VECMVALPGQLF 431 (544)
T ss_dssp --CC----GGGHHHHHHHHHHTTC-EEEEEECCTTBC
T ss_pred --cC----cchHHHHHHHHHhCCc-HhEEEECCCCCC
Confidence 00 0024578888877765 677778876554
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-06 Score=69.70 Aligned_cols=95 Identities=15% Similarity=0.006 Sum_probs=70.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC------CCCceEEEcCCCCC--------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDL-------------- 169 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~l-------------- 169 (290)
+..+||||||| .-+..+++. ++.+|+.+|.+++..+.|+++.. ..+++++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 56899999995 566666664 47899999999999999987632 34689999996432
Q ss_pred -C--------C-CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 170 -P--------F-PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 170 -~--------~-~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+ . ..++||+|+...- .....+..+.+.|+|||.+++-+
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeC
Confidence 1 1 2367999998653 22356667789999999995543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=79.95 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=61.6
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh-------CCC-----CCceEEEcCCCC-CCCCCCCccE
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-------EPL-----KECKIVEGDAED-LPFPTDYADR 178 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-------~~~-----~~v~~~~~d~~~-l~~~~~~~D~ 178 (290)
.+|||+|||+|..+..++.. +.+|+++|.++.+.+.++++ ... .+++++++|..+ ++...++||+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence 89999999999999999998 67899999999764444332 221 358899999855 2322236999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGG 206 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG 206 (290)
|++.-...+-. ....+++..+.|++.+
T Consensus 168 V~lDP~y~~~~-~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 168 VYLDPMFPHKQ-KSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEECCCCCCCC-C-----HHHHHHHHHS
T ss_pred EEEcCCCCCcc-cchHHHHHHHHHHHhh
Confidence 99987665432 2234445555555433
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-07 Score=79.96 Aligned_cols=106 Identities=16% Similarity=0.079 Sum_probs=70.9
Q ss_pred CCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-CCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 108 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
..++.+|||+|||+|.++..+++..+...++|+|++..+...+.... ...++..+..++....++..++|+|+|.....
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmApn 167 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGES 167 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCccC
Confidence 34788999999999999999987766678999999765322111100 01133344444333335567899999987766
Q ss_pred ccCCH-----H--HHHHHHHhccCCC--CEEEEEccC
Q 022929 187 YWPDP-----Q--RGIREAYRVLKLG--GKACIIGPV 214 (290)
Q Consensus 187 ~~~~~-----~--~~l~~~~~~L~pg--G~l~i~~~~ 214 (290)
.... . .+++-+.++|+|| |.+++-.+.
T Consensus 168 -sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 168 -SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred -CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 3332 1 3577778999999 999886543
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-07 Score=70.90 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=58.3
Q ss_pred CCCEEEEEcCccc-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCC--CCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT--DYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~--~~~D~i~~~~~l~ 186 (290)
++.+|||||||+| ..+..|++.. +..|+++|+++.+++ +++.|+.+ |..+ +.||+|++.+--
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~------------~v~dDiF~-P~~~~Y~~~DLIYsirPP- 99 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG------------IVRDDITS-PRMEIYRGAALIYSIRPP- 99 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT------------EECCCSSS-CCHHHHTTEEEEEEESCC-
T ss_pred CCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc------------eEEccCCC-CcccccCCcCEEEEcCCC-
Confidence 5689999999999 6999999843 789999999887655 88899987 4332 359999875432
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
++.+..+.++.+.. |.-+++..
T Consensus 100 --~El~~~i~~lA~~v--~adliI~p 121 (153)
T 2k4m_A 100 --AEIHSSLMRVADAV--GARLIIKP 121 (153)
T ss_dssp --TTTHHHHHHHHHHH--TCEEEEEC
T ss_pred --HHHHHHHHHHHHHc--CCCEEEEc
Confidence 23334444444433 45565543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.6e-06 Score=75.16 Aligned_cols=121 Identities=14% Similarity=0.053 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
+++.++||+||.+|.++..++++ +.+|++||+.+ +-.... ..++++++..|........+++|+|+|..+.
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~-l~~~l~---~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~--- 280 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGP-MAQSLM---DTGQVTWLREDGFKFRPTRSNISWMVCDMVE--- 280 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSC-CCHHHH---TTTCEEEECSCTTTCCCCSSCEEEEEECCSS---
T ss_pred CCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhh-cChhhc---cCCCeEEEeCccccccCCCCCcCEEEEcCCC---
Confidence 48999999999999999999988 78999999863 212222 2358999999998877667789999997765
Q ss_pred CCHHHHHHHHHhccCCC---CEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 189 PDPQRGIREAYRVLKLG---GKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
++...+..+.++|..+ +.++..-.....- . ..... ....+.+.|...||.
T Consensus 281 -~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~-~-~~l~~------~~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 281 -KPAKVAALMAQWLVNGWCRETIFNLKLPMKKR-Y-EEVSH------NLAYIQAQLDEHGIN 333 (375)
T ss_dssp -CHHHHHHHHHHHHHTTSCSEEEEEEECCSSSH-H-HHHHH------HHHHHHHHHHHTTCC
T ss_pred -ChHHhHHHHHHHHhccccceEEEEEEecccch-H-HHHHH------HHHHHHHHHHhcCcc
Confidence 4555666666665554 4444433222110 0 00111 245677889999996
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.34 E-value=8.5e-07 Score=75.28 Aligned_cols=80 Identities=25% Similarity=0.311 Sum_probs=64.3
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP 172 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~ 172 (290)
...+++.+.. +++..+||++||.|..+..+++. +.+|+|+|.++.+++.|++ ....+++++++|+.+++ ..
T Consensus 11 l~e~le~L~~-~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 11 YQEALDLLAV-RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHLPGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHHHHTC-CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhhCC-CCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hccCCEEEEECCcchHHHHHHHcC
Confidence 3444454444 37889999999999999999998 6799999999999999998 65568999999997753 22
Q ss_pred CCCccEEEe
Q 022929 173 TDYADRYVS 181 (290)
Q Consensus 173 ~~~~D~i~~ 181 (290)
.+++|.|++
T Consensus 87 ~~~vDgIL~ 95 (285)
T 1wg8_A 87 VERVDGILA 95 (285)
T ss_dssp CSCEEEEEE
T ss_pred CCCcCEEEe
Confidence 246999997
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=74.00 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=71.9
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh-CCCCCceEEEcCCCCCCCCCCCccEE
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
+.+. .+..++.+|||+||++|.++..+++..+...|.|+|+........... ....++.....++....+..+.+|+|
T Consensus 73 i~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlV 151 (300)
T 3eld_A 73 LHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTL 151 (300)
T ss_dssp HHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEE
T ss_pred HHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEE
Confidence 3344 455689999999999999999999876567899999965321100000 00112333333333333456679999
Q ss_pred EecCcccccCCH-------HHHHHHHHhccCCC-CEEEEEccC
Q 022929 180 VSAGSIEYWPDP-------QRGIREAYRVLKLG-GKACIIGPV 214 (290)
Q Consensus 180 ~~~~~l~~~~~~-------~~~l~~~~~~L~pg-G~l~i~~~~ 214 (290)
+|..... .... ..+++-+.++|+|| |.+++-.+.
T Consensus 152 lsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 152 LCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp EECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred eecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 9976655 3332 14577778999999 999886443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=83.01 Aligned_cols=136 Identities=12% Similarity=0.038 Sum_probs=89.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC---CCeEEEEeCCHHHHHHH--hhhCCC----C---CceEEEcCCCCC-CCCCCCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD---AKNVTILDQSPHQLAKA--KQKEPL----K---ECKIVEGDAEDL-PFPTDYA 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~---~~~v~~vD~s~~~~~~a--~~~~~~----~---~v~~~~~d~~~l-~~~~~~~ 176 (290)
++.+|||.|||+|.++..+++..+ ..+++|+|+++.+++.| +.+... . ...+...|+... +....+|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 578999999999999999998764 35899999999999999 544322 1 124455555442 2234579
Q ss_pred cEEEecCcccc-cC---------------------------C-HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH
Q 022929 177 DRYVSAGSIEY-WP---------------------------D-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227 (290)
Q Consensus 177 D~i~~~~~l~~-~~---------------------------~-~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 227 (290)
|+|+++--... .. + ...+++.+.+.|+|||.+.++.+..- +... .
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~---Lf~s--g- 474 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY---LTAQ--G- 474 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH---HHCC--S-
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH---hccC--C-
Confidence 99999533311 00 1 23477889999999999998865421 1000 0
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 228 WMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 228 ~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.....+++.|.+. +.+..+..++.
T Consensus 475 ----~~~kkLRk~LLe~-~~I~aIIdLP~ 498 (878)
T 3s1s_A 475 ----NESKAFREFLVGN-FGLEHIFLYPR 498 (878)
T ss_dssp ----HHHHHHHHHHTTT-TCEEEEEECCB
T ss_pred ----hHHHHHHHHHHhC-CCeEEEEECCC
Confidence 0135666666654 45677788876
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=5.6e-06 Score=73.35 Aligned_cols=102 Identities=20% Similarity=0.123 Sum_probs=76.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----------CCceEEEcCCCCC----CCCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----------KECKIVEGDAEDL----PFPTD 174 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------~~v~~~~~d~~~l----~~~~~ 174 (290)
++++||-||.|.|..+..+++. +..+++.||+++.+++.+++.+.. ++++++..|.... .-..+
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 5689999999999999999986 458999999999999999986431 3477888887432 11235
Q ss_pred CccEEEecCcccc-cCC---------HHHHHHHHHhccCCCCEEEEEc
Q 022929 175 YADRYVSAGSIEY-WPD---------PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 175 ~~D~i~~~~~l~~-~~~---------~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+||+|+....-.. .++ .+.+++.+.+.|+|||.++...
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 6999997532111 111 1367889999999999998753
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-06 Score=75.58 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---------CCCceEEEcCCCCCC-CCCCCccE
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LKECKIVEGDAEDLP-FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~v~~~~~d~~~l~-~~~~~~D~ 178 (290)
+++.+|||+++|.|.-+..+++......++++|+++.-+...+++.. ..++.+...|...++ ...+.||.
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~ 226 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR 226 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence 48899999999999999999988666789999999988877776531 135777788876543 33457999
Q ss_pred EEe----cC----cccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 179 YVS----AG----SIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 179 i~~----~~----~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
|++ +. ++..-++ ..++|+.+.++|||||.|+.+++...
T Consensus 227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 986 21 1111111 12588899999999999998877654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.6e-07 Score=100.09 Aligned_cols=142 Identities=21% Similarity=0.187 Sum_probs=69.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-----CCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-CCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-----AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-PFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-~~~~~~~D~i~~~~ 183 (290)
+..+|||||.|+|..+..+.+... ..+|+..|+|+...+.+++++..-+++.-..|..+. ++...+||+|++.+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 567999999999987666555432 247999999988777777654211222222233331 33455699999999
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh---hhHH---HhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR---YFAD---VWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
++|..++....+++++++|||||.+++.+.... ..+.. .+.. .+..+.+.++|.++|+++||..+...
T Consensus 1320 vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~-~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~~~ 1393 (2512)
T 2vz8_A 1320 ALATLGDPAVAVGNMAATLKEGGFLLLHTLLAG-HPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVALK 1393 (2512)
T ss_dssp C--------------------CCEEEEEEC---------------------------CTTTTSSTTTTEEEEEEE
T ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEecccc-ccccccccccccccccCCcccCHHHHHHHHHhCCCceeeec
Confidence 999888888999999999999999988764321 00000 0000 11223467788899999999887664
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=67.38 Aligned_cols=111 Identities=16% Similarity=0.079 Sum_probs=74.7
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHH--HhhhCCCCCceEEEc-CCCCCCCCCCCc
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK--AKQKEPLKECKIVEG-DAEDLPFPTDYA 176 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~--a~~~~~~~~v~~~~~-d~~~l~~~~~~~ 176 (290)
++.+...+ .++.+|||+||++|.++..++...+...|+|+|+...-.+. ..+.+..+.+.++.. |+..++. .++
T Consensus 85 ei~~~~~l-~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~ 161 (321)
T 3lkz_A 85 WLVERRFL-EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECC 161 (321)
T ss_dssp HHHHTTSC-CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCC
T ss_pred HHHHhcCC-CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCC
Confidence 33444333 47889999999999999988888766789999995431100 001122233677776 8766653 459
Q ss_pred cEEEecCcccccCCHH-------HHHHHHHhccCCC-CEEEEEccC
Q 022929 177 DRYVSAGSIEYWPDPQ-------RGIREAYRVLKLG-GKACIIGPV 214 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~-------~~l~~~~~~L~pg-G~l~i~~~~ 214 (290)
|+|+|.-. +.-+++. ++|+-+.++|++| |.+++-...
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 99999766 6566643 3666678899998 888775433
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=65.44 Aligned_cols=110 Identities=18% Similarity=0.103 Sum_probs=74.6
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHH--HhhhCCCCCceEEEc-CCCCCCCCCCCc
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK--AKQKEPLKECKIVEG-DAEDLPFPTDYA 176 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~--a~~~~~~~~v~~~~~-d~~~l~~~~~~~ 176 (290)
++.+.. ..+++.+|||+||++|.++..++...+..+|+|+|+-..-.+. ..+....+.++|..+ |+..++- .++
T Consensus 69 ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~ 145 (267)
T 3p8z_A 69 WFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKC 145 (267)
T ss_dssp HHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCC
T ss_pred HHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccc
Confidence 333444 3348889999999999999999888766789999995432210 001223356889988 8765543 459
Q ss_pred cEEEecCcccccCCHH-------HHHHHHHhccCCCCEEEEEccC
Q 022929 177 DRYVSAGSIEYWPDPQ-------RGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~-------~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
|.|+|...- .-+++. ++|+-+.++|++ |.+++-...
T Consensus 146 DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 146 DTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp SEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred cEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 999997655 344432 366677899998 777775433
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-05 Score=65.65 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCc---eEEEc-CCCCCCCCCCCccEEEe
Q 022929 107 LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KEC---KIVEG-DAEDLPFPTDYADRYVS 181 (290)
Q Consensus 107 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v---~~~~~-d~~~l~~~~~~~D~i~~ 181 (290)
+.+++.+|||+||+.|.++..+++..+...|.|.++..+. . ....... .++ .|.++ |+.+++ ..++|+|+|
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLS 145 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLC 145 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEE
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEe
Confidence 5568999999999999999999887322344555553321 0 0001101 344 44446 887643 446999999
Q ss_pred cCcccccCCHH-------HHHHHHHhccCCCC-EEEEEccC
Q 022929 182 AGSIEYWPDPQ-------RGIREAYRVLKLGG-KACIIGPV 214 (290)
Q Consensus 182 ~~~l~~~~~~~-------~~l~~~~~~L~pgG-~l~i~~~~ 214 (290)
...-. ..+.. ..++-+.++|+||| .+++-.+.
T Consensus 146 DMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 146 DIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 76554 33321 24666779999999 88776544
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.96 E-value=3e-05 Score=66.30 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=84.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-----CCCeEEEEeCCHH--------------------------HHHHHhhhC---C
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPH--------------------------QLAKAKQKE---P 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-----~~~~v~~vD~s~~--------------------------~~~~a~~~~---~ 155 (290)
....|||+|+..|..+..++... ++.+++++|..+. .++.++++. .
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 46799999999999888887654 3688999996421 234455442 2
Q ss_pred --CCCceEEEcCCCC-CC-CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcC
Q 022929 156 --LKECKIVEGDAED-LP-FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231 (290)
Q Consensus 156 --~~~v~~~~~d~~~-l~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 231 (290)
..+++++.+|+.+ ++ ++.++||+|+.-.-. -......++.+...|+|||.+++-+... + ..
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~~~---~-----~G----- 250 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDYMM---C-----PP----- 250 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSCTT---C-----HH-----
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCCCC---C-----HH-----
Confidence 3679999999843 33 445679999986532 1223468999999999999887766421 0 11
Q ss_pred CCHHHHHHHHHHCCCc
Q 022929 232 PKEEEYIEWFQKAGFK 247 (290)
Q Consensus 232 ~~~~~~~~ll~~aGf~ 247 (290)
..+.|.+++++.|++
T Consensus 251 -~~~Av~Ef~~~~~i~ 265 (282)
T 2wk1_A 251 -CKDAVDEYRAKFDIA 265 (282)
T ss_dssp -HHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHhcCCc
Confidence 135777888888875
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.76 E-value=3.9e-05 Score=66.32 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=50.1
Q ss_pred CcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC
Q 022929 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (290)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~ 154 (290)
......+...++.... .++..|||++||+|..+..+++. +.+++|+|+++.+++.|+++.
T Consensus 218 ~~~p~~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 218 APFPLELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERF 277 (297)
T ss_dssp CCSCHHHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH
Confidence 3455667777776654 37899999999999999998887 789999999999999998774
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00019 Score=67.03 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=93.0
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-------------CCeEEEEeCCHHHHHHHhhhC---CCCCc
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQKE---PLKEC 159 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~---~~~~v 159 (290)
.++..+++.+.. .++.+|+|.+||+|.++..+.+... ...++|+|+++.+...|+-+. .....
T Consensus 204 ~Vv~lmv~l~~p-~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~ 282 (530)
T 3ufb_A 204 PVVRFMVEVMDP-QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYP 282 (530)
T ss_dssp HHHHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHhhcc-CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccc
Confidence 344444444433 3678999999999999987765321 246999999999999998652 12234
Q ss_pred eEEEcCCCCCCC----CCCCccEEEecCccccc---------------CCH-HHHHHHHHhccC-------CCCEEEEEc
Q 022929 160 KIVEGDAEDLPF----PTDYADRYVSAGSIEYW---------------PDP-QRGIREAYRVLK-------LGGKACIIG 212 (290)
Q Consensus 160 ~~~~~d~~~l~~----~~~~~D~i~~~~~l~~~---------------~~~-~~~l~~~~~~L~-------pgG~l~i~~ 212 (290)
.+..+|....+. ...+||+|+++--+..- .+. ..++..+.+.|| |||++.++.
T Consensus 283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 567777755442 23469999996333211 011 246677777776 799998875
Q ss_pred cCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 213 PVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
+... .+.. -....+++.|-+. +.+..+..++....
T Consensus 363 P~g~------Lf~~-----~~~~~iRk~Lle~-~~l~aII~LP~~~F 397 (530)
T 3ufb_A 363 PNGT------LFSD-----GISARIKEELLKN-FNLHTIVRLPEGVF 397 (530)
T ss_dssp EHHH------HHCC-----THHHHHHHHHHHH-SEEEEEEECCTTTT
T ss_pred cchh------hhcc-----chHHHHHHHHhhc-CEEEEEEECCcccC
Confidence 5210 0000 0123566666654 44777788876543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.4e-05 Score=67.01 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=62.4
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CC-
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP- 172 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~- 172 (290)
.+++.+.. +++..++|..||.|..+..+++.. |..+|+|+|.++++++.++ ++...++++++++..++. ..
T Consensus 48 Evl~~L~i-~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~~~Rv~lv~~nF~~l~~~L~~~g~ 125 (347)
T 3tka_A 48 EAVNGLNI-RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TIDDPRFSIIHGPFSALGEYVAERDL 125 (347)
T ss_dssp HHHHHTCC-CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHhhCC-CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhcCCcEEEEeCCHHHHHHHHHhcCC
Confidence 34444443 378999999999999999999885 5689999999999999995 555567999999887652 11
Q ss_pred CCCccEEEe
Q 022929 173 TDYADRYVS 181 (290)
Q Consensus 173 ~~~~D~i~~ 181 (290)
.+++|.|+.
T Consensus 126 ~~~vDgILf 134 (347)
T 3tka_A 126 IGKIDGILL 134 (347)
T ss_dssp TTCEEEEEE
T ss_pred CCcccEEEE
Confidence 125899987
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=62.89 Aligned_cols=142 Identities=13% Similarity=0.133 Sum_probs=97.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC------------------------CCCceEEEcC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------------------LKECKIVEGD 165 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------------------------~~~v~~~~~d 165 (290)
+...|+.+|||.......+....++..++-+|. |++++.-++... ..+..++..|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 568899999999999988887656788888998 777766554311 2467888899
Q ss_pred CCCCC--------C-CCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCC---chhHhhh----hHH-
Q 022929 166 AEDLP--------F-PTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP---TFWLSRY----FAD- 226 (290)
Q Consensus 166 ~~~l~--------~-~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~---~~~~~~~----~~~- 226 (290)
+.+.. . ..+...++++-.++.|++.. .++++.+...+ |+|.+++.+...+ ....... +..
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~~ 254 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKES 254 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhhcc
Confidence 97631 1 23457899999999999754 36888888877 7777766555443 1111111 111
Q ss_pred H------hhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 227 V------WMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 227 ~------~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
. ...|.+.++..+.|.++||+ ....+.
T Consensus 255 rg~~l~~~~~y~s~~~~~~rl~~~Gf~--~a~d~~ 287 (334)
T 1rjd_A 255 RNLEMPTLMTYNSKEKYASRWSAAPNV--IVNDMW 287 (334)
T ss_dssp HCCCCTTTTTTCSHHHHHGGGTTSSEE--EEEEHH
T ss_pred cCCcccccccCCCHHHHHHHHHHCCCC--cccCHH
Confidence 0 11356899999999999997 444443
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00013 Score=64.25 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=58.6
Q ss_pred HHHHHhhccccCCCC-----CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC
Q 022929 95 EDMRDDALEPADLSN-----RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL 169 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l 169 (290)
..+.+.+++.+.... ++..|||||.|.|.++..|++.....+++++|+++..+...++.....+++++.+|+.++
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 345555555554432 368999999999999999998644568999999999999998766456899999999654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0019 Score=55.53 Aligned_cols=127 Identities=16% Similarity=0.159 Sum_probs=77.6
Q ss_pred CCCEEEEEcCccchhHHHHH----hhCCC--CeEEEEeCC------------HHHHHHHhhhCC---CCC--ceEEEcCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIV----KHVDA--KNVTILDQS------------PHQLAKAKQKEP---LKE--CKIVEGDA 166 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~----~~~~~--~~v~~vD~s------------~~~~~~a~~~~~---~~~--v~~~~~d~ 166 (290)
+.-+|||+|-|+|....... +..|. .+++.+|-. .+..+...+... ..+ +++..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 34689999999998654332 23344 345666642 122222222211 123 45677887
Q ss_pred CC-CC-CCCCCccEEEecCcccccCCH----HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHH
Q 022929 167 ED-LP-FPTDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240 (290)
Q Consensus 167 ~~-l~-~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (290)
.+ ++ +.+.++|+++... +..-.+| ..+++.+.++++|||.+.-- -....++.-
T Consensus 176 ~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTY--------------------taag~VRR~ 234 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSY--------------------SSSLSVRKS 234 (308)
T ss_dssp HHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEES--------------------CCCHHHHHH
T ss_pred HHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEE--------------------eCcHHHHHH
Confidence 33 33 3444699999743 3333444 47999999999999988531 134678899
Q ss_pred HHHCCCcEEEEEEcCcc
Q 022929 241 FQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 241 l~~aGf~~v~~~~~~~~ 257 (290)
|.++||++.++.-.+.+
T Consensus 235 L~~aGF~V~k~~G~g~K 251 (308)
T 3vyw_A 235 LLTLGFKVGSSREIGRK 251 (308)
T ss_dssp HHHTTCEEEEEECC---
T ss_pred HHHCCCEEEecCCCCCC
Confidence 99999998877665544
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00029 Score=59.50 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=49.6
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
+....+...++.... .++..|||..||+|..+..+.+. +.+++|+|+++.+++.++++..
T Consensus 196 ~~p~~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 196 PKPRDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CCCHHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHH
Confidence 344566666666543 47899999999999999998887 7899999999999999998754
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00083 Score=56.99 Aligned_cols=128 Identities=12% Similarity=0.084 Sum_probs=91.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCC-CC---CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAED-LP---FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~-l~---~~~~~~D~i~~~~~ 184 (290)
.+..+||+=+|||.+++.+... +.+++.+|.++...+..++|... .+++++..|... +. -+..+||+|++.--
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred cCCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 3466899999999999999884 68999999999999999999764 458888888632 11 12346999998655
Q ss_pred ccccCCHHHHHHHHHh--ccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 185 IEYWPDPQRGIREAYR--VLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
...-.+.+++++.+.+ .+.|+|.+++--+..... ..+.+.+-|++.|.....++-
T Consensus 169 Ye~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~--------------~~~~~~~~l~~~~~~~l~~el 225 (283)
T 2oo3_A 169 YERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKA--------------WTEQFLRKMREISSKSVRIEL 225 (283)
T ss_dssp CCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHH--------------HHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchH--------------HHHHHHHHHHhcCCCeEEEEE
Confidence 5433455667766665 456899998876554332 124555666666765555544
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.018 Score=50.28 Aligned_cols=147 Identities=12% Similarity=0.091 Sum_probs=96.8
Q ss_pred CCCEEEEEcCccchhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhC--------------------------CCCCceEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKE--------------------------PLKECKIV 162 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~--------------------------~~~~v~~~ 162 (290)
+...|+-+|||.=.....+... .++..++=+|. |+.++.=++.. ...+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4578999999987776666553 24678888888 66555322211 13456788
Q ss_pred EcCCCCC----------CCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh--
Q 022929 163 EGDAEDL----------PFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW-- 228 (290)
Q Consensus 163 ~~d~~~l----------~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~-- 228 (290)
..|+.+. .+..+..-++++-.++.|++.. .++++.+..... +|.+++.++..+.....+.+....
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~fg~~M~~~l~~ 247 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDRFGQIMIENLRR 247 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCHHHHHHHHHHHH
Confidence 8898663 1333446688899999999754 468888887765 555555565544333332222111
Q ss_pred --------hcCCCHHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 229 --------MLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 229 --------~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
..|++.++..+.|.++||+.+++.++..-|
T Consensus 248 ~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~~ 285 (334)
T 3iei_A 248 RQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELY 285 (334)
T ss_dssp TTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEHHHHH
T ss_pred hCCCCcccccCCCHHHHHHHHHHcCCCcceeecHHHHH
Confidence 134688999999999999998888776544
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0051 Score=53.21 Aligned_cols=140 Identities=14% Similarity=0.221 Sum_probs=93.3
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC------CCCceEEEcCCCCCC---------CCCCCc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLP---------FPTDYA 176 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~l~---------~~~~~~ 176 (290)
..|+++|||-=.....+.. .++.+++-+|. |++++..++... ..+..++..|+.+ . +.....
T Consensus 104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW-PTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR 180 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC-CTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred CeEEEeCCCCCchhhhccC-CCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence 5799999997655444431 12478999995 998888776642 3457788899876 3 222335
Q ss_pred cEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCc-hh---Hh----hhhHHH----------hhcCCC-HH
Q 022929 177 DRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPT-FW---LS----RYFADV----------WMLFPK-EE 235 (290)
Q Consensus 177 D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~-~~---~~----~~~~~~----------~~~~~~-~~ 235 (290)
-++++..+++|++.. ..+++.+...+.||+.+++....... .. .. ..+... ...+.+ .+
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 260 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRA 260 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCC
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChH
Confidence 578889999999764 46899999988999998887544321 11 01 111111 111235 78
Q ss_pred HHHHHHHHCCCcEEEEEEcC
Q 022929 236 EYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 236 ~~~~ll~~aGf~~v~~~~~~ 255 (290)
++.+.|.+.||+.+ .....
T Consensus 261 ~~~~~f~~~G~~~~-~~~~~ 279 (310)
T 2uyo_A 261 VVADWLNRHGWRAT-AQSAP 279 (310)
T ss_dssp CHHHHHTTTTEEEE-EEEHH
T ss_pred HHHHHHHHCcCccc-cCCHH
Confidence 99999999999988 55543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0023 Score=54.31 Aligned_cols=114 Identities=13% Similarity=0.002 Sum_probs=71.1
Q ss_pred CCCEEEEEcC------ccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGG------GTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~------G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
.+.+|||+|+ -+|.. .+++..|. ..++++|+.+-.. ..+ .++++|...+.. .++||+|+|.
T Consensus 109 ~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s--------da~-~~IqGD~~~~~~-~~k~DLVISD 176 (344)
T 3r24_A 109 YNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS--------DAD-STLIGDCATVHT-ANKWDLIISD 176 (344)
T ss_dssp TTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC--------SSS-EEEESCGGGEEE-SSCEEEEEEC
T ss_pred CCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc--------CCC-eEEEcccccccc-CCCCCEEEec
Confidence 6899999997 45653 33444554 5999999954321 112 458999765433 4679999994
Q ss_pred Cccc---c--cCC------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 183 GSIE---Y--WPD------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 183 ~~l~---~--~~~------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
..-. + .+. -+..+.-+.+.|+|||.+++-.+-... .+.+.++. + -|+.+++
T Consensus 177 MAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg----------------~~~L~~lr-k-~F~~VK~ 238 (344)
T 3r24_A 177 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW----------------NADLYKLM-G-HFSWWTA 238 (344)
T ss_dssp CCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC----------------CHHHHHHH-T-TEEEEEE
T ss_pred CCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC----------------HHHHHHHH-h-hCCeEEE
Confidence 3321 1 111 235667788999999999986443321 13344444 3 7887777
Q ss_pred EE
Q 022929 252 KR 253 (290)
Q Consensus 252 ~~ 253 (290)
..
T Consensus 239 fK 240 (344)
T 3r24_A 239 FV 240 (344)
T ss_dssp EE
T ss_pred EC
Confidence 64
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.026 Score=50.11 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=80.4
Q ss_pred CEEEEEcCccchhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC--------CCCCccEEEec
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF--------PTDYADRYVSA 182 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~--------~~~~~D~i~~~ 182 (290)
.+++|+-||.|.++..+... +. .+.++|+++.+.+..+.|.. +..++++|+.++.. ....+|+|+..
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~--~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFP--RSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG 78 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCT--TSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCC--CCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence 57999999999999999887 44 46799999999999998864 56788889877631 23469999874
Q ss_pred Cccccc--------CCHH-HHHH---HHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 183 GSIEYW--------PDPQ-RGIR---EAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 183 ~~l~~~--------~~~~-~~l~---~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
---..+ .++. .++. ++...++|.- ++.+....-..... .. ..+.+. .|++.||.+..
T Consensus 79 pPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~--~v~ENV~gl~s~~~--~~------~~~~i~-~l~~~GY~v~~ 147 (376)
T 3g7u_A 79 PPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLF--FLAENVPGIMQEKY--SG------IRNKAF-NLVSGDYDILD 147 (376)
T ss_dssp CCCCTTC-------CHHHHHHHHHHHHHHHHHCCSE--EEEEECTTTTCGGG--HH------HHHHHH-HHHHTTEEECC
T ss_pred CCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCE--EEEecchHhhccCc--HH------HHHHHH-HHHcCCCccCc
Confidence 322211 1222 2333 3444556743 33333322111000 00 235667 88999997634
Q ss_pred EEEcCc
Q 022929 251 LKRIGP 256 (290)
Q Consensus 251 ~~~~~~ 256 (290)
...+..
T Consensus 148 ~~vl~a 153 (376)
T 3g7u_A 148 PIKVKA 153 (376)
T ss_dssp CEEEEG
T ss_pred EEEEEH
Confidence 444443
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.019 Score=50.33 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=79.3
Q ss_pred CEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC---CCCCccEEEecCcccc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSAGSIEY 187 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~---~~~~~D~i~~~~~l~~ 187 (290)
.+|+|+.||.|.++..+...-- ...++++|+++.+++..+.|.. +..++.+|+.++.. +...+|+++...--..
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~--~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~ 80 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP--HTQLLAKTIEGITLEEFDRLSFDMILMSPPCQP 80 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--TSCEECSCGGGCCHHHHHHHCCSEEEECCC---
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc--ccccccCCHHHccHhHcCcCCcCEEEEcCCCcc
Confidence 5799999999999999988710 1368999999999999999975 44577888877541 1114899987432111
Q ss_pred c---------CCHH-HHHHH---HHhccC--CCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 188 W---------PDPQ-RGIRE---AYRVLK--LGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 188 ~---------~~~~-~~l~~---~~~~L~--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
+ .+.. .++.+ +...++ |. +++.+....-.. . .+.+.+.+.|++.||.+. ..
T Consensus 81 fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l~~-~----------~~~~~i~~~l~~~GY~v~-~~ 146 (343)
T 1g55_A 81 FTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEV-S----------STRDLLIQTIENCGFQYQ-EF 146 (343)
T ss_dssp ---------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGG-S----------HHHHHHHHHHHHTTEEEE-EE
T ss_pred hhhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCccccC-H----------HHHHHHHHHHHHCCCeeE-EE
Confidence 1 1222 23343 334444 54 333333222110 0 034678889999999754 44
Q ss_pred EcCccc
Q 022929 253 RIGPKW 258 (290)
Q Consensus 253 ~~~~~~ 258 (290)
.+....
T Consensus 147 vl~a~~ 152 (343)
T 1g55_A 147 LLSPTS 152 (343)
T ss_dssp EECGGG
T ss_pred EEEHHH
Confidence 455443
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.045 Score=47.63 Aligned_cols=150 Identities=12% Similarity=0.046 Sum_probs=89.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-CCCeE-EEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNV-TILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v-~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~~ 184 (290)
...+++|+-||.|.+...+...- +...+ .++|+++.+.+..+.|.... ++..|+.++. ++...+|+++...-
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~---~~~~DI~~~~~~~i~~~~~Dil~ggpP 85 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE---VQVKNLDSISIKQIESLNCNTWFMSPP 85 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC---CBCCCTTTCCHHHHHHTCCCEEEECCC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC---cccCChhhcCHHHhccCCCCEEEecCC
Confidence 45689999999999999988761 11346 69999999999998886532 5678887764 22225899986422
Q ss_pred ccc-----------cCCHH-HHHHHHHh-ccCC---CCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 185 IEY-----------WPDPQ-RGIREAYR-VLKL---GGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 185 l~~-----------~~~~~-~~l~~~~~-~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
-.. ..+.. .++.++.+ +++. .-.+++.+....-.. . .+.+.+.+.|++.||.+
T Consensus 86 CQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~-~----------~~~~~i~~~l~~~GY~v 154 (327)
T 3qv2_A 86 CQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKE-S----------LVFKEIYNILIKNQYYI 154 (327)
T ss_dssp CTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG-S----------HHHHHHHHHHHHTTCEE
T ss_pred ccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcC-h----------HHHHHHHHHHHhCCCEE
Confidence 221 12333 45566666 5532 134445544332110 0 13467888999999974
Q ss_pred EEEEEcCcccccccccccceeeeEEEEec
Q 022929 249 VQLKRIGPKWYRGVRRHGLIMGCSVTGVK 277 (290)
Q Consensus 249 v~~~~~~~~~~~~~~~~~~~~~~~~~a~k 277 (290)
....+....+ ++.+...-+ .++|.+
T Consensus 155 -~~~vl~a~~y-GvPQ~R~R~--fivg~r 179 (327)
T 3qv2_A 155 -KDIICSPIDI-GIPNSRTRY--YVMARL 179 (327)
T ss_dssp -EEEEECGGGG-TCSBCCCEE--EEEEES
T ss_pred -EEEEEeHHHc-CCCccceEE--EEEEEe
Confidence 4445554433 333333322 445543
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.08 Score=46.13 Aligned_cols=147 Identities=15% Similarity=0.115 Sum_probs=87.0
Q ss_pred CEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecCccc-
Q 022929 112 MLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGSIE- 186 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~~l~- 186 (290)
.+++|+-||.|.+...+...- +...+.++|+++.+.+.-+.|.. ...++..|+.++. ++...+|+++...--.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~--~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~ 81 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP--ETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQP 81 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--TSCEECCCGGGCCHHHHHHTTCCEEEECCCCCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC--CCceeccccccCCHHHhccCCCCEEEecCCCcc
Confidence 479999999999999998771 11457899999999999998875 3456778887654 2222589998632111
Q ss_pred --------ccCCHH-HHHHHHHhc---cC-CCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 187 --------YWPDPQ-RGIREAYRV---LK-LGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 187 --------~~~~~~-~~l~~~~~~---L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
...+.. .++.++.++ ++ | .+++.+....-.. .. ..+.+.+.|++.||.+. ...
T Consensus 82 fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~-~~----------~~~~i~~~l~~~GY~v~-~~v 147 (333)
T 4h0n_A 82 FTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFEN-ST----------VRNLFIDKLKECNFIYQ-EFL 147 (333)
T ss_dssp SEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGG-SH----------HHHHHHHHHHHTTEEEE-EEE
T ss_pred hhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhh-hh----------HHHHHHHHHHhCCCeEE-EEE
Confidence 112222 233333333 44 4 4445544433211 00 24678899999999754 444
Q ss_pred cCcccccccccccceeeeEEEEec
Q 022929 254 IGPKWYRGVRRHGLIMGCSVTGVK 277 (290)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~a~k 277 (290)
+....+ ++.+...-+ .++|.+
T Consensus 148 l~a~~~-GvPQ~R~R~--fiva~r 168 (333)
T 4h0n_A 148 LCPSTV-GVPNSRLRY--YCTARR 168 (333)
T ss_dssp ECTTTT-TCSCCCCEE--EEEEEE
T ss_pred ecHHHc-CCCccceEE--EEEEEe
Confidence 554333 233333322 455544
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.05 E-value=0.23 Score=43.04 Aligned_cols=132 Identities=13% Similarity=-0.004 Sum_probs=77.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecCcccc-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY- 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~- 187 (290)
.+.+++|+.||.|.++..+... +...+.++|+++.+++..+.+..... .+|+.++... -..+|+|+...--..
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~~----~~Di~~~~~~~~~~~D~l~~gpPCQ~f 84 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEKP----EGDITQVNEKTIPDHDILCAGFPCQAF 84 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCCC----BSCGGGSCGGGSCCCSEEEEECCCTTT
T ss_pred CCCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCCC----cCCHHHcCHhhCCCCCEEEECCCCCCc
Confidence 3578999999999999999877 23457889999999999998864321 5777654311 124899987321111
Q ss_pred --------cCCHH-HHH---HHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 188 --------WPDPQ-RGI---REAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 188 --------~~~~~-~~l---~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
..++. .++ -++.+.++|. +++.+....-..... . ...+.+.+.|++.||.+. ...+.
T Consensus 85 S~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl~~~~~--~------~~~~~i~~~l~~~GY~v~-~~vl~ 153 (327)
T 2c7p_A 85 SISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASHDN--G------NTLEVVKNTMNELDYSFH-AKVLN 153 (327)
T ss_dssp CTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTGGG--G------HHHHHHHHHHHHTTBCCE-EEEEE
T ss_pred chhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHHHhccc--c------HHHHHHHHHHHhCCCEEE-EEEEE
Confidence 11222 122 2334445774 333333322110000 0 024678889999999754 44444
Q ss_pred cc
Q 022929 256 PK 257 (290)
Q Consensus 256 ~~ 257 (290)
..
T Consensus 154 a~ 155 (327)
T 2c7p_A 154 AL 155 (327)
T ss_dssp GG
T ss_pred HH
Confidence 43
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.02 Score=55.05 Aligned_cols=127 Identities=20% Similarity=0.277 Sum_probs=82.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-------C-----CCeEEEEeC---CHHHHHHHhhhC--------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-------D-----AKNVTILDQ---SPHQLAKAKQKE-------------------- 154 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-------~-----~~~v~~vD~---s~~~~~~a~~~~-------------------- 154 (290)
+.-+|+|+|.|+|.....+.+.+ | ..+++.+|. +.+.+..+....
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45799999999999777665532 1 167999998 666665543211
Q ss_pred ------CCC--CceEEEcCCCC-CC-CC---CCCccEEEecCcccccCCH----HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 155 ------PLK--ECKIVEGDAED-LP-FP---TDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 155 ------~~~--~v~~~~~d~~~-l~-~~---~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
... .++++.+|+.+ ++ +. ...+|+++....-- -.++ ..++..+.++++|||.+..-.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p-~~np~~w~~~~~~~l~~~~~~g~~~~t~~----- 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAP-AKNPDMWNEQLFNAMARMTRPGGTFSTFT----- 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEESC-----
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCC-CCChhhhhHHHHHHHHHHhCCCCEEEecc-----
Confidence 011 25567777732 22 21 35799999744211 1122 579999999999999875321
Q ss_pred hhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 218 FWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
....++..|.++||.+......+..
T Consensus 212 ---------------~~~~vr~~l~~aGf~~~~~~~~~~k 236 (689)
T 3pvc_A 212 ---------------AAGFVRRGLQQAGFNVTKVKGFGQK 236 (689)
T ss_dssp ---------------CCHHHHHHHHHTTCEEEEEECSSSS
T ss_pred ---------------CcHHHHHHHHhCCeEEEeccCCCcc
Confidence 2357888999999998887765543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.021 Score=51.08 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-C------CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-P------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-~------~~~~~~D~i~ 180 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++.. .+.+..+-.+. . .....+|+|+
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG----a~~i~~~~~~~~~~~~~~~~~g~g~Dvvi 259 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG----FETIDLRNSAPLRDQIDQILGKPEVDCGV 259 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT----CEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC----CcEEcCCCcchHHHHHHHHhCCCCCCEEE
Confidence 4889999999986 888888888763339999999999999988542 23332221111 0 1122599998
Q ss_pred ecCccccc--------CCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 181 SAGSIEYW--------PDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 181 ~~~~l~~~--------~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
-...-... ..+...++.+.++|+++|.+++....
T Consensus 260 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 260 DAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp ECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred ECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 65433210 01234688899999999999876543
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.017 Score=55.31 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=81.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-------C-----CCeEEEEeC---CHHHHHHHhhhC--------------CC----
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-------D-----AKNVTILDQ---SPHQLAKAKQKE--------------PL---- 156 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-------~-----~~~v~~vD~---s~~~~~~a~~~~--------------~~---- 156 (290)
+.-+|+|+|-|+|.......+.. | ..+++++|. +.+.+..+.... ..
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 44689999999998776654432 1 257999998 887777544321 10
Q ss_pred ----------CCceEEEcCCCC-CC-CC---CCCccEEEecCcccccCCH----HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 157 ----------KECKIVEGDAED-LP-FP---TDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 157 ----------~~v~~~~~d~~~-l~-~~---~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
-.+++..+|+.+ ++ +. ...||+++... +..-.++ ..+++.+.++++|||.+....
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~----- 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLATFT----- 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC-----
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCCcCChhhhhHHHHHHHHHHhCCCCEEEecc-----
Confidence 113355666632 22 11 35699998743 2222233 479999999999999875422
Q ss_pred hhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 218 FWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
....++..|.++||.+......+.
T Consensus 220 ---------------~~~~vr~~L~~aGf~v~~~~~~g~ 243 (676)
T 3ps9_A 220 ---------------SAGFVRRGLQDAGFTMQKRKGFGR 243 (676)
T ss_dssp ---------------CCHHHHHHHHHHTCEEEEEECSTT
T ss_pred ---------------CcHHHHHHHHhCCeEEEecccccc
Confidence 235678889999999887765553
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.055 Score=48.21 Aligned_cols=101 Identities=24% Similarity=0.268 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-CC------CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LP------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l~------~~~~~~D~i~ 180 (290)
+++++||-+|+|. |.++..+++..+..+|+++|.+++-++.+++... +.+..+-.+ +. .....+|+|+
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF----EIADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----EEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCC----cEEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 4789999999986 8888999988744489999999999999976432 323221111 00 1123599998
Q ss_pred ecCccc---------ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIE---------YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~---------~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-.-... +.+++...++...++|+++|.+++...
T Consensus 260 d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred ECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence 654321 223445678899999999999987653
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.033 Score=49.21 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++... . ..+..+-.++ ....+.+|+|+-.
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~~~~~gg~D~vid~ 265 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-T--HVINSKTQDPVAAIKEITDGGVNFALES 265 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-S--EEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-C--EEecCCccCHHHHHHHhcCCCCcEEEEC
Confidence 4789999999986 8888888887643479999999999999886532 1 1222211111 0112259999854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... ...++...+.|+++|.+++...
T Consensus 266 ~g~------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 266 TGS------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp SCC------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCC------HHHHHHHHHHHhcCCEEEEeCC
Confidence 321 3567889999999999988654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.019 Score=49.88 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=49.3
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
+....+...++.... .+++.|||.-||+|..+....+. +.+++|+|+++...+.++++..
T Consensus 236 ~kp~~l~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~ 295 (323)
T 1boo_A 236 RFPAKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFL 295 (323)
T ss_dssp CCCTHHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 344566666665543 47899999999999999988887 7899999999999999998865
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.067 Score=46.96 Aligned_cols=98 Identities=21% Similarity=0.176 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCC--CC------CCCCCCccEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE--DL------PFPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~--~l------~~~~~~~D~i 179 (290)
+++++||-+|+|. |..+..+++..+...|+++|.+++-++.+++. ...-+.+...+.. ++ ......+|+|
T Consensus 178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvv 256 (363)
T 3m6i_A 178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVA 256 (363)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEE
Confidence 3789999999986 88888999887433499999999999999887 3222222211110 00 0123469999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+-... ....++.+.++|+++|.+++...
T Consensus 257 id~~g------~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 257 LECTG------VESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp EECSC------CHHHHHHHHHHSCTTCEEEECCC
T ss_pred EECCC------ChHHHHHHHHHhcCCCEEEEEcc
Confidence 85432 13467888999999999998754
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.014 Score=52.45 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=39.6
Q ss_pred CCCCEEEEEcCccchhHHHHH-hhCCC-CeEEEEeCCHHHHHHHhhhC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIV-KHVDA-KNVTILDQSPHQLAKAKQKE 154 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~-~~~~~-~~v~~vD~s~~~~~~a~~~~ 154 (290)
.++..|+|||++.|..+..++ +..+. .+|+++|+++...+..+++.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~ 272 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVL 272 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 478999999999999999888 55443 79999999999999888764
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.1 Score=46.09 Aligned_cols=97 Identities=20% Similarity=0.317 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC--------CCCCCCccEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--------PFPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l--------~~~~~~~D~i 179 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++..+.+++.... ..+..+-.++ ....+.+|+|
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~i~~~~~~~~gg~Dvv 257 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT---ATVDPSAGDVVEAIAGPVGLVPGGVDVV 257 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS---EEECTTSSCHHHHHHSTTSSSTTCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC---EEECCCCcCHHHHHHhhhhccCCCCCEE
Confidence 3789999999986 88888888887444999999999999988875321 1121111110 0223369999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+-... ....++.+.++|+++|.+++....
T Consensus 258 id~~G------~~~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 258 IECAG------VAETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp EECSC------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEEecc
Confidence 85432 135678899999999999887543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.031 Score=48.46 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=50.0
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCH---HHHHHHhhhCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP---HQLAKAKQKEP 155 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~---~~~~~a~~~~~ 155 (290)
+....+...++.... .+++.|||.-||+|..+..+.+. +.+++|+|+++ ...+.++++..
T Consensus 226 ~kp~~l~~~~i~~~~--~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 226 QKPAAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp CCCHHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHhC--CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHH
Confidence 445667777776543 47899999999999999999888 78999999999 99999998865
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0078 Score=52.57 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=66.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--C--CCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--F--PTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--~--~~~~~D~i~~~~ 183 (290)
+++++||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++... . ..+..+-.++. . ..+.+|+++-..
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~~i~~~~~~~~~~~~~~~g~~d~vid~~ 240 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGA-E--VAVNARDTDPAAWLQKEIGGAHGVLVTA 240 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCC-C--EEEeCCCcCHHHHHHHhCCCCCEEEEeC
Confidence 4889999999986 88999999887 6799999999999999886532 1 12221111110 0 012588887543
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
. ....++.+.+.|+++|.+++....
T Consensus 241 g------~~~~~~~~~~~l~~~G~iv~~G~~ 265 (340)
T 3s2e_A 241 V------SPKAFSQAIGMVRRGGTIALNGLP 265 (340)
T ss_dssp C------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred C------CHHHHHHHHHHhccCCEEEEeCCC
Confidence 2 235778899999999999887543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.12 Score=41.05 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=61.5
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~ 178 (290)
+++++||.+|+ |.|..+..++... +.+|+++|.+++..+.+++.. .... .|..+.. .....+|+
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g----~~~~-~d~~~~~~~~~~~~~~~~~~~D~ 110 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLG----VEYV-GDSRSVDFADEILELTDGYGVDV 110 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTC----CSEE-EETTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcC----CCEE-eeCCcHHHHHHHHHHhCCCCCeE
Confidence 37899999994 4566666666654 679999999998887776532 1111 1332211 12235999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++.+.. ...++.+.+.|+++|.++....
T Consensus 111 vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 111 VLNSLA-------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred EEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence 986532 1467888999999999988643
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.082 Score=46.34 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC---CC----C-CCCCCCccEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA---ED----L-PFPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~---~~----l-~~~~~~~D~i 179 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++... . ..+..+- .+ + ......+|+|
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~~i~~~~~~g~D~v 246 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA-D--LVLQISKESPQEIARKVEGQLGCKPEVT 246 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-S--EEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-C--EEEcCcccccchHHHHHHHHhCCCCCEE
Confidence 3789999999986 8888888888643389999999999998886432 1 2222210 00 0 0001359999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+-... ....++...++|+++|.+++...
T Consensus 247 id~~g------~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 247 IECTG------AEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp EECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EECCC------ChHHHHHHHHHhcCCCEEEEEec
Confidence 85432 12467888899999999988754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.19 Score=43.92 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-CCCC------CC---CCCcc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLP------FP---TDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~~l~------~~---~~~~D 177 (290)
+++++||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++... . ..+..+- .++. .. ...+|
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~~~~~~~~~~~~~~i~~~~~~~~g~g~D 242 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA-D--VTLVVDPAKEEESSIIERIRSAIGDLPN 242 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC-S--EEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCC-C--EEEcCcccccHHHHHHHHhccccCCCCC
Confidence 3789999999985 78888888876 5679999999999998886432 1 2222110 1110 11 23599
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+|+-.... ...++...+.|+++|.+++...
T Consensus 243 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 243 VTIDCSGN------EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EEEECSCC------HHHHHHHHHHSCTTCEEEECSC
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 99854321 2467888899999999988754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.12 Score=45.52 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=64.9
Q ss_pred CCCEEEEEc-Ccc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 110 RNMLVVDVG-GGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
++.+||-+| +|. |..+..+++...+.+|+++|.+++-++.+++... . .++..+ .++ ....+.+|+|+-.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa-d--~vi~~~-~~~~~~v~~~~~~g~Dvvid~ 246 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA-H--HVIDHS-KPLAAEVAALGLGAPAFVFST 246 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC-S--EEECTT-SCHHHHHHTTCSCCEEEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC-C--EEEeCC-CCHHHHHHHhcCCCceEEEEC
Confidence 678999998 664 8888999887557899999999999998876432 1 111111 110 1233469998853
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. ....++.+.++|+++|.+++..
T Consensus 247 ~g------~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 247 TH------TDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp SC------HHHHHHHHHHHSCTTCEEEECS
T ss_pred CC------chhhHHHHHHHhcCCCEEEEEC
Confidence 22 2357788999999999998874
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.026 Score=49.38 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+++++||-+|+|. |..+..+++.. +.+|+++|.+++-.+.+++... . ..+ .+... +.. .+|+|+-...-.
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~v~-~~~~~--~~~-~~D~vid~~g~~- 245 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGV-K--HFY-TDPKQ--CKE-ELDFIISTIPTH- 245 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTC-S--EEE-SSGGG--CCS-CEEEEEECCCSC-
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCC-C--eec-CCHHH--Hhc-CCCEEEECCCcH-
Confidence 4889999999986 88888888886 5799999999998888886432 2 122 33222 222 599998543221
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
..++...+.|+++|.+++.....
T Consensus 246 -----~~~~~~~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 246 -----YDLKDYLKLLTYNGDLALVGLPP 268 (348)
T ss_dssp -----CCHHHHHTTEEEEEEEEECCCCC
T ss_pred -----HHHHHHHHHHhcCCEEEEECCCC
Confidence 24678889999999999875443
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.24 Score=44.11 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~~ 181 (290)
+++.+||-+|+|. |..+..+++..+..+|+++|.+++-++.+++... . ..+..+-.++. .....+|+|+-
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~i~~~t~g~g~D~vid 288 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA-D--HVIDPTKENFVEAVLDYTNGLGAKLFLE 288 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC-S--EEECTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-C--EEEcCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 4889999999985 8888888888743499999999999999987632 1 12211111110 12335999985
Q ss_pred cCcccccCCHHHHHHHHHhcc----CCCCEEEEEccC
Q 022929 182 AGSIEYWPDPQRGIREAYRVL----KLGGKACIIGPV 214 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L----~pgG~l~i~~~~ 214 (290)
.- ......+..+.+.| +++|.+++....
T Consensus 289 ~~-----g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 289 AT-----GVPQLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp CS-----SCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred CC-----CCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 32 23333445555555 999999987644
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.077 Score=46.40 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=66.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~~ 181 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++.... .++..+-.++. .....+|+|+-
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~v~~~t~g~g~D~v~d 241 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT---DIINYKNGDIVEQILKATDGKGVDKVVI 241 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC---EEECGGGSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc---eEEcCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 4789999999986 88888888886434899999999999988876431 12211111110 12335999985
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
...- ...++.+.+.|+++|.++.....
T Consensus 242 ~~g~------~~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 242 AGGD------VHTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp CSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred CCCC------hHHHHHHHHHHhcCCEEEEeccc
Confidence 4322 13678889999999999887543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.13 Score=45.24 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~~ 181 (290)
+++++||-+|+|. |..+..+++.. +.+|+++|.+++-++.+++... . ..+..+-.++. .....+|+|+-
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~v~~~~~g~g~D~vid 263 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALGA-D--HGINRLEEDWVERVYALTGDRGADHILE 263 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTC-S--EEEETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcCC-C--EEEcCCcccHHHHHHHHhCCCCceEEEE
Confidence 4889999999886 88888888886 6799999999999998887532 1 22221111110 12336999986
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
...- ..++.+.+.|+++|.+++....
T Consensus 264 ~~g~-------~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 264 IAGG-------AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp ETTS-------SCHHHHHHHEEEEEEEEEECCC
T ss_pred CCCh-------HHHHHHHHHhhcCCEEEEEecC
Confidence 5431 2467788899999999987543
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.068 Score=46.57 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~~ 181 (290)
+++.+||-+|+|. |..+..+++..++.+|+++|.+++-++.+++... . ..+..+- ++. .....+|+|+-
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa-~--~~i~~~~-~~~~~v~~~t~g~g~d~v~d 245 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA-D--AAVKSGA-GAADAIRELTGGQGATAVFD 245 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC-S--EEEECST-THHHHHHHHHGGGCEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-C--EEEcCCC-cHHHHHHHHhCCCCCeEEEE
Confidence 4889999999986 8888888888767899999999999999986532 1 1222211 110 11225999885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.-. ....++.+.+.|+++|.+++....
T Consensus 246 ~~G------~~~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 246 FVG------AQSTIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp SSC------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred CCC------CHHHHHHHHHHHhcCCEEEEECCC
Confidence 432 134788899999999999887543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.39 Score=46.07 Aligned_cols=146 Identities=15% Similarity=0.198 Sum_probs=91.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC--------CCeEEEEeCCHHHHHHHhhhCC--------------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEP-------------------------- 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~--------~~~v~~vD~s~~~~~~a~~~~~-------------------------- 155 (290)
+...|+-+|||.=.....+....+ +..++=+|. ++.++.=++...
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 457899999998777777765533 456777777 554433222110
Q ss_pred -CCCceEEEcCCCCCC----------C-CCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCC---ch
Q 022929 156 -LKECKIVEGDAEDLP----------F-PTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP---TF 218 (290)
Q Consensus 156 -~~~v~~~~~d~~~l~----------~-~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~---~~ 218 (290)
..+..++..|+.+.. + .....-++++-.++.|++.. .++++.+.+. ++|.+++.+...+ ..
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTS
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCC
Confidence 025678888997631 2 33345578888999999754 4688888754 5777666554433 11
Q ss_pred hHhhhhH-HH---------hhcCCCHHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 219 WLSRYFA-DV---------WMLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 219 ~~~~~~~-~~---------~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
...+.+. .. ...+++.++..+.|.++||+.+...++...|
T Consensus 264 ~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~~~~y 313 (695)
T 2zwa_A 264 PFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMFQLW 313 (695)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeHHHHH
Confidence 1111111 11 1135689999999999999988877765433
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.02 Score=50.70 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC----CCCCCCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD----AEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d----~~~l~~~~~~~D~i~~~~ 183 (290)
+++++||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++... . .++..+ ...+ . +.+|+|+-..
T Consensus 193 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~--~-~g~Dvvid~~ 265 (369)
T 1uuf_A 193 GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGA-D--EVVNSRNADEMAAH--L-KSFDFILNTV 265 (369)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTC-S--EEEETTCHHHHHTT--T-TCEEEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC-c--EEeccccHHHHHHh--h-cCCCEEEECC
Confidence 4789999999985 88888888876 6789999999998888886432 1 122111 1111 1 3599998643
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.-. ..++...+.|+++|.++....
T Consensus 266 g~~------~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 266 AAP------HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp SSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred CCH------HHHHHHHHHhccCCEEEEecc
Confidence 321 235678899999999987654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.11 Score=43.44 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=80.2
Q ss_pred CCEEEEEcCccchhHHHHHhh-------CCCCeEEEEe-----CCH----------------------HHHHHH---hhh
Q 022929 111 NMLVVDVGGGTGFTTLGIVKH-------VDAKNVTILD-----QSP----------------------HQLAKA---KQK 153 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~-------~~~~~v~~vD-----~s~----------------------~~~~~a---~~~ 153 (290)
+..|+|+|+-.|..+..++.. .+..+++++| +.+ +.+... .++
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 468999999999988776542 2458999999 321 112211 111
Q ss_pred ---CC--CCCceEEEcCCCC-CC-----CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh
Q 022929 154 ---EP--LKECKIVEGDAED-LP-----FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (290)
Q Consensus 154 ---~~--~~~v~~~~~d~~~-l~-----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 222 (290)
.. ..+++++.+++.+ +| .+..++|+++.-.-. -......++.+...|+|||.+++-+...+.+. .
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~-G- 225 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELDNPKWP-G- 225 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTTCTTCT-H-
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCCCCCCh-H-
Confidence 22 2679999999843 22 234569999976532 12234578899999999999988775433221 0
Q ss_pred hhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 223 YFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
..+.|.+.+++.|.++.
T Consensus 226 ----------~~~A~~ef~~~~~~~i~ 242 (257)
T 3tos_A 226 ----------ENIAMRKVLGLDHAPLR 242 (257)
T ss_dssp ----------HHHHHHHHTCTTSSCCE
T ss_pred ----------HHHHHHHHHhhCCCeEE
Confidence 13567778787777644
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.065 Score=46.68 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~ 181 (290)
+++++||=+|+|. |..+..+++...+.+|+++|.+++-++.+++.... ..+...-.+. -.....+|.++.
T Consensus 162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~---~~i~~~~~~~~~~v~~~t~g~g~d~~~~ 238 (348)
T 4eez_A 162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD---VTINSGDVNPVDEIKKITGGLGVQSAIV 238 (348)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS---EEEEC-CCCHHHHHHHHTTSSCEEEEEE
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe---EEEeCCCCCHHHHhhhhcCCCCceEEEE
Confidence 4889999999986 55666667766689999999999988888865431 1221111110 012234676664
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
... ....+....+.|+++|.+++....
T Consensus 239 ~~~------~~~~~~~~~~~l~~~G~~v~~g~~ 265 (348)
T 4eez_A 239 CAV------ARIAFEQAVASLKPMGKMVAVAVP 265 (348)
T ss_dssp CCS------CHHHHHHHHHTEEEEEEEEECCCC
T ss_pred ecc------CcchhheeheeecCCceEEEEecc
Confidence 332 235678889999999999887543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.061 Score=46.83 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=66.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~~ 181 (290)
.++++||=+|+|. |.++..+++..+...++++|.+++-++.+++.... ..+..+-.+.+ .....+|+|+-
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~---~~i~~~~~~~~~~~~~~~~~~g~d~v~d 235 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM---QTFNSSEMSAPQMQSVLRELRFNQLILE 235 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHHGGGCSSEEEEE
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe---EEEeCCCCCHHHHHHhhcccCCcccccc
Confidence 3789999999985 77788888887666789999999999999875321 22222111110 11234788775
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
... ....++...++|+++|.+++.....
T Consensus 236 ~~G------~~~~~~~~~~~l~~~G~~v~~g~~~ 263 (346)
T 4a2c_A 236 TAG------VPQTVELAVEIAGPHAQLALVGTLH 263 (346)
T ss_dssp CSC------SHHHHHHHHHHCCTTCEEEECCCCS
T ss_pred ccc------ccchhhhhhheecCCeEEEEEeccC
Confidence 432 2356788899999999998876543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.064 Score=46.09 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+++++||-+|+|. |..+..+++.. +.+|++++ +++-.+.+++... +.+..|...+ .+.+|+|+-.-.-
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~lGa----~~v~~d~~~v---~~g~Dvv~d~~g~-- 209 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKRGV----RHLYREPSQV---TQKYFAIFDAVNS-- 209 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHHTE----EEEESSGGGC---CSCEEEEECC-----
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHcCC----CEEEcCHHHh---CCCccEEEECCCc--
Confidence 4889999999974 88888888886 56999999 8888888876532 2222242222 4569999853221
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
..+....++|+++|.++...
T Consensus 210 -----~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 210 -----QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ---------TTGGGEEEEEEEEEEC
T ss_pred -----hhHHHHHHHhcCCCEEEEEe
Confidence 12356789999999998874
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.22 Score=43.18 Aligned_cols=94 Identities=19% Similarity=0.228 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCC------CCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT------DYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~------~~~D~i~~ 181 (290)
+++++||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++... +.. .|..+..+.+ +.+|+|+.
T Consensus 163 ~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa----~~~-~d~~~~~~~~~~~~~~~~~d~vid 236 (339)
T 1rjw_A 163 KPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGA----DLV-VNPLKEDAAKFMKEKVGGVHAAVV 236 (339)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTC----SEE-ECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCC----CEE-ecCCCccHHHHHHHHhCCCCEEEE
Confidence 4789999999974 77888888876 5799999999999988875321 111 2332211100 35899886
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.... ...++...+.|+++|.++.....
T Consensus 237 ~~g~------~~~~~~~~~~l~~~G~~v~~g~~ 263 (339)
T 1rjw_A 237 TAVS------KPAFQSAYNSIRRGGACVLVGLP 263 (339)
T ss_dssp SSCC------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred CCCC------HHHHHHHHHHhhcCCEEEEeccc
Confidence 4331 24678888999999999886543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=1.2 Score=38.31 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=80.2
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecCcc-----
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSI----- 185 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l----- 185 (290)
.+|||+-||.|.+..-+.+. +...+.++|+++.+.+.-+.|.. ..++.+|+.++... -..+|+++...--
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~~---~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ 76 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHS---AKLIKGDISKISSDEFPKCDGIIGGPPSQSWSE 76 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHCC---SEEEESCGGGCCGGGSCCCSEEECCCCGGGTEE
T ss_pred CeEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCC---CCcccCChhhCCHhhCCcccEEEecCCCCCcCC
Confidence 36999999999999988776 23456789999999999888874 35778898766411 1248998863211
Q ss_pred ----cccCCHH-HHHH---HHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 186 ----EYWPDPQ-RGIR---EAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 186 ----~~~~~~~-~~l~---~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
....|+. .++. ++.+.++|. +++.+....-.... .-...+.+.+.|++.||.+ +...+...
T Consensus 77 ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~~--------~~~~~~~i~~~l~~~GY~v-~~~vlna~ 145 (331)
T 3ubt_Y 77 GGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQR--------HNKAVQEFIQEFDNAGYDV-HIILLNAN 145 (331)
T ss_dssp TTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGCT--------TSHHHHHHHHHHHHHTEEE-EEEEEEGG
T ss_pred CCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeeccccccc--------ccchhhhhhhhhccCCcEE-EEEecccc
Confidence 1123333 3333 344556775 33444333211000 0012467788899999964 45555544
Q ss_pred c
Q 022929 258 W 258 (290)
Q Consensus 258 ~ 258 (290)
.
T Consensus 146 ~ 146 (331)
T 3ubt_Y 146 D 146 (331)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.27 Score=43.66 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=47.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-------CCCeEEEEeCCHHHHHHHhhhCCCC-CceEEEcCCCCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-------DAKNVTILDQSPHQLAKAKQKEPLK-ECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-------~~~~v~~vD~s~~~~~~a~~~~~~~-~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
..-.|+|+|+|+|.++..+++.. ...+|+.||+|+...+.-++++... ++.+. .++.++|. . .-+|++
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~-~~l~~lp~--~-~~~viA 155 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH-DSFEDVPE--G-PAVILA 155 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE-SSGGGSCC--S-SEEEEE
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEe-CChhhcCC--C-CeEEEe
Confidence 34579999999999988776532 2358999999998887666655322 34433 33344431 1 335555
Q ss_pred cCcccccC
Q 022929 182 AGSIEYWP 189 (290)
Q Consensus 182 ~~~l~~~~ 189 (290)
+.++..+|
T Consensus 156 NE~fDAlP 163 (387)
T 1zkd_A 156 NEYFDVLP 163 (387)
T ss_dssp ESSGGGSC
T ss_pred ccccccCc
Confidence 55554444
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.021 Score=49.96 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=64.5
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEE----cCC-CCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVE----GDA-EDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~----~d~-~~l~~~~~~~D~i~~~ 182 (290)
++++||-+|+|. |..+..+++.. |+.+|+++|.+++.++.+++... . .++. .|. ..+. ....+|+|+-.
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~-~g~g~D~vid~ 245 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGA-D--YVSEMKDAESLINKLT-DGLGASIAIDL 245 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTC-S--EEECHHHHHHHHHHHH-TTCCEEEEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCC-C--EEeccccchHHHHHhh-cCCCccEEEEC
Confidence 689999999975 77888888775 25789999999999998886532 1 1121 111 1111 12259999865
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... ...++.+.+.|+++|.++....
T Consensus 246 ~g~------~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 246 VGT------EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp SCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCC------hHHHHHHHHHhhcCCEEEEeCC
Confidence 332 3467888999999999988653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.31 Score=42.06 Aligned_cols=92 Identities=18% Similarity=0.046 Sum_probs=62.7
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-CC-------CCCCCccE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LP-------FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l~-------~~~~~~D~ 178 (290)
+++++||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. .. .. ..|..+ .. ...+.+|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~-g~---~~-~~d~~~~~~~~~~~~~~~~~~~d~ 217 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI-GF---DA-AFNYKTVNSLEEALKKASPDGYDC 217 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TC---SE-EEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc-CC---cE-EEecCCHHHHHHHHHHHhCCCCeE
Confidence 47899999998 4577777777765 67999999999888888543 21 11 123322 11 11246999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++.+... ..++...+.|+++|.+++...
T Consensus 218 vi~~~g~-------~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 218 YFDNVGG-------EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp EEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred EEECCCh-------HHHHHHHHHHhcCCEEEEEec
Confidence 9865432 357888899999999987653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.31 Score=42.06 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=64.4
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEE
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~ 180 (290)
+++++||-+|+ | .|..+..+++.. +.+|+++|.+++.++.+++... . ..+..+-.++. .....+|+++
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga-~--~~~~~~~~~~~~~~~~~~~~~g~D~vi 222 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGA-E--YLINASKEDILRQVLKFTNGKGVDASF 222 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC-c--EEEeCCCchHHHHHHHHhCCCCceEEE
Confidence 47899999994 4 578888888876 6799999999999888876431 1 12222111110 1234599998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.+..- ..++.+.+.|+++|.+++...
T Consensus 223 d~~g~-------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 223 DSVGK-------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp ECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred ECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence 65432 357788899999999988653
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.038 Score=48.95 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC--CCCC-----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD--AEDL-----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d--~~~l-----~~~~~~~D~i~ 180 (290)
+++.+||-+|+|. |..+..+++..+..+|+++|.+++-++.+++... . ..+... -.++ ....+.+|+|+
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~i~~~~~gg~D~vi 268 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV-N--EFVNPKDHDKPIQEVIVDLTDGGVDYSF 268 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC-C--EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c--EEEccccCchhHHHHHHHhcCCCCCEEE
Confidence 4789999999985 8888888888643489999999999998886432 1 122111 0111 01123699998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... ....++.+.+.|++| |.+++...
T Consensus 269 d~~g------~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 269 ECIG------NVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp ECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCC------CHHHHHHHHHHhhccCCEEEEEcc
Confidence 5432 134678899999997 99988754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.72 E-value=1.2 Score=33.05 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=57.9
Q ss_pred CCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCcc
Q 022929 111 NMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSI 185 (290)
Q Consensus 111 ~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~l 185 (290)
..+|+=+|||. |......+... +..|+++|.+++.++.+++ .++.++.+|..+.. ..-..+|++++..
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~----~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-- 79 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE----RGVRAVLGNAANEEIMQLAHLECAKWLILTI-- 79 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH----TTCEEEESCTTSHHHHHHTTGGGCSEEEECC--
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH----cCCCEEECCCCCHHHHHhcCcccCCEEEEEC--
Confidence 36799999985 54433333332 6899999999999888875 35678888886532 1223588888642
Q ss_pred cccCCHH--HHHHHHHhccCCCCEEEEE
Q 022929 186 EYWPDPQ--RGIREAYRVLKLGGKACII 211 (290)
Q Consensus 186 ~~~~~~~--~~l~~~~~~L~pgG~l~i~ 211 (290)
++.. ..+-...+.+.|+..++..
T Consensus 80 ---~~~~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 80 ---PNGYEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp ---SCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred ---CChHHHHHHHHHHHHHCCCCeEEEE
Confidence 2222 2233445666777776654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.23 Score=42.93 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=64.0
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CCCCCccEEEe
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~~~~~D~i~~ 181 (290)
+++++||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+.+..... ..+..+-.++. ...+.+|+++.
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~d~vi~ 224 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFD--GAIDYKNEDLAAGLKRECPKGIDVFFD 224 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCS--EEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCC--EEEECCCHHHHHHHHHhcCCCceEEEE
Confidence 48899999998 3578888888876 679999999999988883333221 11211111110 11245999986
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+..- ..++.+.+.|+++|.+++...
T Consensus 225 ~~g~-------~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 225 NVGG-------EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp SSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred CCCc-------chHHHHHHHHhhCCEEEEEee
Confidence 4331 368889999999999988643
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.29 Score=42.99 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC-C-CCC-----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-A-EDL-----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d-~-~~l-----~~~~~~~D~i~ 180 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++... . ..+..+ . .++ ....+.+|+|+
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~i~~~t~gg~Dvvi 266 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA-T--ECLNPKDYDKPIYEVICEKTNGGVDYAV 266 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC-S--EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-c--EEEecccccchHHHHHHHHhCCCCCEEE
Confidence 4789999999985 8888888887633489999999998888875432 1 122111 0 111 01123699998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-.-.. ...++...+.|+++ |.+++...
T Consensus 267 d~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 267 ECAGR------IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp ECSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ECCCC------HHHHHHHHHHHhcCCCEEEEEcc
Confidence 54321 34678889999999 99987653
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.28 Score=42.50 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=63.7
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC---CC-----CCCCCccE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED---LP-----FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~---l~-----~~~~~~D~ 178 (290)
+++++||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+++..... ..+ |..+ +. ...+.+|+
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~--~~~--d~~~~~~~~~~~~~~~~~~~d~ 228 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFD--DAF--NYKEESDLTAALKRCFPNGIDI 228 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCS--EEE--ETTSCSCSHHHHHHHCTTCEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCc--eEE--ecCCHHHHHHHHHHHhCCCCcE
Confidence 47899999997 4578888888776 579999999999888887433221 112 2221 10 11245999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
++.+... ..++...+.|+++|.+++..
T Consensus 229 vi~~~g~-------~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 229 YFENVGG-------KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred EEECCCH-------HHHHHHHHHHhcCCEEEEEc
Confidence 9865331 36788899999999998764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.42 E-value=0.17 Score=44.75 Aligned_cols=97 Identities=24% Similarity=0.294 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC---CCC----C-C-CCCCCccE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD---AED----L-P-FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d---~~~----l-~-~~~~~~D~ 178 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++... . .++..+ -.+ + . .....+|+
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~v~~~~~g~g~Dv 270 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA-D--LTLNRRETSVEERRKAIMDITHGRGADF 270 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC-c--EEEeccccCcchHHHHHHHHhCCCCCcE
Confidence 4789999999875 8888888888632699999999999998885432 1 222221 000 0 0 12235999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
|+-.... ...++...++|+++|.+++....
T Consensus 271 vid~~g~------~~~~~~~~~~l~~~G~iv~~G~~ 300 (380)
T 1vj0_A 271 ILEATGD------SRALLEGSELLRRGGFYSVAGVA 300 (380)
T ss_dssp EEECSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred EEECCCC------HHHHHHHHHHHhcCCEEEEEecC
Confidence 9854331 13577888999999999887543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.33 Score=42.71 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC-C-CCCC-----CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-A-EDLP-----FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d-~-~~l~-----~~~~~~D~i~ 180 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++... . ..+..+ . .++. ...+.+|+|+
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~~~~~~~g~D~vi 267 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA-T--DFVNPNDHSEPISQVLSKMTNGGVDFSL 267 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-C--EEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC-c--eEEeccccchhHHHHHHHHhCCCCCEEE
Confidence 4789999999875 8888888888633389999999998888875432 1 122111 0 0110 1113599998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-.... ...++.+.++|+++ |.+++...
T Consensus 268 d~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 268 ECVGN------VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp ECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCCC------HHHHHHHHHHhhcCCcEEEEEcC
Confidence 54321 34678899999999 99988654
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.065 Score=47.33 Aligned_cols=96 Identities=16% Similarity=0.233 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC-C-CCCC-----CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-A-EDLP-----FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d-~-~~l~-----~~~~~~D~i~ 180 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++... . ..+..+ . .++. ...+.+|+|+
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~v~~~~~~g~Dvvi 270 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-T--DCLNPRELDKPVQDVITELTAGGVDYSL 270 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-S--EEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-c--EEEccccccchHHHHHHHHhCCCccEEE
Confidence 4789999999885 8888888888743489999999998888875432 1 122111 0 0110 1113599998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-...- ...++.+.+.|+++ |.+++...
T Consensus 271 d~~G~------~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 271 DCAGT------AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp ESSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ECCCC------HHHHHHHHHHhhcCCCEEEEECC
Confidence 54321 34678899999999 99988654
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.19 E-value=0.42 Score=42.01 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC--CCC-----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA--EDL-----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~--~~l-----~~~~~~~D~i~ 180 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++... . ..+..+- .++ ....+.+|+|+
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~~~~~~~g~D~vi 266 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA-T--ECVNPQDYKKPIQEVLTEMSNGGVDFSF 266 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-S--EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-c--eEecccccchhHHHHHHHHhCCCCcEEE
Confidence 4789999999886 8888888888633389999999998888875432 1 1221110 111 01123599998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-.... ...++...+.|+++ |.+++...
T Consensus 267 d~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 267 EVIGR------LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp ECSCC------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred ECCCC------HHHHHHHHHHhhcCCcEEEEecc
Confidence 54321 34678889999999 99988653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.37 Score=41.90 Aligned_cols=94 Identities=15% Similarity=0.264 Sum_probs=64.2
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEEe
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~~ 181 (290)
++++||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++... . ..+..+-.++. .....+|+|+.
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~Ga-~--~~~~~~~~~~~~~v~~~~~g~g~D~vid 242 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGA-D--YVINPFEEDVVKEVMDITDGNGVDVFLE 242 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHTC-S--EEECTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-C--EEECCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 788999999974 77888888876 55 89999999998888876532 1 12211111110 11235999986
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.... ...++.+.+.|+++|.++....
T Consensus 243 ~~g~------~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 243 FSGA------PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp CSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEcc
Confidence 5332 3467888999999999988654
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.37 Score=42.33 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC-C-CCC-----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-A-EDL-----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d-~-~~l-----~~~~~~~D~i~ 180 (290)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++... . ..+..+ . .++ ....+.+|+|+
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~v~~~~~~g~D~vi 265 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-T--ECINPQDFSKPIQEVLIEMTDGGVDYSF 265 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-S--EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c--eEeccccccccHHHHHHHHhCCCCCEEE
Confidence 4789999999885 7888888887633389999999998888876532 1 122111 0 111 01123599998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-.... ...++.+.+.|+++ |.+++...
T Consensus 266 d~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 266 ECIGN------VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp ECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCCc------HHHHHHHHHhhccCCcEEEEEec
Confidence 54321 34678899999999 99988653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.3 Score=42.71 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=60.9
Q ss_pred CEEEEEcCcc-chhH-HHHH-hhCCCCe-EEEEeCCHH---HHHHHhhhCCCCCceEEEcCCCCCCCC-----CCCccEE
Q 022929 112 MLVVDVGGGT-GFTT-LGIV-KHVDAKN-VTILDQSPH---QLAKAKQKEPLKECKIVEGDAEDLPFP-----TDYADRY 179 (290)
Q Consensus 112 ~~vLDiG~G~-G~~~-~~l~-~~~~~~~-v~~vD~s~~---~~~~a~~~~~~~~v~~~~~d~~~l~~~-----~~~~D~i 179 (290)
++||-+|+|. |..+ ..++ +.. +.+ |+++|.+++ -++.+++.. .+.+ |..+..+. .+.+|+|
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~lG----a~~v--~~~~~~~~~i~~~~gg~Dvv 246 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEELD----ATYV--DSRQTPVEDVPDVYEQMDFI 246 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHTT----CEEE--ETTTSCGGGHHHHSCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHcC----Cccc--CCCccCHHHHHHhCCCCCEE
Confidence 8999999874 7777 8888 765 555 999999887 788887542 2333 33221110 1258998
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+-... . ...++.+.++|+++|.++....
T Consensus 247 id~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 247 YEATG-----F-PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC-----C-hHHHHHHHHHHhcCCEEEEEeC
Confidence 85432 1 2467888999999999988754
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.4 Score=41.67 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=63.0
Q ss_pred CCCEEEEE-cCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 110 RNMLVVDV-GGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDi-G~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
++.+||-+ |+| .|..+..+++.. +.+|+++|.+++-++.+++... . ..+..+ .++ ....+.+|+|+-.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~-~~~~~~~~~~~~~g~Dvv~d~ 224 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGA-D--IVLNHK-ESLLNQFKTQGIELVDYVFCT 224 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTC-S--EEECTT-SCHHHHHHHHTCCCEEEEEES
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCC-c--EEEECC-ccHHHHHHHhCCCCccEEEEC
Confidence 68899999 565 488888888876 5799999999999998887532 1 111111 110 0123459999854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. ....++.+.++|+++|.++...
T Consensus 225 ~g------~~~~~~~~~~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 225 FN------TDMYYDDMIQLVKPRGHIATIV 248 (346)
T ss_dssp SC------HHHHHHHHHHHEEEEEEEEESS
T ss_pred CC------chHHHHHHHHHhccCCEEEEEC
Confidence 22 2356788899999999997653
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.82 Score=39.55 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=64.2
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~ 178 (290)
+++++||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+++... . ..+ |..+.. .....+|+
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~ga-~--~~~--d~~~~~~~~~~~~~~~~~~~d~ 238 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKALGA-D--ETV--NYTHPDWPKEVRRLTGGKGADK 238 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTC-S--EEE--ETTSTTHHHHHHHHTTTTCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCC-C--EEE--cCCcccHHHHHHHHhCCCCceE
Confidence 47899999998 4688888888876 6799999999998888875421 1 122 322211 11236999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++.... . ..++.+.+.|+++|.++....
T Consensus 239 vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 239 VVDHTG-A------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp EEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred EEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence 986544 1 246778889999999988654
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.3 Score=41.71 Aligned_cols=69 Identities=9% Similarity=0.035 Sum_probs=53.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCe---EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC---C-CCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKN---VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---P-TDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~---~-~~~~D~i~~~ 182 (290)
...+++|+-||.|.+...+... +.+ +.++|+++.+.+..+.+.. +..++.+|+.++.. + ...+|+++..
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a--G~~~~~v~a~E~d~~a~~ty~~N~~--~~~~~~~DI~~i~~~~i~~~~~~Dll~gg 90 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL--GIQVDRYIASEVCEDSITVGMVRHQ--GKIMYVGDVRSVTQKHIQEWGPFDLVIGG 90 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT--TBCEEEEEEECCCHHHHHHHHHHTT--TCEEEECCGGGCCHHHHHHTCCCSEEEEC
T ss_pred CCCEEEEeCcCccHHHHHHHHC--CCccceEEEEECCHHHHHHHHHhCC--CCceeCCChHHccHHHhcccCCcCEEEec
Confidence 5679999999999999988876 444 5899999999988887764 44678889877641 1 1258999873
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.2 Score=43.53 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCc--cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEE
Q 022929 109 NRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G--~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~ 180 (290)
+++++||-+|+| .|..+..+++.. +.+|+++|.+++.++.+++... . ..+..+-.++. .....+|+++
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lga-~--~~~~~~~~~~~~~~~~~~~~~g~Dvvi 218 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLGA-A--YVIDTSTAPLYETVMELTNGIGADAAI 218 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTC-S--EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCCC-c--EEEeCCcccHHHHHHHHhCCCCCcEEE
Confidence 488999999987 577888888776 6799999999988888886532 1 12221111110 1233699998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-+..- ..+....+.|+++|.+++...
T Consensus 219 d~~g~-------~~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 219 DSIGG-------PDGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp ESSCH-------HHHHHHHHTEEEEEEEEECCC
T ss_pred ECCCC-------hhHHHHHHHhcCCCEEEEEee
Confidence 64332 123344589999999988754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.43 Score=41.06 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=64.7
Q ss_pred CCCCEEEEEc-Cc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEE
Q 022929 109 NRNMLVVDVG-GG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG-~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~ 180 (290)
+++++||-+| +| .|..+..+++.. +.+|+++|.+++.++.+++... . ..+..+-.++. .....+|+++
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga-~--~~~~~~~~~~~~~~~~~~~~~g~Dvvi 214 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKALGA-W--ETIDYSHEDVAKRVLELTDGKKCPVVY 214 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTC-S--EEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC-C--EEEeCCCccHHHHHHHHhCCCCceEEE
Confidence 4789999998 44 588888888876 6799999999999998886532 1 12221111110 2234699998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.+..- ..+....+.|+++|.+++...
T Consensus 215 d~~g~-------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 215 DGVGQ-------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp ESSCG-------GGHHHHHTTEEEEEEEEECCC
T ss_pred ECCCh-------HHHHHHHHHhcCCCEEEEEec
Confidence 65432 356788899999999988754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.34 Score=42.13 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCc--cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCC-CCccEEE
Q 022929 109 NRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPT-DYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G--~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~-~~~D~i~ 180 (290)
+++++||-+|+| .|..+..+++...+.+|+++|.+++.++.+++... . ..+...-.+. .... +.+|+++
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~~d~vi 245 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA-D--YVINASMQDPLAEIRRITESKGVDAVI 245 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC-S--EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-C--EEecCCCccHHHHHHHHhcCCCceEEE
Confidence 378999999998 46666777776525789999999998888876421 1 1221111110 0111 3699998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....- ...++.+.+.|+++|.+++...
T Consensus 246 ~~~g~------~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 246 DLNNS------EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp ESCCC------HHHHTTGGGGEEEEEEEEECCS
T ss_pred ECCCC------HHHHHHHHHHHhcCCEEEEECC
Confidence 65332 3467788899999999988654
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.81 Score=39.83 Aligned_cols=92 Identities=12% Similarity=0.184 Sum_probs=63.1
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~ 178 (290)
+++++||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++... . ..+ |..+.. .....+|+
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga-~--~~~--d~~~~~~~~~~~~~~~~~~~D~ 242 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGA-H--EVF--NHREVNYIDKIKKYVGEKGIDI 242 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEE--ETTSTTHHHHHHHHHCTTCEEE
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHcCC-C--EEE--eCCCchHHHHHHHHcCCCCcEE
Confidence 47899999997 4577777777775 6799999999998887765421 1 112 222211 11235999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++.+..- ..+....++|+++|.+++...
T Consensus 243 vi~~~G~-------~~~~~~~~~l~~~G~iv~~g~ 270 (351)
T 1yb5_A 243 IIEMLAN-------VNLSKDLSLLSHGGRVIVVGS 270 (351)
T ss_dssp EEESCHH-------HHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCh-------HHHHHHHHhccCCCEEEEEec
Confidence 9865331 356788899999999988753
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.23 E-value=2.2 Score=38.95 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=45.3
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCC
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDL 169 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l 169 (290)
..+++|+-||.|.+...+... +...+.++|+++.+.+.-+.+... ++..++..|+.++
T Consensus 88 ~~~viDLFaG~GGlslG~~~a-G~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i 146 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI-GGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDI 146 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT-TEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHH
T ss_pred cceEEEecCCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhh
Confidence 468999999999999998776 224478899999999988888632 3456778888543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.17 E-value=0.38 Score=41.75 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=63.7
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEE
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~ 180 (290)
+++++||-+|+ | .|..+..+++.. +.+|++++.+++.++.+++... . ..+..+ .++. .....+|+++
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga-~--~v~~~~-~~~~~~v~~~~~~~g~Dvvi 232 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVGA-D--IVLPLE-EGWAKAVREATGGAGVDMVV 232 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTC-S--EEEESS-TTHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCC-c--EEecCc-hhHHHHHHHHhCCCCceEEE
Confidence 47899999997 3 588888888886 6799999999988888886532 1 222222 2211 2233699998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-+..- ..++.+.+.|+++|.+++..
T Consensus 233 d~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 233 DPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp ESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred ECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 65432 24678889999999998864
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.57 Score=40.98 Aligned_cols=94 Identities=17% Similarity=0.049 Sum_probs=64.4
Q ss_pred CCCCEEEEEc-Cc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CCCCCccEEEe
Q 022929 109 NRNMLVVDVG-GG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG-~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~~~~~D~i~~ 181 (290)
+++++||-+| +| .|..+..+++.. +.+|+++|.+++.++.+++... . ..+..+-.++. .....+|+|+-
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga-~--~~~~~~~~~~~~~~~~~~~~g~D~vid 237 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGC-D--RPINYKTEPVGTVLKQEYPEGVDVVYE 237 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcCC-c--EEEecCChhHHHHHHHhcCCCCCEEEE
Confidence 4789999999 34 588888888876 6799999999988888876321 1 12221111110 11235999986
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+..- ..++.+.+.|+++|.+++...
T Consensus 238 ~~g~-------~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 238 SVGG-------AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp CSCT-------HHHHHHHHHEEEEEEEEECCC
T ss_pred CCCH-------HHHHHHHHHHhcCCEEEEEeC
Confidence 5331 467888999999999988653
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.02 E-value=0.46 Score=41.26 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=64.0
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-CC-------CCCCCccE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LP-------FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l~-------~~~~~~D~ 178 (290)
+++++||-+|+ |.|..+..+++.. +.+|+++|.+++..+.+++... ... .|..+ .. ...+.+|+
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~g~----~~~-~d~~~~~~~~~~~~~~~~~~~D~ 241 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSIGG----EVF-IDFTKEKDIVGAVLKATDGGAHG 241 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHTTC----CEE-EETTTCSCHHHHHHHHHTSCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHcCC----ceE-EecCccHhHHHHHHHHhCCCCCE
Confidence 47899999998 4577777777765 6799999998888777775321 111 13321 11 01125999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
++.+... ...++.+.+.|+++|.++.....
T Consensus 242 vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~~ 271 (347)
T 2hcy_A 242 VINVSVS------EAAIEASTRYVRANGTTVLVGMP 271 (347)
T ss_dssp EEECSSC------HHHHHHHTTSEEEEEEEEECCCC
T ss_pred EEECCCc------HHHHHHHHHHHhcCCEEEEEeCC
Confidence 9865432 34778899999999999887543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=91.75 E-value=0.065 Score=47.08 Aligned_cols=96 Identities=20% Similarity=0.158 Sum_probs=63.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCC-CC--CCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE-DL--PFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~-~l--~~~~~~~D~i~~~~~ 184 (290)
+++++||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++... . .++..+-. ++ ... +.+|+|+-...
T Consensus 178 ~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~v~~~~~~~~~~~~~~-~~~D~vid~~g 252 (360)
T 1piw_A 178 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGA-D--HYIATLEEGDWGEKYF-DTFDLIVVCAS 252 (360)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTC-S--EEEEGGGTSCHHHHSC-SCEEEEEECCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCC-C--EEEcCcCchHHHHHhh-cCCCEEEECCC
Confidence 3789999999875 77888888876 5689999999888888876432 1 12221111 10 011 35999986543
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... ...++.+.++|+++|.++....
T Consensus 253 ~~~----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 253 SLT----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CST----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCc----HHHHHHHHHHhcCCCEEEEecC
Confidence 200 1134567789999999987654
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=1.1 Score=38.96 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=62.3
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~ 178 (290)
+++++||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+++... . ..+ |..+.. .....+|+
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g~-~--~~~--~~~~~~~~~~~~~~~~~~~~d~ 234 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKLGA-A--AGF--NYKKEDFSEATLKFTKGAGVNL 234 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTC-S--EEE--ETTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-c--EEE--ecCChHHHHHHHHHhcCCCceE
Confidence 47899999984 4577777777775 6799999999998888865422 1 112 222111 12235999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++.+..- ..++...++|+++|.+++...
T Consensus 235 vi~~~G~-------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 235 ILDCIGG-------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EEESSCG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCc-------hHHHHHHHhccCCCEEEEEec
Confidence 9865432 146777899999999988754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.71 Score=39.62 Aligned_cols=92 Identities=8% Similarity=0.035 Sum_probs=62.4
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~ 178 (290)
+++++||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++... . ..+ |..+.. .....+|+
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~g~-~--~~~--~~~~~~~~~~~~~~~~~~~~D~ 212 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGA-W--QVI--NYREEDLVERLKEITGGKKVRV 212 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTC-S--EEE--ETTTSCHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-C--EEE--ECCCccHHHHHHHHhCCCCceE
Confidence 47899999993 3577777777765 5799999999988888876421 1 112 222111 11235999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++.+.. ...++.+.+.|+++|.+++...
T Consensus 213 vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 213 VYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp EEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred EEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 986543 1357888899999999988653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=91.58 E-value=0.099 Score=44.66 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=54.5
Q ss_pred CceEEEcCCCC-CC-CCCCCccEEEecCccccc--------------------CCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 158 ECKIVEGDAED-LP-FPTDYADRYVSAGSIEYW--------------------PDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 158 ~v~~~~~d~~~-l~-~~~~~~D~i~~~~~l~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
++.++++|..+ +. +++++||+|++.--.... .....+++++.++|+|||.+++.....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 46788999865 22 456789999985332211 012357789999999999998864321
Q ss_pred CchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 216 PTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.... ... ..+..+.-...+..+++++||.......+
T Consensus 101 ~~~~--~~~-g~~~~~~~~~~l~~~~~~~Gf~~~~~iiW 136 (297)
T 2zig_A 101 AVAR--RRF-GRHLVFPLHADIQVRCRKLGFDNLNPIIW 136 (297)
T ss_dssp EEEC--C-----EEEECHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cccc--ccC-CcccccccHHHHHHHHHHcCCeeeccEEE
Confidence 1000 000 00000111246778899999987665433
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=91.46 E-value=0.088 Score=46.17 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=61.8
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-CCC-CCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL-PFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~~l-~~~~~~~D~i~~~~~l~ 186 (290)
++++||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++...... ++..+- ..+ ... +.+|+|+-...-.
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~~-~g~D~vid~~g~~ 255 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGADD--YVIGSDQAKMSELA-DSLDYVIDTVPVH 255 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCCSC--EEETTCHHHHHHST-TTEEEEEECCCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCCce--eeccccHHHHHHhc-CCCCEEEECCCCh
Confidence 789999999874 77788888876 5799999999888888774433222 221110 000 011 2599998643321
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..++...++|+++|.++....
T Consensus 256 ------~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 256 ------HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp ------CCSHHHHTTEEEEEEEEECSC
T ss_pred ------HHHHHHHHHhccCCEEEEeCC
Confidence 134567789999999988754
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.96 Score=39.32 Aligned_cols=92 Identities=9% Similarity=-0.015 Sum_probs=62.7
Q ss_pred CCC--CEEEEEcC--ccchhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-------CCCCCc
Q 022929 109 NRN--MLVVDVGG--GTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYA 176 (290)
Q Consensus 109 ~~~--~~vLDiG~--G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-------~~~~~~ 176 (290)
+++ ++||-.|+ |.|..+..+++.. +. +|+++|.+++.++.+++..... ..+ |..+.. ...+.+
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g~~--~~~--d~~~~~~~~~~~~~~~~~~ 231 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELGFD--AAI--NYKKDNVAEQLRESCPAGV 231 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCCS--EEE--ETTTSCHHHHHHHHCTTCE
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCc--eEE--ecCchHHHHHHHHhcCCCC
Confidence 378 99999998 3477777777775 56 9999999998888887633221 112 222211 111259
Q ss_pred cEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
|+++.+.. ...++.+.++|+++|.+++..
T Consensus 232 d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 232 DVYFDNVG-------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp EEEEESCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred CEEEECCC-------HHHHHHHHHHhccCcEEEEEC
Confidence 99986543 156788899999999998764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.21 Score=42.99 Aligned_cols=91 Identities=14% Similarity=0.237 Sum_probs=62.4
Q ss_pred EEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cCCCCC-CCCCCCccEEEecCccccc
Q 022929 113 LVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDL-PFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 113 ~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d~~~l-~~~~~~~D~i~~~~~l~~~ 188 (290)
+||-+|+ | .|..+..+++.. +.+|+++|.+++-.+.+++... . ..+. .+.... ....+.+|+++-...
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~~~~d~v~d~~g---- 220 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSLGA-N--RILSRDEFAESRPLEKQLWAGAIDTVG---- 220 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTC-S--EEEEGGGSSCCCSSCCCCEEEEEESSC----
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCC-C--EEEecCCHHHHHhhcCCCccEEEECCC----
Confidence 3999997 4 588999999987 5699999999998888887532 1 1111 111111 123346998875321
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
...++...+.|+++|.++.....
T Consensus 221 ---~~~~~~~~~~l~~~G~iv~~G~~ 243 (324)
T 3nx4_A 221 ---DKVLAKVLAQMNYGGCVAACGLA 243 (324)
T ss_dssp ---HHHHHHHHHTEEEEEEEEECCCT
T ss_pred ---cHHHHHHHHHHhcCCEEEEEecC
Confidence 13788999999999999887543
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.67 Score=40.57 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCH---HHHHHHhhhCCCCCceEEEcCCCCCCCC------CCCccEEE
Q 022929 111 NMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSP---HQLAKAKQKEPLKECKIVEGDAEDLPFP------TDYADRYV 180 (290)
Q Consensus 111 ~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~---~~~~~a~~~~~~~~v~~~~~d~~~l~~~------~~~~D~i~ 180 (290)
+++||-+|+|. |..+..+++.. +.+|+++|.++ +.++.+++.. .+.+ | .+ .+. .+.+|+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~g----a~~v--~-~~-~~~~~~~~~~~~~d~vi 251 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEETK----TNYY--N-SS-NGYDKLKDSVGKFDVII 251 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHHT----CEEE--E-CT-TCSHHHHHHHCCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHhC----Ccee--c-hH-HHHHHHHHhCCCCCEEE
Confidence 89999999864 66777777765 56999999987 7777777542 2333 3 22 211 13599998
Q ss_pred ecCcccccCCHHHHH-HHHHhccCCCCEEEEEccC
Q 022929 181 SAGSIEYWPDPQRGI-REAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l-~~~~~~L~pgG~l~i~~~~ 214 (290)
...... ..+ +.+.+.|+++|.+++....
T Consensus 252 d~~g~~------~~~~~~~~~~l~~~G~iv~~g~~ 280 (366)
T 2cdc_A 252 DATGAD------VNILGNVIPLLGRNGVLGLFGFS 280 (366)
T ss_dssp ECCCCC------THHHHHHGGGEEEEEEEEECSCC
T ss_pred ECCCCh------HHHHHHHHHHHhcCCEEEEEecC
Confidence 654321 245 7889999999999887543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.99 E-value=1.3 Score=38.05 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=62.9
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~ 178 (290)
+++++||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++... . ..+ |..+.. .....+|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~g~-~--~~~--d~~~~~~~~~i~~~~~~~~~d~ 217 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKLGC-H--HTI--NYSTQDFAEVVREITGGKGVDV 217 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTC-S--EEE--ETTTSCHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC-C--EEE--ECCCHHHHHHHHHHhCCCCCeE
Confidence 47899999995 4577777777775 6799999999988888876421 1 112 222211 11235999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++.+..- ..++.+.+.|+++|.++....
T Consensus 218 vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 218 VYDSIGK-------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp EEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred EEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence 9865432 356788899999999988653
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=0.25 Score=42.94 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=62.8
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC-------CCCCccEEE
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF-------PTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~-------~~~~~D~i~ 180 (290)
++++||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++. . . ..+ |..+..+ ....+|+|+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a-~--~v~--~~~~~~~~~~~~~~~~~g~D~vi 236 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-A-D--RLV--NPLEEDLLEVVRRVTGSGVEVLL 236 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-C-S--EEE--CTTTSCHHHHHHHHHSSCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-H-H--hcc--CcCccCHHHHHHHhcCCCCCEEE
Confidence 688999999874 77888888876 55 899999999888877653 2 1 112 2211110 023599998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-...- ...++...+.|+++|.++....
T Consensus 237 d~~g~------~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 237 EFSGN------EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp ECSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred ECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 54321 2467888999999999988654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=90.70 E-value=1.1 Score=40.54 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=64.8
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----------------
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---------------- 170 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---------------- 170 (290)
+++.+||=+|+ | .|..+..+++.. +.++++++.+++-++.+++... . ..+...-.+..
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~d~~~~~~~~~~~~~~~~~~ 302 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAMGA-E--AIIDRNAEGYRFWKDENTQDPKEWKRF 302 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTC-C--EEEETTTTTCCSEEETTEECHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC-c--EEEecCcCcccccccccccchHHHHHH
Confidence 48899999997 5 488888888886 6799999999999998876532 1 12211111110
Q ss_pred -------CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 171 -------FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 171 -------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.....+|+|+-.-. ...++...++|+++|.+++...
T Consensus 303 ~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G~ 345 (456)
T 3krt_A 303 GKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTCAS 345 (456)
T ss_dssp HHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEESCC
T ss_pred HHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEEec
Confidence 11246999885422 1467888899999999988653
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.32 E-value=0.2 Score=43.21 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCC-EEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-CC-CC-C-CCCCCCccEEEec
Q 022929 110 RNM-LVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DA-ED-L-PFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~-~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d~-~~-l-~~~~~~~D~i~~~ 182 (290)
++. +||-+|+ |.|..+..+++.. +.++++++.+++-++.+++... .. .+.. +. .+ . ....+.+|+++-.
T Consensus 148 ~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa-~~--~i~~~~~~~~~~~~~~~~~~d~vid~ 223 (328)
T 1xa0_A 148 PERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGA-KE--VLAREDVMAERIRPLDKQRWAAAVDP 223 (328)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTC-SE--EEECC---------CCSCCEEEEEEC
T ss_pred CCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCC-cE--EEecCCcHHHHHHHhcCCcccEEEEC
Confidence 554 7999997 4588888888886 5789999999888888876421 11 1111 11 00 0 1223469998854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..- ..++...+.|+++|.+++...
T Consensus 224 ~g~-------~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 224 VGG-------RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp STT-------TTHHHHHHTEEEEEEEEECSC
T ss_pred CcH-------HHHHHHHHhhccCCEEEEEee
Confidence 321 146778899999999988653
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.19 E-value=0.07 Score=45.55 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-CCC--CCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL--PFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~~l--~~~~~~~D~i~~~~ 183 (290)
+++++||-+|+ | .|..+..+++.. +.+|+++|.+++.++.+++... . ..+..+- .++ .. +.+|+++. .
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga-~--~~~~~~~~~~~~~~~--~~~d~vid-~ 196 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGA-E--EAATYAEVPERAKAW--GGLDLVLE-V 196 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTC-S--EEEEGGGHHHHHHHT--TSEEEEEE-C
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCC-C--EEEECCcchhHHHHh--cCceEEEE-C
Confidence 47899999998 3 588888888876 5799999999888887765321 1 1222110 000 01 35999986 3
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.- ..++...+.|+++|.++...
T Consensus 197 g~-------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 197 RG-------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp SC-------TTHHHHHTTEEEEEEEEEC-
T ss_pred CH-------HHHHHHHHhhccCCEEEEEe
Confidence 21 25678889999999988764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.10 E-value=1.2 Score=38.73 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=63.7
Q ss_pred CCCCEEEEEc-Cc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CCCCCccEEEe
Q 022929 109 NRNMLVVDVG-GG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG-~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~~~~~D~i~~ 181 (290)
+++++||-+| +| .|..+..+++.. +.+|+++|.+++.++.+++... . ..+..+-.++. ...+.+|+++.
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~~~~~~~~~~~~~~~~~~~~g~Dvvid 241 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERLGA-K--RGINYRSEDFAAVIKAETGQGVDIILD 241 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTC-S--EEEETTTSCHHHHHHHHHSSCEEEEEE
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCC-C--EEEeCCchHHHHHHHHHhCCCceEEEE
Confidence 4789999995 34 588888888876 6799999999999998886532 1 12221111110 01245999986
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+..- ..++...+.|+++|.+++...
T Consensus 242 ~~g~-------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 242 MIGA-------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp SCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred CCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence 5432 256778899999999988754
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=12 Score=37.42 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=41.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCC--eEEEEeCCHHHHHHHhhhCCCCCceEEEcCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAK--NVTILDQSPHQLAKAKQKEPLKECKIVEGDA 166 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~ 166 (290)
...+++|+-||.|.++.-+... +. .+.++|+++.+.+.-+.|.. +..++..|+
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~p--~~~~~~~DI 593 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNNP--GSTVFTEDC 593 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHCT--TSEEECSCH
T ss_pred CCCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC--CCccccccH
Confidence 3468999999999999999887 54 57899999999998888864 344555543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.07 E-value=0.16 Score=44.83 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=60.0
Q ss_pred CCCCEEEEEc-Cc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecC
Q 022929 109 NRNMLVVDVG-GG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG-~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~ 183 (290)
+++++||-+| +| .|..+..+++.. +.+|++++ +++..+.+++... . ..+..+-.++. .....+|+|+-..
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~lGa-~--~v~~~~~~~~~~~~~~~~g~D~vid~~ 256 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRKLGA-D--DVIDYKSGSVEEQLKSLKPFDFILDNV 256 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHTTC-S--EEEETTSSCHHHHHHTSCCBSEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHHcCC-C--EEEECCchHHHHHHhhcCCCCEEEECC
Confidence 4789999999 45 488888888886 57999998 6777777764321 1 12221111100 0113599988543
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. .....+....+.|+++|.++....
T Consensus 257 g-----~~~~~~~~~~~~l~~~G~iv~~g~ 281 (375)
T 2vn8_A 257 G-----GSTETWAPDFLKKWSGATYVTLVT 281 (375)
T ss_dssp C-----TTHHHHGGGGBCSSSCCEEEESCC
T ss_pred C-----ChhhhhHHHHHhhcCCcEEEEeCC
Confidence 2 222345677889999999987653
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=89.78 E-value=0.87 Score=41.01 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=63.8
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE---cCCCCC--------------
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE---GDAEDL-------------- 169 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~---~d~~~l-------------- 169 (290)
+++++||-+|+ | -|..+..+++.. +.++++++.+++-++.+++... .. .+. .|..+.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~lGa-~~--~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRALGC-DL--VINRAELGITDDIADDPRRVVETGRK 294 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-CC--EEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCC-CE--EEecccccccccccccccccchhhhH
Confidence 48899999997 4 478888888876 6799999999999998876432 11 111 111000
Q ss_pred ------CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 170 ------PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 170 ------~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
......+|+++-.... ..++...+.|+++|.+++...
T Consensus 295 ~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 295 LAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEESCC
T ss_pred HHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEEec
Confidence 0012359999864332 357788899999999988754
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=89.68 E-value=0.23 Score=44.01 Aligned_cols=101 Identities=21% Similarity=0.154 Sum_probs=59.1
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++++|+=+|+|. |..+...+... +.+|+++|.+++.++.+++..... +.....+..++.-.-..+|+|+..-.....
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g~~-~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~ 244 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFCGR-IHTRYSSAYELEGAVKRADLVIGAVLVPGA 244 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTTS-SEEEECCHHHHHHHHHHCSEEEECCCCTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcCCe-eEeccCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 678999999975 66555666665 569999999999888777643321 111111111110000248999874322111
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEc
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
..+.-+.++..+.++|||.++-..
T Consensus 245 ~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 245 KAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCcceecHHHHhcCCCCcEEEEEe
Confidence 111223456778899999987654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=89.57 E-value=0.17 Score=44.48 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=61.1
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-CCC-CCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL-PFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~~l-~~~~~~~D~i~~~~~l~ 186 (290)
++++||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++..... ..+..+- ..+ ... +.+|+|+-.....
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lGa~--~v~~~~~~~~~~~~~-~~~D~vid~~g~~ 262 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFGAD--SFLVSRDQEQMQAAA-GTLDGIIDTVSAV 262 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSCCS--EEEETTCHHHHHHTT-TCEEEEEECCSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCc--eEEeccCHHHHHHhh-CCCCEEEECCCcH
Confidence 789999999875 77778888876 579999999998888777443322 1221110 000 011 2599998654321
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..++...+.|+++|.++....
T Consensus 263 ------~~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 263 ------HPLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp ------CCSHHHHHHEEEEEEEEECCC
T ss_pred ------HHHHHHHHHHhcCCEEEEEcc
Confidence 124567788999999887654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.55 E-value=4.5 Score=29.18 Aligned_cols=91 Identities=16% Similarity=0.278 Sum_probs=51.7
Q ss_pred CCEEEEEcCcc-chhH-HHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCc
Q 022929 111 NMLVVDVGGGT-GFTT-LGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGS 184 (290)
Q Consensus 111 ~~~vLDiG~G~-G~~~-~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~ 184 (290)
+.+|+=+|+|. |... ..+.+. +.+|+++|.+++.++..++.. ++.++.+|..+.. ..-..+|+|+...-
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEI---DALVINGDCTKIKTLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC---SSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHhc---CcEEEEcCCCCHHHHHHcCcccCCEEEEeeC
Confidence 46899999864 3322 233333 678999999998877665432 3456677764321 11235898887532
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEE
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
-. .....+..+.+.+.++ .+++
T Consensus 79 ~~---~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 79 KE---EVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp CH---HHHHHHHHHHHHTTCC-CEEE
T ss_pred Cc---hHHHHHHHHHHHcCCC-EEEE
Confidence 11 1123344555557765 4444
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.41 E-value=1.2 Score=38.14 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=60.4
Q ss_pred CCCCEEEEEc-Cc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-CCCCCCCccEEEecCcc
Q 022929 109 NRNMLVVDVG-GG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LPFPTDYADRYVSAGSI 185 (290)
Q Consensus 109 ~~~~~vLDiG-~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l~~~~~~~D~i~~~~~l 185 (290)
+++++||=+| +| .|..+..+++.. +.++++++ +++..+.+++... . ..+..+-.+ +.-.-..+|+|+-.-.
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~lGa-~--~~i~~~~~~~~~~~~~g~D~v~d~~g- 224 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKALGA-E--QCINYHEEDFLLAISTPVDAVIDLVG- 224 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHHTC-S--EEEETTTSCHHHHCCSCEEEEEESSC-
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHcCC-C--EEEeCCCcchhhhhccCCCEEEECCC-
Confidence 4889999996 66 488999999887 67899987 5555777776532 1 122221111 1101135999885432
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ..+....++|+++|.++....
T Consensus 225 -----~-~~~~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 225 -----G-DVGIQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp -----H-HHHHHHGGGEEEEEEEEECCS
T ss_pred -----c-HHHHHHHHhccCCCEEEEeCC
Confidence 1 234788999999999988643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.34 E-value=0.74 Score=39.72 Aligned_cols=89 Identities=12% Similarity=-0.038 Sum_probs=53.6
Q ss_pred CceEEEcCCCC-CC-CCCCCccEEEecCcccc--------------cCCHHHHHHHHHhccCCCCEEEEEccCC--Cchh
Q 022929 158 ECKIVEGDAED-LP-FPTDYADRYVSAGSIEY--------------WPDPQRGIREAYRVLKLGGKACIIGPVY--PTFW 219 (290)
Q Consensus 158 ~v~~~~~d~~~-l~-~~~~~~D~i~~~~~l~~--------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~--~~~~ 219 (290)
+..++++|..+ +. +++++||+|++.--... .......++++.++|+|||.+++..... ....
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~ 93 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVP 93 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEE
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCc
Confidence 46778888743 32 45678999998522211 1123478889999999999998864332 1000
Q ss_pred HhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 220 LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.........+.+++++.||.......+
T Consensus 94 --------~~~~~~~~~i~~~~~~~Gf~~~~~iiW 120 (323)
T 1boo_A 94 --------ARSIYNFRVLIRMIDEVGFFLAEDFYW 120 (323)
T ss_dssp --------EECCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred --------ccccchHHHHHHHHHhCCCEEEEEEEE
Confidence 000012344556788999987664433
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.10 E-value=0.23 Score=43.78 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=56.4
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++++|+=+|+|. |..+...+... +.+|+++|.+++.++.+++.... .+.....+..++.-.-..+|+|+..-.....
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~~g~-~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~ 242 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDVFGG-RVITLTATEANIKKSVQHADLLIGAVLVPGA 242 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTT-SEEEEECCHHHHHHHHHHCSEEEECCC----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHhcCc-eEEEecCCHHHHHHHHhCCCEEEECCCCCcc
Confidence 568999999964 55555555554 57999999999888777654322 1111111111110000248999865433211
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEc
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
..+.-+.+...+.+++||.++...
T Consensus 243 ~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 243 KAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ---CCSCHHHHTTSCTTCEEEECC
T ss_pred ccchhHHHHHHHhhcCCCEEEEEe
Confidence 111113466778889999887653
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=89.06 E-value=1.3 Score=32.71 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=44.3
Q ss_pred CCEEEEEcCcc-ch-hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEec
Q 022929 111 NMLVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSA 182 (290)
Q Consensus 111 ~~~vLDiG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~ 182 (290)
..+|+=+|||. |. ++..+.+. +.+|+++|.+++.++.+++. +..++.+|..+.. ..-..+|+|+..
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~~----~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSKEKIELLEDE----GFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHT----TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC----CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 45799999975 33 22333333 68999999999988877653 4677888886532 122358988864
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=88.36 E-value=0.25 Score=42.59 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=61.6
Q ss_pred CCC-EEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-C--CCCC-CCCCCCccEEEec
Q 022929 110 RNM-LVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-D--AEDL-PFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~-~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d--~~~l-~~~~~~~D~i~~~ 182 (290)
++. +||-+|+ | .|..+..+++.. +.++++++.+++.++.+++... .. .+.. + ...+ ....+.+|+++-.
T Consensus 149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa-~~--v~~~~~~~~~~~~~~~~~~~d~vid~ 224 (330)
T 1tt7_A 149 PEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGA-SE--VISREDVYDGTLKALSKQQWQGAVDP 224 (330)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTC-SE--EEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC-cE--EEECCCchHHHHHHhhcCCccEEEEC
Confidence 554 8999997 4 588888888876 5789999998887777776432 11 1111 1 1111 1223459998854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.. . ..+....+.|+++|.+++...
T Consensus 225 ~g-----~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 225 VG-----G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp CC-----T--HHHHHHHTTEEEEEEEEECCC
T ss_pred Cc-----H--HHHHHHHHhhcCCCEEEEEec
Confidence 32 2 367888999999999988654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=87.96 E-value=0.91 Score=39.34 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=62.9
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEE
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~ 180 (290)
+++++||-+|+ | .|..+..+++.. +.+|+++ .+++.++.+++... ..+. +-.++. .....+|+|+
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~lGa----~~i~-~~~~~~~~~~~~~~~~g~D~vi 221 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDLGA----TPID-ASREPEDYAAEHTAGQGFDLVY 221 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHHTS----EEEE-TTSCHHHHHHHHHTTSCEEEEE
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHcCC----CEec-cCCCHHHHHHHHhcCCCceEEE
Confidence 47899999993 4 488888888876 6799999 88888888876532 2222 211110 1223599988
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-.-. . ..+....+.|+++|.++....
T Consensus 222 d~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 247 (343)
T 3gaz_A 222 DTLG-----G--PVLDASFSAVKRFGHVVSCLG 247 (343)
T ss_dssp ESSC-----T--HHHHHHHHHEEEEEEEEESCC
T ss_pred ECCC-----c--HHHHHHHHHHhcCCeEEEEcc
Confidence 6432 1 467888899999999987643
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=87.57 E-value=2.3 Score=37.20 Aligned_cols=121 Identities=10% Similarity=0.014 Sum_probs=71.4
Q ss_pred CCCEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
...+|.=||+|. | .++..+++. +.+|++.|.+++.++.+.+. ++.. ..+..++--.....|+|+..---.
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~~~----g~~~-~~s~~e~~~~a~~~DvVi~~vp~~- 92 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALERE----GIAG-ARSIEEFCAKLVKPRVVWLMVPAA- 92 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT----TCBC-CSSHHHHHHHSCSSCEEEECSCGG-
T ss_pred cCCEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC----CCEE-eCCHHHHHhcCCCCCEEEEeCCHH-
Confidence 357899999985 4 345555555 68999999999988777643 2111 111111100012359888643222
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
..+.+++.+...|++|..++-.....+. +...+.+.+.+.|...++.-..+
T Consensus 93 --~v~~vl~~l~~~l~~g~iiId~st~~~~---------------~~~~~~~~l~~~g~~~vdapVsG 143 (358)
T 4e21_A 93 --VVDSMLQRMTPLLAANDIVIDGGNSHYQ---------------DDIRRADQMRAQGITYVDVGTSG 143 (358)
T ss_dssp --GHHHHHHHHGGGCCTTCEEEECSSCCHH---------------HHHHHHHHHHTTTCEEEEEEEEC
T ss_pred --HHHHHHHHHHhhCCCCCEEEeCCCCChH---------------HHHHHHHHHHHCCCEEEeCCCCC
Confidence 4567888888899888766544332211 23455566777788777664444
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.24 E-value=1.1 Score=39.92 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=59.8
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCC-------------CCCCC---
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE-------------DLPFP--- 172 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~-------------~l~~~--- 172 (290)
++.+|+=+|+|. |..+..++... +.+|+++|.++..++.+++.. ..+...+.. .++-.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~~G----~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~ 263 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVASLG----AKFIAVEDEEFKAAETAGGYAKEMSGEYQV 263 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHHTT----CEECCCCC-----------------CHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcC----Cceeecccccccccccccchhhhcchhhhh
Confidence 578999999996 77777777776 679999999998888877531 122221110 00000
Q ss_pred ---------CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 173 ---------TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 173 ---------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
-...|+|+..-....-+.+.-+-+++.+.+|||..++=.
T Consensus 264 ~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDv 311 (405)
T 4dio_A 264 KQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDL 311 (405)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEET
T ss_pred hhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEE
Confidence 024899986432221122222446888889999887654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=86.86 E-value=2 Score=35.30 Aligned_cols=100 Identities=13% Similarity=0.194 Sum_probs=63.9
Q ss_pred CCCEEEEEcCccch---hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC----------CCCCc
Q 022929 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF----------PTDYA 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~---~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~----------~~~~~ 176 (290)
.++++|=.|++.|. ++..+++. +.+|+.+|.+++.++...+.. ..++.++..|+.+... .-++.
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEF-GPRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh-CCcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 56889988877653 44445555 789999999988777665443 2367888999876320 01358
Q ss_pred cEEEecCcccccC-----CHH--------------HHHHHHHhccCCCCEEEEEc
Q 022929 177 DRYVSAGSIEYWP-----DPQ--------------RGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 177 D~i~~~~~l~~~~-----~~~--------------~~l~~~~~~L~pgG~l~i~~ 212 (290)
|+++.+-...... +.+ .+.+.+...++++|.++...
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 9888764433221 111 24556666777788877764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=86.62 E-value=0.33 Score=42.68 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=58.6
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++++|+=+|+|. |..+...+... +.+|+++|.+++.++.+++.... .+.....+..++.-.-..+|+|+..-.....
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-RVELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-GSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCc-eeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 458999999974 66666666665 45999999999888777654321 1222211111110000248999865433221
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEc
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
..+.-+.+...+.++|||.++-..
T Consensus 244 ~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 244 RAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCCeecCHHHHhhCCCCCEEEEEe
Confidence 111112345667889999887754
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=86.37 E-value=25 Score=34.00 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-----CCeEEEEeCCHHHHHHHhhhCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-----AKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-----~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
+..+|||+-||.|.++.-+.+... -..+.++|+++.+++--+.|..
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp 261 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP 261 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence 346899999999999888866510 1357889999999998888764
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=86.17 E-value=0.84 Score=34.83 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=56.3
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-CCCC----CCCccEEEecCcc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LPFP----TDYADRYVSAGSI 185 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l~~~----~~~~D~i~~~~~l 185 (290)
..-|||+|-|+|..--++.+.+|+.+++.+|-.-..- .... .+.-.++.+|+.+ ++.. ..+.-++.+....
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~h---p~~~-P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~ 116 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASH---PDST-PPEAQLILGDIRETLPATLERFGATASLVHADLGG 116 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCC---GGGC-CCGGGEEESCHHHHHHHHHHHHCSCEEEEEECCCC
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccC---CCCC-CchHheecccHHHHHHHHHHhcCCceEEEEeecCC
Confidence 4569999999999999999999999999999721100 0000 1223466776633 2210 2223333332222
Q ss_pred cccCCHH----HHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQ----RGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~----~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++-.+.. .+-.-+..+|.|||.++-..+
T Consensus 117 g~~~~d~a~a~~lsplI~~~la~GGi~vS~~p 148 (174)
T 3iht_A 117 HNREKNDRFARLISPLIEPHLAQGGLMVSSDR 148 (174)
T ss_dssp SCHHHHHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 2221111 233355678889998865443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.84 E-value=3.1 Score=32.07 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=55.1
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----C-CCCCccEEEecC
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----F-PTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~-~~~~~D~i~~~~ 183 (290)
.+.+|+=+|+|. |......+....+.+|+++|.+++.++.+++. ++..+.+|..+.. . .-..+|+|+...
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~----g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE----GRNVISGDATDPDFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT----TCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC----CCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence 356899999874 44333333321146899999999988877643 4566777765421 1 123589888642
Q ss_pred cccccCCHH--HHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYWPDPQ--RGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~ 212 (290)
++.. ..+-...+.+.|++.++...
T Consensus 114 -----~~~~~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 114 -----PHHQGNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp -----SSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred -----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence 2222 22223445566777776643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=85.54 E-value=11 Score=31.03 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=57.2
Q ss_pred CEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 112 MLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++||=.|+ |.++..+++.+ .+.+|++++-++........ .+++++.+|+.++. -..+|+|+.........
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~D~~d~~--~~~~d~vi~~a~~~~~~ 77 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA----SGAEPLLWPGEEPS--LDGVTHLLISTAPDSGG 77 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH----TTEEEEESSSSCCC--CTTCCEEEECCCCBTTB
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh----CCCeEEEecccccc--cCCCCEEEECCCccccc
Confidence 68999995 77776665543 26799999998765544432 46889999998866 34599998765544333
Q ss_pred CH--HHHHHHHHhccCCCCEEEEE
Q 022929 190 DP--QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 190 ~~--~~~l~~~~~~L~pgG~l~i~ 211 (290)
++ ..+++.+.+.-..-..+++.
T Consensus 78 ~~~~~~l~~a~~~~~~~~~~~v~~ 101 (286)
T 3ius_A 78 DPVLAALGDQIAARAAQFRWVGYL 101 (286)
T ss_dssp CHHHHHHHHHHHHTGGGCSEEEEE
T ss_pred cHHHHHHHHHHHhhcCCceEEEEe
Confidence 32 23444443321222455543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.51 E-value=3.3 Score=34.72 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=66.5
Q ss_pred CCCEEEEEcCccch---hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----------CCCCCc
Q 022929 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----------FPTDYA 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~---~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----------~~~~~~ 176 (290)
+++.+|--|++.|. .+..|++. +.+|+.+|.+++.++.+.+... .++..+..|+.+.. -.-++.
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~--Ga~V~i~~r~~~~l~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAE--GARVFITGRRKDVLDAAIAEIG-GGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHC-TTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHcC-CCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 67889988988874 55566666 8999999999998877655443 35677888986632 001468
Q ss_pred cEEEecCcccccCC-----HH--------------HHHHHHHhccCCCCEEEEEc
Q 022929 177 DRYVSAGSIEYWPD-----PQ--------------RGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 177 D~i~~~~~l~~~~~-----~~--------------~~l~~~~~~L~pgG~l~i~~ 212 (290)
|+++.+-....... .+ ...+.+...++.+|.++...
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 98887644332211 11 34556667788888877653
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=85.43 E-value=3.7 Score=35.86 Aligned_cols=93 Identities=15% Similarity=0.238 Sum_probs=61.4
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CCCCCccEEEe
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~~~~~D~i~~ 181 (290)
.++.+||=+|+ | .|..+..+++.. +.+|+++. +++-++.+++... . ..+...-.++. ..++.+|+++-
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~lGa-~--~vi~~~~~~~~~~v~~~t~g~~d~v~d 237 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSRGA-E--EVFDYRAPNLAQTIRTYTKNNLRYALD 237 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHTTC-S--EEEETTSTTHHHHHHHHTTTCCCEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHcCC-c--EEEECCCchHHHHHHHHccCCccEEEE
Confidence 47899999998 3 688999999886 66888885 7888888876432 1 22222111110 12234999985
Q ss_pred cCcccccCCHHHHHHHHHhcc-CCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVL-KLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~ 212 (290)
.-.- ...++.+.+.| +++|+++...
T Consensus 238 ~~g~------~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 238 CITN------VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp SSCS------HHHHHHHHHHSCTTCEEEEESS
T ss_pred CCCc------hHHHHHHHHHhhcCCCEEEEEe
Confidence 3321 24567788888 6999998865
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=84.73 E-value=0.42 Score=42.98 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=31.3
Q ss_pred CCEEEEEcCccchhHHHHHhhCC-----CCeEEEEeCCHHHHHHHhh
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVD-----AKNVTILDQSPHQLAKAKQ 152 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~-----~~~v~~vD~s~~~~~~a~~ 152 (290)
..+|+|+|+|+|.++..+++... ..+|+.||+|+...+.-++
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~ 184 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRE 184 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHH
Confidence 47999999999998877764321 2489999999876554443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=84.62 E-value=3.3 Score=36.97 Aligned_cols=92 Identities=21% Similarity=0.212 Sum_probs=60.5
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~ 184 (290)
...+|+=+|+|. |......+... +..|+++|.+++.++.+++. ++.++.+|..+.. ..-..+|+|++..
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~~~v~~~~~~----g~~vi~GDat~~~~L~~agi~~A~~viv~~- 76 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDPDHIETLRKF----GMKVFYGDATRMDLLESAGAAKAEVLINAI- 76 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCHHHHHHHHHT----TCCCEESCTTCHHHHHHTTTTTCSEEEECC-
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHhC----CCeEEEcCCCCHHHHHhcCCCccCEEEECC-
Confidence 346799999975 54444444332 68999999999999988753 4567889987632 2224589888643
Q ss_pred ccccCCHH--HHHHHHHhccCCCCEEEEE
Q 022929 185 IEYWPDPQ--RGIREAYRVLKLGGKACII 211 (290)
Q Consensus 185 l~~~~~~~--~~l~~~~~~L~pgG~l~i~ 211 (290)
++.. ..+-...+.+.|+..++.-
T Consensus 77 ----~~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 77 ----DDPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp ----SSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ----CChHHHHHHHHHHHHhCCCCeEEEE
Confidence 2333 3444556667788777764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=83.27 E-value=0.4 Score=42.38 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=58.6
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC--C-------------------
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA--E------------------- 167 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~--~------------------- 167 (290)
++.+|+=||+|. |..+...+... +.+|+++|.+++.++.+++. +.++...+. .
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~l----Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~ 257 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRSV----GAQWLDLGIDAAGEGGYARELSEAERAQQQQ 257 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHHT----TCEECCCC-------------CHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCeEEeccccccccccchhhhhHHHHhhhHH
Confidence 578999999995 66666666665 67999999999888877753 122222110 0
Q ss_pred CCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 168 DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 168 ~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+.-.-..+|+|+..-....-+.+.-+-+++.+.+|||+.++=.
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence 00000135899996532211112222346788889998877653
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=83.15 E-value=0.76 Score=40.66 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhh
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 152 (290)
++.+|+=+|+|. |..+..+++.. +.+|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 688999999995 66677777776 5689999999877666654
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=83.13 E-value=8.4 Score=32.45 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=54.0
Q ss_pred CCEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 111 NMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 111 ~~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
..+|.=||+|. | .++..+++. +.+|++.|.+++.++.+.+. +......+..+. . ...|+|+.. +
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~----g~~~~~~~~~e~-~--~~aDvvi~~-----v 72 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNPQACANLLAE----GACGAAASAREF-A--GVVDALVIL-----V 72 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----TCSEEESSSTTT-T--TTCSEEEEC-----C
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHc----CCccccCCHHHH-H--hcCCEEEEE-----C
Confidence 46799999986 4 345555555 67999999999988877654 222223444332 1 237988864 3
Q ss_pred CCH---HHHH---HHHHhccCCCCEEEEEc
Q 022929 189 PDP---QRGI---REAYRVLKLGGKACIIG 212 (290)
Q Consensus 189 ~~~---~~~l---~~~~~~L~pgG~l~i~~ 212 (290)
+++ +.++ +.+...+++|..++-..
T Consensus 73 p~~~~~~~v~~~~~~l~~~l~~g~ivv~~s 102 (303)
T 3g0o_A 73 VNAAQVRQVLFGEDGVAHLMKPGSAVMVSS 102 (303)
T ss_dssp SSHHHHHHHHC--CCCGGGSCTTCEEEECS
T ss_pred CCHHHHHHHHhChhhHHhhCCCCCEEEecC
Confidence 333 2333 45567778877665443
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.89 E-value=3.4 Score=36.32 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=57.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC-----CceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.+.+||.|+.+.|.++..++.. .++.+.-|--.....+.|...+ ++.+.. ....+ ...+|+|+....
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~---~~~~~~v~~~lp 109 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRLNGIDESSVKFLD-STADY---PQQPGVVLIKVP 109 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEE-TTSCC---CSSCSEEEEECC
T ss_pred CCCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHHcCCCccceEecc-ccccc---ccCCCEEEEEcC
Confidence 3467999999999999888765 2344432444333334432221 244433 22222 235999886322
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.........+..+...|++|+.+++....
T Consensus 110 -k~~~~l~~~L~~l~~~l~~~~~i~~~g~~ 138 (375)
T 4dcm_A 110 -KTLALLEQQLRALRKVVTSDTRIIAGAKA 138 (375)
T ss_dssp -SCHHHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred -CCHHHHHHHHHHHHhhCCCCCEEEEEecc
Confidence 12222346888999999999999877543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=82.61 E-value=3.6 Score=37.64 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=58.1
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
.++++|+=+|+|. |......++.. +.+|+++|.++...+.+++. +.+. .++.+. . ...|+|+....-.+
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~~----Ga~~--~~l~e~-l--~~aDvVi~atgt~~ 341 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMME----GFDV--VTVEEA-I--GDADIVVTATGNKD 341 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----TCEE--CCHHHH-G--GGCSEEEECSSSSC
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCEE--ecHHHH-H--hCCCEEEECCCCHH
Confidence 3789999999985 66655666665 57999999999887777643 2222 222221 1 24899987532222
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+- -.+..+.+|+||.++....
T Consensus 342 ~i-----~~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 342 II-----MLEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp SB-----CHHHHHHSCTTCEEEECSS
T ss_pred HH-----HHHHHHhcCCCcEEEEeCC
Confidence 11 1256677899999977654
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=82.44 E-value=10 Score=32.27 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=57.9
Q ss_pred CCEEEEEcCcc-c-hhHHHHHhhCCCC--eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 111 NMLVVDVGGGT-G-FTTLGIVKHVDAK--NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 111 ~~~vLDiG~G~-G-~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
..+|.=||+|. | .++..+++. +. +|+++|.+++.++.+.+... +.-...|..++ .-...|+|+..--..
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~~~~~~a~~~G~---~~~~~~~~~~~--~~~~aDvVilavp~~ 105 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDLGI---IDEGTTSIAKV--EDFSPDFVMLSSPVR 105 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHTTS---CSEEESCTTGG--GGGCCSEEEECSCGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCHHHHHHHHHCCC---cchhcCCHHHH--hhccCCEEEEeCCHH
Confidence 36899999986 3 455556555 45 89999999998888775421 11123333320 112489988653322
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
....+++++...++++..++-.
T Consensus 106 ---~~~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 106 ---TFREIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp ---GHHHHHHHHHHHSCTTCEEEEC
T ss_pred ---HHHHHHHHHhhccCCCcEEEEC
Confidence 2356888898889988766543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=82.16 E-value=17 Score=29.65 Aligned_cols=101 Identities=8% Similarity=0.088 Sum_probs=61.6
Q ss_pred CCCEEEEEcCc--cch---hHHHHHhhCCCCeEEEEeCCHHHHHHHh---hhCCCCCceEEEcCCCCCC-----CC----
Q 022929 110 RNMLVVDVGGG--TGF---TTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKECKIVEGDAEDLP-----FP---- 172 (290)
Q Consensus 110 ~~~~vLDiG~G--~G~---~~~~l~~~~~~~~v~~vD~s~~~~~~a~---~~~~~~~v~~~~~d~~~l~-----~~---- 172 (290)
.++++|=.|++ +|. ++..+++. +.+|+.++.++...+.+. +.....++.++..|+.+.. +.
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 56889999876 332 44555555 789999988764333332 2233336889999997642 00
Q ss_pred -CCCccEEEecCcccc-------c--CCHH--------------HHHHHHHhccCCCCEEEEEc
Q 022929 173 -TDYADRYVSAGSIEY-------W--PDPQ--------------RGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 173 -~~~~D~i~~~~~l~~-------~--~~~~--------------~~l~~~~~~L~pgG~l~i~~ 212 (290)
.+.+|+++.+-.... + .+.+ .+++.+...++++|.++...
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 135898887654332 0 1111 25566677788888887764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=82.16 E-value=17 Score=28.83 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=46.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCCCCc-eEEEcCCC-CCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKEC-KIVEGDAE-DLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~v-~~~~~d~~-~l~~~~~~~D~i~~~~~l 185 (290)
.+++||=.|+ +|.++..+++.+ .+.+|++++-+++..+.... .++ +++.+|+. .+.-.-+.+|+|+.....
T Consensus 20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----RGASDIVVANLEEDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----TTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----CCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence 5788998885 444444443321 26899999998776554442 267 88999986 221111358999976655
Q ss_pred cccCC
Q 022929 186 EYWPD 190 (290)
Q Consensus 186 ~~~~~ 190 (290)
....+
T Consensus 95 ~~~~~ 99 (236)
T 3e8x_A 95 GPHTG 99 (236)
T ss_dssp CTTSC
T ss_pred CCCCC
Confidence 43333
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=81.95 E-value=5.5 Score=29.79 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=52.9
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~ 184 (290)
++.+|+=+|+|. |......+... +.+|+++|.+++.++.+++ ..+...+.+|..+.. ..-..+|+|+....
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~---~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNS---EFSGFTVVGDAAEFETLKECGMEKADMVFAFTN 93 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCT---TCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHh---cCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence 678999999975 54444333333 6799999998876544331 224556666654311 11235898886532
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-. .....+..+.+.+.+...++...
T Consensus 94 ~~---~~~~~~~~~~~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 94 DD---STNFFISMNARYMFNVENVIARV 118 (155)
T ss_dssp CH---HHHHHHHHHHHHTSCCSEEEEEC
T ss_pred Cc---HHHHHHHHHHHHHCCCCeEEEEE
Confidence 11 11223334444445555555543
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=81.87 E-value=0.57 Score=41.82 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=33.7
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhh
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 152 (290)
++.+|+=+|+|. |..+..++..+ +.+|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~~~ 213 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS 213 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence 578999999996 66677777776 5699999999887777654
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.40 E-value=2.4 Score=36.63 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=55.2
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~ 181 (290)
+++++||=.|+ | .|..+..+++..++.+|++++ +++..+.++ . ... ..+. +-.++ ....+.+|+|+-
T Consensus 141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~-ga~--~~~~-~~~~~~~~~~~~~~~g~Dvv~d 214 (349)
T 4a27_A 141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-D-SVT--HLFD-RNADYVQEVKRISAEGVDIVLD 214 (349)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-G-GSS--EEEE-TTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-c-CCc--EEEc-CCccHHHHHHHhcCCCceEEEE
Confidence 48899999998 4 478888888876667899988 555555555 2 111 2222 11111 012346999985
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.-.- ..++...++|+++|.+++...
T Consensus 215 ~~g~-------~~~~~~~~~l~~~G~~v~~G~ 239 (349)
T 4a27_A 215 CLCG-------DNTGKGLSLLKPLGTYILYGS 239 (349)
T ss_dssp ECC--------------CTTEEEEEEEEEEC-
T ss_pred CCCc-------hhHHHHHHHhhcCCEEEEECC
Confidence 4321 123678899999999988753
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=80.40 E-value=28 Score=35.92 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=40.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCC--eEEEEeCCHHHHHHHhhhCCCCCceEEEcC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAK--NVTILDQSPHQLAKAKQKEPLKECKIVEGD 165 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d 165 (290)
...+++|+-||.|.++.-+... +. .+.++|+++.+.+.-+.|.. +..++..|
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~p--~~~~~~~D 903 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNNP--GTTVFTED 903 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHCT--TSEEECSC
T ss_pred CCceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC--CCcEeecc
Confidence 4568999999999999998876 54 57899999999998888864 33444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 290 | ||||
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 9e-15 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 9e-14 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-13 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 3e-13 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-12 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-12 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-12 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 4e-11 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 7e-11 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 3e-10 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 5e-10 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 3e-09 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 1e-08 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 1e-08 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-08 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 3e-08 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 6e-08 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 8e-08 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 2e-07 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 1e-06 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 1e-06 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-06 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 4e-06 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 4e-06 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 4e-06 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 4e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 5e-06 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 9e-06 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 2e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 4e-05 | |
| d1i4wa_ | 322 | c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake | 5e-05 | |
| d1vlma_ | 208 | c.66.1.41 (A:) Possible histamine N-methyltransfer | 8e-05 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 9e-05 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-04 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 6e-04 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 7e-04 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 7e-04 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 0.001 |
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 70.7 bits (172), Expect = 9e-15
Identities = 28/179 (15%), Positives = 63/179 (35%), Gaps = 3/179 (1%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKA 150
++ +D + + + +VD G G G+ L ++ + T +D LA+A
Sbjct: 9 YYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA 68
Query: 151 KQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209
++ L + + D D + + + P+ +++ +K GGK
Sbjct: 69 RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128
Query: 210 IIGPVYPTFWLSRYFADVW-MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGL 267
P + + S F + + F+ ++ + IG K + G+
Sbjct: 129 CFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGV 187
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.6 bits (167), Expect = 9e-14
Identities = 24/216 (11%), Positives = 54/216 (25%), Gaps = 39/216 (18%)
Query: 68 QHKKEAFWFYRFLSIVYDHVINP----------------GHWTEDMRDDALEPADLSNRN 111
K + + FL IVY I+P G + D + L +
Sbjct: 159 IDKIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQL-KKG 217
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------------KEPLKE 158
+D+G G G + +
Sbjct: 218 DTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 277
Query: 159 CKIVEGDAEDLPFPTDYADRY--VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216
++ D + + + + + D + + + + K+G K + +
Sbjct: 278 EFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRS 337
Query: 217 -----TFWLSRYFADVW--MLFPKEEEYIEWFQKAG 245
F+ + + +E+ + W G
Sbjct: 338 LTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHSGG 373
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 66.1 bits (160), Expect = 2e-13
Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 14/164 (8%)
Query: 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP---HQLAKAKQKEPLKE 158
++ A+ V+D+G G G T L +V + +D + + Q++ ++
Sbjct: 9 IKTAEC-RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVEN 65
Query: 159 CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF 218
+ +G AE LPFP D D + ++ D ++ +RE RVLK G+ ++ P
Sbjct: 66 VRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED 125
Query: 219 WLSRYFADVWML--------FPKEEEYIEWFQKAGFKDVQLKRI 254
+ F + E+ F +++
Sbjct: 126 PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 169
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 65.9 bits (160), Expect = 3e-13
Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 23/181 (12%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
++ + + + + +VDVGGGTG T I + + D+ P +
Sbjct: 62 SDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS 120
Query: 152 QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGG 206
V GD AD + + W D + +EA G
Sbjct: 121 GSN---NLTYVGGDMF---TSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRG 174
Query: 207 KACIIGPVYPT------FWLSRYFADVWMLFPK-----EEEYIEWFQKAGFKDVQLKRIG 255
K II V + DV M EEE+ + F +AGF+ ++ +
Sbjct: 175 KVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLT 234
Query: 256 P 256
Sbjct: 235 G 235
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 63.1 bits (152), Expect = 3e-12
Identities = 28/196 (14%), Positives = 52/196 (26%), Gaps = 11/196 (5%)
Query: 78 RFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNV 137
R +I +TE+ + ++D+G G+G +
Sbjct: 2 RIFTISESEHRIHNPFTEEKYATLGRVLRMK-PGTRILDLGSGSGEMLCTWARDHGITGT 60
Query: 138 TILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--PFPTDYADRYVSAGSIEYWPDPQRGI 195
I S ++ E L + V D + D G+
Sbjct: 61 GIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAE 120
Query: 196 REAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE-----EYIEWFQKAGFKDVQ 250
+ LK GG I P + + A + + + F G+ V+
Sbjct: 121 ELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 180
Query: 251 LKRIGPKWYRGVRRHG 266
+ G R+
Sbjct: 181 MVLADQ---EGWDRYE 193
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.5 bits (153), Expect = 3e-12
Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 30/199 (15%)
Query: 76 FYRFLSIVYDH-VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
F RFL+ +H + + + + + + ++ +GGG G L I+ V A
Sbjct: 7 FRRFLNHSTEHQCMQ--EFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQA 64
Query: 135 K------NVTILDQSPHQLAKAK------------QKEPLKECKIVEGDAEDLPFPTDYA 176
+ N +++ S Q+AK K + KE
Sbjct: 65 QYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKW 124
Query: 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE-- 234
D + Y D ++ + +L K II + W + + FP++
Sbjct: 125 DFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW-DKLWKKYGSRFPQDDL 183
Query: 235 ------EEYIEWFQKAGFK 247
++ + G K
Sbjct: 184 CQYITSDDLTQMLDNLGLK 202
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 62.7 bits (151), Expect = 3e-12
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 14/164 (8%)
Query: 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI 161
++ A L N V+DV G G V K V D + L A+ +
Sbjct: 8 MQIAALKG-NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQ 64
Query: 162 VEGDAEDLPFPTD---YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF 218
VE D + ++P+P + EAYRVLK GG+ ++ P
Sbjct: 65 VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN 124
Query: 219 WLSRYFADVWML--------FPKEEEYIEWFQKAGFKDVQLKRI 254
F + K+ ++++ ++AGF+ +L
Sbjct: 125 DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 168
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (145), Expect = 4e-11
Identities = 31/201 (15%), Positives = 66/201 (32%), Gaps = 27/201 (13%)
Query: 65 RFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFT 124
+ ++ + F VY + D+ ++ + + L VD+G G G
Sbjct: 113 HSVTDPEKLNNYEPFSPEVYGET------SFDLVAQMIDEIKM-TDDDLFVDLGSGVGQV 165
Query: 125 TLGIVKHVDAKNVTILDQSPHQLAKAKQK------------EPLKECKIVEGDAEDLPFP 172
L + + K+ ++++ A+ + E + GD +
Sbjct: 166 VLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR 225
Query: 173 TDYADRYV-SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT--FWLSRYFADVWM 229
A+ V + + P+ ++E + +K GG+ P P SR +D+
Sbjct: 226 ERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGT 285
Query: 230 LFPKEE-----EYIEWFQKAG 245
+ E + W K
Sbjct: 286 IMRVVELSPLKGSVSWTGKPV 306
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 58.6 bits (141), Expect = 7e-11
Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 13/150 (8%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDL 169
+ ++ +G G T + D V ++ +P + + + + GDA
Sbjct: 75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP 134
Query: 170 PFPTDYADRYVSAGSIEYWPD-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
+ ++ P+ + I+ A LK GG + +
Sbjct: 135 QEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYG---------MIAIKARSIDV 185
Query: 229 MLFPKE--EEYIEWFQKAGFKDVQLKRIGP 256
PKE +E E + GFK V I P
Sbjct: 186 TKDPKEIFKEQKEILEAGGFKIVDEVDIEP 215
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 56.4 bits (135), Expect = 3e-10
Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 29/184 (15%)
Query: 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
PG ++R + A+ +N + VDVG GTG + + + V +D++P ++
Sbjct: 14 PGPTAMEVRCLIMCLAEPG-KNDVAVDVGCGTGG--VTLELAGRVRRVYAIDRNPEAIST 70
Query: 150 AKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLG 205
+ ++EGDA + D V GS + R LK G
Sbjct: 71 TEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEIL---RIIKDKLKPG 127
Query: 206 GKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRH 265
G+ + + T + E +E + GF DV + + RG
Sbjct: 128 GRIIVTAILLET----------------KFEAMECLRDLGF-DVNITELN--IARGRALD 168
Query: 266 GLIM 269
M
Sbjct: 169 RGTM 172
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 56.3 bits (135), Expect = 5e-10
Identities = 31/173 (17%), Positives = 52/173 (30%), Gaps = 21/173 (12%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
LE +VDVGGG+G I+ D P + +
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI---E 118
Query: 152 QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKAC 209
PL + V GD D + W D + + ++ L GK
Sbjct: 119 NAPPLSGIEHVGGDMFA---SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI 175
Query: 210 IIGPVYP-------TFWLSRYFADVWMLFPK-----EEEYIEWFQKAGFKDVQ 250
I+ + P L ++ + E++Y + + +GF Q
Sbjct: 176 IVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 54.2 bits (129), Expect = 3e-09
Identities = 27/177 (15%), Positives = 48/177 (27%), Gaps = 14/177 (7%)
Query: 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA---K 149
+ + + D S V+DVGGG G I T+++ + +
Sbjct: 65 DEDLAYEAPADAYDWSAVRH-VLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRR 123
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209
+ EGD T D +R R L+ GG+
Sbjct: 124 FADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLL 183
Query: 210 IIGPVYPTF-----WLSRYFADVWMLFPK-----EEEYIEWFQKAGFKDVQLKRIGP 256
++ + S + F +E ++ AG + G
Sbjct: 184 VLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGS 240
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.0 bits (124), Expect = 1e-08
Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 10/148 (6%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDL 169
+ V+ +G +G T + VD + ++ S K + + DA
Sbjct: 57 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKP 116
Query: 170 PFPTDYADR-YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
+ ++ + I + A LK G+ I+ A+
Sbjct: 117 WKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK----ARSIDSTAEPE 172
Query: 229 MLFPKEEEYIEWFQKAGFKDVQLKRIGP 256
+F + +E FK V+ + P
Sbjct: 173 EVFKSVLKEME----GDFKIVKHGSLMP 196
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 52.1 bits (124), Expect = 1e-08
Identities = 31/176 (17%), Positives = 48/176 (27%), Gaps = 18/176 (10%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
+ LE +VDVGGGTG IV D +
Sbjct: 63 DHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV----IE 118
Query: 152 QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211
+ V GD P A + ++ Y L GK +
Sbjct: 119 DAPSYPGVEHVGGDMFV-SIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVA 177
Query: 212 GPVYPTFW------LSRYFADVWMLFPK-------EEEYIEWFQKAGFKDVQLKRI 254
+ P DV ML ++E+ + + AGF+ ++
Sbjct: 178 ECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCN 233
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.5 bits (122), Expect = 3e-08
Identities = 24/201 (11%), Positives = 56/201 (27%), Gaps = 16/201 (7%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
+ + V+ I L + V+DV GTG ++ +V+ +
Sbjct: 21 YADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS 80
Query: 135 KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE---------DLPFPTDYADRYVSAGSI 185
+ A ++ KE + E D+P + S
Sbjct: 81 VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSF 140
Query: 186 EYWPDPQRG-------IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238
+ PD + ++ +++ GG I Y + ++ K +
Sbjct: 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTK 200
Query: 239 EWFQKAGFKDVQLKRIGPKWY 259
+ + + + +
Sbjct: 201 DITTSVLTVNNKAHMVTLDYT 221
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 51.2 bits (121), Expect = 3e-08
Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 13/176 (7%)
Query: 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP-HQLAK 149
+ D D + V+DVGGG G I + + T+L+ + A+
Sbjct: 62 ACDQDVAFDAPAAAYDWT-NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTAR 120
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGK 207
+ K+ ++ + + AD + + + WPD R + L+ GG+
Sbjct: 121 SYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGR 180
Query: 208 ACIIGPVYP---TFWLSRYFADVWML------FPKEEEYIEWFQKAGFKDVQLKRI 254
I +F D+ ML E++ AG +++++
Sbjct: 181 ILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQL 236
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 6e-08
Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 12/148 (8%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---------EPLKECKIVEG 164
V++VG G + + + I++ + + + + V
Sbjct: 57 VLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP 115
Query: 165 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF 224
D F D Y + + A+R+LK GG + +
Sbjct: 116 TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKY 175
Query: 225 ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
+D+ ++F E + +AGF+ ++
Sbjct: 176 SDITIMFE--ETQVPALLEAGFRRENIR 201
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 49.9 bits (118), Expect = 8e-08
Identities = 25/195 (12%), Positives = 48/195 (24%), Gaps = 44/195 (22%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECKIVE 163
+ R V+D+G G G L + +D + + A+ + + +
Sbjct: 22 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 80
Query: 164 GDAEDLPFPTDYADRYV-SAGSIEYWPDPQRGIR----EAYRVLKLGGKACIIGPVYP-- 216
D+ + S S Y + R L+ GG + P
Sbjct: 81 QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI 140
Query: 217 --------------------------------TFWLSRYFADVWMLFPKEEEYIEWFQKA 244
F L + F ++ F++
Sbjct: 141 LERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRL 200
Query: 245 GFKDVQLKRIGPKWY 259
G V+ K +
Sbjct: 201 GLSLVERKGFIDFYE 215
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 2e-07
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)
Query: 133 DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY----W 188
+ Q + +A+ K L AD VSA +E
Sbjct: 115 LIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL 174
Query: 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248
QR + +L+ GG +IG + +++ A + ++ EEE E ++G+K
Sbjct: 175 ASFQRALDHITTLLRPGGHLLLIGALEESWY-LAGEARLTVVPVSEEEVREALVRSGYKV 233
Query: 249 VQLK 252
L+
Sbjct: 234 RDLR 237
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 46.1 bits (108), Expect = 1e-06
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 25/178 (14%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
+D+G G G +L + + + + + + + + +
Sbjct: 34 TLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD 93
Query: 174 DYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231
D +S + + I R K GG I+ + + + F
Sbjct: 94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF------PCTVGF 147
Query: 232 P---KEEEYIEWFQKAGFKDVQ-------LKRIGPKWYRGVRRHGLIMGCSVTGVKPA 279
P KE E ++ G+ ++ L R R R ++ K A
Sbjct: 148 PFAFKEGELRRYY--EGWDMLKYNEDVGELHRTDENGNRIKLRF-----ATMLARKTA 198
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 46.3 bits (108), Expect = 1e-06
Identities = 30/213 (14%), Positives = 57/213 (26%), Gaps = 27/213 (12%)
Query: 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPA---------------DLSNRNMLVVDVGGG 120
FY + I+ G + E + D + A + R +D+G G
Sbjct: 20 FYF--HVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAG 77
Query: 121 TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR-- 178
G +V+ + L+ +P Q + ++ D
Sbjct: 78 YGGAARFLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSY 136
Query: 179 --YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW-----MLF 231
S + + PD + +E RVLK G I P+ +
Sbjct: 137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDM 196
Query: 232 PKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRR 264
Y ++ G ++ +
Sbjct: 197 GSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSK 229
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 46.2 bits (108), Expect = 1e-06
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 6/169 (3%)
Query: 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSN-RNMLVVDVGGGTGFTTLGIVKHVDA 134
Y + +YD +I + D +E +N +D+ GTG T +
Sbjct: 2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN 61
Query: 135 KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--- 191
L Q A+ K + + ++ D +L + S Y D
Sbjct: 62 TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDL 121
Query: 192 QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240
++ + LK GG + + LS+ + + +E + W
Sbjct: 122 KKYFKAVSNHLKEGGVFIFD--INSYYKLSQVLGNNDFNYDDDEVFYYW 168
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 45.7 bits (107), Expect = 2e-06
Identities = 28/170 (16%), Positives = 46/170 (27%), Gaps = 14/170 (8%)
Query: 86 HVINPGHWTEDMRD-DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP 144
++ GH+ A L ++ V+D+G G G+ T + LD S
Sbjct: 59 AFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK 118
Query: 145 HQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKL 204
+ + + LPF D + + E RV+K
Sbjct: 119 VA--IKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKP 169
Query: 205 GGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
GG P + + Q GF Q +
Sbjct: 170 GGWVITATPGPRHLMELK---GLIYNEVHLHAPHAE-QLEGFTLQQSAEL 215
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 44.5 bits (104), Expect = 4e-06
Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 21/165 (12%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL 169
R ++++G G T + +H ++T ++ S A + + LK+ +
Sbjct: 20 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEE--AISHAQGRLKDGITYIHSRFED 75
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIRE-AYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
D V +E+ DP ++ L GG+ ++ P
Sbjct: 76 AQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGI 135
Query: 229 MLFPKE----------------EEYIEWFQKAGFKDVQLKRIGPK 257
+ + +AG + I K
Sbjct: 136 ISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFK 180
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 44.7 bits (105), Expect = 4e-06
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 19/143 (13%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAE 167
++D G G+G + + V + V ++ A+ L + ++E
Sbjct: 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE--SNLTKWGLIERVTI 159
Query: 168 DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227
+ ++ D PDP I + + LK GG+ + P
Sbjct: 160 KVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT------------- 206
Query: 228 WMLFPKEEEYIEWFQKAGFKDVQ 250
+ +E ++ Q+ F ++
Sbjct: 207 ---TNQVQETLKKLQELPFIRIE 226
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 44.6 bits (104), Expect = 4e-06
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 5/149 (3%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDA 166
+ +D G G G T ++ + +L+ H L +AK++ + K +
Sbjct: 91 GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASM 149
Query: 167 EDLPFPTDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF 224
E P + D V + Y D + + + L G
Sbjct: 150 ETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDK 209
Query: 225 ADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253
D + + Y F ++G + V+
Sbjct: 210 EDSSLTRS-DIHYKRLFNESGVRVVKEAF 237
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 44.7 bits (105), Expect = 4e-06
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 13/135 (9%)
Query: 90 PGHWTEDMRDDA--LEPADLS--------NRNMLVVDVGGGTGFTTLGIVKHVDAK-NVT 138
P ++ +R + + D S M +++VG G+G + I+ ++ K +T
Sbjct: 55 PMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLT 114
Query: 139 ILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREA 198
++++ L KA L E + D+ + I PDP +++
Sbjct: 115 VVERDEDNLKKAMDN--LSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKI 172
Query: 199 YRVLKLGGKACIIGP 213
++K G A P
Sbjct: 173 ASMMKPGSVATFYLP 187
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.7 bits (104), Expect = 5e-06
Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 9/185 (4%)
Query: 76 FYRFLSIVYD----HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH 131
Y L+ YD I D ++ + V+D+ GTG TL + +
Sbjct: 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKRE-VRRVLDLACGTGIPTLELAER 62
Query: 132 VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP-- 189
L + ++A+ K KE + + ++GD ++ F ++ + +I Y+
Sbjct: 63 GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEE 122
Query: 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249
D ++ + LK GG P + F+ R VW EE+ + + V
Sbjct: 123 DLRKLFSKVAEALKPGGVFITDFPCW--FYGGRDGPVVWNEQKGEEKLVIMDWREVEPAV 180
Query: 250 QLKRI 254
Q R
Sbjct: 181 QKLRF 185
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (103), Expect = 9e-06
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 9/140 (6%)
Query: 74 FWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD 133
F Y I + ++ T R+ ++ DL ++ +V+DVG GTG ++ KH
Sbjct: 4 FDSYDHYGIHEE-MLQDTVRTLSYRNAIIQNKDLF-KDKIVLDVGCGTGILSMFAAKHG- 60
Query: 134 AKNVTILDQSPHQLA---KAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGS---IEY 187
AK+V +D S + + ++ G ED+ P D +S + Y
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 188 WPDPQRGIREAYRVLKLGGK 207
+ L GG
Sbjct: 121 ESMMDTVLYARDHYLVEGGL 140
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.7 bits (100), Expect = 2e-05
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK------EPLKECKIVEG 164
V++ G G+G TL +++ V V +Q A++ +P ++V
Sbjct: 98 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157
Query: 165 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213
D D P DR + P + R+L GG +
Sbjct: 158 DLADSELPDGSVDRA-----VLDMLAPWEVLDAVSRLLVAGGVLMVYVA 201
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 4e-05
Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 10/184 (5%)
Query: 74 FWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD 133
F Y I + ++ TE RD + ++ +V+DVG GTG ++ K
Sbjct: 1 FSSYGHYGIHEE-MLKDKIRTESYRD-FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG- 57
Query: 134 AKNVTILDQSPHQLA---KAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
AK V +DQS + + +++G E++ P + D +S +
Sbjct: 58 AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLF 117
Query: 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250
Y K K + P T L + W GFK
Sbjct: 118 ESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKH----ADRIAFWDDVYGFKMSC 173
Query: 251 LKRI 254
+K+
Sbjct: 174 MKKA 177
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (97), Expect = 5e-05
Identities = 12/89 (13%), Positives = 26/89 (29%)
Query: 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI 161
L + V+D+ G G + + ++L++ K +I
Sbjct: 35 LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQI 94
Query: 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
++ D D ++ D D
Sbjct: 95 LKRDPYDWSTYSNLIDEERIFVPEVQSSD 123
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Score = 40.5 bits (93), Expect = 8e-05
Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 20/182 (10%)
Query: 93 WTEDMRDDALEPADLSNR---NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
W R L V++G GTG V K ++ S
Sbjct: 16 WFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRF------AVPLKIKIGVEPSERM--- 66
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209
+ + +++G AE+LP + D + +I + DP+R ++EAYR+LK GG
Sbjct: 67 -AEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLI 125
Query: 210 IIGPVYPTFW-------LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGV 262
+ +F + F EE ++ +KAGF++ ++ + K +
Sbjct: 126 VGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSEL 185
Query: 263 RR 264
Sbjct: 186 SE 187
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 9e-05
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 12/117 (10%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAE 167
N V++ G G+G +L + K V ++ V + AK+ E
Sbjct: 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE 156
Query: 168 DLPFPTDYADRYVSAGSIEYW-----------PDPQRGIREAYRVLKLGGKACIIGP 213
+ P D+ + +S + + +P + Y LK GG +
Sbjct: 157 EWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV 213
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 1e-04
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 18/138 (13%)
Query: 84 YDHVINPGHWTEDMRD--------DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK 135
Y H G E ++D +++ ++ +V+DVG GTG + K A+
Sbjct: 2 YAHF---GIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG-AR 57
Query: 136 NVTILDQSPHQLAK---AKQKEPLKECKIVEGDAEDLPFPTDYADR---YVSAGSIEYWP 189
V ++ S K + I++G E++ P + D + Y
Sbjct: 58 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 117
Query: 190 DPQRGIREAYRVLKLGGK 207
+ + L G
Sbjct: 118 MLNTVLHARDKWLAPDGL 135
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 38.2 bits (87), Expect = 6e-04
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED 168
+ V+D+ G G + + + + + + A+ K + + GDA
Sbjct: 36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK 95
Query: 169 LPFPTDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
L F D + SI ++ + + +E RVLK GK + +
Sbjct: 96 LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESL 155
Query: 227 VWM-------LFPKEEE---YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLI 268
V + P +EE IE+ + V+ G + +
Sbjct: 156 VVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFT 207
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 37.9 bits (87), Expect = 7e-04
Identities = 27/166 (16%), Positives = 45/166 (27%), Gaps = 22/166 (13%)
Query: 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
H T + AL V+D+G G+G + K +D P L +
Sbjct: 102 GHHETTRLALKALARHLRPGDK--VLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQ 157
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209
A+ + + + A Y L GG+A
Sbjct: 158 AEANAKRNGVRPRFLEGSLEAALPFGPFDLLVA--NLYAELHAALAPRYREALVPGGRAL 215
Query: 210 IIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255
+ G +L + E AGF+ ++ G
Sbjct: 216 LTG----------------ILKDRAPLVREAMAGAGFRPLEEAAEG 245
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 37.8 bits (86), Expect = 7e-04
Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 37/213 (17%)
Query: 74 FWFYRFLSIVYDHVIN---PGHWTEDMRDDALEPADLSNR-NMLVVDVGGGTGFTTLGIV 129
F F ++ V+ +I PG+ ++ A+ + V D+G G TL
Sbjct: 1 FIFDENVAEVFPDMIQRSVPGY--SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSAR 58
Query: 130 KHVDAKNV--TILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFPTDYADRYVSAG 183
++++ NV +D S + + +Q +I+ D +
Sbjct: 59 RNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118
Query: 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK---------- 233
D + + Y L G + + K
Sbjct: 119 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEV 178
Query: 234 ---------------EEEYIEWFQKAGFKDVQL 251
E + + GF V+L
Sbjct: 179 SQKRTALENVMRTDSIETHKVRLKNVGFSQVEL 211
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 37.4 bits (85), Expect = 0.001
Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 23/215 (10%)
Query: 70 KKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIV 129
K ++ FY ++ YD + W R + V+D+GGGTG
Sbjct: 2 KLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGK----WS 57
Query: 130 KHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189
+ + ++ P + +E + + + + + Y
Sbjct: 58 LFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117
Query: 190 DPQRGIREAYRVLKLGGKACIIGPVYPTF-----------WLSRYFADVWMLFPKEEEYI 238
+ + E RVL G + TF ++R+
Sbjct: 118 NKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSF 177
Query: 239 EWFQ--------KAGFKDVQLKRIGPKWYRGVRRH 265
+ GF+ V ++ IG Y R
Sbjct: 178 NSYAFKPEDLDSLEGFETVDIRGIGVMEYPDERIS 212
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.92 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.91 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.91 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.89 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.89 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.87 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.86 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.86 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.85 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.85 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.84 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.84 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.84 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.83 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.83 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.82 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.82 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.82 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.82 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.82 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.81 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.8 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.78 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.77 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.76 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.75 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.74 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.73 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.73 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.71 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.7 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.7 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.69 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.69 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.68 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.68 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.65 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.65 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.65 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.64 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.62 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.62 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.61 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.58 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.57 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.56 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.55 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.54 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.51 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.5 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.49 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.48 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.47 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.38 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.35 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.34 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.3 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.3 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.26 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.22 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.21 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.2 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.19 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.17 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.15 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.15 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.08 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.01 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.97 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.89 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.86 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.84 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.81 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.8 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.79 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.79 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.74 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.72 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.71 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.7 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.65 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.63 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.62 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.61 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.61 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.57 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.57 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.54 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.41 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.33 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.31 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.25 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.23 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.19 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.1 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.94 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.89 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.79 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.66 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.45 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.43 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.35 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.22 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.12 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.03 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.03 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.02 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.93 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.92 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.86 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.83 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.71 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.59 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.57 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.49 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.4 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.38 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.33 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.3 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.04 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.0 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.89 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.53 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.04 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.04 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.86 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.84 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.55 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.48 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.47 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.42 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.38 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.28 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.15 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.03 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.0 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.1 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.1 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 92.69 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 91.46 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.52 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.52 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.87 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 89.69 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 89.37 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 89.05 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.66 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.3 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 86.39 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 85.78 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 85.2 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 83.78 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 83.5 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 83.06 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 82.75 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 82.41 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 82.12 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 81.36 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 81.03 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 80.75 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.92 E-value=7.4e-25 Score=182.33 Aligned_cols=151 Identities=25% Similarity=0.346 Sum_probs=122.0
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCCCCcc
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~~~~D 177 (290)
+++..... ++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++. ..++++++++|+.++|+++++||
T Consensus 7 ll~~~~l~-~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD 83 (231)
T d1vl5a_ 7 LMQIAALK-GNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH 83 (231)
T ss_dssp HHHHHTCC-SCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred HHHhcCCC-CcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence 34444443 7899999999999999999988 579999999999999998763 34679999999999999999999
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhH-hhhhH-------HHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFA-------DVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
+|+|..+++|+++++++++++.++|||||++++.++..+.... ..... ..+...++.+++.++|+++||+++
T Consensus 84 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 163 (231)
T d1vl5a_ 84 IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELE 163 (231)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEE
T ss_pred cccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999999999998765433221 11111 112235688999999999999988
Q ss_pred EEEEc
Q 022929 250 QLKRI 254 (290)
Q Consensus 250 ~~~~~ 254 (290)
++..+
T Consensus 164 ~~~~~ 168 (231)
T d1vl5a_ 164 ELHCF 168 (231)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=7.8e-24 Score=176.73 Aligned_cols=150 Identities=20% Similarity=0.317 Sum_probs=122.7
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccE
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADR 178 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~ 178 (290)
++.... +++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..++.++++|++++|+++++||+
T Consensus 9 ~~~~~~-~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 85 (234)
T d1xxla_ 9 IKTAEC-RAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI 85 (234)
T ss_dssp HHHHTC-CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred HHHhCC-CCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccce
Confidence 344444 48999999999999999999998 5799999999999999987732 35799999999999999999999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhH-hhhhH-------HHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFA-------DVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
|+|..+++|++++..+++++.++|||||.+++.+...+.... ..+.. ..+...++..+|.++++++||.+.+
T Consensus 86 v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~ 165 (234)
T d1xxla_ 86 ITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQD 165 (234)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEE
T ss_pred eeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeE
Confidence 999999999999999999999999999999998765443222 22211 1122345788999999999998877
Q ss_pred EEEc
Q 022929 251 LKRI 254 (290)
Q Consensus 251 ~~~~ 254 (290)
+..+
T Consensus 166 ~~~~ 169 (234)
T d1xxla_ 166 IQKW 169 (234)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=9.2e-24 Score=173.02 Aligned_cols=135 Identities=25% Similarity=0.350 Sum_probs=112.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|.++..+. +++|+|+|+.+++.|+++ +++++++|++++++++++||+|+|..+++|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~ 105 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----GVFVLKGTAENLPLKDESFDFALMVTTICFVD 105 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----cccccccccccccccccccccccccccccccc
Confidence 56789999999999987763 468999999999999974 68999999999999999999999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHH-------HhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-------VWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++.++++++.++|+|||.+++.++............. ....+++.+++.++|+++||+++++...
T Consensus 106 d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~ 177 (208)
T d1vlma_ 106 DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 177 (208)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEEE
Confidence 9999999999999999999999887665432221111 1123578999999999999998887763
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.89 E-value=4.6e-23 Score=176.80 Aligned_cols=146 Identities=17% Similarity=0.181 Sum_probs=121.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++.. ..+++++++|+.++|+++++||+|++..+
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 144 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccch
Confidence 488999999999999999999875 6799999999999999987632 35799999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh----HhhhhHHH-hhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW----LSRYFADV-WMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
++|++++.++++++.++|||||.+++.++...... ........ ...+.+.+++.++++++||+.+.+....
T Consensus 145 l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~ 220 (282)
T d2o57a1 145 FLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP 220 (282)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred hhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEECc
Confidence 99999999999999999999999999876433211 11111111 1234688999999999999999888764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.2e-22 Score=170.67 Aligned_cols=162 Identities=17% Similarity=0.130 Sum_probs=128.5
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAE 167 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~ 167 (290)
+.+......+.+.+.+. ++++|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++. ..++++|+.+|+.
T Consensus 16 p~~~~~~~~l~~~~~l~-pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~ 93 (245)
T d1nkva_ 16 PFTEEKYATLGRVLRMK-PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA 93 (245)
T ss_dssp SCCHHHHHHHHHHTCCC-TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred CCCHHHHHHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHh
Confidence 34556666666666664 89999999999999999998876 579999999999999998763 2356899999999
Q ss_pred CCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHH-----HhhcCCCHHHHHHHHH
Q 022929 168 DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-----VWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 168 ~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ll~ 242 (290)
++ +.+++||+|+|..+++|++++.++++++.++|||||++++.++............. .+..+.+..++.+.++
T Consensus 94 ~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
T d1nkva_ 94 GY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFD 172 (245)
T ss_dssp TC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHH
T ss_pred hc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHH
Confidence 87 46778999999999999999999999999999999999998764332211111111 1223568899999999
Q ss_pred HCCCcEEEEEEcCc
Q 022929 243 KAGFKDVQLKRIGP 256 (290)
Q Consensus 243 ~aGf~~v~~~~~~~ 256 (290)
++||++++....+.
T Consensus 173 ~aG~~~v~~~~~~~ 186 (245)
T d1nkva_ 173 DLGYDVVEMVLADQ 186 (245)
T ss_dssp TTTBCCCEEEECCH
T ss_pred HcCCEEEEEEeCCH
Confidence 99999988776653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.4e-22 Score=167.76 Aligned_cols=143 Identities=15% Similarity=0.050 Sum_probs=116.2
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
.++.+|||||||+|.++..++... ..+|+|+|+|+.+++.|+++... .+++|+++|+.++++++++||+|++..++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 467899999999999999887664 46899999999999999988653 35789999999998888899999999999
Q ss_pred cccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 186 EYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 186 ~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+|+++++ ++++++.++|+|||.+++.+........... ......++.+++.++++++||++++.+..
T Consensus 138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~aGf~ii~~~~q 206 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD--VDSSVCRDLDVVRRIICSAGLSLLAEERQ 206 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEET--TTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccchhhhhhhHHHHHHHhcCCcceEEEEEccccccccccc--CCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence 9998764 7999999999999999998765432111100 11122357899999999999999988764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.86 E-value=1.8e-21 Score=161.34 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=115.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++.. .++.++.+|+.++++ +++||+|++..+++|++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~-~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK-DGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID 95 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC-SCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc-ccccccccccccccc-ccccccccccceeEecC
Confidence 5678999999999999999887 6789999999999999998864 478999999988776 46799999999999999
Q ss_pred CHHHHHHHHH-hccCCCCEEEEEccCCCchhHhh----------------hhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 190 DPQRGIREAY-RVLKLGGKACIIGPVYPTFWLSR----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 190 ~~~~~l~~~~-~~L~pgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
++..+++++. ++|+|||.+++..+......... .....+...++.+++.++++++||++++.+
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 9999999998 79999999999877654332110 011112235689999999999999988866
Q ss_pred E
Q 022929 253 R 253 (290)
Q Consensus 253 ~ 253 (290)
.
T Consensus 176 ~ 176 (225)
T d2p7ia1 176 G 176 (225)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.86 E-value=2.9e-21 Score=160.02 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=109.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
+++.+|||+|||+|..+..+++.. |+.+|+|+|+|++|++.|+++.. ..++++...|..++++ ..+|+|++.
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~--~~~d~i~~~ 115 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI--KNASMVILN 115 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC--CSEEEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc--ccceeeEEe
Confidence 378999999999999999998763 67899999999999999998632 2346777777776654 458999999
Q ss_pred CcccccC--CHHHHHHHHHhccCCCCEEEEEccCCCchhHh-hhhH------------------------HHhhcCCCHH
Q 022929 183 GSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-RYFA------------------------DVWMLFPKEE 235 (290)
Q Consensus 183 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~~~~------------------------~~~~~~~~~~ 235 (290)
.++++++ ++.++++++.++|||||.+++.+......... .... ......++.+
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 195 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE 195 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence 9999985 56789999999999999999987654322111 0000 0011235889
Q ss_pred HHHHHHHHCCCcEEEEE
Q 022929 236 EYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 236 ~~~~ll~~aGf~~v~~~ 252 (290)
++.++|+++||+.+++.
T Consensus 196 ~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 196 THKVRLKNVGFSQVELW 212 (225)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCceEEe
Confidence 99999999999988764
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.85 E-value=1.9e-21 Score=163.98 Aligned_cols=151 Identities=16% Similarity=0.167 Sum_probs=119.1
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCCCCcc
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~~~~D 177 (290)
..+++.+... +..+|||+|||+|.++..++... ..+|+++|+|+.+++.|+++... +++++++.|+.++++++++||
T Consensus 83 ~~fl~~l~~~-~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 83 RNFIASLPGH-GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTSTTC-CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhCCCC-CCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 3445555443 67899999999999999887664 45899999999999999988653 457899999999988888999
Q ss_pred EEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhhH-HHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 178 RYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA-DVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+|++..+++|+++++ ++++++.++|+|||.+++.+........ ... .....+++.+++.++++++||++++.+.
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~--~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF--LVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE--EEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc--eecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 999999999998865 7899999999999999998764432100 000 0111245889999999999999998775
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.85 E-value=9.4e-21 Score=159.70 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=116.6
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCCCCCCCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~~l~~~~~~ 175 (290)
.++....+. +..+|||||||+|.++..+++.+|+.+++++|+ +++++.++++. ...+++++.+|+.+ +.+ .+
T Consensus 71 ~~~~~~d~~-~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~-~~ 146 (253)
T d1tw3a2 71 APAAAYDWT-NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RK 146 (253)
T ss_dssp HHHHHSCCT-TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SC
T ss_pred HHHhhcCCc-cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hcc-cc
Confidence 344444443 668999999999999999999999999999998 66788777652 23579999999866 333 35
Q ss_pred ccEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchh----HhhhhH-----HHhhcCCCHHHHHHHHHHC
Q 022929 176 ADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFW----LSRYFA-----DVWMLFPKEEEYIEWFQKA 244 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~ll~~a 244 (290)
||+|++.+++|++++.+ ++|++++++|||||.+++.+....... ....++ ......++.++|.++++++
T Consensus 147 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~A 226 (253)
T d1tw3a2 147 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASA 226 (253)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred hhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHC
Confidence 99999999999998764 789999999999999999875432211 111111 1112346899999999999
Q ss_pred CCcEEEEEEcCc
Q 022929 245 GFKDVQLKRIGP 256 (290)
Q Consensus 245 Gf~~v~~~~~~~ 256 (290)
||+++++..++.
T Consensus 227 Gf~~~~v~~~~~ 238 (253)
T d1tw3a2 227 GLVVEEVRQLPS 238 (253)
T ss_dssp TEEEEEEEEEEC
T ss_pred CCeEEEEEECCC
Confidence 999999888653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=6.5e-21 Score=159.30 Aligned_cols=134 Identities=26% Similarity=0.354 Sum_probs=106.8
Q ss_pred HHHHhHHhHhhhcccCCCc--ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh
Q 022929 74 FWFYRFLSIVYDHVINPGH--WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151 (290)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 151 (290)
+.||+.++..|+....... ....+...++.... .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+
T Consensus 6 ~~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~ 81 (246)
T d2avna1 6 WEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYL--KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAR 81 (246)
T ss_dssp HHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHC--CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc--CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccc
Confidence 4677888888876544321 12233333333322 36789999999999999999987 789999999999999999
Q ss_pred hhCCCCCceEEEcCCCCCCCCCCCccEEEec-CcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 152 QKEPLKECKIVEGDAEDLPFPTDYADRYVSA-GSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 152 ~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~-~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
++... .++.+|++++++++++||+|+|. .+++|++++.++++++.++|||||.+++..+.
T Consensus 82 ~~~~~---~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 82 EKGVK---NVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp HHTCS---CEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccccc---ccccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 87542 36789999999999999999985 68999999999999999999999999987654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=1.4e-20 Score=161.07 Aligned_cols=162 Identities=22% Similarity=0.212 Sum_probs=124.8
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~ 171 (290)
...+.+++.+.+. ++.+|||||||.|.++..+++.+ +.+|+|+++|++.++.++++.. ...+.+...|.. +
T Consensus 48 ~k~~~~~~~l~l~-~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~ 122 (291)
T d1kpia_ 48 AKRKLALDKLNLE-PGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---E 122 (291)
T ss_dssp HHHHHHHHTTCCC-TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---G
T ss_pred HHHHHHHHhcCCC-CCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---c
Confidence 3455666777764 89999999999999999999887 5799999999999998876632 234667777653 4
Q ss_pred CCCCccEEEecCcccccCC---------HHHHHHHHHhccCCCCEEEEEccCCCchhHh---------------hhhHH-
Q 022929 172 PTDYADRYVSAGSIEYWPD---------PQRGIREAYRVLKLGGKACIIGPVYPTFWLS---------------RYFAD- 226 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~---------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---------------~~~~~- 226 (290)
.+++||.|+|..+++|+++ .+.+++++.++|||||++++.+...+..... .++..
T Consensus 123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~ky 202 (291)
T d1kpia_ 123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE 202 (291)
T ss_dssp CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHH
Confidence 4678999999999999976 4789999999999999999876654322111 01110
Q ss_pred --HhhcCCCHHHHHHHHHHCCCcEEEEEEcCccccccc
Q 022929 227 --VWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGV 262 (290)
Q Consensus 227 --~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~ 262 (290)
....+++..++...++++||++.+++.++.++...+
T Consensus 203 iFpgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL 240 (291)
T d1kpia_ 203 IFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTL 240 (291)
T ss_dssp TCTTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHH
T ss_pred hcCCCCCCCHHHHHhhhcccccccceeeeccccHHHHH
Confidence 112356899999999999999999999998876444
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.84 E-value=2.2e-20 Score=156.60 Aligned_cols=133 Identities=21% Similarity=0.157 Sum_probs=100.3
Q ss_pred HHhHHhHhhhcccCCCcccHHHHHhhccccC-CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC
Q 022929 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPAD-LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~ 154 (290)
.|+.++.+|+.++.+..-.......+...+. ...++++|||||||+|.++..+++. +.+++|+|+|++|++.|+++.
T Consensus 2 ~y~~~A~~YD~l~~~~~~y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~ 79 (246)
T d1y8ca_ 2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKF 79 (246)
T ss_dssp CHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccc
Confidence 3667788888776654222222222222211 1125689999999999999999998 679999999999999998764
Q ss_pred C--CCCceEEEcCCCCCCCCCCCccEEEec-CcccccCCH---HHHHHHHHhccCCCCEEEEE
Q 022929 155 P--LKECKIVEGDAEDLPFPTDYADRYVSA-GSIEYWPDP---QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 155 ~--~~~v~~~~~d~~~l~~~~~~~D~i~~~-~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~ 211 (290)
. ..+++++++|+.++++. ++||+|+|. ++++|+.++ .++++++.++|+|||.+++.
T Consensus 80 ~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 80 RSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp HHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccCccceeeccchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3 23689999999888764 469999985 677777654 46999999999999999874
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.83 E-value=1.4e-20 Score=161.01 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=116.6
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~ 174 (290)
...+++......++.+|||||||+|.++..+++..+ +.+|+|+|+|+.+++.|+++... .+++|...|+.++++++
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~- 93 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND- 93 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccC-
Confidence 333344332334778999999999999999999876 47899999999999999987443 35889999999988764
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch------------h------HhhhhHHHhhc----CC
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------------W------LSRYFADVWML----FP 232 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~------------~------~~~~~~~~~~~----~~ 232 (290)
+||+|+|..+++|++++..+++++.++|||||.+++.++..... . ....+...... ..
T Consensus 94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (281)
T d2gh1a1 94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 173 (281)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTT
T ss_pred CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCC
Confidence 69999999999999999999999999999999999987642110 0 00111111110 01
Q ss_pred CHHHHHHHHHHCCCcEEEEEEc
Q 022929 233 KEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 233 ~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
-..++..+|+++||+.+++...
T Consensus 174 i~~~l~~~l~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 174 IGMKIPIYLSELGVKNIECRVS 195 (281)
T ss_dssp GGGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEEEe
Confidence 1246778999999999887654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=1.8e-20 Score=159.91 Aligned_cols=159 Identities=22% Similarity=0.275 Sum_probs=121.4
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~ 172 (290)
..+.+++.+.+. ++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|+++... .++.+...|..++
T Consensus 40 k~~~~~~~l~l~-~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--- 114 (280)
T d2fk8a1 40 KVDLNLDKLDLK-PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--- 114 (280)
T ss_dssp HHHHHHTTSCCC-TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---
T ss_pred HHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---
Confidence 355667777654 89999999999999999998886 57999999999999999877432 3466677776654
Q ss_pred CCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHh---------------hhhHH---HhhcCC
Q 022929 173 TDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLS---------------RYFAD---VWMLFP 232 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---------------~~~~~---~~~~~~ 232 (290)
+++||.|++..+++|+.+. ..+++++.++|||||.+++.+......... .++.. ....++
T Consensus 115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP 194 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 194 (280)
T ss_dssp CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCccc
Confidence 3569999999999999654 789999999999999999875433221100 01110 011357
Q ss_pred CHHHHHHHHHHCCCcEEEEEEcCccccc
Q 022929 233 KEEEYIEWFQKAGFKDVQLKRIGPKWYR 260 (290)
Q Consensus 233 ~~~~~~~ll~~aGf~~v~~~~~~~~~~~ 260 (290)
+..++.+.++++||++.+++.++.++.+
T Consensus 195 S~~~l~~~~e~aGf~v~~~~~~~~hYa~ 222 (280)
T d2fk8a1 195 STEMMVEHGEKAGFTVPEPLSLRPHYIK 222 (280)
T ss_dssp CHHHHHHHHHHTTCBCCCCEECHHHHHH
T ss_pred chHhhhhhHHhhccccceeeecccCHHH
Confidence 8999999999999999999998876543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=1.3e-19 Score=154.62 Aligned_cols=162 Identities=22% Similarity=0.208 Sum_probs=125.3
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~ 171 (290)
...+.+++.+.+. ++.+|||||||.|.++..+++.. +++|+|+++|++.++.|+++.. ..++++...|..+++
T Consensus 49 ~k~~~~~~~l~l~-~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 125 (285)
T d1kpga_ 49 AKIDLALGKLGLQ-PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD- 125 (285)
T ss_dssp HHHHHHHTTTTCC-TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-
T ss_pred HHHHHHHHHcCCC-CCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc-
Confidence 3345667777764 99999999999999999999987 6899999999999999987632 346888999987654
Q ss_pred CCCCccEEEecCcccccC--CHHHHHHHHHhccCCCCEEEEEccCCCchh------------Hh---hhhHH---HhhcC
Q 022929 172 PTDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFW------------LS---RYFAD---VWMLF 231 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------------~~---~~~~~---~~~~~ 231 (290)
++||.|++..+++|+. +...+++++.++|||||.+++.+....... .. .++.. ....+
T Consensus 126 --~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~l 203 (285)
T d1kpga_ 126 --EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL 203 (285)
T ss_dssp --CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred --ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCC
Confidence 4699999999999995 457899999999999999998654321110 00 01110 01235
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEcCccccccc
Q 022929 232 PKEEEYIEWFQKAGFKDVQLKRIGPKWYRGV 262 (290)
Q Consensus 232 ~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~ 262 (290)
++..++..+++++||++++++.++.++.+..
T Consensus 204 Psl~~~~~~~e~agf~v~~~~~~~~hYarTl 234 (285)
T d1kpga_ 204 PSIPMVQECASANGFTVTRVQSLQPHYAKTL 234 (285)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEECHHHHHHHH
T ss_pred CChhhHHHHHHHhchhhcccccchhhHHHHH
Confidence 7899999999999999999999987765443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=3.6e-21 Score=161.74 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=100.3
Q ss_pred HHHhHHhHhhhcccCCCc--c--cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHH
Q 022929 75 WFYRFLSIVYDHVINPGH--W--TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150 (290)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a 150 (290)
.+|+.++++|+.+..... + .......++...... ++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a 79 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKR-EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVA 79 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSS-CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred chhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC-CCCEEEEeCCCCCccchhhccc--ceEEEEEeecccccccc
Confidence 456666666666432110 0 111233344444433 6789999999999999999987 67999999999999999
Q ss_pred hhhCCC--CCceEEEcCCCCCCCCCCCccEEEec-CcccccC--CHHHHHHHHHhccCCCCEEEEEc
Q 022929 151 KQKEPL--KECKIVEGDAEDLPFPTDYADRYVSA-GSIEYWP--DPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 151 ~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~-~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+++... .+++++++|++++++++ +||+|+|. ++++|++ +..++|+++.++|||||.+++..
T Consensus 80 ~~~~~~~~~~i~~~~~d~~~l~~~~-~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 80 RRKAKERNLKIEFLQGDVLEIAFKN-EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp HHHHHHTTCCCEEEESCGGGCCCCS-CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccchheehhhhhccccc-ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 987432 36899999999998775 69999986 5666663 34589999999999999998853
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=2.3e-19 Score=145.52 Aligned_cols=162 Identities=18% Similarity=0.183 Sum_probs=112.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||||||+|..+..++++ +.+|+|+|+|+.+++.++++. ...++++...|+..+++ +++||+|++..+++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMM 106 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGG
T ss_pred CCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeee
Confidence 4469999999999999999998 789999999999999988653 23568899999988775 45799999999999
Q ss_pred ccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE-cCccccc-cc
Q 022929 187 YWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR-IGPKWYR-GV 262 (290)
Q Consensus 187 ~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~-~~~~~~~-~~ 262 (290)
|++.. .++++++.++|+|||.+++............ ......++..++.+++ +||+++...+ ++..+.. .-
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~---~~~~~~~~~~el~~~~--~~~~i~~~~e~~~~~~~~~~~ 181 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCT---VGFPFAFKEGELRRYY--EGWDMLKYNEDVGELHRTDEN 181 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC------------CCCCBCTTHHHHHT--TTSEEEEEEEEECCC------
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCC---CCCCCccCHHHHHHHh--CCCeEEEeeeccceeeecCCC
Confidence 99765 4799999999999999998765432211111 1111234556777777 5898876543 3332221 12
Q ss_pred ccccceeeeEEEEecCC
Q 022929 263 RRHGLIMGCSVTGVKPA 279 (290)
Q Consensus 263 ~~~~~~~~~~~~a~k~~ 279 (290)
++........++|||++
T Consensus 182 ~~~~~~~~~~~varK~a 198 (198)
T d2i6ga1 182 GNRIKLRFATMLARKTA 198 (198)
T ss_dssp ------EEEEEEEECCC
T ss_pred CcEeeEEEEEEEEEeCC
Confidence 22222334468889874
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.82 E-value=3e-19 Score=150.55 Aligned_cols=154 Identities=20% Similarity=0.238 Sum_probs=117.3
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCCCCCCCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~~l~~~~~~ 175 (290)
.+++...+. ...+|||||||+|.++..+++.+|+.+++++|+ +++++.++++. ...++++..+|+.+ +.+. +
T Consensus 72 ~~~~~~d~~-~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~-~ 147 (256)
T d1qzza2 72 APADAYDWS-AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-T 147 (256)
T ss_dssp HHHHTSCCT-TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-C
T ss_pred HHHhcCCCc-cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cccc-c
Confidence 344444443 668999999999999999999999999999998 78888887653 23568999999876 4444 4
Q ss_pred ccEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCch-h----HhhhhH-----HHhhcCCCHHHHHHHHHH
Q 022929 176 ADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTF-W----LSRYFA-----DVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~-~----~~~~~~-----~~~~~~~~~~~~~~ll~~ 243 (290)
||+|++.+++|++++.+ ++|+++++.|||||+++|.+...... . ....++ ......+|.++|.+++++
T Consensus 148 ~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~ 227 (256)
T d1qzza2 148 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGS 227 (256)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHT
T ss_pred chhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHH
Confidence 99999999999998764 68999999999999999987643211 1 111111 011134689999999999
Q ss_pred CCCcEEEEEEcCcc
Q 022929 244 AGFKDVQLKRIGPK 257 (290)
Q Consensus 244 aGf~~v~~~~~~~~ 257 (290)
+||+++++...+..
T Consensus 228 AGf~~~~~~~~~~~ 241 (256)
T d1qzza2 228 AGLALASERTSGST 241 (256)
T ss_dssp TTEEEEEEEEECCS
T ss_pred CCCceeEEEEeCCc
Confidence 99999999887754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.2e-20 Score=157.92 Aligned_cols=175 Identities=20% Similarity=0.218 Sum_probs=142.0
Q ss_pred CCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEE
Q 022929 59 RPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVT 138 (290)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~ 138 (290)
.+.....+.+|..+..+||+....+...+++|++.++.+++.++.... ..+.+|||+|||+|.+++.++...|..+++
T Consensus 59 ~rr~~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~p~~~v~ 136 (274)
T d2b3ta1 59 TRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEII 136 (274)
T ss_dssp HHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEE
T ss_pred HHHhcCcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhhc--ccccceeeeehhhhHHHHHHHhhCCcceee
Confidence 333456788999999999999999999999999999999998887654 356899999999999999999999999999
Q ss_pred EEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecC-------------cccccCC------------
Q 022929 139 ILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAG-------------SIEYWPD------------ 190 (290)
Q Consensus 139 ~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~-------------~l~~~~~------------ 190 (290)
++|+|+.+++.|++|.. ..+++++.+|+.+ ++++.+||+|+|+- ++.+.|.
T Consensus 137 avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~ 215 (274)
T d2b3ta1 137 AVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMAD 215 (274)
T ss_dssp EECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHH
T ss_pred eccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchH
Confidence 99999999999998842 3479999999976 45566899999952 2223322
Q ss_pred HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 191 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
..++++++.++|+|||.+++..... ..+.+.+++++.||..+++..
T Consensus 216 ~~~i~~~a~~~L~~~G~l~lEig~~-----------------q~~~v~~~l~~~gf~~i~~~k 261 (274)
T d2b3ta1 216 IVHIIEQSRNALVSGGFLLLEHGWQ-----------------QGEAVRQAFILAGYHDVETCR 261 (274)
T ss_dssp HHHHHHHHGGGEEEEEEEEEECCSS-----------------CHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEECch-----------------HHHHHHHHHHHCCCCeEEEEE
Confidence 2368899999999999998863211 357788999999998665443
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4.3e-21 Score=161.79 Aligned_cols=166 Identities=13% Similarity=0.069 Sum_probs=116.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc-----------------------------
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC----------------------------- 159 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v----------------------------- 159 (290)
.++.+|||||||+|.++..++... ..+|+|+|+|+.+++.|+++....+.
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 367899999999999887776652 45899999999999999876432111
Q ss_pred ----eEEEcCC----CCCCCCCCCccEEEecCcccccC----CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH
Q 022929 160 ----KIVEGDA----EDLPFPTDYADRYVSAGSIEYWP----DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227 (290)
Q Consensus 160 ----~~~~~d~----~~l~~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 227 (290)
.....+. ...+++.++||+|++..+++|++ ++..+++++.++|||||.+++.+......... .....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~-~~~~~ 207 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV-GKREF 207 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE-TTEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee-ccccc
Confidence 1111222 22356778899999999999986 34579999999999999999987654322110 00111
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEcCcccccccccccceeeeEEEEecC
Q 022929 228 WMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKP 278 (290)
Q Consensus 228 ~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~k~ 278 (290)
...+++.+++.++|+++||++++++.....+........... .++|||.
T Consensus 208 ~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~--~v~arKk 256 (257)
T d2a14a1 208 SCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVC--CIVARKK 256 (257)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEE--EEEEEEC
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEE--EEEEEeC
Confidence 223568999999999999999999887766554433322222 4778764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=5.8e-20 Score=151.49 Aligned_cols=103 Identities=23% Similarity=0.236 Sum_probs=91.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..++.++..|+.++++++++||+|+|..+++|
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence 6789999999999999999987 7899999999999999987632 24578899999999999999999999999999
Q ss_pred cC--CHHHHHHHHHhccCCCCEEEEEccC
Q 022929 188 WP--DPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 188 ~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
++ +..++++++.++|||||.+++..+.
T Consensus 115 ~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 115 FEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 97 4567999999999999999887554
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.78 E-value=2.5e-18 Score=142.15 Aligned_cols=146 Identities=18% Similarity=0.131 Sum_probs=113.0
Q ss_pred cccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCC-CCCCCccEEE
Q 022929 103 EPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLP-FPTDYADRYV 180 (290)
Q Consensus 103 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~-~~~~~~D~i~ 180 (290)
+.+.+ +++.+|||+|||+|..+..+++..|+..|+|+|+|+.+++.++++.. ..++..+..|..... ..+..+|+++
T Consensus 68 ~~l~i-kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 68 KVMPI-KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CCCCC-CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred HhCCC-CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEE
Confidence 34444 48999999999999999999999888999999999999999988755 356778888886543 4455688888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
+...+++..+++.+++++.+.|||||.+++........... .... ..+++.+.|+++||++++..++.+
T Consensus 147 i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~-~~~~------~~~e~~~~L~~aGF~ive~idL~p 215 (230)
T d1g8sa_ 147 IYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK-DPKE------IFKEQKEILEAGGFKIVDEVDIEP 215 (230)
T ss_dssp EEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS-CHHH------HHHHHHHHHHHHTEEEEEEEECTT
T ss_pred eeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCC-CHHH------HHHHHHHHHHHcCCEEEEEecCCC
Confidence 88888888888899999999999999998875332110000 0000 236788999999999999988764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.6e-19 Score=150.00 Aligned_cols=144 Identities=20% Similarity=0.184 Sum_probs=103.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC-------------------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE------------------------------- 158 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------------------------------- 158 (290)
++.+|||||||+|.+....+... ..+|+|+|+|+.+++.++++.....
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 68899999999998765555443 4689999999999999987643211
Q ss_pred --ceEEEcCCCC------CCCCCCCccEEEecCcccccC----CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHH
Q 022929 159 --CKIVEGDAED------LPFPTDYADRYVSAGSIEYWP----DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226 (290)
Q Consensus 159 --v~~~~~d~~~------l~~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 226 (290)
......|+.. .+...++||+|++.+++++++ +..++++++.++|||||.|++.+........... ..
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~-~~ 211 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGE-AR 211 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETT-EE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCC-cc
Confidence 1233445532 224456799999999999985 3467999999999999999998765432211100 01
Q ss_pred HhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 227 VWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 227 ~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
....+++.+++.++|+++||++++++...
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v~~~~~~~ 240 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKVRDLRTYI 240 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 12235699999999999999998877653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5.9e-18 Score=140.18 Aligned_cols=150 Identities=11% Similarity=-0.036 Sum_probs=111.9
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------------------
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------------ 156 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------------ 156 (290)
..+.+.+.+.+.. .++.+|||+|||+|..+..|++. +.+|+|+|+|+.+++.|+++...
T Consensus 31 ~~l~~~~~~~l~~-~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 31 QLLKKHLDTFLKG-KSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp HHHHHHHHHHHTT-CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred HHHHHHHHHhcCC-CCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence 3344333333333 37889999999999999999998 88999999999999999876431
Q ss_pred --CCceEEEcCCCCCC-CCCCCccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcC
Q 022929 157 --KECKIVEGDAEDLP-FPTDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231 (290)
Q Consensus 157 --~~v~~~~~d~~~l~-~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 231 (290)
.+++++++|+.+++ ...+.||+|+...++++++. ...+++++.++|||||.+++........... . -...
T Consensus 108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~---g--pp~~ 182 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP---G--PPFY 182 (229)
T ss_dssp TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC---C--SSCC
T ss_pred cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC---C--CCCC
Confidence 35789999997764 55678999999999999953 4579999999999999988876554321110 0 0124
Q ss_pred CCHHHHHHHHHHCCCcEEEEEE
Q 022929 232 PKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 232 ~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
.+.+++.+++.. +|++..++.
T Consensus 183 ~~~~el~~lf~~-~~~i~~le~ 203 (229)
T d2bzga1 183 VPHAEIERLFGK-ICNIRCLEK 203 (229)
T ss_dssp CCHHHHHHHHTT-TEEEEEEEE
T ss_pred CCHHHHHHHhcC-CCEEEEEEE
Confidence 588999999965 787655544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.75 E-value=3.2e-18 Score=143.81 Aligned_cols=147 Identities=17% Similarity=0.102 Sum_probs=109.9
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCC-CCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPF-PTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~-~~~~~D~i~~~~ 183 (290)
+++++|||+|||+|..+..+++. +..+|+|+|+|+++++.|+++.. ..++.+.++|+...++ .+++||+|+|..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 37899999999999999999887 24689999999999999987632 2358899999976664 466799999999
Q ss_pred cccccCCH----HHHHHHHHhccCCCCEEEEEccCCCchhHhh----------------------------------hhH
Q 022929 184 SIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLSR----------------------------------YFA 225 (290)
Q Consensus 184 ~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----------------------------------~~~ 225 (290)
++||..+. ..+++++.++|||||.+++..+......... ...
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 181 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 181 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceEEEEEcccccc
Confidence 99998543 4689999999999999988654321110000 000
Q ss_pred HHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
+......+.+.+.++++++||+.++...+.+
T Consensus 182 ~~~E~l~~~~~l~~~~~~~g~~lv~~~~f~~ 212 (252)
T d1ri5a_ 182 NCIEYFVDFTRMVDGFKRLGLSLVERKGFID 212 (252)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEHHH
T ss_pred cCcccccCHHHHHHHHHHcCCEEEEEecHHH
Confidence 0000123578999999999999998877644
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=6e-18 Score=144.27 Aligned_cols=154 Identities=15% Similarity=0.141 Sum_probs=110.2
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhh----CCC--CeEEEEeCCHHHHHHHhhhCCC----CCceE--EEc
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH----VDA--KNVTILDQSPHQLAKAKQKEPL----KECKI--VEG 164 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~----~~~--~~v~~vD~s~~~~~~a~~~~~~----~~v~~--~~~ 164 (290)
....++..+...++..+|||||||+|.++..+++. +++ ..++|+|+|+.+++.++++... .++.+ ...
T Consensus 27 ~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 106 (280)
T d1jqea_ 27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKE 106 (280)
T ss_dssp THHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECS
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhh
Confidence 33344555544445568999999999987777554 333 4689999999999999887432 22333 333
Q ss_pred CCC------CCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH--------hhc
Q 022929 165 DAE------DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV--------WML 230 (290)
Q Consensus 165 d~~------~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~--------~~~ 230 (290)
+++ ..+.++++||+|++.++++|++++..+++++.++|+|||.+++........+. +.+... +..
T Consensus 107 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~-~l~~~~~~~~~~~~~~~ 185 (280)
T d1jqea_ 107 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD-KLWKKYGSRFPQDDLCQ 185 (280)
T ss_dssp CHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHH-HHHHHHGGGSCCCTTSC
T ss_pred hhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHH-HHHHHHHHhcCCCcccc
Confidence 332 12456778999999999999999999999999999999999988765544322 111111 223
Q ss_pred CCCHHHHHHHHHHCCCcEEEE
Q 022929 231 FPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 231 ~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+++.+++.++|.+.||..+..
T Consensus 186 ~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 186 YITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp CCCHHHHHHHHHHHTCCEEEE
T ss_pred cCCHHHHHHHHHHCCCceEEE
Confidence 568899999999999985443
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=8.5e-18 Score=142.47 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=90.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|.++..+++..++.+++|+|+|+.+++.|+++. .++.+.++|+.++|+++++||+|++..++++
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-- 159 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--PQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-- 159 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--TTSEEEECCTTSCSBCTTCEEEEEEESCCCC--
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc--ccccceeeehhhccCCCCCEEEEeecCCHHH--
Confidence 678999999999999999999988899999999999999999875 4789999999999999999999999888775
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCch
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTF 218 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 218 (290)
++++.++|||||.+++.++.....
T Consensus 160 -----~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 160 -----AEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp -----HHHHHHHEEEEEEEEEEEECTTTT
T ss_pred -----HHHHHHHhCCCcEEEEEeeCCcch
Confidence 578999999999999998766543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.73 E-value=2.1e-18 Score=138.95 Aligned_cols=144 Identities=9% Similarity=-0.016 Sum_probs=108.6
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---------------CCceEEEcCC
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------------KECKIVEGDA 166 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------~~v~~~~~d~ 166 (290)
+..+.. .++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.|+++... ..+.++.+|+
T Consensus 13 ~~~l~~-~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 89 (201)
T d1pjza_ 13 WSSLNV-VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF 89 (201)
T ss_dssp HHHHCC-CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred HHHcCC-CCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence 333443 38899999999999999999998 89999999999999999987432 3457888898
Q ss_pred CCCC-CCCCCccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 167 EDLP-FPTDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 167 ~~l~-~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
.+++ .....||+|++..++++++. ....++++.++|||||.+++............ .....+.+++.++++
T Consensus 90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~-----p~~~~~~~el~~l~~- 163 (201)
T d1pjza_ 90 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEG-----PPFSVPQTWLHRVMS- 163 (201)
T ss_dssp SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSS-----CCCCCCHHHHHHTSC-
T ss_pred cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCC-----ccccCCHHHHHHHhC-
Confidence 8775 33457999999999999975 45799999999999999888755443221110 011346788888775
Q ss_pred CCCcEEEEEEc
Q 022929 244 AGFKDVQLKRI 254 (290)
Q Consensus 244 aGf~~v~~~~~ 254 (290)
.+|++..++..
T Consensus 164 ~~~~i~~~~~~ 174 (201)
T d1pjza_ 164 GNWEVTKVGGQ 174 (201)
T ss_dssp SSEEEEEEEES
T ss_pred CCcEEEEEEEe
Confidence 58877666554
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.71 E-value=3.7e-17 Score=136.20 Aligned_cols=131 Identities=18% Similarity=0.307 Sum_probs=103.1
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCCCCCCCCCC
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~~l~~~~~~ 175 (290)
++..+... ++.+|||+|||+|.++..+++.. +..+|+++|.++++++.|+++. ...++++..+|+.+. +++..
T Consensus 77 Ii~~l~i~-pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~ 154 (250)
T d1yb2a1 77 IIMRCGLR-PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM 154 (250)
T ss_dssp ----CCCC-TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred HHHHcCCC-CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence 34555554 89999999999999999999874 5689999999999999999874 235799999999874 45677
Q ss_pred ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
||.|++ +++++..+++++.++|||||.+++..++.. ..+...+.|+++||..+++.+.
T Consensus 155 fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~----------------Qv~~~~~~l~~~gf~~i~~~E~ 212 (250)
T d1yb2a1 155 YDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD----------------QSEKTVLSLSASGMHHLETVEL 212 (250)
T ss_dssp EEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH----------------HHHHHHHHSGGGTEEEEEEEEE
T ss_pred eeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCcC----------------hHHHHHHHHHHCCCceeEEEEE
Confidence 999986 467888899999999999999988655321 1355667788899987776554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=6.7e-18 Score=141.37 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=99.5
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++++|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|...+ +++++++|+.+ .++.++||+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc
Confidence 38899999999999999988876 679999999999999999875433 46788888765 34566899999875443
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
. ...+++.+.++|||||++++++.... ..+++.+.++++||++++....+
T Consensus 196 ~---l~~l~~~~~~~LkpGG~lilSgil~~----------------~~~~v~~~~~~~Gf~~~~~~~~~ 245 (254)
T d2nxca1 196 L---HAALAPRYREALVPGGRALLTGILKD----------------RAPLVREAMAGAGFRPLEEAAEG 245 (254)
T ss_dssp H---HHHHHHHHHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHHTTCEEEEEEEET
T ss_pred c---HHHHHHHHHHhcCCCcEEEEEecchh----------------hHHHHHHHHHHCCCEEEEEEEEC
Confidence 2 45688999999999999998753211 35788899999999988876644
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.70 E-value=4e-17 Score=130.80 Aligned_cols=138 Identities=25% Similarity=0.308 Sum_probs=109.9
Q ss_pred CCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEc
Q 022929 89 NPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEG 164 (290)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~ 164 (290)
.|++..++++..++..+... ++.+|||||||+|.++..+++. ..+|+++|+++++++.|+++.. ..+++++++
T Consensus 13 ~~~~t~~eir~~il~~l~~~-~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g 89 (186)
T d1l3ia_ 13 VPGPTAMEVRCLIMCLAEPG-KNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG 89 (186)
T ss_dssp SCCCCCHHHHHHHHHHHCCC-TTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred CCCCChHHHHHHHHHhcCCC-CCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC
Confidence 34566788888888887664 8999999999999999999887 5799999999999999998742 257899999
Q ss_pred CCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHC
Q 022929 165 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA 244 (290)
Q Consensus 165 d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 244 (290)
|+.+.......||+|++....+ +...+++.+.+.|||||++++...... +...+.+.+++.
T Consensus 90 da~~~~~~~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~~e----------------~~~~~~~~l~~~ 150 (186)
T d1l3ia_ 90 DAPEALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILLE----------------TKFEAMECLRDL 150 (186)
T ss_dssp CHHHHHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH----------------HHHHHHHHHHHT
T ss_pred chhhcccccCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEeeccc----------------cHHHHHHHHHHc
Confidence 9877666667899999886554 456799999999999999987643221 234566778888
Q ss_pred CCcE
Q 022929 245 GFKD 248 (290)
Q Consensus 245 Gf~~ 248 (290)
||..
T Consensus 151 ~~~~ 154 (186)
T d1l3ia_ 151 GFDV 154 (186)
T ss_dssp TCCC
T ss_pred CCCe
Confidence 8853
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.69 E-value=4.8e-17 Score=135.49 Aligned_cols=147 Identities=23% Similarity=0.263 Sum_probs=110.7
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEE
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
.+++.........+|||||||+|.++..+++++|+.+++..|+ ++.++.+ ....+++++.+|+.+ +.+. .|++
T Consensus 71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~---~~~~ri~~~~gd~~~-~~p~--~D~~ 143 (244)
T d1fp1d2 71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA---PPLSGIEHVGGDMFA-SVPQ--GDAM 143 (244)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC---CCCTTEEEEECCTTT-CCCC--EEEE
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc---CCCCCeEEecCCccc-cccc--ceEE
Confidence 3444444223568999999999999999999999999999999 6665433 234689999999975 4443 6999
Q ss_pred EecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCc----hhHh---hhhHH-----HhhcCCCHHHHHHHHHHCC
Q 022929 180 VSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPT----FWLS---RYFAD-----VWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 180 ~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~---~~~~~-----~~~~~~~~~~~~~ll~~aG 245 (290)
++.+++|++++.+ ++|+++++.|+|||.+++.+...+. .... ..++. ....-+|.++|.++|+++|
T Consensus 144 ~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AG 223 (244)
T d1fp1d2 144 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSG 223 (244)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTT
T ss_pred EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcC
Confidence 9999999998865 7999999999999999998764321 1111 11111 1112358999999999999
Q ss_pred CcEEEEEE
Q 022929 246 FKDVQLKR 253 (290)
Q Consensus 246 f~~v~~~~ 253 (290)
|+.+++..
T Consensus 224 F~~v~v~~ 231 (244)
T d1fp1d2 224 FSKFQVAC 231 (244)
T ss_dssp CSEEEEEE
T ss_pred CCceEEEe
Confidence 99998864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.69 E-value=1.3e-16 Score=129.83 Aligned_cols=141 Identities=14% Similarity=0.004 Sum_probs=99.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCCCccEEE-ecCccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYADRYV-SAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~~~D~i~-~~~~l~ 186 (290)
+|+.+|||+|||+|..+..+++..|..+|+|+|+|+.+++.++++.. ..++.++..|....+.....+|.+. +...+.
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~ 134 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIA 134 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEeccc
Confidence 48999999999999999999999888899999999999999987643 3589999999877543333333332 223456
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
+..+...+++++.++|||||.+++........... .... ..++....+ ++||++++...+.+.
T Consensus 135 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~-~~~~------~~~~~~~~l-~~gf~i~E~i~L~P~ 197 (209)
T d1nt2a_ 135 QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTA-EPEE------VFKSVLKEM-EGDFKIVKHGSLMPY 197 (209)
T ss_dssp STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTS-CHHH------HHHHHHHHH-HTTSEEEEEEECTTT
T ss_pred ChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCC-CHHH------HHHHHHHHH-HcCCEEEEEEccCCC
Confidence 66677889999999999999998875321000000 0000 012233334 379999998887653
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=2.4e-16 Score=132.12 Aligned_cols=135 Identities=19% Similarity=0.258 Sum_probs=107.1
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC------CCCceEEEcCCCCCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLP 170 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~l~ 170 (290)
...++..+... ++.+|||+|||+|.++..+++.. |..+|+++|+++++++.|+++.. ..++.+.++|+.+.+
T Consensus 85 ~s~Ii~~l~i~-PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 85 AAQIVHEGDIF-PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHhCCC-CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 33445555553 89999999999999999999884 67899999999999999998632 358999999998888
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHH-HHCCCcEE
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWF-QKAGFKDV 249 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~aGf~~v 249 (290)
+++++||.|++ ++++|...+.++.++|||||.+++..++... .....+.+ ++.||..+
T Consensus 164 ~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Q----------------v~~~~~~l~~~~~f~~i 222 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ----------------LSRIVEALRAKQCWTEP 222 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHH----------------HHHHHHHHHHHSSBCCC
T ss_pred ccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCccCh----------------HHHHHHHHHHcCCeecc
Confidence 88899999985 6789999999999999999999887655421 23334444 46689766
Q ss_pred EEEEc
Q 022929 250 QLKRI 254 (290)
Q Consensus 250 ~~~~~ 254 (290)
++.++
T Consensus 223 ~~~E~ 227 (264)
T d1i9ga_ 223 RAWET 227 (264)
T ss_dssp EEECC
T ss_pred eEEEE
Confidence 66544
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=8.5e-18 Score=139.24 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=98.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCC--CCCCCCCccEEE-----
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAED--LPFPTDYADRYV----- 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~--l~~~~~~~D~i~----- 180 (290)
++.+|||||||+|..+..+++.. ..+++++|+|+.+++.|+++... .++.++..|... .++++++||.|+
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 78899999999999999998874 46899999999999999987543 345666666533 246677899987
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+...++|+.++..+++++.++|||||.+++.+.................. ..+.+...|.++||+..+++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~agF~~~~i~~ 202 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIM--FEETQVPALLEAGFRRENIRT 202 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHH--HHHHTHHHHHHTTCCGGGEEE
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchh--hhhHHHHHHHHCCCeeEEEEE
Confidence 46677788888899999999999999998743211100000000000000 134566778889997655543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.65 E-value=5.5e-16 Score=129.04 Aligned_cols=139 Identities=25% Similarity=0.330 Sum_probs=107.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
...+|||||||+|.++..+++++|+.+++..|+ ++.++.+. ...+++++.+|+.+ +.+ .+|++++.+++|+++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~ 152 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS---GSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWT 152 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC---CBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSC
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc---ccCceEEEecCccc-CCC--CCcEEEEEeecccCC
Confidence 457899999999999999999999999999999 66665443 34689999999976 333 489999999999999
Q ss_pred CHH--HHHHHHHhccCCC---CEEEEEccCCCchh------HhhhhHHHh-----hcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 190 DPQ--RGIREAYRVLKLG---GKACIIGPVYPTFW------LSRYFADVW-----MLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 190 ~~~--~~l~~~~~~L~pg---G~l~i~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+.+ ++|+++++.|+|| |++++.+...+... ......+.. ...+|.++|.++|+++||+.+++..
T Consensus 153 d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~~ 232 (244)
T d1fp2a2 153 DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 232 (244)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred hHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEEE
Confidence 875 7999999999998 77888765432211 111111111 1236899999999999999999876
Q ss_pred cC
Q 022929 254 IG 255 (290)
Q Consensus 254 ~~ 255 (290)
.+
T Consensus 233 ~~ 234 (244)
T d1fp2a2 233 LT 234 (244)
T ss_dssp EE
T ss_pred CC
Confidence 54
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=2.2e-16 Score=135.26 Aligned_cols=100 Identities=24% Similarity=0.256 Sum_probs=77.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC-------CceEEEcCCCC----CCCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------ECKIVEGDAED----LPFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~v~~~~~d~~~----l~~~~~~~D~ 178 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.... +..+...++.. ++. .++||+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~ 132 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDA 132 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCceE
Confidence 5689999999999999999988 789999999999999998763211 22344444422 233 346999
Q ss_pred EEec-CcccccCC-------HHHHHHHHHhccCCCCEEEEEc
Q 022929 179 YVSA-GSIEYWPD-------PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 179 i~~~-~~l~~~~~-------~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
|+|. ++++|+++ ...+++++.++|||||.+++..
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 9975 58888865 3469999999999999998854
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=7.6e-16 Score=129.64 Aligned_cols=134 Identities=18% Similarity=0.224 Sum_probs=105.6
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~ 172 (290)
...++..+... ++.+|||+|||+|.++..+++.. |..+|+++|+++++++.|+++.. ..++.+...|+.. .+.
T Consensus 92 ~~~Ii~~l~i~-pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~ 169 (266)
T d1o54a_ 92 SSFIAMMLDVK-EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFD 169 (266)
T ss_dssp HHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCS
T ss_pred HHHHHHhhCCC-CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-ccc
Confidence 33455555554 89999999999999999999875 56899999999999999998743 2457777777644 345
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
...+|.|+. +++++..+++++.++|||||.+++..+... ..++..+.|++.||..+++.
T Consensus 170 ~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~----------------Qv~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 170 EKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTN----------------QVQETLKKLQELPFIRIEVW 228 (266)
T ss_dssp CCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHSSEEEEEEE
T ss_pred ccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCccc----------------HHHHHHHHHHHCCceeEEEE
Confidence 566898864 678999999999999999999998765421 23567788899999888876
Q ss_pred Ec
Q 022929 253 RI 254 (290)
Q Consensus 253 ~~ 254 (290)
+.
T Consensus 229 E~ 230 (266)
T d1o54a_ 229 ES 230 (266)
T ss_dssp CC
T ss_pred EE
Confidence 64
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=6.4e-16 Score=124.46 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=85.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-----CCCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
++.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++. ...++++..+|+.+ ++++++||+|+++.+
T Consensus 52 ~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p 128 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP 128 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC
T ss_pred CCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEccc
Confidence 7899999999999999999987 568999999999999998763 22358899999977 566778999999988
Q ss_pred ccccCCH-HHHHHHHHhccCCCCEEEEEcc
Q 022929 185 IEYWPDP-QRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 185 l~~~~~~-~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+++..+. +.+++++.++|+|||.+++...
T Consensus 129 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 129 IRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp STTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 8766553 6789999999999999987643
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=1.8e-15 Score=122.36 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=88.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCC--CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~--~~~~~~D~i~~~~~ 184 (290)
+...|||||||+|..+..+++..|+..++|+|+++.++..|.++ ....|+.++.+|+..+. ++++++|.|++.+.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 45689999999999999999999999999999999999988765 34468999999997664 77888999998877
Q ss_pred ccccCCH--------HHHHHHHHhccCCCCEEEEEc
Q 022929 185 IEYWPDP--------QRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 185 l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~ 212 (290)
..|.... ..+++.+.++|||||.|++.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7665443 379999999999999999875
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=7.3e-15 Score=120.63 Aligned_cols=152 Identities=15% Similarity=0.047 Sum_probs=104.8
Q ss_pred HHHHHhhc---cccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCC
Q 022929 95 EDMRDDAL---EPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDL 169 (290)
Q Consensus 95 ~~~~~~~l---~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l 169 (290)
..+...++ +.+.. ++|.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.++++.. ..++..+..|....
T Consensus 56 SKlaa~i~~~l~~l~i-~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~ 134 (227)
T d1g8aa_ 56 SKLGAAIMNGLKNFPI-KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKP 134 (227)
T ss_dssp CHHHHHHHTTCCCCCC-CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCG
T ss_pred cHHHHHHHcccccccc-CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCc
Confidence 34444443 34444 489999999999999999999986 56899999999999999988754 34677788887542
Q ss_pred ---CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC
Q 022929 170 ---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 170 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 246 (290)
+.....+|+|++ .+.+..+...+++++.+.|||||.+++......... ....... ..++..+ .+.||
T Consensus 135 ~~~~~~~~~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~-~~~~~~v------~~~v~~l-~~~gf 204 (227)
T d1g8aa_ 135 EEYRALVPKVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDV-TKEPEQV------FREVERE-LSEYF 204 (227)
T ss_dssp GGGTTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCT-TSCHHHH------HHHHHHH-HHTTS
T ss_pred ccccccccceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCccCC-CCCHHHH------HHHHHHH-HHcCC
Confidence 233456888876 344556677899999999999999988643211000 0000000 1233344 45699
Q ss_pred cEEEEEEcCcc
Q 022929 247 KDVQLKRIGPK 257 (290)
Q Consensus 247 ~~v~~~~~~~~ 257 (290)
++++..++.+.
T Consensus 205 ~iie~i~L~p~ 215 (227)
T d1g8aa_ 205 EVIERLNLEPY 215 (227)
T ss_dssp EEEEEEECTTT
T ss_pred EEEEEEcCCCC
Confidence 99998887653
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.61 E-value=6.4e-16 Score=128.79 Aligned_cols=150 Identities=23% Similarity=0.262 Sum_probs=109.7
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccE
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR 178 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~ 178 (290)
..++..........+|||||||+|.++..+++++|+.+++++|+ +..++.++ ...+++++.+|+.+ +.+. .|+
T Consensus 70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---~~~r~~~~~~d~~~-~~P~--ad~ 142 (243)
T d1kyza2 70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDL-PHVIEDAP---SYPGVEHVGGDMFV-SIPK--ADA 142 (243)
T ss_dssp HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-TTTTTTCC---CCTTEEEEECCTTT-CCCC--CSC
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEccc-HHhhhhcc---cCCceEEecccccc-cCCC--cce
Confidence 34444444333467999999999999999999999999999999 44443332 34679999999965 4443 688
Q ss_pred EEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCc------hhHhhhhHHHh-------hcCCCHHHHHHHHHH
Q 022929 179 YVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPT------FWLSRYFADVW-------MLFPKEEEYIEWFQK 243 (290)
Q Consensus 179 i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~------~~~~~~~~~~~-------~~~~~~~~~~~ll~~ 243 (290)
++..+++|.+++.+ .+|+++++.|+|||.+++.+...+. ........+.. ...++.++|.++|++
T Consensus 143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~ 222 (243)
T d1kyza2 143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKG 222 (243)
T ss_dssp EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHH
T ss_pred EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHH
Confidence 89999999998754 7999999999999999998654221 11111111111 123578999999999
Q ss_pred CCCcEEEEEEcC
Q 022929 244 AGFKDVQLKRIG 255 (290)
Q Consensus 244 aGf~~v~~~~~~ 255 (290)
+||+.+++....
T Consensus 223 AGf~~vkv~~~~ 234 (243)
T d1kyza2 223 AGFQGFKVHCNA 234 (243)
T ss_dssp HCCSCEEEEEEE
T ss_pred cCCCcEEEEEeC
Confidence 999999987654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=3.6e-15 Score=121.65 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=89.8
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~ 171 (290)
.+...+++.+... ++++|||||||+|..+..+++.. +..+|+++|+++++++.|+++. ...++.++.+|..+...
T Consensus 62 ~~~a~~l~~l~l~-~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 62 SLMALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred hhhHHHHHhhhcc-ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc
Confidence 4455666666654 89999999999999999998875 4579999999999999999874 34678889999877666
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+++||+|++..++++.++ .+.+.|||||++++.
T Consensus 141 ~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp GGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEE
T ss_pred cccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEE
Confidence 6778999999999988763 467789999999874
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.57 E-value=2.9e-14 Score=115.15 Aligned_cols=104 Identities=23% Similarity=0.192 Sum_probs=86.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCC--CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~--~~~~~~D~i~~~~~ 184 (290)
....|||||||+|.++..+|+.+|+..++|+|+++.++..|.++ ....|+.++.+|+..+. +++.++|.|++.+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 45689999999999999999999999999999999999888664 23468999999997764 67788999987665
Q ss_pred ccccCCH--------HHHHHHHHhccCCCCEEEEEcc
Q 022929 185 IEYWPDP--------QRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 185 l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-.|.... ..+++.+.++|||||.+++.+.
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD 147 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 147 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 4443322 4799999999999999998764
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.5e-15 Score=129.60 Aligned_cols=120 Identities=16% Similarity=0.268 Sum_probs=96.8
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC------------CCCCce
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------PLKECK 160 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------------~~~~v~ 160 (290)
........+++.+... ++++|||||||+|.++..+++..+..+++|+|+|+.+++.|+++. ...+++
T Consensus 135 ~~~~~~~~~~~~~~l~-~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~ 213 (328)
T d1nw3a_ 135 TSFDLVAQMIDEIKMT-DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 213 (328)
T ss_dssp CCHHHHHHHHHHSCCC-TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred hHHHHHHHHHHHcCCC-CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence 3455667778877764 889999999999999999999887789999999999999987642 235799
Q ss_pred EEEcCCCCCCCCCCC--ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 161 IVEGDAEDLPFPTDY--ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 161 ~~~~d~~~l~~~~~~--~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
++++|+.+.++.+.. +|+|+++ .+.+.++....+.++.+.|||||.++.....
T Consensus 214 ~~~gd~~~~~~~~~~~~advi~~~-~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 214 LERGDFLSEEWRERIANTSVIFVN-NFAFGPEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp EEECCTTSHHHHHHHHHCSEEEEC-CTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred EEECcccccccccccCcceEEEEc-ceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 999999887765543 4677765 4556778888999999999999999876543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=4.5e-15 Score=124.71 Aligned_cols=165 Identities=16% Similarity=0.052 Sum_probs=123.3
Q ss_pred chhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeC
Q 022929 63 QPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142 (290)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~ 142 (290)
..++.+|+.+..+||+....+...+++|++.++.+++.++...... +..+|+|+|||+|..+..+++. |..+|+++|+
T Consensus 64 ~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~-~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Di 141 (271)
T d1nv8a_ 64 SGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY-GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDV 141 (271)
T ss_dssp TTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH-TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEES
T ss_pred CCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccc-cccEEEEeeeeeehhhhhhhhc-ccceeeechh
Confidence 4568899999999999999999999999999999999888765443 4578999999999999998865 7899999999
Q ss_pred CHHHHHHHhhhCCC----CCceEEEcCCCCC-CCCCCCccEEEecC-----------cccccCCH--------HHHH-HH
Q 022929 143 SPHQLAKAKQKEPL----KECKIVEGDAEDL-PFPTDYADRYVSAG-----------SIEYWPDP--------QRGI-RE 197 (290)
Q Consensus 143 s~~~~~~a~~~~~~----~~v~~~~~d~~~l-~~~~~~~D~i~~~~-----------~l~~~~~~--------~~~l-~~ 197 (290)
|+.+++.|++|... .++.+..+|+.+. +...++||+|+|+- ...|.|.. -.++ +-
T Consensus 142 s~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i 221 (271)
T d1nv8a_ 142 SSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF 221 (271)
T ss_dssp CHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH
Confidence 99999999988432 3466778888653 22335799999951 11122211 0222 22
Q ss_pred HHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC
Q 022929 198 AYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 198 ~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 246 (290)
+.++|+|||.+++..... ..+.+.+++++.||
T Consensus 222 ~~~~L~~~G~l~~Eig~~-----------------Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 222 FGRYDTSGKIVLMEIGED-----------------QVEELKKIVSDTVF 253 (271)
T ss_dssp HHHCCCTTCEEEEECCTT-----------------CHHHHTTTSTTCEE
T ss_pred HHHhcCCCCEEEEEECHH-----------------HHHHHHHHHHhCCE
Confidence 567899999988864321 24567777778887
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.1e-14 Score=125.58 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=99.7
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC--------------CCCceEEE
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------------LKECKIVE 163 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~--------------~~~v~~~~ 163 (290)
..++..+... ++.+|||+|||+|.++..+++.. |..+|+++|+++++++.|+++.. ..++++..
T Consensus 88 ~~Il~~l~i~-pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 88 NMILSMMDIN-PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhCCC-CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 3445555554 89999999999999999999874 56899999999999999997632 25789999
Q ss_pred cCCCCCC--CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHH
Q 022929 164 GDAEDLP--FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWF 241 (290)
Q Consensus 164 ~d~~~l~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 241 (290)
.|+.+.. +.+..||.|+. .+++|..++.++.++|||||.+++-.++.. ......+.|
T Consensus 167 ~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~----------------Qv~~~~~~l 225 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNIT----------------QVIELLDGI 225 (324)
T ss_dssp SCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSHH----------------HHHHHHHHH
T ss_pred cchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCHH----------------HHHHHHHHH
Confidence 9997653 45567999986 457777899999999999999988654321 123445556
Q ss_pred HHC--CCcEEEEEEcC
Q 022929 242 QKA--GFKDVQLKRIG 255 (290)
Q Consensus 242 ~~a--Gf~~v~~~~~~ 255 (290)
++. ||..+++.++.
T Consensus 226 ~~~~~~f~~i~~~E~~ 241 (324)
T d2b25a1 226 RTCELALSCEKISEVI 241 (324)
T ss_dssp HHHTCCEEEEEEECCC
T ss_pred HHcCCCceeeEEEEEE
Confidence 644 67777766553
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.9e-14 Score=122.95 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=91.0
Q ss_pred hcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh---hhCCCCCceE
Q 022929 85 DHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKECKI 161 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~---~~~~~~~v~~ 161 (290)
..++.+...++.+.+.+....... ++++|||||||+|.++..+++. +..+|+++|.|+.+...++ ++....++.+
T Consensus 11 ~~ml~D~~r~~~y~~ai~~~~~~~-~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~ 88 (311)
T d2fyta1 11 EEMLKDKIRTESYRDFIYQNPHIF-KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITL 88 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHCGGGT-TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEE
T ss_pred HHHhCCHHHHHHHHHHHHhccccC-CcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHHHHHHHHHhCCCccceE
Confidence 334444433444544444433333 7899999999999999998887 3468999999998764333 2333467999
Q ss_pred EEcCCCCCCCCCCCccEEEecCcccccCC---HHHHHHHHHhccCCCCEEEE
Q 022929 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPD---PQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 162 ~~~d~~~l~~~~~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i 210 (290)
+.+|+.+++++..+||+|++....++... .+.++....++|+|||.++.
T Consensus 89 ~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 89 IKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99999999888888999999776665543 45778888899999999864
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=3.3e-14 Score=122.82 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHH---HhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK---AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~---a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++++|||||||+|.++..+++. +..+|+++|.|+.+... ++.+....++.++.+|+.+++++.++||+|++..+.+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 7899999999999999988886 34689999999754332 2223334679999999999998888999999976665
Q ss_pred cc---CCHHHHHHHHHhccCCCCEEEE
Q 022929 187 YW---PDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 187 ~~---~~~~~~l~~~~~~L~pgG~l~i 210 (290)
++ ...+.++..+.++|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 54 4567899999999999999863
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.6e-14 Score=117.33 Aligned_cols=109 Identities=20% Similarity=0.168 Sum_probs=86.9
Q ss_pred HHHhhccccC-CCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC--------CCCceEEEcCC
Q 022929 97 MRDDALEPAD-LSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDA 166 (290)
Q Consensus 97 ~~~~~l~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~--------~~~v~~~~~d~ 166 (290)
+...+++.+. ..+++.+|||||||+|..+..+++.. +..+|+++|+++++++.|+++.. ..++.+..+|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 3334444431 22489999999999999998888864 46799999999999999987643 24688899999
Q ss_pred CCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 167 ~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
...+..+++||+|++..++++++ +.+.+.|||||++++.
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILP 180 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred ccccchhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEE
Confidence 87776777899999999998776 3577899999999884
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.48 E-value=7.7e-14 Score=114.04 Aligned_cols=106 Identities=21% Similarity=0.197 Sum_probs=86.1
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~~ 175 (290)
+...+++.+... ++.+|||||||+|..+..+++. ..+|+++|+++++++.|+++.. ..++.++.+|........++
T Consensus 58 ~~a~ml~~L~l~-~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~p 134 (224)
T d1vbfa_ 58 LGIFMLDELDLH-KGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (224)
T ss_dssp HHHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred hHHHHHHHhhhc-ccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhh
Confidence 344456666554 8999999999999999999888 5799999999999999998743 46899999998654445577
Q ss_pred ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
||+|++...+.+++ ..+.+.|+|||+|++.
T Consensus 135 fD~Iiv~~a~~~ip------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 135 YDRVVVWATAPTLL------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred HHHHHhhcchhhhh------HHHHHhcCCCCEEEEE
Confidence 99999998888776 3466789999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=5.2e-14 Score=122.22 Aligned_cols=98 Identities=26% Similarity=0.277 Sum_probs=79.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----CCCCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++++|||||||+|.++..+++. +..+|+++|.|+ ++..|++. ....++.++.+|+.++++++.+||+|++..+.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 7899999999999999888876 346999999986 44455433 33457899999999999888899999997665
Q ss_pred ccc---CCHHHHHHHHHhccCCCCEEE
Q 022929 186 EYW---PDPQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 186 ~~~---~~~~~~l~~~~~~L~pgG~l~ 209 (290)
+++ .....++..+.++|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 544 456789999999999999885
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=8.8e-12 Score=103.59 Aligned_cols=165 Identities=11% Similarity=-0.076 Sum_probs=107.4
Q ss_pred HHHHhHHhHhhhcccCCCcccHH----HHHhhccccC-CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHH
Q 022929 74 FWFYRFLSIVYDHVINPGHWTED----MRDDALEPAD-LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA 148 (290)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~ 148 (290)
.+||+.-..+....+.|+..++. +...++.... ...+..++||+|||+|.++..++...|+++++|+|+|+++++
T Consensus 20 ~~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~ 99 (250)
T d2h00a1 20 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFN 99 (250)
T ss_dssp HHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred HHHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHH
Confidence 46788777788889999855433 2333333222 122456999999999999999999999999999999999999
Q ss_pred HHhhhCCC----CCceEEEcCCCCC------CCCCCCccEEEecCcccccCCH---------------------------
Q 022929 149 KAKQKEPL----KECKIVEGDAEDL------PFPTDYADRYVSAGSIEYWPDP--------------------------- 191 (290)
Q Consensus 149 ~a~~~~~~----~~v~~~~~d~~~l------~~~~~~~D~i~~~~~l~~~~~~--------------------------- 191 (290)
.|+++... .++.++..+.... ...+++||+|+|+--.....+.
T Consensus 100 ~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~ 179 (250)
T d2h00a1 100 YAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMA 179 (250)
T ss_dssp HHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHH
T ss_pred HHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCcccccccc
Confidence 99988432 3466666554321 1234579999996544322111
Q ss_pred --------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 192 --------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 192 --------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.+++++...+++..|.+..... ...+.+++.++|++.|+..+++.++
T Consensus 180 ~gGe~~F~~~ii~es~~~~~~~g~~t~~ig----------------~~~~l~~i~~~L~~~g~~~i~~ie~ 234 (250)
T d2h00a1 180 EGGELEFVKRIIHDSLQLKKRLRWYSCMLG----------------KKCSLAPLKEELRIQGVPKVTYTEF 234 (250)
T ss_dssp HHTHHHHHHHHHHHHHHHGGGBSCEEEEES----------------STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ccchhhHHHHHHHHHHHHhhcCcEEEEEec----------------chhhHHHHHHHHHHcCCCeEEEEEe
Confidence 1233333344444444422111 1125688999999999987777665
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=4.8e-13 Score=118.10 Aligned_cols=119 Identities=11% Similarity=0.095 Sum_probs=89.3
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC------------CCCceE
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------LKECKI 161 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------------~~~v~~ 161 (290)
...+..++++.+.+. ++++|||||||+|..+..++...+..+++|+|+|+.+++.|+++.. ...+.+
T Consensus 201 ~~~~i~~Il~~l~Lk-pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~ 279 (406)
T d1u2za_ 201 LPNFLSDVYQQCQLK-KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279 (406)
T ss_dssp CHHHHHHHHHHTTCC-TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred CHHHHHHHHHHhCCC-CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence 456777888888775 8999999999999999999999877799999999999999987532 112233
Q ss_pred -EEcCCCCCCC---CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 162 -VEGDAEDLPF---PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 162 -~~~d~~~l~~---~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
..++....+. .-..+|+|++++ .++.++....+.++.+.|||||+++..+..
T Consensus 280 ~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 280 SLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred eeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 3344433221 112478888765 456777889999999999999999886543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.34 E-value=1.5e-12 Score=105.65 Aligned_cols=108 Identities=26% Similarity=0.340 Sum_probs=88.1
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFP 172 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~ 172 (290)
.+...+++.+... ++.+|||||||+|..+..+++.. +.+|+++|.+++.++.|+++. ...|+.++++|.......
T Consensus 65 ~~~a~ml~~L~l~-~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 65 HMVAIMLEIANLK-PGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP 142 (215)
T ss_dssp HHHHHHHHHHTCC-TTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred hhHHHHHHhhccC-ccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcc
Confidence 3455666666654 89999999999999999998875 468999999999999998763 457899999999775555
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.++||.|++.....++++ .+...|+|||++++.
T Consensus 143 ~~pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp GCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred cCcceeEEeecccccCCH------HHHHhcCCCCEEEEE
Confidence 678999999998887763 366779999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.30 E-value=3.1e-12 Score=104.47 Aligned_cols=109 Identities=20% Similarity=0.233 Sum_probs=84.6
Q ss_pred HHHhhccccC-CCCCCCEEEEEcCccchhHHHHHhhC------CCCeEEEEeCCHHHHHHHhhhCC--------CCCceE
Q 022929 97 MRDDALEPAD-LSNRNMLVVDVGGGTGFTTLGIVKHV------DAKNVTILDQSPHQLAKAKQKEP--------LKECKI 161 (290)
Q Consensus 97 ~~~~~l~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~------~~~~v~~vD~s~~~~~~a~~~~~--------~~~v~~ 161 (290)
+...+++.+. ..+++.+|||||||+|..+..+++.. +..+|+++|.++++++.|+++.. ..++.+
T Consensus 66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~ 145 (223)
T d1r18a_ 66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 145 (223)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence 3334454441 22489999999999999988887763 23589999999999999987632 347899
Q ss_pred EEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 162 ~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
..+|..+...+.++||.|++...+.++++ .+.+.|||||++++.
T Consensus 146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 146 VEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVP 189 (223)
T ss_dssp EESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEE
T ss_pred EecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEE
Confidence 99999776556678999999999887763 567899999999774
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=1.3e-11 Score=102.95 Aligned_cols=127 Identities=19% Similarity=0.163 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.++.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.+++|.. .++++++++|+.+++. .+.||.|++...
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p 183 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 183 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence 37899999999999999999987 35799999999999999998743 3458999999988754 456999987532
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+....++..+.+.|++||.+.+-+....... .-...+.+.++..+.||++..+
T Consensus 184 ----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~----------~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 184 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM----------PREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT----------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred ----CchHHHHHHHHhhcCCCCEEEEEeccccccc----------hhhHHHHHHHHHHHcCCceEEE
Confidence 2334678889999999999866432211100 0113466778888999976544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.26 E-value=5.7e-12 Score=108.44 Aligned_cols=134 Identities=19% Similarity=0.096 Sum_probs=95.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC----CCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL----PFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l----~~~~~~~D~i~~~ 182 (290)
++++|||++||+|.++..++.. +.+|+++|+|+.+++.|+++.. ..+++++..|+.+. +...++||+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 6899999999999999998865 7899999999999999998743 34688999998552 3345679999985
Q ss_pred Ccccc---------cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 183 GSIEY---------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 183 ~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
---.. ..+..+++..+.++|+|||.|++.++...-. ...+ .+.+.+.+.++|-++..++.
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~-~~~f----------~~~v~~a~~~a~~~~~~~~~ 291 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-EPLF----------YAMVAEAAQDAHRLLRVVEK 291 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHH----------HHHHHHHHHHTTCCEEEEEE
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccC-HHHH----------HHHHHHHHHHcCCCEEEEEe
Confidence 32111 1123468889999999999998887654211 0000 12344566778876655555
Q ss_pred cCc
Q 022929 254 IGP 256 (290)
Q Consensus 254 ~~~ 256 (290)
.+.
T Consensus 292 ~~~ 294 (318)
T d1wxxa2 292 RGQ 294 (318)
T ss_dssp ECC
T ss_pred cCC
Confidence 543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.22 E-value=2.7e-11 Score=96.77 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=74.8
Q ss_pred CCCEEEEEcCccchh----HHHHHhhC----CCCeEEEEeCCHHHHHHHhhhC---------------------C-C---
Q 022929 110 RNMLVVDVGGGTGFT----TLGIVKHV----DAKNVTILDQSPHQLAKAKQKE---------------------P-L--- 156 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~----~~~l~~~~----~~~~v~~vD~s~~~~~~a~~~~---------------------~-~--- 156 (290)
+..+|+++|||+|.- +..+.+.. ...+++|+|+|+.+++.|++.. . .
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 557999999999983 33344331 1357999999999999998521 0 0
Q ss_pred ---------CCceEEEcCCCCC-CCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEE
Q 022929 157 ---------KECKIVEGDAEDL-PFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 157 ---------~~v~~~~~d~~~l-~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 211 (290)
..+.+...+.... +.+.++||+|+|.+++.+++.. +++++++.+.|+|||.|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1234555555432 2344679999999999999876 47999999999999998775
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.21 E-value=1.2e-11 Score=106.68 Aligned_cols=106 Identities=20% Similarity=0.068 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCC----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l----~~~~~~~D~i~ 180 (290)
+++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++|... .+++++++|+.+. +....+||+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 37899999999999999999877 346899999999999999988532 3578899998542 23456799999
Q ss_pred ecCccccc---------CCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 181 SAGSIEYW---------PDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 181 ~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+.--.... .++.+++..+.++|+|||.|++.++..
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 84322111 123468888999999999999887554
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.20 E-value=1.2e-11 Score=98.53 Aligned_cols=116 Identities=14% Similarity=0.169 Sum_probs=89.9
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC-----
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP----- 170 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~----- 170 (290)
...+++.+.. .++..+||++||+|.++..+++.+|+.+++|+|.++++++.|+++... .++.++++++.++.
T Consensus 12 l~evi~~l~~-~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 12 VREVIEFLKP-EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHHHCC-CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhhCC-CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 3344554444 388999999999999999999999999999999999999999988642 46889998886542
Q ss_pred CCCCCccEEEecCcccc---------cCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 171 FPTDYADRYVSAGSIEY---------WPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+..++||.|+....+.. +......+..+.++|+|||.+++.+..
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 44567999987544421 122347889999999999999988754
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.19 E-value=6.4e-11 Score=100.53 Aligned_cols=104 Identities=15% Similarity=0.090 Sum_probs=77.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCC----CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDL----PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l----~~~~~~~D~i~ 180 (290)
++.+|||++||+|.+++.++.. +.+|++||.|+.+++.|++|.. ..++++++.|+.+. .....+||+|+
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 6889999999999999999886 7799999999999999998742 23588999998543 12345799999
Q ss_pred ecCc---------ccccC-CHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 181 SAGS---------IEYWP-DPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 181 ~~~~---------l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+.-- ...+. +...+++.+..+|+|||.+++.+.+.
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 8311 11111 12357778889999999876665443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.17 E-value=3.5e-11 Score=95.85 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=59.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.|++|||+|||+|.++..++.. +..+|+++|+++.+++.|++|.. +++++++|+.+++ ++||+|+++--
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~~--~~~~~~~D~~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG--GVNFMVADVSEIS---GKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT--TSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHccc--cccEEEEehhhcC---CcceEEEeCcc
Confidence 6899999999999999887776 34689999999999999999875 7899999998754 46999999743
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.15 E-value=5.5e-11 Score=101.95 Aligned_cols=136 Identities=14% Similarity=0.065 Sum_probs=94.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCC----CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDL----PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l----~~~~~~~D~i~ 180 (290)
++.+|||++||+|.+++.++.. +..+|+++|+|+.+++.+++|.. ..+++++.+|+.+. .....+||+|+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 7899999999999999988775 34689999999999999998742 34688999998542 22345799999
Q ss_pred ecCc---------ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 181 SAGS---------IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 181 ~~~~---------l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+.-- ..-..+..++++.+.++|+|||.|+++++...-. ...+ .+.+.+.+.++|.++..+
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~-~~~f----------~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VSQF----------KKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHH----------HHHHHHHHTTCCCEEEEE
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC-HHHH----------HHHHHHHHHHcCCeEEEe
Confidence 8411 1111234578999999999999999987643211 1100 123345566678877766
Q ss_pred EEcCcc
Q 022929 252 KRIGPK 257 (290)
Q Consensus 252 ~~~~~~ 257 (290)
...++.
T Consensus 292 ~~~~~D 297 (317)
T d2b78a2 292 QQLPSD 297 (317)
T ss_dssp ECCCTT
T ss_pred ccCCCC
Confidence 655543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.15 E-value=1.4e-11 Score=94.62 Aligned_cols=102 Identities=12% Similarity=0.012 Sum_probs=75.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-CCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-PFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~~~~~~~D~i~~~~~ 184 (290)
.+.+|||+|||+|.+++.++.+ +..+|+++|.++.+++.++++.. .++++++++|+... ....++||+|++.--
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHh-CcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 6899999999999999998887 34699999999999999988743 24588899998552 344567999997522
Q ss_pred ccccCCHHHHHHHHH--hccCCCCEEEEEcc
Q 022929 185 IEYWPDPQRGIREAY--RVLKLGGKACIIGP 213 (290)
Q Consensus 185 l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~ 213 (290)
.. .......+..+. ++|+|+|.+++...
T Consensus 93 y~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 93 YA-KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp SH-HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hc-cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 11 112234556554 57999999988643
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=5e-10 Score=89.72 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=80.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
.|++|||+|||+|.++..++.. +..+|+|+|+++.+++.+++|.... +.+++..|+..+ +++||+|+++--...
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGS 121 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSS
T ss_pred CCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcccc
Confidence 6899999999999999988776 3469999999999999999986533 467888888664 346999998654432
Q ss_pred cCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 188 WPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 188 ~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
... ....+.. .+.+++.++........ ...-+..+..+.|+.+.....
T Consensus 122 ~~~~~d~~~l~~---~~~~~~~v~~ih~~~~~---------------~~~~i~~~~~~~g~~i~~~~~ 171 (201)
T d1wy7a1 122 QRKHADRPFLLK---AFEISDVVYSIHLAKPE---------------VRRFIEKFSWEHGFVVTHRLT 171 (201)
T ss_dssp SSTTTTHHHHHH---HHHHCSEEEEEEECCHH---------------HHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccccHHHHHH---HHhhcccchhcccchHH---------------HHHHHHHHHhhcCceEEEEEE
Confidence 221 1233333 33345555544322111 123345677788987655433
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.2e-10 Score=90.49 Aligned_cols=117 Identities=10% Similarity=0.021 Sum_probs=83.2
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCC-
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDL- 169 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l- 169 (290)
+..+++.+++.+...-.+.+|||++||+|.++..++.+ +..+|++||.++.+++.++++. ...++.++..|+.+.
T Consensus 27 ~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l 105 (183)
T d2fpoa1 27 TDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL 105 (183)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred cHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccc
Confidence 33444444443322126789999999999999998887 3468999999999999999873 345678888887542
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHh--ccCCCCEEEEEc
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYR--VLKLGGKACIIG 212 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~~ 212 (290)
.....+||+|++.--.. .......+..+.+ +|+++|.+++..
T Consensus 106 ~~~~~~fDlIf~DPPY~-~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 106 AQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp SSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccccccCEEEEcCccc-cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 33456799999864322 2334566776654 699999998864
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.01 E-value=1e-10 Score=91.39 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=69.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC--ceEEEcCCCC----CCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAED----LPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--v~~~~~d~~~----l~~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|.+++.++.+ +.+++++|.|+.+++.++++....+ .++...+... ......+||+|++.-
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 6889999999999999998887 6799999999999999998744221 2344444321 123445799999853
Q ss_pred cccccCCHHHHHHHH--HhccCCCCEEEEEcc
Q 022929 184 SIEYWPDPQRGIREA--YRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~--~~~L~pgG~l~i~~~ 213 (290)
-... +..+.+..+ ..+|+|||.+++...
T Consensus 119 PY~~--~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 119 PYAM--DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CTTS--CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cccc--CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 2221 222334433 357999999887643
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.97 E-value=7.4e-10 Score=87.28 Aligned_cols=119 Identities=9% Similarity=0.014 Sum_probs=87.0
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAE 167 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~ 167 (290)
+.+..+++.+++.+.....+.+|||++||+|.++..++.+ +..+|+++|.++.+++.++++.. ..++++++.|+.
T Consensus 23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~ 101 (182)
T d2fhpa1 23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN 101 (182)
T ss_dssp CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch
Confidence 3445566666665544347899999999999999999988 34689999999999999998742 346889999985
Q ss_pred CC----CCCCCCccEEEecCcccccCCHHHHHHHHHh--ccCCCCEEEEEc
Q 022929 168 DL----PFPTDYADRYVSAGSIEYWPDPQRGIREAYR--VLKLGGKACIIG 212 (290)
Q Consensus 168 ~l----~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~~ 212 (290)
+. .....+||+|++.--. ........++.+.. +|+++|.+++..
T Consensus 102 ~~l~~~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 102 RALEQFYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHHHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhhhhcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 42 1234569999975322 23445677777754 699999988764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.89 E-value=1.4e-08 Score=87.34 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=95.6
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-----CCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-----~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
+++.+|||.+||+|.++..+.+.. +..+++|+|+++.++..|+.+.. ..+..+...|..... ...+||+|++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~vi~ 194 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVIS 194 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-cccccccccc
Confidence 367899999999999998886542 24589999999999999986632 235667777765533 3456999999
Q ss_pred cCcccccCC------------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 182 AGSIEYWPD------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 182 ~~~l~~~~~------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
+--...... ...++..+.+.|+|||.+.++.+..- .. -.+...+++.+.+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~---l~---------~~~~~~lR~~L~~ 262 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAM---FG---------TSDFAKVDKFIKK 262 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGG---GG---------STTHHHHHHHHHH
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcc---cc---------CchhHHHHHHHHh
Confidence 644322111 12478999999999999888765321 00 1134567777776
Q ss_pred CCCcEEEEEEcCccccc
Q 022929 244 AGFKDVQLKRIGPKWYR 260 (290)
Q Consensus 244 aGf~~v~~~~~~~~~~~ 260 (290)
. +.+..+..++.....
T Consensus 263 ~-~~i~~ii~lp~~~F~ 278 (328)
T d2f8la1 263 N-GHIEGIIKLPETLFK 278 (328)
T ss_dssp H-EEEEEEEECCGGGSC
T ss_pred C-CcEEEEEECCccccC
Confidence 5 467788888876543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=2.1e-09 Score=86.86 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=81.8
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL 169 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l 169 (290)
..+...++... ++.+|||||||.|..+..+++..+ +.+++++|+++++.+.|+++.. .++++++.+|..+.
T Consensus 45 G~lL~~lv~~~----kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~ 120 (214)
T d2cl5a1 45 GQIMDAVIREY----SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL 120 (214)
T ss_dssp HHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHhh----CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc
Confidence 34444444433 568999999999999999998764 5899999999999999987632 24699999998542
Q ss_pred -C-----CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 170 -P-----FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 170 -~-----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+ ...++||+|+....-... .....+.+..++|+|||.+++-+..+
T Consensus 121 l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Ddvl~ 171 (214)
T d2cl5a1 121 IPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADNVIV 171 (214)
T ss_dssp GGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred ccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeCcCC
Confidence 2 344579999976321111 11234667778999999876644333
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.84 E-value=6.5e-09 Score=87.09 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=77.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------------CCCceEEEcCCCCCCCCCCCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------------LKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------------~~~v~~~~~d~~~l~~~~~~~ 176 (290)
++.+||.||+|.|..+..+++. +..+++.+|+++++++.|++... .++++++.+|....--.+++|
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 6789999999999999998875 56799999999999999987542 356889999884321124579
Q ss_pred cEEEecCcccccCC----HHHHHHHHHhccCCCCEEEEEc
Q 022929 177 DRYVSAGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 177 D~i~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
|+|++...-..-+. -.++++.+.+.|+|||.+++..
T Consensus 151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 99997533221111 1479999999999999998754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=8.4e-09 Score=83.38 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=82.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-----CCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-----FPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-----~~~~~~D~ 178 (290)
+.++|||||||+|.-+..+++..+ +.+++.+|.+++..+.|+++.. ..+++++.+|+.+. + ...++||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 578999999999999999999876 6899999999999999987732 35689999987431 1 23457999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
|+...- -.+....++.+.+.|+|||.+++-+..+
T Consensus 139 ifiD~d---k~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 139 AVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp EEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEeCC---HHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 997532 2456678899999999999998866544
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.80 E-value=1.3e-08 Score=83.16 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=73.6
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~ 173 (290)
..+.+.+++..... ++++|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++.+|+.+++++.
T Consensus 7 ~~i~~~iv~~~~~~-~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 7 KHNIDKIMTNIRLN-EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHHHTTCCCC-TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHHhcCCC-CCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccc
Confidence 44566777776654 8999999999999999999998 6799999999999999998754 468999999998877665
Q ss_pred CCccEEEecCcccccCCHHHHHHHH
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREA 198 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~ 198 (290)
.....|++ +.-.+++. .++..+
T Consensus 84 ~~~~~vv~-NLPYnIss--~il~~l 105 (235)
T d1qama_ 84 NQSYKIFG-NIPYNIST--DIIRKI 105 (235)
T ss_dssp SCCCEEEE-ECCGGGHH--HHHHHH
T ss_pred cccceeee-eehhhhhH--HHHHHH
Confidence 43444443 33334433 344444
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.79 E-value=4.4e-09 Score=89.60 Aligned_cols=103 Identities=19% Similarity=0.134 Sum_probs=80.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC--------CCCCceEEEcCCCCC-CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLKECKIVEGDAEDL-PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--------~~~~v~~~~~d~~~l-~~~~~~~D~i~ 180 (290)
..++||.||.|.|..+..+++..+..++++||+++++++.+++.+ ..++++++.+|.... ...+++||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 568999999999999999998877789999999999999999764 235789999998542 22345799999
Q ss_pred ecCccccc-CC------HHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYW-PD------PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~-~~------~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+...-.+. .. -.++++.+.+.|+|||.+++..
T Consensus 157 ~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 64321111 11 1478999999999999998753
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=3e-08 Score=79.11 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=80.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHH---hhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA---KQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a---~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|+|+|||.|.-++.++-.+|+.+++.+|.+..-+... .......|+++++..+++... ..+||+|++..+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEECSCS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-ccccceehhhhh--
Confidence 46799999999999999999999999999999998655444 445666789999999988653 456999998755
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.....+++-+...++++|.+++.-
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 346788999999999999988753
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.74 E-value=6.4e-08 Score=80.73 Aligned_cols=132 Identities=16% Similarity=0.045 Sum_probs=93.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------CCCCceEEEcCCCC-CCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAED-LPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~v~~~~~d~~~-l~~~~~~~D~i~~ 181 (290)
+..+||-||.|.|..+..+.+..+..+++.+|+++++++.|++.. ..++++++.+|... +...+++||+|++
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 568999999999999999998866789999999999999998764 34578999999843 2233567999998
Q ss_pred cCcccccCC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
...-..-+. -.++++.+.+.|+|+|.++......... .. ....+.+.|++. |..+.....
T Consensus 155 D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~--~~----------~~~~i~~tl~~~-F~~v~~y~~ 218 (274)
T d1iy9a_ 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT--PE----------LITNVQRDVKEI-FPITKLYTA 218 (274)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTC--HH----------HHHHHHHHHHTT-CSEEEEEEE
T ss_pred cCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcccc--HH----------HHHHHHHhhhhh-cCceEEEEE
Confidence 533211111 2479999999999999998764322110 00 124556667766 555555443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.72 E-value=1.6e-07 Score=76.33 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=95.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHH---HHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL---AKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~---~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~ 183 (290)
...+|+|||+|.|.-++.++-..|+.+++.+|.+..-+ +.+.+.....++.+++..++.+. -..++||+|++..
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 46799999999999999999988999999999998644 44555556678888888776543 1234699999975
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+ .....+++-+...+++||.+++.--.... . ..++....+...|+++.++..+.
T Consensus 150 v----a~l~~ll~~~~~~l~~~g~~i~~KG~~~~---~-----------El~~a~~~~~~~~~~~~~v~~~~ 203 (239)
T d1xdza_ 150 V----ARLSVLSELCLPLVKKNGLFVALKAASAE---E-----------ELNAGKKAITTLGGELENIHSFK 203 (239)
T ss_dssp C----SCHHHHHHHHGGGEEEEEEEEEEECC-CH---H-----------HHHHHHHHHHHTTEEEEEEEEEE
T ss_pred h----hCHHHHHHHHhhhcccCCEEEEECCCChH---H-----------HHHHHHHHHHHcCCEEEEEEEEe
Confidence 4 35778999999999999998775311100 0 23455667788899988877654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=1.3e-07 Score=79.51 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=80.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------CCCCceEEEcCCCCC-CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDL-PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~v~~~~~d~~~l-~~~~~~~D~i~~ 181 (290)
..++||-||.|.|..+..+++..+..++++||+++++++.+++.. ..++++++.+|.... .-.+++||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 568999999999999999999876789999999999999998764 246789999998432 223457999997
Q ss_pred cCccccc-CC----HHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYW-PD----PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~-~~----~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
...-... +. ..++++.+.+.|+|||.+++...
T Consensus 169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 5332211 11 24799999999999999988643
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.70 E-value=2.1e-08 Score=78.87 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=74.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCC---CCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAE---DLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~---~l~~~~~~~D~i~~ 181 (290)
.+.+|||+.||+|.++.+++.+ +..+|+.||.+..+++..+++.. .....+...|+. .......+||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 6789999999999999999988 35799999999999999988732 223555566542 22333456999998
Q ss_pred cCcccccCCHHHHHHHHHh--ccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYR--VLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~~~ 213 (290)
.--... ......++.+.. +|+++|.+++...
T Consensus 122 DPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 122 DPPFHF-NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred chhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 533221 234567777654 7999999988754
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.65 E-value=7.4e-08 Score=81.37 Aligned_cols=104 Identities=21% Similarity=0.180 Sum_probs=78.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC-CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l-~~~~~~~D~i~~ 181 (290)
...+||-||.|.|..+..+++..+..+++.+|+++++++.+++... .++++++.+|.... ....++||+|++
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 5689999999999999999998666899999999999999998753 25688888887432 223457999998
Q ss_pred cCcccccCC----HHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
...-..-+. -..+++.+.+.|+|||.++....
T Consensus 186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 533221111 13689999999999999988643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.63 E-value=3e-08 Score=80.37 Aligned_cols=102 Identities=12% Similarity=0.057 Sum_probs=81.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C------CCCCCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P------FPTDYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~------~~~~~~D 177 (290)
+.++|||||++.|.-+..+++..| +++++.+|.+++..+.|+++.. .++++++.++..+. + ...++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 578999999999999999998876 5899999999999999987742 34688999988432 1 1245799
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+|+... .-.++...++.+.++|+|||.+++-+..
T Consensus 139 ~iFiDa---~k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 139 FIFVDA---DKDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp EEEECS---CSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred EEEecc---chhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 999753 2245678899999999999999886544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.62 E-value=1.9e-09 Score=88.63 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=70.7
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~~ 175 (290)
+.+.+++.+... ++++|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++++|+.+++++...
T Consensus 17 ii~kIv~~~~~~-~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~ 93 (245)
T d1yuba_ 17 VLNQIIKQLNLK-ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp THHHHHHHCCCC-SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHHhcCCC-CCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence 444555555543 7899999999999999999998 6799999999999988887754 45799999999988887776
Q ss_pred ccEEEecCcccccCC
Q 022929 176 ADRYVSAGSIEYWPD 190 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~ 190 (290)
++.|+++.- .+++.
T Consensus 94 ~~~vv~NLP-Y~Ist 107 (245)
T d1yuba_ 94 RYKIVGNIP-YHLST 107 (245)
T ss_dssp EEEEEEECC-SSSCH
T ss_pred eeeEeeeee-hhhhH
Confidence 666665543 34543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=3.8e-08 Score=82.52 Aligned_cols=132 Identities=19% Similarity=0.150 Sum_probs=92.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------CCCCceEEEcCCCCC-CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDL-PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~v~~~~~d~~~l-~~~~~~~D~i~~ 181 (290)
..++||-||.|.|..+..+.+..+..+++.+|+++++++.|++.+ ..++++++.+|.... ....++||+|++
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 568999999999999999998877789999999999999998765 246899999997432 223457999998
Q ss_pred cCcccccCC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
...-..-+. -.++++.+.+.|+|||.+++........ .. ....+.+.+++. |..+.....
T Consensus 158 D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~--~~----------~~~~~~~tl~~~-F~~v~~y~~ 221 (285)
T d2o07a1 158 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH--LD----------LIKEMRQFCQSL-FPVVAYAYC 221 (285)
T ss_dssp ECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC--HH----------HHHHHHHHHHHH-CSEEEEEEE
T ss_pred cCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhh--HH----------HHHHHHHHHHhc-CCeeeEEee
Confidence 532111111 1268999999999999998864332110 00 123455566654 777666543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.61 E-value=6.4e-08 Score=81.35 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=92.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------CCCCceEEEcCCCCC--CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDL--PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~v~~~~~d~~~l--~~~~~~~D~i~ 180 (290)
+.++||-||.|.|..+..+.+..+..+++.+|+++++++.+++.. ..++++++.+|.... ...+++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 568999999999999999999876689999999999999998864 246788999987432 23345799999
Q ss_pred ecCcccccCC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+...-..-+. -..+++.+.+.|+|||.+++........ .. ....+.+.+++....++..
T Consensus 160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~--~~----------~~~~i~~~l~~vF~~~~~y 222 (290)
T d1xj5a_ 160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLH--MD----------IIEDIVSNCREIFKGSVNY 222 (290)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTC--HH----------HHHHHHHHHHHHCSSCEEE
T ss_pred EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHH--HH----------HHHHHHhhhhhhcccceeE
Confidence 7433211111 1479999999999999998875432110 00 1234556677776555443
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=7.8e-07 Score=76.93 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=92.2
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC-C
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL-P 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l-~ 170 (290)
+.+.+.+++.+.. .++.+|||+-||.|.++..+++. ..+|+|+|.++++++.|++++. ..|++|+.+|..+. .
T Consensus 198 e~l~~~v~~~~~~-~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~ 274 (358)
T d1uwva2 198 QKMVARALEWLDV-QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 274 (358)
T ss_dssp HHHHHHHHHHHTC-CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS
T ss_pred hHHHHHHHHhhcc-CCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhh
Confidence 4445555555544 36789999999999999999987 6899999999999999998743 45789999988653 2
Q ss_pred ---CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 171 ---FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 171 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
....++|+|+..---.- ..+.++.+.+. +|.-.+|++.. ..+. ..++ ..|.+.||+
T Consensus 275 ~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVSCn-p~Tl---------------aRDl-~~l~~~gy~ 333 (358)
T d1uwva2 275 KQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVSCN-PATL---------------ARDS-EALLKAGYT 333 (358)
T ss_dssp SSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEESC-HHHH---------------HHHH-HHHHHTTCE
T ss_pred hhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEeCC-HHHH---------------HHHH-HHHHHCCCe
Confidence 22356899986321111 12456666553 66667767642 1110 1223 345567999
Q ss_pred EEEEEEcC
Q 022929 248 DVQLKRIG 255 (290)
Q Consensus 248 ~v~~~~~~ 255 (290)
+.++..+.
T Consensus 334 l~~i~~~D 341 (358)
T d1uwva2 334 IARLAMLD 341 (358)
T ss_dssp EEEEEEEC
T ss_pred EeEEEEEe
Confidence 88887653
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.57 E-value=6.8e-08 Score=75.53 Aligned_cols=131 Identities=22% Similarity=0.304 Sum_probs=94.8
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTD 174 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~~~ 174 (290)
.+++.+.. .++..++|..+|.|..+..+++. +.+|+|+|.+++++..+++.. ..++.+++.+..++. ...+
T Consensus 9 Evl~~l~~-~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~-~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 9 EALDLLAV-RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH-LPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp HHHHHHTC-CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC-CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HHHHhcCC-CCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc-ccceeEeehHHHHHHHHHHHcCCC
Confidence 34444433 38899999999999999999997 579999999999999998764 467889998876542 3345
Q ss_pred CccEEEecCccccc--CC-------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 175 YADRYVSAGSIEYW--PD-------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 175 ~~D~i~~~~~l~~~--~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
++|.|+....+... .+ ....|......|+|||.+.+...... ....+.+.+++.+
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~----------------Ed~ivk~~~~e~~ 148 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL----------------EDRVVKRFLRESG 148 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH----------------HHHHHHHHHHHHC
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc----------------hhHHHHHHHhhcc
Confidence 69999885443322 22 23578888999999999998875321 1234667777777
Q ss_pred CcEEE
Q 022929 246 FKDVQ 250 (290)
Q Consensus 246 f~~v~ 250 (290)
++.+.
T Consensus 149 ~k~i~ 153 (182)
T d1wg8a2 149 LKVLT 153 (182)
T ss_dssp SEESC
T ss_pred ceecc
Confidence 76443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.54 E-value=6.1e-08 Score=78.09 Aligned_cols=109 Identities=16% Similarity=0.044 Sum_probs=75.0
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~ 175 (290)
+.+.+++.+.. .++.+|||.|||+|.++..+.+..+ ...++|+|+++.++..++ ...++++|...... ...
T Consensus 7 i~~~m~~l~~~-~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~------~~~~~~~~~~~~~~-~~~ 78 (223)
T d2ih2a1 7 VVDFMVSLAEA-PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP------WAEGILADFLLWEP-GEA 78 (223)
T ss_dssp HHHHHHHHCCC-CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT------TEEEEESCGGGCCC-SSC
T ss_pred HHHHHHHhcCC-CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc------cceeeeeehhcccc-ccc
Confidence 34444444443 3788999999999999988876644 467999999886544332 34667777765443 356
Q ss_pred ccEEEecCcccccC---C--------------------------HHHHHHHHHhccCCCCEEEEEcc
Q 022929 176 ADRYVSAGSIEYWP---D--------------------------PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 176 ~D~i~~~~~l~~~~---~--------------------------~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
||+++++....... . ...++..+.+.|++||.+.++.+
T Consensus 79 fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 79 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 99999864432210 0 12467788899999999988765
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=4.2e-07 Score=70.86 Aligned_cols=125 Identities=19% Similarity=0.239 Sum_probs=86.4
Q ss_pred ccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCC
Q 022929 104 PADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTD 174 (290)
Q Consensus 104 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~ 174 (290)
...+.+++.+|||+||++|.++..+.+..+ ...++++|+.+- ....++.++.+|..+.. ....
T Consensus 16 k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~--------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T d1ej0a_ 16 SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM--------DPIVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC--------CCCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc--------cccCCceEeecccccchhhhhhhhhccCc
Confidence 334445889999999999999999887643 478999998541 12457889999986532 3345
Q ss_pred CccEEEecCcccccCCHH-----------HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 175 YADRYVSAGSIEYWPDPQ-----------RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~-----------~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
++|+|+|........+.. ..+.-+.++|++||.+++-..... ...++...++.
T Consensus 88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~----------------~~~~l~~~l~~ 151 (180)
T d1ej0a_ 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE----------------GFDEYLREIRS 151 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST----------------THHHHHHHHHH
T ss_pred ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc----------------cHHHHHHHHHh
Confidence 799999987765544321 466677899999999998654321 23455566665
Q ss_pred CCCcEEEEEE
Q 022929 244 AGFKDVQLKR 253 (290)
Q Consensus 244 aGf~~v~~~~ 253 (290)
. |+.+.+.+
T Consensus 152 ~-F~~V~~~K 160 (180)
T d1ej0a_ 152 L-FTKVKVRK 160 (180)
T ss_dssp H-EEEEEEEC
T ss_pred h-cCEEEEEC
Confidence 3 76555544
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1e-06 Score=73.13 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=65.0
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~ 171 (290)
.+.+.+++..... +++.|||||+|.|.++..+++. +.+++++|+++.+++..++.... .+++++.+|+...++
T Consensus 8 ~i~~kIv~~~~~~-~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 8 LIINSIIDKAALR-PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHHTCCC-TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHhCCC-CCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 4555666665543 7899999999999999999998 67999999999999999876432 478999999987665
Q ss_pred CCCCccEEEec
Q 022929 172 PTDYADRYVSA 182 (290)
Q Consensus 172 ~~~~~D~i~~~ 182 (290)
+. ++.|+++
T Consensus 85 ~~--~~~vV~N 93 (278)
T d1zq9a1 85 PF--FDTCVAN 93 (278)
T ss_dssp CC--CSEEEEE
T ss_pred hh--hhhhhcc
Confidence 43 5666654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.31 E-value=1.7e-06 Score=73.36 Aligned_cols=130 Identities=14% Similarity=0.099 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCCCCCCCccEEEe---
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPFPTDYADRYVS--- 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~~~~~~~D~i~~--- 181 (290)
+++.+|||++||.|.=+..++.... ...++++|.++.-+...+++ ....++.....|...++.....||.|++
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEccc
Confidence 4889999999999998888887654 47899999999888877755 3345677777776665555667999987
Q ss_pred ---cCcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 182 ---AGSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 182 ---~~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
..++..-++ ..+++.++.+.|||||.++.+++..... -+.+-+...++
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e-------------ENE~VV~~~L~ 261 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE-------------ENEFVIQWALD 261 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG-------------GTHHHHHHHHH
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH-------------hHHHHHHHHHh
Confidence 122221121 1268899999999999998887765332 13455667778
Q ss_pred HCCCcEEEE
Q 022929 243 KAGFKDVQL 251 (290)
Q Consensus 243 ~aGf~~v~~ 251 (290)
+.+|+++.+
T Consensus 262 ~~~~~~~~~ 270 (313)
T d1ixka_ 262 NFDVELLPL 270 (313)
T ss_dssp HSSEEEECC
T ss_pred cCCCEEeec
Confidence 788776654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.25 E-value=6e-06 Score=72.94 Aligned_cols=150 Identities=16% Similarity=0.147 Sum_probs=98.6
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-------------CCeEEEEeCCHHHHHHHhhhC-----CCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQKE-----PLK 157 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~-----~~~ 157 (290)
.+++.+++.+.. .++.+|+|.+||+|.++..+.+... ...++|+|+++.+...|+-+. ...
T Consensus 149 ~Iv~~mv~ll~~-~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 149 PLIQAMVDCINP-QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHHCC-CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred hhhHhhheeccC-cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence 444444554443 3678999999999999988876532 135999999999999988652 223
Q ss_pred CceEEEcCCCCCCCCCCCccEEEecCccccc----------------CC-HHHHHHHHHhccCCCCEEEEEccCCCchhH
Q 022929 158 ECKIVEGDAEDLPFPTDYADRYVSAGSIEYW----------------PD-PQRGIREAYRVLKLGGKACIIGPVYPTFWL 220 (290)
Q Consensus 158 ~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~----------------~~-~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 220 (290)
+..+...|....+ ...+||+|+++--.... .+ ...++..+...|++||.+.++.+...
T Consensus 228 ~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~---- 302 (425)
T d2okca1 228 RSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNV---- 302 (425)
T ss_dssp CCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH----
T ss_pred cceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHH----
Confidence 4567778876533 34579999995333211 01 12589999999999999888754210
Q ss_pred hhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 221 SRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
.+.. -....+++.|-+.+ .+..+..++....
T Consensus 303 --L~~~-----~~~~~iR~~Ll~~~-~i~aIi~LP~~~F 333 (425)
T d2okca1 303 --LFEA-----GAGETIRKRLLQDF-NLHTILRLPTGIF 333 (425)
T ss_dssp --HHCS-----THHHHHHHHHHHHE-EEEEEEECCSSSS
T ss_pred --hhhh-----hhHHHHHHHHHHhc-chhHhhcCCcccc
Confidence 0000 01346777776654 4778888887654
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.23 E-value=8.8e-07 Score=71.70 Aligned_cols=100 Identities=13% Similarity=0.012 Sum_probs=66.7
Q ss_pred CCCEEEEEcCccchhHHHHHhh----CCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~ 181 (290)
++++|||||++.|.-+..++.. .+..+++++|+++......... ..+++++.+|..+.. +....+|.|+.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~--~~~I~~i~gDs~~~~~~~~l~~~~~dlIfI 157 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--MENITLHQGDCSDLTTFEHLREMAHPLIFI 157 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--CTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc--ccceeeeecccccHHHHHHHHhcCCCEEEE
Confidence 5689999999999877666533 2468999999976543332222 357999999875532 33445888887
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-.. |+-......+ .+..+|++||++++.+.
T Consensus 158 D~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 158 DNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp ESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred cCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 544 3222111223 35689999999998875
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=9e-07 Score=72.60 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=58.6
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLP 170 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~ 170 (290)
.+.+.+++.+... +++.|||||||.|.++..+++. +.+++++|+++.+++..+++.. ..+++++.+|+.+++
T Consensus 8 ~~~~~Iv~~~~~~-~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 8 FVIDSIVSAINPQ-KGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCCC-TTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCCC-CCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhc
Confidence 3455555555543 7889999999999999999988 6799999999999999987643 457999999998765
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=6.8e-06 Score=68.56 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCC-CCCCCccEEEe---
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLP-FPTDYADRYVS--- 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~-~~~~~~D~i~~--- 181 (290)
.++.+|||++++.|.-+..+++...+..++++|+++.-+...+++. ...++.....|..... .....||.|++
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 4789999999999999999998876789999999998777776553 3333443433332211 23456999997
Q ss_pred ---cCcccccCCH----------------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 182 ---AGSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 182 ---~~~l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
..++..-++. .++|+++.+.|||||.|+.+++..... -+.+-+..+++
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~-------------ENE~vv~~~l~ 247 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-------------ENSLQIKAFLQ 247 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-------------GTHHHHHHHHH
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh-------------hCHHHHHHHHH
Confidence 2223222221 268999999999999999988765432 03344555666
Q ss_pred H-CCCcEE
Q 022929 243 K-AGFKDV 249 (290)
Q Consensus 243 ~-aGf~~v 249 (290)
+ .+|+++
T Consensus 248 ~~~~~~~~ 255 (284)
T d1sqga2 248 RTADAELC 255 (284)
T ss_dssp HCTTCEEC
T ss_pred hCCCcEEe
Confidence 5 456544
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.94 E-value=3.1e-06 Score=73.29 Aligned_cols=101 Identities=20% Similarity=0.135 Sum_probs=76.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC------------------CceEEEcCCCCCC-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------------------ECKIVEGDAEDLP- 170 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------~v~~~~~d~~~l~- 170 (290)
++.+|||..||+|..++..+...+..+|+++|+|+++++.+++|...+ .+.+.+.|+..+-
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 568999999999999998888777779999999999999999874321 2344455542221
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.....||+|...- ...+..++..+.+.++.||.|++....
T Consensus 125 ~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 1234699998643 445677999999999999999997543
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=0.00011 Score=61.32 Aligned_cols=107 Identities=13% Similarity=0.074 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCCCC---CCCccEEEe
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPFP---TDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~~~---~~~~D~i~~ 181 (290)
.++.+|||++||+|.-+..++... +...++++|+++.-++..+++ ....++.+...|...+... .++||.|+.
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 378999999999999888888764 357899999999888887765 4446788888887655322 245999987
Q ss_pred c------CcccccCC-----------H-------HHHHHHHHhccCCCCEEEEEccCCC
Q 022929 182 A------GSIEYWPD-----------P-------QRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 182 ~------~~l~~~~~-----------~-------~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
. .++...++ . ..++..+. .++|||.|+.+++...
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 2 11111111 0 13455555 4799999888877654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.89 E-value=1.8e-05 Score=63.65 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHH--HHhhhCCCCCceEEEc-CCCCCCCCCCCccEEEecCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA--KAKQKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~--~a~~~~~~~~v~~~~~-d~~~l~~~~~~~D~i~~~~~l 185 (290)
.+..+|+|+|||.|.++..++...+...+.|+|+--+..+ ...+....+-+++... |+.. .+....|+|+|...-
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm~e 142 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDIGE 142 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECCCC
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCCEEEeeCCC
Confidence 4778999999999999999998865678888888322100 0000000011333332 2223 345679999998654
Q ss_pred cccCCHH-------HHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQ-------RGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~-------~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. .+++. ++++-+.++|+|||.+++-..
T Consensus 143 s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 143 S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 3 44432 577778899999999887544
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=8.1e-05 Score=67.22 Aligned_cols=153 Identities=14% Similarity=0.051 Sum_probs=92.9
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC------------------CCeEEEEeCCHHHHHHHhhhCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD------------------AKNVTILDQSPHQLAKAKQKEPLK 157 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~------------------~~~v~~vD~s~~~~~~a~~~~~~~ 157 (290)
.+++.++..+.. .++.+|+|..||+|.++..+.+... ...++|+|+++.+...|+-+....
T Consensus 151 ~Iv~~mv~ll~~-~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~ 229 (524)
T d2ar0a1 151 PLIKTIIHLLKP-QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 229 (524)
T ss_dssp HHHHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred chhHhhhhcccC-ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence 444444444443 3678999999999999987765421 125899999999999988652111
Q ss_pred --------CceEEEcCCCCCC-CCCCCccEEEecCccc--cc-----------CCH-HHHHHHHHhccCCCCEEEEEccC
Q 022929 158 --------ECKIVEGDAEDLP-FPTDYADRYVSAGSIE--YW-----------PDP-QRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 158 --------~v~~~~~d~~~l~-~~~~~~D~i~~~~~l~--~~-----------~~~-~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+..+...+....+ ....+||+|+++--+. .. .+. -.++..+.+.|++||++.++.+.
T Consensus 230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~ 309 (524)
T d2ar0a1 230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 309 (524)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence 1223444432211 2335699999953321 11 111 25899999999999999887542
Q ss_pred CCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccccc
Q 022929 215 YPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (290)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~ 261 (290)
.- . +.. -....+++.|-+.+ .+..+..++.....+
T Consensus 310 ~~---L---f~~-----~~~~~iR~~Ll~~~-~i~aII~LP~~~F~~ 344 (524)
T d2ar0a1 310 NV---L---FEG-----GKGTDIRRDLMDKC-HLHTILRLPTGIFYA 344 (524)
T ss_dssp HH---H---HCC-----THHHHHHHHHHHHE-EEEEEEECCSSCSSS
T ss_pred HH---h---hhh-----hhhHHHHHHHHHcC-CceEEEECCCCcCCC
Confidence 10 0 000 01245666666654 477888888765533
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.66 E-value=0.00021 Score=60.88 Aligned_cols=145 Identities=15% Similarity=0.074 Sum_probs=89.0
Q ss_pred CCEEEEEcCccchhHHHHH--------h--------hCCCCeEEEEeCCHH-HHHHHhhhCC---CC-C--ceEEEcCCC
Q 022929 111 NMLVVDVGGGTGFTTLGIV--------K--------HVDAKNVTILDQSPH-QLAKAKQKEP---LK-E--CKIVEGDAE 167 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~--------~--------~~~~~~v~~vD~s~~-~~~~a~~~~~---~~-~--v~~~~~d~~ 167 (290)
.-+|.|+||.+|..+..+. + ..|..+|..-|+-.. .-...+.... .. + +.-+.+++.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 3679999999998764221 1 124577888888432 2222222111 11 1 222455665
Q ss_pred CCCCCCCCccEEEecCcccccCC---------------------------------HHHHHHHHHhccCCCCEEEEEccC
Q 022929 168 DLPFPTDYADRYVSAGSIEYWPD---------------------------------PQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 168 ~l~~~~~~~D~i~~~~~l~~~~~---------------------------------~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.--+|+++.|+++|.+++||++. ...+|+.=.+-|+|||.+++....
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 54588899999999999999853 114777777889999999987543
Q ss_pred CCch------------hHhhhhHHHh----------------hcCCCHHHHHHHHHHCC-CcEEEEEEcC
Q 022929 215 YPTF------------WLSRYFADVW----------------MLFPKEEEYIEWFQKAG-FKDVQLKRIG 255 (290)
Q Consensus 215 ~~~~------------~~~~~~~~~~----------------~~~~~~~~~~~ll~~aG-f~~v~~~~~~ 255 (290)
.+.. .+...+.++. ..+++.+|+++.+++.| |++.+.+.+.
T Consensus 212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~ 281 (359)
T d1m6ex_ 212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASE 281 (359)
T ss_dssp CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEE
T ss_pred cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeee
Confidence 3210 1111111111 13478999999998877 6777776544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.45 E-value=0.00055 Score=51.77 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----------CCCCCcc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----------FPTDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----------~~~~~~D 177 (290)
+++++||-+|||. |.++..+++.. +.+++++|.+++-++.+++... . ..+..+-.... ...+.+|
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga--~-~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA--D-VTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC--S-EEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCC--c-EEEeccccccccchhhhhhhcccccCCc
Confidence 3889999999995 88888888886 6799999999999999987543 1 12222221111 1124589
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+|+-.-. ....++.+.++++|+|.+++.....
T Consensus 101 ~vid~~g------~~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 101 VTIDCSG------NEKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp EEEECSC------CHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred eeeecCC------ChHHHHHHHHHHhcCCceEEEecCC
Confidence 8884322 2357888999999999999876543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.43 E-value=0.00028 Score=59.53 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=51.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED 168 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~ 168 (290)
++..|||||+|.|.++..+.+.....+++++|+++...+..++.....+++++.+|...
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 56799999999999999998874346899999999999999988776789999999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.35 E-value=8.7e-05 Score=57.25 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=66.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC--------C-CCCCCccE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--------P-FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l--------~-~~~~~~D~ 178 (290)
+++++||-+|||. |..+..+++..+..+|+++|.+++.++.+++... . ..+...-.+. . .....+|+
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~~i~~~~~~~g~Dv 103 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA-D--LTLNRRETSVEERRKAIMDITHGRGADF 103 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccccc-e--EEEeccccchHHHHHHHHHhhCCCCceE
Confidence 4889999999995 8888899988744589999999999999987532 1 1222111110 0 12335999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
|+-.-.- ...++...+.|++||++++...
T Consensus 104 vid~vG~------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 104 ILEATGD------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp EEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred EeecCCc------hhHHHHHHHHhcCCCEEEEEee
Confidence 8854221 2367888999999999988754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.22 E-value=0.0015 Score=50.77 Aligned_cols=100 Identities=25% Similarity=0.286 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~i 179 (290)
+++++||-+|||. |..+..+++..+..+|+++|.+++-++.|++... +... +..+.+ .....+|++
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga----~~~~-~~~~~~~~~~i~~~t~g~g~D~v 98 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF----EIAD-LSLDTPLHEQIAALLGEPEVDCA 98 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----EEEE-TTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc----cEEE-eCCCcCHHHHHHHHhCCCCcEEE
Confidence 3899999999998 7777888888777899999999999999987632 2222 211111 123458998
Q ss_pred EecCcccc---------cCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 180 VSAGSIEY---------WPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 180 ~~~~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+-...... .......++.+.++++|||.+.+...
T Consensus 99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred EECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 85432111 11234689999999999999998764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00035 Score=53.07 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~i 179 (290)
+++++||=+|||. |..+..+++..+..+|+++|.++.-++.|++... . .++..+-.+.. .....+|+|
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga-~--~~~~~~~~~~~~~~~~~~~~~g~g~Dvv 101 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA-D--LVLQISKESPQEIARKVEGQLGCKPEVT 101 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-S--EEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC-c--ccccccccccccccccccccCCCCceEE
Confidence 3789999999996 7777888888755689999999999999987532 1 12222211110 012358998
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+-... -...++...+++++||++++.....
T Consensus 102 id~~G------~~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 102 IECTG------AEASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp EECSC------CHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred EeccC------CchhHHHHHHHhcCCCEEEEEecCC
Confidence 85432 2357889999999999999976543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.03 E-value=0.0017 Score=48.77 Aligned_cols=95 Identities=19% Similarity=0.194 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~~~~~D~i~~~ 182 (290)
+++++||=+|+|. |..+..+++.. +.+|+++|.+++-++.+++... ..++..+-.+.. ...+.+|.|++.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga---~~~i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGA---SLTVNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC---SEEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred CCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCc---cccccccchhHHHHHHHhhcCCccccccc
Confidence 3789999999996 78888888887 5899999999999999987532 123322221110 112223344432
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.. ...++...+.|+|+|++++....
T Consensus 102 ~~-------~~~~~~~~~~l~~~G~iv~~G~~ 126 (166)
T d1llua2 102 VS-------NSAFGQAIGMARRGGTIALVGLP 126 (166)
T ss_dssp SC-------HHHHHHHHTTEEEEEEEEECCCC
T ss_pred cc-------chHHHHHHHHhcCCcEEEEEEec
Confidence 21 24678889999999999887543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.03 E-value=0.0013 Score=50.14 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=67.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~~ 181 (290)
+++++||=+|||. |..+..+++..+..+|+++|.+++-++.+++... ..++..+-.+.. .....+|+|+-
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa---~~~i~~~~~~~~~~v~~~t~g~G~D~vid 102 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA---TDILNYKNGHIEDQVMKLTNGKGVDRVIM 102 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC---SEEECGGGSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc---cccccccchhHHHHHHHHhhccCcceEEE
Confidence 3889999999997 8888999998755689999999999999987642 122222111110 22345999885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.-.. ...+++..++++|+|.+++...
T Consensus 103 ~~g~------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 103 AGGG------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp CSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred ccCC------HHHHHHHHHHHhcCCEEEEEee
Confidence 4322 2467888899999999998754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.02 E-value=0.0016 Score=49.41 Aligned_cols=96 Identities=18% Similarity=0.247 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
+++.+||=+|||. |..+..+++..+...++++|.++.-++.+++... .+++..+-.+. .+.++.+|+|+-.
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga---~~~i~~~~~~~~~~i~~~t~gg~D~vid~ 103 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA---THVINSKTQDPVAAIKEITDGGVNFALES 103 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC---SEEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC---eEEEeCCCcCHHHHHHHHcCCCCcEEEEc
Confidence 4899999999986 6677788877766788899999999999987632 23343332221 1223469998843
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-. ....++.+.++++|+|.+++...
T Consensus 104 ~G------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 104 TG------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp SC------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred CC------cHHHHHHHHhcccCceEEEEEee
Confidence 22 23577889999999999988653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.93 E-value=0.00013 Score=55.41 Aligned_cols=97 Identities=19% Similarity=0.096 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-CCCCC-CCCCCCccEEEecCcc
Q 022929 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDL-PFPTDYADRYVSAGSI 185 (290)
Q Consensus 109 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d~~~l-~~~~~~~D~i~~~~~l 185 (290)
+++++||-+|+| .|..+..+++.. +.+++++|.+++-++.+++.... .++.. +-.+. ....+.+|+++..-..
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~---~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGAD---HYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCS---EEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCc---EEeeccchHHHHHhhhcccceEEEEecC
Confidence 389999999999 488888888876 68999999999999999876421 22322 11111 1122459988764222
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.+.. .+....+.|+|+|++++...
T Consensus 102 ~~~~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 102 LTDI----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp STTC----CTTTGGGGEEEEEEEEECCC
T ss_pred Cccc----hHHHHHHHhhccceEEEecc
Confidence 2111 24567889999999988754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.92 E-value=0.0026 Score=48.10 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=67.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~~~~~D~i~~~ 182 (290)
+++++||-+|+|. |..+..+++......++++|.+++-++.+++... .+++..+-+... .....+|+|+-.
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga---~~~i~~~~~~~~~~~~~~~~~g~d~vid~ 107 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA---DHVVDARRDPVKQVMELTRGRGVNVAMDF 107 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC---SEEEETTSCHHHHHHHHTTTCCEEEEEES
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc---ceeecCcccHHHHHHHhhCCCCceEEEEe
Confidence 4789999999996 6677777777666789999999999999987542 233332211110 223458988854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..- ...++...+.|+++|++++...
T Consensus 108 ~g~------~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 108 VGS------QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp SCC------HHHHHHGGGGEEEEEEEEECCC
T ss_pred cCc------chHHHHHHHHHhCCCEEEEEeC
Confidence 322 3468889999999999998764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.0014 Score=49.41 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-CCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l~~~~~~~D~i~~~~~l~ 186 (290)
+++++||=+|||. |.++..+++.. +.+++++|.+++-.+.+++.... .++...-.. .....+.+|+++-.-...
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad---~~i~~~~~~~~~~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGAD---EVVNSRNADEMAAHLKSFDFILNTVAAP 104 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCS---EEEETTCHHHHHTTTTCEEEEEECCSSC
T ss_pred CCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCc---EEEECchhhHHHHhcCCCceeeeeeecc
Confidence 3899999999985 88888888886 67888999999888888865431 222221111 012224599888543221
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..++...+.++++|.+++...
T Consensus 105 ------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 105 ------HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ------CCHHHHHTTEEEEEEEEECCC
T ss_pred ------hhHHHHHHHHhcCCEEEEecc
Confidence 246778899999999998754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.83 E-value=0.0049 Score=46.27 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=67.5
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEE
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~ 180 (290)
+++++||=+|| | .|..+..+++..+...|+++|.+++-++.+++.... ..+..+-.+.. ...+.+|+++
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~~d~vi 102 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD---YVINASMQDPLAEIRRITESKGVDAVI 102 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc---eeeccCCcCHHHHHHHHhhcccchhhh
Confidence 38899999997 4 467777777776567999999999999999876421 22332222210 1234599988
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
-... -...++...+.++|+|.+++....
T Consensus 103 d~~g------~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 103 DLNN------SEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp ESCC------CHHHHTTGGGGEEEEEEEEECCSS
T ss_pred cccc------cchHHHhhhhhcccCCEEEEeccc
Confidence 6432 235677889999999999987544
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.71 E-value=0.00098 Score=50.78 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-------CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-------~~~~~~D~i~ 180 (290)
+++++||=+|||. |..+..+++..+...|+.+|.+++-++.+++.... ..+...-.+.. ...+.+|+++
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~G~d~vi 103 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT---DCLNPRELDKPVQDVITELTAGGVDYSL 103 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC---cccCCccchhhhhhhHhhhhcCCCcEEE
Confidence 4889999999997 99999999998667899999999999999876331 22221111101 1234589998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEccCC
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGPVY 215 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~~~ 215 (290)
-... ....+++..+.+++| |.+++.....
T Consensus 104 e~~G------~~~~~~~a~~~~~~g~G~~v~vG~~~ 133 (174)
T d1e3ia2 104 DCAG------TAQTLKAAVDCTVLGWGSCTVVGAKV 133 (174)
T ss_dssp ESSC------CHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred Eecc------cchHHHHHHHHhhcCCeEEEecCCCC
Confidence 4332 235788999999996 9998876543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.59 E-value=0.0071 Score=45.08 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~~ 181 (290)
+++++||=+|+|+ |..+..+++.. +.+++++|.+++-++.+++... +.......+.. ...+.+|+|++
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~Ga----~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 100 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGA----DLVVNPLKEDAAKFMKEKVGGVHAAVVT 100 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTC----SEEECTTTSCHHHHHHHHHSSEEEEEES
T ss_pred CCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhcCc----ceecccccchhhhhcccccCCCceEEee
Confidence 3889999999997 66777777775 6799999999999999987532 22222111110 11232444432
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.+ -...++...+.|+|+|.+++......
T Consensus 101 -~~------~~~~~~~a~~~l~~~G~i~~~g~~~~ 128 (168)
T d1rjwa2 101 -AV------SKPAFQSAYNSIRRGGACVLVGLPPE 128 (168)
T ss_dssp -SC------CHHHHHHHHHHEEEEEEEEECCCCSS
T ss_pred -cC------CHHHHHHHHHHhccCCceEecccccC
Confidence 21 13578899999999999998765433
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.57 E-value=0.0019 Score=53.45 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=51.1
Q ss_pred CcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC
Q 022929 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
.+....+.+.++...- ++++.|||.-||+|..+..+.+. +.+.+|+|++++.++.|+++..
T Consensus 233 t~kP~~L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 233 ARFPAKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp SCCCTHHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGS
T ss_pred CcCchHHHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHH
Confidence 3445567777776654 48999999999999999998887 8999999999999999998864
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.49 E-value=0.00058 Score=51.43 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=71.1
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++.+|+=||+|. |..+...+..+ +.+|+.+|.+++.++..+.... .+++....+-..+.-.-...|+|+..-.+.--
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~-~~~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc-ccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 578999999996 88888888887 7899999999999988876643 23455444332221111248999987655544
Q ss_pred CCHHHHHHHHHhccCCCCEEEE
Q 022929 189 PDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i 210 (290)
+.|.-+-+++.+.+|||..++=
T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 109 RAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEE
T ss_pred ccCeeecHHHHhhcCCCcEEEE
Confidence 4555567889999999998753
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.40 E-value=0.0027 Score=48.19 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-------CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-------~~~~~~D~i~ 180 (290)
+++++||=+|||. |..+..+++..+..+|+++|.+++-++.+++.... .++...-.+.. ..++.+|+++
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~---~~i~~~~~d~~~~~~~~~~~~~G~d~vi 102 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT---ECLNPKDYDKPIYEVICEKTNGGVDYAV 102 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc---EEEcCCCchhHHHHHHHHhcCCCCcEEE
Confidence 4899999999996 66777777777667999999999999999876431 22221111111 2234589888
Q ss_pred ecCcccccCCHHHHHHHHHhcc-CCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVL-KLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~~ 213 (290)
-.-. . ...++.....+ +++|.+++...
T Consensus 103 d~~g-----~-~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 103 ECAG-----R-IETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp ECSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred EcCC-----C-chHHHHHHHHHHHhcCceEEEEE
Confidence 5322 2 23555555555 55699888754
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.38 E-value=0.0032 Score=50.41 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=49.6
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~ 154 (290)
+....+.+.++.... .+++.|||.-||+|..+..+.+. +.+.+|+|++++.++.|+++.
T Consensus 196 ~kP~~L~~~lI~~~s--~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 196 PKPRDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp CCCHHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhC--CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH
Confidence 344567777776654 48899999999999999888887 789999999999999998764
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.33 E-value=0.0022 Score=48.78 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-CCCCCC------CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDLP------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d~~~l~------~~~~~~D~i~ 180 (290)
+++++|+=+|||. |..+..+++..+..+|+++|.+++-++.|++.... .++.. |..... .....+|+++
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~---~~in~~~~~~~~~~~~~~~~g~G~d~vi 104 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT---ECISPKDSTKPISEVLSEMTGNNVGYTF 104 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS---EEECGGGCSSCHHHHHHHHHTSCCCEEE
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc---EEECccccchHHHHHHHHhccccceEEE
Confidence 4899999999996 77778888887668999999999999999987542 12221 111100 1234588887
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-... ........+..+++.+|.+++...
T Consensus 105 ~~~g-----~~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 105 EVIG-----HLETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp ECSC-----CHHHHHHHHTTSCTTTCEEEECSC
T ss_pred EeCC-----chHHHHHHHHHhhcCCeEEEEEEc
Confidence 4322 233333344445566699888754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.0089 Score=45.00 Aligned_cols=92 Identities=12% Similarity=0.197 Sum_probs=66.0
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccE
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~ 178 (290)
+++++||-.|+ | .|..+..+++.. +.++++++.+++..+.+++... . +++ |..+.. .....+|+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga-~--~vi--~~~~~~~~~~i~~~t~~~g~d~ 100 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGA-H--EVF--NHREVNYIDKIKKYVGEKGIDI 100 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEE--ETTSTTHHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCc-c--ccc--ccccccHHHHhhhhhccCCceE
Confidence 48899999996 4 588888888886 6799999989988888886532 1 222 222211 23456999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
|+.... ...++...++|+|+|.++....
T Consensus 101 v~d~~g-------~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 101 IIEMLA-------NVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp EEESCH-------HHHHHHHHHHEEEEEEEEECCC
T ss_pred Eeeccc-------HHHHHHHHhccCCCCEEEEEec
Confidence 986432 2467888999999999998743
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.04 E-value=0.0034 Score=50.38 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=55.6
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------C-----CCCceEEEcCCCC-CCCCCCCcc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------P-----LKECKIVEGDAED-LPFPTDYAD 177 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~-----~~~v~~~~~d~~~-l~~~~~~~D 177 (290)
..+|||.-||.|..+..++.. +.+|+++|-++......++.. . ..+++++++|..+ +.-...+||
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 358999999999999999988 789999999997655444321 1 1268899999743 222345699
Q ss_pred EEEecCccccc
Q 022929 178 RYVSAGSIEYW 188 (290)
Q Consensus 178 ~i~~~~~l~~~ 188 (290)
+|+.--++.+-
T Consensus 167 vIYlDPMFp~~ 177 (250)
T d2oyra1 167 VVYLDPMFPHK 177 (250)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCccc
Confidence 99987666433
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.00 E-value=0.0059 Score=46.37 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=66.4
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc---C-------CCCCC--CC----
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG---D-------AEDLP--FP---- 172 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~---d-------~~~l~--~~---- 172 (290)
++.+|+=||+|. |..+...+..+ +.+|+++|.+++.++..++.... .++.... + ...+. +.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~-~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGK-FITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCE-ECCC-----------------------CCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcc-eEEEeccccccccccccchhhcCHHHHHHHH
Confidence 578999999996 78888888887 78999999999999988876431 1111000 0 00000 00
Q ss_pred ------CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEE
Q 022929 173 ------TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 173 ------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
-...|+|+..-.+.--..|.-+-+++.+.+|||..++=
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence 02489999876655445555567889999999998753
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.89 E-value=0.0061 Score=49.30 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=50.0
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~ 154 (290)
.....+...++.... .+++.|||.-||+|..+..+.+. +.+++|+|+++...+.|+++.
T Consensus 191 ~kP~~L~~~~I~~~s--~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri 249 (279)
T d1eg2a_ 191 QKPAAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQL 249 (279)
T ss_dssp CCCHHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhc--CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHH
Confidence 445667777777654 48999999999999999999888 789999999999999999774
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.53 E-value=0.16 Score=41.48 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=84.5
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC------CCCCceEEEcCCCCCC--------CCCCCcc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------PLKECKIVEGDAEDLP--------FPTDYAD 177 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~v~~~~~d~~~l~--------~~~~~~D 177 (290)
..|+.+|||--.-...+ ...++.+++=+|. +++++.-++.. ...+..++..|+.+-. +..+..-
T Consensus 91 ~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 46777999976554444 2234678888887 77776544432 1234566777775421 2233455
Q ss_pred EEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhh-hH------------------HHhhcCCCHHH
Q 022929 178 RYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRY-FA------------------DVWMLFPKEEE 236 (290)
Q Consensus 178 ~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~ 236 (290)
++++-.++.|++.. .++++.+.....||+.+++............. .. ..+....+..+
T Consensus 169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (297)
T d2uyoa1 169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAV 248 (297)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCCCchhh
Confidence 77888899998754 47999999999999999886433221110000 00 00111123456
Q ss_pred HHHHHHHCCCcEEEE
Q 022929 237 YIEWFQKAGFKDVQL 251 (290)
Q Consensus 237 ~~~ll~~aGf~~v~~ 251 (290)
..++|...||++...
T Consensus 249 ~~~~l~~~Gw~~~~~ 263 (297)
T d2uyoa1 249 VADWLNRHGWRATAQ 263 (297)
T ss_dssp HHHHHTTTTEEEEEE
T ss_pred HHHHHHhCCCEEEEe
Confidence 789999999986654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.04 E-value=0.073 Score=39.35 Aligned_cols=91 Identities=12% Similarity=0.004 Sum_probs=59.0
Q ss_pred EEEEEcCcc--chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~--G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
+|+=||||. |.++..+.+.....+|+++|.+++.++.+++... +.....+.... .....|+|+..--.. .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~---~~~~~~~~~~~--~~~~~dlIila~p~~---~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI---IDEGTTSIAKV--EDFSPDFVMLSSPVR---T 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS---CSEEESCGGGG--GGTCCSEEEECSCHH---H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc---chhhhhhhhhh--hccccccccccCCch---h
Confidence 588899996 4466677666445789999999999999987532 22222222221 122479888643321 2
Q ss_pred HHHHHHHHHhccCCCCEEEEE
Q 022929 191 PQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 191 ~~~~l~~~~~~L~pgG~l~i~ 211 (290)
...+++++...++++..+.-.
T Consensus 75 ~~~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEEEC
T ss_pred hhhhhhhhhcccccccccccc
Confidence 346888899999888766543
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.16 Score=41.72 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=77.7
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCC---eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecCc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAK---NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGS 184 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~~ 184 (290)
+.+|+|+-||.|.+...+... +. -+.++|+++.+++..+.|.. +..++..|+.++. ++...+|+++...-
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a--G~~~~~~~a~E~~~~a~~~~~~n~~--~~~~~~~di~~~~~~~~~~~~~Dll~ggpP 77 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES--CIPAQVVAAIDVNTVANEVYKYNFP--HTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH--TCSEEEEEEECCCHHHHHHHHHHCT--TSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CCEEEEcCcCccHHHHHHHHc--CCCCeEEEEEECCHHHHHHHHHHCC--CCCcccCchhhCCHhHcCCCCccEEEeecc
Confidence 467999999999998888666 32 36789999999999988864 4567778887654 22224899987322
Q ss_pred cccc---------CCHH-HHHHHHHhc---c--CCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 185 IEYW---------PDPQ-RGIREAYRV---L--KLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 185 l~~~---------~~~~-~~l~~~~~~---L--~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
-..+ .+.. .++-++.++ + +|. +++.+....-.. . ...+.+.+.|++.||.+
T Consensus 78 Cq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~~-~----------~~~~~i~~~l~~~GY~v- 143 (343)
T d1g55a_ 78 CQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEV-S----------STRDLLIQTIENCGFQY- 143 (343)
T ss_dssp ------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGG-S----------HHHHHHHHHHHHTTEEE-
T ss_pred cccccccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCccc-c----------hhhHHHHhhhhcccccc-
Confidence 1111 1222 233444444 3 353 344444332111 0 02356788899999975
Q ss_pred EEEEcCccc
Q 022929 250 QLKRIGPKW 258 (290)
Q Consensus 250 ~~~~~~~~~ 258 (290)
....+....
T Consensus 144 ~~~vlna~d 152 (343)
T d1g55a_ 144 QEFLLSPTS 152 (343)
T ss_dssp EEEEECGGG
T ss_pred ceeeeeccc
Confidence 455555543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.86 E-value=0.064 Score=40.14 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=64.0
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEE
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~ 180 (290)
+++++||=.|+ | .|..+..+++.. +.++++++-+++-.+.+++... . ..+..+-.++. .....+|+|+
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga-~--~vi~~~~~~~~~~v~~~t~~~g~d~v~ 99 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGV-E--YVGDSRSVDFADEILELTDGYGVDVVL 99 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCC-S--EEEETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccc-c--ccccCCccCHHHHHHHHhCCCCEEEEE
Confidence 47899999873 4 578888888886 6788888888888888886532 1 22222211110 2345699999
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
..-. ...++.+.++|+++|+++...
T Consensus 100 d~~g-------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 100 NSLA-------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp ECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred eccc-------chHHHHHHHHhcCCCEEEEEc
Confidence 6443 146788899999999998863
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.083 Score=39.36 Aligned_cols=94 Identities=10% Similarity=0.026 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCc--cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEE
Q 022929 109 NRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G--~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~ 180 (290)
+++++||=.|+| -|..+..+++.. +.+|++++.|++-.+.+++... . +.+..+-.++. .....+|+|+
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa-~--~vi~~~~~d~~~~v~~~t~g~g~d~v~ 102 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGA-W--QVINYREEDLVERLKEITGGKKVRVVY 102 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTC-S--EEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCC-e--EEEECCCCCHHHHHHHHhCCCCeEEEE
Confidence 478999998666 477888888886 6899999999999999987643 1 22322111110 2345689888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....- ..+......++++|.+++...
T Consensus 103 d~~g~-------~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 103 DSVGR-------DTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp ECSCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred eCccH-------HHHHHHHHHHhcCCeeeeccc
Confidence 64332 256788999999999877543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.55 E-value=0.56 Score=38.04 Aligned_cols=131 Identities=14% Similarity=-0.016 Sum_probs=76.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecCcccc-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY- 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~- 187 (290)
.+.+|||+-||-|.+...+.+. +-..+.++|+++.+++..+.|.... .++|+.++... -..+|+++...--..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~~----~~~Di~~~~~~~~~~~Dll~ggpPCq~f 84 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK----PEGDITQVNEKTIPDHDILCAGFPCQAF 84 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC----CBSCGGGSCGGGSCCCSEEEEECCCTTT
T ss_pred CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCCC----CcCchhcCchhhcceeeeeecccccchh
Confidence 5789999999999999988776 2334566999999999999886421 24677554311 124899987321111
Q ss_pred --------cCCHH----HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 188 --------WPDPQ----RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 188 --------~~~~~----~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
..+.. ..+-++.+.++|.= ++.+....-.. ... ....+.+.+.|++.||.+. ...+.
T Consensus 85 S~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~--~~lENV~~~~~-~~~-------~~~~~~i~~~l~~lGY~~~-~~vl~ 153 (327)
T d2c7pa1 85 SISGKQKGFEDSRGTLFFDIARIVREKKPKV--VFMENVKNFAS-HDN-------GNTLEVVKNTMNELDYSFH-AKVLN 153 (327)
T ss_dssp CTTSCCCGGGSTTSCHHHHHHHHHHHHCCSE--EEEEEEGGGGT-GGG-------GHHHHHHHHHHHHTTBCCE-EEEEE
T ss_pred hhhhhhcCCcccchhHHHHHHHHHhccCCcE--Eecccchhhhh-hcc-------chhhHHhhhHHHhcCCcce-eeEec
Confidence 11221 22234445567753 33332221110 000 0124678889999999754 33444
Q ss_pred c
Q 022929 256 P 256 (290)
Q Consensus 256 ~ 256 (290)
.
T Consensus 154 a 154 (327)
T d2c7pa1 154 A 154 (327)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.48 E-value=0.13 Score=38.12 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=64.1
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-------CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-------~~~~~~D~i~ 180 (290)
+++++||=+|||- |.++..+++......|+++|.+++-++.+++.... .++..+-...+ ...+.+|+|+
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~---~~i~~~~~~~~~~~~~~~~~~~g~D~vi 103 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT---ECINPQDFSKPIQEVLIEMTDGGVDYSF 103 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS---EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc---EEEeCCchhhHHHHHHHHHcCCCCcEee
Confidence 4899999999883 66777788877668999999999999999876431 12221111101 1234599998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
-.-. ....++.+..++++||.+++.
T Consensus 104 d~~G------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 104 ECIG------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp ECSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred ecCC------CHHHHHHHHHhhcCCceeEEE
Confidence 5432 235778899999998776654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.47 E-value=0.12 Score=38.33 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cCCCCC------CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDL------PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d~~~l------~~~~~~~D~i~ 180 (290)
+++++||=+|+|. |..+..+++.....+|+++|.+++-.+.+++.... ..+. .+..+. ....+.+|+++
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~G~D~vi 103 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT---ECVNPQDYKKPIQEVLTEMSNGGVDFSF 103 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe---eEEecCCchhHHHHHHHHHhcCCCCEEE
Confidence 4899999999975 55677777777678999999999999999876431 1222 121111 02234599988
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 212 (290)
-.... ...++.....++++ |.+++..
T Consensus 104 d~~G~------~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 104 EVIGR------LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp ECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred ecCCc------hhHHHHHHHHHhcCCcceEEec
Confidence 64433 24567777788776 5555543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.42 E-value=0.02 Score=43.22 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=64.7
Q ss_pred CCCEEEEEcCc--cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-CC-CCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-ED-LPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G--~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~~-l~~~~~~~D~i~~~~~l 185 (290)
++++||=-|++ -|.+++.+++.. +.+|+++.-+++-.+.+++.....-+.. ..+. +. .....+.+|+|+-.-.-
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~-~~~~~~~~~~~~~~gvD~vid~vgg 108 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAR-EDVMAERIRPLDKQRWAAAVDPVGG 108 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEEC-C---------CCSCCEEEEEECSTT
T ss_pred CCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeec-chhHHHHHHHhhccCcCEEEEcCCc
Confidence 67889988854 578889999886 7899999988888888887633211111 1111 11 12345579988854221
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
..+....++|+|||+++.....
T Consensus 109 -------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 109 -------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp -------TTHHHHHHTEEEEEEEEECSCC
T ss_pred -------hhHHHHHHHhCCCceEEEeecc
Confidence 2578899999999999987654
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.38 E-value=0.091 Score=44.26 Aligned_cols=76 Identities=13% Similarity=0.220 Sum_probs=47.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-------CCCeEEEEeCCHHHHHHHhhhCCCC-CceEEEcCCCCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-------DAKNVTILDQSPHQLAKAKQKEPLK-ECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-------~~~~v~~vD~s~~~~~~a~~~~~~~-~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
+..+|+|+|+|+|.++..+.... ...+++.+|.|+...+.-++..... ++. ...++..++. ..-+|++
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~-w~~~~~~~~~---~~g~iia 154 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIH-WHDSFEDVPE---GPAVILA 154 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEE-EESSGGGSCC---SSEEEEE
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccce-eccChhhccc---CCeEEEe
Confidence 44689999999999988775543 2467999999999877777665432 333 2334443331 1245555
Q ss_pred cCcccccC
Q 022929 182 AGSIEYWP 189 (290)
Q Consensus 182 ~~~l~~~~ 189 (290)
+..+..+|
T Consensus 155 NE~fDAlP 162 (365)
T d1zkda1 155 NEYFDVLP 162 (365)
T ss_dssp ESSGGGSC
T ss_pred cccCcccc
Confidence 55544443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.28 E-value=0.077 Score=39.05 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=57.3
Q ss_pred EEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
+|.=||+|. | .++..+.+. +.+|++.|.+++.++.+++... +.....+.+.+ ...|+|+..-- ...
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~---~~~~~~~~~~~----~~~DiIilavp---~~~ 69 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL---VDEAGQDLSLL----QTAKIIFLCTP---IQL 69 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS---CSEEESCGGGG----TTCSEEEECSC---HHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhc---cceeeeecccc----cccccccccCc---Hhh
Confidence 577789985 3 455666665 7899999999999998876532 12222232222 24899886432 123
Q ss_pred HHHHHHHHHhccCCCCEEEEE
Q 022929 191 PQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 191 ~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+++++++...++++..++-.
T Consensus 70 ~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 70 ILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp HHHHHHHHGGGSCTTCEEEEC
T ss_pred hhhhhhhhhhhcccccceeec
Confidence 457889999988888876543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.15 E-value=1.1 Score=35.95 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=50.4
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEe
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVS 181 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~ 181 (290)
.+|||+-||-|.+...+... +...+.++|+++.+.+..+.|.. -..+.+|+.++... -...|+++.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~~---~~~~~~Di~~~~~~~~~~~dll~~ 67 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHS---AKLIKGDISKISSDEFPKCDGIIG 67 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHCC---SEEEESCTTTSCGGGSCCCSEEEE
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCC---CCCccCChhhCCHhHcccccEEee
Confidence 36999999999999888776 23345689999999999888874 35678899876421 124899987
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.03 E-value=0.18 Score=37.64 Aligned_cols=93 Identities=18% Similarity=0.042 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCcc--chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~--G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~ 180 (290)
+++++||=.|++. |..+..+++.. +.+|++++-+++..+.+++... . ..+..+-.+. ......+|+|+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga-~--~vi~~~~~~~~~~~~~~~~~~Gvd~v~ 103 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGF-D--AAFNYKTVNSLEEALKKASPDGYDCYF 103 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhh-h--hhcccccccHHHHHHHHhhcCCCceeE
Confidence 4899999888754 67888888886 6899999999998888887642 1 2222221111 01234599988
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-.-. .+.++...++|+++|.+++..
T Consensus 104 D~vG-------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 104 DNVG-------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp ESSC-------HHHHHHHGGGEEEEEEEEECC
T ss_pred EecC-------chhhhhhhhhccCCCeEEeec
Confidence 4321 257889999999999998864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.00 E-value=0.51 Score=32.96 Aligned_cols=87 Identities=14% Similarity=0.219 Sum_probs=54.0
Q ss_pred CEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCcc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSI 185 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~l 185 (290)
++|+=+|+|. ++..+++.+ .+..|+.+|.+++.++.+.+.. +..++.+|..+.. ..-+.+|.+++.
T Consensus 1 M~IvI~G~G~--~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~--- 72 (132)
T d1lssa_ 1 MYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---DALVINGDCTKIKTLEDAGIEDADMYIAV--- 72 (132)
T ss_dssp CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---SSEEEESCTTSHHHHHHTTTTTCSEEEEC---
T ss_pred CEEEEECCCH--HHHHHHHHHHHCCCCcceecCChhhhhhhhhhh---hhhhccCcccchhhhhhcChhhhhhhccc---
Confidence 3577788764 444443321 2689999999999998887653 4678899986632 222348888863
Q ss_pred cccCCHH--HHHHHHHhccCCCCEE
Q 022929 186 EYWPDPQ--RGIREAYRVLKLGGKA 208 (290)
Q Consensus 186 ~~~~~~~--~~l~~~~~~L~pgG~l 208 (290)
.++.+ .+.....+.+.+.-.+
T Consensus 73 --t~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 73 --TGKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp --CSCHHHHHHHHHHHHHTTCCCEE
T ss_pred --CCcHHHHHHHHHHHHHcCCceEE
Confidence 22222 2344455667776444
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.10 E-value=0.017 Score=43.29 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=60.8
Q ss_pred CCCCEEEEEcC-cc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecC
Q 022929 109 NRNMLVVDVGG-GT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~-G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~ 183 (290)
+++++||=.|+ |. |..+..+++.. +.++++++.+++..+.+++... .. .+ |..+.. .....+|+|+-..
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa-~~--~i--~~~~~~~~~~~~~g~D~v~d~~ 99 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGA-EE--AA--TYAEVPERAKAWGGLDLVLEVR 99 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTC-SE--EE--EGGGHHHHHHHTTSEEEEEECS
T ss_pred CCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccccc-ce--ee--ehhhhhhhhhcccccccccccc
Confidence 48899999884 43 78888888886 6799999999988888886532 11 11 111111 1124599988532
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
. + .+....++|+|+|+++...
T Consensus 100 G----~----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 100 G----K----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp C----T----THHHHHTTEEEEEEEEEC-
T ss_pred c----h----hHHHHHHHHhcCCcEEEEe
Confidence 1 1 3567889999999998753
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.10 E-value=0.31 Score=35.89 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-------CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-------~~~~~~D~i~ 180 (290)
+++++|+=+|+|. |..+..+++......|+++|.+++-++.+++.... +++..+-.+.. ...+.+|+++
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd---~~in~~~~~~~~~~~~~~~~~~G~d~vi 103 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT---DFVNPNDHSEPISQVLSKMTNGGVDFSL 103 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC---EEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc---EEEcCCCcchhHHHHHHhhccCCcceee
Confidence 4899999999998 55556666666678999999999999999876421 23322111111 1124589887
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 212 (290)
-.-. ....++.....++++ |.+++..
T Consensus 104 d~~G------~~~~~~~a~~~~~~g~~~~~~~g 130 (175)
T d1cdoa2 104 ECVG------NVGVMRNALESCLKGWGVSVLVG 130 (175)
T ss_dssp ECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred eecC------CHHHHHHHHHHhhCCCcceeEEE
Confidence 4432 234566777776666 5554443
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.69 E-value=0.68 Score=38.04 Aligned_cols=144 Identities=14% Similarity=0.161 Sum_probs=88.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC------------------------CCCCceEEEcC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------------------PLKECKIVEGD 165 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------------------------~~~~v~~~~~d 165 (290)
+...|+-+|||.=.....+....++..++=+|. ++.++.=++.. ...+..++..|
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 456899999999877777777766777777887 55444322110 12345677888
Q ss_pred CCCCC---------CCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCC---CchhHhhhhHHH----
Q 022929 166 AEDLP---------FPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVY---PTFWLSRYFADV---- 227 (290)
Q Consensus 166 ~~~l~---------~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~---~~~~~~~~~~~~---- 227 (290)
+.++. +..+..-++++-.++.+++.. .++++.+.+..+. |.+++-++.. +...+.+.+...
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~-~~~i~YE~i~~~~p~D~FG~~M~~nl~~~ 253 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH-GLWISYDPIGGSQPNDRFGAIMQSNLKES 253 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEECCCCSTTCCHHHHHHHHHHHH
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC-ceEEEeccCCCCCCCChHHHHHHHHHHHh
Confidence 87642 223345588999999999754 4688888887754 5555555542 222222222111
Q ss_pred -------hhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 228 -------WMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 228 -------~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
...+.+.+...+-+ .||..+...++...
T Consensus 254 r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~dm~~~ 288 (328)
T d1rjda_ 254 RNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDMWEI 288 (328)
T ss_dssp HCCCCTTTTTTCSHHHHHGGG--TTSSEEEEEEHHHH
T ss_pred cCCCCCccccCCCHHHHHHHH--hcCCccchhhHHHH
Confidence 12356777776655 48887777766543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=91.46 E-value=0.27 Score=36.46 Aligned_cols=124 Identities=11% Similarity=-0.013 Sum_probs=71.4
Q ss_pred EEEEEcCcc--chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~--G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
.|-=||+|. ..++..|++. +.+|++.|.+++..+...++........-.....++...-...|.++..- ..-..
T Consensus 4 nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~--~~~~~ 79 (176)
T d2pgda2 4 DIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLV--KAGQA 79 (176)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECS--CTTHH
T ss_pred cEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEec--CchHH
Confidence 466688886 3466666666 78999999999988877655332211111111111100011256666431 11122
Q ss_pred HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 191 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
...+++.+...+++|-.++-.....+. +..++.+.+++.|...++.--.+
T Consensus 80 v~~v~~~l~~~~~~g~iiid~sT~~~~---------------~~~~~~~~~~~~g~~~ldapvsG 129 (176)
T d2pgda2 80 VDNFIEKLVPLLDIGDIIIDGGNSEYR---------------DTMRRCRDLKDKGILFVGSGVSG 129 (176)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHH---------------HHHHHHHHHHHTTCEEEEEEEES
T ss_pred HHHHHHHHHhccccCcEEEecCcchhH---------------HHHHHHHHHHhcCCceecccccc
Confidence 245778888899988766554433322 23466677888898888776554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.52 E-value=1.6 Score=30.06 Aligned_cols=89 Identities=11% Similarity=-0.029 Sum_probs=50.5
Q ss_pred EEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC----CCCCccEEEecCccc
Q 022929 113 LVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF----PTDYADRYVSAGSIE 186 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~----~~~~~D~i~~~~~l~ 186 (290)
+++=+|+|. ++..+++.+ .+..|+.+|.+++.++.+++. ....+.+|..+... .-...|.+++...
T Consensus 2 ~~iIiG~G~--~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~-- 73 (134)
T d2hmva1 2 QFAVIGLGR--FGGSIVKELHRMGHEVLAVDINEEKVNAYASY----ATHAVIANATEENELLSLGIRNFEYVIVAIG-- 73 (134)
T ss_dssp CEEEECCSH--HHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----CSEEEECCTTCTTHHHHHTGGGCSEEEECCC--
T ss_pred EEEEECCCH--HHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----CCcceeeecccchhhhccCCccccEEEEEcC--
Confidence 355667764 343333321 278999999999999988743 34677888866431 1134777665322
Q ss_pred ccCCH-HHHHHHHHhccCCCCEEEEE
Q 022929 187 YWPDP-QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 187 ~~~~~-~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+. ...+-...+.+.+...++..
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 74 --ANIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp --SCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred --chHHhHHHHHHHHHHcCCCcEEee
Confidence 122 22333444445566666554
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.52 E-value=0.7 Score=34.41 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=59.9
Q ss_pred CCEEEEEc--CccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CCCCCccEEEecC
Q 022929 111 NMLVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVSAG 183 (290)
Q Consensus 111 ~~~vLDiG--~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~~~~~D~i~~~~ 183 (290)
+++||=.| .|.|..+..+++..+...+++++.+++......+..... ..+...-.++. ..++.+|+|+-.-
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad--~vi~~~~~~~~~~~~~~~~~GvDvv~D~v 108 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD--AAVNYKTGNVAEQLREACPGGVDVYFDNV 108 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS--EEEETTSSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce--EEeeccchhHHHHHHHHhccCceEEEecC
Confidence 37899877 346999999999986567888887777666555433322 12222111110 1234599998433
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
. ...++...+.|+++|+++...
T Consensus 109 G-------g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 109 G-------GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp C-------HHHHHHHHTTEEEEEEEEEC-
T ss_pred C-------chhHHHHhhhccccccEEEec
Confidence 2 246889999999999998764
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.87 E-value=0.12 Score=38.29 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=63.8
Q ss_pred CCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC--CCC-CCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA--EDL-PFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~--~~l-~~~~~~~D~i~~~~~ 184 (290)
++.+||=-|+ |-|.++..+++.. +.+|+++.-+++-.+.+++.... .+ +...|. ... ....+.+|+|+-.-.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGad-~v-i~~~~~~~~~~~~~~~~gvd~vid~vg 99 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGAS-EV-ISREDVYDGTLKALSKQQWQGAVDPVG 99 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCS-EE-EEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhccc-ce-EeccchhchhhhcccCCCceEEEecCc
Confidence 4566887664 3578889999987 68999999988888888766432 11 111111 111 233456998874322
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
...+.+..+.|+|+|++++.....
T Consensus 100 -------g~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 100 -------GKQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp -------THHHHHHHTTEEEEEEEEECCCSS
T ss_pred -------HHHHHHHHHHhccCceEEEeeccC
Confidence 247789999999999998875443
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=89.69 E-value=0.27 Score=41.69 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=37.5
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC--CCeEEEEeCCHHHHHHHhhh
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQK 153 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~ 153 (290)
.++..++|||+..|..+..+++..+ ..+|+++|+++...+..+++
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkN 257 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNV 257 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHH
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHH
Confidence 4778999999999999887776543 36899999999998888765
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=1.7 Score=33.97 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=50.8
Q ss_pred CCCEEEEEcCccch---hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCCCCC----------CC
Q 022929 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLP----------FP 172 (290)
Q Consensus 110 ~~~~vLDiG~G~G~---~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~~l~----------~~ 172 (290)
+++.+|=.|+++|. ++..|++. +.+|+.+|.+++.++.+.+.. ...++.++..|+.+.. -.
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 67899999988874 44555555 789999999998777664432 2235778899997632 01
Q ss_pred CCCccEEEecCcc
Q 022929 173 TDYADRYVSAGSI 185 (290)
Q Consensus 173 ~~~~D~i~~~~~l 185 (290)
-++.|+++.+-..
T Consensus 87 ~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 87 HSGVDICINNAGL 99 (257)
T ss_dssp HCCCSEEEECCCC
T ss_pred cCCCCEEEecccc
Confidence 1468998875433
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=89.05 E-value=1.1 Score=33.41 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=79.5
Q ss_pred CEEEEEcCcc-ch-hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------CCC---------ce-E-EEcCCCCCC
Q 022929 112 MLVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LKE---------CK-I-VEGDAEDLP 170 (290)
Q Consensus 112 ~~vLDiG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~~---------v~-~-~~~d~~~l~ 170 (290)
.+|-=||+|. |. ++..++.. +.+|+.+|.+++.++.+.++.. ... .. + ...+...
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 80 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD-- 80 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT--
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc--
Confidence 5688899986 33 34444454 7899999999998887765411 110 01 1 2223222
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh----hcCC--------------
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW----MLFP-------------- 232 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~----~~~~-------------- 232 (290)
+ ...|+|+= .+.+.+.-.+++++++.++++|+-.+.-.+...+...+........ .+|+
T Consensus 81 ~--~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~ 157 (186)
T d1wdka3 81 F--GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRG 157 (186)
T ss_dssp G--GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEEC
T ss_pred c--cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCC
Confidence 2 23688774 4555555556899999999999988876554443222221111100 0111
Q ss_pred ------CHHHHHHHHHHCCCcEEEEEE
Q 022929 233 ------KEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 233 ------~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+.+...++++..|...+.+.+
T Consensus 158 ~~T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 158 EKSSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 245677888889988777654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.66 E-value=0.83 Score=31.61 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=58.2
Q ss_pred CccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCcccccCCHH--
Q 022929 119 GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSIEYWPDPQ-- 192 (290)
Q Consensus 119 ~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~l~~~~~~~-- 192 (290)
||.|..+..+++.+.+..++.+|.+++..+.++. .++.++.+|..+.. ..-++++.+++.. ++..
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~d~~n 76 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----ESDSET 76 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SSHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----cCccccccccCCHHHHHHhhhhcCcEEEEec-----cchhhh
Confidence 4557788888888877889999999998887764 36788999986532 2223478777632 2222
Q ss_pred HHHHHHHhccCCCCEEEEEcc
Q 022929 193 RGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 193 ~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..+-...+.+.|...++....
T Consensus 77 ~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 77 IHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp HHHHHHHHHHCSSSCEEEECS
T ss_pred HHHHHHHHHHCCCceEEEEEc
Confidence 234445566788877766543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.30 E-value=1.9 Score=33.38 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=53.2
Q ss_pred CCCEEEEEcCccc---hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEE
Q 022929 110 RNMLVVDVGGGTG---FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G---~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~ 180 (290)
+++++|=.|+++| .++..+++. +.+|+.+|.+++.++...+... ++..+..|+.+.. -.-++.|+++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~g~iDilV 81 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVRECP--GIEPVCVDLGDWEATERALGSVGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHST--TCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHHHHhCCceEEE
Confidence 6899999998877 355666666 7899999999998887766543 5778888986531 1124699988
Q ss_pred ecCccc
Q 022929 181 SAGSIE 186 (290)
Q Consensus 181 ~~~~l~ 186 (290)
.+-...
T Consensus 82 nnAg~~ 87 (244)
T d1pr9a_ 82 NNAAVA 87 (244)
T ss_dssp ECCCCC
T ss_pred eccccc
Confidence 754443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=86.39 E-value=3.3 Score=31.88 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=68.5
Q ss_pred CCCEEEEEcCccch---hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----------CCCCCc
Q 022929 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----------FPTDYA 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~---~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----------~~~~~~ 176 (290)
+++++|=.|++.|. ++..+++. +.+|+.++.+.+.++...+... .++.++..|+.+.. -.-++.
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVAALE-AEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHcC-CceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 67889999988763 55555665 7999999999998877766554 46778889986532 001469
Q ss_pred cEEEecCcccccCCH-----H--------------HHHHHHHhccCCCCEEEEEccC
Q 022929 177 DRYVSAGSIEYWPDP-----Q--------------RGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 177 D~i~~~~~l~~~~~~-----~--------------~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
|+++.+....+.... + .+.+.+...++.++.+++....
T Consensus 81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~ 137 (241)
T d2a4ka1 81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV 137 (241)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc
Confidence 988886444333221 1 3455666778888877776544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=85.78 E-value=4.7 Score=28.93 Aligned_cols=91 Identities=10% Similarity=0.027 Sum_probs=56.5
Q ss_pred CEEEEEcCcc-ch-hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceE------EEcCCCCCCCCCCCccEE
Q 022929 112 MLVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKI------VEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 112 ~~vLDiG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~------~~~d~~~l~~~~~~~D~i 179 (290)
++|.=||+|. |. ++..|++. +.+|+.+|.+++.++..++.... ..... ...|..+ .. ..+|+|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~--~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL-AV--KDADVI 76 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH-HH--TTCSEE
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh-Hh--cCCCEE
Confidence 5788899997 33 44455554 78999999999888887754210 11111 1111111 01 348998
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEE
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
+..-- ....+.+++++...++++-.+++
T Consensus 77 ii~v~---~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 77 LIVVP---AIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EECSC---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEEc---hhHHHHHHHHhhhccCCCCEEEE
Confidence 86421 22346799999999999886654
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=85.20 E-value=1.2 Score=32.15 Aligned_cols=126 Identities=16% Similarity=0.062 Sum_probs=63.1
Q ss_pred CCCEEEEEcCcc-ch-hHHHHHhhCCCCeEEEEeCCHHH-HHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQ-LAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~-~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.+.+||=||.|. |. .+..|... +..+++.+.-+.+- .+.+++.. ... .++.++.-.-..+|+|++...-.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~~~----~~~--~~~~~~~~~l~~~Divi~atss~ 95 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDLG----GEA--VRFDELVDHLARSDVVVSATAAP 95 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHHT----CEE--CCGGGHHHHHHTCSEEEECCSSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHhhh----ccc--ccchhHHHHhccCCEEEEecCCC
Confidence 678999999874 43 33344444 33579888888544 34444321 121 22222221112599999865433
Q ss_pred -ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 187 -YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 187 -~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
.+=+ ...++.....-+.+..+++.|...|...............++.+++..+.++
T Consensus 96 ~~ii~-~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~~~~v~l~~ld~l~~~~~~ 152 (159)
T d1gpja2 96 HPVIH-VDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIARE 152 (159)
T ss_dssp SCCBC-HHHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGSTTEEEEEHHHHHHHHHH
T ss_pred Ccccc-HhhhHHHHHhcccCCCeEEEeecCCCCcChhhhccCCeEEEeHHHHHHHHHH
Confidence 2222 2344444444445555667776554321111111111123467777766554
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.78 E-value=1.8 Score=33.76 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=55.0
Q ss_pred CCCEEEEEcCccch---hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCCCCC----------CC
Q 022929 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLP----------FP 172 (290)
Q Consensus 110 ~~~~vLDiG~G~G~---~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~~l~----------~~ 172 (290)
.|+++|=-|++.|. ++..+++. +.+|+.+|.+++.++.+.+.. ...++.++..|+.+.. -.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 47888888987763 44555555 899999999998777665432 2235778889997632 01
Q ss_pred CCCccEEEecCcccccCCHH
Q 022929 173 TDYADRYVSAGSIEYWPDPQ 192 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~ 192 (290)
-++.|+++.+-......+.+
T Consensus 80 ~G~iDilVnnAg~~~~~~~~ 99 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKNWE 99 (254)
T ss_dssp HSCCCEEEECCCCCCSSSHH
T ss_pred cCCcCeecccccccccccch
Confidence 14699999876666555543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=83.50 E-value=0.42 Score=35.78 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=54.4
Q ss_pred CCCCEEEEEcC--c-cchhHHHHHhhCCCCeEEEEe----CCHHHHHHHhhhCCCCCceEEEc---CCCCCC--------
Q 022929 109 NRNMLVVDVGG--G-TGFTTLGIVKHVDAKNVTILD----QSPHQLAKAKQKEPLKECKIVEG---DAEDLP-------- 170 (290)
Q Consensus 109 ~~~~~vLDiG~--G-~G~~~~~l~~~~~~~~v~~vD----~s~~~~~~a~~~~~~~~v~~~~~---d~~~l~-------- 170 (290)
+++.+||=+.+ | .|..+..+++.. +.+++++- -+++..+.+++.... ..+.. |..+..
T Consensus 27 ~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad---~vi~~~~~~~~~~~~~v~~~~~ 102 (189)
T d1gu7a2 27 TPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEWIK 102 (189)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHHHH
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhcccc---EEEeccccchhHHHHHHHHHHh
Confidence 47777877733 3 467778888886 67887763 334455555554321 12222 111110
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...+.+|+++-. .. ...+....+.|+|+|+++...
T Consensus 103 ~~g~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 103 QSGGEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHTCCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEECC
T ss_pred hccCCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEEC
Confidence 012458888843 21 235677889999999998764
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=83.06 E-value=0.16 Score=39.82 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=48.4
Q ss_pred eEEEcCCCCC--CCCCCCccEEEecCcc----c---ccCC-------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhh
Q 022929 160 KIVEGDAEDL--PFPTDYADRYVSAGSI----E---YWPD-------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (290)
Q Consensus 160 ~~~~~d~~~l--~~~~~~~D~i~~~~~l----~---~~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~ 223 (290)
+++++|..++ .++++++|+|+..--. . ...+ ....++++.++|+|+|.+++.....
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~-------- 77 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF-------- 77 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH--------
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCch--------
Confidence 4677777442 2567788888874211 0 1111 1257889999999999987643110
Q ss_pred hHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
....+...+.+.||.......+
T Consensus 78 ---------~~~~~~~~~~~~g~~~~~~iiW 99 (256)
T d1g60a_ 78 ---------NCAFICQYLVSKGMIFQNWITW 99 (256)
T ss_dssp ---------HHHHHHHHHHHTTCEEEEEEEE
T ss_pred ---------hhhhhhhhhhcccceeeeeeEe
Confidence 1234667788899987765443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=82.75 E-value=2.8 Score=32.34 Aligned_cols=74 Identities=12% Similarity=0.038 Sum_probs=50.6
Q ss_pred CCCEEEEEcCccch---hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----------CCCCCc
Q 022929 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----------FPTDYA 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~---~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----------~~~~~~ 176 (290)
+++++|=-|++.|. ++..+++. +.+|+.+|.+++.++...+... .+...+..|+.+.. -.-++.
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISDYLG-ANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHG-GGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhC-CCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 57888888887763 45555665 7899999999988877665442 35677888886531 112469
Q ss_pred cEEEecCccc
Q 022929 177 DRYVSAGSIE 186 (290)
Q Consensus 177 D~i~~~~~l~ 186 (290)
|+++.+-...
T Consensus 80 DilVnnAg~~ 89 (243)
T d1q7ba_ 80 DILVNNAGIT 89 (243)
T ss_dssp SEEEECCCCC
T ss_pred ceehhhhhhc
Confidence 9988754433
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.41 E-value=4.6 Score=29.31 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=53.4
Q ss_pred EEEEEcCcc-chhHHHHHhhCCCCeEEEE-eCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGT-GFTTLGIVKHVDAKNVTIL-DQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~-G~~~~~l~~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
+|.=||||. |..-.......++.+++++ |.+++-.+...+........-...|.+++ +.+...|+|+...--
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~iD~v~I~tp~----- 76 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESL-LEDPEIDALYVPLPT----- 76 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHH-HHCTTCCEEEECCCG-----
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHh-hhccccceeeecccc-----
Confidence 577899995 5544444555677888875 99887665554443322212233444332 123348988864221
Q ss_pred HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 191 PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 191 ~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
..-++-+..+|+.|=.+++.-|...
T Consensus 77 -~~h~~~~~~~l~~g~~v~~EKP~~~ 101 (184)
T d1ydwa1 77 -SLHVEWAIKAAEKGKHILLEKPVAM 101 (184)
T ss_dssp -GGHHHHHHHHHTTTCEEEECSSCSS
T ss_pred -hhhcchhhhhhhccceeeccccccc
Confidence 1223445566666656665544433
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.12 E-value=3.4 Score=31.79 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=51.2
Q ss_pred CCCEEEEEcCccch---hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC------CCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~---~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~------~~~~~~D~i~ 180 (290)
+++++|=.|++.|. ++..+++. +.+|+.+|.+++.++...+... ++..+..|+.+.. -.-++.|+++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~g~iDilV 79 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAKECP--GIEPVCVDLGDWDATEKALGGIGPVDLLV 79 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHST--TCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHHHHcCCCeEEE
Confidence 67899988987763 45555665 7999999999988777665543 6778888886532 1125699988
Q ss_pred ecCcc
Q 022929 181 SAGSI 185 (290)
Q Consensus 181 ~~~~l 185 (290)
.+-..
T Consensus 80 nnAg~ 84 (242)
T d1cyda_ 80 NNAAL 84 (242)
T ss_dssp ECCCC
T ss_pred ECCcc
Confidence 75443
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=81.36 E-value=2.4 Score=33.25 Aligned_cols=73 Identities=16% Similarity=0.103 Sum_probs=51.4
Q ss_pred CCCEEEEEcCccch---hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCC----------CCCCC
Q 022929 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLP----------FPTDY 175 (290)
Q Consensus 110 ~~~~vLDiG~G~G~---~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~----------~~~~~ 175 (290)
+++++|-.|+++|. ++..+++. +.+|+.+|.+++.++.+.+... ..++.++..|+.+.. -.-++
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 67899999988774 44555555 7899999999988877765533 345778888986632 01146
Q ss_pred ccEEEecCc
Q 022929 176 ADRYVSAGS 184 (290)
Q Consensus 176 ~D~i~~~~~ 184 (290)
.|+++.+..
T Consensus 83 iD~lVnnAG 91 (268)
T d2bgka1 83 LDIMFGNVG 91 (268)
T ss_dssp CCEEEECCC
T ss_pred cceeccccc
Confidence 899987544
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.03 E-value=2.9 Score=32.80 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCEEEEEcCccchhHHH----HHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCC----------CCCC
Q 022929 111 NMLVVDVGGGTGFTTLG----IVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP----------FPTD 174 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~----l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~----------~~~~ 174 (290)
|++|.=|-.|++.++.. |++. .+.+|+.++.+++.++.+.+... ..++.++..|+.+.. -..+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~-~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRL-FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHH-SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 56775553344444443 4443 36799999999987776654422 246788999997642 0114
Q ss_pred CccEEEecCcccccC---C--H--------------HHHHHHHHhccCCCCEEEEEc
Q 022929 175 YADRYVSAGSIEYWP---D--P--------------QRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~---~--~--------------~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+.|+++.+-.+.... + . -.+.+.+...|+++|.++...
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 699999875543221 1 0 135666778888899887754
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=80.75 E-value=0.55 Score=34.84 Aligned_cols=93 Identities=13% Similarity=0.186 Sum_probs=61.2
Q ss_pred CCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCC--CCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE--DLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~--~l~~~~~~~D~i~~~~~l 185 (290)
++.+||=.|+ |-|..++.+++.. +.+|+++.-+++..+.+++... . .++..+-. .-.+....+|.++ ..+.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGa-d--~vi~~~~~~~~~~l~~~~~~~vv-D~Vg 105 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGA-S--RVLPRDEFAESRPLEKQVWAGAI-DTVG 105 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTE-E--EEEEGGGSSSCCSSCCCCEEEEE-ESSC
T ss_pred CCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhcc-c--cccccccHHHHHHHHhhcCCeeE-EEcc
Confidence 4457775553 2577888888887 7899999999988888876532 1 12222211 1123445578775 2222
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
...+....+.|+++|+++....
T Consensus 106 ------g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 106 ------DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp ------HHHHHHHHHTEEEEEEEEECCC
T ss_pred ------hHHHHHHHHHhccccceEeecc
Confidence 3578899999999999998754
|